Query 022045
Match_columns 303
No_of_seqs 155 out of 1104
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_B 60S ribosomal protein L 100.0 3E-104 9E-109 761.0 26.6 299 1-303 1-313 (387)
2 3iz5_C 60S ribosomal protein L 100.0 5E-104 2E-108 759.7 23.4 302 1-303 1-317 (389)
3 4a17_B RPL3, ribosomal protein 100.0 1E-103 4E-108 757.0 24.2 297 1-303 1-311 (391)
4 2zkr_b 60S ribosomal protein L 100.0 3E-101 9E-106 745.9 17.4 302 1-303 1-322 (403)
5 3j21_C 50S ribosomal protein L 100.0 2.5E-93 8.5E-98 680.8 22.4 278 1-303 1-313 (365)
6 1vq8_B 50S ribosomal protein L 100.0 6E-90 2.1E-94 657.8 22.2 260 4-303 2-287 (338)
7 2ftc_C L3MT, MRP-L3, mitochond 100.0 4.2E-66 1.4E-70 464.9 18.2 177 43-276 1-184 (211)
8 3r8s_D 50S ribosomal protein L 100.0 6E-66 2E-70 462.7 16.3 177 43-276 1-183 (209)
9 3v2d_E 50S ribosomal protein L 100.0 4.1E-64 1.4E-68 449.9 15.9 172 43-276 1-178 (206)
10 2zjr_B 50S ribosomal protein L 100.0 4E-63 1.4E-67 446.6 15.9 173 44-276 2-178 (211)
11 3bbo_F Ribosomal protein L3; l 100.0 7E-65 2.4E-69 469.3 3.9 181 42-276 42-226 (259)
No 1
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=2.6e-104 Score=760.95 Aligned_cols=299 Identities=66% Similarity=1.135 Sum_probs=280.8
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (303)
Q Consensus 1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle 80 (303)
|||||||+||||||||+|||||++|.|+|++||+||+++||+++||+|||+|||||+.++|+|+|+++|+++++||||||
T Consensus 1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivE 80 (387)
T 3u5e_B 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVD 80 (387)
T ss_dssp -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhhhcccc
Q 022045 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (303)
Q Consensus 81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v 160 (303)
+||++|++++||.+|+.|+.++.++|++||++||.|+||||||.+...+|..+.+++.+.+ +..+.+++.+++++..|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~--~~~~~~~~~~~k~~~vi 158 (387)
T 3u5e_B 81 TPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDG--AGIERELARIKKYASVV 158 (387)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTTTTTGGGGSSSS--HHHHHHHHHHHHSCSEE
T ss_pred cCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhhhhhcccccchh--HHHHHHHHHhhhcccEE
Confidence 9999999999999999999999999999999999999999999999999988877653211 34556677777765533
Q ss_pred c--------------CCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeEEEEeeccccccceEeeccCCC
Q 022045 161 R--------------KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226 (303)
Q Consensus 161 ~--------------~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~g~ 226 (303)
+ +|+||+|++|+|+++++++|||...+|++|+++|+|++||+|||+|+|||||||||||||||+++
T Consensus 159 Rvi~hTqp~l~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~ 238 (387)
T 3u5e_B 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238 (387)
T ss_dssp EEEEECCGGGSSCSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCCC
T ss_pred EEEEeccccccCccccCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEEEEEEEEcCccceeeeeecccCCC
Confidence 3 78999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCCCCCCCC
Q 022045 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS 303 (303)
Q Consensus 227 p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p~ggf~~ 303 (303)
|++||+.||++||||+|+|+|||+|++||||||||+||++||+|++||++ .+.+||+|||||++++|| |+|||+|
T Consensus 239 p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~~~~~~~t~~d~t~k~It-P~GGF~h 313 (387)
T 3u5e_B 239 PRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG-DDEANGATSFDRTKKTIT-PMGGFVH 313 (387)
T ss_dssp CTTCTTCSSSCSCCCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEECCS-SCSCSSCCTTTCCCCCSC-CTTCBTT
T ss_pred CccccCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCC-cccccccccccccccccc-CCCCccc
Confidence 99999999999999999999999999999999999999999999999998 556899999999999999 9999997
No 2
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=4.6e-104 Score=759.67 Aligned_cols=302 Identities=83% Similarity=1.356 Sum_probs=279.8
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (303)
Q Consensus 1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle 80 (303)
|||||||+||||||||+|||||++|.|+|++||+||+++||+++||+|||+|||||+.++|+|+|+++|+++++||||||
