BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022046
(303 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255546161|ref|XP_002514140.1| cytidine deaminase 1, 2, 7, putative [Ricinus communis]
gi|223546596|gb|EEF48094.1| cytidine deaminase 1, 2, 7, putative [Ricinus communis]
Length = 311
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/320 (68%), Positives = 248/320 (77%), Gaps = 30/320 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
ME PRFVIEA+EAESMAQK+GLT+++LLPTLVKSAQ+LARPPIS ++VGAVGLGSSGRIF
Sbjct: 1 MEPPRFVIEASEAESMAQKAGLTLVELLPTLVKSAQSLARPPISDYYVGAVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
G N+EFPGLPLHQS+HAEQFLITNL LNAE L+++AVSAAPCGHCRQF QE+R+ DI
Sbjct: 61 FGANLEFPGLPLHQSVHAEQFLITNLFLNAESNLKYVAVSAAPCGHCRQFFQEIRDAPDI 120
Query: 121 NICIT----------SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNL 170
I IT N + +++ LS+LLP RFGP DLLDK VPL+LE H N MS L
Sbjct: 121 QILITGDSNNTNNNDQSNGDIKRFDTLSNLLPQRFGPYDLLDKSVPLVLEKHNNHMS--L 178
Query: 171 CNGQIPETENPK-----------ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
N I + N K + LK ALEAAN SHAPYSKCPSGVA+MDCEG +YKG
Sbjct: 179 QNDDI--SNNSKKVPNGISISVFDDLKLEALEAANSSHAPYSKCPSGVALMDCEGKVYKG 236
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SYMESAAYNPSLGPVQAA+VAYL GGGGGYE+IVAA LVEKE+AVVRQE ARLL
Sbjct: 237 SYMESAAYNPSLGPVQAAIVAYLV-----GGGGGYEKIVAAVLVEKEEAVVRQEFTARLL 291
Query: 280 LQVISPKCEFNVFHCGCKKS 299
LQVISP+CEF VFHC KS
Sbjct: 292 LQVISPRCEFKVFHCSSSKS 311
>gi|224088025|ref|XP_002308296.1| predicted protein [Populus trichocarpa]
gi|222854272|gb|EEE91819.1| predicted protein [Populus trichocarpa]
Length = 315
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/313 (67%), Positives = 244/313 (77%), Gaps = 22/313 (7%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M+ P FVIEA+EAESMA++SGLTVLQLLP LVKSAQ LARPPIS +HVGAVGLGSSGRIF
Sbjct: 1 MDGPIFVIEASEAESMAKQSGLTVLQLLPALVKSAQALARPPISDYHVGAVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LGGN+EFPGLPLH S+HAEQFLITNL LNAEP L+++AVSAAPCGHCRQFLQE+R+ D+
Sbjct: 61 LGGNLEFPGLPLHHSVHAEQFLITNLTLNAEPSLKYIAVSAAPCGHCRQFLQEIRHAPDV 120
Query: 121 NICITSINSNERKY----------HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFN- 169
I IT ++N + Y PLS LLP RFGP+DLLDKD+PLLLET N +SF
Sbjct: 121 QILITGDSTNNQSYKNDLANKQQFEPLSCLLPHRFGPDDLLDKDIPLLLETRHNNLSFVG 180
Query: 170 ---LCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
L NG ++ L+ ALEAANKSHAP++ CPSGVA+MDCEG +Y+GSYMESAA
Sbjct: 181 DALLPNGICASFDD----LENEALEAANKSHAPFTNCPSGVALMDCEGKVYRGSYMESAA 236
Query: 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
YNPS+GPVQAALVAY+ GG GGGY+RIVAA LVEK+ A RQE ARLLL+ ISPK
Sbjct: 237 YNPSIGPVQAALVAYVM----GGRGGGYDRIVAAVLVEKQGAKARQEQTARLLLKEISPK 292
Query: 287 CEFNVFHCGCKKS 299
CE VFHCG S
Sbjct: 293 CELKVFHCGSSSS 305
>gi|225444944|ref|XP_002282373.1| PREDICTED: cytidine deaminase-like [Vitis vinifera]
Length = 301
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/301 (68%), Positives = 240/301 (79%), Gaps = 14/301 (4%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
MER RFVIEA+EAES A+K+GLTV+QLLP+LV SAQ LARPPISK+HVGAVGLGSSGRIF
Sbjct: 1 MERSRFVIEASEAESKAEKAGLTVMQLLPSLVNSAQKLARPPISKYHVGAVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG N+EFPGLPL+ S+HAEQFLITNL L AE L+ LAVSAAPCGHCRQF QE+R+ DI
Sbjct: 61 LGVNLEFPGLPLNHSVHAEQFLITNLSLKAETHLRCLAVSAAPCGHCRQFFQEIRDAPDI 120
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF-NLCNGQIPET- 178
+ ITS S+++++ PLS LP+RFGP+DLLDKD PLLLE NG+S N Q+ T
Sbjct: 121 KVLITS--SSDQEFRPLSEFLPNRFGPDDLLDKDTPLLLEPQNNGLSLVNAIGSQLVNTG 178
Query: 179 -----ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
++ LKY ALEAANKSHAPYS CPSGVA++D EG +Y+GSYMESAAYNPSLGP
Sbjct: 179 CNGVCACDQDSLKYEALEAANKSHAPYSGCPSGVALIDSEGRVYRGSYMESAAYNPSLGP 238
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
VQAALVAY+A GGG GYE IV A LVEKE+A V+QE ARLLL +ISPKCEF VF+
Sbjct: 239 VQAALVAYIA-----GGGDGYEEIVGAVLVEKEEAQVKQEQTARLLLNLISPKCEFRVFY 293
Query: 294 C 294
C
Sbjct: 294 C 294
>gi|224103399|ref|XP_002334057.1| predicted protein [Populus trichocarpa]
gi|222839792|gb|EEE78115.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/297 (68%), Positives = 239/297 (80%), Gaps = 16/297 (5%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M+ P FVIEA+EAESMA++SGLTVLQLLPTLVKSAQ LARPPISK+HVGAVGLGSSGRIF
Sbjct: 1 MDGPIFVIEASEAESMAKQSGLTVLQLLPTLVKSAQALARPPISKYHVGAVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LGGN+EFPGLPLH S+HAEQFLITNL LNAEP L+++AVSAAPCGHCRQF QE+R+ DI
Sbjct: 61 LGGNIEFPGLPLHHSVHAEQFLITNLTLNAEPSLKYVAVSAAPCGHCRQFFQEIRHAPDI 120
Query: 121 NICITSIN----------SNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNL 170
+I IT + +NE ++ P+S LLP RFGP+DLL KDVPLLLE H N +SF L
Sbjct: 121 HILITGDSNSNHNYKNDLANEEQFEPMSCLLPHRFGPDDLLGKDVPLLLEPHHNNLSF-L 179
Query: 171 CNGQIPE-TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNP 229
+ ++P E LK ALEAA KSHAPY+ CPSG+A+MDCEG +++GSYMESAAYNP
Sbjct: 180 GDDKLPYGVSAALEDLKNEALEAAKKSHAPYTNCPSGLALMDCEGKVFRGSYMESAAYNP 239
Query: 230 SLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
S+GPVQAALVAY+ GG GGG++RIVAAALVEK+ A RQE ARLLL+ ISPK
Sbjct: 240 SMGPVQAALVAYVM----GGRGGGFDRIVAAALVEKQGAQARQEQTARLLLKEISPK 292
>gi|224122466|ref|XP_002330488.1| predicted protein [Populus trichocarpa]
gi|222872422|gb|EEF09553.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/297 (68%), Positives = 239/297 (80%), Gaps = 16/297 (5%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M+ P FVIEA+EAESMA++SGLTVLQLLPTLVKSAQ LARPPISK+HVGAVGLGSSGRIF
Sbjct: 1 MDGPIFVIEASEAESMAKQSGLTVLQLLPTLVKSAQALARPPISKYHVGAVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LGGN+EFPGLPLH S+HAEQFLITNL LNAEP L+++AVSAAPCGHCRQF QE+R+ DI
Sbjct: 61 LGGNIEFPGLPLHHSVHAEQFLITNLTLNAEPSLKYVAVSAAPCGHCRQFFQEIRHAPDI 120
Query: 121 NICITSIN----------SNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNL 170
+I IT + +NE ++ P+S LLP RFGP+DLL KDVPLLLE H N +SF L
Sbjct: 121 HILITGDSNSNHNYKNDLANEEQFEPMSCLLPHRFGPDDLLGKDVPLLLEPHHNNLSF-L 179
Query: 171 CNGQIPE-TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNP 229
+ ++P E LK ALEAA KSHAPY+ CPSG+A+MDCEG +++GSYMESAAYNP
Sbjct: 180 GDDKLPYGVSAALEDLKNEALEAAKKSHAPYTNCPSGLALMDCEGKVFRGSYMESAAYNP 239
Query: 230 SLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
S+GPVQAALVAY+ GG GGG++RIVAAALVEK+ A RQE ARL+L+ ISPK
Sbjct: 240 SMGPVQAALVAYVM----GGRGGGFDRIVAAALVEKQGAQARQEQTARLILKEISPK 292
>gi|15224801|ref|NP_179547.1| cytidine deaminase 1 [Arabidopsis thaliana]
gi|6090835|gb|AAF03358.1|AF134487_1 cytidine deaminase 1 [Arabidopsis thaliana]
gi|3046700|emb|CAA06460.1| cytidine deaminase [Arabidopsis thaliana]
gi|3093276|emb|CAA06671.1| cytidine deaminase [Arabidopsis thaliana]
gi|4191787|gb|AAD10156.1| putative cytidine deaminase [Arabidopsis thaliana]
gi|22135974|gb|AAM91569.1| putative cytidine deaminase [Arabidopsis thaliana]
gi|30984516|gb|AAP42721.1| At2g19570 [Arabidopsis thaliana]
gi|330251802|gb|AEC06896.1| cytidine deaminase 1 [Arabidopsis thaliana]
Length = 301
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/306 (62%), Positives = 228/306 (74%), Gaps = 20/306 (6%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M++P FVI++ EAES A++ G++V+QLLP+LVK AQ+ AR PISKF+V VGLGSSGRIF
Sbjct: 1 MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEFP LPLH SIHAEQFL+TNL LN E L AVSAAPCGHCRQFLQE+R+ +I
Sbjct: 61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120
Query: 121 NICITSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF---- 168
I IT N++ + L LP RFGP+DLL KD PLLLE+H N +
Sbjct: 121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180
Query: 169 NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
++CNG + + LK AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYN
Sbjct: 181 SICNGNTDSSAD----LKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYN 236
Query: 229 PSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
PS+GPVQAALV Y+A GGGGGYERIV A LVEKEDAVVRQEH ARLLL+ ISPKCE
Sbjct: 237 PSMGPVQAALVDYVA----NGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPKCE 292
Query: 289 FNVFHC 294
F VFHC
Sbjct: 293 FKVFHC 298
>gi|21553586|gb|AAM62679.1| putative cytidine deaminase [Arabidopsis thaliana]
Length = 301
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 228/306 (74%), Gaps = 20/306 (6%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M++P FVI++ EAES A++ G++V+QLLP+LVK AQ+ AR PISKF+V VGLGSSGRIF
Sbjct: 1 MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEFP LPLH SIHAEQFL+TNL LN E L AVSAAPCGHCRQFLQE+R+ +I
Sbjct: 61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120
Query: 121 NICITSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF---- 168
I IT N++ + L LP RFGP+DLL KD PLLLE+H N +
Sbjct: 121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180
Query: 169 NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
++CNG + + LK AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYN
Sbjct: 181 SICNGNTDSSAD----LKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYN 236
Query: 229 PSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
PS+GPVQAALV Y+A GGGGGYERIV A LVEK+DAVVRQEH ARLLL+ ISPKCE
Sbjct: 237 PSMGPVQAALVDYVA----NGGGGGYERIVGAVLVEKKDAVVRQEHTARLLLETISPKCE 292
Query: 289 FNVFHC 294
+ VFHC
Sbjct: 293 YKVFHC 298
>gi|449435848|ref|XP_004135706.1| PREDICTED: cytidine deaminase-like [Cucumis sativus]
Length = 304
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/308 (65%), Positives = 233/308 (75%), Gaps = 22/308 (7%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M+ RFVIEA EAES+A++S LT+ LLPTLVKSAQ+LARPPISK+HVGAVGLGSSGR+F
Sbjct: 1 MDGTRFVIEAPEAESLAKQSALTIPLLLPTLVKSAQSLARPPISKYHVGAVGLGSSGRVF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
G N+EFPGLPLHQS+HAEQFL+TNL LNAE L +LAVSAAPCGHCRQFLQE+R+++DI
Sbjct: 61 FGVNLEFPGLPLHQSVHAEQFLVTNLALNAESHLNYLAVSAAPCGHCRQFLQEVRSSADI 120
Query: 121 NICITSINSNERK------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF------ 168
I ++ S+ Y PL LP RFGP DLL KDVPLLLE NG+S
Sbjct: 121 KILVSDSGSDSGSDSKPDVYVPLPQFLPHRFGPYDLLAKDVPLLLEPRFNGLSLPNETAE 180
Query: 169 --NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
LCNG E E+LK AAL+AAN SHAPYSKCPSGVA+MD G IY G YMESAA
Sbjct: 181 NNKLCNGNHGEN---LEKLKRAALDAANMSHAPYSKCPSGVALMDDNGRIYNGPYMESAA 237
Query: 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
YNPS+GPVQAA+VAY+A GGG GYERIVAA LVEK+ V+QE AARLLL+ ISP+
Sbjct: 238 YNPSMGPVQAAIVAYIA-----GGGAGYERIVAAVLVEKDGVEVKQERAARLLLETISPE 292
Query: 287 CEFNVFHC 294
CEF V HC
Sbjct: 293 CEFTVVHC 300
>gi|4836452|gb|AAD30449.1|AF121878_1 cytidine deaminase [Arabidopsis thaliana]
Length = 304
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 188/308 (61%), Positives = 224/308 (72%), Gaps = 21/308 (6%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M++P FVI++ EAES A++ G++V+QLLP+LVK AQ+ AR PISKF+V VGLGSSGRIF
Sbjct: 1 MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEFP LPLH SIHAEQFL+TNL LN E L AVSAAPCGHCRQFLQE+R+ +I
Sbjct: 61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120
Query: 121 NICITSINSNERK----------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF-- 168
I IT N++ + L LP RFGP+DLL KD PLLLE+H N +
Sbjct: 121 KILITDPNNSADSDSDSAADSDGFLALGSFLPHRFGPDDLLGKDTPLLLESHDNHLKISD 180
Query: 169 --NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
++CNG T++ AL AAN+ PYS CPSGV+++DC+G +Y+G YMESAA
Sbjct: 181 LDSICNGN---TDSSGRFEIKRALAAANRCTRPYSLCPSGVSLVDCDGKVYRGWYMESAA 237
Query: 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
YNPS+GPVQAALV Y+A GGGGGYERIV A LVEKEDAVVRQEH ARLLL+ ISPK
Sbjct: 238 YNPSMGPVQAALVDYVA----NGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPK 293
Query: 287 CEFNVFHC 294
CEF VFHC
Sbjct: 294 CEFKVFHC 301
>gi|357520685|ref|XP_003630631.1| Cytidine deaminase [Medicago truncatula]
gi|355524653|gb|AET05107.1| Cytidine deaminase [Medicago truncatula]
Length = 287
Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 184/294 (62%), Positives = 220/294 (74%), Gaps = 8/294 (2%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M+RP FVIEA EA+SMA+ S LT+ QLLP+LV SAQ+LARPPIS FHVGAVGL SGRI
Sbjct: 1 MDRPVFVIEATEAKSMAKSSSLTLTQLLPSLVTSAQSLARPPISNFHVGAVGLSPSGRIL 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+G NVEFPGLPLH SIHAEQFL+TNL L+ EP L AVSAAPCGHCRQF QE+R DI
Sbjct: 61 IGVNVEFPGLPLHHSIHAEQFLLTNLSLHDEPNLHSFAVSAAPCGHCRQFFQEIRGAPDI 120
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETEN 180
I ITS ++ + LSH LP RFGP+DLL + PL LE NG++ L NG + + +
Sbjct: 121 QIIITS--ESDPNFTSLSHFLPYRFGPHDLLPQHAPLFLEPRNNGLTQKLPNG-VCKGDA 177
Query: 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA 240
E+LK AA+E ANKSHAPYS PSG+AI+DC G IYKGSY+ESAA+NPSLGP+QAA+VA
Sbjct: 178 VDEKLKIAAMEGANKSHAPYSNSPSGMAIVDCNGKIYKGSYVESAAFNPSLGPLQAAVVA 237
Query: 241 YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
++ GGGG Y+ IV A LVEK+ A+V+QE RLLL+ ISPKC+ F C
Sbjct: 238 FMV-----GGGGKYDEIVGAVLVEKDGAMVKQEGTVRLLLEAISPKCQLQTFLC 286
>gi|6090831|gb|AAF03356.1|AF134485_1 cytidine deaminase 1 [Arabidopsis thaliana]
Length = 288
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 182/296 (61%), Positives = 219/296 (73%), Gaps = 20/296 (6%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M++P FVI++ EAES A++ G++V+QLLP+LVK AQ+ AR PISKF+V VGLGSSGRIF
Sbjct: 1 MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEFP LPLH SIHAEQFL+TNL LN E L AVSAAPCGHCRQFLQE+R+ +I
Sbjct: 61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120
Query: 121 NICITSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF---- 168
I IT N++ + L LP RFGP+DLL KD PLLLE+H N +
Sbjct: 121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180
Query: 169 NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
++CNG + + LK AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYN
Sbjct: 181 SICNGNTDSSAD----LKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYN 236
Query: 229 PSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS 284
PS+GPVQAALV Y+A GGGGGYERIV A LVEKEDAVVRQEH ARLLL+ IS
Sbjct: 237 PSMGPVQAALVDYVA----NGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETIS 288
>gi|357501295|ref|XP_003620936.1| Cytidine deaminase [Medicago truncatula]
gi|355495951|gb|AES77154.1| Cytidine deaminase [Medicago truncatula]
Length = 298
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 180/297 (60%), Positives = 219/297 (73%), Gaps = 6/297 (2%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
ME P+F+IE +EA+S+ Q + LT+ QLLPT+VKS+Q LAR PISKFHV AV +G SGRIF
Sbjct: 1 MEEPKFIIEVSEAKSLTQSTNLTLTQLLPTIVKSSQPLARVPISKFHVAAVAVGISGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+G NVEFP LP H +IHAEQFL+TNL N E ++Q+LAVSAAPCGHCRQFLQE+R DI
Sbjct: 61 IGVNVEFPNLPFHHTIHAEQFLLTNLSHNKETQIQYLAVSAAPCGHCRQFLQEIRGAGDI 120
Query: 121 NICITSI--NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ ITS + + ++ LS L FGP+DLL K VPLLLE N + F G P T
Sbjct: 121 PLLITSDLEKTAKTEFTSLSEFLSHPFGPHDLLPKHVPLLLEPRHNDLCFIEIEG--PIT 178
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ K LK AAL+AAN+SHAPYS PSGVA++D GN+YKGSYMESAAYNPS+GPVQAAL
Sbjct: 179 NSIKPHLKDAALKAANESHAPYSDSPSGVALLDSRGNVYKGSYMESAAYNPSMGPVQAAL 238
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCG 295
VA++ G+ G Y +V A LVEKEDAVV+QE ARLLL+ I+P+C FNVF C
Sbjct: 239 VAFIV--GARDGAAEYGELVEAVLVEKEDAVVKQEDTARLLLRSIAPQCSFNVFLCS 293
>gi|297832204|ref|XP_002883984.1| hypothetical protein ARALYDRAFT_480515 [Arabidopsis lyrata subsp.
