Your job contains 1 sequence.
>022046
MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF
LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI
NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETEN
PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA
YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKKSC
SRF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022046
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2050429 - symbol:CDA1 "cytidine deaminase 1" s... 905 9.3e-91 1
TAIR|locus:2134358 - symbol:AT4G29610 species:3702 "Arabi... 659 1.1e-64 1
TAIR|locus:2134338 - symbol:AT4G29600 species:3702 "Arabi... 653 4.7e-64 1
TAIR|locus:2134373 - symbol:AT4G29620 species:3702 "Arabi... 588 3.6e-57 1
TAIR|locus:2134403 - symbol:AT4G29640 species:3702 "Arabi... 560 3.4e-54 1
TAIR|locus:2134413 - symbol:AT4G29570 species:3702 "Arabi... 496 2.0e-47 1
TAIR|locus:2134418 - symbol:AT4G29650 species:3702 "Arabi... 316 9.7e-46 2
TAIR|locus:2134388 - symbol:AT4G29630 species:3702 "Arabi... 471 9.1e-45 1
UNIPROTKB|Q9KSM5 - symbol:cdd "Cytidine deaminase" specie... 244 4.0e-37 2
TIGR_CMR|VC_1231 - symbol:VC_1231 "cytidine deaminase" sp... 244 4.0e-37 2
TAIR|locus:2134428 - symbol:AT4G29580 species:3702 "Arabi... 393 1.7e-36 1
TIGR_CMR|SO_2791 - symbol:SO_2791 "cytidine deaminase" sp... 295 4.0e-26 1
UNIPROTKB|P0ABF6 - symbol:cdd species:83333 "Escherichia ... 258 3.4e-22 1
TIGR_CMR|CPS_1969 - symbol:CPS_1969 "cytidine deaminase" ... 160 1.9e-11 1
ASPGD|ASPL0000049793 - symbol:AN11146 species:162425 "Eme... 148 4.3e-10 1
UNIPROTKB|E1C6V1 - symbol:CDA "Uncharacterized protein" s... 137 7.3e-09 1
UNIPROTKB|E1BNY1 - symbol:CDA "Uncharacterized protein" s... 136 9.3e-09 1
TIGR_CMR|CHY_1553 - symbol:CHY_1553 "cytidine deaminase" ... 133 2.0e-08 1
WB|WBGene00000392 - symbol:cdd-2 species:6239 "Caenorhabd... 126 1.2e-07 1
UNIPROTKB|Q20628 - symbol:cdd-2 "Protein CDD-2" species:6... 126 1.2e-07 1
MGI|MGI:1919519 - symbol:Cda "cytidine deaminase" species... 124 2.0e-07 1
UNIPROTKB|I3LAH9 - symbol:CDA "Uncharacterized protein" s... 122 3.3e-07 1
ZFIN|ZDB-GENE-040426-1911 - symbol:cda "cytidine deaminas... 122 3.3e-07 1
TIGR_CMR|SPO_2930 - symbol:SPO_2930 "cytidine deaminase" ... 120 5.6e-07 1
RGD|1311101 - symbol:Cda "cytidine deaminase" species:101... 117 1.2e-06 1
POMBASE|SPAC1556.04c - symbol:cdd1 "cytidine deaminase Cc... 116 1.5e-06 1
UNIPROTKB|P32320 - symbol:CDA "Cytidine deaminase" specie... 115 2.0e-06 1
DICTYBASE|DDB_G0288933 - symbol:cda "cytidine deaminase" ... 112 4.3e-06 1
TIGR_CMR|BA_1895 - symbol:BA_1895 "cytidine deaminase" sp... 112 4.3e-06 1
UNIPROTKB|E2RBK6 - symbol:CDA "Uncharacterized protein" s... 111 5.5e-06 1
TIGR_CMR|BA_4525 - symbol:BA_4525 "cytidine deaminase" sp... 107 1.5e-05 1
ZFIN|ZDB-GENE-041114-88 - symbol:zgc:103586 "zgc:103586" ... 106 1.9e-05 1
UNIPROTKB|O53367 - symbol:cdd "Cytidine deaminase" specie... 99 0.00011 1
SGD|S000004235 - symbol:CDD1 "Cytidine deaminase" species... 102 0.00016 1
>TAIR|locus:2050429 [details] [associations]
symbol:CDA1 "cytidine deaminase 1" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004126 "cytidine deaminase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009972 "cytidine deamination"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISS;IDA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334
PROSITE:PS00903 GO:GO:0005829 EMBL:CP002685 GO:GO:0046872
GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927 EMBL:AC005917
eggNOG:COG0295 KO:K01489 OMA:NRSHAPY TIGRFAMs:TIGR01355 HSSP:P13652
EMBL:AF134487 EMBL:AY128366 EMBL:BT008708 EMBL:AJ005261
EMBL:AJ005687 IPI:IPI00547274 PIR:T51733 RefSeq:NP_179547.1
UniGene:At.25410 UniGene:At.69521 ProteinModelPortal:O65896
SMR:O65896 IntAct:O65896 STRING:O65896 PaxDb:O65896 PRIDE:O65896
EnsemblPlants:AT2G19570.1 GeneID:816476 KEGG:ath:AT2G19570
TAIR:At2g19570 InParanoid:O65896 PhylomeDB:O65896
ProtClustDB:PLN02402 BioCyc:ARA:AT2G19570-MONOMER
BioCyc:MetaCyc:AT2G19570-MONOMER ArrayExpress:O65896
Genevestigator:O65896 Uniprot:O65896
Length = 301
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 187/306 (61%), Positives = 225/306 (73%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M++P FVI++ EAES A++ G++V+QLLP+LVK AQ+ AR PISKF+V VGLGSSGRIF
Sbjct: 1 MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEFP LPLH SIHAEQFL+TNL LN E L AVSAAPCGHCRQFLQE+R+ +I
Sbjct: 61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120
Query: 121 NICITSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFN--- 169
I IT N++ + L LP RFGP+DLL KD PLLLE+H N + +
Sbjct: 121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180
Query: 170 -LCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
+CNG T++ + LK AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYN
Sbjct: 181 SICNGN---TDSSAD-LKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYN 236
Query: 229 PSLGPVQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
PS+GPVQAALV Y+A YERIV A LVEKEDAVVRQEH ARLLL+ ISPKCE
Sbjct: 237 PSMGPVQAALVDYVA----NGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPKCE 292
Query: 289 FNVFHC 294
F VFHC
Sbjct: 293 FKVFHC 298
>TAIR|locus:2134358 [details] [associations]
symbol:AT4G29610 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016193
Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 EMBL:AL161575 EMBL:AL079344 eggNOG:COG0295
TIGRFAMs:TIGR01355 HSSP:P13652 HOGENOM:HOG000218616 IPI:IPI00539716
PIR:T09924 RefSeq:NP_194690.1 UniGene:At.54547
ProteinModelPortal:Q9SU86 SMR:Q9SU86 PaxDb:Q9SU86 PRIDE:Q9SU86
EnsemblPlants:AT4G29610.1 GeneID:829082 KEGG:ath:AT4G29610
TAIR:At4g29610 InParanoid:Q9SU86 OMA:FNEITEV PhylomeDB:Q9SU86
ArrayExpress:Q9SU86 Genevestigator:Q9SU86 Uniprot:Q9SU86
Length = 293
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 142/286 (49%), Positives = 178/286 (62%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S A + G+ LP L+ A +LAR P+S F VGAVGL SSG +FLG NVEFP LPLH
Sbjct: 8 SEAAEEGVRGPSDLPKLIDKAMSLARAPVSTFKVGAVGLTSSGEVFLGVNVEFPNLPLHH 67
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSIN 128
+IHAEQFL+TNL LN+ +L H+AVS APCGHCRQF QE+RN +I I I
Sbjct: 68 TIHAEQFLVTNLALNSMKKLTHIAVSVTGTIFGAPCGHCRQFYQEMRNAPEIEILIKRPK 127
Query: 129 SNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYA 188
++ L L+P+RFGP+ +L +D LLLE N + + + E+ K
Sbjct: 128 DGIDEFMSLKSLMPERFGPDSILPEDASLLLEQRDNSLVLSDPEEICSDPEDCSHT-KCR 186
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAXXXX 248
AL AANKS+APYSKCPSGVA++ C G +YKG Y+ES AYNPSLGPV+AALV ++A
Sbjct: 187 ALAAANKSYAPYSKCPSGVALI-CGGEVYKGWYIESVAYNPSLGPVEAALVDFVARGGGK 245
Query: 249 XXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
+ I LVE +D V QE AR L I+PKC+F V HC
Sbjct: 246 E----FNEITEVVLVEMKDVKVSQEATARTFLDKIAPKCDFKVLHC 287
>TAIR|locus:2134338 [details] [associations]
symbol:AT4G29600 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016193
Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334 EMBL:CP002687
GO:GO:0046872 GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927
EMBL:AL161575 EMBL:AL079344 TIGRFAMs:TIGR01355 HSSP:P13652
