Your job contains 1 sequence.
>022045
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV
EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK
NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKV
DFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI
GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGS
FSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022045
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2200873 - symbol:RPL3B "R-protein L3 B" specie... 1268 3.2e-129 1
TAIR|locus:2018605 - symbol:RP1 "ribosomal protein 1" spe... 1237 6.1e-126 1
ASPGD|ASPL0000001032 - symbol:rpl3 species:162425 "Emeric... 978 1.7e-98 1
UNIPROTKB|P39023 - symbol:RPL3 "60S ribosomal protein L3"... 978 1.7e-98 1
UNIPROTKB|F1NEM8 - symbol:RPL3 "Uncharacterized protein" ... 975 3.5e-98 1
UNIPROTKB|F1NLW1 - symbol:RPL3 "Uncharacterized protein" ... 975 3.5e-98 1
RGD|735105 - symbol:Rpl3 "ribosomal protein L3" species:1... 975 3.5e-98 1
CGD|CAL0006304 - symbol:RPL3 species:5476 "Candida albica... 970 1.2e-97 1
UNIPROTKB|J9P6X5 - symbol:RPL3 "Uncharacterized protein" ... 970 1.2e-97 1
UNIPROTKB|Q59LS1 - symbol:RPL3 "Likely cytosolic ribosoma... 970 1.2e-97 1
UNIPROTKB|F1SNY2 - symbol:RPL3 "60S ribosomal protein L3"... 969 1.5e-97 1
UNIPROTKB|F1PLN2 - symbol:RPL3 "Uncharacterized protein" ... 968 2.0e-97 1
MGI|MGI:1351605 - symbol:Rpl3 "ribosomal protein L3" spec... 967 2.5e-97 1
UNIPROTKB|P39872 - symbol:RPL3 "60S ribosomal protein L3"... 963 6.6e-97 1
POMBASE|SPAPB8E5.06c - symbol:rpl302 "60S ribosomal prote... 963 6.6e-97 1
POMBASE|SPAC17A5.03 - symbol:rpl301 "60S ribosomal protei... 962 8.4e-97 1
UNIPROTKB|Q4R5Q0 - symbol:RPL3 "60S ribosomal protein L3"... 957 2.9e-96 1
ZFIN|ZDB-GENE-030131-1291 - symbol:rpl3 "ribosomal protei... 932 1.3e-93 1
DICTYBASE|DDB_G0291862 - symbol:rpl3 "60S ribosomal prote... 930 2.1e-93 1
UNIPROTKB|H7C422 - symbol:RPL3 "60S ribosomal protein L3"... 926 5.5e-93 1
WB|WBGene00004414 - symbol:rpl-3 species:6239 "Caenorhabd... 925 7.0e-93 1
SGD|S000005589 - symbol:RPL3 "Ribosomal 60S subunit prote... 907 5.7e-91 1
FB|FBgn0020910 - symbol:RpL3 "Ribosomal protein L3" speci... 905 9.3e-91 1
UNIPROTKB|Q3SZ10 - symbol:RPL3L "60S ribosomal protein L3... 885 1.2e-88 1
UNIPROTKB|Q92901 - symbol:RPL3L "60S ribosomal protein L3... 882 2.5e-88 1
UNIPROTKB|F1P5V2 - symbol:RPL3L "Uncharacterized protein"... 875 1.4e-87 1
GENEDB_PFALCIPARUM|PF10_0272 - symbol:PF10_0272 "ribosoma... 864 2.0e-86 1
UNIPROTKB|Q8IJC6 - symbol:PF10_0272 "60S ribosomal protei... 864 2.0e-86 1
UNIPROTKB|B5MCW2 - symbol:RPL3 "60S ribosomal protein L3"... 729 4.1e-72 1
UNIPROTKB|G5E9G0 - symbol:RPL3 "60S ribosomal protein L3"... 729 4.1e-72 1
UNIPROTKB|H7C3M2 - symbol:RPL3 "60S ribosomal protein L3"... 696 1.3e-68 1
UNIPROTKB|D4A136 - symbol:D4A136 "Uncharacterized protein... 560 3.4e-54 1
UNIPROTKB|H9L0E4 - symbol:H9L0E4 "Uncharacterized protein... 484 3.8e-46 1
UNIPROTKB|F8WCR1 - symbol:RPL3 "60S ribosomal protein L3"... 471 9.1e-45 1
RGD|1306315 - symbol:Rpl3l "ribosomal protein L3-like" sp... 435 5.9e-41 1
UNIPROTKB|F1N578 - symbol:F1N578 "Uncharacterized protein... 398 4.9e-37 1
UNIPROTKB|Q29293 - symbol:RPL3 "60S ribosomal protein L3"... 373 2.2e-34 1
RGD|1308952 - symbol:Rab11fip3 "RAB11 family interacting ... 348 1.2e-30 1
RGD|1591334 - symbol:Nme4 "NME/NM23 nucleoside diphosphat... 348 1.2e-30 1
UNIPROTKB|H3BQN3 - symbol:RPL3L "60S ribosomal protein L3... 111 4.9e-06 1
TIGR_CMR|BA_0110 - symbol:BA_0110 "ribosomal protein L3" ... 111 0.00029 1
>TAIR|locus:2200873 [details] [associations]
symbol:RPL3B "R-protein L3 B" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IDA;TAS] [GO:0009165 "nucleotide
biosynthetic process" evidence=RCA] [GO:0052541 "plant-type cell
wall cellulose metabolic process" evidence=RCA] [GO:0052546 "cell
wall pectin metabolic process" evidence=RCA] InterPro:IPR000597
Pfam:PF00297 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016020
GO:GO:0006412 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
EMBL:AC005850 GO:GO:0022625 eggNOG:COG0087 InterPro:IPR019926
PROSITE:PS00474 KO:K02925 ProtClustDB:CLSN2679512 EMBL:M32655
EMBL:BT003869 EMBL:BT005702 IPI:IPI00524843 PIR:B96641 PIR:JQ0772
RefSeq:NP_176352.1 UniGene:At.36412 ProteinModelPortal:P22738
SMR:P22738 STRING:P22738 PaxDb:P22738 PRIDE:P22738
EnsemblPlants:AT1G61580.1 GeneID:842454 KEGG:ath:AT1G61580
GeneFarm:277 TAIR:At1g61580 HOGENOM:HOG000107319 InParanoid:P22738
OMA:QETHSAM PhylomeDB:P22738 Genevestigator:P22738
GermOnline:AT1G61580 Uniprot:P22738
Length = 390
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 239/316 (75%), Positives = 264/316 (83%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETPP+ KTPRGLRSLCTVWAQHL+EE+RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
NW ET++GKKDIQ+QLEKMKKYC+VIR KKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
L EIQ+NGG +A+KVD+A FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK QE+HSAMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300
Query: 286 EFDRSVYLLSSLMGSF 301
E+DR+ ++ MG F
Sbjct: 301 EYDRTEKDITP-MGGF 315
>TAIR|locus:2018605 [details] [associations]
symbol:RP1 "ribosomal protein 1" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005773 "vacuole" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0022626 "cytosolic
ribosome" evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR000597
Pfam:PF00297 EMBL:CP002684 GO:GO:0005886 GO:GO:0009506
GO:GO:0005774 GO:GO:0005618 GO:GO:0005730 GO:GO:0006412
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AC005687
GO:GO:0022625 UniGene:At.21634 UniGene:At.48973 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 EMBL:M32654 EMBL:AY057487
EMBL:AF327421 EMBL:AF361101 EMBL:AF361809 EMBL:AY039544
EMBL:AY052743 EMBL:Z25950 IPI:IPI00540778 PIR:E96498 PIR:JQ0771
RefSeq:NP_001031146.1 RefSeq:NP_001185148.1 RefSeq:NP_001185149.1
RefSeq:NP_001185150.1 RefSeq:NP_001185151.1 RefSeq:NP_001185152.1
RefSeq:NP_175009.1 RefSeq:NP_973966.1 UniGene:At.24630
UniGene:At.7195 ProteinModelPortal:P17094 SMR:P17094 STRING:P17094
PaxDb:P17094 PRIDE:P17094 EnsemblPlants:AT1G43170.1
EnsemblPlants:AT1G43170.2 EnsemblPlants:AT1G43170.3
EnsemblPlants:AT1G43170.5 EnsemblPlants:AT1G43170.6
EnsemblPlants:AT1G43170.7 EnsemblPlants:AT1G43170.8
EnsemblPlants:AT1G43170.9 GeneID:840916 KEGG:ath:AT1G43170
GeneFarm:274 TAIR:At1g43170 InParanoid:P17094 KO:K02925 OMA:GFHQRTE
PhylomeDB:P17094 ProtClustDB:CLSN2679512 Genevestigator:P17094
GermOnline:AT1G43170 Uniprot:P17094
Length = 389
Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
Identities = 237/316 (75%), Positives = 261/316 (82%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETP + KTPRGLRSL TVWAQHL+EEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
