Query 022044
Match_columns 303
No_of_seqs 180 out of 430
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.7 6.7E-17 1.4E-21 119.7 4.3 47 24-70 1-56 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.3 1.6E-12 3.4E-17 90.8 4.2 43 26-68 1-48 (48)
3 KOG0724 Zuotin and related mol 99.0 1.1E-11 2.5E-16 114.8 -3.2 97 8-108 34-134 (335)
4 smart00717 SANT SANT SWI3, AD 98.8 4.2E-09 9E-14 69.5 3.7 44 26-69 1-48 (49)
5 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 4.7E-09 1E-13 68.5 3.9 41 28-68 1-45 (45)
6 PF13921 Myb_DNA-bind_6: Myb-l 98.5 1.3E-07 2.7E-12 67.9 3.4 40 29-68 1-43 (60)
7 PLN03212 Transcription repress 98.1 4E-06 8.7E-11 78.5 5.5 63 6-68 2-72 (249)
8 PLN03091 hypothetical protein; 97.8 1.2E-05 2.5E-10 80.6 3.7 48 22-69 10-62 (459)
9 PLN03212 Transcription repress 97.7 0.00011 2.3E-09 69.1 7.0 51 24-74 76-129 (249)
10 PLN03091 hypothetical protein; 97.6 0.00022 4.9E-09 71.7 7.7 51 25-75 66-119 (459)
11 KOG0457 Histone acetyltransfer 97.5 0.0001 2.2E-09 73.7 4.3 56 15-70 55-120 (438)
12 PLN03162 golden-2 like transcr 97.3 0.00041 9E-09 69.2 5.9 53 22-74 233-293 (526)
13 KOG0048 Transcription factor, 97.2 0.00044 9.6E-09 62.7 4.4 44 26-69 9-57 (238)
14 COG5259 RSC8 RSC chromatin rem 97.2 0.00031 6.7E-09 71.3 3.6 49 17-65 268-321 (531)
15 KOG1279 Chromatin remodeling f 96.9 0.00068 1.5E-08 69.0 3.8 44 22-65 249-295 (506)
16 KOG0048 Transcription factor, 96.0 0.011 2.5E-07 53.7 5.0 49 25-73 61-112 (238)
17 KOG0724 Zuotin and related mol 95.8 0.0066 1.4E-07 56.8 3.1 52 23-74 161-222 (335)
18 COG5114 Histone acetyltransfer 95.6 0.019 4.1E-07 56.8 5.2 43 27-69 64-110 (432)
19 KOG4468 Polycomb-group transcr 95.1 0.025 5.4E-07 59.5 4.4 50 26-75 88-150 (782)
20 KOG0049 Transcription factor, 94.0 0.065 1.4E-06 57.2 4.5 45 24-68 358-406 (939)
21 KOG0049 Transcription factor, 93.5 0.08 1.7E-06 56.5 4.1 52 24-75 410-465 (939)
22 KOG4329 DNA-binding protein [G 93.4 0.063 1.4E-06 53.9 3.1 48 22-72 273-324 (445)
23 PF13837 Myb_DNA-bind_4: Myb/S 93.2 0.13 2.7E-06 38.9 3.8 46 26-71 1-67 (90)
24 smart00426 TEA TEA domain. 92.3 0.16 3.5E-06 40.0 3.4 39 27-65 4-66 (68)
25 KOG0051 RNA polymerase I termi 91.6 0.12 2.6E-06 54.3 2.5 50 20-69 377-429 (607)
26 PF13873 Myb_DNA-bind_5: Myb/S 89.3 0.84 1.8E-05 34.2 4.8 48 27-74 3-75 (78)
27 PF01285 TEA: TEA/ATTS domain 88.8 0.39 8.4E-06 48.4 3.4 45 23-67 46-112 (431)
28 COG5118 BDP1 Transcription ini 87.7 0.56 1.2E-05 47.7 3.7 40 23-62 362-404 (507)
29 KOG0051 RNA polymerase I termi 87.6 0.51 1.1E-05 49.7 3.5 50 24-73 434-512 (607)
30 KOG3841 TEF-1 and related tran 86.8 1.1 2.4E-05 45.4 5.2 50 25-74 75-148 (455)
31 KOG0050 mRNA splicing protein 86.8 0.4 8.7E-06 50.0 2.2 50 22-71 3-56 (617)
32 PLN03142 Probable chromatin-re 85.8 0.83 1.8E-05 50.6 4.0 46 27-72 825-874 (1033)
33 KOG3554 Histone deacetylase co 83.1 1 2.2E-05 47.0 3.1 64 24-90 283-358 (693)
34 KOG4167 Predicted DNA-binding 81.5 1.5 3.3E-05 47.6 3.7 46 25-73 618-666 (907)
35 PF12776 Myb_DNA-bind_3: Myb/S 76.4 4.1 8.8E-05 31.1 3.8 38 28-65 1-59 (96)
36 KOG1194 Predicted DNA-binding 76.0 3.7 7.9E-05 42.6 4.4 40 24-63 185-227 (534)