lyrata]
gi|297329824|gb|EFH60243.1| hypothetical protein ARALYDRAFT_480515 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 186/302 (61%), Positives = 224/302 (74%), Gaps = 12/302 (3%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M++P FVI+ EAES A++ G++VL+LLP+LVK AQ+ AR PISKF+VG VGLGSSGRIF
Sbjct: 1 MDKPSFVIQPKEAESAAKQLGVSVLRLLPSLVKPAQSYARTPISKFNVGVVGLGSSGRIF 60
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEFP LPLH SIHAEQFL+TNL LN E L+ AVSAAPCGHCRQFLQE+R+ +I
Sbjct: 61 LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLKFFAVSAAPCGHCRQFLQEIRDAPEI 120
Query: 121 NICITSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCN 172
I IT ++ + L LP RFGP+DLL+KD+PLLLE H N + + +
Sbjct: 121 KILITDPKNSADSDSAADSDGFLRLGSFLPHRFGPDDLLEKDLPLLLEPHDNHLKISDLD 180
Query: 173 GQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLG 232
+ LK AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYNPS+G
Sbjct: 181 SIRNGITDSSADLKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYNPSMG 240
Query: 233 PVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
PVQAALV Y+A GGGGGYERI+ A LVEKEDAVVRQE ARLLL+ ISPKCEF VF
Sbjct: 241 PVQAALVDYVA----NGGGGGYERIIGAVLVEKEDAVVRQERTARLLLETISPKCEFKVF 296
Query: 293 HC 294
HC
Sbjct: 297 HC 298
>gi|388520915|gb|AFK48519.1| unknown [Lotus japonicus]
Length = 294
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 182/303 (60%), Positives = 218/303 (71%), Gaps = 16/303 (5%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M+RP F+IE +E++S +GLT+ QLLP+LV +A+TLARPPIS F V AVGL SSGRIF
Sbjct: 1 MDRPGFIIEPSESQS----TGLTLTQLLPSLVNAAKTLARPPISNFRVAAVGLSSSGRIF 56
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+G N+EFPGLPLH S+HAEQFL+TNL LN E L AVSAAPCGHCRQFLQELR +I
Sbjct: 57 IGVNLEFPGLPLHHSVHAEQFLLTNLSLNNETNLHSFAVSAAPCGHCRQFLQELRGAPEI 116
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF----NLCNGQIP 176
I ITS + K+ PLSH LP RF P+DLL PLLLE H NG++ CN
Sbjct: 117 QILITS--EPDPKFTPLSHFLPHRFSPHDLLPPRAPLLLEYHHNGLTLLRENGFCNNGHA 174
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E K +L AALEAANKSHAPYS PSGVA++D G +Y+GSY+ESAA+NPSLGPVQA
Sbjct: 175 LREKSKSKLA-AALEAANKSHAPYSDSPSGVALVDSGGKLYRGSYVESAAFNPSLGPVQA 233
Query: 237 ALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGC 296
ALVA++A GGGG YE IV A LVEK+ VV+QE A+LLL I+P C+F F C
Sbjct: 234 ALVAFVA-----GGGGEYEEIVEAVLVEKDGTVVKQEQTAKLLLNSIAPNCQFETFLCHS 288
Query: 297 KKS 299
++S
Sbjct: 289 QQS 291
>gi|356513219|ref|XP_003525311.1| PREDICTED: cytidine deaminase-like [Glycine max]
Length = 293
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 186/297 (62%), Positives = 225/297 (75%), Gaps = 15/297 (5%)
Query: 1 MERP--RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
M+ P +FVIEA+EA ++A+ + +T+ +LLPTLV +AQ LARPPISKF V AVGL SGR
Sbjct: 1 MDPPPSKFVIEASEALALAESAAVTLPELLPTLVPAAQPLARPPISKFSVAAVGLAPSGR 60
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
IF+G N+EFPGLPLH S+HAEQFLITNL LNAEP L LAVSAAPCGHCRQFLQELR +
Sbjct: 61 IFVGVNLEFPGLPLHHSVHAEQFLITNLSLNAEPHLVSLAVSAAPCGHCRQFLQELRAAA 120
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF-NLCNGQIPE 177
D+ I +TS + E + LS LP RFGP+DLL + PLLLE H ++ + N +
Sbjct: 121 DVKILVTSEATAE--FRALSDFLPHRFGPHDLLPLEAPLLLEPHHYTLTLQHYLNAHV-- 176
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
P +LK AALEAANKSHAPYS PSGVA++DC GN++KGSYMESAA+NPSLGPVQAA
Sbjct: 177 ---PNHKLKIAALEAANKSHAPYSGSPSGVALLDCHGNVFKGSYMESAAFNPSLGPVQAA 233
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
LVA++A GGGG Y+RIV AALVE + AVV+QEH ARLL+ ISP C+F+ F C
Sbjct: 234 LVAFVA-----GGGGDYDRIVGAALVEMDGAVVKQEHTARLLIHSISPNCQFDTFLC 285
>gi|356520873|ref|XP_003529084.1| PREDICTED: cytidine deaminase-like [Glycine max]
Length = 278
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/290 (60%), Positives = 211/290 (72%), Gaps = 21/290 (7%)
Query: 3 RPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLG 62
PRFVI A+EAES ++ +LLP+LV S+Q+LARP IS F V AVGL +SGRIF+G
Sbjct: 2 EPRFVISASEAESQ------SISKLLPSLVSSSQSLARPSISNFPVAAVGLAASGRIFVG 55
Query: 63 GNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINI 122
NVEFPGLP H +IHAEQFL+TN+ NAE RL AVSAAPCGHCRQFLQELR+ DI I
Sbjct: 56 VNVEFPGLPFHHTIHAEQFLLTNMANNAETRLDSFAVSAAPCGHCRQFLQELRDAPDIQI 115
Query: 123 CITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPK 182
ITS + PLSH L FGP+DLL K VPLLLE N +S +P+ ++
Sbjct: 116 LITS--HKNPHFSPLSHFLSHHFGPHDLLPKTVPLLLEPRHNALS-------LPQNDH-F 165
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
L AALEAAN SHAPYS PSGVA++D +GN++KGSY+ESAAYNPSLGP+QAA+VA++
Sbjct: 166 NALAIAALEAANNSHAPYSASPSGVALLDSKGNVFKGSYIESAAYNPSLGPLQAAIVAFI 225
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
A GGGG YE IVAA LVEKE AV++Q+H ARLLL I+P+C FN F
Sbjct: 226 A-----GGGGDYEEIVAAVLVEKEGAVIKQDHTARLLLHSIAPRCHFNNF 270
>gi|356523906|ref|XP_003530575.1| PREDICTED: cytidine deaminase-like [Glycine max]
Length = 277
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 174/299 (58%), Positives = 215/299 (71%), Gaps = 29/299 (9%)
Query: 1 MERP--RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
M++P +F+I A+EA +MA+ + +T+ +LLPTLV +AQ LA SGR
Sbjct: 1 MDQPSRKFLISASEALAMAESAAVTLPELLPTLVPTAQPLA---------------PSGR 45
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
I +G N+EFPGLPLH S+HAEQFLITNL LNAEP L LAVSAAPCGHCRQFLQELR +
Sbjct: 46 ILVGVNLEFPGLPLHHSVHAEQFLITNLSLNAEPHLVSLAVSAAPCGHCRQFLQELRAAA 105
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
D+ I +TS + E + PLS LLP RF P+DLL + PLLLE H N ++ L + +
Sbjct: 106 DVQILVTSEATAE--FGPLSDLLPQRFCPHDLLPLEAPLLLEPHHNTLTLTLHHQHL--- 160
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
P +LK AALEAANKSHAPYS PSGVA++DC GN++KGSYMESAA+NPSLGPVQAAL
Sbjct: 161 --PNYKLKTAALEAANKSHAPYSGSPSGVALLDCHGNVFKGSYMESAAFNPSLGPVQAAL 218
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCK 297
VA+++ GGGG Y++IV A LVEKEDAVV+QE ARLL+ ISP C+F+ F C C
Sbjct: 219 VAFVS-----GGGGDYDQIVGAVLVEKEDAVVKQESTARLLINSISPNCQFDTFLCHCN 272
>gi|168016627|ref|XP_001760850.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687859|gb|EDQ74239.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 290
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 156/295 (52%), Positives = 200/295 (67%), Gaps = 8/295 (2%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P FVI++ +A + SGL V Q L +LVK LARPPISKFHVGAVGLG SGRIF G
Sbjct: 2 PEFVIDSVKAAKLQHASGLGVEQFLASLVKPTAALARPPISKFHVGAVGLGISGRIFRGV 61
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EFPGLPL+ ++HAEQFL+ N + + E R+ LAVSAAPCGHCRQFLQELR+ +I +
Sbjct: 62 NLEFPGLPLNCTVHAEQFLVANALQHGEKRIVFLAVSAAPCGHCRQFLQELRDAGNIRVL 121
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
+T + + + PLS+ LP RFGP+DLL KD PLLLE+ NG+ +L N + ++
Sbjct: 122 VT--DGKDAQVRPLSYFLPHRFGPDDLLSKDFPLLLESRANGLEPSL-NSWLRNSKRSLL 178
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
LK AA AAN S+APYS+CPSGVAI +G IY+GSYMESAAYNP L +QAA+VA++
Sbjct: 179 ELKTAAFVAANASYAPYSRCPSGVAIYTKKGEIYRGSYMESAAYNPGLPALQAAIVAFIC 238
Query: 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKK 298
GGG Y I AA LVE DA VR RL L+ ++P+ F+ + ++
Sbjct: 239 -----GGGSNYGEIEAAVLVETVDAPVRHAATVRLALESLAPQASFHFYEAHVQR 288
>gi|297738679|emb|CBI27924.3| unnamed protein product [Vitis vinifera]
Length = 305
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 163/295 (55%), Positives = 190/295 (64%), Gaps = 71/295 (24%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
MER RFVIEA+EAES A+K+GLTV+QLLP+LV SAQ LARPPISK+HVGAVGLGSSG
Sbjct: 21 MERSRFVIEASEAESKAEKAGLTVMQLLPSLVNSAQKLARPPISKYHVGAVGLGSSG--- 77
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
R FL E+R+ DI
Sbjct: 78 -----------------------------------------------RIFLGEIRDAPDI 90
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF-NLCNGQIPETE 179
+ ITS S+++++ PLS LP+RFGP+DLLDKD PLLLE NG+S N Q+
Sbjct: 91 KVLITS--SSDQEFRPLSEFLPNRFGPDDLLDKDTPLLLEPQNNGLSLVNAIGSQL---- 144
Query: 180 NPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
ALEAANKSHAPYS CPSGVA++D EG +Y+GSYMESAAYNPSLGPVQAALV
Sbjct: 145 ---------ALEAANKSHAPYSGCPSGVALIDSEGRVYRGSYMESAAYNPSLGPVQAALV 195
Query: 240 AYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
AY+A GGG GYE IV A LVEKE+A V+QE ARLLL +ISPKCEF VF+C
Sbjct: 196 AYIA-----GGGDGYEEIVGAVLVEKEEAQVKQEQTARLLLNLISPKCEFRVFYC 245
>gi|297803070|ref|XP_002869419.1| hypothetical protein ARALYDRAFT_913535 [Arabidopsis lyrata subsp.
lyrata]
gi|297315255|gb|EFH45678.1| hypothetical protein ARALYDRAFT_913535 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/291 (52%), Positives = 197/291 (67%), Gaps = 17/291 (5%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
F++ EA+S + + L+P L R P S V A+GLGSSGR+F+G NV
Sbjct: 7 FILTPNEAKSAGVSDPIHLPLLIP--------LVRSPFSTLKVIALGLGSSGRVFVGVNV 58
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--AAPCGHCRQFLQELRNTSDINIC 123
EFPGLPLH SIHAEQFL+ NL LN+EP+L ++AVS +APCGHCRQFLQE+R +I I
Sbjct: 59 EFPGLPLHHSIHAEQFLVANLALNSEPKLNYIAVSPPSAPCGHCRQFLQEIREAPEIKIL 118
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
+T N + + L LLP+R GP LL ++VP LLE NG+ + G P+
Sbjct: 119 LTDQNGDNESFVSLESLLPERLGPESLLPENVPRLLEPCYNGL---ILAG--PDVPYRYP 173
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
LK A L A N+S+APYSKCPSGVA++D +G++Y+G YMES AYNPSLGPVQAALV Y+
Sbjct: 174 DLKPAGLAAVNRSYAPYSKCPSGVALVDRQGSVYRGWYMESVAYNPSLGPVQAALVDYMV 233
Query: 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
GGG GG++ IV A LVEK+DA VRQE AR++++ I+P C+F VFHC
Sbjct: 234 R--CGGGDGGFKEIVGAVLVEKKDAEVRQEQTARMIMETIAPNCDFKVFHC 282
>gi|6090833|gb|AAF03357.1|AF134486_1 cytidine deaminase 1, partial [Arabidopsis thaliana]
Length = 237
Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 149/242 (61%), Positives = 174/242 (71%), Gaps = 20/242 (8%)
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
VEFP LPLH SIHAEQFL+TNL LN E L AVSAAPCGHCRQFLQE+R+ +I I I
Sbjct: 1 VEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEIKILI 60
Query: 125 TSINSNERK--------YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFN----LCN 172
T N++ + L LP RFGP+DLL KD PLLLE+H N + + +CN
Sbjct: 61 TDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLDSICN 120
Query: 173 GQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLG 232
G + + LK AL AAN+S+APYS CPSGV+++DC+G +Y+G YMESAAYNPS+G
Sbjct: 121 GNTDSSAD----LKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYNPSMG 176
Query: 233 PVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
PVQAALV Y+A GGGGGYERIV A LVEKEDAVVRQEH ARLLL+ ISPKCEF VF
Sbjct: 177 PVQAALVDYVA----NGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPKCEFKVF 232
Query: 293 HC 294
HC
Sbjct: 233 HC 234
>gi|302767722|ref|XP_002967281.1| hypothetical protein SELMODRAFT_87303 [Selaginella moellendorffii]
gi|300165272|gb|EFJ31880.1| hypothetical protein SELMODRAFT_87303 [Selaginella moellendorffii]
Length = 304
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/301 (51%), Positives = 198/301 (65%), Gaps = 18/301 (5%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FVI A +AE SG+++ L +LV+ + LARPPIS F VGAVGLGSSGR+F G N+
Sbjct: 6 FVIAADDAEQQRSSSGMSIQAFLGSLVEPTRDLARPPISNFRVGAVGLGSSGRVFRGVNL 65
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
EFPGLPLH S+HAEQFL+ NL + E ++ LAVSAAPCGHCRQFLQELR D+ + I
Sbjct: 66 EFPGLPLHHSVHAEQFLVANLAQHGEISIEFLAVSAAPCGHCRQFLQELRGAKDLELFIV 125
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLL--DKDVPLLLETHQNGMSFNLCNGQIPETEN--- 180
++E + LS LP RFGP+DLL D D PLLLE+ NG+ F + +
Sbjct: 126 DGENSETQL--LSRFLPHRFGPDDLLAQDLDFPLLLESRNNGLVFEGLDHKCYRGREEDG 183
Query: 181 ------PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
E L+ ALEAANKS+APY+ CPSGVAI ++ GSY ESAA+NPSL P+
Sbjct: 184 LDLSGLEDESLRDTALEAANKSYAPYTGCPSGVAIFTRSARVFAGSYCESAAFNPSLPPL 243
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
QAA+VA++A GGGGY+ IV A LVEK+++ V+Q R+ L ISP+C +V++
Sbjct: 244 QAAIVAFVA-----NGGGGYQDIVCAVLVEKKNSSVQQAPTTRMALDQISPRCPLHVYYA 298
Query: 295 G 295
G
Sbjct: 299 G 299
>gi|116789115|gb|ABK25121.1| unknown [Picea sitchensis]
Length = 338
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 163/341 (47%), Positives = 209/341 (61%), Gaps = 58/341 (17%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FVIEA E + + +++GL+ +Q L TLVK Q LAR PISKF+VGAVGLG+SGRIF G N+
Sbjct: 7 FVIEADEVQRLCKEAGLSEIQYLATLVKPTQLLARAPISKFYVGAVGLGASGRIFKGVNL 66
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
EF GLPL+ S++AEQFL+ N + E +L+ +AVSAAPCGHCRQFLQEL +INI I
Sbjct: 67 EFEGLPLNHSVYAEQFLVANAAQHGELQLRFIAVSAAPCGHCRQFLQELWGVPEINILIA 126
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF------------NLCNG 173
++ R L + LP RFGP+D L++ PL+ E H NG++F NLCNG
Sbjct: 127 DEHAETRS---LLYFLPHRFGPDD-LEESTPLVFEPHFNGLAFWSMNSPELNSKLNLCNG 182
Query: 174 QIPETENP----------KE---------------------------RLKYAALEAANKS 196
E+ KE +L+ AAL+AAN S
Sbjct: 183 DQDVKEDALNLCNRDGDVKEDTFDLCNGDGDLKEESIHNFSDSEDLYQLRVAALKAANSS 242
Query: 197 HAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYER 256
HAPYSKCPSG+A+M +G I G Y+ESAA+NPSL P+QAA+VA++ GG YE
Sbjct: 243 HAPYSKCPSGIALMTTKGKICTGFYIESAAFNPSLSPLQAAIVAFICQ-----DGGNYED 297
Query: 257 IVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCK 297
IV A LVEK+ AVV+Q +L LQ ISPKC F+ F+C K
Sbjct: 298 IVHAVLVEKKGAVVQQGDTIKLALQKISPKCSFHPFNCYIK 338
>gi|302754030|ref|XP_002960439.1| hypothetical protein SELMODRAFT_73389 [Selaginella moellendorffii]
gi|300171378|gb|EFJ37978.1| hypothetical protein SELMODRAFT_73389 [Selaginella moellendorffii]
Length = 304
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 195/301 (64%), Gaps = 18/301 (5%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FVI A +AE SG+++ L +LV+ + LARPPIS F VGAVGLGSSGR+F G N+
Sbjct: 6 FVIAADDAEQQRSSSGMSIQAFLGSLVEPTRDLARPPISNFRVGAVGLGSSGRVFRGVNL 65
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
EFPGLPLH S+HAEQFL+ NL + E ++ LAVSAAPCGHCRQFLQELR D+ + I
Sbjct: 66 EFPGLPLHHSVHAEQFLVANLAQHGEISIEFLAVSAAPCGHCRQFLQELRGAKDLELFIV 125
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLL--DKDVPLLLETHQNGMSFNLCNGQIPETEN--- 180
++E + LS LP RFGP+DLL D D PLLLE NG+ + +
Sbjct: 126 DGENSETQL--LSRFLPHRFGPDDLLAQDLDFPLLLEPRNNGLVLEGLDHKCYRGREEDG 183
Query: 181 ------PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
RL+ AALEAANKS+APY+ PSGVAI ++ GSY ESAA+NPSL P+
Sbjct: 184 LDLSGLEDARLRDAALEAANKSYAPYTGSPSGVAIFTRNARVFSGSYCESAAFNPSLPPL 243
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
QAA+VA++A GGGGY+ IV A LVE +++ V+Q R+ L ISP+C +V++
Sbjct: 244 QAAIVAFVA-----NGGGGYQDIVCAVLVETKNSSVQQAPTTRMALDQISPRCPLHVYYA 298
Query: 295 G 295
G
Sbjct: 299 G 299
>gi|167998354|ref|XP_001751883.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696981|gb|EDQ83318.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 325
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 197/328 (60%), Gaps = 41/328 (12%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FVI AA+A + + SGL V Q L +LV+S ARP ISKFHVGAVGLG SGRI+ G N+
Sbjct: 4 FVIGAAKASKLRRASGLGVEQFLASLVRSTAESARPAISKFHVGAVGLGVSGRIYKGVNL 63
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
EFP LPL S+HAEQFL+ N + + E RL +AVS APCGHCRQFLQELR+ DI + +T
Sbjct: 64 EFPKLPLSHSVHAEQFLVANALQHGETRLVFIAVSTAPCGHCRQFLQELRDAGDIRVLVT 123
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF-----------NLCNG- 173
N + + HPLS+ LP RFGP+D+L K+ P LLE+ N + F +L G
Sbjct: 124 --NGKDSQAHPLSYFLPHRFGPDDVLSKEFPPLLESRSNRLIFLASTTNSEDDCDLSCGV 181
Query: 174 -QIPETENPKER---------------------LKYAALEAANKSHAPYSKCPSGVAIMD 211
T+ K+R LK AA AAN S+A YS+CPSGVA++
Sbjct: 182 HNDDSTDVTKKRNLTREASFGSWLRGSKRSLLDLKLAAFNAANASYAVYSRCPSGVALVT 241
Query: 212 CEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVR 271
G +Y GSY+ESAAYNP L +QAA+V+++ GGG YE I A LVE DA+V+
Sbjct: 242 RNGEVYSGSYIESAAYNPGLPALQAAIVSFIC-----GGGTDYEEIDTAILVETRDAIVQ 296
Query: 272 QEHAARLLLQVISPKCEFNVFHCGCKKS 299
Q RL LQ I+P+ F F KS
Sbjct: 297 QASTVRLTLQTIAPQANFRHFEADAHKS 324
>gi|15233626|ref|NP_194690.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|5123555|emb|CAB45321.1| cytidine deaminase 6 (CDA6) [Arabidopsis thaliana]
gi|7269860|emb|CAB79719.1| cytidine deaminase 6 (CDA6) [Arabidopsis thaliana]
gi|332660251|gb|AEE85651.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 293
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/290 (50%), Positives = 184/290 (63%), Gaps = 20/290 (6%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S A + G+ LP L+ A +LAR P+S F VGAVGL SSG +FLG NVEFP LPLH
Sbjct: 8 SEAAEEGVRGPSDLPKLIDKAMSLARAPVSTFKVGAVGLTSSGEVFLGVNVEFPNLPLHH 67
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSIN 128
+IHAEQFL+TNL LN+ +L H+AVS APCGHCRQF QE+RN +I I I
Sbjct: 68 TIHAEQFLVTNLALNSMKKLTHIAVSVTGTIFGAPCGHCRQFYQEMRNAPEIEILIKRPK 127
Query: 129 SNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET--ENPKE--R 184
++ L L+P+RFGP+ +L +D LLLE N + + PE +P++
Sbjct: 128 DGIDEFMSLKSLMPERFGPDSILPEDASLLLEQRDNSLVLS-----DPEEICSDPEDCSH 182
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
K AL AANKS+APYSKCPSGVA++ C G +YKG Y+ES AYNPSLGPV+AALV ++A
Sbjct: 183 TKCRALAAANKSYAPYSKCPSGVALI-CGGEVYKGWYIESVAYNPSLGPVEAALVDFVAR 241
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
GGG + I LVE +D V QE AR L I+PKC+F V HC
Sbjct: 242 ----GGGKEFNEITEVVLVEMKDVKVSQEATARTFLDKIAPKCDFKVLHC 287
>gi|4836446|gb|AAD30444.1|AF121877_4 DesD [Arabidopsis thaliana]
Length = 293
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/277 (51%), Positives = 179/277 (64%), Gaps = 20/277 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
LP L+ A +LAR P+S F VGAVGL SSG +FLG NVEFP LPLH +IHAEQFL+TNL
Sbjct: 21 LPKLIDKAMSLARAPVSTFKVGAVGLTSSGEVFLGVNVEFPNLPLHHTIHAEQFLVTNLA 80
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
LN+ +L H+AVS APCGHCRQF QE+RN +I I I ++ L L+
Sbjct: 81 LNSMKKLTHIAVSVTGTIFGAPCGHCRQFYQEMRNAPEIEILIKRPKDGIDEFMSLKSLM 140
Query: 142 PDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET--ENPKE--RLKYAALEAANKSH 197
P+RFGP+ +L +D LLLE N + + PE +P++ K AL AANKS+
Sbjct: 141 PERFGPDSILPEDASLLLEQRDNSLVLS-----DPEEICSDPEDCSHTKCRALAAANKSY 195
Query: 198 APYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERI 257
APYSKCPSGVA++ C G +YKG Y+ES AYNPSLGPV+AALV ++A GGG + I
Sbjct: 196 APYSKCPSGVALI-CGGEVYKGWYIESVAYNPSLGPVEAALVDFVAR----GGGKEFNEI 250
Query: 258 VAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