NW +++DGKK IQAQLEKMKKY TVIR KKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK E+H+AMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMT 300
Query: 286 EFDRSVYLLSSLMGSF 301
E+DR+ ++ MG F
Sbjct: 301 EYDRTEKDVTP-MGGF 315
>ASPGD|ASPL0000001032 [details] [associations]
symbol:rpl3 species:162425 "Emericella nidulans"
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
EMBL:BN001301 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
ProteinModelPortal:C8V202 SMR:C8V202 EnsemblFungi:CADANIAT00006804
Uniprot:C8V202
Length = 392
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 186/313 (59%), Positives = 229/313 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSL +LPRKRA+RHRG+VK+FPKDDP KP LTA +GYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLAYLPRKRAARHRGRVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PG+K+HKKE EA T+IETPPL +TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGAKMHKKEIVEAATVIETPPLIAVGVVGYIETPRGLRSLATVWAEHLSDEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW ++G I LE++KKYCTV+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYAKKHSEENGAS-ITRDLERIKKYCTVVRVLAHTQIRKTPLKQKKAHL 179
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGGSVA+KVDFA FEK I ID +F+KDEMID+I VTKG G++GV +RWG +L
Sbjct: 180 MEIQVNGGSVAEKVDFARNLFEKPIEIDTIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKL 239
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT N K++++GK S E++ A T+
Sbjct: 240 PRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEAN-ASTD 298
Query: 287 FDRSVYLLSSLMG 299
FD S ++ L G
Sbjct: 299 FDVSKKQITPLGG 311
>UNIPROTKB|P39023 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR000597
Pfam:PF00297 Reactome:REACT_116125 GO:GO:0005730 GO:GO:0000184
GO:GO:0006413 GO:GO:0003723 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 HOVERGEN:HBG001864 CTD:6122 ChiTaRS:RPL3
EMBL:X73460 EMBL:AB062291 EMBL:CR456566 EMBL:AK315693 EMBL:AL022326
EMBL:BC002408 EMBL:BC006483 EMBL:BC008003 EMBL:BC012146
EMBL:BC012786 EMBL:BC013674 EMBL:BC014017 EMBL:BC015032
EMBL:BC015767 EMBL:BC063662 EMBL:BC088373 EMBL:BC107711 EMBL:M90054
EMBL:L22453 EMBL:AB007166 IPI:IPI00550021 PIR:S34195
RefSeq:NP_000958.1 UniGene:Hs.119598 ProteinModelPortal:P39023
SMR:P39023 IntAct:P39023 MINT:MINT-1145548 STRING:P39023
PhosphoSite:P39023 DMDM:730565 SWISS-2DPAGE:P39023 PaxDb:P39023
PRIDE:P39023 DNASU:6122 Ensembl:ENST00000216146 GeneID:6122
KEGG:hsa:6122 UCSC:uc003axh.3 GeneCards:GC22M039723
H-InvDB:HIX0172339 HGNC:HGNC:10332 HPA:HPA003365 MIM:604163
neXtProt:NX_P39023 PharmGKB:PA34713 InParanoid:P39023
PhylomeDB:P39023 GenomeRNAi:6122 NextBio:23777 ArrayExpress:P39023
Bgee:P39023 CleanEx:HS_RPL3 Genevestigator:P39023
GermOnline:ENSG00000100316 Uniprot:P39023
Length = 403
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 184/289 (63%), Positives = 223/289 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + +DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>UNIPROTKB|F1NEM8 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
GeneTree:ENSGT00390000017606 EMBL:AADN02006114 IPI:IPI00820650
Ensembl:ENSGALT00000019879 ArrayExpress:F1NEM8 Uniprot:F1NEM8
Length = 403
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 183/291 (62%), Positives = 223/291 (76%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLRS T++A+H+++E +RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHLM 167
W + ++GKK ++ MKKYC VIR KK+HLM
Sbjct: 122 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVMAHTQMRLLPLRQKKSHLM 181
Query: 168 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 227
EIQVNGG+VA+KVD+A E+Q+P+ +VF +DEMID+IGVTKGKGY+GV +RW +LP
Sbjct: 182 EIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP 241
Query: 228 RKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 278
RKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+ Q
Sbjct: 242 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYQ 292
>UNIPROTKB|F1NLW1 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
GeneTree:ENSGT00390000017606 EMBL:AADN02006114 IPI:IPI00592041
UniGene:Gga.990 PRIDE:F1NLW1 Ensembl:ENSGALT00000030605
NextBio:20821234 ArrayExpress:F1NLW1 Uniprot:F1NLW1
Length = 402
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 183/291 (62%), Positives = 223/291 (76%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 1 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 60
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLRS T++A+H+++E +RRFYKN
Sbjct: 61 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 120
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHLM 167
W + ++GKK ++ MKKYC VIR KK+HLM
Sbjct: 121 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVMAHTQMRLLPLRQKKSHLM 180
Query: 168 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 227
EIQVNGG+VA+KVD+A E+Q+P+ +VF +DEMID+IGVTKGKGY+GV +RW +LP
Sbjct: 181 EIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP 240
Query: 228 RKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 278
RKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+ Q
Sbjct: 241 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYQ 291
>RGD|735105 [details] [associations]
symbol:Rpl3 "ribosomal protein L3" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0071353 "cellular
response to interleukin-4" evidence=ISO] InterPro:IPR000597
Pfam:PF00297 RGD:735105 GO:GO:0005730 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319
GeneTree:ENSGT00390000017606 HOVERGEN:HBG001864 OrthoDB:EOG43XV3G
CTD:6122 EMBL:X62166 EMBL:BC058494 IPI:IPI00395285 PIR:JQ1536
RefSeq:NP_942048.1 UniGene:Rn.107726 ProteinModelPortal:P21531
SMR:P21531 STRING:P21531 PRIDE:P21531 Ensembl:ENSRNOT00000022949
Ensembl:ENSRNOT00000067032 GeneID:300079 KEGG:rno:300079
UCSC:RGD:735105 InParanoid:P21531 NextBio:646297
Genevestigator:P21531 GermOnline:ENSRNOG00000016896 Uniprot:P21531
Length = 403
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 184/289 (63%), Positives = 222/289 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + D GKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>CGD|CAL0006304 [details] [associations]
symbol:RPL3 species:5476 "Candida albicans" [GO:0009986 "cell
surface" evidence=IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0000027 "ribosomal large subunit
assembly" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
CGD:CAL0006304 GO:GO:0009986 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0032040 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
HOGENOM:HOG000107319 EMBL:AACQ01000248 EMBL:AACQ01000247
RefSeq:XP_710673.1 RefSeq:XP_710682.1 ProteinModelPortal:Q59LS1
SMR:Q59LS1 STRING:Q59LS1 GeneID:3647719 GeneID:3647728
KEGG:cal:CaO19.1601 KEGG:cal:CaO19.9169 Uniprot:Q59LS1
Length = 389