37 PF09111 SLIDE: SLIDE; InterP 72.0 5.1 0.00011 33.9 3.7 53 20-72 43-114 (118)
38 COG5147 REB1 Myb superfamily p 65.5 2.6 5.6E-05 43.8 0.7 56 18-73 12-71 (512)
39 KOG0050 mRNA splicing protein 64.5 12 0.00026 39.6 5.2 49 25-73 58-108 (617)
40 KOG2009 Transcription initiati 62.1 9 0.00019 40.6 3.9 48 24-74 407-457 (584)
41 KOG4282 Transcription factor G 57.9 18 0.00039 34.4 4.8 52 26-77 54-122 (345)
42 PF08914 Myb_DNA-bind_2: Rap1 43.4 24 0.00053 27.1 2.7 46 26-71 2-60 (65)
43 PLN03142 Probable chromatin-re 42.1 76 0.0017 35.8 7.2 52 24-75 924-991 (1033)
44 COG5147 REB1 Myb superfamily p 38.3 43 0.00093 35.1 4.3 50 24-73 70-122 (512)
45 PRK13923 putative spore coat p 38.1 25 0.00053 32.0 2.3 53 25-77 4-70 (170)
46 KOG1019 Retinoblastoma pathway 36.5 27 0.00058 38.6 2.6 49 14-62 32-84 (837)
47 KOG0385 Chromatin remodeling c 32.4 53 0.0011 36.7 4.0 54 22-75 791-847 (971)
48 PF10854 DUF2649: Protein of u 31.4 23 0.00049 28.0 0.8 17 283-299 43-59 (67)
49 TIGR02894 DNA_bind_RsfA transc 29.8 51 0.0011 30.0 2.9 48 26-73 4-60 (161)
50 PF06967 Mo-nitro_C: Mo-depend 26.9 48 0.001 27.4 2.0 21 229-249 33-54 (84)
51 PF06461 DUF1086: Domain of Un 26.5 1.3E+02 0.0027 27.1 4.7 47 28-74 40-92 (145)
52 PF04504 DUF573: Protein of un 24.4 55 0.0012 26.7 2.0 18 27-44 5-22 (98)
53 PF09420 Nop16: Ribosome bioge 20.6 1.4E+02 0.0031 26.0 3.9 43 25-67 113-162 (164)
54 PF13325 MCRS_N: N-terminal re 20.1 1.1E+02 0.0023 28.5 3.2 42 24-65 71-123 (199)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.66 E-value=6.7e-17 Score=119.73 Aligned_cols=47 Identities=43% Similarity=0.649 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC-c---eecc----CCC-CHHHHHhHHHHHhHH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG-W---RQIE----GTK-TAVQIRSHAQKFFSK 70 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~-W---kkIa----gTR-T~~QVRSHAQKYF~K 70 (303)
|.+..||+|||++||+||+.||++ | ++|+ .+| |+.||+|||||||.|
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 467889999999999999999994 9 9997 578 999999999999986
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.32 E-value=1.6e-12 Score=90.79 Aligned_cols=43 Identities=44% Similarity=0.833 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC-ceecc---C-CCCHHHHHhHHHHHh
Q 022044 26 REKWTEEEHQRFLDALKMYGRG-WRQIE---G-TKTAVQIRSHAQKFF 68 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~-WkkIa---g-TRT~~QVRSHAQKYF 68 (303)
++.||+||+++|++|+++||.+ |+.|| + +||..||++|+++|.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999 99999 7 999999999999983
No 3
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-11 Score=114.75 Aligned_cols=97 Identities=28% Similarity=0.318 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCCeecccCCCC-CCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHHhhCCCCCCCc
Q 022044 8 FENDSLPKVRKPYTITKQREK-WTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVRESNGSSESSI 83 (303)
Q Consensus 8 ~g~d~~~K~rKPytitK~r~~-WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~~~G~~~~~~ 83 (303)
.+++..++++|+|++.+.+.+ ||++||.+|.++|..|++.|.+|- +.++.+|+|+|+|+||-++.+.. .+..