T Consensus 1 MshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (389)
T 3iz5_C 1 MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE 80 (389)
T ss_dssp CCSCSSCCCCSSCSTTCCCCCCSSSSCCCSCCCCSCSSCTTCBSEEEEEEEEEEEEEECCCCCSSSSCSSCEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCcEeeeeeEEEe
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhhhcccc
Q 022045 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (303)
Q Consensus 81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v 160 (303)
+||++|++++||.+|+.|+.++.++|++||++||.|+||||||.+...+|..+.+++...+.++..+.+++.+++++..|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~g~~~~~~~~~~~~k~~~vi 160 (389)
T 3iz5_C 81 TPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIV 160 (389)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTTTTTCSCCCSSCSCCCCCCSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcchhhhhhhhhhhhccccccchhhhHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999888766432111233445677776655422
Q ss_pred c---------------CCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeEEEEeeccccccceEeeccCC
Q 022045 161 R---------------KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225 (303)
Q Consensus 161 ~---------------~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~g 225 (303)
+ +|+||+|++|+|+++++++|||...+|++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus 161 Rvi~hTqp~l~~~l~qKK~~imEiqVnGgsv~~k~d~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 240 (389)
T 3iz5_C 161 RVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTR 240 (389)
T ss_dssp EEEEEECGGGCSSSCCCCCEEEEEEBCCSCHHHHHHHHHHHHTSCBCGGGTCCTTCEEEEEEECCEEEEECHHHHHCCCC
T ss_pred EEEEecccccccCCccCCceEEEEEecCCCHHHHHHHHHhcCCCEEehhhccCCCCEEEEEEEecCcccccceeecccCC
Confidence 2 6899999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCCCCCCCC
Q 022045 226 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS 303 (303)
Q Consensus 226 ~p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p~ggf~~ 303 (303)
+|++||+.||++||||+|+|+|||+|++||||||||+||++||+|++||++-.+.+||+|||||++++|| |+|||+|
T Consensus 241 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~kI~kI~~~g~~~~~a~t~~d~t~k~It-P~GGF~h 317 (389)
T 3iz5_C 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACTEFDRTEKDIT-PMGGFPH 317 (389)
T ss_dssp CCSSCCSCSSCCSCSSCSSSSSCCTTSCCCEEEECCEEEEEEEECCEEEESSSSCCCSCSSSSCCCCCSS-CTTCBTT
T ss_pred CCccccCCCCCCcccCCCCCCcccCCCccCCCCCCcceeeeeeEEEEeCCcccccccccccccccccccc-CCCCccc
Confidence 9999999999999999999999999999999999999999999999999832446899999999999999 9999997
No 3
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=1.3e-103 Score=756.99 Aligned_cols=297 Identities=57% Similarity=1.050 Sum_probs=277.7
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (303)
Q Consensus 1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle 80 (303)
|||||||+||||||||+|||||++|.|+|++||+||+++||+++||+|||+|||||+.++|+|+|+++|+++++||||||
T Consensus 1 mshRKf~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (391)
T 4a17_B 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVDRSGSRHNKKEVVEAVTVIE 80 (391)
T ss_dssp -CCCSSCCCCSSCGGGCSCCCCSCSSCCCSSCCCCCSSSSCEECEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceEeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 99999999999999999999999999999999999887899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhhhcccc
Q 022045 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (303)
Q Consensus 81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v 160 (303)
+||++|++++||.+|+.|+.++.++|++||++||.|+||||||.+...+|..+.+++.+ .....+++.+++++..|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~----~~~~~~~~~~~k~~~vi 156 (391)
T 4a17_B 81 CPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKNWANSNKKAFTHHEKNFDQ----KAQDLLLKRIEKYCSVV 156 (391)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCSTTSCCCTTHHHHHTCCH----HHHHHHHHHHHHHCSEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhcccccccchhhhhhhhhhcch----hHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999998888888776655421 23456677777765533
Q ss_pred c--------------CCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeEEEEeeccccccceEeeccCCC
Q 022045 161 R--------------KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226 (303)