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 185/315 (58%), Positives = 233/315 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSLGFLPRKRA++ RG+VK+FPKD SKP LTAFLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EA T+++TPP+ +TPRGLRSL TVWA+HL+EEVRRRFYK
Sbjct: 61 DRPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW TD K ++ +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSGKYATD--AKQVETELARIKKYASVVRVLAHTQIKKTPLSQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGSV+ KVD+A FEK++ +D+VF++DEMID+I VTKG G+EGV RWG +L
Sbjct: 179 AEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V++TVARAGQNGYHHRT +N K+Y++GK + E++ A TE
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGTDEANGA-TE 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTINP-MGGF 311
>UNIPROTKB|J9P6X5 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474
GeneTree:ENSGT00390000017606 EMBL:AAEX03008562
Ensembl:ENSCAFT00000005720 OMA:TIFSEHI Uniprot:J9P6X5
Length = 403
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 182/289 (62%), Positives = 222/289 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + DDGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGAWHPARV+F++ARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQ 289
>UNIPROTKB|Q59LS1 [details] [associations]
symbol:RPL3 "Likely cytosolic ribosomal protein L3"
species:237561 "Candida albicans SC5314" [GO:0009986 "cell surface"
evidence=IDA] [GO:0032040 "small-subunit processome" evidence=IDA]
InterPro:IPR000597 Pfam:PF00297 CGD:CAL0006304 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0032040
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319
EMBL:AACQ01000248 EMBL:AACQ01000247 RefSeq:XP_710673.1
RefSeq:XP_710682.1 ProteinModelPortal:Q59LS1 SMR:Q59LS1
STRING:Q59LS1 GeneID:3647719 GeneID:3647728 KEGG:cal:CaO19.1601
KEGG:cal:CaO19.9169 Uniprot:Q59LS1
Length = 389
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 185/315 (58%), Positives = 233/315 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSLGFLPRKRA++ RG+VK+FPKD SKP LTAFLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EA T+++TPP+ +TPRGLRSL TVWA+HL+EEVRRRFYK
Sbjct: 61 DRPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW TD K ++ +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSGKYATD--AKQVETELARIKKYASVVRVLAHTQIKKTPLSQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGSV+ KVD+A FEK++ +D+VF++DEMID+I VTKG G+EGV RWG +L
Sbjct: 179 AEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V++TVARAGQNGYHHRT +N K+Y++GK + E++ A TE
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGTDEANGA-TE 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTINP-MGGF 311
>UNIPROTKB|F1SNY2 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 InterPro:IPR019926 PROSITE:PS00474
KO:K02925 OMA:GFHQRTE GeneTree:ENSGT00390000017606 CTD:6122
EMBL:CU686742 RefSeq:NP_001230992.1 UniGene:Ssc.53708
Ensembl:ENSSSCT00000000095 GeneID:396768 KEGG:ssc:396768
ArrayExpress:F1SNY2 Uniprot:F1SNY2
Length = 403
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 182/289 (62%), Positives = 222/289 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + +DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>UNIPROTKB|F1PLN2 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
GeneTree:ENSGT00390000017606 EMBL:AAEX03007312
ProteinModelPortal:F1PLN2 Ensembl:ENSCAFT00000002096 Uniprot:F1PLN2
Length = 403
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 182/288 (63%), Positives = 221/288 (76%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V+
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHLM 167
W + DDGKK ++ MKKYC VIR KKAHLM
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLM 181
Query: 168 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 227
EIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +LP
Sbjct: 182 EIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP 241
Query: 228 RKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
RKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 242 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>MGI|MGI:1351605 [details] [associations]
symbol:Rpl3 "ribosomal protein L3" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0071353 "cellular response to interleukin-4"
evidence=IDA] InterPro:IPR000597 Pfam:PF00297 MGI:MGI:1351605
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 EMBL:CH466550
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0071353 GO:GO:0022625
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
OMA:GFHQRTE HOGENOM:HOG000107319 GeneTree:ENSGT00390000017606
HOVERGEN:HBG001864 OrthoDB:EOG43XV3G CTD:6122 EMBL:Y00225
EMBL:U89417 EMBL:AK088993 EMBL:AK144518 EMBL:AK144816 EMBL:AK146502
EMBL:AK149494 EMBL:AK151596 EMBL:AK166433 EMBL:AK166825
EMBL:AK167787 EMBL:AK167947 EMBL:AK168040 EMBL:AK168059
EMBL:AK168126 EMBL:AK168128 EMBL:AK168224 EMBL:AK168744
EMBL:AK169060 EMBL:AK169235 EMBL:AK169321 EMBL:AK170819
EMBL:BC009655 EMBL:BC083134 EMBL:BC094059 EMBL:BC158039
IPI:IPI00321170 RefSeq:NP_038790.2 UniGene:Mm.290771
UniGene:Mm.396243 UniGene:Mm.474802 ProteinModelPortal:P27659
SMR:P27659 IntAct:P27659 STRING:P27659 PhosphoSite:P27659
PaxDb:P27659 PRIDE:P27659 Ensembl:ENSMUST00000081650 GeneID:27367
KEGG:mmu:27367 InParanoid:Q91VJ6 NextBio:305258 Bgee:P27659
CleanEx:MM_RPL3 Genevestigator:P27659 GermOnline:ENSMUSG00000057111
GermOnline:ENSMUSG00000060036 Uniprot:P27659
Length = 403
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 183/289 (63%), Positives = 221/289 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + D GKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>UNIPROTKB|P39872 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
OMA:GFHQRTE HOGENOM:HOG000107319 GeneTree:ENSGT00390000017606
HOVERGEN:HBG001864 OrthoDB:EOG43XV3G EMBL:Z29555 EMBL:AJ238851
EMBL:BT021012 EMBL:BC102253 IPI:IPI00687634 PIR:S50221
RefSeq:NP_777140.1 UniGene:Bt.3467 ProteinModelPortal:P39872
SMR:P39872 STRING:P39872 PRIDE:P39872 Ensembl:ENSBTAT00000004188
GeneID:282688 KEGG:bta:282688 CTD:6122 InParanoid:P39872
NextBio:20806356 ArrayExpress:P39872 Uniprot:P39872
Length = 403
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 181/289 (62%), Positives = 220/289 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME+QVNGG+VA+K+D+A E+Q+P+ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>POMBASE|SPAPB8E5.06c [details] [associations]
symbol:rpl302 "60S ribosomal protein L3" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
"translation" evidence=ISO] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] InterPro:IPR000597 Pfam:PF00297
PomBase:SPAPB8E5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003735 GO:GO:0002181 InterPro:IPR009000 SUPFAM:SSF50447