IPI:IPI00539525 PIR:T09923 RefSeq:NP_194689.1 UniGene:At.54546
ProteinModelPortal:Q9SU87 SMR:Q9SU87 EnsemblPlants:AT4G29600.1
GeneID:829081 KEGG:ath:AT4G29600 OMA:SKHEAEG ArrayExpress:Q9SU87
Genevestigator:Q9SU87 Uniprot:Q9SU87
Length = 307
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 148/302 (49%), Positives = 191/302 (63%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EA S G+T LP L++ A +LAR PISK+ VGAVG SSGR++L
Sbjct: 5 DKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRVYL 60
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVEFPGLPLH SIH EQFL+TNL LN+E L+ LAV+ APCG+CRQFL E
Sbjct: 61 GVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFLME 120
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
N DI I + S + E + L LLP RF P+D+L K PLLLE N ++ +
Sbjct: 121 TSNELDIKILLKSKHEAEGSFSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTE 180
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY++ PSGVA+ D EG Y+G Y+ES AY+PSLGP
Sbjct: 181 EICSSDC--SHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSLGP 238
Query: 234 VQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVF 292
VQAALV ++A + +IV A LVEK +A V QE A+++L I+ P C+F VF
Sbjct: 239 VQAALVDFVARSRGKG----FNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVF 294
Query: 293 HC 294
HC
Sbjct: 295 HC 296
>TAIR|locus:2134373 [details] [associations]
symbol:AT4G29620 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334
PROSITE:PS00903 EMBL:CP002687 GO:GO:0046872 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 EMBL:AL161575 EMBL:AL079344
TIGRFAMs:TIGR01355 EMBL:AF121877 EMBL:DQ446882 EMBL:AJ005811
IPI:IPI00530654 PIR:T09925 RefSeq:NP_194691.1 UniGene:At.79
HSSP:P13652 ProteinModelPortal:O65571 SMR:O65571
EnsemblPlants:AT4G29620.1 GeneID:829083 KEGG:ath:AT4G29620
TAIR:At4g29620 InParanoid:O65571 OMA:ARAPISK PhylomeDB:O65571
ProtClustDB:PLN02182 ArrayExpress:O65571 Genevestigator:O65571
Uniprot:O65571
Length = 337
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 141/307 (45%), Positives = 184/307 (59%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
+R +FV A EA G+T LP L++ A LAR PISK+ VGAVG SSGR++L
Sbjct: 26 DRFKFVFTANEAAL----EGVTDPIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVYL 81
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA--------PCGHCRQFLQE 113
G NV+FPGLPLH SIHAEQFL+TNL LN E L LAV+ + PCG+C QFL E
Sbjct: 82 GVNVDFPGLPLHHSIHAEQFLVTNLALNYEKDLCKLAVAISTDGLEFGTPCGNCLQFLME 141
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ N D+ I ++ + L LLP+ +L K P LLE N ++ + G
Sbjct: 142 MSNALDMKI-LSKPKHEAGSFSSLRLLLPN------VLPKGSPFLLEKRYNCLTLSGSAG 194
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I + LK AL AAN S +PY++ PSGVA++D +GN Y+G Y+ES A NPSLGP
Sbjct: 195 EICSLDC--SHLKRRALAAANNSFSPYTESPSGVALLDNDGNWYRGWYIESVASNPSLGP 252
Query: 234 VQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
VQAALV ++A + +IV A LVEK +A V QE A+++L I+P C+F VFH
Sbjct: 253 VQAALVDFVARSRGKM----FNKIVQAVLVEKNNASVSQERTAKIILDTIAPNCDFKVFH 308
Query: 294 CG--CKK 298
C C K
Sbjct: 309 CSVDCAK 315
>TAIR|locus:2134403 [details] [associations]
symbol:AT4G29640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334
PROSITE:PS00903 EMBL:CP002687 GO:GO:0046872 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 EMBL:AL161575 EMBL:AL079344
eggNOG:COG0295 TIGRFAMs:TIGR01355 EMBL:AF121877 HSSP:P13652
IPI:IPI00537315 PIR:T09927 RefSeq:NP_194693.1 UniGene:At.54549
ProteinModelPortal:Q9S7L8 SMR:Q9S7L8 PaxDb:Q9S7L8 PRIDE:Q9S7L8
EnsemblPlants:AT4G29640.1 GeneID:829085 KEGG:ath:AT4G29640
TAIR:At4g29640 InParanoid:Q9S7L8 OMA:KIAAPNC PhylomeDB:Q9S7L8
ProtClustDB:CLSN2915818 ArrayExpress:Q9S7L8 Genevestigator:Q9S7L8
Uniprot:Q9S7L8
Length = 346
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/300 (45%), Positives = 176/300 (58%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+FV A +A S G+T + LP L++ A+ L + P SK VGAVG SSGR +LG N
Sbjct: 6 KFVFTAEQAAS----EGVTDHKKLPKLIRKARNLVKAP-SK--VGAVGRASSGRFYLGVN 58
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTS 118
VEF GL H SIHAEQFLI NL LN+EP+L HLAVS PC C +FL+E+ N
Sbjct: 59 VEFKGLLPHFSIHAEQFLIANLALNSEPKLTHLAVSDNGTVFQDPCYDCTRFLKEINNAH 118
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF---NLCNGQI 175
I I I + + + + L +PD FG +L + LLL N ++ + G I
Sbjct: 119 QIEILIKNAHGRDGSFKSLESHMPDEFGSESILSAEPSLLLMERDNCLALIDEDSAAGGI 178
Query: 176 PETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQ 235
+ LK AL+AANKS+APY KCPSGVA+ CEG +Y G Y+E+ SLGPVQ
Sbjct: 179 SSNADLCSFLKLEALKAANKSYAPYRKCPSGVALF-CEGEVYAGWYIETVDRTISLGPVQ 237
Query: 236 AALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHC 294
AALV ++A +++I A LVEK+DA V QE AR LL+ I+ P C+F VFHC
Sbjct: 238 AALVDFIARGEGKG----FDKITGAVLVEKKDAKVGQEDTARKLLEKIAAPNCDFKVFHC 293
>TAIR|locus:2134413 [details] [associations]
symbol:AT4G29570 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334
PROSITE:PS00903 EMBL:CP002687 GO:GO:0046872 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 EMBL:AL161575 EMBL:AL079344
TIGRFAMs:TIGR01355 EMBL:AF121877 HSSP:P13652 HOGENOM:HOG000218616
IPI:IPI00520909 PIR:T09920 RefSeq:NP_194686.1 UniGene:At.31907
ProteinModelPortal:Q9XEX4 SMR:Q9XEX4 PRIDE:Q9XEX4
EnsemblPlants:AT4G29570.1 GeneID:829078 KEGG:ath:AT4G29570
TAIR:At4g29570 InParanoid:Q9XEX4 OMA:MESVAHN PhylomeDB:Q9XEX4
ProtClustDB:CLSN2915815 ArrayExpress:Q9XEX4 Genevestigator:Q9XEX4
Uniprot:Q9XEX4
Length = 293
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 130/304 (42%), Positives = 167/304 (54%)
Query: 1 MERP-RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRI 59
M +P RF++ E ES G Q L L+ A R IS V AVG GSSGR
Sbjct: 1 MAQPMRFMLNHIETESY----GAFTPQNLSPLINRAIPHTRAQISGSPVVAVGRGSSGRT 56
Query: 60 FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQE 113
F G NVE PGLPL SIHAEQFL+ NL L+ E +L+ +A+S PCGHC Q L +
Sbjct: 57 FFGVNVELPGLPLDHSIHAEQFLLANLALHFEQKLECIAISTNGYYFQEPCGHCCQLLHK 116
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF--NLC 171
+R+ SD I +T+ + Y LS LP + +VP LLE + N + +
Sbjct: 117 IRDMSDTKILLTNPTGQKGTYMNLSTFLPQGL----ISQANVPRLLERNFNCIELINHSL 172
Query: 172 NGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
I L AL+AA S+AP SKCPSGVA++D G +Y G YMES A+N SL
Sbjct: 173 YMDICSYSEHCNHLNCRALKAATISYAPDSKCPSGVALIDHRGKVYSGGYMESVAHNTSL 232
Query: 232 GPVQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFN 290
GPVQAALV ++A ++ IV A LVEK+ V+ QE AR++L+ I+ P C F
Sbjct: 233 GPVQAALVDFVA----NGDGQEFKNIVEAVLVEKKCGVLSQEATARMILEKIADPDCIFR 288
Query: 291 VFHC 294
V HC
Sbjct: 289 VLHC 292
>TAIR|locus:2134418 [details] [associations]
symbol:AT4G29650 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008655 "pyrimidine-containing compound salvage"
evidence=ISS] [GO:0009972 "cytidine deamination" evidence=IEA]
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016193
Pfam:PF08211 PIRSF:PIRSF006334 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 EMBL:AL161575 EMBL:AL079344 eggNOG:COG0295
HSSP:P19079 EMBL:AF121877 EMBL:DQ056663 IPI:IPI00526080 PIR:T09928
RefSeq:NP_194694.1 UniGene:At.54550 ProteinModelPortal:Q9S7S2
SMR:Q9S7S2 EnsemblPlants:AT4G29650.1 GeneID:829086
