BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022045
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3
PE=2 SV=2
Length = 389
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/316 (79%), Positives = 281/316 (88%), Gaps = 16/316 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETPPLV+VG+V YVKTPRGLRSL +VWAQHL+EEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
NWCKSKKKAFTKY KY++D GKK+IQ QLEKMKKY +++R KKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
LMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
Query: 286 EFDRSVYLLSSLMGSF 301
EFDR+ ++ MG F
Sbjct: 301 EFDRTEKDITP-MGGF 315
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2
SV=4
Length = 390
Score = 526 bits (1355), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/316 (81%), Positives = 287/316 (90%), Gaps = 16/316 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETPP+VVVGVVGYVKTPRGLRSLCTVWAQHL+EE+RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
NW KSKKKAFT+Y+KK+ET++GKKDIQ+QLEKMKKYC+VIR KKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
L EIQ+NGG +A+KVD+A FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK QE+HSAMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300
Query: 286 EFDRSVYLLSSLMGSF 301
E+DR+ ++ MG F
Sbjct: 301 EYDRTEKDITP-MGGF 315
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2
SV=5
Length = 389
Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/316 (81%), Positives = 281/316 (88%), Gaps = 16/316 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETP +VVVGVV YVKTPRGLRSL TVWAQHL+EEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR---------------KKAH 165
NW KSKKKAFT Y K+Y+++DGKK IQAQLEKMKKY TVIR KKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK E+H+AMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMT 300
Query: 286 EFDRSVYLLSSLMGSF 301
E+DR+ ++ MG F
Sbjct: 301 EYDRTEKDVTP-MGGF 315
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2
Length = 403
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/319 (65%), Positives = 257/319 (80%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ +DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQES 280
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 301 NNASTDYDLSDKSINPLGG 319
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
Length = 403
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/319 (65%), Positives = 256/319 (80%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ D GKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQES 280
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 301 NNASTDYDLSDKSINPLGG 319
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1
SV=2
Length = 392
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 252/315 (80%), Gaps = 17/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSL FLPRKRA+RHRGKVK+FPKDDP KP LTA +GYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PG+K+HKKE EAVTIIETPPLV VGVVGY++TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK+ ++G I +LE++KKYCTV+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTPLKQKKAHL 179
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGGSVA KVDFA FEK I ID++F+KDEMID+I VTKG G++GV +RWG +L
Sbjct: 180 MEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKL 239
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT N K++++GK S E +A T+
Sbjct: 240 PRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEG-NASTD 298
Query: 287 FDRSVYLLSSLMGSF 301
FD S ++ MG F
Sbjct: 299 FDISKKQITP-MGGF 312
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3
Length = 403
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/319 (65%), Positives = 255/319 (79%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ D GKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQES 280
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 301 NNASTDYDLSDKSINPLGG 319
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2
Length = 403
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/319 (64%), Positives = 254/319 (79%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+V+VG+VGYV+TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME+QVNGG+VA+K+D+A E+Q+P+ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQES 280
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 301 NNASTDYDLSDKSINPLGG 319
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3
Length = 403
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/319 (65%), Positives = 255/319 (79%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE AVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ +DGKK ++ MKKYC VIR KKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQES 280
PRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T++D S ++ L G
Sbjct: 301 NNASTDYDLSDKSINPLGG 319
>sp|P59671|RL3_NEUCR 60S ribosomal protein L3 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-3
PE=3 SV=1
Length = 392
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/315 (64%), Positives = 249/315 (79%), Gaps = 17/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSL +LPRKRA+RHRGKVK+FPKDD KP LTA +GYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PG+K HKKE EAVTII+TPP++VVG+VGY++TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK+ ++G I +LE++KKYCTV+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYVKKHSDNNGAA-ITRELERIKKYCTVVRVLAHTQIRKTPLKQKKAHL 179
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGGSVA KV+F +G FEK + ID++F+KDE+ID+I VTKG G+ GV RWG +L
Sbjct: 180 MEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKL 239
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIY++GK E SA TE