GO:GO:0022625 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
OMA:GFHQRTE HOGENOM:HOG000107319 OrthoDB:EOG4CG3HR EMBL:X57734
PIR:S25592 RefSeq:NP_594780.1 ProteinModelPortal:P36584 SMR:P36584
STRING:P36584 EnsemblFungi:SPAPB8E5.06c.1 GeneID:2543309
KEGG:spo:SPAPB8E5.06c NextBio:20804326 Uniprot:P36584
Length = 388
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 190/315 (60%), Positives = 229/315 (72%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVTIIETPP+ +TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + + + I +LE++KKYC+V+R KKAHL
Sbjct: 121 NW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG RL
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T+
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTD 297
Query: 287 FDRSVYLLSSLMGSF 301
FD + ++ MG F
Sbjct: 298 FDATEKRITP-MGGF 311
>POMBASE|SPAC17A5.03 [details] [associations]
symbol:rpl301 "60S ribosomal protein L3" species:4896
"Schizosaccharomyces pombe" [GO:0000027 "ribosomal large subunit
assembly" evidence=ISO] [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
"translation" evidence=ISO] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] InterPro:IPR000597 Pfam:PF00297
PomBase:SPAC17A5.03 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003735 GO:GO:0002181 GO:GO:0000027 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 eggNOG:COG0087 InterPro:IPR019926
PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319 OMA:QETHSAM
EMBL:U00798 PIR:T37818 RefSeq:NP_593471.1 ProteinModelPortal:P40372
SMR:P40372 IntAct:P40372 STRING:P40372 PRIDE:P40372
EnsemblFungi:SPAC17A5.03.1 GeneID:2542265 KEGG:spo:SPAC17A5.03
OrthoDB:EOG4CG3HR NextBio:20803329 Uniprot:P40372
Length = 388
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 189/315 (60%), Positives = 229/315 (72%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVT+IETPP+ +TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + + + I +LE++KKYC+V+R KKAHL
Sbjct: 121 NW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG RL
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T+
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTD 297
Query: 287 FDRSVYLLSSLMGSF 301
FD + ++ MG F
Sbjct: 298 FDATEKRITP-MGGF 311
>UNIPROTKB|Q4R5Q0 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9541 "Macaca
fascicularis" [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 HOVERGEN:HBG001864 EMBL:AB169493
ProteinModelPortal:Q4R5Q0 SMR:Q4R5Q0 PRIDE:Q4R5Q0 Uniprot:Q4R5Q0
Length = 403
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 182/289 (62%), Positives = 221/289 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE AVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + +DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
>ZFIN|ZDB-GENE-030131-1291 [details] [associations]
symbol:rpl3 "ribosomal protein L3" species:7955
"Danio rerio" [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0031017
"exocrine pancreas development" evidence=IMP] InterPro:IPR000597
Pfam:PF00297 ZFIN:ZDB-GENE-030131-1291 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0031017 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOVERGEN:HBG001864
CTD:6122 EMBL:AY561514 IPI:IPI00511925 RefSeq:NP_001001590.1
UniGene:Dr.141319 ProteinModelPortal:Q6Q418 SMR:Q6Q418
STRING:Q6Q418 PRIDE:Q6Q418 GeneID:322571 KEGG:dre:322571
InParanoid:Q6Q418 NextBio:20807854 ArrayExpress:Q6Q418 Bgee:Q6Q418
Uniprot:Q6Q418
Length = 403
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 179/311 (57%), Positives = 221/311 (71%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF P HGSLGFLPRKR RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPLHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVT++ETPP+ TPRGLRS T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTVVETPPMIVVGVVGYVMTPRGLRSFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + ++GKK ++ MKKYC +IR KK+HL
Sbjct: 121 NWYKSKKKAFTKYCKRWQDEEGKKQLEKDFSSMKKYCQIIRIIAHTQMRLLPHRQKKSHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGG+++ KVD+A E+ IPI VF +DEMID+IGVTKG G +GV +RW +L
Sbjct: 181 MEIQLNGGTISDKVDWAREKLEQSIPIANVFSQDEMIDVIGVTKGHGCKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G + +
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGVGYHNKDGKLVK 300
Query: 287 FDRSV-YLLSS 296
+ S Y LS+
Sbjct: 301 NNASTDYDLSN 311
>DICTYBASE|DDB_G0291862 [details] [associations]
symbol:rpl3 "60S ribosomal protein L3" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000597 Pfam:PF00297
dictyBase:DDB_G0291862 GO:GO:0005615 GenomeReviews:CM000155_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000186
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
EMBL:L08391 PIR:JC4254 RefSeq:XP_629921.1 ProteinModelPortal:P34113
SMR:P34113 STRING:P34113 PRIDE:P34113 EnsemblProtists:DDB0191094
GeneID:8628422 KEGG:ddi:DDB_G0291862 ProtClustDB:PTZ00103
Uniprot:P34113
Length = 398
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 181/321 (56%), Positives = 229/321 (71%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHG+LGF PRKRA+RH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+
Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSK+HKKE EAVTIIE PP+ +T +GL++ TVWAQHL++ RRR YK
Sbjct: 61 EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYK 120
Query: 121 NWCXXXXXXXXXXXXXX-ETDDGKKDIQAQLEKMKKYCTVIR--------------KKAH 165
NW ET++GKK I+A L+ +KK C+V+R KKAH
Sbjct: 121 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
++EIQVNGGS+ +KV+FA FEK + + VF ++E+ID+IGVTKGKG+ GV+ RWGV +
Sbjct: 181 VLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRK 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----H 281
LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A E
Sbjct: 241 LPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQIS 300
Query: 282 SAMTEFDRSVYLLSSLMGSFS 302
+ TEFD + ++ MG F+
Sbjct: 301 TGKTEFDLTEKTINP-MGGFA 320
>UNIPROTKB|H7C422 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 ChiTaRS:RPL3
EMBL:AL022326 HGNC:HGNC:10332 ProteinModelPortal:H7C422
PRIDE:H7C422 Ensembl:ENST00000453303 Bgee:H7C422 Uniprot:H7C422
Length = 305
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 175/277 (63%), Positives = 211/277 (76%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 29 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 88
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYKN
Sbjct: 89 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 148
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHLM 167
W + +DGKK ++ MKKYC VIR KKAHLM
Sbjct: 149 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLM 208
Query: 168 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 227
EIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +LP
Sbjct: 209 EIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP 268