LVE +D V QE AR L I+PKC+F V HC
Sbjct: 251 TEVVLVEMKDVKVSQEATARTFLDKIAPKCDFKVLHC 287
>gi|3818575|gb|AAC69566.1| cytidine deaminase 6 [Arabidopsis thaliana]
Length = 293
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/277 (51%), Positives = 179/277 (64%), Gaps = 20/277 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
LP L+ A +LAR P+S F VGAVGL SSG +FLG NVEFP LPLH +IHAEQFL+TNL
Sbjct: 21 LPKLIDKAMSLARAPVSTFKVGAVGLTSSGEVFLGVNVEFPNLPLHHTIHAEQFLVTNLA 80
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
LN+ +L H+AVS APCGHCRQF QE+RN +I I I ++ L L+
Sbjct: 81 LNSMKKLTHIAVSVTGTIFGAPCGHCRQFYQEMRNAPEIEILIKRPKDGIDEFMSLKSLM 140
Query: 142 PDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET--ENPKE--RLKYAALEAANKSH 197
P+RFGP+ +L +D LLLE N + + PE +P++ K AL AANKS+
Sbjct: 141 PERFGPDSILPEDASLLLEQRDNSLVLS-----DPEEICSDPEDCSHTKCRALAAANKSY 195
Query: 198 APYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERI 257
APYSKCPSGVA++ C G +YKG Y+ES AYNPSLGPV+AALV ++A GGG + I
Sbjct: 196 APYSKCPSGVALI-CGGEVYKGWYIESVAYNPSLGPVEAALVDFVAR----GGGKEFNEI 250
Query: 258 VAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
LVE +D V QE AR L I+PKC+F V HC
Sbjct: 251 TEVVLVEMKDVKVSQEATARTFLDKIAPKCDFKVLHC 287
>gi|4836445|gb|AAD30443.1|AF121877_3 DesC [Arabidopsis thaliana]
Length = 308
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/310 (49%), Positives = 196/310 (63%), Gaps = 21/310 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EA S G+T LP L++ A +LAR PISK+ VGAVG SSGR++L
Sbjct: 5 DKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRVYL 60
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVEFPGLPLH SIH EQFL+TNL LN+E L+ LAV+ APCG+CRQFL E
Sbjct: 61 GVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFLME 120
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
N DI I + S + E + L LLP RF P+D+L K PLLLE N ++ +
Sbjct: 121 TSNELDIKILLKSKHEAEGSFSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTE 180
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY++ PSGVA+ D EG Y+G Y+ES AY+PSLGP
Sbjct: 181 EICSSDC--SHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSLGP 238
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++A G G+ +IV A LVEK +A V QE A+++L I +P C+F VF
Sbjct: 239 VQAALVDFVAR----SRGKGFNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVF 294
Query: 293 HC--GCKKSC 300
HC G K C
Sbjct: 295 HCYVGSPKKC 304
>gi|67633768|gb|AAY78808.1| putative cytidine deaminase/cytidine aminohydrolase [Arabidopsis
thaliana]
Length = 307
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 193/302 (63%), Gaps = 19/302 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EA S G+T LP L++ A +LAR PISK+ VGAVG SSGR++L
Sbjct: 5 DKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRVYL 60
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVEFPGLPLH SIH EQFL+TNL LN+E L+ LAV+ APCG+CRQFL E
Sbjct: 61 GVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFLME 120
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
N DI I + S + E + L LLP RF P+D+L K PLLLE N ++ +
Sbjct: 121 TSNELDIKILLKSKHEAEGSFSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTE 180
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY++ PSGVA+ D EG Y+G Y+ES AY+PSLGP
Sbjct: 181 EICSSDC--SHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSLGP 238
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++A G G+ +IV A LVEK +A V QE A+++L I +P C+F VF
Sbjct: 239 VQAALVDFVAR----SRGKGFNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVF 294
Query: 293 HC 294
HC
Sbjct: 295 HC 296
>gi|3818574|gb|AAC69565.1| cytidine deaminase 7 [Arabidopsis thaliana]
Length = 329
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 193/302 (63%), Gaps = 19/302 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EA S G+T LP L++ A +LAR PISK+ VGAVG SSGR++L
Sbjct: 27 DKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRVYL 82
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVEFPGLPLH SIH EQFL+TNL LN+E L+ LAV+ APCG+CRQFL E
Sbjct: 83 GVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFLME 142
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
N DI I + S + E + L LLP RF P+D+L K PLLLE N ++ +
Sbjct: 143 TSNELDIKILLKSKHEAEGSFSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTE 202
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY++ PSGVA+ D EG Y+G Y+ES AY+PSLGP
Sbjct: 203 EICSSDC--SHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSLGP 260
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++A G G+ +IV A LVEK +A V QE A+++L I +P C+F VF
Sbjct: 261 VQAALVDFVAR----SRGKGFNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVF 316
Query: 293 HC 294
HC
Sbjct: 317 HC 318
>gi|15233625|ref|NP_194689.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|5123554|emb|CAB45320.1| cytidine deaminase 7 [Arabidopsis thaliana]
gi|7269859|emb|CAB79718.1| cytidine deaminase 7 [Arabidopsis thaliana]
gi|332660250|gb|AEE85650.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 307
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 193/302 (63%), Gaps = 19/302 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EA S G+T LP L++ A +LAR PISK+ VGAVG SSGR++L
Sbjct: 5 DKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRVYL 60
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVEFPGLPLH SIH EQFL+TNL LN+E L+ LAV+ APCG+CRQFL E
Sbjct: 61 GVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFLME 120
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
N DI I + S + E + L LLP RF P+D+L K PLLLE N ++ +
Sbjct: 121 TSNELDIKILLKSKHEAEGSFSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTE 180
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY++ PSGVA+ D EG Y+G Y+ES AY+PSLGP
Sbjct: 181 EICSSDC--SHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSLGP 238
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++A G G+ +IV A LVEK +A V QE A+++L I +P C+F VF
Sbjct: 239 VQAALVDFVAR----SRGKGFNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVF 294
Query: 293 HC 294
HC
Sbjct: 295 HC 296
>gi|3818577|gb|AAC69568.1| cytidine deaminase 3 [Arabidopsis thaliana]
Length = 322
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 192/302 (63%), Gaps = 19/302 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EAES G+T LP L+ A +LA PISK+ VGAVG SGRI+L
Sbjct: 4 DQYKFVFTAKEAES----EGVTEPMRLPNLIGKAMSLALAPISKYKVGAVGRARSGRIYL 59
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVE PGLPLH SIHAEQFL+TNL LN+E L LAV+ APCG+CRQFL E
Sbjct: 60 GVNVELPGLPLHHSIHAEQFLVTNLALNSEKGLHLLAVTISTDGNDFGAPCGNCRQFLME 119
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ +I I + S + E + L LLPDRF P+D+L K PLLLE N +S +
Sbjct: 120 ISKALNIKILLKSKHEAEGSFKSLRLLLPDRFSPDDVLPKGSPLLLEKRHNCLSLSGSAE 179
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY+ PSGVA+ D +GN Y+G Y+ES A +PSLGP
Sbjct: 180 EICSSDC--SHLKCKALAAANNSFSPYTNSPSGVALQDDDGNWYRGWYIESVASSPSLGP 237
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++A G G G+++IV A LVEK++A V QE A ++L I +P C+F VF
Sbjct: 238 VQAALVDFVAR----GLGKGFDKIVEAVLVEKKNARVSQERTAEMILDTIAAPNCDFKVF 293
Query: 293 HC 294
HC
Sbjct: 294 HC 295
>gi|168067281|ref|XP_001785550.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662827|gb|EDQ49633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 291
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 192/292 (65%), Gaps = 7/292 (2%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FVI+ A+A + S L V L +L K LAR PISKF VGAVGLG SGRIFLG N+
Sbjct: 4 FVIDVAKAGKLRHASRLGVEPFLASLAKPTADLARAPISKFQVGAVGLGVSGRIFLGVNL 63
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
EFP LPL+ S+HAEQFL+ N + + E RL +AVSAAPCGHCRQFLQELR+ DI + IT
Sbjct: 64 EFPKLPLNHSVHAEQFLVANALQHGEKRLVFIAVSAAPCGHCRQFLQELRDAGDIRLLIT 123
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+ + + PLS+ LP RFGP+DL+ ++ PLLLE+ N + + + ++ L
Sbjct: 124 --DGKDPQVRPLSYFLPHRFGPDDLMSRNFPLLLESRSNDLILASFGAWLRDNKHSLVDL 181
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
K AA AAN S+APYS+CPSG +++ +G +Y GSY+ESAAYNP L +QAA+VA++
Sbjct: 182 KLAAFAAANASYAPYSRCPSGASLVTRKGQVYSGSYIESAAYNPGLPALQAAIVAFIC-- 239
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCK 297
GGGG Y+ I +VE++ A+VR ARL LQ I+P+ F+ F +
Sbjct: 240 ---GGGGAYDEIDTVIIVERKGALVRHAPTARLALQSIAPQAAFHHFEVDVQ 288
>gi|297803080|ref|XP_002869424.1| hypothetical protein ARALYDRAFT_491800 [Arabidopsis lyrata subsp.
lyrata]
gi|297315260|gb|EFH45683.1| hypothetical protein ARALYDRAFT_491800 [Arabidopsis lyrata subsp.
lyrata]
Length = 309
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/302 (48%), Positives = 192/302 (63%), Gaps = 19/302 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EA S G+T LP L++ A +LAR ISK+ +GAVG SSGR++L
Sbjct: 4 DKYKFVFTANEAAS----EGVTEPIRLPKLIRKAMSLARGQISKYKIGAVGRASSGRVYL 59
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NV+FPGLPLH SIH EQFL+TNL LN E L+ LAV+ APCG+CRQFL E
Sbjct: 60 GVNVDFPGLPLHHSIHPEQFLVTNLALNFEKGLRQLAVAISNDCIEFGAPCGNCRQFLME 119
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
N DI I + S + E + L LLP RF P+D+L K PLLLE N + + G
Sbjct: 120 TSNEVDIKILLKSKHEAEGSFGKLKLLLPYRFSPDDVLPKGSPLLLEKRDNCLILSRSAG 179
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ LK AL AAN S +PY+ PSGVA+ D +G +Y+G Y+ES AY+PSLGP
Sbjct: 180 EICSSDC--SHLKCKALAAANNSFSPYTDSPSGVALRDEDGILYRGWYIESVAYSPSLGP 237
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++A G G+++IV A LVEK +A V QE A+++L I +P C+F VF
Sbjct: 238 VQAALVDFVAR----SRGKGFDKIVEAVLVEKNNARVSQEGMAKMILDTIAAPNCDFKVF 293
Query: 293 HC 294
HC
Sbjct: 294 HC 295
>gi|226509860|ref|NP_001152163.1| CDA1 [Zea mays]
gi|195653373|gb|ACG46154.1| CDA1 [Zea mays]
Length = 312
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/273 (52%), Positives = 182/273 (66%), Gaps = 9/273 (3%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP LV SA AR PIS+F VGAVGLG+SGR++ G N+EF GLPL S+HAEQFL
Sbjct: 41 TVQDLLPLLVPSAMERARAPISRFRVGAVGLGASGRVYAGVNLEFRGLPLCHSVHAEQFL 100
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNER--KYHPLSHL 140
+ N EP L+ +AVS PCGHCRQFLQE+R + + I +TS + R ++ L+ L
Sbjct: 101 VANAAAAGEPALRAVAVSHMPCGHCRQFLQEMRGAAAVQILVTSDAAEGRAPEWRALASL 160
Query: 141 LPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPY 200
LP FGP DLL +DV L+LE H N + + NG + RL+ AA AA +HAPY
Sbjct: 161 LPRPFGPRDLLPEDVALVLEPHGNDLGGPVANGF--ARGDLDARLREAAEAAARAAHAPY 218
Query: 201 SKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260
SKCPSG A+ D +G IY G +ESAAYNP+LGPVQAA++ +AAGG G +VAA
Sbjct: 219 SKCPSGFAVADGDGRIYAGGCLESAAYNPTLGPVQAAIIGMVAAGGGPAG-----DVVAA 273
Query: 261 ALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
ALVEKE A V QE AR+ L+ ++P+ F+V++
Sbjct: 274 ALVEKERAEVAQEATARIFLEAVAPRATFHVYN 306
>gi|414880764|tpg|DAA57895.1| TPA: CDA1 [Zea mays]
Length = 316
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/273 (51%), Positives = 181/273 (66%), Gaps = 9/273 (3%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP LV SA+ A+ PIS F VGAVGLG+SGR+++G N+EF GLPL S+HAEQFL
Sbjct: 45 TVQDLLPLLVPSARKRAQVPISGFPVGAVGLGASGRVYVGVNLEFRGLPLCHSVHAEQFL 104
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN--ERKYHPLSHL 140
+ N EP L+ +AVS PCGHCRQFLQE+R + I I +TS + ++ ++ L
Sbjct: 105 VANAAAAGEPELRAVAVSHMPCGHCRQFLQEIRGAASIRILVTSDAAEGCAPEWRTVASL 164
Query: 141 LPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPY 200
L FGP+DLL DVPL+LE H N + + NG + RL+ AA AA +HAPY
Sbjct: 165 LLRPFGPHDLLPGDVPLVLEAHDNALGDPVANGL--ARSDLDARLRQAAEAAARAAHAPY 222
Query: 201 SKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260
SKCPSG A+ D +G IY G +ESAAYNP+LGPVQAA++A +AAGG G +VAA
Sbjct: 223 SKCPSGFAVADGDGRIYAGGCLESAAYNPTLGPVQAAIIAMVAAGGCSAG-----DVVAA 277
Query: 261 ALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
ALVEKE A V QE AR+ L ++P F+V++
Sbjct: 278 ALVEKEQASVAQEATARIFLDAVAPHASFHVYN 310
>gi|297803078|ref|XP_002869423.1| hypothetical protein ARALYDRAFT_491799 [Arabidopsis lyrata subsp.
lyrata]
gi|297315259|gb|EFH45682.1| hypothetical protein ARALYDRAFT_491799 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 185/302 (61%), Gaps = 26/302 (8%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
+R +FV A EA + G+T LP L++ A +LAR PISK+ VGAVG SSGR++L
Sbjct: 26 DRYKFVFTANEAAA----EGVTEPIRLPNLIRKAMSLARAPISKYKVGAVGRTSSGRVYL 81
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NV+FPGLPLH SIHAEQFL+TNL LN+E L LAV+ PCGHCRQFL E
Sbjct: 82 GVNVDFPGLPLHHSIHAEQFLVTNLALNSEKDLCELAVAISVDGKEFGTPCGHCRQFLME 141
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ N DI I ++ + L HLLP ++L K P LLE N ++ + G
Sbjct: 142 MSNALDIKI-MSKPKHEAGSFSSLRHLLP------NVLPKGSPFLLEKRDNCLTLSGPAG 194
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I ++ L AL AAN S +PY++ PSGVA++D +G Y G Y+ES A NPS GP
Sbjct: 195 EICSSDC--SHLMCKALAAANNSFSPYTESPSGVALLDNDGKWYYGWYIESVASNPSFGP 252
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVF 292
VQAALV ++ + G + +IV A LVEK +A+V QE A+++L I +P C+F VF
Sbjct: 253 VQAALVDFV----TRSRGKRFNKIVRAVLVEKNNAIVSQERTAKMILDTIAAPNCDFKVF 308
Query: 293 HC 294
HC
Sbjct: 309 HC 310
>gi|357136157|ref|XP_003569672.1| PREDICTED: cytidine deaminase-like [Brachypodium distachyon]
Length = 311
Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 150/299 (50%), Positives = 194/299 (64%), Gaps = 14/299 (4%)
Query: 1 MERPRFVIEAAEAESMAQKSGL-TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRI 59
+E P FV+ A EAE A +G+ TV LLP L+ SA ARPPIS+F VGAVGLG SGR+
Sbjct: 13 VEMPGFVMSAEEAERAAAAAGVDTVEDLLPLLIPSAMRRARPPISRFPVGAVGLGESGRV 72
Query: 60 FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSD 119
+ G N+EF GLPL QS+HAEQFLI N E L+ +AVS PCGHCRQFLQE+R +
Sbjct: 73 YAGVNLEFRGLPLSQSVHAEQFLIANAAAAGETALRSIAVSHMPCGHCRQFLQEIRGAAG 132
Query: 120 INICITS--INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMS----FNLCNG 173
I I +TS ++ E ++ ++ LL FGP+DLL KD PL+LE H N + + NG
Sbjct: 133 ILILVTSDAVDGCEPEWRTVASLLLRPFGPHDLLPKDAPLVLEPHDNPIGDPVEAVVANG 192
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+ RL+ AA AA +HAPYS CPSG A+ D EG ++ G +ESAAYNP+LGP
Sbjct: 193 F--AAGGLEARLREAAEAAARAAHAPYSGCPSGFAVADGEGRVHAGGCLESAAYNPTLGP 250
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
VQ A++A +AAGG G +VAAALVEK+ AVV QE AR+ L ++P+ +V+
Sbjct: 251 VQTAIIAMVAAGGGPAG-----DVVAAALVEKDGAVVAQEAMARIFLAAVAPQASLHVY 304
>gi|15233628|ref|NP_194691.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|4836447|gb|AAD30445.1|AF121877_5 DesE [Arabidopsis thaliana]
gi|3096908|emb|CAA06710.1| cytidine deaminase [Arabidopsis thaliana]
gi|5123556|emb|CAB45322.1| cytidine deaminase 2 (CDA2) [Arabidopsis thaliana]
gi|7269861|emb|CAB79720.1| cytidine deaminase 2 (CDA2) [Arabidopsis thaliana]
gi|91806748|gb|ABE66101.1| cytidine deaminase/cytidine aminohydrolase [Arabidopsis thaliana]
gi|332660252|gb|AEE85652.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 337
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 182/301 (60%), Gaps = 25/301 (8%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
+R +FV A EA G+T LP L++ A LAR PISK+ VGAVG SSGR++L
Sbjct: 26 DRFKFVFTANEA----ALEGVTDPIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVYL 81
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NV+FPGLPLH SIHAEQFL+TNL LN E L LAV+ PCG+C QFL E
Sbjct: 82 GVNVDFPGLPLHHSIHAEQFLVTNLALNYEKDLCKLAVAISTDGLEFGTPCGNCLQFLME 141
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ N D+ I ++ + L LLP ++L K P LLE N ++ + G
Sbjct: 142 MSNALDMKI-LSKPKHEAGSFSSLRLLLP------NVLPKGSPFLLEKRYNCLTLSGSAG 194
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I + LK AL AAN S +PY++ PSGVA++D +GN Y+G Y+ES A NPSLGP
Sbjct: 195 EICSLDC--SHLKRRALAAANNSFSPYTESPSGVALLDNDGNWYRGWYIESVASNPSLGP 252
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
VQAALV ++A G + +IV A LVEK +A V QE A+++L I+P C+F VFH
Sbjct: 253 VQAALVDFVAR----SRGKMFNKIVQAVLVEKNNASVSQERTAKIILDTIAPNCDFKVFH 308
Query: 294 C 294
C
Sbjct: 309 C 309
>gi|116831409|gb|ABK28657.1| unknown [Arabidopsis thaliana]
Length = 338
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 182/301 (60%), Gaps = 25/301 (8%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
+R +FV A EA G+T LP L++ A LAR PISK+ VGAVG SSGR++L
Sbjct: 26 DRFKFVFTANEA----ALEGVTDPIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVYL 81
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NV+FPGLPLH SIHAEQFL+TNL LN E L LAV+ PCG+C QFL E
Sbjct: 82 GVNVDFPGLPLHHSIHAEQFLVTNLALNYEKDLCKLAVAISTDGLEFGTPCGNCLQFLME 141
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ N D+ I ++ + L LLP ++L K P LLE N ++ + G
Sbjct: 142 MSNALDMKI-LSKPKHEAGSFSSLRLLLP------NVLPKGSPFLLEKRYNCLTLSGSAG 194
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I + LK AL AAN S +PY++ PSGVA++D +GN Y+G Y+ES A NPSLGP
Sbjct: 195 EICSLDC--SHLKRRALAAANNSFSPYTESPSGVALLDNDGNWYRGWYIESVASNPSLGP 252
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
VQAALV ++A G + +IV A LVEK +A V QE A+++L I+P C+F VFH
Sbjct: 253 VQAALVDFVAR----SRGKMFNKIVQAVLVEKNNASVSQERTAKIILDTIAPNCDFKVFH 308
Query: 294 C 294
C
Sbjct: 309 C 309
>gi|5080713|gb|AAC69567.2| cytidine deaminase 2 [Arabidopsis thaliana]
Length = 337
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 181/301 (60%), Gaps = 25/301 (8%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
+R +FV A EA G+T LP L++ A LAR PISK+ VGAVG SSGR++L
Sbjct: 26 DRFKFVFTANEA----ALEGVTDPIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVYL 81
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NV+FPGLPLH SIHAEQFL+TNL LN E L LAV+ PCG+C QFL E
Sbjct: 82 GVNVDFPGLPLHHSIHAEQFLVTNLALNYEKDLCKLAVAISTDGLEFGTPCGNCLQFLME 141
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ N D+ I ++ + L LLP ++L K P LLE N ++ + G
Sbjct: 142 MSNALDMKI-LSKPKHEAGSFSSLRLLLP------NVLPKGSPFLLEKRYNCLTLSGSAG 194
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+I + LK AL AAN S + Y++ PSGVA++D +GN Y+G Y+ES A NPSLGP
Sbjct: 195 EICSLDC--SHLKRRALAAANNSFSTYTESPSGVALLDNDGNWYRGWYIESVASNPSLGP 252
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
VQAALV ++A G + +IV A LVEK +A V QE A+++L I+P C+F VFH
Sbjct: 253 VQAALVDFVAR----SRGKMFNKIVQAVLVEKNNASVSQERTAKIILDTIAPNCDFKVFH 308
Query: 294 C 294
C
Sbjct: 309 C 309
>gi|297803076|ref|XP_002869422.1| hypothetical protein ARALYDRAFT_913538 [Arabidopsis lyrata subsp.
lyrata]
gi|297315258|gb|EFH45681.1| hypothetical protein ARALYDRAFT_913538 [Arabidopsis lyrata subsp.