Sbjct: 240 PRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAATE 298
Query: 287 FDRSVYLLSSLMGSF 301
D + ++ MG F
Sbjct: 299 VDVTKKKITP-MGGF 312
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2
Length = 402
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/290 (67%), Positives = 237/290 (81%), Gaps = 14/290 (4%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LTAF+ +KAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAVTI E PP+V+VG+VGY+ TPRG R TVWA+HL+E+ R RFYK
Sbjct: 61 DKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW SKKKAF K+ KK++ +DG+K I+A L KMKKYC+ IR KKAH+
Sbjct: 121 NWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAHI 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGG+VA+KVD+A EKQ+P+D+VF +DEMID IGVTKGKG++GV +RW +L
Sbjct: 181 MEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 276
PRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY+LGK+
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKS 290
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3
SV=2
Length = 401
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/318 (61%), Positives = 247/318 (77%), Gaps = 18/318 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAV+IIETPP+V+ GV GY+ TP+G R+L T+WA+HL+EE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ +DGKK I+A K+KKYC+ IR KKAHL
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
+EIQ+NGG++ QKVD+A EKQI +D VF +DEMID IGVTKG G++GV +RW +L
Sbjct: 181 VEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSA 283
PRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++ + ++
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNG 300
Query: 284 MTEFDRSVYLLSSLMGSF 301
TEFD + ++ MG F
Sbjct: 301 STEFDLTQKTINP-MGGF 317
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=2
SV=1
Length = 401
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/318 (61%), Positives = 247/318 (77%), Gaps = 18/318 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAVTI+ETPP+V+ GV GYV TP+G R+L T+WA+HL+EE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KK++ +DGKK I+A K+KKYC+ IR KKAHL
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
+EIQVNGG++ QKVD+A EKQ+ +D VF +DEMID IGVT+G G++GV +RW +L
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSA 283
PRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++ + ++
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNG 300
Query: 284 MTEFDRSVYLLSSLMGSF 301
TEFD + ++ MG F
Sbjct: 301 STEFDLTQKTITP-MGGF 317
>sp|P34113|RL3_DICDI 60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1
SV=2
Length = 398
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 250/321 (77%), Gaps = 20/321 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHG+LGF PRKRA+RH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+
Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSK+HKKE EAVTIIE PP+ +VG+VGYV+T +GL++ TVWAQHL++ RRR YK
Sbjct: 61 EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYK 120
Query: 121 NWCKSK-KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAH 165
NW KSK KKAFTKY K+YET++GKK I+A L+ +KK C+V+R KKAH
Sbjct: 121 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAH 180
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
++EIQVNGGS+ +KV+FA FEK + + VF ++E+ID+IGVTKGKG+ GV+ RWGV +
Sbjct: 181 VLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRK 240
Query: 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----H 281
LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A E
Sbjct: 241 LPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQIS 300
Query: 282 SAMTEFDRSVYLLSSLMGSFS 302
+ TEFD + ++ MG F+
Sbjct: 301 TGKTEFDLTEKTINP-MGGFA 320
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3b PE=3 SV=2
Length = 388
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/315 (67%), Positives = 250/315 (79%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVTIIETPP+VVVGVVGYV+TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KKY + + I +LE++KKYC+V+R KKAHL
Sbjct: 121 NWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG RL
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T+
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTD 297
Query: 287 FDRSVYLLSSLMGSF 301
FD + ++ MG F
Sbjct: 298 FDATEKRITP-MGGF 311
>sp|P40372|RL3A_SCHPO 60S ribosomal protein L3-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3a PE=1 SV=2
Length = 388
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/315 (66%), Positives = 250/315 (79%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVT+IETPP+VVVGVVGYV+TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY KKY + + I +LE++KKYC+V+R KKAHL
Sbjct: 121 NWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG RL
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T+
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTD 297
Query: 287 FDRSVYLLSSLMGSF 301
FD + ++ MG F
Sbjct: 298 FDATEKRITP-MGGF 311
>sp|Q759R7|RL3_ASHGO 60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL3 PE=3 SV=2
Length = 387
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/315 (63%), Positives = 250/315 (79%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ RG+VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAV++++TPP+VVVGVVGY++TPRGLRSL TVWA+HL++E++RRFYK
Sbjct: 61 DRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY+ KY D I+ +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGAA--IERELARIKKYASVVRVLAHTQVRKTPLVQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGSV++KVD+A FEK + +D+VF+++EMID+I VTKG G+EGV RWG +L
Sbjct: 179 AEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N K+Y++GK E ++A TE