Query: 228 RKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRT 264
RKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRT
Sbjct: 269 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRT 305
>WB|WBGene00004414 [details] [associations]
symbol:rpl-3 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0032502 "developmental process" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR000597
Pfam:PF00297 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006412 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 GeneTree:ENSGT00390000017606 EMBL:Z69337
EMBL:Z69336 EMBL:Z49936 EMBL:Z66495 PIR:T19771
RefSeq:NP_001021254.1 UniGene:Cel.17929 ProteinModelPortal:P50880
SMR:P50880 DIP:DIP-24912N IntAct:P50880 MINT:MINT-1054211
STRING:P50880 PaxDb:P50880 PRIDE:P50880 EnsemblMetazoa:F13B10.2a.1
EnsemblMetazoa:F13B10.2a.2 EnsemblMetazoa:F13B10.2a.3 GeneID:175501
KEGG:cel:CELE_F13B10.2 UCSC:F13B10.2d.2 CTD:175501
WormBase:F13B10.2a InParanoid:P50880 NextBio:888420
ArrayExpress:P50880 Uniprot:P50880
Length = 401
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 172/291 (59%), Positives = 214/291 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAVTI+ETPP+ TP+G R+L T+WA+HL+EE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + +DGKK I+A K+KKYC+ IR KKAHL
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
+EIQVNGG++ QKVD+A EKQ+ +D VF +DEMID IGVT+G G++GV +RW +L
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS 277
PRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSA 291
>SGD|S000005589 [details] [associations]
symbol:RPL3 "Ribosomal 60S subunit protein L3" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;TAS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0002181 "cytoplasmic translation" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=TAS] InterPro:IPR000597 Pfam:PF00297
SGD:S000005589 EMBL:BK006948 GO:GO:0003735 GO:GO:0002181
EMBL:Z70678 PDB:4B6A PDBsum:4B6A GO:GO:0000027 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 eggNOG:COG0087 InterPro:IPR019926
PROSITE:PS00474 PDB:1K5Y PDB:1S1I PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:1K5Y PDBsum:1S1I PDBsum:3IZS PDBsum:3O58
PDBsum:3O5H PDBsum:3U5E PDBsum:3U5I KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 OrthoDB:EOG4CG3HR GeneTree:ENSGT00390000017606
EMBL:J01351 EMBL:Z74971 PIR:S66946 RefSeq:NP_014706.1
ProteinModelPortal:P14126 SMR:P14126 DIP:DIP-6264N IntAct:P14126
MINT:MINT-604187 STRING:P14126 PaxDb:P14126 PeptideAtlas:P14126
PRIDE:P14126 EnsemblFungi:YOR063W GeneID:854229 KEGG:sce:YOR063W
EvolutionaryTrace:P14126 NextBio:976109 Genevestigator:P14126
GermOnline:YOR063W Uniprot:P14126
Length = 387
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 178/315 (56%), Positives = 224/315 (71%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ R +VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+ +TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW DG I+ +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSAKY-AQDGA-GIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGS+++KVD+A FEK + +D+VF+++EMID I VTKG G+EGV RWG +L
Sbjct: 179 AEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK E++ A T
Sbjct: 239 PRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-TS 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTITP-MGGF 311
>FB|FBgn0020910 [details] [associations]
symbol:RpL3 "Ribosomal protein L3" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS;NAS] [GO:0006412 "translation" evidence=ISS;NAS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS]
[GO:0022626 "cytosolic ribosome" evidence=NAS] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR000597 Pfam:PF00297 EMBL:AE014297 GO:GO:0051298
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925
GeneTree:ENSGT00390000017606 CTD:6122 EMBL:AF016835 EMBL:BT011339
RefSeq:NP_524316.1 RefSeq:NP_731547.1 RefSeq:NP_731550.2
UniGene:Dm.6703 ProteinModelPortal:O16797 SMR:O16797 DIP:DIP-17151N
IntAct:O16797 MINT:MINT-277369 STRING:O16797 PaxDb:O16797
PRIDE:O16797 EnsemblMetazoa:FBtr0082346 GeneID:41347
KEGG:dme:Dmel_CG4863 FlyBase:FBgn0020910 InParanoid:O16797
OMA:THILRDV OrthoDB:EOG4NCJV4 PhylomeDB:O16797 ChiTaRS:RPL3
GenomeRNAi:41347 NextBio:823392 Bgee:O16797 GermOnline:CG4863
Uniprot:O16797
Length = 416
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 172/288 (59%), Positives = 206/288 (71%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGS+ F P+KR++RHRGKVKAFPKDD SKP LT F+GYKAGMTHIVR+
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVT++ETPP+ +TP GLR+L VWAQHL+EE RRRFYK
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW D GKK I+ KM +YC VIR KKAH+
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGGS+ KV +A EK I + VF +DEMID +GVTKGKG++GV +RW +L
Sbjct: 181 MEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 274
PRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 288
>UNIPROTKB|Q3SZ10 [details] [associations]
symbol:RPL3L "60S ribosomal protein L3-like" species:9913
"Bos taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319
EMBL:BC103272 IPI:IPI00711650 RefSeq:NP_001030578.1
UniGene:Bt.98804 ProteinModelPortal:Q3SZ10 SMR:Q3SZ10 STRING:Q3SZ10
PRIDE:Q3SZ10 Ensembl:ENSBTAT00000012541 GeneID:618440
KEGG:bta:618440 CTD:6123 GeneTree:ENSGT00390000017606
HOVERGEN:HBG001864 InParanoid:Q3SZ10 OMA:AQEKRVF OrthoDB:EOG43XV3G
NextBio:20901186 Uniprot:Q3SZ10
Length = 407
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 166/289 (57%), Positives = 207/289 (71%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPL TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
+W DGKK +Q MKKYC VIR KKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME+Q+NGG+VA+KV +A EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW +L
Sbjct: 181 MEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKIY++G+
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR 289
>UNIPROTKB|Q92901 [details] [associations]
symbol:RPL3L "60S ribosomal protein L3-like" species:9606
"Homo sapiens" [GO:0006412 "translation" evidence=NAS;TAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000597 Pfam:PF00297 Reactome:REACT_116125 GO:GO:0000184
GO:GO:0006413 GO:GO:0003723 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 EMBL:AE006640
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
HOGENOM:HOG000107319 CTD:6123 HOVERGEN:HBG001864 OMA:AQEKRVF
OrthoDB:EOG43XV3G EMBL:U65581 EMBL:BC050413 IPI:IPI00219335
RefSeq:NP_005052.1 UniGene:Hs.657266 ProteinModelPortal:Q92901
SMR:Q92901 IntAct:Q92901 STRING:Q92901 PhosphoSite:Q92901
DMDM:2500230 PaxDb:Q92901 PeptideAtlas:Q92901 PRIDE:Q92901
Ensembl:ENST00000268661 GeneID:6123 KEGG:hsa:6123 UCSC:uc002cnh.3
GeneCards:GC16M001993 HGNC:HGNC:10351 HPA:HPA049136
