Query 022044
Match_columns 303
No_of_seqs 180 out of 430
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 13:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.5 1.2E-14 4.1E-19 111.9 4.5 60 10-69 2-64 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.4 6.1E-14 2.1E-18 104.8 3.8 51 24-74 6-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.4 1.5E-13 5E-18 102.6 5.2 51 24-74 7-60 (72)
4 2iw5_B Protein corest, REST co 99.3 6.4E-13 2.2E-17 121.1 4.5 61 11-71 118-181 (235)
5 2xag_B REST corepressor 1; ami 99.2 4.9E-12 1.7E-16 124.7 4.5 60 12-71 366-428 (482)
6 2elk_A SPCC24B10.08C protein; 99.2 9.1E-12 3.1E-16 89.9 4.4 44 26-69 9-57 (58)
7 1irz_A ARR10-B; helix-turn-hel 99.2 1.7E-11 5.7E-16 92.6 5.1 53 22-74 3-63 (64)
8 1x41_A Transcriptional adaptor 99.2 2E-11 6.9E-16 88.3 4.6 46 24-69 6-55 (60)
9 1guu_A C-MYB, MYB proto-oncoge 99.0 1.8E-10 6.1E-15 80.4 4.6 45 25-69 2-50 (52)
10 2din_A Cell division cycle 5-l 99.0 3.9E-10 1.3E-14 82.4 5.5 54 25-78 8-63 (66)
11 1gvd_A MYB proto-oncogene prot 99.0 4E-10 1.4E-14 78.8 4.3 45 25-69 2-50 (52)
12 2d9a_A B-MYB, MYB-related prot 98.9 5.3E-10 1.8E-14 80.2 4.4 46 24-69 6-55 (60)
13 2eqr_A N-COR1, N-COR, nuclear 98.9 8.7E-10 3E-14 80.4 4.6 41 23-63 9-52 (61)
14 2ltp_A Nuclear receptor corepr 98.4 1.2E-10 4.2E-15 90.6 0.0 51 23-73 13-66 (89)
15 1w0t_A Telomeric repeat bindin 98.9 2.1E-09 7E-14 75.7 4.6 45 25-69 1-51 (53)
16 2cqr_A RSGI RUH-043, DNAJ homo 98.8 3.5E-09 1.2E-13 80.8 5.7 46 24-69 16-68 (73)
17 2dim_A Cell division cycle 5-l 98.8 2.3E-09 7.7E-14 79.2 4.2 46 24-69 7-56 (70)
18 1ity_A TRF1; helix-turn-helix, 98.8 3.3E-09 1.1E-13 78.3 5.1 47 23-69 7-59 (69)
19 3sjm_A Telomeric repeat-bindin 98.8 7.2E-09 2.5E-13 76.7 4.8 45 24-68 9-59 (64)
20 2cjj_A Radialis; plant develop 98.7 1.3E-08 4.3E-13 81.0 5.5 53 25-77 7-66 (93)
21 2yqk_A Arginine-glutamic acid 98.6 1.8E-08 6.1E-13 74.2 4.2 44 25-71 8-55 (63)
22 2k9n_A MYB24; R2R3 domain, DNA 98.6 2.3E-08 8E-13 78.8 4.9 50 25-74 52-104 (107)
23 3osg_A MYB21; transcription-DN 98.6 2.3E-08 7.9E-13 81.0 4.7 47 23-69 8-57 (126)
24 3zqc_A MYB3; transcription-DNA 98.6 2.1E-08 7.2E-13 81.6 4.4 50 24-73 52-104 (131)
25 3osg_A MYB21; transcription-DN 98.6 3.4E-08 1.2E-12 80.0 4.7 48 24-71 60-110 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.4E-08 1.2E-12 76.9 4.2 46 25-70 55-103 (105)
27 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.6E-08 1.2E-12 76.8 4.3 44 25-68 3-50 (105)
28 3zqc_A MYB3; transcription-DNA 98.6 7.3E-08 2.5E-12 78.4 5.6 44 26-69 2-49 (131)
29 2crg_A Metastasis associated p 98.5 6.3E-08 2.1E-12 72.8 4.2 41 23-63 5-49 (70)
30 2k9n_A MYB24; R2R3 domain, DNA 98.5 6.7E-08 2.3E-12 76.2 4.3 44 26-69 1-48 (107)
31 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.1E-07 3.8E-12 72.2 4.0 46 24-69 6-57 (72)
32 1h8a_C AMV V-MYB, MYB transfor 98.4 1.4E-07 4.9E-12 76.1 4.4 46 24-69 25-74 (128)
33 1h8a_C AMV V-MYB, MYB transfor 98.4 1.2E-07 4E-12 76.6 3.6 45 25-69 78-125 (128)
34 2aje_A Telomere repeat-binding 98.4 2.4E-07 8.2E-12 75.3 4.7 49 22-70 9-65 (105)
35 2ckx_A NGTRF1, telomere bindin 98.4 3.1E-07 1.1E-11 71.6 4.8 45 27-71 1-53 (83)
36 2roh_A RTBP1, telomere binding 98.3 4.7E-07 1.6E-11 75.4 5.6 50 22-71 27-84 (122)
37 2juh_A Telomere binding protei 98.3 4.9E-07 1.7E-11 75.2 5.3 52 20-71 11-70 (121)
38 1wgx_A KIAA1903 protein; MYB D 98.3 4.1E-07 1.4E-11 70.0 4.4 42 26-67 8-56 (73)
39 4a69_C Nuclear receptor corepr 98.3 3.8E-07 1.3E-11 72.1 3.7 40 24-63 41-83 (94)
40 2llk_A Cyclin-D-binding MYB-li 98.2 5.9E-07 2E-11 68.6 3.8 47 19-65 16-64 (73)
41 1h89_C C-MYB, MYB proto-oncoge 98.2 5.5E-07 1.9E-11 74.9 3.1 45 25-69 109-156 (159)
42 1x58_A Hypothetical protein 49 98.2 1.8E-06 6.2E-11 65.0 4.8 43 23-65 5-53 (62)
43 1h89_C C-MYB, MYB proto-oncoge 98.2 1.3E-06 4.4E-11 72.7 4.3 45 25-69 57-105 (159)
44 4eef_G F-HB80.4, designed hema 98.1 4.2E-07 1.4E-11 70.6 0.6 40 26-65 20-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 97.6 3.6E-05 1.2E-09 70.9 3.6 46 25-70 7-61 (246)
46 1ofc_X ISWI protein; nuclear p 96.3 0.0033 1.1E-07 59.1 5.0 45 27-71 111-159 (304)
47 4b4c_A Chromodomain-helicase-D 95.5 0.012 4.2E-07 50.2 4.5 52 25-76 6-65 (211)