T Consensus 34 ~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~----~~~~ 109 (335)
T KOG0724|consen 34 WTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSD----TSLA 109 (335)
T ss_pred hHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccc----cccc
Confidence 345566899999999998655 999999999999999987899999 99999999999999999997753 3445
Q ss_pred ccccCCCCCCCCCCCCccCcccccc
Q 022044 84 MPIEIPPPRPKRKPVHPYPRKSVDS 108 (303)
Q Consensus 84 ~~i~iPppRpKRkp~hpyprk~~~~ 108 (303)
+.+.+|++++++++.|+||++....
T Consensus 110 ~~~~~~~~~~~~k~~~~y~~~~~~~ 134 (335)
T KOG0724|consen 110 EVEEFYNFWPKFKSWRQYPQKDEPD 134 (335)
T ss_pred cccccCCccccccccccCCCCCCcc
Confidence 6788999999999999999998764
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.81 E-value=4.2e-09 Score=69.47 Aligned_cols=44 Identities=32% Similarity=0.665 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-cCceecc---CCCCHHHHHhHHHHHhH
Q 022044 26 REKWTEEEHQRFLDALKMYG-RGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yG-r~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
++.||++|...|+.++..|| .+|..|+ ++||+.||+.++..++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999 7899999 99999999999887653
No 5
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.81 E-value=4.7e-09 Score=68.51 Aligned_cols=41 Identities=37% Similarity=0.712 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHhC-cCceecc---CCCCHHHHHhHHHHHh
Q 022044 28 KWTEEEHQRFLDALKMYG-RGWRQIE---GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 28 ~WTeEEH~rFLegLe~yG-r~WkkIa---gTRT~~QVRSHAQKYF 68 (303)
.||+||++.|+.+++.|| ..|..|+ ++||..||+.|+++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 499999999999999999 7799999 8899999999998764
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.47 E-value=1.3e-07 Score=67.90 Aligned_cols=40 Identities=35% Similarity=0.772 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHh
Q 022044 29 WTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 29 WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF 68 (303)
||+||.++++++++.||.+|+.|| +.||+.||+.++.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHC
Confidence 999999999999999999999999 8899999999998855
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.11 E-value=4e-06 Score=78.54 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=51.3
Q ss_pred CCCCC-CCCCCCCCCee--cccCCCCCCHHHHHHHHHHHHHhCcC-ceecc----CCCCHHHHHhHHHHHh
Q 022044 6 YSFEN-DSLPKVRKPYT--ITKQREKWTEEEHQRFLDALKMYGRG-WRQIE----GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 6 ~s~g~-d~~~K~rKPyt--itK~r~~WTeEEH~rFLegLe~yGr~-WkkIa----gTRT~~QVRSHAQKYF 68 (303)
++||. +.+.+.+.|+- ..-.++.||+||.+++++++++||.. |+.|| ..||..|||-++.+|+
T Consensus 2 ~~~~~~~~~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 2 MSCGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCCCCCCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 46654 44466666664 33568899999999999999999975 99999 4899999999999997
No 8
>PLN03091 hypothetical protein; Provisional
Probab=97.84 E-value=1.2e-05 Score=80.64 Aligned_cols=48 Identities=19% Similarity=0.490 Sum_probs=42.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC-ceecc----CCCCHHHHHhHHHHHhH
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG-WRQIE----GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~-WkkIa----gTRT~~QVRSHAQKYF~ 69 (303)
....++.||.||.+++++++++||.. |+.|+ ..||..|||-++.+|+.
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLd 62 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccC
Confidence 44566789999999999999999986 99999 38999999999987763
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.67 E-value=0.00011 Score=69.11 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=45.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
-+++.||+||.++.++....||..|..|| +.||..||+.|+..++.|..+.
T Consensus 76 I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r 129 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR 129 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence 45689999999999999999999999999 8999999999998777765443
No 10
>PLN03091 hypothetical protein; Provisional
Probab=97.55 E-value=0.00022 Score=71.68 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
.++.||+||.+++++..+.||..|.+|| +.||..||+.++...+.|..+..
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~ 119 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999 89999999999988777766653
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.48 E-value=0.0001 Score=73.74 Aligned_cols=56 Identities=36% Similarity=0.681 Sum_probs=48.8
Q ss_pred CCCCCeecccC------CCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhHH
Q 022044 15 KVRKPYTITKQ------REKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFSK 70 (303)
Q Consensus 15 K~rKPytitK~------r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~K 70 (303)
+.--||++-.. ...||.+|.-+||+|++.||=| |..|| ||||..+|+.|.-|+|..