neXtProt:NX_Q92901 PharmGKB:PA34746 InParanoid:Q92901
PhylomeDB:Q92901 GenomeRNAi:6123 NextBio:23783 Bgee:Q92901
CleanEx:HS_RPL3L Genevestigator:Q92901 GermOnline:ENSG00000140986
Uniprot:Q92901
Length = 407
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 166/289 (57%), Positives = 206/289 (71%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPL TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
+W DGKK +Q MKKYC VIR KKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGG+VA+KV +A EKQ+P+ +VF + E+ID+I VTKG+G +GV +RW +L
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
PRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKI+++G+
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR 289
>UNIPROTKB|F1P5V2 [details] [associations]
symbol:RPL3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625 InterPro:IPR019926
PROSITE:PS00474 GeneTree:ENSGT00390000017606 OMA:AQEKRVF
EMBL:AADN02023671 IPI:IPI00587737 Ensembl:ENSGALT00000008758
Uniprot:F1P5V2
Length = 421
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 165/287 (57%), Positives = 206/287 (71%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SH KF PRHG LGFLP KR+ RHRGKVK +PKDDPSKP LTAF+GYKAGMTH +R+V
Sbjct: 21 SHHKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPVHLTAFMGYKAGMTHTLREVH 80
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PG ++ K+E EAVTIIETPP+ TP+GLR+ TV+A+H+++E RRRFYKN
Sbjct: 81 RPGLRISKREEVEAVTIIETPPMVVVGVVGYIDTPKGLRNFKTVFAEHISDECRRRFYKN 140
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHLM 167
W + +DGKK ++ MKKYC VIR KKAH+M
Sbjct: 141 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFAAMKKYCKVIRVIMHTQMKLLPLRQKKAHVM 200
Query: 168 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 227
EIQ+NGG+VA+KVD+ EKQI + +VF ++EMID+IGVTKG G +GV +RW +LP
Sbjct: 201 EIQLNGGTVAEKVDWVRERLEKQISVHSVFSQNEMIDVIGVTKGHGMKGVTSRWHSKKLP 260
Query: 228 RKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 274
RKTH+GLRKVACIGAWHPARV ++VARAGQ GYHHRTE+NKKI+++G
Sbjct: 261 RKTHKGLRKVACIGAWHPARVGYSVARAGQKGYHHRTELNKKIFRIG 307
>GENEDB_PFALCIPARUM|PF10_0272 [details] [associations]
symbol:PF10_0272 "ribosomal protein L3,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0003735
EMBL:AE014185 InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 ProtClustDB:PTZ00103 RefSeq:XP_001347556.1
ProteinModelPortal:Q8IJC6 SMR:Q8IJC6 IntAct:Q8IJC6
MINT:MINT-1573865 PRIDE:Q8IJC6 EnsemblProtists:PF10_0272:mRNA
GeneID:810429 KEGG:pfa:PF10_0272 EuPathDB:PlasmoDB:PF3D7_1027800
Uniprot:Q8IJC6
Length = 386
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 171/315 (54%), Positives = 215/315 (68%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHGSLGFLPRKR R RGK+++FPKDD KP TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSKLHKKE EA TIIE P+ +TP+GLR L TVWA H+++E RRR+YK
Sbjct: 61 DKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + K+ L++++KYCTV+R KKAH+
Sbjct: 121 NW---YKSEKKAFTKSLNVPEATKN--CLLKRIEKYCTVLRAICHTQPSKTPLRMKKAHI 175
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME+Q+NGGS+ +K++F EK +P+ VF +EMID+I VTKG G +GVV+R+GV RL
Sbjct: 176 MEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKRL 235
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPARV F + R GQ GY HRTE NKKIY++G + + +SA T+
Sbjct: 236 PRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKT-DKNSASTD 294
Query: 287 FDRSVYLLSSLMGSF 301
D + ++ MG F
Sbjct: 295 ADITEKKITP-MGGF 308
>UNIPROTKB|Q8IJC6 [details] [associations]
symbol:PF10_0272 "60S ribosomal protein L3, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISS] InterPro:IPR000597
Pfam:PF00297 GO:GO:0006412 GO:GO:0003735 EMBL:AE014185
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625 InterPro:IPR019926
PROSITE:PS00474 KO:K02925 OMA:GFHQRTE HOGENOM:HOG000107319
ProtClustDB:PTZ00103 RefSeq:XP_001347556.1
ProteinModelPortal:Q8IJC6 SMR:Q8IJC6 IntAct:Q8IJC6
MINT:MINT-1573865 PRIDE:Q8IJC6 EnsemblProtists:PF10_0272:mRNA
GeneID:810429 KEGG:pfa:PF10_0272 EuPathDB:PlasmoDB:PF3D7_1027800
Uniprot:Q8IJC6
Length = 386
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 171/315 (54%), Positives = 215/315 (68%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHGSLGFLPRKR R RGK+++FPKDD KP TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSKLHKKE EA TIIE P+ +TP+GLR L TVWA H+++E RRR+YK
Sbjct: 61 DKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW + K+ L++++KYCTV+R KKAH+
Sbjct: 121 NW---YKSEKKAFTKSLNVPEATKN--CLLKRIEKYCTVLRAICHTQPSKTPLRMKKAHI 175
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME+Q+NGGS+ +K++F EK +P+ VF +EMID+I VTKG G +GVV+R+GV RL
Sbjct: 176 MEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKRL 235
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPARV F + R GQ GY HRTE NKKIY++G + + +SA T+
Sbjct: 236 PRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKT-DKNSASTD 294
Query: 287 FDRSVYLLSSLMGSF 301
D + ++ MG F
Sbjct: 295 ADITEKKITP-MGGF 308
>UNIPROTKB|B5MCW2 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000597
Pfam:PF00297 GO:GO:0005737 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 HOGENOM:HOG000107319
HOVERGEN:HBG001864 OrthoDB:EOG43XV3G ChiTaRS:RPL3 EMBL:AL022326
HGNC:HGNC:10332 IPI:IPI00877787 ProteinModelPortal:B5MCW2
SMR:B5MCW2 STRING:B5MCW2 Ensembl:ENST00000402527
ArrayExpress:B5MCW2 Bgee:B5MCW2 Uniprot:B5MCW2
Length = 272
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 144/267 (53%), Positives = 187/267 (70%)
Query: 53 MTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE 112
MTHIVR+V++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++
Sbjct: 1 MTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISD 60
Query: 113 EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR----------- 161
E +RRFYKNW + +DGKK ++ MKKYC VIR
Sbjct: 61 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP 120
Query: 162 ---KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVV 218
KKAHLMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV
Sbjct: 121 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 180
Query: 219 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA-- 276
+RW +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 181 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 240
Query: 277 ----SQESHSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 241 IKDGKLIKNNASTDYDLSDKSINPLGG 267
>UNIPROTKB|G5E9G0 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000597
Pfam:PF00297 GO:GO:0005737 GO:GO:0005730 GO:GO:0006412
EMBL:CH471095 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 ChiTaRS:RPL3
EMBL:AL022326 UniGene:Hs.119598 HGNC:HGNC:10332 EMBL:AB266619
ProteinModelPortal:G5E9G0 SMR:G5E9G0 PRIDE:G5E9G0
Ensembl:ENST00000401609 ArrayExpress:G5E9G0 Bgee:G5E9G0
Uniprot:G5E9G0
Length = 351