Q Consensus 161 ~--------------~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~g~ 226 (303)
+ +|+||+|++|+|+++++++|||...+|++|+|+|+|++||+|||+|+|||||||||||||||+++
T Consensus 157 Rvi~hTqp~l~~l~qKK~~imEiqV~GGsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~ 236 (391)
T 4a17_B 157 RVIAHTNMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKHL 236 (391)
T ss_dssp EEEEEECGGGSCSSCCCCEEEEEEEECSCHHHHHHHHHHHTTCEECHHHHCCTTCEEEEEEECCCCCEECHHHHHCCCCC
T ss_pred EEEEeccccccCcCCCCceEEEEEecCCCHHHHHHHHHhhcCCEEehhHhcCCCCEEEEEEEEeCcccceeeeecccCCC
Confidence 3 78999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCCCCCCCC
Q 022045 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSLMGSFSS 303 (303)
Q Consensus 227 p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p~ggf~~ 303 (303)
|++||+.||++||||+|+|+|||+|++||||||||+||++||+|++||++ .+.+||+|||||++++|| |+|||+|
T Consensus 237 p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~~~~~a~t~~d~t~k~It-P~GGF~h 311 (391)
T 4a17_B 237 QKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKG-DDASNASTAGDVTDKAIT-PLGGFPH 311 (391)
T ss_dssp CTTCSSCSSSCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEECT-TCSSTTCCTTTCSCCCSS-CTTCBTT
T ss_pred CcccccCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCC-cccccccccccccccccc-CCCcccc
Confidence 99999999999999999999999999999999999999999999999998 556899999999999999 9999997
No 4
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.5e-101 Score=745.85 Aligned_cols=302 Identities=68% Similarity=1.163 Sum_probs=266.2
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (303)
Q Consensus 1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle 80 (303)
|||||||+||||||||+|||||+++.|+|++||+||.+++|+++||||||+||||||+++|+|+|+++|+|+++||||||
T Consensus 1 MshRKf~~PR~GSlgf~PRKRa~~~~~rvrswP~dd~~~~~~ltgflGyKaGMThi~~~~drpgS~~~~kev~~pVTVlE 80 (403)
T 2zkr_b 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVE 80 (403)
T ss_dssp ------CCCCSSCGGGCSCCCCSCSSCCCSCCCCSCSSCCBGGGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEE
T ss_pred CCccccCCCCccccccCcccccccCCCCcccCCCcCCCCCceeeEEEEEccCCeEEEeeccCCCCccCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHhhhccc-
Q 022045 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTV- 159 (303)
Q Consensus 81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~- 159 (303)
+|||+|++++||..|+.|+.++.++|++|+++++.|+|+++||.+...+|..+.+++...+..+..+..++.+++.+.+
T Consensus 81 tpP~~VvgvrGY~~~~~Gl~~~~~vwa~~ls~e~~Rr~~kn~~~~~kk~~~~~~kk~~~~~~~~~i~~~l~~~~k~~~~i 160 (403)
T 2zkr_b 81 TPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVI 160 (403)
T ss_dssp CCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCSSCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSC
T ss_pred cCCCEEEEEEeEEEecCCcccceEEeeccCChHHhhhhhcccccchhhhhhhcccccccchhhhhHHHHHHHhhccceEE
Confidence 9999999999999999999999999999999999999999999877666554444322111112234455555443333
Q ss_pred ------------cc-CCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeEEEEeeccccccceEeeccCCC
Q 022045 160 ------------IR-KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 226 (303)
Q Consensus 160 ------------v~-~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR~gf~g~ 226 (303)
++ |+++|+||+|++++++++++||...+|++|+|+|+|.+||+|||+|+|||||||||||||||+++
T Consensus 161 Rvi~hTq~~~~~l~qkk~~l~E~~v~g~~~~~k~~~A~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~~ 240 (403)
T 2zkr_b 161 RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240 (403)
T ss_dssp EEEEECCGGGSSCSCCCCCCEEEEBCSSSHHHHHHHHHHHHHSCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCCC
T ss_pred EEEEEecccccccccCCCEEEEEEecCcchhhhhhhhhccCCcEEchhhhccCCceEEEEEeecCCcceeceeecCcCCC
Confidence 23 88999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccc------cCcccccccCCcccccCCCCC
Q 022045 227 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE------SHSAMTEFDRSVYLLSSLMGS 300 (303)
Q Consensus 227 p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~------~~~~~~~~~~~~~~i~~p~gg 300 (303)
|++||+.||++||||+|+|+|||+|++||||||||+||++||+|++||++++. ..+|+|+||++.++|| |+||
T Consensus 241 p~ktH~~hR~~GsiG~~~P~RV~~g~~maGqmG~~~rT~~NlkI~rI~~~~~~~~~k~~~~~~~t~~d~~~k~It-P~GG 319 (403)
T 2zkr_b 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSIN-PLGG 319 (403)
T ss_dssp CSSTTTTTTCCSCSSCSSSCSCCTTSCCCEEEECCEEEESCCCEEEEECCCCCCSSCCCCCTTCCCCCCSSCSCC-SCCC