KEGG:ath:AT4G29650 TAIR:At4g29650 HOGENOM:HOG000218616
InParanoid:Q9S7S2 OMA:CIESAAY PhylomeDB:Q9S7S2
ProtClustDB:CLSN2915819 ArrayExpress:Q9S7S2 Genevestigator:Q9S7S2
Uniprot:Q9S7S2
Length = 251
Score = 316 (116.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 78/166 (46%), Positives = 99/166 (59%)
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE--RLKYA 188
E++ H L+P RF ++DVPLLL N ++ + NP+ LK
Sbjct: 88 EQELHAC--LIPSRFYLESF-EEDVPLLLVPQNNRLAHSDPFSAAEICSNPEHCSHLKCR 144
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAXXXX 248
AL AANKS+A YSKCPSGVA++ CEG +Y G +ESAAYN SLGPVQAALV ++A
Sbjct: 145 ALTAANKSNAQYSKCPSGVALI-CEGEVYGGWCIESAAYNLSLGPVQAALVDFMARGEGK 203
Query: 249 XXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
+E I A LVE DA V QE AR+LL+ I+P C F+VF C
Sbjct: 204 G----FEMITGAVLVEMNDAKVSQEATARILLKTIAPGCNFSVFRC 245
Score = 181 (68.8 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 45/90 (50%), Positives = 53/90 (58%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+F++ EA S G++ L L + A LAR PIS +GL SS RIFLG N
Sbjct: 6 KFILTREEAAS----KGVSRPSDLVKLEEEAMILARAPISGVQDAVLGLASSDRIFLGVN 61
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
VEF GLPLH SI AEQFL+ NL LN E L
Sbjct: 62 VEFEGLPLHHSISAEQFLVANLALNFEQEL 91
>TAIR|locus:2134388 [details] [associations]
symbol:AT4G29630 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334
PROSITE:PS00903 EMBL:CP002687 GO:GO:0046872 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 EMBL:AL161575 EMBL:AL079344
eggNOG:COG0295 TIGRFAMs:TIGR01355 EMBL:AF121877 HSSP:P13652
HOGENOM:HOG000218616 EMBL:DQ056662 IPI:IPI00540731 PIR:T09926
RefSeq:NP_194692.1 UniGene:At.54548 ProteinModelPortal:Q9S847
SMR:Q9S847 STRING:Q9S847 EnsemblPlants:AT4G29630.1 GeneID:829084
KEGG:ath:AT4G29630 TAIR:At4g29630 InParanoid:Q9S847
PhylomeDB:Q9S847 ArrayExpress:Q9S847 Genevestigator:Q9S847
Uniprot:Q9S847
Length = 223
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 110/223 (49%), Positives = 136/223 (60%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+FV A EAES G+T LP L+ A +LA PISK+ VGAVG SGRI+LG N
Sbjct: 7 KFVFTAKEAES----EGVTEPMRLPNLIGKAMSLALAPISKYKVGAVGRARSGRIYLGVN 62
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQELRN 116
VE PGLPLH SIHAEQFL+TNL LN+E L LAV+ APCG+CRQFL E+
Sbjct: 63 VELPGLPLHHSIHAEQFLVTNLALNSEKGLHLLAVTISTDGNDFGAPCGNCRQFLMEISK 122
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+I I + S E + L LLPDRF P+D+L K PLLLE N +S + +I
Sbjct: 123 ALNIKILLKSKYEAEGSFKSLRLLLPDRFSPDDVLPKGSPLLLEKRHNCLSLSGSAEEIC 182
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
++ LK AL AAN S +PY+ PSGVA+ D +GN Y+G
Sbjct: 183 SSDC--SHLKCKALAAANNSFSPYTNSPSGVALQDDDGNWYRG 223
>UNIPROTKB|Q9KSM5 [details] [associations]
symbol:cdd "Cytidine deaminase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004126 "cytidine
deaminase activity" evidence=ISS] [GO:0008655
"pyrimidine-containing compound salvage" evidence=ISS]
HAMAP:MF_01558 InterPro:IPR002125 InterPro:IPR006263
InterPro:IPR013171 InterPro:IPR016192 InterPro:IPR016193
InterPro:IPR020797 Pfam:PF00383 Pfam:PF08211 PIRSF:PIRSF006334
PROSITE:PS00903 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 eggNOG:COG0295 KO:K01489 GO:GO:0008655 OMA:NRSHAPY
ProtClustDB:PRK09027 PANTHER:PTHR11644:SF12 TIGRFAMs:TIGR01355
PIR:G82226 RefSeq:NP_230876.1 PDB:4EG2 PDBsum:4EG2
ProteinModelPortal:Q9KSM5 DNASU:2614668 GeneID:2614668
KEGG:vch:VC1231 PATRIC:20081548 Uniprot:Q9KSM5
Length = 295
Score = 244 (91.0 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 53/141 (37%), Positives = 79/141 (56%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G
Sbjct: 35 AEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTG 94
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 95 AQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP---- 150
Query: 130 NERKYHPLSHLLPDRFGPNDL 150
+R L LP+ FGP DL
Sbjct: 151 -KRAAKTLQEYLPESFGPADL 170
Score = 171 (65.3 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 55/156 (35%), Positives = 78/156 (50%)
Query: 131 ERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAA 189
+R L LP+ FGP DL +D +G+ + +G+ T + E L A
Sbjct: 151 KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEELIQQA 196
Query: 190 LEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAXXXXX 249
L A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL +
Sbjct: 197 LRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGES-- 254
Query: 250 XXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285
+E I AAALVE + + L+VI+P
Sbjct: 255 ----FEDIEAAALVESATGKISHLADTQATLEVINP 286
>TIGR_CMR|VC_1231 [details] [associations]
symbol:VC_1231 "cytidine deaminase" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004126 "cytidine deaminase
activity" evidence=ISS] [GO:0008655 "pyrimidine-containing compound
salvage" evidence=ISS] HAMAP:MF_01558 InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 InterPro:IPR020797 Pfam:PF00383 Pfam:PF08211
PIRSF:PIRSF006334 PROSITE:PS00903 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 eggNOG:COG0295 KO:K01489 GO:GO:0008655 OMA:NRSHAPY
ProtClustDB:PRK09027 PANTHER:PTHR11644:SF12 TIGRFAMs:TIGR01355
PIR:G82226 RefSeq:NP_230876.1 PDB:4EG2 PDBsum:4EG2
ProteinModelPortal:Q9KSM5 DNASU:2614668 GeneID:2614668
KEGG:vch:VC1231 PATRIC:20081548 Uniprot:Q9KSM5
Length = 295
Score = 244 (91.0 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 53/141 (37%), Positives = 79/141 (56%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G
Sbjct: 35 AEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTG 94
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 95 AQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP---- 150
Query: 130 NERKYHPLSHLLPDRFGPNDL 150
+R L LP+ FGP DL
Sbjct: 151 -KRAAKTLQEYLPESFGPADL 170
Score = 171 (65.3 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 55/156 (35%), Positives = 78/156 (50%)
Query: 131 ERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAA 189
+R L LP+ FGP DL +D +G+ + +G+ T + E L A
Sbjct: 151 KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEELIQQA 196
Query: 190 LEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAXXXXX 249
L A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL +
Sbjct: 197 LRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGES-- 254
Query: 250 XXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285
+E I AAALVE + + L+VI+P
Sbjct: 255 ----FEDIEAAALVESATGKISHLADTQATLEVINP 286
>TAIR|locus:2134428 [details] [associations]
symbol:AT4G29580 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016193
Pfam:PF08211 EMBL:CP002687 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 TIGRFAMs:TIGR01355 IPI:IPI00938653
RefSeq:NP_001154274.1 UniGene:At.54545 ProteinModelPortal:F4JNN8
SMR:F4JNN8 PRIDE:F4JNN8 EnsemblPlants:AT4G29580.2 GeneID:829079
KEGG:ath:AT4G29580 OMA:NGGGHEF ArrayExpress:F4JNN8 Uniprot:F4JNN8
Length = 445
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 124/302 (41%), Positives = 159/302 (52%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
AA + A+ SG + L L+ A LA+ S+ + AVG GSSGR FLG NVE PG