48 2xag_B REST corepressor 1; ami 95.4 0.0027 9.3E-08 63.0 0.0 38 26-63 189-229 (482)
49 1fex_A TRF2-interacting telome 95.0 0.018 6E-07 42.0 3.5 43 26-68 2-57 (59)
50 3hm5_A DNA methyltransferase 1 94.9 0.04 1.4E-06 44.0 5.4 51 25-75 29-87 (93)
51 1ofc_X ISWI protein; nuclear p 94.8 0.029 9.9E-07 52.7 5.1 51 25-75 211-280 (304)
52 1ug2_A 2610100B20RIK gene prod 92.9 0.17 5.7E-06 41.0 5.5 48 27-74 34-87 (95)
53 2y9y_A Imitation switch protei 92.4 0.098 3.3E-06 50.6 4.2 45 27-71 124-173 (374)
54 2ebi_A DNA binding protein GT- 91.9 0.25 8.5E-06 37.2 5.2 43 24-66 2-61 (86)
55 4b4c_A Chromodomain-helicase-D 90.8 0.49 1.7E-05 40.2 6.4 46 26-72 134-197 (211)
56 2hzd_A Transcriptional enhance 90.3 0.4 1.4E-05 37.7 5.0 43 24-66 4-70 (82)
57 4iej_A DNA methyltransferase 1 89.0 0.74 2.5E-05 36.9 5.7 50 26-75 30-87 (93)
58 2lr8_A CAsp8-associated protei 84.2 0.22 7.4E-06 38.4 0.0 42 27-68 15-61 (70)
59 2xb0_X Chromo domain-containin 79.3 0.79 2.7E-05 42.3 2.1 26 27-52 169-195 (270)
60 2xb0_X Chromo domain-containin 71.2 5.5 0.00019 36.7 5.5 40 26-65 3-50 (270)
61 1ig6_A MRF-2, modulator recogn 59.8 3 0.0001 32.6 1.1 44 47-95 56-107 (107)
62 2y9y_A Imitation switch protei 50.3 16 0.00056 35.3 4.8 52 25-76 227-297 (374)
63 1ign_A Protein (RAP1); RAP1,ye 41.8 27 0.00093 32.2 4.6 24 48-71 174-200 (246)
64 2a1i_A DNA excision repair pro 20.3 54 0.0019 28.0 2.5 20 28-47 118-137 (146)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=111.93 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=54.6
Q ss_pred CCCCCCCCCCeecccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhH
Q 022044 10 NDSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 10 ~d~~~K~rKPytitK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
...++|.++++.....++.||+||+++||+||++||.+|.+|| ++||+.|||.|+++|++
T Consensus 2 ssg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 2 SSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCC
T ss_pred CCcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 3456788999988899999999999999999999997799999 99999999999999854
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.1e-14 Score=104.81 Aligned_cols=51 Identities=35% Similarity=0.670 Sum_probs=46.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC------cCceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 24 KQREKWTEEEHQRFLDALKMYG------RGWRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yG------r~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
..++.||+||+++|+++|+.|| ..|.+|| ++||..|||.|+|+||.++.+.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999 5699999 9999999999999999988654
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=1.5e-13 Score=102.61 Aligned_cols=51 Identities=35% Similarity=0.693 Sum_probs=47.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
..++.||+||+++|++++++||..|..|| ++||..||+.|+++||.++.+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999 9999999999999999988654
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.32 E-value=6.4e-13 Score=121.10 Aligned_cols=61 Identities=28% Similarity=0.541 Sum_probs=57.3
Q ss_pred CCCCCCCCCeecccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHH
Q 022044 11 DSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 11 d~~~K~rKPytitK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl 71 (303)
..+.+.|+|+++.+...+||+||+++|++||.+||++|..|| +|||..||++|+++|+.|+
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999 9999999999999999874
No 5
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.22 E-value=4.9e-12 Score=124.71 Aligned_cols=60 Identities=28% Similarity=0.550 Sum_probs=55.2
Q ss_pred CCCCCCCCeecccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHH
Q 022044 12 SLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 12 ~~~K~rKPytitK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl 71 (303)
.+...|.|..+++...+||+|||++|++||.+|||+|+.|+ +|||+.|||+|+++|+.++
T Consensus 366 g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 366 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred ccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 34566788888999999999999999999999999999999 9999999999999998865