T ss_pred CcccccccCCCcccCCCCCCeECCCCcCCCCCCcceEEecCCEEEEECCcccccccccccccccccccccccccc-CCCC
Confidence 96699999999999999999999999999999999999999999999998521 5799999999999999 9999
Q ss_pred CCC
Q 022045 301 FSS 303 (303)
Q Consensus 301 f~~ 303 (303)
|+|
T Consensus 320 F~h 322 (403)
T 2zkr_b 320 FVH 322 (403)
T ss_dssp BTT
T ss_pred cce
Confidence 997
No 5
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-93 Score=680.78 Aligned_cols=278 Identities=39% Similarity=0.642 Sum_probs=245.8
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEE
Q 022045 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (303)
Q Consensus 1 m~~~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVle 80 (303)
|+ |+|+||||||||+|||||++|.|+|++||+|| +|+++||+|||+|||||+.+||+|+| ++|+++++||||||
T Consensus 1 M~--~~~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd---~~~L~~F~GYKAGMTHiv~~~drpgS-~~~kEv~~~VTivE 74 (365)
T 3j21_C 1 MG--KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGYKAGMTHILMIDDEPGL-TNGKEIFMPVTIIE 74 (365)
T ss_dssp CC--SCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC---SSEECCEEEEEEEEEEEEEESCSCSS-CSSSEEEEEEEEEE
T ss_pred CC--CCCCCCCCCCccCccccccccCCCccccCCCC---CceeeeeeeeccCCeEEEEEcCCCCC-cCCCEeeeeeEEEe
Confidence 65 78999999999999999999999999999986 89999999999999999999999999 99999999999999
Q ss_pred eCCeEEEEEeeeeeCCCCcccceeeccccch--------------------HHHHhhhhccccccccccccccccccccC
Q 022045 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLN--------------------EEVRRRFYKNWCKSKKKAFTKYTKKYETD 140 (303)
Q Consensus 81 v~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~--------------------~~~~r~~~k~~~~~~~~g~~~~~~k~~~~ 140 (303)
+||+.|++++||.+|+.|+.++.++|++||+ ++|.|+|++- .+++.+
T Consensus 75 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~~~~~~~y~~~~~k~~~~~~~e~~Rr~~~~------------~k~~~~- 141 (365)
T 3j21_C 75 TPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKMTFYKLLERRIATL------------PKNYTQ- 141 (365)
T ss_dssp CCCEEEEEEEEEEECSSSEEEEEEECCCCCCCCSCCCCCSSSCCCCCCCSCSHHHHSSCCC------------CSCHHH-
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEccccccchhhccccccccccccccchhhhhhhhhcc------------cccccc-
Confidence 9999999999999999999999999999999 6666655210 011000
Q ss_pred CCcccCHHHHHHHhh--hcccc-------------cCCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceEeE
Q 022045 141 DGKKDIQAQLEKMKK--YCTVI-------------RKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDI 205 (303)
Q Consensus 141 ~~~~~~k~~~g~~~k--~~~~v-------------~~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~VDV 205 (303)
+.++....+++.+++ .+.+| .+|+||+|++|+|+++++++|||...+|++|+++|+|++||+|||
T Consensus 142 ~~~~~~~~~~~~~~k~~~~~~iRvi~hTqp~~~~lqKK~~imEiqV~Ggsv~~k~~~a~~~lG~~i~v~~vF~~ge~VDV 221 (365)
T 3j21_C 142 EMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDV 221 (365)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEEEEECCSSCSSCCSCCEEEEEEECSSHHHHHHHHHHHTTCBCCHHHHCCTTCEEEE
T ss_pred cchhhHHHHHHHhhccCcceEEEEEEeccccccccccCccEEEEEecCCCHHHHHHHHHhhcCcEEechhccCCCCEEEE
Confidence 001223456666766 33332 388999999999999999999999999999999889999999999
Q ss_pred EEEeeccccccceEeeccCCCCCCCcCCCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccc
Q 022045 206 IGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 285 (303)
Q Consensus 206 ~GvTKGKGFqGv~KR~gf~g~p~ksH~~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~ 285 (303)
+|+|||||||||||||||+++|+++|..||++||||+|+|+|||+|++||||||||+||++||+|++||++ . ..+
T Consensus 222 ~GvTKGKGFqGvvKRwgf~~~p~~hg~~hR~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~----~~~ 296 (365)
T 3j21_C 222 IAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGEN-G----KLK 296 (365)
T ss_dssp EEECCCCEEECHHHHHCCCCCSSCCSSCSSCCCCSCCSSSCSCCSSSCCCEEESSCEEEEEEEEEEEEEEE-S----SCC
T ss_pred EEEeeccccccceeeccCCCCCCCCCCCCCCCcccCCCCCCcccCCCccCCccCcceeEecCCEEEEEcCC-C----Ccc
Confidence 99999999999999999999994444579999999999999999999999999999999999999999987 2 246
Q ss_pred cccCCcccccCCCCCCCC
Q 022045 286 EFDRSVYLLSSLMGSFSS 303 (303)
Q Consensus 286 ~~~~~~~~i~~p~ggf~~ 303 (303)
+||+++++|| |+|||+|
T Consensus 297 ~~d~t~k~It-P~GGF~h 313 (365)
T 3j21_C 297 LDENTEIEIT-PKGGFPH 313 (365)
T ss_dssp SSSSSCSCCC-CTTCBTT
T ss_pred cccccccccc-cCCCcee