lyrata]
Length = 296
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/298 (47%), Positives = 181/298 (60%), Gaps = 29/298 (9%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+FV EA S G+T + LP L++ A+ LA+ PI VGA+G SSGR++LG N
Sbjct: 6 KFVFTNEEAAS----EGVTDHKKLPKLIEKARNLAKVPIK---VGAIGRASSGRVYLGAN 58
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTS 118
VEF GL SI AEQFLI NL LN E +L HLAVS PC C FLQE+ +
Sbjct: 59 VEFEGLSPSLSIQAEQFLIANLALNLESKLTHLAVSNNGTVFHDPCYRCTHFLQEMTDAP 118
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMS-FNLCNGQIPE 177
I I I + N + + L +PD+FGP +L + LLL N ++ FN
Sbjct: 119 QIEILIKNRNDEDGSFKSLESHMPDKFGPESILPAEPSLLLVECDNRLALFN-------- 170
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
N LK AL+AA KS+AP+SKCPSGVA++ CEG +Y+G Y+E+ AYN SLGPVQAA
Sbjct: 171 -SNLYPLLKLVALQAAKKSYAPHSKCPSGVALV-CEGKVYRGWYIETVAYNISLGPVQAA 228
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVFHC 294
LV ++A G G G+++I A LVEK+DA VRQE AR LL+ I +P C+F VFHC
Sbjct: 229 LVDFMAR----GEGKGFDKITRAVLVEKKDAKVRQEDTARTLLEKIAAPNCDFKVFHC 282
>gi|242058493|ref|XP_002458392.1| hypothetical protein SORBIDRAFT_03g032720 [Sorghum bicolor]
gi|241930367|gb|EES03512.1| hypothetical protein SORBIDRAFT_03g032720 [Sorghum bicolor]
Length = 316
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 182/276 (65%), Gaps = 13/276 (4%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP L+ SA+ A+ PIS F VGAVGLG+SGR+++G N+EF G+PL S+HAEQFL
Sbjct: 41 TVQDLLPLLIPSARKRAQVPISDFQVGAVGLGASGRVYVGVNLEFRGVPLCHSVHAEQFL 100
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNER--KYHPLSHL 140
+ N E L+ +AVS PCGHCRQFLQE+R + I I +TS R ++ ++ L
Sbjct: 101 VANAAAAGESALRAVAVSHMPCGHCRQFLQEIRGAAGIQILVTSDAEQGRAPEWRTVASL 160
Query: 141 LPDRFGPNDLLDKDVPLLLETHQNGMSFNL----CNGQIPETENPKERLKYAALEAANKS 196
L FGP+DLLD++VPL+LE H N + + NG P + RL+ AA AA +
Sbjct: 161 LLRPFGPHDLLDENVPLVLEAHDNALGDPVVAAAANGFAPGDLD--ARLRDAAEAAARAA 218
Query: 197 HAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYER 256
HAPYS+CPSG A+ D +G IY G +ESAAYNP+LGPVQAA++A +AAGG G
Sbjct: 219 HAPYSQCPSGFAVADGDGRIYAGGCLESAAYNPTLGPVQAAIIAMVAAGGGPAG-----D 273
Query: 257 IVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
+VAAALVEKE A V QE AR+ L ++P F+V+
Sbjct: 274 VVAAALVEKEQAAVAQEATARIFLDAMAPHASFHVY 309
>gi|226491263|ref|NP_001149979.1| CDA1 [Zea mays]
gi|195635855|gb|ACG37396.1| CDA1 [Zea mays]
Length = 314
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/271 (52%), Positives = 180/271 (66%), Gaps = 9/271 (3%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP LV+SA+ A+ PIS F VGAVGLG+SGR+++G N+EF GLPL S+HAEQFL
Sbjct: 43 TVQDLLPLLVQSARKRAQVPISGFPVGAVGLGASGRVYVGVNLEFRGLPLCHSVHAEQFL 102
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN--ERKYHPLSHL 140
+ N EP L+ +AVS PCGHCRQFLQE+R + I I +TS + ++ ++ L
Sbjct: 103 VANAAAAGEPELRAVAVSHMPCGHCRQFLQEIRGAASIRILVTSDAAEGCAPEWRTVASL 162
Query: 141 LPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPY 200
L FGPNDLL DVPL+LE H N + + NG + RL+ AA AA +HAPY
Sbjct: 163 LLRPFGPNDLLPGDVPLVLEAHDNALGDPVANGL--ARGDLDARLRQAAEAAARAAHAPY 220
Query: 201 SKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260
SKCPSG A+ D +G IY G +ESAAYNP+LGPVQAA++A +AA GGG +VAA
Sbjct: 221 SKCPSGFAVADGDGRIYAGGCLESAAYNPTLGPVQAAIIAMVAA-----GGGPAVDVVAA 275
Query: 261 ALVEKEDAVVRQEHAARLLLQVISPKCEFNV 291
ALVEKE A V QE AR+ L ++P F+V
Sbjct: 276 ALVEKEQASVAQEATARIFLDAVAPHASFHV 306
>gi|15233632|ref|NP_194693.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|4836449|gb|AAD30447.1|AF121877_7 DesG [Arabidopsis thaliana]
gi|5123558|emb|CAB45324.1| cytidine deaminase 5 (CDA5) [Arabidopsis thaliana]
gi|7269863|emb|CAB79722.1| cytidine deaminase 5 (CDA5) [Arabidopsis thaliana]
gi|332660254|gb|AEE85654.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 346
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 179/300 (59%), Gaps = 22/300 (7%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+FV A +A S G+T + LP L++ A+ L + P SK VGAVG SSGR +LG N
Sbjct: 6 KFVFTAEQAAS----EGVTDHKKLPKLIRKARNLVKAP-SK--VGAVGRASSGRFYLGVN 58
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTS 118
VEF GL H SIHAEQFLI NL LN+EP+L HLAVS PC C +FL+E+ N
Sbjct: 59 VEFKGLLPHFSIHAEQFLIANLALNSEPKLTHLAVSDNGTVFQDPCYDCTRFLKEINNAH 118
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF---NLCNGQI 175
I I I + + + + L +PD FG +L + LLL N ++ + G I
Sbjct: 119 QIEILIKNAHGRDGSFKSLESHMPDEFGSESILSAEPSLLLMERDNCLALIDEDSAAGGI 178
Query: 176 PETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQ 235
+ LK AL+AANKS+APY KCPSGVA+ CEG +Y G Y+E+ SLGPVQ
Sbjct: 179 SSNADLCSFLKLEALKAANKSYAPYRKCPSGVALF-CEGEVYAGWYIETVDRTISLGPVQ 237
Query: 236 AALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNVFHC 294
AALV ++A G G G+++I A LVEK+DA V QE AR LL+ I +P C+F VFHC
Sbjct: 238 AALVDFIAR----GEGKGFDKITGAVLVEKKDAKVGQEDTARKLLEKIAAPNCDFKVFHC 293
>gi|3818578|gb|AAC69569.1| cytidine deaminase 5 [Arabidopsis thaliana]
Length = 389
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/303 (45%), Positives = 180/303 (59%), Gaps = 22/303 (7%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A +A S G+T + LP L++ A+ L + P SK VGAVG SSGR +L
Sbjct: 3 QQYKFVFTAEQAAS----EGVTDHKKLPKLIRKARNLVKAP-SK--VGAVGRASSGRFYL 55
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELR 115
G NVEF GL H SIHAEQFLI NL LN+EP+L HLAVS PC C FL+E+
Sbjct: 56 GVNVEFKGLLPHFSIHAEQFLIANLALNSEPKLTHLAVSHNGTVFQDPCYDCTHFLKEIN 115
Query: 116 NTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF---NLCN 172
N I I I + + + + L +PD FG +L + LLL N ++ +
Sbjct: 116 NAHQIEILIKNAHGRDGSFKSLESHMPDEFGSESILSAEPSLLLMERDNCLALIDEDSAA 175
Query: 173 GQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLG 232
G I + LK AL+AANKS+APY KCPSGVA+ CEG +Y G Y+E+ SLG
Sbjct: 176 GGISSNADLCSFLKLEALKAANKSYAPYRKCPSGVALF-CEGEVYAGWYIETVDRTISLG 234
Query: 233 PVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI-SPKCEFNV 291
PVQAALV ++A G G G+++I A LVEK+DA V QE AR LL+ I +P C+F V
Sbjct: 235 PVQAALVDFIAR----GEGKGFDKITGAVLVEKKDAKVGQEDTARKLLEKIAAPNCDFKV 290
Query: 292 FHC 294
FHC
Sbjct: 291 FHC 293
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
+ I A LVEK+DA+V QE +LL ++ +P C+F V HC
Sbjct: 342 DWITGAVLVEKKDAMVGQE--GKLLEEIAAPNCDFKVSHC 379
>gi|125527469|gb|EAY75583.1| hypothetical protein OsI_03488 [Oryza sativa Indica Group]
Length = 312
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/275 (50%), Positives = 180/275 (65%), Gaps = 11/275 (4%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP LV SA AR PIS+F VGAVGLG+SGR++ G N+EF GLPL S+HAEQFL
Sbjct: 39 TVEDLLPLLVPSAMRRARAPISRFPVGAVGLGASGRVYAGVNLEFRGLPLSHSVHAEQFL 98
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN--ERKYHPLSHL 140
+ N E L+ +AVS PCGHCRQFLQE+R I I +TS + ++ ++ L
Sbjct: 99 VVNAAAAGESELRAVAVSHMPCGHCRQFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASL 158
Query: 141 LPDRFGPNDLLDKDVPLLLETHQN--GMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP FGP+DLL K VPL+LE H N G ++ NG + + RL+ AA AA +HA
Sbjct: 159 LPRPFGPHDLLPKHVPLVLEPHDNPLGEPASVANGF--AHGDLEARLREAAEAAARAAHA 216
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PYS+CPSG A+ D EG +Y G +ESAAYNP+LGPVQAA++ G GGG +V
Sbjct: 217 PYSECPSGFAVADGEGKVYAGGCLESAAYNPTLGPVQAAII-----GMVAAGGGAAGDVV 271
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
AAALVEKE A+V QE AR+ L ++P+ F+V++
Sbjct: 272 AAALVEKEAALVSQEATARIFLAAVAPQATFHVYN 306
>gi|115439543|ref|NP_001044051.1| Os01g0712700 [Oryza sativa Japonica Group]
gi|20146337|dbj|BAB89118.1| cytidine/deoxycytidine deaminase-like [Oryza sativa Japonica Group]
gi|113533582|dbj|BAF05965.1| Os01g0712700 [Oryza sativa Japonica Group]
gi|215769440|dbj|BAH01669.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 312
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 178/275 (64%), Gaps = 11/275 (4%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP LV SA AR PIS+F VGAVGLG+SGR++ G N+EF GLPL S+HAEQFL
Sbjct: 39 TVEDLLPLLVPSAMRRARAPISRFPVGAVGLGASGRVYAGVNLEFRGLPLSHSVHAEQFL 98
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN--ERKYHPLSHL 140
+ N E L+ +AVS PCGHCRQFLQE+R I I +TS + ++ ++ L
Sbjct: 99 VVNAAAAGESELRAVAVSHMPCGHCRQFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASL 158
Query: 141 LPDRFGPNDLLDKDVPLLLETHQN--GMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP FGP+DLL K VPL+LE H N G + NG + + RL+ AA AA +HA
Sbjct: 159 LPRPFGPHDLLPKHVPLVLEPHDNPLGEPAAVANGF--AHGDLEARLREAAEAAARAAHA 216
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PYS+CPSG A+ D EG +Y G +ESAAYNP+LGPVQAA++ G GGG +V
Sbjct: 217 PYSECPSGFAVADGEGKVYAGGCLESAAYNPTLGPVQAAII-----GMVAAGGGAAGDVV 271
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
AAALVEKE +V QE AR+ L ++P+ F+V++
Sbjct: 272 AAALVEKEAGLVSQEATARIFLAAVAPQATFHVYN 306
>gi|282891543|ref|ZP_06300034.1| hypothetical protein pah_c180o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498511|gb|EFB40839.1| hypothetical protein pah_c180o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 283
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 168/287 (58%), Gaps = 26/287 (9%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
RFVI A + + + + ++ +L+ L+ A+ ARP IS F VGAVGLG +G ++LG N
Sbjct: 19 RFVIPAEKVDQITHELNISKEELMLRLISIAKPFARPSISHFQVGAVGLGKNGNLYLGVN 78
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EFPG PL+Q++H EQFLI N + E L +AVSAAPCGHCRQFL E+ + + + I
Sbjct: 79 LEFPGFPLNQTVHGEQFLIVNARNHGEEGLVAIAVSAAPCGHCRQFLNEI-GSEKMQVWI 137
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKER 184
+ R L+ LLP+ FGP DL G+S L + +
Sbjct: 138 LN-----RPPMELAALLPESFGPKDL--------------GVSGGLMTQAENKCLDADCS 178
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
++ A+ AAN S+APYS+ SG+AI +GNIY+GSY+E+AA+NPSL P QAALVA LA
Sbjct: 179 VRANAILAANSSYAPYSQAFSGIAIQTQDGNIYRGSYLENAAFNPSLSPFQAALVALLAD 238
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNV 291
S Y+ I LVEK DAV+ Q LLL+ I+P F V
Sbjct: 239 MHS------YDDIKEVILVEKADAVISQVVMTELLLKKIAPHAVFKV 279
>gi|5080714|gb|AAD39263.1| cytidine deaminase 8 [Arabidopsis thaliana]
Length = 293
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 135/309 (43%), Positives = 174/309 (56%), Gaps = 32/309 (10%)
Query: 1 MERP-RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRI 59
M +P RF++ E ES G Q+L L+ A R IS V AVG GSSGR
Sbjct: 1 MAQPMRFMLNQIETESY----GAFTPQILSPLINHAIPHTRAQISGSPVVAVGGGSSGRT 56
Query: 60 FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQE 113
F G NVE PGLPL SIHAEQFLI NL L+ E +L+ +A+S PCGHC Q LQ+
Sbjct: 57 FFGVNVELPGLPLDHSIHAEQFLIANLALHFEQKLECIAISTNGYYFQEPCGHCCQLLQK 116
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQN-------GM 166
+R+ SD I +T+ + Y LS LP F + +VP LLE + N +
Sbjct: 117 IRDMSDTKILLTNPTGQKGTYMNLSTFLPQGF----ISLANVPRLLERNFNYIELINHSL 172
Query: 167 SFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
++C+ L AL+AA S+AP SKCPSGVA++D G +Y G YMES A
Sbjct: 173 YMDICS-----YSEHCNHLNCRALKAATISYAPDSKCPSGVALIDHRGKVYSGGYMESVA 227
Query: 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-P 285
+N SLGPVQAALV ++A G G ++ IV A LVEK+ V+ QE AR++L+ I+ P
Sbjct: 228 HNTSLGPVQAALVDFVA----NGDGQEFKNIVEAVLVEKKCGVLSQEATARMILEKIADP 283
Query: 286 KCEFNVFHC 294
C F V HC
Sbjct: 284 DCIFRVLHC 292
>gi|159471161|ref|XP_001693725.1| cytidine deaminase [Chlamydomonas reinhardtii]
gi|158283228|gb|EDP08979.1| cytidine deaminase [Chlamydomonas reinhardtii]
Length = 365
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 122/294 (41%), Positives = 170/294 (57%), Gaps = 11/294 (3%)
Query: 5 RFVIEAAEAESM-AQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
RFV+ AAE + + A G + ++L +L+ A LARPPIS +HVGAV L SG +++G
Sbjct: 72 RFVLPAAEWQQLLASHPGKSPEEVLFSLITPASKLARPPISGYHVGAVALAGSGNVYVGV 131
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EFPG L+ SIH EQ+L+ N + E ++ LAVSAAPCGHCRQF E+++ D+
Sbjct: 132 NIEFPGTALNNSIHGEQYLLVNCLHAGESSIRALAVSAAPCGHCRQFYSEIKDADDLEF- 190
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
I + + L+ LLP+RFGP DL D+ PLLLE N ++++ +
Sbjct: 191 ---IFGKDARPKFLNDLLPERFGPADLQDEPFPLLLEQQSNSVAWSPEAEAAMAEAGRRG 247
Query: 184 RLKYA-----ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+A AL A K +APY++C SG AI+ G ++ G Y+ESAAYNPS+ P AA+
Sbjct: 248 DSAFAQAAGEALAEAQKCYAPYTRCHSGAAIITTSGGVHSGGYIESAAYNPSMSPFHAAV 307
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
VA + AGG G G I L E+ DA V+ RLLLQ ++P V
Sbjct: 308 VAAVTAGGLPDGYGQV-CIREVVLAERPDAPVQHAANIRLLLQAVAPAARLTVL 360
>gi|338174875|ref|YP_004651685.1| cytidine deaminase [Parachlamydia acanthamoebae UV-7]
gi|336479233|emb|CCB85831.1| cytidine deaminase [Parachlamydia acanthamoebae UV-7]
Length = 297
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 167/287 (58%), Gaps = 26/287 (9%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
RFVI A + + + + ++ +L+ L+ A+ ARP IS F VGAVGLG +G ++LG N
Sbjct: 33 RFVIPAEKVDQITHELNISKEELMLRLISIAKPFARPLISHFQVGAVGLGKNGNLYLGVN 92
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EFPG PL+Q++H EQFLI N + E L +AVSAAPCGHCRQFL E+ + + + I
Sbjct: 93 LEFPGFPLNQTVHGEQFLIVNARNHGEEGLVAIAVSAAPCGHCRQFLNEI-GSEKMQVWI 151
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKER 184
+ R L+ LLP+ FGP DL G+S L + +
Sbjct: 152 LN-----RPPMELAALLPESFGPKDL--------------GVSGGLMTQAENKCLDADCS 192
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
++ A+ AAN S+APYS+ SG+AI +GNIY+GSY+E+AA+NPSL P QAALVA LA
Sbjct: 193 VRANAILAANSSYAPYSQAFSGIAIQTQDGNIYRGSYLENAAFNPSLSPFQAALVALLAD 252
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNV 291
S Y+ I LVEK D V+ Q LLL+ I+P F V
Sbjct: 253 MHS------YDDIKEVILVEKADXVISQVVMTELLLKKIAPHAVFKV 293
>gi|15233622|ref|NP_194686.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|4836443|gb|AAD30441.1|AF121877_1 DesA [Arabidopsis thaliana]
gi|5123551|emb|CAB45317.1| cytidine deaminase-like protein [Arabidopsis thaliana]
gi|7269856|emb|CAB79715.1| cytidine deaminase-like protein [Arabidopsis thaliana]
gi|332660246|gb|AEE85646.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 293
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/304 (43%), Positives = 169/304 (55%), Gaps = 22/304 (7%)
Query: 1 MERP-RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRI 59
M +P RF++ E ES G Q L L+ A R IS V AVG GSSGR
Sbjct: 1 MAQPMRFMLNHIETESY----GAFTPQNLSPLINRAIPHTRAQISGSPVVAVGRGSSGRT 56
Query: 60 FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQE 113
F G NVE PGLPL SIHAEQFL+ NL L+ E +L+ +A+S PCGHC Q L +
Sbjct: 57 FFGVNVELPGLPLDHSIHAEQFLLANLALHFEQKLECIAISTNGYYFQEPCGHCCQLLHK 116
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF--NLC 171
+R+ SD I +T+ + Y LS LP + +VP LLE + N + +
Sbjct: 117 IRDMSDTKILLTNPTGQKGTYMNLSTFLPQGL----ISQANVPRLLERNFNCIELINHSL 172
Query: 172 NGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
I L AL+AA S+AP SKCPSGVA++D G +Y G YMES A+N SL
Sbjct: 173 YMDICSYSEHCNHLNCRALKAATISYAPDSKCPSGVALIDHRGKVYSGGYMESVAHNTSL 232
Query: 232 GPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFN 290
GPVQAALV ++A G G ++ IV A LVEK+ V+ QE AR++L+ I+ P C F
Sbjct: 233 GPVQAALVDFVA----NGDGQEFKNIVEAVLVEKKCGVLSQEATARMILEKIADPDCIFR 288
Query: 291 VFHC 294
V HC
Sbjct: 289 VLHC 292
>gi|297788466|ref|XP_002862332.1| hypothetical protein ARALYDRAFT_920886 [Arabidopsis lyrata subsp.
lyrata]
gi|297307736|gb|EFH38590.1| hypothetical protein ARALYDRAFT_920886 [Arabidopsis lyrata subsp.