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.20 E-value=9.1e-12 Score=89.93 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-cCceecc---C-CCCHHHHHhHHHHHhH
Q 022044 26 REKWTEEEHQRFLDALKMYG-RGWRQIE---G-TKTAVQIRSHAQKFFS 69 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yG-r~WkkIa---g-TRT~~QVRSHAQKYF~ 69 (303)
++.||+||+++|++++++|| .+|..|| + +||+.|||.|+++||.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 56799999999999999999 5699999 8 9999999999999996
No 7
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.18 E-value=1.7e-11 Score=92.58 Aligned_cols=53 Identities=32% Similarity=0.410 Sum_probs=46.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC---ceecc-----CCCCHHHHHhHHHHHhHHHHHh
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG---WRQIE-----GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~---WkkIa-----gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
..+.+..||+|.|++|++|++.+|.+ |++|. ...|..||+||.|||+.++.|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 35678899999999999999999965 78886 6789999999999999999763
No 8
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.16 E-value=2e-11 Score=88.32 Aligned_cols=46 Identities=30% Similarity=0.567 Sum_probs=42.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-cCceecc---CCCCHHHHHhHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYG-RGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yG-r~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
-.++.||+||+++|++++++|| .+|.+|| ++||+.|||.|+++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3467899999999999999999 4699999 99999999999999986
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.03 E-value=1.8e-10 Score=80.42 Aligned_cols=45 Identities=27% Similarity=0.557 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-Cceecc---CCCCHHHHHhHHHHHhH
Q 022044 25 QREKWTEEEHQRFLDALKMYGR-GWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr-~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
.++.||+||+++++++++.||. .|..|| ++||..|||.|+++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 699999 89999999999999874
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3.9e-10 Score=82.44 Aligned_cols=54 Identities=26% Similarity=0.528 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc--CCCCHHHHHhHHHHHhHHHHHhhCCC
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE--GTKTAVQIRSHAQKFFSKVVRESNGS 78 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa--gTRT~~QVRSHAQKYF~Kl~k~~~G~ 78 (303)
.++.||.||+++++++++.||..|..|| ..||..|||.|++.|+.+..+...|.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 4578999999999999999999999999 56999999999999999988775553
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.97 E-value=4e-10 Score=78.83 Aligned_cols=45 Identities=27% Similarity=0.550 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
.++.||+||+++++++++.||.+ |..|| ++||..|||.|+++|+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999985 99999 89999999999998863
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=5.3e-10 Score=80.21 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=42.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-Cceecc---CCCCHHHHHhHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGR-GWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr-~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
..++.||+||.+++++++++||. .|..|| +.||..|||.|+++|+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 45678999999999999999995 799999 89999999999998874
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.7e-10 Score=80.39 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=37.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSH 63 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSH 63 (303)
.+....||+|||++|++||..||++|.+|| ++||..||+-|
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~ 52 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY 52 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH
Confidence 355678999999999999999999999999 99999999865
No 14
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-10 Score=90.61 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=46.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
.-.++.||+||+++|+++++.||..|..|| ++||..||+.|++.|+.++..