Confidence 8999999999 9999998
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00 E-value=6e-90 Score=657.81 Aligned_cols=260 Identities=37% Similarity=0.655 Sum_probs=235.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCCccCCCCCCCCCCceeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCC
Q 022045 4 RKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPP 83 (303)
Q Consensus 4 ~k~~~pr~gsl~~~prkra~~~~p~~~~wP~~~~~~~~~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p 83 (303)
||||+||||||||+|||||+++.|+|++||+|| .+|+++||||||+||||||+++|+|+||++|+++++||||||++|
T Consensus 2 ~k~~~PR~Gsl~f~PrkRa~~~~~rv~s~P~~~--~~~~l~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~p 79 (338)
T 1vq8_B 2 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDD--GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPP 79 (338)
T ss_dssp CCCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC--SSCEECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCC
T ss_pred CCCCCCCCCcCccCccccccccCCCcccCCCCC--CCceEEEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeCC
Confidence 899999999999999999999999999999987 589999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhccccccccccccccccccccCCCcccCHHHHHHHh---------
Q 022045 84 LVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMK--------- 154 (303)
Q Consensus 84 ~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~--------- 154 (303)
|+|+|+++|.++.+|+++..++|++++++++.|++++.. . -..++.++||+
T Consensus 80 ~~V~~vk~~~~dgy~lq~~~~v~a~~~~~~~~r~~~kp~-----~---------------~~~~~~~~~~~~~~~~~~~~ 139 (338)
T 1vq8_B 80 MRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE-----D---------------HDPDAAEEQIRDAHEAGDLG 139 (338)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS-----S---------------CCHHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEEeeeccCceeEeeeeEeccccchhhcccccccc-----c---------------ccchhhHHHHHhhhccccee
Confidence 999999999988777778888999999988877664331 0 11246677776
Q ss_pred -----------h-hcccccCCCeEEEEEecCCCchhhhhhhhccc--CccccccccccCCceEeEEEEeeccccccceEe
Q 022045 155 -----------K-YCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFF--EKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 220 (303)
Q Consensus 155 -----------k-~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~~l--G~~i~v~~vF~~Gq~VDV~GvTKGKGFqGv~KR 220 (303)
+ +++. +++++|+||+|++++++++++||...+ |++|+++|+|++||+|||+|+||||||||||||
T Consensus 140 ~ir~i~~tqp~k~agv~-~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~vF~~Gq~VDV~gvTKGKGFqGv~KR 218 (338)
T 1vq8_B 140 DLRLITHTVPDAVPSVP-KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKR 218 (338)
T ss_dssp EEEEEEECCGGGCTTSC-CCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTTCEEEEEEECCCCCEECHHHH
T ss_pred EEEEEEEeccccccCCC-ccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhhcccCCCceeeEEEEeCCCceeeeee
Confidence 4 4443 148999999999989999999987777 999999889999999999999999999999999
Q ss_pred eccCCCCCCCcC---CCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEccCccccCcccccccCCcccccCC
Q 022045 221 WGVTRLPRKTHR---GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRSVYLLSSL 297 (303)
Q Consensus 221 ~gf~g~p~ksH~---~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~~~~~~~~~~~~~~~~~~i~~p 297 (303)
|||+++| ++|+ .||++||||+|+|+|||||++||||||||+||++||+|++||++ ++|| |
T Consensus 219 wgf~~~p-~sHG~sk~hR~~GsiG~~~P~RV~~g~kmaGqmG~~~rT~~Nl~I~kId~e---------------~~i~-p 281 (338)
T 1vq8_B 219 WGVQKRK-GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG---------------DEPT-V 281 (338)
T ss_dssp HCCCCCC-GGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEE---------------SSSC-C
T ss_pred cCCCCCC-cccCCCccCCCCcccCCCCCCeeccCCcCCCCcCCceEEEeccEEEEcCCC---------------Cccc-c
Confidence 9999999 6764 69999999999999999999999999999999999999999975 5899 9
Q ss_pred CCCCCC
Q 022045 298 MGSFSS 303 (303)
Q Consensus 298 ~ggf~~ 303 (303)
+|||+|
T Consensus 282 ~GGf~~ 287 (338)
T 1vq8_B 282 DGGFVN 287 (338)
T ss_dssp TTCBTT
T ss_pred CCCccc
Confidence 999997
No 7
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=4.2e-66 Score=464.92 Aligned_cols=177 Identities=20% Similarity=0.278 Sum_probs=164.0
Q ss_pred eeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCCeEEEEEeeeeeCCC----CcccceeeccccchHHHHhhh