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 144/267 (53%), Positives = 187/267 (70%)
Query: 53 MTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE 112
MTHIVR+V++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++
Sbjct: 1 MTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISD 60
Query: 113 EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR----------- 161
E +RRFYKNW + +DGKK ++ MKKYC VIR
Sbjct: 61 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP 120
Query: 162 ---KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVV 218
KKAHLMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV
Sbjct: 121 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 180
Query: 219 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA-- 276
+RW +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 181 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 240
Query: 277 ----SQESHSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 241 IKDGKLIKNNASTDYDLSDKSINPLGG 267
>UNIPROTKB|H7C3M2 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 ChiTaRS:RPL3 EMBL:AL022326 HGNC:HGNC:10332
ProteinModelPortal:H7C3M2 PRIDE:H7C3M2 Ensembl:ENST00000427905
Uniprot:H7C3M2
Length = 261
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 135/228 (59%), Positives = 167/228 (73%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 34 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 93
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYKN
Sbjct: 94 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 153
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHLM 167
W + +DGKK ++ MKKYC VIR KKAHLM
Sbjct: 154 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLM 213
Query: 168 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYE 215
EIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+
Sbjct: 214 EIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 261
>UNIPROTKB|D4A136 [details] [associations]
symbol:D4A136 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000597
Pfam:PF00297 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 GeneTree:ENSGT00390000017606
OrthoDB:EOG43XV3G IPI:IPI00559256 PRIDE:D4A136
Ensembl:ENSRNOT00000051650 Uniprot:D4A136
Length = 380
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 137/322 (42%), Positives = 185/322 (57%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MS+R F PRHGSLGF P+K + H GKVK FPKDD SKP LT FL +KA MTHI++ V
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++P SK++KKE E V I+ETPP+ + PRGL + V+A+H++ + ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVI--------------RKKAHL 166
NW D GK+ ++ + + MKKYC VI +KKAHL
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR- 225
MEIQV G G ++ AV Q DE+ID+I TKG GY+GV TR + R
Sbjct: 175 MEIQVMGHC---------GLSWRE----AVNQ-DEIIDVIKETKGNGYKGV-TRVDIQRN 219
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 279
P + G K+ C+GAWHPARV+F+VA+ GQ GYHH + NKKI K+G+
Sbjct: 220 CPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLIKDGKLI 277
Query: 280 SHSAMTEF---DRSVYLLSSLM 298
++A TE+ D+S+ LL +
Sbjct: 278 KNNAPTEYHLSDKSINLLGGFV 299
>UNIPROTKB|H9L0E4 [details] [associations]
symbol:H9L0E4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474
GeneTree:ENSGT00390000017606 EMBL:AADN02062084
Ensembl:ENSGALT00000022725 Uniprot:H9L0E4
Length = 237
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 92/145 (63%), Positives = 117/145 (80%)
Query: 161 RKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 220
+KK+HLMEIQVNGG+VA+KVD+A E+Q+P+ +VF +DEMID+IGVTKGKGY+GV +R
Sbjct: 9 QKKSHLMEIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKGYKGVTSR 68
Query: 221 WGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES 280
W +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+ Q
Sbjct: 69 WHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYQIK 128
Query: 281 ------HSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 129 DGKLIKNNASTDYDLSDKSINPLGG 153
>UNIPROTKB|F8WCR1 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 ChiTaRS:RPL3 EMBL:AL022326 HGNC:HGNC:10332
IPI:IPI00878827 ProteinModelPortal:F8WCR1 SMR:F8WCR1 PRIDE:F8WCR1
Ensembl:ENST00000420536 ArrayExpress:F8WCR1 Bgee:F8WCR1
Uniprot:F8WCR1
Length = 180
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 N 121
N
Sbjct: 121 N 121
>RGD|1306315 [details] [associations]
symbol:Rpl3l "ribosomal protein L3-like" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA;ISO]
InterPro:IPR000597 Pfam:PF00297 RGD:1306315 GO:GO:0006412
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625
InterPro:IPR019926 PROSITE:PS00474 GeneTree:ENSGT00390000017606
IPI:IPI00369231 PRIDE:D4A9G1 Ensembl:ENSRNOT00000019660
UCSC:RGD:1306315 OrthoDB:EOG4M3999 Uniprot:D4A9G1
Length = 240
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 75/115 (65%), Positives = 98/115 (85%)
Query: 161 RKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 220
+KKAH+MEIQ+NGG+VA+KV +A EKQ+P+ +VF + E+ID+I VTKG+G +GV +R
Sbjct: 8 QKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSR 67
Query: 221 WGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
W +LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKIY++G+
Sbjct: 68 WHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR 122
>UNIPROTKB|F1N578 [details] [associations]
symbol:F1N578 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 GeneTree:ENSGT00390000017606
EMBL:DAAA02032569 IPI:IPI00686963 Ensembl:ENSBTAT00000038407
Uniprot:F1N578
Length = 340
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 91/231 (39%), Positives = 135/231 (58%)
Query: 20 KRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTII 79
K +S+H+GKV FPKD SKP L+AFLGY+AGMTH+VR V++PGSK+HKKE E VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 80 ETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXET 139
ET P +T GL++ +V+A+H++ E +R K +
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--------YKTNTSPNTKA 112
Query: 140 DDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQK 199
+ A L +M + +KKAHL E QVN G VA K+D+A+ E+Q+P++ +F+
Sbjct: 113 RSSWRGTSA-LTQMC-LLPLCQKKAHLTESQVNRGPVA-KLDWAHKKLEQQVPVNHIFRV 169
Query: 200 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSF 250
+ +IG TKGK Y+G+ + W ++P KTH+ + ACI W V++
Sbjct: 170 RRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI--WDGLSVAW 217
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 51/115 (44%), Positives = 74/115 (64%)
Query: 161 RKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 220
+KKAHL E QVN G VA K+D+A+ E+Q+P++ +F+ + +IG TKGK Y+G+ +
Sbjct: 132 QKKAHLTESQVNRGPVA-KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSH 189
Query: 221 WGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
W ++P KTH+ + ACI W +VA A Q G HH T +NKKIYK+G+