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 456789999999999999999999999999 999999999999999887644
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.86 E-value=2.1e-09 Score=75.75 Aligned_cols=45 Identities=22% Similarity=0.537 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-Cceecc---C--CCCHHHHHhHHHHHhH
Q 022044 25 QREKWTEEEHQRFLDALKMYGR-GWRQIE---G--TKTAVQIRSHAQKFFS 69 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr-~WkkIa---g--TRT~~QVRSHAQKYF~ 69 (303)
.++.||+||+++++++++.||. .|..|+ + +||..||+.++.+|..
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999995 699999 7 8999999999988754
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=3.5e-09 Score=80.80 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc----Cceecc---CCCCHHHHHhHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGR----GWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr----~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
...+.||.||..+|++||..||. .|.+|| +.||..||+.|++.+..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999994 499999 89999999999886643
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=79.18 Aligned_cols=46 Identities=22% Similarity=0.443 Sum_probs=42.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-cCceecc---CCCCHHHHHhHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYG-RGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yG-r~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
..++.||+||.+++++++++|| ..|..|| ++||..|||.|+++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999 5699999 89999999999998875
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.83 E-value=3.3e-09 Score=78.25 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=42.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-Cceecc---C--CCCHHHHHhHHHHHhH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGR-GWRQIE---G--TKTAVQIRSHAQKFFS 69 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr-~WkkIa---g--TRT~~QVRSHAQKYF~ 69 (303)
.+.++.||+||.++++++++.||. .|..|+ + .||..|||.++..|+.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999995 699999 7 9999999999998875
No 19
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.75 E-value=7.2e-09 Score=76.66 Aligned_cols=45 Identities=29% Similarity=0.571 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-Cceecc---C--CCCHHHHHhHHHHHh
Q 022044 24 KQREKWTEEEHQRFLDALKMYGR-GWRQIE---G--TKTAVQIRSHAQKFF 68 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr-~WkkIa---g--TRT~~QVRSHAQKYF 68 (303)
.+++.||+||.+++++++++||. .|..|+ + .||..|||.++..+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999997 599999 4 899999999997653
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.72 E-value=1.3e-08 Score=80.97 Aligned_cols=53 Identities=19% Similarity=0.505 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc----Cceecc---CCCCHHHHHhHHHHHhHHHHHhhCC
Q 022044 25 QREKWTEEEHQRFLDALKMYGR----GWRQIE---GTKTAVQIRSHAQKFFSKVVRESNG 77 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr----~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~~~G 77 (303)
..+.||.||..+|++||..||. .|.+|| +.||..||+.|+++++.++.....|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 3568999999999999999984 399999 8899999999999999887655445
No 21
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.8e-08 Score=74.23 Aligned_cols=44 Identities=25% Similarity=0.517 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc----CCCCHHHHHhHHHHHhHHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE----GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa----gTRT~~QVRSHAQKYF~Kl 71 (303)
....||+||+++|++||.+||++|.+|+ ++||+.||. +-||...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v---~fYY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELI---TFYYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHH---HHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHH---HHHhccc
Confidence 3468999999999999999999999999 899999996 4566544
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.64 E-value=2.3e-08 Score=78.77 Aligned_cols=50 Identities=18% Similarity=0.388 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
.++.||+||++++++++..||..|..|| ++||..||+.|+..+..++.+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 4689999999999999999999999999 9999999999999888776543
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.63 E-value=2.3e-08 Score=81.00 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=43.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
...++.||+||.++++++++.||.+|..|| ++||..|||.++++|+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 456788999999999999999999999999 89999999999998873
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.63 E-value=2.1e-08 Score=81.58 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHHHH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKVVR 73 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl~k 73 (303)
-.++.||+||++++++++..||..|..|| ++||..||+.|+..++.+...