Q 022045 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPR----GLRSLCTVWAQHLNEEVRRRF 118 (303)
Q Consensus 43 ~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p~~V~~i~~y~kt~~----Gy~av~~~~~~~~~~~~~r~~ 118 (303)
++|+||+|+||||||++ +|..+||||||++||+|+|+ +|.+ ||+|+|
T Consensus 1 R~Gllg~KiGMt~if~~----------~G~~ipvTVl~~~~~~V~q~----kt~e~~~dGY~Avq--------------- 51 (211)
T 2ftc_C 1 RVGLIALKLGMMPLWTK----------DGQKHVVTLLQVQDCHVLKY----TSKENCNGKMATLS--------------- 51 (211)
T ss_pred CceEEEEEcceEEEECC----------CCcEEEEEEEEEcCCEEEEE----EccccCCCCEEEEE---------------
Confidence 47999999999999999 89999999999999999999 7764 788875
Q ss_pred hccccccccccccccccccccCCCcccCHHHHHHHhhhcccccCCCeEEEEEecCCCchhhhhhhhcccCcccccccccc
Q 022045 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQ 198 (303)
Q Consensus 119 ~k~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~ 198 (303)
+||++.+++ +.++|++|||+|++++ |+++|+||+++++ +.+++|++|++ |+|+
T Consensus 52 ---------vg~~~~~~~-------~~~kp~~Ghf~kagv~--pkr~l~Efrv~~~--------~~~~~G~~l~v-~~F~ 104 (211)
T 2ftc_C 52 ---------VGGKTVSRF-------RKATSILEFYRELGLP--PKQTVKIFNITDN--------AAIKPGTPLYA-AHFR 104 (211)
T ss_pred ---------Eeeeecccc-------cCChhHhhhHHHcCCC--cccEEEEEEeCCC--------CccccCCEEEh-Hhcc
Confidence 888877654 7899999999999976 9999999999764 45689999999 6999
Q ss_pred CCceEeEEEEeeccccccceEeeccCCCCCCCcC---CCCCCccccCCCCCCcccCCcCCCCCCCeeeeeeceEEEEEcc
Q 022045 199 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 275 (303)
Q Consensus 199 ~Gq~VDV~GvTKGKGFqGv~KR~gf~g~p~ksH~---~hR~~GSiG~~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~ 275 (303)
+||+|||+|+|||||||||||||||+++| ++|+ .||++||||+|+|+|||||++||||||++++|++||+|++||+
T Consensus 105 ~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GSiG~~~PgRV~kgkkmaG~mG~~~~T~~Nl~I~~id~ 183 (211)
T 2ftc_C 105 PGQYVDVTAKTIGKGFQGVMKRWGFKGQP-ATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINT 183 (211)
T ss_pred CCceEEEEEEEcCCcceeceeecCCCCCC-cccCCCCCCCCCcccCCCCCCeecCCcccCCCCCCeeEEEeccEEEEECC
Confidence 99999999999999999999999999999 7875 6999999999999999999999999999999999999999998
Q ss_pred C
Q 022045 276 A 276 (303)
Q Consensus 276 ~ 276 (303)
+
T Consensus 184 e 184 (211)
T 2ftc_C 184 K 184 (211)
T ss_pred C
Confidence 8
No 8
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=6e-66 Score=462.70 Aligned_cols=177 Identities=24% Similarity=0.340 Sum_probs=165.1
Q ss_pred eeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCCeEEEEEeeeeeCCC--CcccceeeccccchHHHHhhhhc
Q 022045 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPR--GLRSLCTVWAQHLNEEVRRRFYK 120 (303)
Q Consensus 43 ~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p~~V~~i~~y~kt~~--Gy~av~~~~~~~~~~~~~r~~~k 120 (303)
++|+||+|+||||||++ +|..+||||||++||+|+|+ +|.+ ||+|+|
T Consensus 1 m~Glig~KiGMt~if~~----------~G~~ipvTVl~~~~~~V~q~----kt~e~dGY~Avq----------------- 49 (209)
T 3r8s_D 1 MIGLVGKKVGMTRIFTE----------DGVSIPVTVIEVEANRVTQV----KDLANDGYRAIQ----------------- 49 (209)
T ss_dssp CCCEEEEEEEEEEEECT----------TCCEEEEEEEECCCEEEEEE----ECHHHHSSCEEE-----------------
T ss_pred CcEEEEEEeceeEEECC----------CCcEEEEEEEEecCCEEEEE----EccCCCCeEEEE-----------------
Confidence 46999999999999999 89999999999999999999 8874 888885
Q ss_pred cccccccccccccccccccCCCcccCHHHHHHHhhhcccccCCCeEEEEEecCCCchhhhhhhhcccCccccccccccCC
Q 022045 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKD 200 (303)
Q Consensus 121 ~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~G 200 (303)
+||++.+++ +.++|++|||+|++++ |+++|.||++.+. +.+++|++|++ |+|++|
T Consensus 50 -------vg~g~~~~~-------~~~Kp~~Ghf~kagv~--pkr~l~Efrv~~~--------~~~~~G~~i~v-~~F~~G 104 (209)
T 3r8s_D 50 -------VTTGAKKAN-------RVTKPEAGHFAKAGVE--AGRGLWEFRLAEG--------EEFTVGQSISV-ELFADV 104 (209)
T ss_dssp -------EEESCCCGG-------GSCHHHHHHHHHHTCC--CCSEEEEEECCTT--------CCCCTTCEECG-GGGGSC
T ss_pred -------EEEeecCcc-------cCCHHHhhHHHHcCCC--CCeEEEEEecCCc--------ccCCCCCEEEe-eeEcCC
Confidence 888887765 7999999999999977 9999999999653 45689999999 799999
Q ss_pred ceEeEEEEeeccccccceEeeccCCCCCCCcC---CCCCCccccC-CCCCCcccCCcCCCCCCCeeeeeeceEEEEEccC
Q 022045 201 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 276 (303)
Q Consensus 201 q~VDV~GvTKGKGFqGv~KR~gf~g~p~ksH~---~hR~~GSiG~-~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~ 276 (303)