T Consensus 55 ~~~H~Yrim~~~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 55 QNDHPYRIMDTNSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCceeecCCCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 45556765433 4689999999999999999998 99999 999999999999999984
No 12
>PLN03162 golden-2 like transcription factor; Provisional
Probab=97.29 E-value=0.00041 Score=69.24 Aligned_cols=53 Identities=32% Similarity=0.367 Sum_probs=42.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC---ceecc-----CCCCHHHHHhHHHHHhHHHHHh
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG---WRQIE-----GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~---WkkIa-----gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
..|.|-+||.|=|++|++|++..|-+ =|+|- ..=|..+|+||-|||...+.+.
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence 44677889999999999999999932 23333 6778999999999999987643
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.17 E-value=0.00044 Score=62.74 Aligned_cols=44 Identities=18% Similarity=0.424 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC-ceecc---C-CCCHHHHHhHHHHHhH
Q 022044 26 REKWTEEEHQRFLDALKMYGRG-WRQIE---G-TKTAVQIRSHAQKFFS 69 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~-WkkIa---g-TRT~~QVRSHAQKYF~ 69 (303)
+|.||.||.+++.+-++.||.+ |..|+ | -|+--|||-++-.|..
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence 7999999999999999999998 99999 7 8999999999988864
No 14
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.17 E-value=0.00031 Score=71.29 Aligned_cols=49 Identities=35% Similarity=0.634 Sum_probs=40.9
Q ss_pred CCCeeccc--CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHH
Q 022044 17 RKPYTITK--QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQ 65 (303)
Q Consensus 17 rKPytitK--~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQ 65 (303)
-+|.++.- ....||.+|-.++|||++.||-+|.+|| ||||+.||--|.-
T Consensus 268 f~~v~~~~~~~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL 321 (531)
T COG5259 268 FKPVTISLLIRDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFL 321 (531)
T ss_pred chhhhhhcccccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHH
Confidence 34444433 3448999999999999999999999999 9999999998863
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.95 E-value=0.00068 Score=69.04 Aligned_cols=44 Identities=34% Similarity=0.607 Sum_probs=40.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHH
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQ 65 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQ 65 (303)
-...+..||++|--++|+|++.||-+|.+|+ +|||..||-.|.-
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL 295 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFL 295 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHH
Confidence 4567789999999999999999999999999 9999999999864
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.96 E-value=0.011 Score=53.70 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
.++.||+||.+..+++=..||-.|..|| +.||.-.|+.|+--..+|..+
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 999999999998555544433
No 17
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0066 Score=56.81 Aligned_cols=52 Identities=35% Similarity=0.437 Sum_probs=46.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcC-ceecc----CCCCHHHHHhHHH-----HHhHHHHHh
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRG-WRQIE----GTKTAVQIRSHAQ-----KFFSKVVRE 74 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~-WkkIa----gTRT~~QVRSHAQ-----KYF~Kl~k~ 74 (303)
.+.+..|+..+|.+|+.++..||+. |..|. ..|++.|+.+||| +||.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~ 222 (335)
T KOG0724|consen 161 RRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSG 222 (335)
T ss_pred hhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhh
Confidence 4566799999999999999999998 99998 7899999999999 888888544
No 18
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.58 E-value=0.019 Score=56.83 Aligned_cols=43 Identities=30% Similarity=0.723 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhH
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
+-|+.+|.-+|++|++..|-| |..|| |.|+...|++|.-||+.
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 689999999999999999998 99999 99999999999999998
No 19
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=95.06 E-value=0.025 Score=59.52 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCcCceec---------c----CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 26 REKWTEEEHQRFLDALKMYGRGWRQI---------E----GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~WkkI---------a----gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
+..||-.|.+-|..||++||+++.+| + -.||.-|||.|+-+-..++.+.-
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 67999999999999999999998877 1 57899999998877777766654
No 20
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=93.99 E-value=0.065 Score=57.17 Aligned_cols=45 Identities=20% Similarity=0.503 Sum_probs=39.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF 68 (303)
-..|+||++|...++.|+++||.. |-+|- +.|+..|||.+.-..+
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL 406 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVL 406 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHH
Confidence 466899999999999999999876 99998 9999999998754443
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=93.45 E-value=0.08 Score=56.49 Aligned_cols=52 Identities=31% Similarity=0.614 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
-+.++||-.|.++++++++.||.+ |.+|| |.||-.|.++.-..+..-..+..