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 35679999999999999999999999999 899999999999988876543
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.59 E-value=3.4e-08 Score=79.99 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=43.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHHH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~Kl 71 (303)
..++.||+||.++++++++.||..|..|| ++||..||+.|+..+..|+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999 8999999999987777665
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.58 E-value=3.4e-08 Score=76.93 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFSK 70 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~K 70 (303)
.++.||+||+++++++++.||..|..|| ++||..||+.|+..+..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999 899999999999876544
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.58 E-value=3.6e-08 Score=76.82 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHh
Q 022044 25 QREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF 68 (303)
.++.||+||.++++++++.||.+ |..|| ++||..||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 46789999999999999999985 99999 8999999999999886
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.55 E-value=7.3e-08 Score=78.37 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-Cceecc---CCCCHHHHHhHHHHHhH
Q 022044 26 REKWTEEEHQRFLDALKMYGR-GWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr-~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
+|.||+||.++++++++.||. +|..|| ++||..|||.|+++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccC
Confidence 578999999999999999995 599999 89999999999998873
No 29
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.52 E-value=6.3e-08 Score=72.84 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=37.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcCceecc----CCCCHHHHHhH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIE----GTKTAVQIRSH 63 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~WkkIa----gTRT~~QVRSH 63 (303)
.+....||+||+++|++||.+||++|..|+ ++||+.||..+
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f 49 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY 49 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH
Confidence 356678999999999999999999999999 79999999855
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.51 E-value=6.7e-08 Score=76.15 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-Cceecc---CCCCHHHHHhHHHHHhH
Q 022044 26 REKWTEEEHQRFLDALKMYGR-GWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr-~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
++.||+||.++++++++.||. +|..|| ++||+.|||.++.+|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 468999999999999999997 599999 89999999999988764
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=1.1e-07 Score=72.21 Aligned_cols=46 Identities=17% Similarity=0.474 Sum_probs=39.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC----ceecc--CCCCHHHHHhHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG----WRQIE--GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~----WkkIa--gTRT~~QVRSHAQKYF~ 69 (303)
...+.||.||+.+|.+||..|+.+ |.+|| ..||+.||+.|++++-.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345689999999999999999853 99999 55999999999876643
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.43 E-value=1.4e-07 Score=76.07 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
-.++.||+||.++++++++.||.+ |..|| ++||..||+.|+++|+.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 356899999999999999999975 99999 89999999999998763
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.42 E-value=1.2e-07 Score=76.58 Aligned_cols=45 Identities=27% Similarity=0.513 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
.++.||+||+++++++++.||..|..|| ++||..||+.|+..+..
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999999 89999999999876654
No 34
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.39 E-value=2.4e-07 Score=75.25 Aligned_cols=49 Identities=18% Similarity=0.468 Sum_probs=43.4
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC-ceecc-------CCCCHHHHHhHHHHHhHH
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG-WRQIE-------GTKTAVQIRSHAQKFFSK 70 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~-WkkIa-------gTRT~~QVRSHAQKYF~K 70 (303)
..+.++.||+||.+.+++|+++||.+ |+.|+ ..||.+||+.++..++.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 45677899999999999999999995 99999 379999999999887753
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.37 E-value=3.1e-07 Score=71.57 Aligned_cols=45 Identities=18% Similarity=0.499 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-ceecc-------CCCCHHHHHhHHHHHhHHH
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQIE-------GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-WkkIa-------gTRT~~QVRSHAQKYF~Kl 71 (303)
..||+||.+.+++|+++||.+ |+.|+ +.||.+||+.++..++.+-
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 369999999999999999995 99998 4899999999999887654
No 36
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.35 E-value=4.7e-07 Score=75.39 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=44.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcC-ceecc-------CCCCHHHHHhHHHHHhHHH
Q 022044 22 ITKQREKWTEEEHQRFLDALKMYGRG-WRQIE-------GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 22 itK~r~~WTeEEH~rFLegLe~yGr~-WkkIa-------gTRT~~QVRSHAQKYF~Kl 71 (303)
..+.++.||.||.+.+++|+++||.+ |+.|+ ..||.+||+.++..++.+-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 45778999999999999999999996 99998 4899999999998887654
No 37
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.33 E-value=4.9e-07 Score=75.18 Aligned_cols=52 Identities=17% Similarity=0.463 Sum_probs=46.0
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHhCcC-ceecc-------CCCCHHHHHhHHHHHhHHH
Q 022044 20 YTITKQREKWTEEEHQRFLDALKMYGRG-WRQIE-------GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 20 ytitK~r~~WTeEEH~rFLegLe~yGr~-WkkIa-------gTRT~~QVRSHAQKYF~Kl 71 (303)
....+.++.||.||.+.+++|+++||.+ |..|+ ..||.+||+.++..+..+.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 4467888999999999999999999995 99999 3799999999999887753
No 38
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.32 E-value=4.1e-07 Score=70.00 Aligned_cols=42 Identities=17% Similarity=0.436 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC----ceecc---CCCCHHHHHhHHHHH