lyrata]
Length = 299
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 169/304 (55%), Gaps = 18/304 (5%)
Query: 1 MERP-RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRI 59
M +P RF++ E ES G + + L L+ A AR IS V A+GL SSG+
Sbjct: 1 MAQPFRFMLNQTETESY----GAFIPRNLRPLIDRAIPHARAQISGSPVVAIGLASSGQT 56
Query: 60 FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQE 113
+ G NVE PGLP + SIHAEQFL+ N L+ E +L LA+S APCGHC QFL+E
Sbjct: 57 YFGVNVELPGLPPNYSIHAEQFLVANFALHFELKLIGLAISPNGYYFKAPCGHCCQFLRE 116
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ N SD + IT + L + +VP LLE N + F +
Sbjct: 117 ISNMSDTKVLITGPTGQGETHGTRMLLSTFLILLGTISPGNVPRLLEPSDNSIGFIDSSL 176
Query: 174 QIPETENPK--ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
Q+ N + L AL AA KS+A +SKCPSGVA++D G +Y G +MES A+NPSL
Sbjct: 177 QMDICSNSEHCNHLSCRALRAATKSYARFSKCPSGVALIDRRGTVYSGWFMESVAHNPSL 236
Query: 232 GPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFN 290
GPVQAALV ++ G G ++ IV A LVEK AV+ QE AR++L+ I+ P C F
Sbjct: 237 GPVQAALVDFVV----NGDGQEFKEIVEAVLVEKRGAVLSQEDTARMILEKIADPDCVFR 292
Query: 291 VFHC 294
V HC
Sbjct: 293 VLHC 296
>gi|440792110|gb|ELR13338.1| cytidine and deoxycytidylate deaminase zincbinding region subfamily
protein [Acanthamoeba castellanii str. Neff]
Length = 326
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 176/299 (58%), Gaps = 20/299 (6%)
Query: 6 FVIEAAEAESMAQKSGL-TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
F IE+ ++ Q+ G + L LL ++K A ARPPIS F+VG VGL +G I+ GGN
Sbjct: 45 FFIESKRVAAIMQEMGYESHLDLLHEILKLAARRARPPISSFYVGTVGLSQAGHIYCGGN 104
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EF GL L+ SIH EQ LI L+ E + +V+A PCGHCRQF+ EL + ++ I I
Sbjct: 105 IEFDGLSLNDSIHGEQCLIARLVNADEKGMVCFSVNAPPCGHCRQFINEL-DVGELKIAI 163
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETE-NPKE 183
T + L LLP FGPNDL + + L H + L Q+P + P+
Sbjct: 164 TG-----KGTFSLDQLLPFSFGPNDLGNA---IRLLQHPSYAITTL--QQLPHADPAPEA 213
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
RL A++AA+++++PY++CPSGVA+ +G+ Y+GSY+E+AAYNPSL P+Q+AL
Sbjct: 214 RLVEVAVKAASRAYSPYTECPSGVALRLKDGSTYRGSYIENAAYNPSLPPLQSALT---- 269
Query: 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCG-CKKSCS 301
G G + I A LVE++ A++ QE R LL I+P+ F+V++ C K S
Sbjct: 270 --GLVGDERQWTEIEACVLVERKGALISQEGITRRLLASIAPQASFHVYNIDKCVKETS 326
>gi|307111855|gb|EFN60089.1| hypothetical protein CHLNCDRAFT_18754, partial [Chlorella
variabilis]
Length = 288
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 162/292 (55%), Gaps = 16/292 (5%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+F + E ++ K G+ +LL L+ A LARPPIS FHVGAVGLGSSG +++G N
Sbjct: 1 KFRLAPEEVAALQSKHGVGEDELLSRLLGPAAELARPPISSFHVGAVGLGSSGALYVGVN 60
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EF LPL+ S+HAEQFL+ N + + E ++ L VSAAPCGHCRQF EL +
Sbjct: 61 LEFARLPLYNSVHAEQFLLVNALHHGEREIRQLVVSAAPCGHCRQFYSELACAESVRFSF 120
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLL-DKDVPLLLETHQNGMSFNLCNGQIPET---EN 180
N + L LLP RF P DLL D PLLL+ N + ++ + +
Sbjct: 121 QGGN------YSLGQLLPMRFKPADLLPDPATPLLLQPQDNRVQLTATARKLLKARAGDA 174
Query: 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA 240
ER AL AA S++PYS+CPSG+AI+ G +Y G Y+ESAAYNPSL P+Q A+VA
Sbjct: 175 AFERAAAEALAAAVGSYSPYSRCPSGLAIVTQAGGVYSGGYVESAAYNPSLPPLQTAIVA 234
Query: 241 YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
+ G Y + LVE D V+ R+ L+ I+P V
Sbjct: 235 AVIDGMP------YTAVDEVVLVELADGQVQHARTTRVALKKIAPHARLTVL 280
>gi|15233630|ref|NP_194692.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|4836448|gb|AAD30446.1|AF121877_6 DesF [Arabidopsis thaliana]
gi|5123557|emb|CAB45323.1| cytidine deaminase 3 (CDA3) [Arabidopsis thaliana]
gi|7269862|emb|CAB79721.1| cytidine deaminase 3 (CDA3) [Arabidopsis thaliana]
gi|67633770|gb|AAY78809.1| putative cytidine deaminase/cytidine aminohydrolase [Arabidopsis
thaliana]
gi|332660253|gb|AEE85653.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 223
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 138/226 (61%), Gaps = 14/226 (6%)
Query: 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
++ +FV A EAES G+T LP L+ A +LA PISK+ VGAVG SGRI+L
Sbjct: 4 DQYKFVFTAKEAES----EGVTEPMRLPNLIGKAMSLALAPISKYKVGAVGRARSGRIYL 59
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS--------AAPCGHCRQFLQE 113
G NVE PGLPLH SIHAEQFL+TNL LN+E L LAV+ APCG+CRQFL E
Sbjct: 60 GVNVELPGLPLHHSIHAEQFLVTNLALNSEKGLHLLAVTISTDGNDFGAPCGNCRQFLME 119
Query: 114 LRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNG 173
+ +I I + S E + L LLPDRF P+D+L K PLLLE N +S +
Sbjct: 120 ISKALNIKILLKSKYEAEGSFKSLRLLLPDRFSPDDVLPKGSPLLLEKRHNCLSLSGSAE 179
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+I ++ LK AL AAN S +PY+ PSGVA+ D +GN Y+G
Sbjct: 180 EICSSDC--SHLKCKALAAANNSFSPYTNSPSGVALQDDDGNWYRG 223
>gi|356566092|ref|XP_003551269.1| PREDICTED: cytidine deaminase-like [Glycine max]
Length = 220
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 113/164 (68%), Gaps = 8/164 (4%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
RFVI A+EAES ++ +LLP+LV SAQ+LARP IS F V AV LG+SGRIF+G N
Sbjct: 12 RFVISASEAESQ------SISKLLPSLVSSAQSLARPSISNFPVAAVRLGTSGRIFMGVN 65
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EFPGLP H +IHAEQFL+TN+ N E RL AVS APCGHC QFLQELR+ DI I I
Sbjct: 66 MEFPGLPFHHTIHAEQFLLTNMANNVETRLDSFAVSVAPCGHCPQFLQELRDAPDIQILI 125
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSF 168
TS + PLSH L FGP+DL K VPLLLE N +S
Sbjct: 126 TS--HKNPHFSPLSHFLSHHFGPHDLFPKTVPLLLEPRHNALSL 167
>gi|307111168|gb|EFN59403.1| hypothetical protein CHLNCDRAFT_33857 [Chlorella variabilis]
Length = 402
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 168/294 (57%), Gaps = 11/294 (3%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+F + E ++ + G+ +LL L+ A LARPPIS FHVGAVGLGSSG +++G N
Sbjct: 106 KFRVAPEEVAALQAQHGVGEEELLARLIGPAAELARPPISSFHVGAVGLGSSGALYVGVN 165
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EF LPL+ S+HAEQFL+ N + + E ++ LAVSAAPCGHCRQF EL D+NI +
Sbjct: 166 LEFVRLPLYNSVHAEQFLLVNALHHGEREIRRLAVSAAPCGHCRQFYSELACAPDVNILL 225
Query: 125 TSINSN--ERKYHPLSHLLPDRFGPNDLL-DKDVPLLLETHQNGMSFNLCNGQIPET--- 178
+ + + L LLP RF P DLL D PLLL+ NG+ ++
Sbjct: 226 PAPRPAVFQGGTYSLGQLLPMRFKPADLLPDPATPLLLQPQDNGVQLTAAARELLHARAG 285
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ ER AL A S++PYS+CP+G+AI+ G +Y G Y+ESAAYNPSL P+Q A+
Sbjct: 286 DAAFERAAAEALAEAVGSYSPYSRCPAGLAIVTQGGGVYSGGYVESAAYNPSLPPLQTAI 345
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
V + G Y + LVE D V+ R++L+ I+P+ V
Sbjct: 346 VDAVIDGMP-----CYTAVDEVVLVELADGQVQHAPTTRVILEQIAPQARLTVL 394
>gi|297803084|ref|XP_002869426.1| hypothetical protein ARALYDRAFT_328753 [Arabidopsis lyrata subsp.
lyrata]
gi|297315262|gb|EFH45685.1| hypothetical protein ARALYDRAFT_328753 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 13 AESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPL 72
A + + SG + + L+ A LAR + VG GSSGR FLG NV+ GLPL
Sbjct: 10 APNETEFSGDFTTETIMPLINRALPLARTLNPQLPRVVVGRGSSGRTFLGVNVDLRGLPL 69
Query: 73 HQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITS 126
H SIHAEQFL+ NL L+ E +L LA+SA APCGHC FLQE+R+ S+ I IT
Sbjct: 70 HYSIHAEQFLVVNLALHNERKLNCLAISAGGTFFYAPCGHCCHFLQEIRDASNTQILITD 129
Query: 127 INSNERKYHPLSHLLPDRFGP--NDLLDKDVPLLLETHQNGMSFNLCN--GQIPETENPK 182
+ PLS LP +F N++ + LL +NG++ N +I +
Sbjct: 130 PLFRQNSM-PLSTFLPQKFFSVYNEVPEYFARLLDHNRRNGLTLIDPNPIREICVNSDSC 188
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
LK AL AAN+S+APYS C SGVA+MD +G +Y G YMES AYN P+QAALV ++
Sbjct: 189 THLKCRALNAANRSYAPYSNCSSGVALMDHQGKVYSGWYMESVAYN----PIQAALVDFV 244
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFH 293
+ GGG +++IV A LVEK A Q AR +++ I+ C F V H
Sbjct: 245 ----TNGGGHEFDKIVQAVLVEKRVAKFSQVARARNIIKKIAHDSCVFKVLH 292
>gi|15233634|ref|NP_194694.1| cytidine deaminase 4 [Arabidopsis thaliana]
gi|4836450|gb|AAD30448.1|AF121877_8 DesH [Arabidopsis thaliana]
gi|5123559|emb|CAB45325.1| cytidine deaminase 4 (CDA4) [Arabidopsis thaliana]
gi|7269864|emb|CAB79723.1| cytidine deaminase 4 (CDA4) [Arabidopsis thaliana]
gi|67633772|gb|AAY78810.1| cytidine deaminase 4 [Arabidopsis thaliana]
gi|332660255|gb|AEE85655.1| cytidine deaminase 4 [Arabidopsis thaliana]
Length = 251
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 154/292 (52%), Gaps = 54/292 (18%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+F++ EA S G++ L L + A LAR PIS +GL SS RIFLG N
Sbjct: 6 KFILTREEAAS----KGVSRPSDLVKLEEEAMILARAPISGVQDAVLGLASSDRIFLGVN 61
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
VEF GLPLH SI AEQFL+ NL LN F QEL
Sbjct: 62 VEFEGLPLHHSISAEQFLVANLALN--------------------FEQELH--------- 92
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPK-- 182
+ L+P RF ++DVPLLL N ++ + NP+
Sbjct: 93 -------------ACLIPSRFYLESF-EEDVPLLLVPQNNRLAHSDPFSAAEICSNPEHC 138
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
LK AL AANKS+A YSKCPSGVA++ CEG +Y G +ESAAYN SLGPVQAALV ++
Sbjct: 139 SHLKCRALTAANKSNAQYSKCPSGVALI-CEGEVYGGWCIESAAYNLSLGPVQAALVDFM 197
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
A G G G+E I A LVE DA V QE AR+LL+ I+P C F+VF C
Sbjct: 198 ARGE----GKGFEMITGAVLVEMNDAKVSQEATARILLKTIAPGCNFSVFRC 245
>gi|3818579|gb|AAC69570.1| cytidine deaminase 4 [Arabidopsis thaliana]
Length = 251
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 153/292 (52%), Gaps = 54/292 (18%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
+F++ EA S G++ L L + A LAR PIS +GL SS RIFLG N
Sbjct: 6 KFILTREEAAS----KGVSRPSDLVKLEEEAMILARAPISGVQDAVLGLASSDRIFLGVN 61
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
VEF GLPLH SI AEQFL+ NL LN F QEL
Sbjct: 62 VEFEGLPLHHSISAEQFLVANLALN--------------------FEQELH--------- 92
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPK-- 182
+ L+P RF ++DVPLLL N ++ + NP+
Sbjct: 93 -------------ACLIPSRFYLESF-EEDVPLLLVPQNNRLAHSDPFSAAEICSNPEHC 138
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
LK AL AANKS+A YSKCPSGVA++ CEG +Y G +ESAAYN SLGPVQAALV ++
Sbjct: 139 SHLKCRALTAANKSYAQYSKCPSGVALI-CEGEVYGGWCIESAAYNLSLGPVQAALVDFI 197
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
G G G+E I A LVE DA V QE AR+LL+ I+P C F+VF C
Sbjct: 198 VRGE----GKGFEMITGAVLVEMNDAKVSQEATARILLKTIAPGCNFSVFRC 245
>gi|308803649|ref|XP_003079137.1| putative cytidine deaminase (ISS) [Ostreococcus tauri]
gi|116057592|emb|CAL53795.1| putative cytidine deaminase (ISS) [Ostreococcus tauri]
Length = 287
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 160/284 (56%), Gaps = 34/284 (11%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
LLP L + A+ LARPP SKFHVGA LG+SGR +LG NVE PG+PL+ S+HAEQF +
Sbjct: 17 LLP-LAERARELARPPTSKFHVGACALGASGRAYLGVNVEIPGVPLNHSVHAEQFALVIA 75
Query: 87 ILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ E R++ +A + APCGHCRQF+ ELR+ D+ + + + R PL LLP FG
Sbjct: 76 MACGERRIEAIATTEAPCGHCRQFMNELRDGQDLKV----VTKDWRL--PLRELLPHAFG 129
Query: 147 PNDLLDKDVPLLLETH-----------QNGMSFNLCNGQIPETENP-----KERLKYAAL 190
P DL+ D+PLLLE +N + F NG+ P E+ +E L +
Sbjct: 130 PMDLI-SDMPLLLEDQGVRLGCRGQEGENALKF--LNGRGPLREDELDHGWRELLGFTD- 185
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGG 250
A NKS+ PY+K P+G+A+ G + G +E AAYNPS+ P+Q + +A G
Sbjct: 186 AALNKSYTPYTKSPAGIAVRTSCGAVTTGWALECAAYNPSMSPLQVVITRMVAMGKD--- 242
Query: 251 GGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP-KCEFNVFH 293
ER+V L E D+ VR + RL + ++ + +F V H
Sbjct: 243 LTTIERVV---LREFCDSAVRYDETVRLAVHKMTDGRADFFVVH 283
>gi|384247156|gb|EIE20643.1| cytidine deaminase-like protein [Coccomyxa subellipsoidea C-169]
Length = 267
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 164/284 (57%), Gaps = 30/284 (10%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++E +A + K +T+ +L+ LV A LARPP S F VGA+GLG SGRI++G N+E
Sbjct: 1 MLEPDQAAELQAKHSVTLHELMQLLVAPAALLARPPTSAFPVGAIGLGVSGRIYVGVNLE 60
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
FP LPL S+HAEQFL+ N E L + V+AAPCGHCRQFL E ++I
Sbjct: 61 FPNLPLQHSVHAEQFLVANAAACGERGLTRITVNAAPCGHCRQFLAETVTAESMDIVY-- 118
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDK-DVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+ + L +L D+F P+DL++ PLLLE N +
Sbjct: 119 ----KGNCYRLDDILVDKFCPSDLIEPGTAPLLLEQQHNAEA------------------ 156
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA++AA +S+APY++CP+G+A++ G IY G +ES AYNP+L P+Q+A +A+ AAG
Sbjct: 157 AEAAVKAAMESYAPYTRCPAGLALVTNSGRIYGGGVIESCAYNPTLNPLQSAYIAFAAAG 216
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+ + ++ AA LVE +A V E + R+ LQ I+P E
Sbjct: 217 EA-----SFFQVCAAVLVELPEAAVSHEVSTRIALQCIAPGAEM 255
>gi|149922076|ref|ZP_01910517.1| cytidine deaminase [Plesiocystis pacifica SIR-1]
gi|149817128|gb|EDM76609.1| cytidine deaminase [Plesiocystis pacifica SIR-1]
Length = 297
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 162/292 (55%), Gaps = 28/292 (9%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E ++ ++G+ + + AQ A PP+S F VGAV LG+SGR++LG N+EF
Sbjct: 28 IEAEELRALQAEAGIDEDAAVLACLSWAQRWASPPVSNFRVGAVALGASGRVYLGANLEF 87
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PGLPL++++HAEQ IT ++ E L+ LA SAAPCGHCRQF+ EL + I
Sbjct: 88 PGLPLNRTVHAEQAAITVAWVHGETGLRALATSAAPCGHCRQFMLELPEPHP-RVLIPG- 145
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
R + LLP+ FGP D L ++ LL+ H + L G ETE+P L
Sbjct: 146 ----RAALATAELLPEAFGPAD-LGREAQLLVAAH----ALTLDAG---ETEDP---LVR 190
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGN-----IYKGSYMESAAYNPSLGPVQAALVAYL 242
AALEAA +S +PY++ P+GVA+ + I+ GS ES A+NPSL P+Q+ALVA
Sbjct: 191 AALEAAARSSSPYAEAPAGVALELAPSSPRAQRIFAGSVAESVAFNPSLAPMQSALVAL- 249
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
GGG I A LVE + A V Q A +L ++P F C
Sbjct: 250 -----HHGGGRMRAITRAVLVELDKAPVSQLDAGAQVLASVAPGVSLERFTC 296
>gi|297803074|ref|XP_002869421.1| cytidine deaminase 4 [Arabidopsis lyrata subsp. lyrata]
gi|297315257|gb|EFH45680.1| cytidine deaminase 4 [Arabidopsis lyrata subsp. lyrata]
Length = 251
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 155/296 (52%), Gaps = 54/296 (18%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
+++ +F++ EA S S L+L + A LAR PIS + L SS R+F
Sbjct: 2 VQQLKFILTLEEAASKGVSSPSDFLKL----KEDAIILARAPISGVQDAVLALASSDRVF 57
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
LG NVEF GLPLH SI +EQFL+ NL LN F QEL
Sbjct: 58 LGVNVEFEGLPLHHSISSEQFLVANLALN--------------------FEQELH----- 92
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFN--LCNGQIPET 178
+ LLP RF ++DVPLLL N ++ + + +I
Sbjct: 93 -----------------ACLLPSRFYLESF-EEDVPLLLVPQHNRLALSDPVSAAEICAN 134
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
K AL AANKS+A YSKCPSGVA++ CEG +YKG +ESAAYN SLGPVQAAL
Sbjct: 135 REHCSHPKCRALTAANKSYAQYSKCPSGVALI-CEGEVYKGWCIESAAYNLSLGPVQAAL 193
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
V ++A G G G+E I A L+E DA V QE AR+LL+ I+P C NVFHC
Sbjct: 194 VDFVARGE----GKGFEMITGAVLMEMNDANVSQEATARVLLETIAPGCVLNVFHC 245
>gi|261343416|ref|ZP_05971061.1| cytidine deaminase [Providencia rustigianii DSM 4541]
gi|282568559|gb|EFB74094.1| cytidine deaminase [Providencia rustigianii DSM 4541]
Length = 298
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 156/274 (56%), Gaps = 26/274 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
M++P F ++ A + + + +SG T +L L+ A A PIS F+VGA+ G SG
Sbjct: 24 MDKPDFSAMLTAEQVKHIKAESGFTDSELAFLLLPFAAAYAVTPISHFNVGAIACGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF + + Q+IHAEQ IT+ L E +L + V+ PCGHCRQF+ ELR
Sbjct: 84 LYFGANMEFSHVSIGQTIHAEQCSITHAWLKGEKQLTSITVNYTPCGHCRQFMNELREGG 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
I + + +R+ L LPD FGP+DL LLL+T +G +
Sbjct: 144 KIMVHLP-----QRQAATLHDYLPDSFGPSDL--NITTLLLDTVDHGYA----------- 185
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
++RL AA++AAN+SHAPYS SG+A+ +G+++ G Y E+AA+NPSL P+QAAL
Sbjct: 186 NQSRDRLLSAAIDAANQSHAPYSNSHSGIAVQLKDGSLFTGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
+ AG I A LVE++DA+V+Q
Sbjct: 246 IMVNLAGKD------ITSIDQATLVERQDAIVQQ 273
>gi|300722466|ref|YP_003711754.1| cytidine/deoxycytidine deaminase [Xenorhabdus nematophila ATCC
19061]
gi|297628971|emb|CBJ89556.1| cytidine/deoxycytidine deaminase [Xenorhabdus nematophila ATCC
19061]
Length = 294
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 159/277 (57%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ES+ Q SG L L+ A + PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVESIKQNSGFDDHTLALALLPLAAACSIAPISHFYVGAIAQGESGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
FP +PL Q++HAEQ IT+ L E +L + V+ +PCGHCRQF+ EL + + + + +
Sbjct: 92 FPNVPLQQTVHAEQSAITHAWLYGEKKLISITVNYSPCGHCRQFMNELNSGTQLEVYLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R L+ LP+ FGP DL+ D PLLL+T + + Q+ +N L
Sbjct: 151 ----DRPKLTLADYLPEAFGPGDLV--DTPLLLDTINH-------DYQLATDDN----LV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN+SHAPYS+ +G+A+ D +G IY G Y E+AA+NPSL P+QAAL+ +GG
Sbjct: 194 QAALDAANRSHAPYSQSHAGIALQDKQGKIYTGRYAENAAFNPSLPPLQAALIFMNMSGG 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ + I A LVE E++ + Q A L +
Sbjct: 254 NC------QSIKRAVLVEGENSRLSQWSATTSTLTAL 284
>gi|212712133|ref|ZP_03320261.1| hypothetical protein PROVALCAL_03215 [Providencia alcalifaciens DSM
30120]
gi|422018887|ref|ZP_16365438.1| cytidine deaminase [Providencia alcalifaciens Dmel2]
gi|212685180|gb|EEB44708.1| hypothetical protein PROVALCAL_03215 [Providencia alcalifaciens DSM
30120]
gi|414104073|gb|EKT65645.1| cytidine deaminase [Providencia alcalifaciens Dmel2]
Length = 298
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 155/274 (56%), Gaps = 26/274 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
M++P F ++ A + + + +SG T +L +L+ A A PIS+F+VGA+ G SG
Sbjct: 24 MDKPDFSAMLTAEQVKQIKAESGCTDSELAFSLLPFAAAYAVTPISRFNVGAIACGISGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF + + Q+IHAEQ IT+ L E +L + V+ PCGHCRQF+ ELR
Sbjct: 84 LYFGANMEFNHVSIGQTIHAEQCAITHAWLKGEKQLTSITVNYTPCGHCRQFMNELREGG 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
I + + +R+ L LPD FGP+DL LLL+ +G
Sbjct: 144 KIMVHLP-----KRQAATLHDYLPDSFGPSDL--NITTLLLDNVDHGYK----------- 185
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
++RL AA EAAN+SHAPYS+ SG+A+ +G+++ G Y E+AA+NPSL P+QAAL
Sbjct: 186 NQSRDRLLSAATEAANQSHAPYSESHSGIAVQLKDGSLFTGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
+ AG I A LVEK+DA V+Q
Sbjct: 246 IMVNLAGKD------IHAIEQAVLVEKQDATVQQ 273
>gi|271501025|ref|YP_003334050.1| cytidine deaminase [Dickeya dadantii Ech586]
gi|270344580|gb|ACZ77345.1| cytidine deaminase [Dickeya dadantii Ech586]
Length = 295
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 136/240 (56%), Gaps = 26/240 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S FHVGA+ G SG + G N+EF GLPL Q+IHAEQ I++ L EP L+ + V+
Sbjct: 67 PVSDFHVGAIAQGVSGAFYWGANMEFDGLPLQQTIHAEQSAISHAWLRDEPALRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + ++ IC+ R PL H LPD FGP DL LL++T
Sbjct: 127 TPCGHCRQFMNELNSAPELRICLPG-----RAAAPLGHYLPDAFGPRDLAIN--TLLMDT 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