T Consensus 410 ~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~ 465 (939)
T KOG0049|consen 410 AKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLA 465 (939)
T ss_pred hccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999 99999 89999898887666555444443
No 22
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=93.42 E-value=0.063 Score=53.90 Aligned_cols=48 Identities=21% Similarity=0.501 Sum_probs=39.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcCceecc----CCCCHHHHHhHHHHHhHHHH
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRGWRQIE----GTKTAVQIRSHAQKFFSKVV 72 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~WkkIa----gTRT~~QVRSHAQKYF~Kl~ 72 (303)
++..--.|+++|.+.|-+||+.||+++-.|. .||++-.|--+ ||.+.+
T Consensus 273 ~rd~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVey---YYlWKk 324 (445)
T KOG4329|consen 273 VRDDLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEY---YYLWKK 324 (445)
T ss_pred cccccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHH---HHHhhc
Confidence 3445568999999999999999999999998 89998887643 666553
No 23
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=93.17 E-value=0.13 Score=38.90 Aligned_cols=46 Identities=26% Similarity=0.503 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--c------Cceecc-------CCCCHHHHHhHHHHHhHHH
Q 022044 26 REKWTEEEHQRFLDALKM------YG--R------GWRQIE-------GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~------yG--r------~WkkIa-------gTRT~~QVRSHAQKYF~Kl 71 (303)
|..||++|-..||+.+.. |+ . -|+.|+ -.||+.||+.....-..+-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 457999999999998776 32 1 299999 4799999999986544444
No 24
>smart00426 TEA TEA domain.
Probab=92.31 E-value=0.16 Score=39.98 Aligned_cols=39 Identities=33% Similarity=0.535 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-cee--c-------------c--------CCCCHHHHHhHHH
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQ--I-------------E--------GTKTAVQIRSHAQ 65 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-Wkk--I-------------a--------gTRT~~QVRSHAQ 65 (303)
+.|.++=...|++||+.|-.. +++ + + ..||.-||-||-|
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 579999999999999998543 332 1 1 5799999999987
No 25
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=91.58 E-value=0.12 Score=54.26 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=44.3
Q ss_pred eeccc-CCCCCCHHHHHHHHHHHHHhCcCceecc--CCCCHHHHHhHHHHHhH
Q 022044 20 YTITK-QREKWTEEEHQRFLDALKMYGRGWRQIE--GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 20 ytitK-~r~~WTeEEH~rFLegLe~yGr~WkkIa--gTRT~~QVRSHAQKYF~ 69 (303)
|++-. ++|.||+||.+.+..-..++|..|+.|+ -.|.|.-||.++..|-.
T Consensus 377 y~~FE~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 377 YTPFENKRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVK 429 (607)
T ss_pred CCccccccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhc
Confidence 34444 9999999999999999999999999999 78999999999987754
No 26
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=89.34 E-value=0.84 Score=34.18 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHh-----Cc------------Cceecc--------CCCCHHHHHhHHHHHhHHHHHh
Q 022044 27 EKWTEEEHQRFLDALKMY-----GR------------GWRQIE--------GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~y-----Gr------------~WkkIa--------gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
..||.+|-+.+++-|+.| |+ .|..|+ +.||..|++-.++.+-....+.
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~ 75 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK 75 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999987 41 299999 5899999999888777666543
No 27
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=88.80 E-value=0.39 Score=48.39 Aligned_cols=45 Identities=29% Similarity=0.449 Sum_probs=28.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcC-ceecc---------------------CCCCHHHHHhHHHHH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRG-WRQIE---------------------GTKTAVQIRSHAQKF 67 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~-WkkIa---------------------gTRT~~QVRSHAQKY 67 (303)
....+.|+++=...|++||+.|-.. +++|. .+||..||-||.|-.
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 4566899999999999999998442 33333 589999999999966
No 28
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=87.74 E-value=0.56 Score=47.66 Aligned_cols=40 Identities=25% Similarity=0.570 Sum_probs=36.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHh
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRS 62 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRS 62 (303)
.+...+||.+|-++|..||..+|-++..|+ ++|...||..
T Consensus 362 ~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKa 404 (507)
T COG5118 362 KKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKA 404 (507)
T ss_pred CCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHH
Confidence 345579999999999999999999999999 9999999985
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=87.63 E-value=0.51 Score=49.68 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=40.3
Q ss_pred cCCCCCCHHHHHHHHHHHH-------Hh-------C----------c--Cceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 24 KQREKWTEEEHQRFLDALK-------MY-------G----------R--GWRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe-------~y-------G----------r--~WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
.++++||-||.+.+|..++ .| | . .|..|+ +||+..|||.|++|-..+-..