Sbjct: 9 AALTPTEAESSGPFEPETLLPLINRALPLAQALPSQSPLVAVGRGSSGRTFLGVNVELPG 68
Query: 70 L-PLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINI 122
L PLH SIHA QFL+ +L LN E L LA S+ PC HC Q LQE+RN S +
Sbjct: 69 LSPLH-SIHAGQFLVVHLALNNERTLNCLAFSSNGSYFDPPCPHCCQLLQEIRNASSTKL 127
Query: 123 CITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP------LLLETHQNGMSFNLCN-GQI 175
IT S +R LS LP ++ L +VP LL E NG++ L N I
Sbjct: 128 LITD-PSRQRDMS-LSTYLPQKYLS---LYNEVPKYFFARLLDENRNNGLT--LINPNPI 180
Query: 176 PETENPK--ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+ + + L AL+AAN+S+APYSK PSGVA+MD +G +Y G +ES A NP LG
Sbjct: 181 RDCLDSEICNHLSCRALKAANRSYAPYSKSPSGVALMDFQGRVYSGWSIESVA-NPILGA 239
Query: 234 VQAALVAYLAAXXXXXXXXXYERIVAAALVEKEDAVVRQEHAARLLLQVISP-KCEFNVF 292
QAALV ++ + IV LVEK DA + AR +L ++ V
Sbjct: 240 AQAALVDFMT----NGGGHEFNNIVRGFLVEKRDAKLSHLATAREILNKVAHFSFILRVL 295
Query: 293 HC 294
HC
Sbjct: 296 HC 297
>TIGR_CMR|SO_2791 [details] [associations]
symbol:SO_2791 "cytidine deaminase" species:211586
"Shewanella oneidensis MR-1" [GO:0004126 "cytidine deaminase
activity" evidence=ISS] [GO:0008655 "pyrimidine-containing compound
salvage" evidence=ISS] HAMAP:MF_01558 InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 InterPro:IPR020797 Pfam:PF00383 Pfam:PF08211
PIRSF:PIRSF006334 PROSITE:PS00903 GO:GO:0046872 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0295 KO:K01489
HOGENOM:HOG000218617 OMA:NRSHAPY ProtClustDB:PRK09027
PANTHER:PTHR11644:SF12 RefSeq:NP_718369.1 ProteinModelPortal:Q8EDG1
GeneID:1170491 KEGG:son:SO_2791 PATRIC:23525217 Uniprot:Q8EDG1
Length = 296
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 64/153 (41%), Positives = 95/153 (62%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQHLAELVKSSNMTESEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL + I I + S
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVDGGQIKIHLPSQ 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLE 160
+S H LS+ LP FGP DL + PLL++
Sbjct: 152 DS-----HLLSYYLPYAFGPKDL-NVQSPLLVK 178
Score = 133 (51.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 38/104 (36%), Positives = 57/104 (54%)
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAAN 194
H LS+ LP FGP DL + PLL++ F L ++ +P + AL+ A
Sbjct: 154 HLLSYYLPYAFGPKDL-NVQSPLLVKQETE---FAL------DSSDP---MVIEALDHAG 200
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 201 LSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPMQMAL 244
>UNIPROTKB|P0ABF6 [details] [associations]
symbol:cdd species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IEA;IDA] [GO:0001884
"pyrimidine nucleoside binding" evidence=IDA] [GO:0004126 "cytidine
deaminase activity" evidence=IEA;IDA] [GO:0015949
"nucleobase-containing small molecule interconversion"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047844 "deoxycytidine deaminase activity" evidence=IDA]
[GO:0006217 "deoxycytidine catabolic process" evidence=IDA]
[GO:0009972 "cytidine deamination" evidence=IEA;IMP] [GO:0005829
"cytosol" evidence=IDA] HAMAP:MF_01558 InterPro:IPR002125
InterPro:IPR006263 InterPro:IPR013171 InterPro:IPR016192
InterPro:IPR016193 InterPro:IPR020797 Pfam:PF00383 Pfam:PF08211
PIRSF:PIRSF006334 PROSITE:PS00903 GO:GO:0005829 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927
GO:GO:0015949 EMBL:U00007 eggNOG:COG0295 KO:K01489 EMBL:M60916
EMBL:X63144 EMBL:X16419 EMBL:Z47804 PIR:F64982 RefSeq:NP_416648.1
RefSeq:YP_490382.1 PDB:1AF2 PDB:1ALN PDB:1CTT PDB:1CTU PDBsum:1AF2
PDBsum:1ALN PDBsum:1CTT PDBsum:1CTU ProteinModelPortal:P0ABF6
SMR:P0ABF6 DIP:DIP-36169N IntAct:P0ABF6 MINT:MINT-1283574
SWISS-2DPAGE:P0ABF6 PRIDE:P0ABF6 EnsemblBacteria:EBESCT00000003860
EnsemblBacteria:EBESCT00000015250 GeneID:12934044 GeneID:946663
KEGG:ecj:Y75_p2105 KEGG:eco:b2143 PATRIC:32119629 EchoBASE:EB0135
EcoGene:EG10137 HOGENOM:HOG000218617 OMA:NRSHAPY
ProtClustDB:PRK09027 BioCyc:EcoCyc:CYTIDEAM-MONOMER
BioCyc:ECOL316407:JW2131-MONOMER BioCyc:MetaCyc:CYTIDEAM-MONOMER
EvolutionaryTrace:P0ABF6 Genevestigator:P0ABF6 GO:GO:0001884
PANTHER:PTHR11644:SF12 TIGRFAMs:TIGR01355 Uniprot:P0ABF6
Length = 294
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 59/159 (37%), Positives = 86/159 (54%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ + S+ +GL L L+ A AR P+S F+VGA+ G SG + G N+E
Sbjct: 32 LLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L+ E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNG 165
R+ H L LPD FGP DL K LL++ +G
Sbjct: 152 -----REAHALRDYLPDAFGPKDLEIKT--LLMDEQDHG 183
Score = 210 (79.0 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 60/153 (39%), Positives = 80/153 (52%)
Query: 132 RKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALE 191
R+ H L LPD FGP DL K LL++ +G + G + L AA+
Sbjct: 152 REAHALRDYLPDAFGPKDLEIKT--LLMDEQDHGYALT---G---------DALSQAAIA 197
Query: 192 AANKSHAPYSKCPSGVAIMDC-EGNIYKGSYMESAAYNPSLGPVQAALVAYLAAXXXXXX 250
AAN+SH PYSK PSGVA+ +C +G I+ GSY E+AA+NP+L P+Q AL+
Sbjct: 198 AANRSHMPYSKSPSGVAL-ECKDGRIFSGSYAENAAFNPTLPPLQGALILL------NLK 250
Query: 251 XXXYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 251 GYDYPDIQRAVLAEKADAPLIQWDATSATLKAL 283
>TIGR_CMR|CPS_1969 [details] [associations]
symbol:CPS_1969 "cytidine deaminase" species:167879
"Colwellia psychrerythraea 34H" [GO:0004126 "cytidine deaminase
activity" evidence=ISS] [GO:0008655 "pyrimidine-containing compound
salvage" evidence=ISS] InterPro:IPR002125 InterPro:IPR006262
InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0295 KO:K01489 TIGRFAMs:TIGR01354 HOGENOM:HOG000014707
RefSeq:YP_268699.1 ProteinModelPortal:Q483R7 STRING:Q483R7
GeneID:3520170 KEGG:cps:CPS_1969 PATRIC:21467069 OMA:VAACICT
BioCyc:CPSY167879:GI48-2039-MONOMER Uniprot:Q483R7
Length = 139
Score = 160 (61.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 45/131 (34%), Positives = 64/131 (48%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + K A A P SKFHVGA L + G I G NVE L +I AE+ I++ +
Sbjct: 12 LLSAAKEAYQRAYAPYSKFHVGASALTTDGDIVNGCNVENASYGL--TICAERNCISHAV 69
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ + + + + PCG CRQ + E S + + + + N+RK + LL
Sbjct: 70 VQGKQMFKFIMIYTEQDKLTPPCGACRQVIAEFFEQSALVVAVN--HKNDRKIWTVQQLL 127
Query: 142 PDRFGPNDLLD 152
PD F P DLLD
Sbjct: 128 PDAFTPKDLLD 138
>ASPGD|ASPL0000049793 [details] [associations]
symbol:AN11146 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004126 "cytidine deaminase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009972 "cytidine deamination" evidence=IEA] [GO:0006216
"cytidine catabolic process" evidence=IEA] [GO:0008655
"pyrimidine-containing compound salvage" evidence=IEA] [GO:0006217
"deoxycytidine catabolic process" evidence=IEA] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016193 Pfam:PF00383 GO:GO:0005634
GO:GO:0005737 EMBL:BN001307 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 GO:GO:0006217 GO:GO:0008655 TIGRFAMs:TIGR01354
HOGENOM:HOG000014707 EnsemblFungi:CADANIAT00007991 OMA:DLLIDHP
Uniprot:C8VLU1
Length = 138
Score = 148 (57.2 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 43/131 (32%), Positives = 61/131 (46%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++LL + +A+ A P SKF VGA L SG F G NVE P+ AE+
