RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022045
(303 letters)
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 244 bits (625), Expect = 2e-80
Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 6/280 (2%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
+ PR GSLGF PRKR++ + ++P DD + F GYKAGMTH+V ++P
Sbjct: 2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S E VT+IETPP+ V + Y TP G R L VW + E+ R
Sbjct: 60 SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAHLMEIQVNGGSVAQKVDFAY 184
A + +E D +V +KK +ME +V GGSV+ ++D A
Sbjct: 120 DPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHAL 179
Query: 185 GFFE--KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACI 240
E + ++ +F+ E D+ GVTKGKG +G V RWGV + K R R++ +
Sbjct: 180 DIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNL 239
Query: 241 GAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES 280
G W+P+RV TV + GQ GYH RTE+NK++ +G+ + +
Sbjct: 240 GPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPT 279
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 88.2 bits (218), Expect = 1e-21
Identities = 38/233 (16%), Positives = 59/233 (25%), Gaps = 57/233 (24%)
Query: 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSL 102
+ +G K GMT I + G + VT+IE V V
Sbjct: 1 MIGLVGKKVGMTRIFTE---DGVSI-------PVTVIEVEANRVTQVKDLANDG------ 44
Query: 103 CTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRK 162
Y+ + K E
Sbjct: 45 ----------------YRAIQVTTGAKKANRVTKPE----------------------AG 66
Query: 163 KAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 222
++ G ++ F Q +F + +D+ G +KGKG+ G V RW
Sbjct: 67 HFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWN 126
Query: 223 VTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEMNKKIYK 272
L P +V AGQ G T + + +
Sbjct: 127 FRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVR 179
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
thermophilus [TaxId: 274]}
Length = 205
Score = 78.2 bits (192), Expect = 6e-18
Identities = 40/230 (17%), Positives = 59/230 (25%), Gaps = 62/230 (26%)
Query: 46 FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTV 105
LG K GMT I RD + VT+I P VV K L +
Sbjct: 4 ILGVKVGMTRIFRD-----------DRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFL 52
Query: 106 WAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAH 165
+ + +
Sbjct: 53 P------------------------------------------------QNPKRVNRPLK 64
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
+ V + E +F+ E +D+ G +KG+G+ GV+ RW
Sbjct: 65 GHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAG 124
Query: 226 LPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEMNKKIYK 272
P + P RV AG G T MN ++
Sbjct: 125 GPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVD 174
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 69.7 bits (170), Expect = 8e-15
Identities = 40/230 (17%), Positives = 59/230 (25%), Gaps = 62/230 (26%)
Query: 46 FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTV 105
LG K GMT I K + VT++ P +V
Sbjct: 4 ILGTKIGMTQIW-----------KNDRAIPVTVVLAGPCPIVQR---------------- 36
Query: 106 WAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKAH 165
K +TD + K ++ K
Sbjct: 37 -----------------------------KTAQTDGYEAVQIGYAPKAERKV---NKPMQ 64
Query: 166 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 225
+ +F + +F + E ID G +KGKG +GV+ RW
Sbjct: 65 GHFAKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAG 124
Query: 226 LPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEMNKKIYK 272
P P RV AG G T N ++ +
Sbjct: 125 GPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVE 174
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 29.3 bits (65), Expect = 0.24
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 109 HLNEEVRRRFYK------NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRK 162
H NE +RR+F W ++K + + + ++ Q+ ++K+Y I
Sbjct: 1 HANERLRRQFAAQANAIGPWIQNKMEEIAR-----SSIQITGALEDQMNQLKQYEHNIIN 55
Query: 163 KAHLME 168
+ ++
Sbjct: 56 YKNNID 61
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 30.0 bits (67), Expect = 0.29
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYETDDGKKD 145
Y++W K + +K+YET K+
Sbjct: 213 MKYRDWIIRSKFEWHTLSKEYETQKVPKE 241
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 29.3 bits (65), Expect = 0.50
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYETDDGKKD 145
YK W KK+ + K K+Y+ +
Sbjct: 241 NSYKEWISKKKEEYNKQAKQYQEYQKGNN 269
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 28.6 bits (63), Expect = 0.57
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYET-DDGKKDIQAQLEKMKKYCTV--IRKKAHLMEIQVNG 173
RF +W + K E + + ++ + + + +M
Sbjct: 28 RFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVM-FFFRN 86
Query: 174 GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII-----GVTKGKGY 214
+ + G A+ K EM+DII G KG+G
Sbjct: 87 ----KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGL 128
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 28.1 bits (62), Expect = 1.3
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQ-----LEKMKKYC 157
+ Y W KKK + + K+ + + I + + +K+
Sbjct: 222 KSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQEL 267
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma
genitalium [TaxId: 2097]}
Length = 140
Score = 25.8 bits (56), Expect = 4.1
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 105 VWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRKKA 164
+ A L + + R W K KAF++ ++ ++ ++ QLE KY + KK
Sbjct: 28 IQADFLEYDTKERQLNEWQKLIVKAFSENIFSFQKKIEEQQLKNQLEIQTKYNKISGKKI 87
Query: 165 HLMEIQV 171
L+ V
Sbjct: 88 DLLTTAV 94
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 25.8 bits (57), Expect = 5.4
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 87 VGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+GVV Y +T L + + N + +R Y
Sbjct: 97 IGVVTYQETIPALVAFQ----KTFNLRLDQRSYIT 127
>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga
maritima [TaxId: 2336]}
Length = 301
Score = 26.0 bits (57), Expect = 5.7
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 28/120 (23%)
Query: 10 RHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHK 69
R G L + +V F + + + +K L+
Sbjct: 80 REGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGILFKVVKEG---KDAMQSIDLYM 136
Query: 70 K--ETCEAVTIIETPPLVVV--------------GVVGYVKTPRGLRSLCTVWAQHLNEE 113
+ E E ++ L+V G +G VK + L++E
Sbjct: 137 RSLEIEEVRKHMDKNILIVKDGPAARELPFEENVGPIGLVK---------NIGVTELSKE 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,173,169
Number of extensions: 56962
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 19
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)