|+|||+|+||||||||+||||||+++| +||+ .||++||||+ |+|+|||||++||||||++++|++||+|++||.+
T Consensus 105 ~~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~T~~Nl~I~kid~e 183 (209)
T 3r8s_D 105 KKVDVTGTSKGKGFAGTVKRWNFRTQD-ATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAE 183 (209)
T ss_dssp CEEEEEEECCCCCEECHHHHHCCCCCC-SSTTCCSCSSSCCCCCCBTTBCSCCTTCCCSEECSSSEEEEEEEEEEEEEGG
T ss_pred CEEEEEEEEeccccceeeeEcCCCCCC-cccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccEEEecCEEEEEcCC
Confidence 999999999999999999999999999 9997 6999999999 5999999999999999999999999999999987
No 9
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=4.1e-64 Score=449.92 Aligned_cols=172 Identities=28% Similarity=0.402 Sum_probs=160.8
Q ss_pred eeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCCeEEEEEeeeeeCCC--CcccceeeccccchHHHHhhhhc
Q 022045 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPR--GLRSLCTVWAQHLNEEVRRRFYK 120 (303)
Q Consensus 43 ~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p~~V~~i~~y~kt~~--Gy~av~~~~~~~~~~~~~r~~~k 120 (303)
+.|+||+|+||||||++ |..+||||||++||+|+|+ +|.+ ||+|+|
T Consensus 1 m~Gllg~KiGMt~if~~-----------G~~ipvTVi~~~~~~V~q~----kt~e~dGY~Avq----------------- 48 (206)
T 3v2d_E 1 MKGILGVKVGMTRIFRD-----------DRAVPVTVILAGPCPVVQR----RTPEKDGYTAVQ----------------- 48 (206)
T ss_dssp CCEEEEEEEEEEEEESS-----------SCEEEEEEEECCCEEEEEE----ECHHHHSSCEEE-----------------
T ss_pred CceEEEEEccceeEEcC-----------CCEEEEEEEEecCCEEEEE----EccCcCCeEEEE-----------------
Confidence 46999999999999996 8999999999999999999 8875 888885
Q ss_pred cccccccccccccccccccCCCcccCHHHHHHHhhhcccccCCCeEEEEEecCCCchhhhhhhhcccCccccccccccCC
Q 022045 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKD 200 (303)
Q Consensus 121 ~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~G 200 (303)
+||++.+++ +.++|++|||+|++++ |+++|.||++.+ ++|++|++ |+|++|
T Consensus 49 -------vg~~~~~~~-------~~~kp~~Ghf~kagv~--pkr~l~Efrv~~------------~~G~~i~v-~~F~~G 99 (206)
T 3v2d_E 49 -------LGFLPQNPK-------RVNRPLKGHFAKAGVE--PVRILREIRDFN------------PEGDTVTV-EIFKPG 99 (206)
T ss_dssp -------EEEEECCGG-------GCCHHHHHHHHTTCCC--CEEEEEEEETCC------------CSSSEECG-GGCCTT
T ss_pred -------EEeccCCcc-------CCCHHHhhhHHHcCCC--cCeEEEEEECCC------------CCCCEEEe-eeecCC
Confidence 888887765 7899999999999976 999999999852 58999999 799999
Q ss_pred ceEeEEEEeeccccccceEeeccCCCCCCCcC---CCCCCccccC-CCCCCcccCCcCCCCCCCeeeeeeceEEEEEccC
Q 022045 201 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 276 (303)
Q Consensus 201 q~VDV~GvTKGKGFqGv~KR~gf~g~p~ksH~---~hR~~GSiG~-~~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~ 276 (303)
|+|||+|+||||||||+||||||+++| +||+ .||++||||+ |+|+|||||++||||||++++|++||+|++||.+
T Consensus 100 ~~VDV~g~sKGKGFqGv~KR~gf~~~p-~tHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~T~~Nl~I~kid~e 178 (206)
T 3v2d_E 100 ERVDVTGTSKGRGFAGVMKRWNFAGGP-DSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPE 178 (206)
T ss_dssp CEEEEEEECCCCCEECHHHHSCCCCCC-SSTTCCSCTTCCCCCCCBTTBCSCCTTCCCCEECSSSEEEEEEEEEEEEETT
T ss_pred CEEEEEEEEeccccceeeeEcccCCCC-cccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccEEEeccEEEEEcCC
Confidence 999999999999999999999999999 9997 6999999999 5999999999999999999999999999999988
No 10
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=4e-63 Score=446.56 Aligned_cols=173 Identities=24% Similarity=0.336 Sum_probs=156.3
Q ss_pred eeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCCeEEEEEeeeeeCCCCcccceeeccccchHHHHhhhhcccc
Q 022045 44 TAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWC 123 (303)
Q Consensus 44 ~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p~~V~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k~~~ 123 (303)
+||||+|+||||||++ |+++||||||++||+|+|+++|. .+||.|+|
T Consensus 2 ~g~lg~K~GMT~i~~~-----------g~~~pVTVie~~p~~V~~~kt~~--~dgy~avq-------------------- 48 (211)
T 2zjr_B 2 KGILGTKIGMTQIWKN-----------DRAIPVTVVLAGPCPIVQRKTAQ--TDGYEAVQ-------------------- 48 (211)
T ss_dssp CEEEEEEEEEEEEEET-----------TEEEEEEEEECCCEEEEEEECTT--TTSSCEEE--------------------
T ss_pred eeEeEEecCcEeEEeC-----------CCEEEEEEEEeCCcEEEEEecee--cCCCcEEE--------------------
Confidence 5999999999999996 79999999999999999995442 24888886
Q ss_pred ccccccccccccccccCCCcccCHHHHHHHhhhcccccCCCeEEEEEecCCCchhhhhhhhcccCccccccccccCCceE