Sbjct: 9 IELLASKANAAKEAAYCPYSKFRVGAALLTQSGEFFTGANVENASYPVGTC--AERVAFG 66
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
++ R + +AV+ A+PCG CRQF+ E T + + N +
Sbjct: 67 TAVVAGHRRFKAIAVATDIKPPASPCGMCRQFMSEF-TTRSFPVYMYDKEMN-CSIISMG 124
Query: 139 HLLPDRFGPND 149
LLP+ FGP D
Sbjct: 125 ELLPNSFGPED 135
>UNIPROTKB|E1C6V1 [details] [associations]
symbol:CDA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004126 "cytidine deaminase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 TIGRFAMs:TIGR01354 OMA:KLVKMAL
GeneTree:ENSGT00390000000911 EMBL:AADN02040665 IPI:IPI00684094
Ensembl:ENSGALT00000011937 Uniprot:E1C6V1
Length = 169
Score = 137 (53.3 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 46/140 (32%), Positives = 65/140 (46%)
Query: 17 AQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSI 76
A G LQLL + A+ A P S+F VGA + + G IF G NVE L +
Sbjct: 32 AGMEGSECLQLLLRRCREAKDCAYCPYSRFPVGAAVVTAGGEIFSGCNVENACYSL--GV 89
Query: 77 HAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSN 130
AE+ I I R + +A+++ PCG CRQ ++E +D ++ +T +
Sbjct: 90 CAERIAIQKAISEGHTRFRAMAIASDMSDFITPCGACRQVMREFG--TDWDLYLTKPDGT 147
Query: 131 ERKYHPLSHLLPDRFGPNDL 150
L LLP FGP DL
Sbjct: 148 YI-VKTLQELLPLSFGPEDL 166
>UNIPROTKB|E1BNY1 [details] [associations]
symbol:CDA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051289 "protein homotetramerization" evidence=IEA]
[GO:0045980 "negative regulation of nucleotide metabolic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004126 "cytidine deaminase activity" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0030308 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0051289 GO:GO:0001882
GO:GO:0045980 KO:K01489 TIGRFAMs:TIGR01354 CTD:978 OMA:KLVKMAL
GeneTree:ENSGT00390000000911 EMBL:DAAA02006491 IPI:IPI00710110
RefSeq:NP_001180039.1 UniGene:Bt.59621 Ensembl:ENSBTAT00000008074
GeneID:616377 KEGG:bta:616377 NextBio:20900106 Uniprot:E1BNY1
Length = 146
Score = 136 (52.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 43/133 (32%), Positives = 65/133 (48%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S+F VGA L GRIF G N+E PL S+ AE+ I
Sbjct: 15 VQRLLLSCQEAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--SVCAERTAIQ 72
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+++ +PCG CRQ ++E +D + +T ++ +
Sbjct: 73 KAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFG--TDWAVYMTKLDGTY-VVRTV 129
Query: 138 SHLLPDRFGPNDL 150
LLP+ FGP DL
Sbjct: 130 RELLPESFGPEDL 142
>TIGR_CMR|CHY_1553 [details] [associations]
symbol:CHY_1553 "cytidine deaminase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004126 "cytidine
deaminase activity" evidence=ISS] [GO:0008655
"pyrimidine-containing compound salvage" evidence=ISS]
InterPro:IPR002125 InterPro:IPR006262 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 eggNOG:COG0295 KO:K01489 TIGRFAMs:TIGR01354
HOGENOM:HOG000014707 RefSeq:YP_360385.1 ProteinModelPortal:Q3ABU9
SMR:Q3ABU9 STRING:Q3ABU9 GeneID:3726457 KEGG:chy:CHY_1553
PATRIC:21276233 OMA:SYPVTLC BioCyc:CHYD246194:GJCN-1552-MONOMER
Uniprot:Q3ABU9
Length = 132
Score = 133 (51.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 42/125 (33%), Positives = 63/125 (50%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
LL K A+ A P S F VGA LG SG+I+ G N+E L +I AE+ IT
Sbjct: 7 LLYEKAKEARENAYVPYSGFKVGAAVLGESGKIYQGANIENASYGL--TICAERVAITKA 64
Query: 87 ILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
I E +L+ + V +PCG CRQF+ E + + I + ++ + +++ L +
Sbjct: 65 ISEGEKKLKAILVVGDTPGPISPCGACRQFMAEFKIET---IYLANLAGDIKEF-TLEQI 120
Query: 141 LPDRF 145
LP F
Sbjct: 121 LPYYF 125
>WB|WBGene00000392 [details] [associations]
symbol:cdd-2 species:6239 "Caenorhabditis elegans"
[GO:0004126 "cytidine deaminase activity" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0009972 "cytidine deamination"
evidence=IEA] [GO:0009790 "embryo development" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IDA] [GO:0005623 "cell"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0047844
"deoxycytidine deaminase activity" evidence=IDA] [GO:0006217
"deoxycytidine catabolic process" evidence=IDA] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0047844 GO:GO:0009790
GO:GO:0005623 HSSP:P32320 eggNOG:COG0295 KO:K01489 GO:GO:0006217
TIGRFAMs:TIGR01354 HOGENOM:HOG000014707
GeneTree:ENSGT00390000000911 GO:GO:0009451 EMBL:FO081280 PIR:T29638
RefSeq:NP_501221.1 ProteinModelPortal:Q20628 SMR:Q20628
DIP:DIP-26897N IntAct:Q20628 MINT:MINT-1076223 STRING:Q20628
PaxDb:Q20628 EnsemblMetazoa:F49E8.4 GeneID:186044
KEGG:cel:CELE_F49E8.4 UCSC:F49E8.4 CTD:186044 WormBase:F49E8.4
InParanoid:Q20628 OMA:KANIRNE NextBio:930436 Uniprot:Q20628
Length = 166
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 42/126 (33%), Positives = 58/126 (46%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG I G NVE +I AE+ I + +
Sbjct: 18 LARAAMKRAHCPYSKFPVGAALLTESGEIVQGCNVE--NASYGGTICAERSAIVSAVSQG 75
Query: 91 EPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + +AV A+PCG CRQFL E D + + + ++N+ LLP
Sbjct: 76 YTKFRAIAVVTELSEPASPCGLCRQFLVEF---GDYKVVVGTASNNKILITSTRALLPFA 132
Query: 145 FGPNDL 150
F P L
Sbjct: 133 FTPESL 138
>UNIPROTKB|Q20628 [details] [associations]
symbol:cdd-2 "Protein CDD-2" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002125 InterPro:IPR006262 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0047844
GO:GO:0009790 GO:GO:0005623 HSSP:P32320 eggNOG:COG0295 KO:K01489
GO:GO:0006217 TIGRFAMs:TIGR01354 HOGENOM:HOG000014707
GeneTree:ENSGT00390000000911 GO:GO:0009451 EMBL:FO081280 PIR:T29638
RefSeq:NP_501221.1 ProteinModelPortal:Q20628 SMR:Q20628
DIP:DIP-26897N IntAct:Q20628 MINT:MINT-1076223 STRING:Q20628
PaxDb:Q20628 EnsemblMetazoa:F49E8.4 GeneID:186044
KEGG:cel:CELE_F49E8.4 UCSC:F49E8.4 CTD:186044 WormBase:F49E8.4
InParanoid:Q20628 OMA:KANIRNE NextBio:930436 Uniprot:Q20628
Length = 166
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 42/126 (33%), Positives = 58/126 (46%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG I G NVE +I AE+ I + +
Sbjct: 18 LARAAMKRAHCPYSKFPVGAALLTESGEIVQGCNVE--NASYGGTICAERSAIVSAVSQG 75
Query: 91 EPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + +AV A+PCG CRQFL E D + + + ++N+ LLP
Sbjct: 76 YTKFRAIAVVTELSEPASPCGLCRQFLVEF---GDYKVVVGTASNNKILITSTRALLPFA 132
Query: 145 FGPNDL 150
F P L
Sbjct: 133 FTPESL 138
>MGI|MGI:1919519 [details] [associations]
symbol:Cda "cytidine deaminase" species:10090 "Mus musculus"
[GO:0001882 "nucleoside binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004126 "cytidine deaminase
activity" evidence=ISO] [GO:0005829 "cytosol" evidence=ISO]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=ISO] [GO:0009972 "cytidine deamination"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0045980
"negative regulation of nucleotide metabolic process" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=ISO] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 MGI:MGI:1919519 GO:GO:0005829
GO:GO:0042803 GO:GO:0030308 GO:GO:0046872 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0051289 GO:GO:0001882