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~ 512 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF 512 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence 4789999999999999986 34 1 1 299999 999999999998887665433
No 30
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=86.82 E-value=1.1 Score=45.43 Aligned_cols=50 Identities=34% Similarity=0.525 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CcC-------------ceecc--------CCCCHHHHHhHHHHHhHHHHHh
Q 022044 25 QREKWTEEEHQRFLDALKMY---GRG-------------WRQIE--------GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~y---Gr~-------------WkkIa--------gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
.-|.|+++=.+.|+|||..| ||. =..|| .|||..||-||-|=.-.+..|.
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~re 148 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLRE 148 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999987 321 12233 6999999999999665555544
No 31
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.80 E-value=0.4 Score=50.05 Aligned_cols=50 Identities=24% Similarity=0.491 Sum_probs=44.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhHHH
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~Kl 71 (303)
+-...+.|+.-|.+-+-.|+.+||+. |.+|+ ..+|+.||+..+.+|..-.
T Consensus 3 i~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~ 56 (617)
T KOG0050|consen 3 IEIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPA 56 (617)
T ss_pred eEEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHH
Confidence 44567899999999999999999998 99999 8999999999999887543
No 32
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=85.78 E-value=0.83 Score=50.60 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhHHHH
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFSKVV 72 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~Kl~ 72 (303)
..||.-+-..|+.|.++|||+ ...|| .+||+..|+-+|+-|+.+..
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~ 874 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYK 874 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 479999999999999999998 99999 78999999999999887743
No 33
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=83.12 E-value=1 Score=46.99 Aligned_cols=64 Identities=23% Similarity=0.437 Sum_probs=42.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc----CCCCHHHHHhHHHHHhHHH--------HHhhCCCCCCCcccccCCC
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE----GTKTAVQIRSHAQKFFSKV--------VRESNGSSESSIMPIEIPP 90 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa----gTRT~~QVRSHAQKYF~Kl--------~k~~~G~~~~~~~~i~iPp 90 (303)
-.-+.|+..|-.+|.+||++||+++..|- +=|+. +|-.+=||+.. +|.+....++-++.|-||+
T Consensus 283 DemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl---~sIveyYYmwKttdRYvqqKrlKaaeadsKlkqvYIP~ 358 (693)
T KOG3554|consen 283 DEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSL---TSIVEYYYMWKTTDRYVQQKRLKAAEADSKLKQVYIPT 358 (693)
T ss_pred hhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHH---HHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhheeeccC
Confidence 34578999999999999999999888777 44443 33344455443 2222233345567788874
No 34
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=81.50 E-value=1.5 Score=47.61 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
....||..|..+|-.||-.|-+++-.|+ .+||+.||- |=||.+.+-
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCV---eyYYtWKK~ 666 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCV---EYYYTWKKI 666 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHH---HHHHHHHHh
Confidence 4468999999999999999999999999 999999996 446655443
No 35
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=76.40 E-value=4.1 Score=31.11 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHh--------Cc-----Cceecc--------CCCCHHHHHhHHH
Q 022044 28 KWTEEEHQRFLDALKMY--------GR-----GWRQIE--------GTKTAVQIRSHAQ 65 (303)
Q Consensus 28 ~WTeEEH~rFLegLe~y--------Gr-----~WkkIa--------gTRT~~QVRSHAQ 65 (303)
+||+++.+-||+.|... +. +|..|+ ...|..||++|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~ 59 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK 59 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 59999999999998653 12 266676 4678999999965
No 36
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=75.98 E-value=3.7 Score=42.65 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=33.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSH 63 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSH 63 (303)
.....||.||--+|-.|+..||+++.+|. +-|+..-++-+
T Consensus 185 ~~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqy 227 (534)
T KOG1194|consen 185 EFPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQY 227 (534)
T ss_pred CCcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHH
Confidence 34568999999999999999999999998 78887666543
No 37
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=72.01 E-value=5.1 Score=33.93 Aligned_cols=53 Identities=23% Similarity=0.521 Sum_probs=38.8
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHhCc---C-ceecc---------------CCCCHHHHHhHHHHHhHHHH
Q 022044 20 YTITKQREKWTEEEHQRFLDALKMYGR---G-WRQIE---------------GTKTAVQIRSHAQKFFSKVV 72 (303)
Q Consensus 20 ytitK~r~~WTeEEH~rFLegLe~yGr---~-WkkIa---------------gTRT~~QVRSHAQKYF~Kl~ 72 (303)
|.....+..||+||.+-.|-.|-+||- + |.+|- .+||+..|.=++.--..-+.