Q 022045 124 KSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMI 203 (303)
Q Consensus 124 ~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~Gq~V 203 (303)
+||++.+++ +.++|+++||+|+++. |+++|+||+|++ ++|++|++ |+|++||+|
T Consensus 49 ----vg~~~~~~~-------~~tkp~~g~~~kagv~--~k~~l~Efrv~~------------~~G~~i~v-~~F~~G~~V 102 (211)
T 2zjr_B 49 ----IGYAPKAER-------KVNKPMQGHFAKAGVA--PTRILREFRGFA------------PDGDSVNV-DIFAEGEKI 102 (211)
T ss_dssp ----EECSCCCGG-------GCCHHHHHHHHTTTCC--CCSCEEEETTCC------------CSSEECST-TTSCTTCEE
T ss_pred ----EEEEEeccc-------ccChhhhhhHHHcCCC--CCcEEEEEEcCC------------cCCCEeEh-hhhcCCCce
Confidence 666655443 7899999999999876 999999999853 58999999 799999999
Q ss_pred eEEEEeeccccccceEeeccCCCCCCCcC---CCCCCccccCC-CCCCcccCCcCCCCCCCeeeeeeceEEEEEccC
Q 022045 204 DIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGAW-HPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 276 (303)
Q Consensus 204 DV~GvTKGKGFqGv~KR~gf~g~p~ksH~---~hR~~GSiG~~-~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~ 276 (303)
||+|+|||||||||||||||+++| ++|+ .||++||||++ +|+|||||++|||||||+++|++||+|++||++
T Consensus 103 DV~g~tKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GsiG~~~~PgRV~kgkkmaG~mG~~~~T~~Nl~I~~id~e 178 (211)
T 2zjr_B 103 DATGTSKGKGTQGVMKRWNFAGGP-ASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRAG 178 (211)
T ss_dssp EEEEECCEEEEECHHHHHCCCCCC-SSSSCSSCSCSCCCCCCSSTTCSCCTTCCCCEEEECCEEEEEEEEEEEEETT
T ss_pred EEEEEEcCCcceeceeecCCCCCC-cccCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCccEeEeccEEEEEcCC
Confidence 999999999999999999999999 7875 59999999975 999999999999999999999999999999988
No 11
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7e-65 Score=469.28 Aligned_cols=181 Identities=20% Similarity=0.315 Sum_probs=114.5
Q ss_pred eeeeEeEEeecceEEEcccCCCCCcCCCCceEEeEEEEEeCCeEE-EEEeeeeeCCCCcccceeeccccchHHHHhhhhc
Q 022045 42 RLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVV-VGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120 (303)
Q Consensus 42 ~~~G~iG~KvGMT~i~~~~d~~~s~~~g~g~~~PVTVlev~p~~V-~~i~~y~kt~~Gy~av~~~~~~~~~~~~~r~~~k 120 (303)
+++||||+|+||||||++ +|.++||||||++||+| +|+ |..+.+||+|+|+
T Consensus 42 ~~~G~lG~K~GMT~if~e----------~G~~vPVTVle~~p~~Vv~q~--kt~e~dGy~Avqv---------------- 93 (259)
T 3bbo_F 42 AGVGVMATKLGMMSFFEE----------SGTVVPVTVVGFREGNIVTQI--KTEATDGYNAVQV---------------- 93 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEEEecCcEEEEcc----------CCeEEEEEEEEECCCEEEEEE--eecCCCCcEEEEE----------------
Confidence 688999999999999999 68999999999999999 555 5556679999974
Q ss_pred cccccccccccccccccccCCCcccCHHHHHHHhhhcccccCCCeEEEEEecCCCchhhhhhhhcccCccccccccccCC
Q 022045 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKD 200 (303)
Q Consensus 121 ~~~~~~~~g~~~~~~k~~~~~~~~~~k~~~g~~~k~~~~v~~k~~l~E~~v~~~~~~~~~~~a~~~lG~~i~v~~vF~~G 200 (303)
||++.++ ++.++++.+||+|+++. |+++|+||+|++. +.+++|++|+++++|++|
T Consensus 94 --------g~~~~k~-------k~~tKp~~Ghf~kagv~--~kr~l~Efrv~~~--------~~~~~G~~i~v~~vF~~G 148 (259)
T 3bbo_F 94 --------GYRRVRD-------RKLTKPEMGHLEKSGII--PLRHLQEFRLQSI--------DGFEVTQKLDFGELFKEG 148 (259)
T ss_dssp -------------CC-------SSCCHHHHTTCSSCCCC--CSSCCCCCCSCCC--------CTTTTCCCCSSCSSSCSS
T ss_pred --------EEeeech-------hhCChhhhhhHHHcCCC--CCcEEEEEecCCh--------hhcccccEeehhheecCC
Confidence 4444333 37899999999999875 9999999999742 335899999996569999
Q ss_pred ceEeEEEEeeccccccceEeeccCCCCCCCc--CCCCCCccccCC-CCCCcccCCcCCCCCCCeeeeeeceEEEEEccC
Q 022045 201 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGAW-HPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 276 (303)
Q Consensus 201 q~VDV~GvTKGKGFqGv~KR~gf~g~p~ksH--~~hR~~GSiG~~-~PgrV~kgkkmaGqmG~~~rT~~Nl~I~kId~~ 276 (303)
|+|||+|+|||||||||||||||+++| ++| +.||++||||+| +|+|||||++|||||||+++|++||+|++||++
T Consensus 149 q~VDV~G~TKGKGFqGv~KRwgf~g~p-~sHGsk~hR~~GSiG~~~~PgRV~kGkkMaGqmG~~~~T~~Nl~IvrId~e 226 (259)
T 3bbo_F 149 DLVDVSGTTIGKGFQGGIKRHNFKRGQ-MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQ 226 (259)
T ss_dssp SCCCCCCBCCCCSSCCSSSSSCCCCCC-SSSCSSTTTSCCCCSCSSCCTTTTTTSCCCCCCCCCBCCCCCCCEEEEETT
T ss_pred CEEEEEEEecCCcceeeeeecCcCCCC-CcCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCceEEEeccEEEEECCC
Confidence 999999999999999999999999999 788 479999999999 999999999999999999999999999999988
Done!