Q 022044 26 REKWTEEEHQRFLDALKMYGRG----WRQIE---GTKTAVQIRSHAQKF 67 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~----WkkIa---gTRT~~QVRSHAQKY 67 (303)
...||.||..+|++||..|+++ |.+|| ++||+.||+-|.+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4679999999999999999984 99999 899999999887654
No 39
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.29 E-value=3.8e-07 Score=72.07 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=36.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSH 63 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSH 63 (303)
+....||+|||++|.+||..||++|.+|+ ++||..||.-|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~ 83 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY 83 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHH
Confidence 44578999999999999999999999999 99999999865
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.25 E-value=5.9e-07 Score=68.58 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=40.4
Q ss_pred CeecccCCCCCCHHHHHHHHHHHHHhCcCceecc--CCCCHHHHHhHHH
Q 022044 19 PYTITKQREKWTEEEHQRFLDALKMYGRGWRQIE--GTKTAVQIRSHAQ 65 (303)
Q Consensus 19 PytitK~r~~WTeEEH~rFLegLe~yGr~WkkIa--gTRT~~QVRSHAQ 65 (303)
-+.-.-.++.||+||.+++++++++||..|..|| -.||..||+.++.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~ 64 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCR 64 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHH
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3334557789999999999999999999999999 6899999999985
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.21 E-value=5.5e-07 Score=74.90 Aligned_cols=45 Identities=29% Similarity=0.520 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhHHHHHhH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
.++.||+||+++++++++.||..|..|| ++||..||+.|+..+..
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999999999999 89999999999876553
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.17 E-value=1.8e-06 Score=64.96 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=38.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcCceecc------CCCCHHHHHhHHH
Q 022044 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIE------GTKTAVQIRSHAQ 65 (303)
Q Consensus 23 tK~r~~WTeEEH~rFLegLe~yGr~WkkIa------gTRT~~QVRSHAQ 65 (303)
+.++..||+||.+.+++|+++||+.|+.|+ ..||.+.++..+.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 457889999999999999999999999999 6899999997654
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.16 E-value=1.3e-06 Score=72.67 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFS 69 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~ 69 (303)
.++.||+||.++++++++.||.. |..|| ++||..|||.++++|+.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999974 99999 89999999999988863
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.12 E-value=4.2e-07 Score=70.59 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC----ceecc---CCCCHHHHHhHHH
Q 022044 26 REKWTEEEHQRFLDALKMYGRG----WRQIE---GTKTAVQIRSHAQ 65 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~----WkkIa---gTRT~~QVRSHAQ 65 (303)
...||.||..+|..||..|+++ |.+|| |.||+.||+.|+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3479999999999999999985 99999 8899999999986
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.57 E-value=3.6e-05 Score=70.88 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcC------ceecc---CCCCHHHHHhHHHHHhHH
Q 022044 25 QREKWTEEEHQRFLDALKMYGRG------WRQIE---GTKTAVQIRSHAQKFFSK 70 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~------WkkIa---gTRT~~QVRSHAQKYF~K 70 (303)
.++.||+||.+..|+.+++||.. |..|| +.||..|||.|+..|+.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 45689999999999999999875 99999 899999999999999865
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.34 E-value=0.0033 Score=59.08 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-ceecc---CCCCHHHHHhHHHHHhHHH
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQIE---GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-WkkIa---gTRT~~QVRSHAQKYF~Kl 71 (303)
+.||..+-..|+.|+++||++ |..|| ++||+..|+-|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 579999999999999999997 99999 8999999999999888765
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.51 E-value=0.012 Score=50.16 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--cC-ceecc-----CCCCHHHHHhHHHHHhHHHHHhhC
Q 022044 25 QREKWTEEEHQRFLDALKMYG--RG-WRQIE-----GTKTAVQIRSHAQKFFSKVVRESN 76 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yG--r~-WkkIa-----gTRT~~QVRSHAQKYF~Kl~k~~~ 76 (303)
....||+.|-.+|+.|+.+|| .+ |..|+ ..||...|+.+++-|.....+...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~ 65 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALK 65 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999 44 99997 589999999999988877666543
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.37 E-value=0.0027 Score=62.99 Aligned_cols=38 Identities=21% Similarity=0.466 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcCceecc---CCCCHHHHHhH
Q 022044 26 REKWTEEEHQRFLDALKMYGRGWRQIE---GTKTAVQIRSH 63 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~WkkIa---gTRT~~QVRSH 63 (303)
...||++|+.+|.+||..||++|.+|+ ++||..+|-.|
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~y 229 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKF 229 (482)
T ss_dssp -----------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHH
Confidence 458999999999999999999999999 99999999865
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.04 E-value=0.018 Score=42.00 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CcC-ceecc----CCCCHHHHHhHHHHHh
Q 022044 26 REKWTEEEHQRFLDALKMY--------GRG-WRQIE----GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~y--------Gr~-WkkIa----gTRT~~QVRSHAQKYF 68 (303)
|..||+||....++.|..| |.. |+.|+ +.+|-.++|.|.-|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5679999999999999999 434 99999 7899999999998876
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=94.89 E-value=0.04 Score=44.03 Aligned_cols=51 Identities=12% Similarity=0.320 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcCceecc--------CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 25 QREKWTEEEHQRFLDALKMYGRGWRQIE--------GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr~WkkIa--------gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
+...||.||-+.+++-.++||..|-.|+ +.||..+|+.+.-..-.+|.+..