Sbjct: 239 PRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TE 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTITP-MGGF 311
>sp|Q6BXM5|RL3_DEBHA 60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL3 PE=3 SV=1
Length = 389
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/315 (64%), Positives = 248/315 (78%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSLGFLPRKR++ RG+VK+FPKD SKP LTAFLGYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EA T+++TPPLVVVGVVGYV+TPRGLRSL TVWA+HL+EEVRRRFYK
Sbjct: 61 DRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY+ KY D + ++ +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQVNGGSV+ KVD+A FEK + +D+VF+KDEM+D+ VTKG G+EGV RWG +L
Sbjct: 179 AEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N K+Y++G A ES S TE
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGATE 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTINP-MGGF 311
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=2
SV=3
Length = 416
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/321 (61%), Positives = 240/321 (74%), Gaps = 21/321 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGS+ F P+KR++RHRGKVKAFPKDD SKP LT F+GYKAGMTHIVR+
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVT++ETPP++VVG VGY++TP GLR+L VWAQHL+EE RRRFYK
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTK +KK+ D GKK I+ KM +YC VIR KKAH+
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGGS+ KV +A EK I + VF +DEMID +GVTKGKG++GV +RW +L
Sbjct: 181 MEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE------S 280
PRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIK 300
Query: 281 HSAMTEFDRSVYLLSSLMGSF 301
++A TE+D + ++ MG F
Sbjct: 301 NNASTEYDLTDKSITP-MGGF 320
>sp|Q6CJR7|RL3_KLULA 60S ribosomal protein L3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL3 PE=3 SV=1
Length = 387
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/315 (62%), Positives = 249/315 (79%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ RG+VK+FPKDD +KP LT+FLGYKAGM+ IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+VVVGVVGYV+TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY+ KY + + D +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSAKYAENGAQVD--RELARIKKYASVVRVLVHTQVRKTPLSQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGSV+ KVD+A FEK + +D+VF+++EMID++ VTKG G+EGV RWG +L
Sbjct: 179 AEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GK E+++A TE
Sbjct: 239 PRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TE 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTITP-MGGF 311
>sp|Q6FTJ2|RL3_CANGA 60S ribosomal protein L3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL3 PE=3
SV=1
Length = 387
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/315 (63%), Positives = 248/315 (78%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ RG+VK+FPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+VVVGVVGYV+TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY+ KY + +I+ +L ++KKY TV+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSAKYAQNGA--EIERELARIKKYATVVRVLVHTQVRKTPLVQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGS+++KVD+A FEK + +D+VF+++EMID I VTKG G+EGV RWG +L
Sbjct: 179 AEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KIY++GK E ++A T
Sbjct: 239 PRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TN 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTINP-MGGF 311
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3
Length = 407
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/319 (59%), Positives = 238/319 (74%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPLVVVGVVGYV TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
+W KSKKKAFTK K++ DGKK +Q MKKYC VIR KKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
MEIQ+NGG+VA+KV +A EKQ+P+ +VF + E+ID+I VTKG+G +GV +RW +L
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------ 280
PRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKI+++G+
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T +D + ++ L G
Sbjct: 301 NNASTSYDVTAKSITPLGG 319
>sp|Q3SZ10|RL3L_BOVIN 60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3
Length = 407
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/319 (59%), Positives = 239/319 (74%), Gaps = 20/319 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPLVVVGVVGYV TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
+W KSKKKAFTK K++ DGKK +Q MKKYC VIR KKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME+Q+NGG+VA+KV +A EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW +L
Sbjct: 181 MEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKL 240
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------ 280
PRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKIY++G+
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVK 300
Query: 281 HSAMTEFDRSVYLLSSLMG 299
++A T +D + ++ L G
Sbjct: 301 NNASTSYDVTDKSITPLGG 319
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL3 PE=1 SV=4
Length = 387
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/315 (62%), Positives = 245/315 (77%), Gaps = 18/315 (5%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ R +VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+VVVGVVGYV+TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW KSKKKAFTKY+ KY D I+ +L ++KKY +V+R KKAHL
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHL 178
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQ+NGGS+++KVD+A FEK + +D+VF+++EMID I VTKG G+EGV RWG +L
Sbjct: 179 AEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK E++ A T