NG++ + L AL AAN+SHAPYSK SG+A+ +G+ Y G Y
Sbjct: 180 IDNGLTLAT-----------DDTLCQLALAAANRSHAPYSKAFSGIALETRQGHRYTGRY 228
Query: 222 MESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
E+AA+NPSL P+QAAL + LA G + I A LVE A + Q A+ LL
Sbjct: 229 AENAAFNPSLPPLQAALNLVNLA-------GEAFSDIQHAVLVESSHATLSQWSLAQPLL 281
>gi|422022183|ref|ZP_16368691.1| cytidine deaminase [Providencia sneebia DSM 19967]
gi|414096676|gb|EKT58332.1| cytidine deaminase [Providencia sneebia DSM 19967]
Length = 295
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 158/286 (55%), Gaps = 28/286 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+++P F ++ A + + + G +L L+ A A PIS F VGA+ G SG
Sbjct: 24 IDKPDFPAMLTAEQTAQIKEHCGYNDSELAFFLLPVAAAYAVTPISHFKVGAIARGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G+ + Q+IHAEQ +T+ L E +L + V+ PCGHCRQF+ ELR
Sbjct: 84 LYFGANMEFSGVAISQTIHAEQCAVTHAWLKGEKQLTTVTVNYTPCGHCRQFMNELRGGG 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDV-PLLLETHQNGMSFNLCNGQIPE 177
I I + ER+ L LPD FGP DL D+ LL++ +G
Sbjct: 144 QIEIHLP-----ERQTATLHDYLPDSFGPADL---DIETLLMDEVDHGF----------- 184
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
T + ++RL AA EAAN+SHAPYS+ SG+A+ +G+++ G Y E+AA+NPSL P+QAA
Sbjct: 185 TTSSRDRLLCAATEAANQSHAPYSQSYSGIALQLKDGSLFTGRYAENAAFNPSLPPLQAA 244
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
L+ AG I A LVEK++A+V+Q + L+ +
Sbjct: 245 LIMINLAGKD------MHSIEQALLVEKQNAIVKQWNTTENTLKAL 284
>gi|317491320|ref|ZP_07949756.1| cytidine deaminase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920867|gb|EFV42190.1| cytidine deaminase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 294
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 152/277 (54%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI A++ E++ Q +G+ +L L+ A + PISKF+VGAV G SG ++ G N+E
Sbjct: 32 VITASQVETLKQATGMNDSELAFALLPLAAACSLAPISKFYVGAVARGVSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G P+ Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + + I +
Sbjct: 92 FLGAPMQQTIHAEQCAVTHAWLRGEKALASITVNYTPCGHCRQFMNELNTGTQLAIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R+ L H LPD FGP DL K LL++ + +S + L
Sbjct: 152 -----RQPATLGHYLPDAFGPRDLDIK--TLLMDEEDHNLSL-----------ASDDVLA 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN+SHAPYS+ SGVA+ +GN+Y G Y E+AA+NPSL P+QAAL+ +G
Sbjct: 194 QAALDAANRSHAPYSQAYSGVALEAADGNVYCGRYAENAAFNPSLPPLQAALILMNVSGK 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+I A LVE + + Q A + L +
Sbjct: 254 D------VLQIRRAVLVETKSTMFSQWDATQATLNAL 284
>gi|85058946|ref|YP_454648.1| cytidine deaminase [Sodalis glossinidius str. 'morsitans']
gi|123519680|sp|Q2NUD2.1|CDD_SODGM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|84779466|dbj|BAE74243.1| cytidine deaminase [Sodalis glossinidius str. 'morsitans']
Length = 309
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 150/276 (54%), Gaps = 11/276 (3%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ A + + + Q GL L TL+ A A P+S F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSAPQVKELMQAGGLDEDALCFTLLPLAAAYAVTPLSHFNVGAIACGISGNLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PL Q++HAEQ I + L E RL+ L V+ PCGHCRQF+ EL + +D+ IC+
Sbjct: 93 LAAPLQQTVHAEQSAIAHAWLRGEKRLRALTVNYTPCGHCRQFMNELNSGTDLIICLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER L+ LPD FGP DL + + L H + L + + + + L
Sbjct: 151 ---ERSAATLASYLPDAFGPRDLAIQSLLLDEIDHAFAAAAWLDHDLSAPSPDDNDPLVS 207
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AL+AA++SHAPYS+ SGVA+ +G +Y G Y E+AA+NPSL P+Q AL+ AAG
Sbjct: 208 TALDAASRSHAPYSQSHSGVALQTQDGCVYAGRYAENAAFNPSLPPLQTALILMNAAGAD 267
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+I A L E+++A + Q A L +
Sbjct: 268 D------RQIRRAVLAERQNAPITQWPATNATLAAL 297
>gi|422015056|ref|ZP_16361663.1| cytidine deaminase [Providencia burhodogranariea DSM 19968]
gi|414100287|gb|EKT61908.1| cytidine deaminase [Providencia burhodogranariea DSM 19968]
Length = 295
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 154/274 (56%), Gaps = 26/274 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+++P F ++ A + + + + +L L+ A A PIS F+VGA+ G SG
Sbjct: 24 IDKPDFPAMLSAEQVDQIKTNCNYSDSELAFLLLPFAAAYAVTPISHFNVGAIARGISGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
I+ G N+EF + + Q+IHAEQ +T+ L E +L + V+ PCGHCRQF+ ELR
Sbjct: 84 IYFGANMEFSQVAIGQTIHAEQCAVTHAWLKGEKQLLSVTVNYTPCGHCRQFMNELRGGG 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+I +I+ ER+ L LPD FGP DL LL++T +G T
Sbjct: 144 EI-----AIHLPERQPATLHDYLPDSFGPIDL--DITTLLMDTVDHGY-----------T 185
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ RL YAA+EAAN+SHAPYS SG+A+ +G+++ G Y E+AA+NPSL P+QAAL
Sbjct: 186 TPSRNRLLYAAIEAANQSHAPYSLSHSGIALQLKDGSLFTGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
+ AG I A LVEK++A+V+Q
Sbjct: 246 IMVNLAGKD------MRSIEQAVLVEKQNAIVKQ 273
>gi|293396976|ref|ZP_06641250.1| cytidine deaminase [Serratia odorifera DSM 4582]
gi|291420447|gb|EFE93702.1| cytidine deaminase [Serratia odorifera DSM 4582]
Length = 294
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 153/285 (53%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
M+ P F + + ++ E++ Q+ GL L L+ A T + PIS F+VGA+ G SG
Sbjct: 24 MDTPDFPAMFDLSQVEAIKQRCGLDDDALAFALLPLAATCSLTPISHFNVGAIARGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL +
Sbjct: 84 LYFGANMEFHGAPMQQTIHAEQCAVTHAWLRGERSLASITVNYTPCGHCRQFMNELNSGG 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
++ I + R L+ LPD FGP DL LL++ +G +L
Sbjct: 144 ELQIRLPG-----RDAATLADYLPDAFGPRDLAIST--LLMDPVDHGFQLSL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AAL AAN+SHAPYS SGVA+ EG I+ G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---NDPLDQAALNAANRSHAPYSNAHSGVALETAEGKIHAGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
V +GG +I A L E + A++ Q A R L +
Sbjct: 246 VLLNLSGGD------CRQIRRAVLAEPQSAILSQWDATRATLAAL 284
>gi|226330827|ref|ZP_03806345.1| hypothetical protein PROPEN_04748 [Proteus penneri ATCC 35198]
gi|225201622|gb|EEG83976.1| putative cytidine deaminase [Proteus penneri ATCC 35198]
Length = 230
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 136/242 (56%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGA+ G SG ++ G N+EF G PL Q++HAEQ +T+ L E RL + V+
Sbjct: 3 PISHFNVGAISRGESGNLYFGANMEFAGAPLQQTVHAEQSAVTHAWLRGESRLISITVNY 62
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I I + RK L LPD FGP DL LL++
Sbjct: 63 TPCGHCRQFMNELNSGTHIQIQLPG-----RKVATLGDYLPDSFGPKDL--NITSLLMDK 115
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G E +N E L AL+A N+SHAPYS+ SG+A+ G I++GSY
Sbjct: 116 VNHGY----------EIDNHSE-LAQQALQATNRSHAPYSESHSGIAVQMKNGKIFQGSY 164
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ AG S I +A L+EK + ++ Q A + L
Sbjct: 165 AENAAFNPSLPPLQAALILLNMAGES------VMEIESAVLIEKAETILTQWDATQATLT 218
Query: 282 VI 283
+
Sbjct: 219 AL 220
>gi|183598262|ref|ZP_02959755.1| hypothetical protein PROSTU_01647 [Providencia stuartii ATCC 25827]
gi|386744563|ref|YP_006217742.1| cytidine deaminase [Providencia stuartii MRSN 2154]
gi|188020432|gb|EDU58472.1| cytidine deaminase [Providencia stuartii ATCC 25827]
gi|384481256|gb|AFH95051.1| cytidine deaminase [Providencia stuartii MRSN 2154]
Length = 295
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 151/274 (55%), Gaps = 26/274 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F ++ A + + G + +L L+ A A PIS F+VGA+ G SG
Sbjct: 24 IDTPDFQGMLSAEQVNQLKADCGYSDSELAFLLLPFAAAYAVTPISHFNVGAIAQGISGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF + + Q+IHAEQ +T+ + E +L + V+ PCGHCRQF+ ELR
Sbjct: 84 LYFGANMEFSHVAIAQTIHAEQCAVTHAWMKGEKQLTSITVNHTPCGHCRQFMNELRGGG 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
I +I ER+ L LPD FGP DL LL+++ +G S
Sbjct: 144 KI-----AIRLPERQPATLHDYLPDSFGPADL--AITTLLMDSVDHGYS----------- 185
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ RL AA+EAAN+SHAPYS+ SG+A+ +G+++ G Y E+AA+NPSL P+QAAL
Sbjct: 186 TPSRNRLLCAAIEAANQSHAPYSQSHSGIALQLKDGSLFTGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
+ AG I A LVEK+DA+V+Q
Sbjct: 246 IMVNMAGKD------LHAIEQAVLVEKQDAIVKQ 273
>gi|197284540|ref|YP_002150412.1| cytidine deaminase [Proteus mirabilis HI4320]
gi|425067431|ref|ZP_18470547.1| cytidine deaminase [Proteus mirabilis WGLW6]
gi|425073131|ref|ZP_18476237.1| cytidine deaminase [Proteus mirabilis WGLW4]
gi|226701683|sp|B4ESY3.1|CDD_PROMH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|194682027|emb|CAR41521.1| cytidine deaminase [Proteus mirabilis HI4320]
gi|404595768|gb|EKA96302.1| cytidine deaminase [Proteus mirabilis WGLW4]
gi|404601262|gb|EKB01675.1| cytidine deaminase [Proteus mirabilis WGLW6]
Length = 294
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 136/242 (56%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGA+ G SG + G N+EF G PL Q++HAEQ +T+ L E RL + V+
Sbjct: 67 PISHFNVGAIARGESGHFYFGANMEFAGAPLQQTVHAEQSAVTHAWLRGESRLVAITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I I + RK L LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTHIAIHLPG-----RKVATLGDYLPDSFGPKDL--NITTLLMDK 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G QI T +L AL+A N+SHAPYS SG+A+ G I++GSY
Sbjct: 180 VNHGY-------QIDNT----SQLAQQALQAINRSHAPYSHSHSGIAVQMKSGKIFQGSY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPS+ P+QAAL+A AG + I +A L+EK D+++ Q A + L
Sbjct: 229 AENAAFNPSMPPLQAALIALNMAGEN------VMDIESAILIEKADSLLTQWDATQATLT 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|227356720|ref|ZP_03841106.1| cytidine deaminase [Proteus mirabilis ATCC 29906]
gi|227163228|gb|EEI48159.1| cytidine deaminase [Proteus mirabilis ATCC 29906]
Length = 299
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 136/242 (56%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGA+ G SG + G N+EF G PL Q++HAEQ +T+ L E RL + V+
Sbjct: 72 PISHFNVGAIARGESGHFYFGANMEFAGAPLQQTVHAEQSAVTHAWLRGESRLVAITVNY 131
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I I + RK L LPD FGP DL LL++
Sbjct: 132 TPCGHCRQFMNELNSGTHIAIHLPG-----RKVATLGDYLPDSFGPKDL--NITTLLMDK 184
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G QI T +L AL+A N+SHAPYS SG+A+ G I++GSY
Sbjct: 185 VNHGY-------QIDNT----SQLAQQALQAINRSHAPYSHSHSGIAVQMKSGKIFQGSY 233
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPS+ P+QAAL+A AG + I +A L+EK D+++ Q A + L
Sbjct: 234 AENAAFNPSMPPLQAALIALNMAGEN------VMDIESAILIEKADSLLTQWDATQATLT 287
Query: 282 VI 283
+
Sbjct: 288 AL 289
>gi|238795779|ref|ZP_04639293.1| Cytidine deaminase [Yersinia mollaretii ATCC 43969]
gi|238720505|gb|EEQ12307.1| Cytidine deaminase [Yersinia mollaretii ATCC 43969]
Length = 294
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 135/242 (55%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ G SG ++ G N+EF G PL Q+IHAEQ +T+ L E L + V+
Sbjct: 67 PISHFMVGAIARGKSGNLYFGANMEFSGTPLQQTIHAEQCAVTHSWLRGEASLVSITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + +D++I + R L H LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTDLHIHLPG-----RPASTLGHYLPDAFGPKDL--AITTLLMDP 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G S I ET + L AAL+AAN SHAPYS SGVA+ +G IY G Y
Sbjct: 180 VNHGYS-------IAET----DPLTQAALDAANLSHAPYSLSHSGVAVELADGTIYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ +G + G I A LVE +A++ Q A L
Sbjct: 229 AENAAFNPSLPPLQAALILTNLSGKACGA------IRRAVLVEGNNAILSQWDATHATLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|251790143|ref|YP_003004864.1| cytidine deaminase [Dickeya zeae Ech1591]
gi|247538764|gb|ACT07385.1| cytidine deaminase [Dickeya zeae Ech1591]
Length = 295
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 136/241 (56%), Gaps = 28/241 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S FHVGA+ G SG + G N+EF GLPL Q++HAEQ I++ L E L+ + V+
Sbjct: 67 PVSGFHVGAIAQGVSGAFYWGANMEFDGLPLQQTVHAEQSAISHAWLRHESALRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLE 160
PCGHCRQF+ EL + ++ IC+ R PL H LPD FGP DL +D LL++
Sbjct: 127 TPCGHCRQFMNELNSAPELRICLPG-----RAPAPLGHYLPDAFGPRDLAIDT---LLMD 178
Query: 161 THQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGS 220
NG++ T++ RL AL AAN SHAPYSK SG+A+ +G Y G
Sbjct: 179 NIDNGLTLT--------TDDTLCRL---ALAAANHSHAPYSKAFSGIALETRQGRRYTGR 227
Query: 221 YMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
Y E+AA+NPSL P+QAAL + LA G + I A LVE + Q A+ L
Sbjct: 228 YAENAAFNPSLPPLQAALNLVNLA-------GDAFSDIQRAVLVESGHVALSQWSLAQPL 280
Query: 280 L 280
L
Sbjct: 281 L 281
>gi|422007972|ref|ZP_16354957.1| cytidine deaminase [Providencia rettgeri Dmel1]
gi|414096107|gb|EKT57766.1| cytidine deaminase [Providencia rettgeri Dmel1]
Length = 295
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 152/279 (54%), Gaps = 24/279 (8%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
R ++ A + + + ++G++ +L L+ A A PIS FHVGA+ G+SG ++ G N
Sbjct: 30 RGMLTAEQVKQIKAEAGVSDAELAFALLPFAAAYAITPISHFHVGAIACGASGNLYFGAN 89
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICI 124
+EF + + Q IHAEQ +T+ + E ++ + V+ PCGHCRQF+ ELR I
Sbjct: 90 MEFSHVSMGQVIHAEQCAVTHSWMKGETQITSITVNYTPCGHCRQFMNELREGGKI---- 145
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKER 184
+N R L H LPD FGP+DL LLL+ +G ++R
Sbjct: 146 -MVNLPGRTPAVLHHYLPDSFGPSDL--NITTLLLDPVDHGYK-----------NQSRDR 191
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L AA+EAAN+SHAPYS+ SG+A+ +G+++ G Y E+AA+NPSL P+QAAL+ A
Sbjct: 192 LLSAAIEAANQSHAPYSRSHSGIALQLKDGSLFTGRYAENAAFNPSLPPLQAALIMINLA 251
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G I A VEK+DA+++ LQ +
Sbjct: 252 GKD------IHAIDQAKFVEKQDAIIKHWCVTENTLQAL 284
>gi|222619155|gb|EEE55287.1| hypothetical protein OsJ_03230 [Oryza sativa Japonica Group]
Length = 283
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/275 (44%), Positives = 158/275 (57%), Gaps = 40/275 (14%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TV LLP LV SA AR PIS+F VGAVGLG+SGR++ G N+EF GLPL S
Sbjct: 39 TVEDLLPLLVPSAMRRARAPISRFPVGAVGLGASGRVYAGVNLEFRGLPLSHS------- 91
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN--ERKYHPLSHL 140
G R FLQE+R I I +TS + ++ ++ L
Sbjct: 92 ----------------------GPRRAFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASL 129
Query: 141 LPDRFGPNDLLDKDVPLLLETHQN--GMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP FGP+DLL K VPL+LE H N G + NG + + RL+ AA AA +HA
Sbjct: 130 LPRPFGPHDLLPKHVPLVLEPHDNPLGEPAAVANGF--AHGDLEARLREAAEAAARAAHA 187
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PYS+CPSG A+ D EG +Y G +ESAAYNP+LGPVQAA++ +AAGG +V
Sbjct: 188 PYSECPSGFAVADGEGKVYAGGCLESAAYNPTLGPVQAAIIGMVAAGGG-----AAGDVV 242
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293
AAALVEKE +V QE AR+ L ++P+ F+V++
Sbjct: 243 AAALVEKEAGLVSQEATARIFLAAVAPQATFHVYN 277
>gi|411100486|gb|AFW03673.1| cytidine deaminase [Enterobacteriaceae bacterium HS]
Length = 309
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 145/265 (54%), Gaps = 11/265 (4%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ A + + + Q L L +L+ A A P+S F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSAGQVKDLLQVCDLDEDALCFSLLPLAAACAVTPLSHFNVGAIARGISGNLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PL Q++HAEQ I + L E RL+ + V+ PCGHCRQF+ EL + +D+ +C+
Sbjct: 93 HAAPLQQTVHAEQSAIAHAWLRGEKRLRAVTVNYTPCGHCRQFMNELNSGTDLILCLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER L+ LPD FGP DL + + L H L +G + L
Sbjct: 151 ---ERPAATLASYLPDAFGPRDLAIQSLLLDEIDHHFAAVTWLDHGLQAASPADNAPLVN 207
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AAL AA++SHAPYS+ SGVA+ +G IY G Y E+AA+NPSL P+Q+AL+ A+G
Sbjct: 208 AALSAASQSHAPYSQSHSGVALQTRDGRIYAGRYAENAAFNPSLPPLQSALILMNASGDD 267
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQ 272
+I A L E+++A + Q
Sbjct: 268 S------RQITRAVLAERQNAPITQ 286
>gi|262040161|ref|ZP_06013414.1| cytidine deaminase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259042514|gb|EEW43532.1| cytidine deaminase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 294
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + E++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVETLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDEQDHGYPVR--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|238793457|ref|ZP_04637082.1| Cytidine deaminase [Yersinia intermedia ATCC 29909]
gi|238727230|gb|EEQ18759.1| Cytidine deaminase [Yersinia intermedia ATCC 29909]
Length = 297
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 147/277 (53%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + E++ SGL L L+ A A PIS F VGA+ GSSG ++ G N+E
Sbjct: 32 MLTAKQVETVKSISGLDDNALAFALLPLAAACALAPISHFMVGAIAQGSSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + +D++I +
Sbjct: 92 FSGVPLQQTIHAEQCAVTHAWLRGEASLVAITVNYTPCGHCRQFMNELNSGTDLHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L H LPD FGP DL D+ LL M + ET + L
Sbjct: 152 -----RPAATLGHYLPDSFGPKDL---DITTLL------MDPVFHGYTVAET----DALT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AALE AN+SHAPYS SG+A+ +G IY G Y E+AA+NPSL P+QAAL+
Sbjct: 194 QAALEGANRSHAPYSNAHSGIALEAADGTIYVGRYAENAAFNPSLPPLQAALIL------ 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ GG I A L+E + + Q A L +
Sbjct: 248 TNITGGDCAAIRRAVLIEGSNPALTQWDATLATLAAL 284
>gi|358410656|gb|AEU10045.1| cytidine deaminase [Photobacterium damselae subsp. piscicida]
Length = 295
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 26/289 (8%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+E P+F I + + + ++ ++ L L+ A + PIS F+VGA+ G SGR
Sbjct: 24 IEDPQFDATISPDQFDYLLSQTQMSDSDLRVALLPIAAAYSVAPISNFYVGAIVRGLSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+E G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL
Sbjct: 84 LYFGANMEITGASLSQTVHAEQSAISHAWVKGETGISDITINYSPCGHCRQFMNELTTAK 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
++ + + +R L LP+ FGP DL D LL E + NG + E
Sbjct: 144 ELEVQLP-----QRAAKTLQEYLPESFGPADLQITDA-LLAEVN---------NGLVIEE 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L A +AAN++HAPY+K SGVA+ +G I+ G Y E+AA+NPSL P+Q AL
Sbjct: 189 ---SAELAQQACKAANRAHAPYTKNFSGVALKANDGRIFTGMYAENAAFNPSLPPLQVAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ G G +++IV AALVEK+D+ + + + LL+ I+P
Sbjct: 246 I------GMNMAGYTFDKIVEAALVEKQDSTITHVNDTQALLEAINPDI 288
>gi|269102604|ref|ZP_06155301.1| cytidine deaminase [Photobacterium damselae subsp. damselae CIP
102761]
gi|268162502|gb|EEZ40998.1| cytidine deaminase [Photobacterium damselae subsp. damselae CIP
102761]
Length = 295
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 26/289 (8%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+E P+F I + + + ++ ++ L L+ A + PIS F+VGA+ G SGR
Sbjct: 24 IEDPQFDATISPDQFDYLLSQTQMSDSDLRVALLPIAAAYSVAPISNFYVGAIVRGLSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+E G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL
Sbjct: 84 LYFGANMEITGASLSQTVHAEQSAISHAWVKGETGISDITINYSPCGHCRQFMNELTTAK 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
++ + + +R L LP+ FGP DL D LL E + NG + E