GO:GO:0045980 GO:GO:0046898 eggNOG:COG0295 KO:K01489
TIGRFAMs:TIGR01354 CTD:978 HOGENOM:HOG000014707 HOVERGEN:HBG005294
OMA:KLVKMAL OrthoDB:EOG4WSWBW GO:GO:0071217 EMBL:AK008793
EMBL:BC050114 IPI:IPI00110866 RefSeq:NP_082452.1 UniGene:Mm.46182
PDB:1ZAB PDB:2FR5 PDB:2FR6 PDBsum:1ZAB PDBsum:2FR5 PDBsum:2FR6
ProteinModelPortal:P56389 SMR:P56389 MINT:MINT-218728 STRING:P56389
PhosphoSite:P56389 PaxDb:P56389 PRIDE:P56389
Ensembl:ENSMUST00000030535 GeneID:72269 KEGG:mmu:72269
GeneTree:ENSGT00390000000911 InParanoid:P56389 BindingDB:P56389
ChEMBL:CHEMBL2110 EvolutionaryTrace:P56389 NextBio:335863
Bgee:P56389 CleanEx:MM_CDA Genevestigator:P56389
GermOnline:ENSMUSG00000028755 Uniprot:P56389
Length = 146
Score = 124 (48.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 41/125 (32%), Positives = 59/125 (47%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P S+F VGA L GRIF G N+E PL + AE+ I I
Sbjct: 23 REAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--GVCAERTAIQKAISEGYK 80
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ +A+S+ +PCG CRQ ++E +D + +T + + LLP F
Sbjct: 81 DFRAIAISSDLQEEFISPCGACRQVMREFG--TDWAVYMTKPDGTF-VVRTVQELLPASF 137
Query: 146 GPNDL 150
GP DL
Sbjct: 138 GPEDL 142
>UNIPROTKB|I3LAH9 [details] [associations]
symbol:CDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051289 "protein homotetramerization" evidence=IEA]
[GO:0045980 "negative regulation of nucleotide metabolic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004126 "cytidine deaminase activity" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0030308 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0051289 GO:GO:0001882
GO:GO:0045980 TIGRFAMs:TIGR01354 OMA:KLVKMAL
GeneTree:ENSGT00390000000911 EMBL:FP565731
Ensembl:ENSSSCT00000026673 Uniprot:I3LAH9
Length = 146
Score = 122 (48.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 43/134 (32%), Positives = 64/134 (47%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
V QLL + + A+ A P S+F VGA L GRIF G N+E PL + AE+ I
Sbjct: 15 VQQLLFSC-REAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--GVCAERTAI 71
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I + +A+++ +PCG CRQ ++E ++ + +T +
Sbjct: 72 QKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFG--TNWAVYMTKPDGTY-VVRT 128
Query: 137 LSHLLPDRFGPNDL 150
+ LLP FGP DL
Sbjct: 129 IQELLPASFGPEDL 142
>ZFIN|ZDB-GENE-040426-1911 [details] [associations]
symbol:cda "cytidine deaminase" species:7955
"Danio rerio" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004126 "cytidine deaminase activity"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 ZFIN:ZDB-GENE-040426-1911
GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927 eggNOG:COG0295
KO:K01489 TIGRFAMs:TIGR01354 CTD:978 HOGENOM:HOG000014707
HOVERGEN:HBG005294 OrthoDB:EOG4WSWBW GeneTree:ENSGT00390000000911
OMA:KANIRNE HSSP:P13652 EMBL:CR558302 EMBL:BC065476 IPI:IPI00481646
RefSeq:NP_991242.1 UniGene:Dr.29769 SMR:Q6P0R4 STRING:Q6P0R4
Ensembl:ENSDART00000055694 GeneID:402979 KEGG:dre:402979
InParanoid:Q6P0R4 NextBio:20816786 Uniprot:Q6P0R4
Length = 159
Score = 122 (48.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 39/125 (31%), Positives = 59/125 (47%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P SKF VGA L G +F G NVE L I AE+ I+ +
Sbjct: 29 QEAKKFAYCPYSKFRVGAALLTHDGTVFTGCNVENACFNL--GICAERVAISKAVSEGYR 86
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ +A+++ +PCG CRQF++E + ++ + + E + LLP F
Sbjct: 87 DFKAIAIASDMCENFISPCGGCRQFMREFGSNWEVYLSKPDGSYVEMT---VEELLPASF 143
Query: 146 GPNDL 150
GP DL
Sbjct: 144 GPEDL 148
>TIGR_CMR|SPO_2930 [details] [associations]
symbol:SPO_2930 "cytidine deaminase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004126 "cytidine deaminase activity"
evidence=ISS] [GO:0008655 "pyrimidine-containing compound salvage"
evidence=ISS] InterPro:IPR002125 InterPro:IPR006262
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 KO:K01489 TIGRFAMs:TIGR01354 HOGENOM:HOG000014707
OMA:KLVKMAL RefSeq:YP_168138.1 ProteinModelPortal:Q5LPB8
GeneID:3194421 KEGG:sil:SPO2930 PATRIC:23379289
ProtClustDB:CLSK934000 Uniprot:Q5LPB8
Length = 130
Score = 120 (47.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 38/114 (33%), Positives = 54/114 (47%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S+F VGA G+SG ++ G NVE P + AE I ++ E RL +
Sbjct: 14 AHAPYSRFKVGAAIRGASGVVYAGCNVENIAYP--EGTCAEAGAIAAMVAAGETRLSEVY 71
Query: 99 VSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
V A PCG CRQ L E + D+ + + +++ E + LLP FG
Sbjct: 72 VVADSPAPVPPCGGCRQKLAEFGDP-DVVVTMANLDGVETAM-TIGQLLPGAFG 123
Score = 96 (38.9 bits), Expect = 0.00024, P = 0.00024
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
LK AAL +HAPYS+ G AI G +Y G +E+ AY A+ A +AA
Sbjct: 3 LKSAALTVRENAHAPYSRFKVGAAIRGASGVVYAGCNVENIAYPEGTCAEAGAIAAMVAA 62
>RGD|1311101 [details] [associations]
symbol:Cda "cytidine deaminase" species:10116 "Rattus
norvegicus" [GO:0001882 "nucleoside binding" evidence=ISO]
[GO:0004126 "cytidine deaminase activity" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISO] [GO:0009972 "cytidine deamination"
evidence=ISO;IDA] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0042802 "identical protein binding" evidence=ISO]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0045980 "negative regulation of nucleotide metabolic process"
evidence=ISO] [GO:0046898 "response to cycloheximide" evidence=IEP]
[GO:0051289 "protein homotetramerization" evidence=ISO] [GO:0071217
"cellular response to external biotic stimulus" evidence=IEP]
InterPro:IPR002125 InterPro:IPR006262 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 RGD:1311101
GO:GO:0005829 GO:GO:0030308 GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 GO:GO:0051289 GO:GO:0001882 GO:GO:0045980
GO:GO:0046898 KO:K01489 TIGRFAMs:TIGR01354 CTD:978 OMA:KLVKMAL
OrthoDB:EOG4WSWBW GO:GO:0071217 GeneTree:ENSGT00390000000911
EMBL:CH473968 IPI:IPI00359108 RefSeq:NP_001102158.1
RefSeq:XP_003750114.1 UniGene:Rn.6887 Ensembl:ENSRNOT00000021036
GeneID:100909857 GeneID:362638 KEGG:rno:100909857 KEGG:rno:362638
UCSC:RGD:1311101 NextBio:680707 Uniprot:D4AC20
Length = 146
Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/125 (32%), Positives = 59/125 (47%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P S+F VGA L GRIF G NVE PL + AE+ I I
Sbjct: 23 REAKKSAYCPYSRFPVGAALLTGDGRIFSGCNVENACYPL--GVCAERTAIQKAISEGYK 80
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ +A+++ +PCG CRQ ++E ++ + +T + + LLP F
Sbjct: 81 DFRAIAIASDLQEEFISPCGACRQVMREFG--TNWAVYMTKPDGTF-VVRTVQELLPASF 137
Query: 146 GPNDL 150
GP DL
Sbjct: 138 GPEDL 142
>POMBASE|SPAC1556.04c [details] [associations]
symbol:cdd1 "cytidine deaminase Ccd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0004126 "cytidine
deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006206 "pyrimidine nucleobase
metabolic process" evidence=NAS] [GO:0006216 "cytidine catabolic
process" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009972 "cytidine deamination" evidence=IEA] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 PomBase:SPAC1556.04c GO:GO:0005829