Sbjct: 239 PRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-TS 297
Query: 287 FDRSVYLLSSLMGSF 301
FDR+ ++ MG F
Sbjct: 298 FDRTKKTITP-MGGF 311
>sp|O96774|RL3_TETTH Ribosomal protein L3 OS=Tetrahymena thermophila GN=RPL3 PE=1 SV=1
Length = 391
Score = 341 bits (875), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 172/313 (54%), Positives = 229/313 (73%), Gaps = 19/313 (6%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHGSLGF PR+R HRG+ ++FPKDDPSK LTAF G+KAGMTHI+R+V
Sbjct: 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++ GS+ +KKE EAVT+IE PP+ +VGVVGY+ TPRGLR+L TVWA+ ++ ++RFYK
Sbjct: 61 DRSGSRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIR--------------KKAHL 166
NW S KKAFT + K + D +D+ L++++KYC+V+R KK H+
Sbjct: 121 NWANSNKKAFTHHEKNF--DQKAQDL--LLKRIEKYCSVVRVIAHTNMSKLNLRQKKNHI 176
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
+EIQVNGG VA+KV FA EK++ +D++F ++EM+D++GVTKGKG+ GV+ R+GV L
Sbjct: 177 LEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKHL 236
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
+KTHRG RKV CIGAWHP+R+ FTV RAGQ GYHHRTE NKK+Y++GK S +A T
Sbjct: 237 QKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKGDDAS-NASTA 295
Query: 287 FDRSVYLLSSLMG 299
D + ++ L G
Sbjct: 296 GDVTDKAITPLGG 308
>sp|Q8SQI3|RL3_ENCCU 60S ribosomal protein L3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPL3-1 PE=1 SV=1
Length = 383
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/315 (46%), Positives = 202/315 (64%), Gaps = 24/315 (7%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRD- 59
MS RKF PRHGSL F PRKR+ R AFP DD S+P LT F+ YKAGMTH+VR
Sbjct: 1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTK 60
Query: 60 VEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFY 119
+ +K +E +AVT++E PP+VV G+VGY KT GLR L V A ++++ V RR +
Sbjct: 61 TQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMF 120
Query: 120 KNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYC---------TVIR----KKAHL 166
N SK+ A ++ K + + ++ K + +C T+I+ KKAH+
Sbjct: 121 GNRYASKESA-GQFCKGSVCES-----RVEMIKERAHCVRVLVQTQPTLIKGLGLKKAHI 174
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
EIQVNGGS+++KV++A G EK+I I VF +E ID IGVTKGKG++G V R+GV +
Sbjct: 175 AEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQ 234
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 286
PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK++Y +G S + TE
Sbjct: 235 PRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSS---NIKTE 291
Query: 287 FDRSVYLLSSLMGSF 301
FD + +S MG F
Sbjct: 292 FDLTEKPISP-MGGF 305
>sp|A6UQJ0|RL3_METVS 50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1
Length = 334
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 153/277 (55%), Gaps = 9/277 (3%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ ++E+ R+
Sbjct: 61 SPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL----TV 116
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAY 184
+KK+ + D++ + K + +KK ++EI+V G SVA+K+ +A
Sbjct: 117 TKKEEIKTVESLDAVLEKTVDLRVIVHTNPKTTGIPKKKPEVVEIRVGGSSVAEKLAYAK 176
Query: 185 GFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGA 242
K + I+ VF+ E ID + VTKGKG++G V RWGV + + +G+ R+ IG
Sbjct: 177 DILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGP 236
Query: 243 WHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
W P RV +TV AGQ G+H RTE NK+I KLG E
Sbjct: 237 WRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|Q9UWG2|RL3_METVA 50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3
SV=1
Length = 334
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 153/277 (55%), Gaps = 9/277 (3%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ ++E+ R+
Sbjct: 61 SPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL----TV 116
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAY 184
+KK+ + D++ + K + +KK ++EI+V G SVA+K+ +A
Sbjct: 117 TKKEEIKTVESLDAVLEKTVDLRVIVHTNPKTTGIPKKKPEVVEIRVGGSSVAEKLAYAK 176
Query: 185 GFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGA 242
K + I+ VF+ E ID + VTKGKG++G V RWGV + + +G+ R+ IG
Sbjct: 177 DILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGP 236
Query: 243 WHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
W P RV +TV AGQ G+H RTE NK+I KLG E
Sbjct: 237 WRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|P54014|RL3_METJA 50S ribosomal protein L3P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl3p PE=3 SV=1
Length = 335
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 154/278 (55%), Gaps = 12/278 (4%)
Query: 6 FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGS 65
PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKS 61
Query: 66 KLHKKETCEAVTIIETPPLVVVGVVGYVKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCK 124
+E +TI+E PP+ V + Y + R L +L VWA +L++E+ R+ K
Sbjct: 62 PNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----K 116
Query: 125 SKKKAFTKYTKKYET-DDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFA 183
KK K + E D +D++ + K + +KK ++EI++ G + +++++A
Sbjct: 117 LPKKEDRKTVEDLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYA 176
Query: 184 YGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIG 241
KQ+ I VFQ+ E++D IGVTKGKG++G V RWGV + + +G+ R V IG
Sbjct: 177 KEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIG 236
Query: 242 AWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
W P V ++V GQ GYH RTE NK+I K+G E
Sbjct: 237 PWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE 274
>sp|C5A286|RL3_THEGJ 50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1
Length = 346