Sbjct: 144 ELEVQLP-----QRAAKTLQEYLPESFGPADLQITDA-LLAEVN---------NGLVIEE 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L A +AAN++HAPY+K SGVA+ +G I+ G Y E+AA+NPSL P+Q AL
Sbjct: 189 ---SAELAQQACKAANRAHAPYTKNFSGVALKADDGRIFTGMYAENAAFNPSLPPLQVAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ G G +++IV AALVEK+D+ + + + LL+ I+P
Sbjct: 246 I------GMNMAGYTFDKIVEAALVEKQDSTITHVNDTQALLEAINPDI 288
>gi|90578667|ref|ZP_01234477.1| cytidine deaminase [Photobacterium angustum S14]
gi|90439500|gb|EAS64681.1| cytidine deaminase [Photobacterium angustum S14]
Length = 295
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 153/284 (53%), Gaps = 24/284 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + E + ++ L+ L L+ A A PIS F+VGA+ G+SGR++ G N+E
Sbjct: 32 TISPEQFEQLVSQTNLSDTDLRLALLPVAAAYAVVPISNFYVGAIVRGTSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + +IHAEQ I++ + E ++ + ++ +PCGHCRQF+ EL D+ I +
Sbjct: 92 FVGASMACTIHAEQSAISHAWIKGETGIKDVTINYSPCGHCRQFMNELNTAQDLVIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER+ L LP+ FGP DL KD LL NG++ I E + L
Sbjct: 151 ----ERQPMTLQQYLPESFGPADLGIKDA--LLSDINNGIT-------IAE----QSELA 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA +AAN+SHAPYSK SGVA+ +G ++ G Y E+AA+NPSL P+Q AL+
Sbjct: 194 VAACDAANRSHAPYSKNFSGVALKAKDGRVFVGMYAENAAFNPSLPPLQVALI------N 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
G +V AALVE ++++ Q + LL+ ++P +
Sbjct: 248 MNMSGYKLSELVEAALVESAESLISQLARTQALLEALNPDIQMT 291
>gi|424932564|ref|ZP_18350936.1| Cytidine deaminase (Cytidine aminohydrolase) [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|407806751|gb|EKF78002.1| Cytidine deaminase (Cytidine aminohydrolase) [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
Length = 294
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDEQDHGYPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALSQWDATVATLKAL 283
>gi|50121754|ref|YP_050921.1| cytidine deaminase [Pectobacterium atrosepticum SCRI1043]
gi|81644621|sp|Q6D3B4.1|CDD_ERWCT RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|49612280|emb|CAG75730.1| cytidine deaminase [Pectobacterium atrosepticum SCRI1043]
Length = 296
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 155/283 (54%), Gaps = 28/283 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+++P F ++ A E ++ + S L V L L+ A A+ IS F VGA+ G SG
Sbjct: 24 IDKPDFAAMLTADEVNAVCEASQLDVDALAFALLPLAAACAQASISNFQVGAIAQGLSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF + L Q++HAEQ +++ L E L+ + V+ PCGHCRQF+ ELRN +
Sbjct: 84 FYFGANMEFTAVQLQQTVHAEQSAVSHAWLRNERGLRAVTVNYTPCGHCRQFMNELRNAA 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPE 177
+ I + R+ LSH LPD FGP DL +D LL++ +G + N
Sbjct: 144 SLRIQLPG-----RQPAVLSHYLPDAFGPVDLQIDT---LLMDDINHGATLQNVNA---- 191
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
L AL+AAN+SHAPYSK SG+A+ GNIY G Y E+AA+NPSL P+QAA
Sbjct: 192 -------LTRQALDAANRSHAPYSKAISGIALETASGNIYTGRYAENAAFNPSLPPLQAA 244
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
L AG I AA+VE+ +AVV ++++L
Sbjct: 245 LNLMNLAGEDPS------TIKYAAVVERRNAVVSHWAISQIML 281
>gi|322832146|ref|YP_004212173.1| cytidine deaminase [Rahnella sp. Y9602]
gi|321167347|gb|ADW73046.1| cytidine deaminase [Rahnella sp. Y9602]
Length = 296
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 150/280 (53%), Gaps = 24/280 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ AA+ + Q +GL L L+ A + PIS F+VGAV G SG ++ G N+E
Sbjct: 34 MLTAADVAQIKQATGLDDDALAFALLPLAAACSVTPISHFNVGAVARGISGNLYFGANME 93
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G P+ Q++HAEQ +T+ L E RL + V+ PCGHCRQF+ EL + + ++I +
Sbjct: 94 FAGAPMQQTVHAEQSAVTHAWLRGETRLASITVNYTPCGHCRQFMNELTSGTALDIHLP- 152
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R L LP FGP DL D+ LL N +G E+ + L
Sbjct: 153 ----DRDVATLGDYLPHSFGPKDL---DITTLLMDQVN-------HGYTLES---TDSLA 195
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+A N+SHAPYSK SGVA+ G + G Y E+AA+NPSL P+QAAL+
Sbjct: 196 LMALDACNQSHAPYSKSHSGVALETHNGKQFGGRYAENAAFNPSLPPLQAALILL----- 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
G ++ A LVE++DA++ Q A R L+ + K
Sbjct: 251 -NMSGEDCLKVRRAVLVEQKDALITQNDATRATLKALGCK 289
>gi|384257250|ref|YP_005401184.1| cytidine deaminase [Rahnella aquatilis HX2]
gi|380753226|gb|AFE57617.1| cytidine deaminase [Rahnella aquatilis HX2]
Length = 294
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 150/280 (53%), Gaps = 24/280 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ AA+ + Q +GL L L+ A + PIS F+VGAV G SG ++ G N+E
Sbjct: 32 MLTAADVAQIKQATGLDDDALAFALLPLAAACSVTPISHFNVGAVARGISGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G P+ Q++HAEQ +T+ L E RL + V+ PCGHCRQF+ EL + + ++I +
Sbjct: 92 FAGAPMQQTVHAEQSAVTHAWLRGETRLASITVNYTPCGHCRQFMNELTSGTALDIHLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R L LP FGP DL D+ LL N +G E+ + L
Sbjct: 151 ----DRDVATLGDYLPHSFGPKDL---DITTLLMDQVN-------HGYTLES---TDSLA 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+A N+SHAPYSK SGVA+ G + G Y E+AA+NPSL P+QAAL+
Sbjct: 194 LMALDACNQSHAPYSKSHSGVALETHNGKQFGGRYAENAAFNPSLPPLQAALILL----- 248
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
G ++ A LVE++DA++ Q A R L+ + K
Sbjct: 249 -NMSGEDCLKVRRAVLVEQKDALITQNDATRATLKALGCK 287
>gi|152971123|ref|YP_001336232.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238895710|ref|YP_002920445.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|329999119|ref|ZP_08303323.1| cytidine deaminase [Klebsiella sp. MS 92-3]
gi|378979806|ref|YP_005227947.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402779786|ref|YP_006635332.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419972811|ref|ZP_14488238.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419977509|ref|ZP_14492808.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419983374|ref|ZP_14498525.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419989377|ref|ZP_14504353.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419998186|ref|ZP_14512976.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420001672|ref|ZP_14516327.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420006424|ref|ZP_14520921.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420012244|ref|ZP_14526558.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420018138|ref|ZP_14532336.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420023774|ref|ZP_14537789.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420031815|ref|ZP_14545634.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420036988|ref|ZP_14550645.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420040937|ref|ZP_14554435.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420046698|ref|ZP_14560017.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420052408|ref|ZP_14565589.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420059656|ref|ZP_14572662.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420063868|ref|ZP_14576679.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420069913|ref|ZP_14582567.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420075457|ref|ZP_14587933.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420081217|ref|ZP_14593527.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421910281|ref|ZP_16340069.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421916826|ref|ZP_16346390.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|428152208|ref|ZP_18999898.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428939354|ref|ZP_19012465.1| cytidine deaminase [Klebsiella pneumoniae VA360]
gi|166989833|sp|A6TBN1.1|CDD_KLEP7 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|150955972|gb|ABR78002.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238548027|dbj|BAH64378.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328538449|gb|EGF64567.1| cytidine deaminase [Klebsiella sp. MS 92-3]
gi|364519217|gb|AEW62345.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397350208|gb|EJJ43298.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397353850|gb|EJJ46917.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397355545|gb|EJJ48544.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397361025|gb|EJJ53694.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397369500|gb|EJJ62100.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397371996|gb|EJJ64504.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397382133|gb|EJJ74296.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397386087|gb|EJJ78173.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397390853|gb|EJJ82751.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397399318|gb|EJJ90972.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397400010|gb|EJJ91656.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397406004|gb|EJJ97442.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397418471|gb|EJK09629.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397419255|gb|EJK10404.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397425310|gb|EJK16189.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397434427|gb|EJK25062.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397435313|gb|EJK25934.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397442507|gb|EJK32858.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397448550|gb|EJK38724.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397453522|gb|EJK43582.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402540717|gb|AFQ64866.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|410115780|emb|CCM82694.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410120543|emb|CCM89015.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426304169|gb|EKV66320.1| cytidine deaminase [Klebsiella pneumoniae VA360]
gi|427537854|emb|CCM96036.1| Cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
Length = 294
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDEQDHGFPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|449050470|ref|ZP_21731680.1| cytidine deaminase [Klebsiella pneumoniae hvKP1]
gi|448876561|gb|EMB11548.1| cytidine deaminase [Klebsiella pneumoniae hvKP1]
Length = 294
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIACGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIKT--LLMDEQDHGFPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|188533438|ref|YP_001907235.1| cytidine deaminase [Erwinia tasmaniensis Et1/99]
gi|226701680|sp|B2VIF3.1|CDD_ERWT9 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|188028480|emb|CAO96342.1| Cytidine deaminase [Erwinia tasmaniensis Et1/99]
Length = 296
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 21/232 (9%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I A +A+ + Q+ GL +L TL+ A A P+S F+VGAV G SG ++ G N+EF
Sbjct: 33 ISAQQADGVKQQCGLDDSELAFTLLPLAAACAVAPLSDFNVGAVARGKSGTLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G + Q++HAEQ +T+ L E L + V+ PCGHCRQF+ EL + +D+ I +
Sbjct: 93 VGATMQQTVHAEQSAVTHAWLRGESGLAGITVNYTPCGHCRQFMNELNSGTDLTIELPG- 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPK-ERLK 186
R L H LPD FGP DL LL++ +G++ P+ ++L+
Sbjct: 152 ----RAAATLGHYLPDSFGPRDL--AITTLLMDEVDHGIA-------------PRGDKLE 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AAL AAN+SHAPYS SGVA+ G IY G Y E+AA+NPSL P+Q AL
Sbjct: 193 QAALAAANQSHAPYSGACSGVALQTRSGAIYAGRYAENAAFNPSLPPLQGAL 244
>gi|365137399|ref|ZP_09344117.1| cytidine deaminase [Klebsiella sp. 4_1_44FAA]
gi|386035736|ref|YP_005955649.1| cytidine deaminase [Klebsiella pneumoniae KCTC 2242]
gi|424831528|ref|ZP_18256256.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|339762864|gb|AEJ99084.1| cytidine deaminase [Klebsiella pneumoniae KCTC 2242]
gi|363656108|gb|EHL94880.1| cytidine deaminase [Klebsiella sp. 4_1_44FAA]
gi|414708962|emb|CCN30666.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 294
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDEQDHGYPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|269138518|ref|YP_003295218.1| cytidine deaminase [Edwardsiella tarda EIB202]
gi|387867226|ref|YP_005698695.1| Cytidine deaminase [Edwardsiella tarda FL6-60]
gi|267984178|gb|ACY84007.1| cytidine deaminase [Edwardsiella tarda EIB202]
gi|304558539|gb|ADM41203.1| Cytidine deaminase [Edwardsiella tarda FL6-60]
Length = 295
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 151/277 (54%), Gaps = 23/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI AA+ +++ L L L+ A A PIS F VGA+ G+SG ++ G N+E
Sbjct: 32 VITAAQVDAIGHACHLDRQALSFALLPLAAACALTPISHFQVGAIVHGASGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G PL Q+IHAEQ IT+ L E L + V+ PCGHCRQF+ EL + + + I +
Sbjct: 92 FSGAPLQQTIHAEQCAITHAWLRGETALASITVNCTPCGHCRQFMNELNSGTALPIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R+ L LPD FGP DL K LLL+ +G++ + G + L
Sbjct: 152 -----RRAATLGDYLPDAFGPRDLQIKT--LLLDATHHGLALDNAAG---------DPLL 195
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN SHAPYS+ SGVA+ + + +Y G Y E+AA+NPSL P+QAAL+ +G
Sbjct: 196 QAALDAANASHAPYSQAYSGVAV-ETDRAVYAGRYAENAAFNPSLPPLQAALILLNMSGD 254
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
S + I AALVE A + Q A R LQ +
Sbjct: 255 S------VDAIRRAALVESRQAPLSQYAATRATLQAL 285
>gi|268590252|ref|ZP_06124473.1| cytidine deaminase [Providencia rettgeri DSM 1131]
gi|291314536|gb|EFE54989.1| cytidine deaminase [Providencia rettgeri DSM 1131]
Length = 295
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 24/245 (9%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A PIS F+VGA+ G+SG ++ G N+EF + + Q IHAEQ +T+ + E ++ +
Sbjct: 64 ALTPISHFNVGAIARGASGNLYFGANMEFSHVSMGQVIHAEQCAVTHSWMKGETQITSIT 123
Query: 99 VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLL 158
V+ PCGHCRQF+ ELR I +N R L H LPD FGP+DL LL
Sbjct: 124 VNYTPCGHCRQFMNELREGGKI-----MVNLPGRTPAVLHHYLPDSFGPSDL--NITTLL 176
Query: 159 LETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYK 218
L+ +G ++RL AA+EAAN+SHAPYS+ SG+A+ +G+++
Sbjct: 177 LDPVDHGYK-----------NQSRDRLLSAAIEAANQSHAPYSQSHSGIALQLKDGSLFT 225
Query: 219 GSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARL 278
G Y E+AA+NPSL P+QAAL+ AG I A VEK+DA+++ +
Sbjct: 226 GRYAENAAFNPSLPPLQAALIMINLAGKD------IHAIDQAKFVEKQDAIIKHWYVTEN 279
Query: 279 LLQVI 283
LQ +
Sbjct: 280 TLQAL 284
>gi|253990370|ref|YP_003041726.1| cytidine deaminase [Photorhabdus asymbiotica]
gi|253781820|emb|CAQ84983.1| cytidine deaminase [Photorhabdus asymbiotica]
Length = 294
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 155/287 (54%), Gaps = 25/287 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A +A+S+ + G L +L+ A + PIS F+VGA+ G SG ++ G N+E
Sbjct: 32 MLTAEQAKSVKKACGFDDNTLAISLLPLAAACSLTPISHFNVGAIAHGESGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F +PL Q+IHAEQ IT+ L E +L + V+ +PCGHCRQF+ EL + + + I +
Sbjct: 92 FADVPLQQTIHAEQCAITHAWLRGEKKLTSITVNYSPCGHCRQFMNELNSGTQLEIHMP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
++ L + LPD FGPN L LL++ +G + ++L
Sbjct: 151 ----QQTPLTLGYYLPDSFGPNTL--GMTTLLMDPVHHGYQL-----------DSTDKLV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+AAN+SHAPYS SG A++ +G IY G Y E+AA+NPSL P+QAAL+ +GG
Sbjct: 194 LTALDAANQSHAPYSHSYSGTALLGKDGKIYPGRYAENAAFNPSLPPLQAALILMNISGG 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVF 292
I A LVE + + V Q ++ + L + K E+ F
Sbjct: 254 DC------LTIERAVLVEGKHSKVSQRNSTQSTLATLGCSKFEYYTF 294
>gi|386825898|ref|ZP_10113014.1| cytidine deaminase [Serratia plymuthica PRI-2C]
gi|386377260|gb|EIJ18081.1| cytidine deaminase [Serratia plymuthica PRI-2C]
Length = 294
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 152/285 (53%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F + EA + +++ Q+ GL L L+ A + PIS FHVGA+ G SG
Sbjct: 24 FDAPAFPAMFEAQQVDAIKQRCGLDDDALAFALLPLAAACSLTPISHFHVGAIARGQSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L EP L + V+ PCGHCRQF+ EL + +
Sbjct: 84 LYFGANMEFSGAPMQQTIHAEQCAVTHAWLRGEPGLASITVNYTPCGHCRQFMNELNSGA 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ L LPD FGP DL LL++ G L
Sbjct: 144 GLQIRLPG-----REPATLGDYLPDSFGPKDL--DIATLLMDRVDQGYQLTL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AAL AAN+SHAPYS SGVA+ +G IY G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---SDELEKAALAAANQSHAPYSNAHSGVALEAEDGTIYAGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ +G ++I A L E + A++ Q A R L+ +
Sbjct: 246 ILLNVSGHD------CQKIRRAVLAEPQTAILTQWDATRATLEAL 284
>gi|378766510|ref|YP_005194972.1| cobalamin synthesis protein P47K [Pantoea ananatis LMG 5342]
gi|365185985|emb|CCF08935.1| cobalamin synthesis protein P47K [Pantoea ananatis LMG 5342]
Length = 296
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 140/257 (54%), Gaps = 28/257 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + G N+EF G + Q++HAEQ +T+ L E RL+ + V+
Sbjct: 68 LSHFNVGAIARGVSGNWYFGANMEFAGATMQQTVHAEQSAVTHAWLRGESRLETITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + +DI I + +R H L+H LPD FGP DL L++
Sbjct: 128 PCGHCRQFMNELNSGTDIRISLP-----QRAVHTLAHYLPDAFGPGDL--NITERLMDDV 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
G + G + L AA++AAN+SHAPYS+ SGVA+ G I+ G Y
Sbjct: 181 DQGY---VATG---------DALSQAAVKAANRSHAPYSRAFSGVALQTASGRIFSGRYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NPSL P+QAAL+ AG S + I AAAL + + Q A + L
Sbjct: 229 ENAAFNPSLPPLQAALILLNMAGES------CQDIQAAALAQTPQPALDQFSATQATLHA 282
Query: 283 ISPKCEFNVFHCGCKKS 299
+ C+ N+ H K+
Sbjct: 283 LG--CD-NLTHLTLAKA 296
>gi|421782531|ref|ZP_16218986.1| cytidine deaminase [Serratia plymuthica A30]
gi|407755325|gb|EKF65453.1| cytidine deaminase [Serratia plymuthica A30]
Length = 294
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 151/285 (52%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F + A + +++ Q+ GL L L+ A + PIS FHVGA+ G SG
Sbjct: 24 FDAPDFPAMFRAEQVDAIKQRCGLDDDALAFALLPLAAACSLTPISHFHVGAIARGQSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L EP L + V+ PCGHCRQF+ EL + S
Sbjct: 84 LYFGANMEFSGAPMQQTIHAEQCAVTHAWLRGEPGLVSITVNYTPCGHCRQFMNELNSGS 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ L LPD FGP DL LL++ G L
Sbjct: 144 GLQIRLPG-----REPATLGDYLPDSFGPKDL--DIATLLMDRVDQGYQLTL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AAL AAN+SHAPYS SGVA+ +G IY G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---SDELEKAALAAANQSHAPYSNAHSGVALEAEDGTIYAGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ +G ++I A L E + A++ Q A R L+ +
Sbjct: 246 ILLNVSGSD------CQKIRRAVLAEPQTAILTQWDATRATLEAL 284
>gi|145346868|ref|XP_001417904.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578132|gb|ABO96197.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 243
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 139/257 (54%), Gaps = 23/257 (8%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
ARPP S+FHVGA G+SG ++LG NVE +PL+ SIHAEQF + + N E +++ +A
Sbjct: 1 ARPPTSRFHVGAAARGASGNVYLGVNVEISAVPLNHSIHAEQFALVTAMANEERKVEAIA 60
Query: 99 VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYH-PLSHLLPDRFGPNDLLDKD--- 154