Sbjct: 190 WYTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQ 237
>UNIPROTKB|Q29293 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 HOVERGEN:HBG001864 EMBL:F14648
Uniprot:Q29293
Length = 130
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 64/86 (74%), Positives = 78/86 (90%)
Query: 190 QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS 249
++P++ VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPAR +
Sbjct: 1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXA 60
Query: 250 FTVARAGQNGYHHRTEMNKKIYKLGK 275
F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 61 FSVARAGQKGYHHRTEINKKIYKIGQ 86
>RGD|1308952 [details] [associations]
symbol:Rab11fip3 "RAB11 family interacting protein 3 (class II)"
species:10116 "Rattus norvegicus" [GO:0000910 "cytokinesis"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0004550 "nucleoside diphosphate kinase activity"
evidence=IEA] [GO:0005509 "calcium ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005768 "endosome" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0005825 "half bridge of spindle pole
body" evidence=ISO] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228
"UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP
biosynthetic process" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0016020 "membrane" evidence=ISO] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017137 "Rab GTPase
binding" evidence=ISO] [GO:0030306 "ADP-ribosylation factor
binding" evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
[GO:0032154 "cleavage furrow" evidence=ISO] [GO:0032456 "endocytic
recycling" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] [GO:0055037 "recycling endosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000597 InterPro:IPR001564 InterPro:IPR002048
InterPro:IPR002198 Pfam:PF00106 Pfam:PF00297 Pfam:PF00334
PRINTS:PR01243 PROSITE:PS50222 SMART:SM00562 InterPro:IPR016040
RGD:1308952 RGD:1591334 RGD:71002 GO:GO:0005739 GO:GO:0005524
GO:GO:0032403 Gene3D:3.40.50.720 GO:GO:0006412 GO:GO:0016491
GO:GO:0005840 GO:GO:0003735 GO:GO:0055114 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006183 GO:GO:0004550 GO:GO:0006241
GO:GO:0006228 Gene3D:3.30.70.141 SUPFAM:SSF54919 InterPro:IPR019926
PROSITE:PS00474 EMBL:AC126071 UniGene:Rn.17377 EMBL:AY383698
IPI:IPI00421361 HSSP:P15531 SMR:Q6TXF6 STRING:Q6TXF6
Ensembl:ENSRNOT00000027501 Genevestigator:Q6TXF6 Uniprot:Q6TXF6
Length = 867
Score = 348 (127.6 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 69/132 (52%), Positives = 94/132 (71%)
Query: 174 GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 233
G+VA+K+D+A P++ VF + EMID++G+TKGKGY+GV +RW + PRKTH+G
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYKGVTSRWHTKKPPRKTHQG 386
Query: 234 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEF 287
LRKVACIGAW PA V+F+VARAGQ GYHH+TE NKKIYK+G+ ++A T++
Sbjct: 387 LRKVACIGAWLPAHVAFSVARAGQKGYHHQTETNKKIYKIGQGYLIKDGKLTKNNASTDY 446
Query: 288 DRSVYLLSSLMG 299
D S ++ L G
Sbjct: 447 DLSDRSINPLGG 458
>RGD|1591334 [details] [associations]
symbol:Nme4 "NME/NM23 nucleoside diphosphate kinase 4"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0004550 "nucleoside
diphosphate kinase activity" evidence=IEA;ISO] [GO:0005509 "calcium
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006183 "GTP biosynthetic process"
evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA]
[GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IDA]
InterPro:IPR000597 InterPro:IPR001564 InterPro:IPR002048
InterPro:IPR002198 Pfam:PF00106 Pfam:PF00297 Pfam:PF00334
PRINTS:PR01243 PROSITE:PS50222 SMART:SM00562 InterPro:IPR016040
RGD:1308952 RGD:1591334 RGD:71002 GO:GO:0005739 GO:GO:0005524
GO:GO:0032403 Gene3D:3.40.50.720 GO:GO:0006412 GO:GO:0016491
GO:GO:0005840 GO:GO:0003735 GO:GO:0055114 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006183 GO:GO:0004550 GO:GO:0006241
GO:GO:0006228 Gene3D:3.30.70.141 SUPFAM:SSF54919 InterPro:IPR019926
PROSITE:PS00474 EMBL:AC126071 UniGene:Rn.17377 EMBL:AY383698
IPI:IPI00421361 HSSP:P15531 SMR:Q6TXF6 STRING:Q6TXF6
Ensembl:ENSRNOT00000027501 Genevestigator:Q6TXF6 Uniprot:Q6TXF6
Length = 867
Score = 348 (127.6 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 69/132 (52%), Positives = 94/132 (71%)
Query: 174 GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 233
G+VA+K+D+A P++ VF + EMID++G+TKGKGY+GV +RW + PRKTH+G
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYKGVTSRWHTKKPPRKTHQG 386
Query: 234 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEF 287
LRKVACIGAW PA V+F+VARAGQ GYHH+TE NKKIYK+G+ ++A T++
Sbjct: 387 LRKVACIGAWLPAHVAFSVARAGQKGYHHQTETNKKIYKIGQGYLIKDGKLTKNNASTDY 446
Query: 288 DRSVYLLSSLMG 299
D S ++ L G
Sbjct: 447 DLSDRSINPLGG 458
>UNIPROTKB|H3BQN3 [details] [associations]
symbol:RPL3L "60S ribosomal protein L3-like" species:9606
"Homo sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC005363
HGNC:HGNC:10351 Ensembl:ENST00000565426 Bgee:H3BQN3 Uniprot:H3BQN3
Length = 43
Score = 111 (44.1 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 53 MTHIVRDVEKPGSKLHKKETCEAVTIIETPPL 84
MTH +R+V +PG K+ K+E EAVTI+ETPPL
Sbjct: 1 MTHTLREVHRPGLKISKREEVEAVTIVETPPL 32
>TIGR_CMR|BA_0110 [details] [associations]
symbol:BA_0110 "ribosomal protein L3" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906
OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 RefSeq:NP_842678.1 RefSeq:YP_016715.1
RefSeq:YP_026396.1 ProteinModelPortal:Q81VT0 SMR:Q81VT0
PRIDE:Q81VT0 DNASU:1087637 EnsemblBacteria:EBBACT00000011145
EnsemblBacteria:EBBACT00000018294 EnsemblBacteria:EBBACT00000021192
GeneID:1087637 GeneID:2818190 GeneID:2852418 KEGG:ban:BA_0110
KEGG:bar:GBAA_0110 KEGG:bat:BAS0110 ProtClustDB:PRK00001
BioCyc:BANT260799:GJAJ-121-MONOMER
BioCyc:BANT261594:GJ7F-123-MONOMER HAMAP:MF_01325_B Uniprot:Q81VT0
Length = 210
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 138 ETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKV-DFAYGFFE--KQIPID 194
ETD G IQ E ++ T ++ H + +++ D E +++ +D
Sbjct: 42 ETD-GYNAIQLGFEDKREKLTNKPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVD 100
Query: 195 AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGAWHPARVSFTV 252
VF E++D+ G++KGKG++GV+ R G +R P +H R R+ +G P RV
Sbjct: 101 -VFATGEIVDVTGISKGKGFQGVIKRHGQSRGPM-SHGSRYHRRPGSMGPVAPNRVFKGK 158
Query: 253 ARAGQNGYHHRTEMNKKIYKL 273
AG+ G T N +I ++
Sbjct: 159 KLAGRMGGDQVTIQNLEIVQV 179
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 280 0.00082 115 3 11 22 0.48 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 612 (65 KB)
Total size of DFA: 214 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.97u 0.15s 22.12t Elapsed: 00:00:01
Total cpu time: 21.98u 0.15s 22.13t Elapsed: 00:00:01
Start: Sat May 11 02:52:48 2013 End: Sat May 11 02:52:49 2013