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 147/276 (53%), Gaps = 10/276 (3%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG
Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRR---FYKN 121
KE VTI+E PPL V G+ Y + GL + VW LN+ V+RR KN
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKN 118
Query: 122 WCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVD 181
+ + KA + D D++ L + + ++KK +ME + G V K +
Sbjct: 119 YGEEDFKAKLGQLEDLVNDGEIVDVRL-LVHTQPWLIKLKKKPEVMEYAIGGDDVKAKFE 177
Query: 182 FAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVAC 239
+A K+I V + E++D+I VTKGKG +G V RWGV K R R +
Sbjct: 178 YAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGN 237
Query: 240 IGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
+G WHPARV +TV +AGQ G+HHRTE NK++ +G+
Sbjct: 238 LGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273
>sp|A5UL89|RL3_METS3 50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1
Length = 336
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 151/274 (55%), Gaps = 10/274 (3%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSK 66
PR GS+ F PRKRA++ ++K++P++D K L GYK GMTH +V D +K S
Sbjct: 6 QPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSP 61
Query: 67 LHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSK 126
+ + VT++E PP+VV+G+ Y KT RGL+ + V A +L+EE+ R+ +K
Sbjct: 62 TNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKISLPKEYNK 121
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGF 186
+A K D +DI+ + K +V +KK + E + G + +K++ A
Sbjct: 122 SEAIAKIQGVL---DKTEDIKVLVHTNPKVTSVPKKKPDIFECGIGGANPEEKLNTALEL 178
Query: 187 FEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWH 244
++ + + + +D I TKGKG++GVV RWG+ K R R V IG W
Sbjct: 179 LGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGIRIQYGKAVRAGKGRHVGSIGPWT 238
Query: 245 PARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 278
P+R +TVA+AGQ GYH RTE NKKI K+ A +
Sbjct: 239 PSRTMWTVAQAGQMGYHKRTEFNKKILKIASADE 272
>sp|O28354|RL3_ARCFU 50S ribosomal protein L3P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl3p PE=3 SV=1
Length = 331
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 155/278 (55%), Gaps = 12/278 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++
Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKN 58
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT+IETPP+ V V Y KT G++ VW+ +L++ + RR
Sbjct: 59 SPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-----N 113
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKA-HLMEIQVNGGSVAQKVDFA 183
KK K ++G +++ T + KK +ME ++ GG+V + +D+A
Sbjct: 114 LPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYA 172
Query: 184 YGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIG 241
K+I + VF + +ID+I VTKGKG++G V RWGV L K R R+V +G
Sbjct: 173 ISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLG 232
Query: 242 AWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
W+P V +TV +AGQ G+H RTE NK++ K+G+ +E
Sbjct: 233 PWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE 270
>sp|Q6LX10|RL3_METMP 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl3p PE=3 SV=1
Length = 334
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 151/277 (54%), Gaps = 9/277 (3%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+ K
Sbjct: 61 SPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKLTLA-KK 119
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAY 184
+KK E +++A + K + +KK ++EI++ G SVA+++ +A
Sbjct: 120 EEKKTVDALDAVLEKAT---EVRAIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAYAK 176
Query: 185 GFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGA 242
K + I VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG
Sbjct: 177 EILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGP 236
Query: 243 WHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 237 WRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|Q9YFM2|RL3_AERPE 50S ribosomal protein L3P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl3p PE=3
SV=1
Length = 344
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 155/279 (55%), Gaps = 12/279 (4%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
M RK PR GSLGF PRKRASR +VK +P+ D KP L AFLGY+AGMTH+
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTP-RGLRSLCTVWAQHLNE-EVRRRF 118
++PG KE VTI+ETPP+ V V Y P RG SL WAQ E E++RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI 119
Query: 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGS-VA 177
K ++ + + + I A K+ + +KK L+EI+V G S V
Sbjct: 120 STLGSFDTDKMLKSLEERLDKAEDVRLIAASQPKLAGGLS--KKKPDLLEIKVGGVSDVT 177
Query: 178 QKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 235
+ D+A I ++ VF++ +++D+I VTKGKG++GV+ RWGV LPR K +G R
Sbjct: 178 KLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSR 237
Query: 236 KVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKIYKL 273
+ IGA R +F +AGQ G+H RTE NK+I +
Sbjct: 238 R---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMI 273
>sp|Q3IMY8|RL3_NATPD 50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl3p PE=3 SV=1
Length = 336
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 149/272 (54%), Gaps = 11/272 (4%)
Query: 9 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLH 68
PR GS+GF PR RA+ + ++P DD +P L F GYKAGM+H+V ++P S
Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQPG-LQGFAGYKAGMSHVVAINDEPNSPRE 64
Query: 69 KKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKK 128
+E VT++ETPP+ V V Y TP G R L VW ++E++ R ++
Sbjct: 65 GQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSLS---VPEEQS 121