T Consensus 43 y~~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~ 114 (118)
T PF09111_consen 43 YPPNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE 114 (118)
T ss_dssp STSTSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence 333566778999999999999999998 5 98887 59999999888864443333
No 38
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=65.50 E-value=2.6 Score=43.75 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=46.2
Q ss_pred CCeecccCCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 18 KPYTITKQREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 18 KPytitK~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
|++.+....|.|+..|.+..+-+.+.||-. |.+|| ..||.-||+.|+-.|...+.+
T Consensus 12 ~~~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk 71 (512)
T COG5147 12 KLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLK 71 (512)
T ss_pred ccccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcc
Confidence 344455677899999999999999999987 99999 779999999999666655543
No 39
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=64.51 E-value=12 Score=39.65 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc--CCCCHHHHHhHHHHHhHHHHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE--GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa--gTRT~~QVRSHAQKYF~Kl~k 73 (303)
++.-|+.||.++.|.+.+++..-|..|+ -.||..||--+.++.......
T Consensus 58 ~~tews~eederlLhlakl~p~qwrtIa~i~gr~~~qc~eRy~~ll~~~~s 108 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPTQWRTIADIMGRTSQQCLERYNNLLDVYVS 108 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCccchHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 3467999999999999999999999999 789999999888765544433
No 40
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=62.15 E-value=9 Score=40.58 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
...++||.+|-++|-.||..+|-....|+ +.|+..||+ +||-++-.|.
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK---~K~~~eE~r~ 457 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIK---AKFKKEEKRN 457 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHH---HHHhhhhhcc
Confidence 34579999999999999999999999999 999999998 5777766554
No 41
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=57.89 E-value=18 Score=34.43 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHh----C------cCceecc-------CCCCHHHHHhHHHHHhHHHHHhhCC
Q 022044 26 REKWTEEEHQRFLDALKMY----G------RGWRQIE-------GTKTAVQIRSHAQKFFSKVVRESNG 77 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~y----G------r~WkkIa-------gTRT~~QVRSHAQKYF~Kl~k~~~G 77 (303)
...|+.+|-..+|++.... . ..|..|+ .-||+.||+.-..+...+..+...+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~ 122 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAK 122 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999986542 1 1299999 5799999999987766666665533
No 42
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=43.44 E-value=24 Score=27.05 Aligned_cols=46 Identities=30% Similarity=0.480 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---cC---ceecc---C-CCCHHHHHhHHHHHhHHH
Q 022044 26 REKWTEEEHQRFLDALKMY---G---RG---WRQIE---G-TKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~y---G---r~---WkkIa---g-TRT~~QVRSHAQKYF~Kl 71 (303)
|...|.||....+..|..+ | .| |+.++ . ..|-.-.|.|.-|.+...
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 4578999999999999765 3 12 99999 5 677778888887776644
No 43
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=42.06 E-value=76 Score=35.82 Aligned_cols=52 Identities=15% Similarity=0.392 Sum_probs=42.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC-ceecc---------------CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIE---------------GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~-WkkIa---------------gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
.++..||+||.+-.|-.|-+||-+ |.+|- .+||+..+.-++.-...-+.|..
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~~e~ 991 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIEKEN 991 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 345569999999999999999977 99984 69999999999986666666664
No 44
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=38.33 E-value=43 Score=35.10 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=42.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
.++..|+.||.+..+..=.++|-.|..|+ +.||..||--....-+.....
T Consensus 70 lk~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 70 LKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred cccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 45678999999999999999999999999 779999998777766665544
No 45
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=38.09 E-value=25 Score=32.03 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcC-ceecc--------CCCCHHHHHhHHH-----HHhHHHHHhhCC
Q 022044 25 QREKWTEEEHQRFLDALKMYGRG-WRQIE--------GTKTAVQIRSHAQ-----KFFSKVVRESNG 77 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~-WkkIa--------gTRT~~QVRSHAQ-----KYF~Kl~k~~~G 77 (303)
....||.||..++-+.+..|++. =.+++ -.||+.+|.-++. +|-..+...+++
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~ 70 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKE 70 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 44679999999999998888874 33333 5899999999993 344444444444
No 46
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=36.49 E-value=27 Score=38.61 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=37.0
Q ss_pred CCCCCCeecccCCCCCCHHHHHHHHHHHHHhCcCceecc----CCCCHHHHHh
Q 022044 14 PKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIE----GTKTAVQIRS 62 (303)
Q Consensus 14 ~K~rKPytitK~r~~WTeEEH~rFLegLe~yGr~WkkIa----gTRT~~QVRS 62 (303)
.+-|++..-.+-.--|+..|-++|+++-.+||++|++.+ .+|...+|..