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0006206 GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927
EMBL:X98329 eggNOG:COG0295 KO:K01489 TIGRFAMs:TIGR01354
HOGENOM:HOG000014707 OMA:KLVKMAL PIR:T50083 RefSeq:NP_594321.1
ProteinModelPortal:Q09190 STRING:Q09190 EnsemblFungi:SPAC1556.04c.1
GeneID:2541551 KEGG:spo:SPAC1556.04c OrthoDB:EOG49CTJD
NextBio:20802647 Uniprot:Q09190
Length = 133
Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 38/125 (30%), Positives = 56/125 (44%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFL-GGNVEFPGLPLHQSIHAEQFLITNLILNA 90
VK + + P S F VGA + ++ G NVE I AE+ IT +
Sbjct: 13 VKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVE--NASYGNCICAERVAITKAVSMG 70
Query: 91 EPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ + V +A PCG CRQ ++E + DIN+ + + + LLPD F
Sbjct: 71 YTKFMAIGVMSAKGRVTPCGICRQVIREF--SKDINVYMFH-DDGGYDMKTIEELLPDSF 127
Query: 146 GPNDL 150
GP+DL
Sbjct: 128 GPDDL 132
>UNIPROTKB|P32320 [details] [associations]
symbol:CDA "Cytidine deaminase" species:9606 "Homo sapiens"
[GO:0005829 "cytosol" evidence=NAS;TAS] [GO:0008270 "zinc ion
binding" evidence=IDA;TAS] [GO:0051289 "protein
homotetramerization" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0001882 "nucleoside
binding" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IDA] [GO:0004126 "cytidine deaminase activity"
evidence=EXP;IDA] [GO:0045980 "negative regulation of nucleotide
metabolic process" evidence=IDA] [GO:0007166 "cell surface receptor
signaling pathway" evidence=NAS] [GO:0005576 "extracellular region"
evidence=TAS] [GO:0008655 "pyrimidine-containing compound salvage"
evidence=NAS] [GO:0009972 "cytidine deamination" evidence=IDA]
[GO:0019858 "cytosine metabolic process" evidence=TAS] [GO:0006206
"pyrimidine nucleobase metabolic process" evidence=TAS] [GO:0043097
"pyrimidine nucleoside salvage" evidence=TAS] [GO:0044281 "small
molecule metabolic process" evidence=TAS] [GO:0055086
"nucleobase-containing small molecule metabolic process"
evidence=TAS] Reactome:REACT_111217 InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 EMBL:S52873 GO:GO:0005829
GO:GO:0005576 GO:GO:0042803 GO:GO:0030308 GO:GO:0046872
GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0051289
GO:GO:0007166 GO:GO:0001882 DrugBank:DB00987 GO:GO:0045980
GO:GO:0046898 eggNOG:COG0295 KO:K01489 TIGRFAMs:TIGR01354
EMBL:L27943 EMBL:AF061658 EMBL:AF061655 EMBL:AF061656 EMBL:AF061657
EMBL:AJ000474 EMBL:AL391357 EMBL:BC054036 IPI:IPI00027983
PIR:I52710 RefSeq:NP_001776.1 UniGene:Hs.466910 PDB:1MQ0
PDBsum:1MQ0 ProteinModelPortal:P32320 SMR:P32320 STRING:P32320
PhosphoSite:P32320 DMDM:1705718 PaxDb:P32320 PeptideAtlas:P32320
PRIDE:P32320 DNASU:978 Ensembl:ENST00000375071 GeneID:978
KEGG:hsa:978 UCSC:uc001bdk.3 CTD:978 GeneCards:GC01P020915
HGNC:HGNC:1712 MIM:123920 neXtProt:NX_P32320 PharmGKB:PA98
HOGENOM:HOG000014707 HOVERGEN:HBG005294 InParanoid:P32320
OMA:KLVKMAL OrthoDB:EOG4WSWBW PhylomeDB:P32320 SABIO-RK:P32320
BindingDB:P32320 ChEMBL:CHEMBL4502 ChiTaRS:CDA DrugBank:DB00928
DrugBank:DB01101 DrugBank:DB00441 EvolutionaryTrace:P32320
GenomeRNAi:978 NextBio:4112 ArrayExpress:P32320 Bgee:P32320
CleanEx:HS_CDA Genevestigator:P32320 GermOnline:ENSG00000158825
GO:GO:0071217 GO:GO:0019858 GO:GO:0043097 Uniprot:P32320
Length = 146
Score = 115 (45.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 43/134 (32%), Positives = 62/134 (46%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
V QLL + A+ A P S F VGA L GRIF G N+E PL I AE+ I
Sbjct: 15 VQQLL-VCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPL--GICAERTAI 71
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + +A+++ +PCG CRQ ++E ++ + +T +
Sbjct: 72 QKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFG--TNWPVYMTKPDGTYIVM-T 128
Query: 137 LSHLLPDRFGPNDL 150
+ LLP FGP DL
Sbjct: 129 VQELLPSSFGPEDL 142
>DICTYBASE|DDB_G0288933 [details] [associations]
symbol:cda "cytidine deaminase" species:44689
"Dictyostelium discoideum" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0009972 "cytidine deamination" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0004126
"cytidine deaminase activity" evidence=IEA;ISS] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008655 "pyrimidine-containing compound salvage"
evidence=ISS] [GO:0006217 "deoxycytidine catabolic process"
evidence=ISS] [GO:0006216 "cytidine catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR002125 InterPro:IPR006262
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
dictyBase:DDB_G0288933 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0008270 EMBL:AAFI02000126 GenomeReviews:CM000154_GR
GO:GO:0004126 SUPFAM:SSF53927 RefSeq:XP_636497.1 HSSP:P32320
ProteinModelPortal:Q54I82 STRING:Q54I82 EnsemblProtists:DDB0230205
GeneID:8626880 KEGG:ddi:DDB_G0288933 eggNOG:COG0295 KO:K01489
OMA:CAERTAY ProtClustDB:CLSZ2429832 GO:GO:0006217 GO:GO:0008655
TIGRFAMs:TIGR01354 Uniprot:Q54I82
Length = 147
Score = 112 (44.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 40/129 (31%), Positives = 60/129 (46%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+++Q A P S F +GA L S G+IF G NVE L +I AE+ T +
Sbjct: 14 QNSQQYAHCPYSHFRIGAALLTSCGKIFTGVNVENSSYGL--TICAERTAYTKAVSEGYK 71
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH-LLPDR 144
+ + V++ PCG CRQF E + ++ +C+ S + +H LLP
Sbjct: 72 SFKGIVVASDLKDRFITPCGACRQFGVEFGDF-EV-VCVKPDRST---FKSSTHKLLPGL 126
Query: 145 FGPNDLLDK 153
F DL+ K
Sbjct: 127 FSQEDLIAK 135
>TIGR_CMR|BA_1895 [details] [associations]
symbol:BA_1895 "cytidine deaminase" species:198094
"Bacillus anthracis str. Ames" [GO:0004126 "cytidine deaminase
activity" evidence=ISS] [GO:0008655 "pyrimidine-containing compound
salvage" evidence=ISS] InterPro:IPR002125 InterPro:IPR006262
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 KO:K01489 TIGRFAMs:TIGR01354
HOGENOM:HOG000014707 ProtClustDB:PRK05578 HSSP:P19079
RefSeq:NP_844306.1 RefSeq:YP_018539.1 RefSeq:YP_028021.1
ProteinModelPortal:Q81RZ0 SMR:Q81RZ0 DNASU:1083735
EnsemblBacteria:EBBACT00000010581 EnsemblBacteria:EBBACT00000016777
EnsemblBacteria:EBBACT00000023501 GeneID:1083735 GeneID:2816918
GeneID:2851398 KEGG:ban:BA_1895 KEGG:bar:GBAA_1895 KEGG:bat:BAS1757
OMA:FRERTLN BioCyc:BANT260799:GJAJ-1826-MONOMER
BioCyc:BANT261594:GJ7F-1900-MONOMER Uniprot:Q81RZ0
Length = 131
Score = 112 (44.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA + G+I+ G N+E L AE+ I + E +L ++
Sbjct: 20 PYSKFPVGAALVTKEGKIYTGCNIENASYGLCNC--AERTAIFKAVSEGERDFSYLVITG 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+PCG CRQ + E + + + +T++ +E++ + LLP F +DL
Sbjct: 78 ETDGPISPCGACRQVIAEFCDPK-MPVLLTNVKGDEKEV-TVEQLLPGAFTNDDL 130
>UNIPROTKB|E2RBK6 [details] [associations]
symbol:CDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051289 "protein homotetramerization"
evidence=IEA] [GO:0045980 "negative regulation of nucleotide
metabolic process" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004126 "cytidine deaminase activity"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
InterPro:IPR002125 InterPro:IPR006262 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0030308
GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0051289
GO:GO:0001882 GO:GO:0045980 KO:K01489 TIGRFAMs:TIGR01354 CTD:978
GeneTree:ENSGT00390000000911 EMBL:AAEX03001794 EMBL:AAEX03001795
RefSeq:XP_544519.1 ProteinModelPortal:E2RBK6
Ensembl:ENSCAFT00000023893 GeneID:487393 KEGG:cfa:487393
OMA:VVVYTDT NextBio:20860991 Uniprot:E2RBK6
Length = 146
Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
++Q L + A+ A P S F VGA L GRIF G N+E PL + AE+ I
Sbjct: 14 LVQRLLLSCQEAKKSAYCPYSHFPVGAAILTQDGRIFSGCNIENVCYPL--GVCAERTAI 71
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQE 113
I + +A+S+ +PCG CRQF++E
Sbjct: 72 QKAISEGHREFRAIAISSDLQDDFISPCGACRQFMRE 108
>TIGR_CMR|BA_4525 [details] [associations]
symbol:BA_4525 "cytidine deaminase" species:198094
"Bacillus anthracis str. Ames" [GO:0004126 "cytidine deaminase
activity" evidence=ISS] [GO:0008655 "pyrimidine-containing compound
salvage" evidence=ISS] InterPro:IPR002125 InterPro:IPR006262
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008270 GO:GO:0004126
SUPFAM:SSF53927 KO:K01489 TIGRFAMs:TIGR01354 HOGENOM:HOG000014707
OMA:VAACICT RefSeq:NP_846748.1 RefSeq:YP_021171.1
RefSeq:YP_030448.1 PDB:2D30 PDBsum:2D30 ProteinModelPortal:Q81LT6
SMR:Q81LT6 IntAct:Q81LT6 DNASU:1088257
EnsemblBacteria:EBBACT00000009427 EnsemblBacteria:EBBACT00000017736
EnsemblBacteria:EBBACT00000021178 GeneID:1088257 GeneID:2819017
GeneID:2848214 KEGG:ban:BA_4525 KEGG:bar:GBAA_4525 KEGG:bat:BAS4200
ProtClustDB:PRK12411 BioCyc:BANT260799:GJAJ-4256-MONOMER
BioCyc:BANT261594:GJ7F-4401-MONOMER EvolutionaryTrace:Q81LT6
Uniprot:Q81LT6
Length = 132
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/131 (28%), Positives = 61/131 (46%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
QL+ ++ A+ A P SKF VGA L G+++ G NVE L AE+ +
Sbjct: 5 QLIQEAIE-ARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + +A+ A PCG CRQ + EL D + +++++ + ++ +
Sbjct: 62 AVSEGDKEFVAIAIVADTKRPVPPCGACRQVMVELCK-QDTKVYLSNLHGDVQET-TVGE 119
Query: 140 LLPDRFGPNDL 150
LLP F DL
Sbjct: 120 LLPGAFLAEDL 130
>ZFIN|ZDB-GENE-041114-88 [details] [associations]
symbol:zgc:103586 "zgc:103586" species:7955 "Danio
rerio" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004126
"cytidine deaminase activity" evidence=IEA] [GO:0009972 "cytidine
deamination" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR002125
InterPro:IPR006262 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 ZFIN:ZDB-GENE-041114-88 GO:GO:0008270
GO:GO:0004126 SUPFAM:SSF53927 eggNOG:COG0295 TIGRFAMs:TIGR01354
HOGENOM:HOG000014707 HOVERGEN:HBG005294 EMBL:BC085561
IPI:IPI00836056 RefSeq:NP_001007390.1 UniGene:Dr.25811
ProteinModelPortal:Q5U3F7 SMR:Q5U3F7 STRING:Q5U3F7 GeneID:492517
KEGG:dre:492517 InParanoid:Q5U3F7 OrthoDB:EOG48WC3G
NextBio:20865077 ArrayExpress:Q5U3F7 Uniprot:Q5U3F7
Length = 133
Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 43/136 (31%), Positives = 61/136 (44%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+ V +L+ ++ A+ +A P S F VGA L + G I G NVE L ++ AE+
Sbjct: 1 MAVAELVAKCLQ-AREMAYCPYSGFPVGAAILTTGGAIVTGCNVENASYGL--TVCAERT 57
Query: 82 LITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKY 134
I + R +AV+ PCG CRQ L E D+ + T + + RK
Sbjct: 58 AIQRAVAEGYRRFTAIAVTCDIKDSFVGPCGACRQVLMEFGTEWDVYL--TKPDGSYRKT 115
Query: 135 HPLSHLLPDRFGPNDL 150
L LLP F P L
Sbjct: 116 S-LRDLLPLAFTPAHL 130
>UNIPROTKB|O53367 [details] [associations]
symbol:cdd "Cytidine deaminase" species:1773 "Mycobacterium
tuberculosis" [GO:0004126 "cytidine deaminase activity"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0009972 "cytidine
deamination" evidence=IDA] [GO:0043100 "pyrimidine nucleobase
salvage" evidence=IDA] [GO:0046109 "uridine biosynthetic process"
evidence=IDA] [GO:0047844 "deoxycytidine deaminase activity"
evidence=IDA] [GO:0051289 "protein homotetramerization"
evidence=IPI] InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383
PROSITE:PS00903 GO:GO:0005886 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0004126 SUPFAM:SSF53927 GO:GO:0047844
GO:GO:0051289 EMBL:BX842582 KO:K01489 HOGENOM:HOG000014707
OMA:KLVKMAL PIR:B70843 RefSeq:NP_217832.1 RefSeq:NP_337944.1
RefSeq:YP_006516794.1 PDB:3IJF PDBsum:3IJF
ProteinModelPortal:O53367 SMR:O53367 PRIDE:O53367
EnsemblBacteria:EBMYCT00000002309 EnsemblBacteria:EBMYCT00000071212
GeneID:13318140 GeneID:887975 GeneID:926315 KEGG:mtc:MT3416
KEGG:mtu:Rv3315c KEGG:mtv:RVBD_3315c PATRIC:18129262
TubercuList:Rv3315c ProtClustDB:PRK05578 GO:GO:0043100
GO:GO:0046109 Uniprot:O53367
Length = 133
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 41/115 (35%), Positives = 52/115 (45%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA-VS 100
P S+F VGA L GR+ G NVE L ++ AE ++ L RL LA V
Sbjct: 23 PYSRFAVGAAALVDDGRVVTGCNVENVSYGL--TLCAECAVVCALHSTGGGRLLALACVD 80
Query: 101 A-----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L E S++ I + + L LLPD FG +DL
Sbjct: 81 GHGSVLMPCGRCRQVLLE-HGGSELLI------DHPVRPRRLGDLLPDAFGLDDL 128
>SGD|S000004235 [details] [associations]
symbol:CDD1 "Cytidine deaminase" species:4932 "Saccharomyces
cerevisiae" [GO:0004126 "cytidine deaminase activity"
evidence=IEA;IDA] [GO:0009972 "cytidine deamination" evidence=IEA]
[GO:0008655 "pyrimidine-containing compound salvage" evidence=IDA]
[GO:0006217 "deoxycytidine catabolic process" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006216 "cytidine catabolic process"
evidence=IDA] InterPro:IPR002125 InterPro:IPR006262
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
SGD:S000004235 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0008270 EMBL:BK006945 GO:GO:0004126 SUPFAM:SSF53927
EMBL:U20865 eggNOG:COG0295 KO:K01489 GO:GO:0006217 GO:GO:0008655
TIGRFAMs:TIGR01354 HOGENOM:HOG000014707 OMA:KLVKMAL
GeneTree:ENSGT00390000000911 OrthoDB:EOG49CTJD EMBL:AF080089
EMBL:AY557930 PIR:S59391 RefSeq:NP_013346.1 PDB:1R5T PDBsum:1R5T
ProteinModelPortal:Q06549 SMR:Q06549 DIP:DIP-1252N IntAct:Q06549
MINT:MINT-398236 STRING:Q06549 PaxDb:Q06549 PeptideAtlas:Q06549
EnsemblFungi:YLR245C GeneID:850946 KEGG:sce:YLR245C CYGD:YLR245c
EvolutionaryTrace:Q06549 NextBio:967405 Genevestigator:Q06549
GermOnline:YLR245C Uniprot:Q06549
Length = 142
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 39/134 (29%), Positives = 56/134 (41%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF-LI 83
L+ L A L+ P S F VG L ++ IF G NVE I AE+ +I
Sbjct: 11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVE--NASYSNCICAERSAMI 68
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
L+ + + + +PCG CRQF+ E D I + + + K
Sbjct: 69 QVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFV-VKDFPIVMLNSTGSRSKVMT 127
Query: 137 LSHLLPDRFGPNDL 150
+ LLP FGP+ L
Sbjct: 128 MGELLPMAFGPSHL 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 294 0.00091 115 3 11 22 0.37 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 594 (63 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.14u 0.10s 23.24t Elapsed: 00:00:01
Total cpu time: 23.14u 0.10s 23.24t Elapsed: 00:00:01
Start: Sat May 11 02:55:06 2013 End: Sat May 11 02:55:07 2013