Query: 129 AFTKYTKKYETDDGK-KDIQAQLEKMK-KYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGF 186
+ + D+G D++ + +V +K+ +ME +V GGS++ +VDFA
Sbjct: 122 GDIEGDIRTALDEGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDL 181
Query: 187 FEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGA 242
+ + + VF+ E D+ G+TKGKG +G V RWGV + K R R++ +G
Sbjct: 182 VDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP 241
Query: 243 WHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 274
W+P+RV TV + GQ GYH RTE+NK++ LG
Sbjct: 242 WNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG 273
>sp|P20279|RL3_HALMA 50S ribosomal protein L3P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl3p PE=1
SV=5
Length = 338
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 148/277 (53%), Gaps = 8/277 (2%)
Query: 9 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLH 68
PR GSLGF PRKR++ + ++P DD +P + F GYKAGMTH+V ++P S
Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDD-GQPG-VQGFAGYKAGMTHVVLVNDEPNSPRE 64
Query: 69 KKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKK 128
E VT+IETPP+ V + Y TP G R L VW + E+ R
Sbjct: 65 GMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDA 124
Query: 129 AFTKYTKKYETDDGKKDIQAQLEKMKKYC-TVIRKKAHLMEIQVNGGSVAQKVDFAYGFF 187
A + +E D D++ + +V +KK +ME +V GGSV+ ++D A
Sbjct: 125 AEEQIRDAHEAGD-LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIV 183
Query: 188 EK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAW 243
E + ++ +F+ E D+ GVTKGKG +G V RWGV + K R R++ +G W
Sbjct: 184 EDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPW 243
Query: 244 HPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES 280
+P+RV TV + GQ GYH RTE+NK++ +G+ + +
Sbjct: 244 NPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPT 280
>sp|B6YSL3|RL3_THEON 50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1)
GN=rpl3p PE=3 SV=1
Length = 347
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 8/275 (2%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL + PRKRA +++ +PKD R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
KE VT++E PPL V G+ Y + GL + VW LN+ V+RR
Sbjct: 60 LT-KGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRIKTLPKD 118
Query: 125 SKKKAFTKYTKKYE--TDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDF 182
++AF + E +DG+ L + + ++KK +ME + G V K D+
Sbjct: 119 YNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIKLKKKPEVMEYAIGGDDVKAKFDY 178
Query: 183 AYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACI 240
A K++ V + E++D+I VTKGKG +G V RWG+ K R R V +
Sbjct: 179 AKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNL 238
Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
G WHP RV +TV +AGQ G+HHRTE NK++ +G+
Sbjct: 239 GPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273
>sp|Q9V1T5|RL3_PYRAB 50S ribosomal protein L3P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl3p PE=3 SV=1
Length = 361
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 159/292 (54%), Gaps = 27/292 (9%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWA------QHLNEEVRRRF 118
+ KE VTIIETPPL V G+ Y + GL + V +++++ + R
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
Query: 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKK---------------YCTVIRKK 163
+ + K++ T K Y DD ++ + LE M K + ++KK
Sbjct: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
Query: 164 AHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 223
+ME + G SV +K ++ K++ + V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
Query: 224 TRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+
Sbjct: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 288
>sp|A4FVY2|RL3_METM5 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl3p PE=3 SV=1
Length = 334
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 152/279 (54%), Gaps = 13/279 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFY--KNW 122
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+ K
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKLTLAKKE 120
Query: 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDF 182
K A +K +++A + K + +KK ++EI++ G SVA+++ +
Sbjct: 121 EKKTADALDAVVEKAT------EVRAIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAY 174
Query: 183 AYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACI 240
A K + I VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R I
Sbjct: 175 AKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSI 234
Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
G W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 235 GPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|Q5JDJ0|RL3_PYRKO 50S ribosomal protein L3P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl3p PE=3 SV=1
Length = 346
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 146/275 (53%), Gaps = 8/275 (2%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL + PRKRA +++++PKD R+ F GYKAGMTHI+ + PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
KE VTI+E PPL V G+ Y + GL + VW L++ V RR
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKN 118
Query: 125 SKKKAFTKYTKKYE--TDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDF 182
++AF + E +DG+ L + + ++KK +ME + G V K D+
Sbjct: 119 YNEEAFQAKLGQLEDLVNDGEIADVRLLVHTQPWLIGLKKKPEVMEYAIGGDDVKAKFDY 178
Query: 183 AYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACI 240
A K++ V + E++D+I VTKGKG +G V RWGV K R R + +
Sbjct: 179 AKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNL 238
Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
G WHPARV +TV +AGQ G+HHRTE NK++ +G+
Sbjct: 239 GPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273