T Consensus 32 t~qR~~~~~d~l~pq~s~~~~e~~~k~~~k~~~~~r~~~~~~~~~R~s~~vel 84 (837)
T KOG1019|consen 32 TPQRKRKLADKLSPQWSKLELERFYKAYRKRGREWRKSPAAVRSTRSSNMVEL 84 (837)
T ss_pred CCCCCcccccccCcchhHhhhhhhhhcccccccccccccccccchhhhhHHHH
Confidence 344444444455568999999999999999999999999 5666666643
No 47
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=32.43 E-value=53 Score=36.71 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=45.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC-ceecc--CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG-WRQIE--GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~-WkkIa--gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
.+..-..||+-+-..|+.|-++|||+ -..|+ --.|+.-|..+|.-||.++.+..
T Consensus 791 l~~gft~w~k~df~~fi~a~eKygr~di~~ia~~~e~~~eev~~y~rvfwer~~el~ 847 (971)
T KOG0385|consen 791 LSQGFTNWTKRDFNQFIKANEKYGRDDIENIAAEVEGTPEEVGEYARVFWERLEELS 847 (971)
T ss_pred hhccccchhhhhHHHHHHHhhccCcchhhhhHHhhcCCHHHHHHHHHHHHHHHHHhh
Confidence 44555679999999999999999998 88888 23399999999999999988763
No 48
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=31.37 E-value=23 Score=28.01 Aligned_cols=17 Identities=47% Similarity=1.165 Sum_probs=14.3
Q ss_pred eeehhHHHHHHhhhhhc
Q 022044 283 SIWIHIYYLGWFLAIVI 299 (303)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ 299 (303)
.|||-|++|-||+...+
T Consensus 43 GiWiVilFLtWf~lwm~ 59 (67)
T PF10854_consen 43 GIWIVILFLTWFLLWMV 59 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58999999999987643
No 49
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.83 E-value=51 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC-------ceecc--CCCCHHHHHhHHHHHhHHHHH
Q 022044 26 REKWTEEEHQRFLDALKMYGRG-------WRQIE--GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~-------WkkIa--gTRT~~QVRSHAQKYF~Kl~k 73 (303)
...||.||..++-+.+.+|=|. +..++ -.||+.-|.-+|..|..|.-.
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHHHHH
Confidence 4579999999999999998441 55555 689999999999887765433
No 50
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=26.95 E-value=48 Score=27.40 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=15.2
Q ss_pred CCcceEEEeceEE-EecCCCCC
Q 022044 229 PSCTSIKLFGRTV-LVSDSWKP 249 (303)
Q Consensus 229 ~~~~slKLFGktV-~V~d~~k~ 249 (303)
+-.+.|+|||++| -++-.||-
T Consensus 33 PFERdi~lfGr~l~hIPPLCKL 54 (84)
T PF06967_consen 33 PFERDIKLFGRKLFHIPPLCKL 54 (84)
T ss_pred CCcceEEECCeeEEecCCCCcc
Confidence 4457799999997 45555663
No 51
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=26.54 E-value=1.3e+02 Score=27.06 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhCcC---ceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 28 KWTEEEHQRFLDALKMYGRG---WRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 28 ~WTeEEH~rFLegLe~yGr~---WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
-.+..+...||.++-+||-+ |+-+- ..||...|+.|+-=|+..|...
T Consensus 40 GFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~HL~E~ 92 (145)
T PF06461_consen 40 GFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMRHLCEP 92 (145)
T ss_pred ccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999985 77777 7899999999998777777544
No 52
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.45 E-value=55 Score=26.66 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 022044 27 EKWTEEEHQRFLDALKMY 44 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~y 44 (303)
..||+|+.-.+|+||-.|
T Consensus 5 R~WS~eDEi~iL~gl~~~ 22 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDF 22 (98)
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 459999999999999998
No 53
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=20.61 E-value=1.4e+02 Score=25.98 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc-C------CCCHHHHHhHHHHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE-G------TKTAVQIRSHAQKF 67 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa-g------TRT~~QVRSHAQKY 67 (303)
...+=|+.|..-...-|++||-+++.|+ - -.|+-|||--..+|
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 3445667777666666899999999999 3 35888988766665
No 54
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=20.06 E-value=1.1e+02 Score=28.53 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=31.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC---ceecc--------CCCCHHHHHhHHH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG---WRQIE--------GTKTAVQIRSHAQ 65 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~---WkkIa--------gTRT~~QVRSHAQ 65 (303)
..+..||.+|.+.+..+.....-. |.+|= .+||+.+...|+|
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~ 123 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWR 123 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHH
Confidence 456789999999888865444221 44443 6899999999998
Done!