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999999999 26999999998777777776654
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.79 E-value=0.029 Score=52.75 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---C-ceecc---------------CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 25 QREKWTEEEHQRFLDALKMYGR---G-WRQIE---------------GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr---~-WkkIa---------------gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
+...||+||++.||-+|-+||- + |..|- .+||+.+|..|++--..-+.|..
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 4457999999999999999999 7 99994 59999999999986666666664
No 52
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.92 E-value=0.17 Score=41.00 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc---Cceecc---CCCCHHHHHhHHHHHhHHHHHh
Q 022044 27 EKWTEEEHQRFLDALKMYGR---GWRQIE---GTKTAVQIRSHAQKFFSKVVRE 74 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr---~WkkIa---gTRT~~QVRSHAQKYF~Kl~k~ 74 (303)
..||.||.+-.|.+.++-|. .|..|| +.|++.||.-+.|....=.++.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998 499999 7999999999999765544444
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.43 E-value=0.098 Score=50.62 Aligned_cols=45 Identities=29% Similarity=0.596 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-ceecc---C-CCCHHHHHhHHHHHhHHH
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQIE---G-TKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-WkkIa---g-TRT~~QVRSHAQKYF~Kl 71 (303)
+.||.-+-..|+.|+++|||+ -..|+ + ++|+..|+-+|+-|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999998 89999 5 999999999998887754
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=91.93 E-value=0.25 Score=37.17 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=34.0
Q ss_pred cCCCCCCHHHHHHHHHHHHH----hC---c---Cceecc-------CCCCHHHHHhHHHH
Q 022044 24 KQREKWTEEEHQRFLDALKM----YG---R---GWRQIE-------GTKTAVQIRSHAQK 66 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~----yG---r---~WkkIa-------gTRT~~QVRSHAQK 66 (303)
+....||++|-..||++... |. + -|..|| -.||+.||+.-+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~n 61 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRN 61 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45678999999999999865 21 1 299999 48999999987653
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.76 E-value=0.49 Score=40.19 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC-ceecc-----------------CCCCHHHHHhHHHHHhHHHH
Q 022044 26 REKWTEEEHQRFLDALKMYGRG-WRQIE-----------------GTKTAVQIRSHAQKFFSKVV 72 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~-WkkIa-----------------gTRT~~QVRSHAQKYF~Kl~ 72 (303)
...||.+|...+|.|+.+||-+ |..|- .++++..+..+|. |..++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 4469999999999999999977 99887 2456678888885 555443
No 56
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=90.30 E-value=0.4 Score=37.73 Aligned_cols=43 Identities=33% Similarity=0.496 Sum_probs=33.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcC-ceec--c---------------------CCCCHHHHHhHHHH
Q 022044 24 KQREKWTEEEHQRFLDALKMYGRG-WRQI--E---------------------GTKTAVQIRSHAQK 66 (303)
Q Consensus 24 K~r~~WTeEEH~rFLegLe~yGr~-WkkI--a---------------------gTRT~~QVRSHAQK 66 (303)
+..+.|.++=...|++||+.|-.. .++| + ..||.-||-||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 456789999999999999998542 2222 1 58999999999984
No 57
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=88.99 E-value=0.74 Score=36.88 Aligned_cols=50 Identities=12% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCcCceecc--------CCCCHHHHHhHHHHHhHHHHHhh
Q 022044 26 REKWTEEEHQRFLDALKMYGRGWRQIE--------GTKTAVQIRSHAQKFFSKVVRES 75 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr~WkkIa--------gTRT~~QVRSHAQKYF~Kl~k~~ 75 (303)
...||.||-+.+++-.+.|+-.|--|+ +.||..++..+.-..-.+|.+..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999998 37999999999888888887764
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=84.17 E-value=0.22 Score=38.44 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc---Cceecc--CCCCHHHHHhHHHHHh
Q 022044 27 EKWTEEEHQRFLDALKMYGR---GWRQIE--GTKTAVQIRSHAQKFF 68 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr---~WkkIa--gTRT~~QVRSHAQKYF 68 (303)
..||.||.+-.|...++-|. .|..|| -.||+.||..+.|...