>sp|A9A9B8|RL3_METM6 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl3p PE=3 SV=1
Length = 334
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 152/279 (54%), Gaps = 13/279 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRF--YKNW 122
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+ K
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKLTLVKKE 120
Query: 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDF 182
K A +K +++A + K + +KK ++EI++ G SVA+++ +
Sbjct: 121 EKKTADALDAVLEKAT------EVRAIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAY 174
Query: 183 AYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACI 240
A K + I VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R I
Sbjct: 175 AKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSI 234
Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
G W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 235 GPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|A6VHD2|RL3_METM7 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl3p PE=3 SV=1
Length = 334
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 151/279 (54%), Gaps = 13/279 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRF--YKNW 122
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+ K
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKLTLVKKE 120
Query: 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDF 182
K A +K +++ + K + +KK ++EI++ G SVA+++ +
Sbjct: 121 EKKTADALDAVLEKAT------EVRVIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAY 174
Query: 183 AYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACI 240
A K + I VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R I
Sbjct: 175 AKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSI 234
Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
G W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 235 GPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|A1RVG3|RL3_PYRIL 50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl3p PE=3 SV=1
Length = 342
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 149/281 (53%), Gaps = 12/281 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GS+G PRKRA+ +V+ +P+ + KP L F YKAGM H V ++P
Sbjct: 8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPT 66
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRG--LRSLCTVWAQHLNEEVRRRFYKNW 122
S L+ KE +AVT+++ PPL + G Y P RS+ VWA L +RR
Sbjct: 67 SPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL---- 122
Query: 123 CKSKKKAFTKYTKKYET-DDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNG-GSVAQKV 180
+K K KK E D D++A + + +K L+EI + G SV +++
Sbjct: 123 TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQPHLSGIGKKTPELLEIPIGGVPSVDERI 182
Query: 181 DFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVA 238
FA K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+
Sbjct: 183 KFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTG 242
Query: 239 CIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
IG PA V FT R GQ G+H RTE NK+I K+G E
Sbjct: 243 TIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE 282
>sp|C6A159|RL3_THESM 50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl3p PE=3 SV=1
Length = 359
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 156/289 (53%), Gaps = 23/289 (7%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
+ PR GSL + PRKRA +++ +P++ + R+ F GYKAGMTH++ + PG
Sbjct: 3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG 59
Query: 65 SKLHK-KETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHL---NEEVRR---- 116
L K KE VTI+E PPL+V G+ Y + GL + V N +R
Sbjct: 60 --LTKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNV 117
Query: 117 RFYKNWCKSKKKAFTKYTKKY------ETDDGKKDIQA----QLEKMKKYCTVIRKKAHL 166
FYK + K YT++ E +D K + L + + I+KK +
Sbjct: 118 TFYKLLERRIKTLPKNYTEEVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEV 177
Query: 167 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226
ME V G S+ +K ++ K+I + + Q+ E++DI+ VTKGKG +G V RWGV
Sbjct: 178 MEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLT 237
Query: 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
K +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+
Sbjct: 238 SHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGE 286
>sp|O59418|RL3_PYRHO 50S ribosomal protein L3P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl3p PE=3 SV=1
Length = 362
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 155/299 (51%), Gaps = 40/299 (13%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
+ KE VTIIETPPL V G+ Y + GL + V N+
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFE-------LDNYTP 111
Query: 125 SKKKAFTKYT-------------KKYETDDGKKDIQAQLEKMKKYCTVI----------- 160
SKK K+T K Y ++ ++ + A LE M K ++
Sbjct: 112 SKKGKGRKFTFYQFLGRRIATLPKDYTQEEFEQKLGA-LEDMIKEGEIVEVRALVSTQPW 170
Query: 161 ----RKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEG 216
+KK +ME + G SV +K ++ K+I + V ++ E++D+I VTKGKG +G
Sbjct: 171 VIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQG 230
Query: 217 VVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275
V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+
Sbjct: 231 PVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 289
>sp|Q2NFV6|RL3_METST 50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl3p PE=3 SV=1
Length = 337
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 146/274 (53%), Gaps = 9/274 (3%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKL 67
PR GS+ F PRKR +R +V +P+ D + L AF GYK GMTH+ + GS