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLM 61 (70)
Confidence 47999999999999999998 599999 6799999999888643
No 59
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.30 E-value=0.79 Score=42.31 Aligned_cols=26 Identities=42% Similarity=0.910 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcC-ceecc
Q 022044 27 EKWTEEEHQRFLDALKMYGRG-WRQIE 52 (303)
Q Consensus 27 ~~WTeEEH~rFLegLe~yGr~-WkkIa 52 (303)
-.|+.+|...+|.|+-+||-| |..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999999 99998
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=71.23 E-value=5.5 Score=36.69 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---Cceecc-----CCCCHHHHHhHHH
Q 022044 26 REKWTEEEHQRFLDALKMYGR---GWRQIE-----GTKTAVQIRSHAQ 65 (303)
Q Consensus 26 r~~WTeEEH~rFLegLe~yGr---~WkkIa-----gTRT~~QVRSHAQ 65 (303)
.+.||+-|-++|..++.+||. .|..|. ..|+...|+.-++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 467999999999999999994 499997 5788877665544
No 61
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=59.75 E-value=3 Score=32.62 Aligned_cols=44 Identities=27% Similarity=0.531 Sum_probs=31.3
Q ss_pred Cceecc---C-----CCCHHHHHhHHHHHhHHHHHhhCCCCCCCcccccCCCCCCCC
Q 022044 47 GWRQIE---G-----TKTAVQIRSHAQKFFSKVVRESNGSSESSIMPIEIPPPRPKR 95 (303)
Q Consensus 47 ~WkkIa---g-----TRT~~QVRSHAQKYF~Kl~k~~~G~~~~~~~~i~iPppRpKR 95 (303)
.|+.|+ + |-...+++.|-+||+..-++-..|. .+..||+..|++
T Consensus 56 ~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~-----~~~~~p~~~~~~ 107 (107)
T 1ig6_A 56 QWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGE-----EDKPLPPIKPRK 107 (107)
T ss_dssp THHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHH-----TSSSSCTTCSCC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCCCCCCCC
Confidence 499999 2 3345799999999987766654432 345788887764
No 62
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=50.33 E-value=16 Score=35.29 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---C-ceecc---------------CCCCHHHHHhHHHHHhHHHHHhhC
Q 022044 25 QREKWTEEEHQRFLDALKMYGR---G-WRQIE---------------GTKTAVQIRSHAQKFFSKVVRESN 76 (303)
Q Consensus 25 ~r~~WTeEEH~rFLegLe~yGr---~-WkkIa---------------gTRT~~QVRSHAQKYF~Kl~k~~~ 76 (303)
....||++|.+.+|-+|-+||- + |.+|- .+||+..|.-++.-...-+.|...
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3557999999999999999998 6 99993 699999999999766655666644
No 63
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=41.84 E-value=27 Score=32.20 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.7
Q ss_pred ceecc---CCCCHHHHHhHHHHHhHHH
Q 022044 48 WRQIE---GTKTAVQIRSHAQKFFSKV 71 (303)
Q Consensus 48 WkkIa---gTRT~~QVRSHAQKYF~Kl 71 (303)
|+.|+ +.||...+|....||..+.
T Consensus 174 fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 99999 9999999999999887664
No 64
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=20.25 E-value=54 Score=27.96 Aligned_cols=20 Identities=35% Similarity=0.787 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHhCcC
Q 022044 28 KWTEEEHQRFLDALKMYGRG 47 (303)
Q Consensus 28 ~WTeEEH~rFLegLe~yGr~ 47 (303)
-||.||-.++||+++.|...
T Consensus 118 awS~eEaa~Yle~~k~~e~k 137 (146)
T 2a1i_A 118 AWSPEEAGRYLETYKAYEQK 137 (146)
T ss_dssp ESSHHHHHHHHHHHHTCCSS
T ss_pred ECCHHHHHHHHHHHHHhccC
Confidence 69999999999999999753
Done!