Sbjct: 6 QPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPT 62
Query: 68 HKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQ-HLNEEVRRRFYKNWCKSK 126
E VTI+E PPLVV+G+ Y KT GL++L V A +L++E+ R+
Sbjct: 63 ENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKISVPKFDDI 122
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGF 186
+ + K + D +I+ + K +V +KK ++E + G SV K+++A
Sbjct: 123 EAKIEELRNKIDDID---EIRVLIHTKPKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISI 179
Query: 187 FEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWH 244
K+I VFQ+ E D I TKGKG +G V R+GV + + G+ R V IG W
Sbjct: 180 LGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWT 239
Query: 245 PARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 278
P R +TVA GQ GYH RTE NKK+ K+G S+
Sbjct: 240 PNRTMWTVAMQGQMGYHKRTEYNKKLLKIGDESE 273
>sp|Q8TZZ8|RL3_PYRFU 50S ribosomal protein L3P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl3p PE=1 SV=1
Length = 365
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 158/312 (50%), Gaps = 38/312 (12%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSLGF PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHL---NEEVRRR---- 117
+ KE VTIIETPPL V G+ Y GL + V N + R
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP 118
Query: 118 -----FYKNWCKSKKKAFTKYTKK-YETDDGKKDIQAQLEKMKK---------------Y 156
FYK + YT++ +E G QLE M K +
Sbjct: 119 KPKMTFYKLLERRIATLPKNYTQEMFEQKLG------QLEDMIKEGEIVDVRAIVATQPW 172
Query: 157 CTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEG 216
++KK +ME + G SV +K ++ K++ + V ++ E++D+I VTKGKG +G
Sbjct: 173 VIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQG 232
Query: 217 VVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 276
V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+
Sbjct: 233 PVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGEN 292
Query: 277 SQESHSAMTEFD 288
+ TE +
Sbjct: 293 GKLKLDENTEIE 304
>sp|B1YD88|RL3_PYRNV 50S ribosomal protein L3P OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1
Length = 338
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 12/281 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GS+G PRKRA+ +V+ +P+ + KP L F YKAGM H V ++P
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPT 62
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRG--LRSLCTVWAQHLNEEVRRRFYKNW 122
S L+ KE VT+++ PPL + G Y P RS+ VWA L +RR
Sbjct: 63 SPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL---- 118
Query: 123 CKSKKKAFTKYTKKYET-DDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNG-GSVAQKV 180
+K K KK E D D++A + + +K L+EI + G SV +++
Sbjct: 119 TLPEKADVDKQMKKVEEFKDVAVDVRALVATQPHLSGIGKKTPELLEIPIGGVPSVDERI 178
Query: 181 DFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVA 238
FA K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+
Sbjct: 179 KFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTG 238
Query: 239 CIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
IG PA + FT R GQ G+H RTE NK++ K+G E
Sbjct: 239 TIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE 278
>sp|O26110|RL3_METTH 50S ribosomal protein L3P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl3p PE=3 SV=1
Length = 337
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 147/274 (53%), Gaps = 9/274 (3%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSK 66
PR GS+ F PRKRA+R +VK++P+ D+P L A GYKAGMTH++ + S
Sbjct: 6 QPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSP 61
Query: 67 LHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSK 126
E VTI+E PPL V+ V Y KT RGL++L V A +++RR+
Sbjct: 62 TEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKLTPPADDYD 121
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGF 186
++A + K + D++ + + +V +KK + E + G + +K ++A
Sbjct: 122 QEAAIE--KIRSNMEYVADVRVIVHTNPRLASVPKKKPEVFECGLGGKTPEEKFEYALEI 179
Query: 187 FEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWH 244
K + +F + +D I VTKGKG++G V RWG+ K R R + +G W
Sbjct: 180 LGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWT 239
Query: 245 PARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 278
P+R +TV +AGQ GYH RTE NK+I K+G AS+
Sbjct: 240 PSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASE 273
>sp|Q8ZW52|RL3_PYRAE 50S ribosomal protein L3P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl3p PE=3 SV=1
Length = 338
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 151/281 (53%), Gaps = 12/281 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GS+G PRKRA+ +V+ +P+ + KP L F YKAGM H V ++P
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRG--LRSLCTVWAQHLNEEVRRRFYKNW 122
S L+ KE +AVT+++ PPL V G Y P R++ VWA L + + R
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL---- 118
Query: 123 CKSKKKAFTKYTKKYET-DDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNG-GSVAQKV 180
+K K KK E D D++A + + +K L+EI + G SV +++
Sbjct: 119 TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQPHLSGIGKKTPELLEIPIGGVPSVDERI 178
Query: 181 DFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVA 238
+FA K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+
Sbjct: 179 NFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTG 238
Query: 239 CIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 279
IG PA V FT R GQ G+H RTE NK++ K+G+ E
Sbjct: 239 TIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,225,768
Number of Sequences: 539616
Number of extensions: 4962135
Number of successful extensions: 13832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 13026
Number of HSP's gapped (non-prelim): 695
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)