+ APCGHCRQF+ ELR+ + C+T RK+ PL+ LLP FGP DLLD
Sbjct: 61 TTEAPCGHCRQFMNELRDAGGLR-CVT------RKWRSPLAELLPHAFGPMDLLDDGEDE 113
Query: 155 --VPLLLE---THQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAI 209
LLLE +GM+ ++ L ALEA K++APYS +G+AI
Sbjct: 114 SARTLLLEKSWVDDSGMNAQFATLAYRHGDD-WNALVPLALEAMRKAYAPYSSSRAGIAI 172
Query: 210 MDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAV 269
G ++ G +E AAYNPS+ P+Q +A G I L+E A
Sbjct: 173 KTSCGGVFVGWSLECAAYNPSMSPLQVVFARMVAQGKD------LSSIEQCLLLECPGAH 226
Query: 270 VRQEHAARLLLQVISPK 286
V+ + RL L+ I+PK
Sbjct: 227 VKYDCTVRLTLEKIAPK 243
>gi|270261053|ref|ZP_06189326.1| hypothetical protein SOD_a02780 [Serratia odorifera 4Rx13]
gi|270044537|gb|EFA17628.1| hypothetical protein SOD_a02780 [Serratia odorifera 4Rx13]
Length = 294
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 151/285 (52%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F + A + +++ Q+ GL L L+ A + PIS FHVGA+ G SG
Sbjct: 24 FDAPDFPAMFRAEQVDAIKQRCGLDDDALAFALLPLAAACSLTPISHFHVGAIARGQSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L EP L + V+ PCGHCRQF+ EL + S
Sbjct: 84 LYFGANMEFSGAPMQQTIHAEQCAVTHAWLRGEPGLVSITVNYTPCGHCRQFMNELNSGS 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ L LPD FGP DL LL++ G L
Sbjct: 144 GLQIRLPG-----REPATLGDYLPDSFGPKDL--DIATLLMDRVDQGYQLTL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AAL AAN+SHAPYS SGVA+ +G IY G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---SDELEKAALAAANQSHAPYSNAHSGVALEAEDGTIYAGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ +G ++I A L E + A++ Q A R L+ +
Sbjct: 246 ILLNVSGSD------CQKIRRAVLAEPQTAILTQWDATRATLEAL 284
>gi|37525494|ref|NP_928838.1| cytidine deaminase [Photorhabdus luminescens subsp. laumondii TTO1]
gi|81572594|sp|Q7N6K3.1|CDD_PHOLL RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|36784922|emb|CAE13840.1| Cytidine deaminase (Cytidine aminohydrolase) (CDA) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 294
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 158/287 (55%), Gaps = 25/287 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A +A+S+ + G L L+ A + PIS F+VGA+ G SG ++ G N+E
Sbjct: 32 MLTAEQAKSIKKACGFDDNTLAVALLPLAAASSLTPISHFNVGAIARGESGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ IT+ L E RL + V+ +PCGHCRQF+ EL + + + I +
Sbjct: 92 FAGVPLQQTIHAEQCAITHAWLLGEKRLASVTVNYSPCGHCRQFMNELNSGTQLEIHLPK 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
S+ L H LPD FGPNDL LL++ +G ET ++L
Sbjct: 152 QASST-----LDHYLPDSFGPNDL--GITTLLMDPVNHGYKL--------ET---TDKLV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+AAN+S+APYS SG A++ +G IY G Y E+AA+NPSL P+QAAL+
Sbjct: 194 LTALDAANQSYAPYSNSYSGTALLGKDGIIYPGRYAENAAFNPSLPPLQAALI---LMNI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVF 292
SGG ER A LVE + + + Q A + +L + K ++ F
Sbjct: 251 SGGDCLAIER---AVLVEGKHSDLSQRSATQSILAALGCSKFDYYTF 294
>gi|411100449|gb|AFW03637.1| cytidine deaminase [primary endosymbiont of Sitophilus oryzae]
Length = 309
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 11/265 (4%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ A + + + Q L L +L+ A A P+S F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSAGQVKELLQVCDLDEDALCFSLLPLAAACAVTPLSHFNVGAIARGISGNLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PL Q++HAEQ I + L E RL+ + V+ PCGHCRQF+ EL + +D+ +C+
Sbjct: 93 HAAPLQQTVHAEQSAIAHAWLRGEKRLRAVTVNYTPCGHCRQFMNELNSGTDLILCLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER L+ LPD FGP DL + L H L +G L
Sbjct: 151 ---ERPAATLASYLPDAFGPRDLAIQSQLLDEIDHHFATVTWLDHGLQAAAPADNAPLVN 207
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AAL AA++SHAPYS+ SGVA+ +G IY G Y E+AA+NPSL P+Q+AL+ A+G
Sbjct: 208 AALGAASQSHAPYSQSHSGVALQTRDGRIYAGRYAENAAFNPSLPPLQSALILMNASGDD 267
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQ 272
+I A L E+++A + Q
Sbjct: 268 S------RQITRAVLAERQNAPITQ 286
>gi|290473998|ref|YP_003466872.1| cytidine/deoxycytidine deaminase [Xenorhabdus bovienii SS-2004]
gi|289173305|emb|CBJ80080.1| cytidine/deoxycytidine deaminase [Xenorhabdus bovienii SS-2004]
Length = 294
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 162/298 (54%), Gaps = 36/298 (12%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ES+ Q G L L+ A A PIS F+VGA+ G SG ++ G N+E
Sbjct: 32 MLTAEQVESIRQICGFDDHALALALLPLAAACAITPISHFYVGAIARGESGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q++HAEQ IT+ L E +L + V+ +PCGHCRQF+ EL + + + +C+ +
Sbjct: 92 FAGVPLQQTVHAEQSAITHAWLRGEKKLVSITVNYSPCGHCRQFMNELNSGTQLEVCLPN 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L+ LP+ FGP+DLLD + L H G + C + L
Sbjct: 152 -----RPRLTLADYLPEAFGPHDLLDAPLLLDTVNH--GYQLDTC-----------DELV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN+SHAPYS+ +G+A++D + +Y G Y E+AA+NPSL P+QAAL+ +GG
Sbjct: 194 LAALDAANQSHAPYSQSHAGIALLDEQDQVYTGRYAENAAFNPSLPPLQAALILMNMSGG 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCGCKK-SCSRF 303
+ + I A LVE +++ + Q A L + GC K C RF
Sbjct: 254 NC------QSIKRAILVEGKNSHLSQSSATESTLTAL-----------GCTKIECHRF 294
>gi|444377783|ref|ZP_21176991.1| Cytidine deaminase [Enterovibrio sp. AK16]
gi|443678154|gb|ELT84827.1| Cytidine deaminase [Enterovibrio sp. AK16]
Length = 295
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 20/237 (8%)
Query: 4 PRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
P F I A + ++ +++GL+ + L+ A + PISKF+VGA+ G SGR++L
Sbjct: 27 PEFDATISAQDFAALLEETGLSDAEARVALLPVAAAYSVAPISKFYVGAIARGESGRLYL 86
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDIN 121
G N+E+ G+ L+QS+HAEQ I++ L E RL + ++ +PCGHCRQF+ EL +
Sbjct: 87 GANMEYEGVQLNQSVHAEQSAISHAWLKGETRLTDITINYSPCGHCRQFMNELSGAELLQ 146
Query: 122 ICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENP 181
+ + ER+ L LP+ FGP+D L D PLL N + E+
Sbjct: 147 VQLP-----EREAKLLHSYLPEAFGPSD-LGVDQPLLAP----------VNHGLAAKED- 189
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++A N+SHAPY++ SGVA+ D +GN++ G Y E+AA+NPSL P+Q AL
Sbjct: 190 -DELIKAAVQATNRSHAPYTRNLSGVAVRDIKGNVFTGMYAENAAFNPSLPPLQVAL 245
>gi|89074286|ref|ZP_01160776.1| cytidine deaminase [Photobacterium sp. SKA34]
gi|89049990|gb|EAR55524.1| cytidine deaminase [Photobacterium sp. SKA34]
Length = 295
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 151/284 (53%), Gaps = 24/284 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + E + ++ L+ L L+ A A PIS F+VGA+ G+SGR++ G N+E
Sbjct: 32 TISPEQFEQLVSQTNLSDTDLRLALLPVAAAYAVVPISNFYVGAIVRGTSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + +IHAEQ I++ + E ++ + ++ +PCGHCRQF+ EL D+ I +
Sbjct: 92 FEGASMACTIHAEQSAISHAWIKGETGIKDVTINYSPCGHCRQFMNELNTAQDLVIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER+ L LP+ FGP DL KD LL NG++ I E + L
Sbjct: 151 ----ERQPMTLQQYLPESFGPADLGIKDA--LLSDINNGIT-------IAE----QSELA 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA +AAN+SHAPYS SGVA+ +G ++ G Y E+AA+NPSL P+Q ALV
Sbjct: 194 VAACDAANRSHAPYSNNFSGVALKAKDGRVFVGMYAENAAFNPSLPPLQVALV------N 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
G +V AALVE ++ + Q + LL+ ++P +
Sbjct: 248 MNMSGYKLSELVEAALVESAESRISQLARTQALLEALNPDIQMT 291
>gi|157369811|ref|YP_001477800.1| cytidine deaminase [Serratia proteamaculans 568]
gi|166989834|sp|A8GC32.1|CDD_SERP5 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|157321575|gb|ABV40672.1| cytidine deaminase [Serratia proteamaculans 568]
Length = 294
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 154/285 (54%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F +++A + +++ Q+ GL L L+ A + PIS+F+VGA+ G SG
Sbjct: 24 IDAPDFPAMLKAEQVDAITQRCGLDDDALAFALLPLAAACSLAPISQFYVGAIARGQSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L EP L + V+ PCGHCRQF+ EL +
Sbjct: 84 LYFGANMEFSGAPMQQTIHAEQCAVTHAWLRGEPALASITVNYTPCGHCRQFMNELNSGV 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ L LPD FGP DL LL++ +G L
Sbjct: 144 SLKIRLPG-----REPATLGDYLPDSFGPKDL--DITTLLMDQVDHGFQLAL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AAL AAN+SHAPYS SGVA+ +G +Y G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---TDELEKAALAAANQSHAPYSNAHSGVALEAEDGTVYTGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ +G +++ A L E E A++ Q A R L +
Sbjct: 246 ILMNVSGDD------CQKVKRAVLAEPESAILTQWDATRATLAAL 284
>gi|238753404|ref|ZP_04614767.1| Cytidine deaminase [Yersinia ruckeri ATCC 29473]
gi|238708357|gb|EEQ00712.1| Cytidine deaminase [Yersinia ruckeri ATCC 29473]
Length = 294
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 147/285 (51%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ RF ++ AA+ E + SGL +L L+ A + PIS F VGA+ G SG
Sbjct: 24 LSNDRFPAMLSAAQVEMVKHISGLNDDELAFALLPLAAACSLTPISHFKVGAIARGESGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + +
Sbjct: 84 LYFGANMEFSGTPLQQTIHAEQCAVTHAWLRGETALVAITVNYTPCGHCRQFMNELNSGT 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
++I + R L+ LPD FGP DL LL++ +G
Sbjct: 144 GLHIHLPG-----RPVATLADYLPDAFGPKDLAISS--LLMDDVDHGYCL---------- 186
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
N + L AAL+AAN SHAPYSK SGVA+ D G +Y G Y E+AA+NPSL P+QAAL
Sbjct: 187 -NNSDNLIQAALDAANHSHAPYSKAHSGVALEDANGVVYAGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ G +I A L E ++ Q A R L +
Sbjct: 246 ILM------NMSGSDCLQIRRAVLAEPTTPILSQWDATRSTLAAM 284
>gi|395232979|ref|ZP_10411226.1| cytidine deaminase [Enterobacter sp. Ag1]
gi|394732759|gb|EJF32416.1| cytidine deaminase [Enterobacter sp. Ag1]
Length = 295
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 152/282 (53%), Gaps = 27/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ AAE E++ ++GL L L+ A AR +S F+VGAV G SG ++ GGN+E
Sbjct: 32 MFTAAEVEALKHQTGLGDQDLAFALLPLAAACARADLSHFNVGAVARGVSGNLYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ IT+ + E L + V+ PCGHCRQF+ EL + + + I +
Sbjct: 92 FLGATMQQTVHAEQSAITHAWMRGEKGLVDITVNYTPCGHCRQFMNELNSGTALGIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
RK L LPD FGP DL K LLL+ +G + + L
Sbjct: 152 -----RKPSTLGEYLPDAFGPRDLEIK--TLLLDEENHGFALQ------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+SHAPYSK P+GVA+ +G I+ G Y E+AA+NPSL P+QAAL L+ G
Sbjct: 193 QAAIAAANRSHAPYSKAPAGVALEMVDGKIFTGCYAENAAFNPSLPPLQAAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
Y +I A L EK DA + Q A L+ + CE
Sbjct: 252 Y-----DYPQIKRAVLAEKIDAPLLQWDATSATLKALG--CE 286
>gi|425092500|ref|ZP_18495585.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|405611726|gb|EKB84492.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
Length = 294
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 150/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDEQDHGYPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+ A+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENTAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|421492299|ref|ZP_15939660.1| CDD [Morganella morganii subsp. morganii KT]
gi|455738618|ref|YP_007504884.1| Cytidine deaminase [Morganella morganii subsp. morganii KT]
gi|400193455|gb|EJO26590.1| CDD [Morganella morganii subsp. morganii KT]
gi|455420181|gb|AGG30511.1| Cytidine deaminase [Morganella morganii subsp. morganii KT]
Length = 294
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 134/242 (55%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S+F+VGAV G SG ++ G N+EF +PL Q++HAEQ IT+ L E L+ + V+
Sbjct: 67 PVSRFNVGAVAHGLSGNLYFGANMEFCHVPLQQTVHAEQSAITHAWLRGEKGLRKVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + +D+ I + E PL LLP FGP DL K L +
Sbjct: 127 TPCGHCRQFMNELNSGTDLLIQLP-----ELAAMPLKTLLPHAFGPVDLGIKT--RLFDQ 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G F N + + ALEAAN+SHAPYS SGVA+ D G IY G+Y
Sbjct: 180 VHHGYHFLATNAVVGK-----------ALEAANRSHAPYSHSHSGVALQDSRGRIYSGAY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
+E+AA+NP L P+QAAL+ AGG I A LVE +A++ Q + L
Sbjct: 229 IENAAFNPGLPPLQAALIFMNMAGGD------LHDIHRAVLVEGSNAMLSQWESTSATLS 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|410085319|ref|ZP_11282038.1| Cytidine deaminase [Morganella morganii SC01]
gi|409768028|gb|EKN52092.1| Cytidine deaminase [Morganella morganii SC01]
Length = 294
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 134/242 (55%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S+F+VGAV G SG ++ G N+EF +PL Q++HAEQ IT+ L E L+ + V+
Sbjct: 67 PVSRFNVGAVAHGLSGNLYFGANMEFCHVPLQQTVHAEQSAITHAWLRGEKGLRKVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + +D+ I + E PL LLP FGP DL K L +
Sbjct: 127 TPCGHCRQFMNELNSGTDLLIQLP-----ELAAMPLKTLLPHAFGPVDLGIKT--RLFDQ 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G F N + + ALEAAN+SHAPYS SGVA+ D G IY G+Y
Sbjct: 180 VHHGYHFLATNAVVGK-----------ALEAANRSHAPYSHSHSGVALQDSRGRIYSGAY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
+E+AA+NP L P+QAAL+ AGG I A LVE +A++ Q + L
Sbjct: 229 IENAAFNPGLPPLQAALIFMNMAGGD------LHDIHRAVLVEGSNAMLSQWESTSATLS 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|238761081|ref|ZP_04622058.1| Cytidine deaminase [Yersinia kristensenii ATCC 33638]
gi|238761334|ref|ZP_04622310.1| Cytidine deaminase [Yersinia kristensenii ATCC 33638]
gi|238700308|gb|EEP93049.1| Cytidine deaminase [Yersinia kristensenii ATCC 33638]
gi|238700561|gb|EEP93301.1| Cytidine deaminase [Yersinia kristensenii ATCC 33638]
Length = 294
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 146/277 (52%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + E++ SGL L L+ A A PIS F VGA+ G+SG ++ G N+E
Sbjct: 32 MLTAEQVETVKSISGLDDNALAFELLPLAAACALTPISHFKVGAIARGTSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + + ++I +
Sbjct: 92 FSGTPLQQTIHAEQCAVTHAWLRNEASLVSITVNYTPCGHCRQFMNELNSGTGLHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL D+ LL + N Q + + L
Sbjct: 152 -----RPASTLGQYLPDSFGPKDL---DITTLL--------MDPVNHQYKVADT--DALT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+ AN SHAPYS SGVA+ +GNIY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALDGANHSHAPYSLSHSGVALETADGNIYAGRYAENAAFNPSLPPLQAALI---LANL 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
SG G R V LVE ++ Q A + L +
Sbjct: 251 SGKDCGAVRRAV---LVEGRQPMLTQWDATQATLAAL 284
>gi|386016419|ref|YP_005934706.1| cytidine deaminase Cdd [Pantoea ananatis AJ13355]
gi|386078712|ref|YP_005992237.1| cytidine deaminase Cdd [Pantoea ananatis PA13]
gi|327394488|dbj|BAK11910.1| cytidine deaminase Cdd [Pantoea ananatis AJ13355]
gi|354987893|gb|AER32017.1| cytidine deaminase Cdd [Pantoea ananatis PA13]
Length = 296
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 139/257 (54%), Gaps = 28/257 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + G N+EF G + Q++HAEQ +T+ L E RL+ + V+
Sbjct: 68 LSHFNVGAIARGVSGNWYFGANMEFAGATMQQTVHAEQSAVTHAWLRGESRLETITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + +DI I + +R H L+H LPD FGP DL L++
Sbjct: 128 PCGHCRQFMNELNSGTDIRISLP-----QRAVHTLAHYLPDAFGPGDL--NITERLMDDV 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
G + G + L AA++AAN+SHAPYS+ SGVA+ G I+ G Y
Sbjct: 181 DQGY---VATG---------DALSQAAVKAANRSHAPYSRAFSGVALQTASGRIFSGRYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NPSL P+QAAL+ AG S I AAAL + + Q A + L
Sbjct: 229 ENAAFNPSLPPLQAALILLNMAGES------CHDIQAAALAQTPQPALDQFSATQATLHA 282
Query: 283 ISPKCEFNVFHCGCKKS 299
+ C+ N+ H K+
Sbjct: 283 LG--CD-NLTHLTLAKA 296
>gi|425082406|ref|ZP_18485503.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|428934051|ref|ZP_19007585.1| cytidine deaminase [Klebsiella pneumoniae JHCK1]
gi|405600658|gb|EKB73823.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|426303740|gb|EKV65902.1| cytidine deaminase [Klebsiella pneumoniae JHCK1]
Length = 294
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 150/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLCAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIKT--LLMDEQDHGYPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|262275630|ref|ZP_06053439.1| cytidine deaminase [Grimontia hollisae CIP 101886]
gi|262219438|gb|EEY70754.1| cytidine deaminase [Grimontia hollisae CIP 101886]
Length = 295
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 154/287 (53%), Gaps = 28/287 (9%)
Query: 4 PRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL 61
P F I A + ++ +++GL+ + L+ A + PIS+F+VGA+ G SGR++L
Sbjct: 27 PTFDATISAQDFAALLEETGLSDKEARVALLPIAAAYSVAPISRFYVGAIARGESGRLYL 86
Query: 62 GGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDIN 121
G N+EF G+ L+ S+HAEQ I++ E L + ++ +PCGHCRQF+ EL+ +
Sbjct: 87 GANMEFEGVQLNASVHAEQSAISHAWSKGEKGLTDITINYSPCGHCRQFMNELKGADKLE 146
Query: 122 ICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENP 181
I + ER L LP+ FGP D L D PLL + + + TE
Sbjct: 147 IQLP-----ERDAKRLHAYLPEAFGPTD-LGIDQPLLTQVNHGLV-----------TEEA 189
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VA 240
E +K AA+EA N+SHAPY+ SG AI D +GNIY G Y E+AA+NPSL P+Q AL +
Sbjct: 190 DELVK-AAVEATNRSHAPYTHNLSGAAIRDNKGNIYSGMYAENAAFNPSLPPLQVALNIM 248
Query: 241 YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
LA + A LVE +A + + +L+ I+P
Sbjct: 249 NLA-------DVPLAEVKDAVLVETANASISHLQDTQAMLEAINPDI 288
>gi|238749941|ref|ZP_04611445.1| Cytidine deaminase [Yersinia rohdei ATCC 43380]
gi|238711870|gb|EEQ04084.1| Cytidine deaminase [Yersinia rohdei ATCC 43380]
Length = 294
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 134/246 (54%), Gaps = 26/246 (10%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A PIS F+VGA+ G SG ++ G N+EF G PL Q+IHAEQ +T+ L E +L +
Sbjct: 64 ALTPISHFNVGAIARGISGNLYFGANMEFGGAPLQQTIHAEQCAVTHAWLRGESQLVSIT 123
Query: 99 VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL- 157
V+ PCGHCRQF+ EL + +D++I + R L LPD FGP DL D+
Sbjct: 124 VNYTPCGHCRQFMNELNSGTDLHIHLPG-----RPASTLEKYLPDAFGPKDL---DITAR 175
Query: 158 LLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY 217
L++ +G P + L AAL AAN+SHAPYS SGVA+ +G IY
Sbjct: 176 LMDAVDHGYQV-----------EPTDALTQAALMAANQSHAPYSLSHSGVALETADGAIY 224
Query: 218 KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAAR 277
G Y E+AA+NPSL P+QAAL+ +G G I A LVE +++ Q A +
Sbjct: 225 TGRYAENAAFNPSLPPLQAALILTNLSGKDCGA------IRRAVLVEGSKSILSQWDATQ 278
Query: 278 LLLQVI 283
L +
Sbjct: 279 ATLAAL 284
>gi|291618089|ref|YP_003520831.1| Cdd [Pantoea ananatis LMG 20103]
gi|291153119|gb|ADD77703.1| Cdd [Pantoea ananatis LMG 20103]
Length = 301
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 139/257 (54%), Gaps = 28/257 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + G N+EF G + Q++HAEQ +T+ L E RL+ + V+
Sbjct: 73 LSHFNVGAIARGVSGNWYFGANMEFVGATMQQTVHAEQSAVTHAWLRGESRLETITVNYT 132
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + +DI I + +R H L+H LPD FGP DL L++
Sbjct: 133 PCGHCRQFMNELNSGTDIRISLP-----QRAVHTLAHYLPDAFGPGDL--NITERLMDDV 185
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
G + G + L AA++AAN+SHAPYS+ SGVA+ G I+ G Y
Sbjct: 186 DQGY---VATG---------DALSQAAVKAANRSHAPYSRAFSGVALQTASGRIFSGRYA 233
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NPSL P+QAAL+ AG S I AAAL + + Q A + L
Sbjct: 234 ENAAFNPSLPPLQAALILLNMAGES------CHDIQAAALAQTPQPALDQFSATQATLHA 287
Query: 283 ISPKCEFNVFHCGCKKS 299
+ C+ N+ H K+
Sbjct: 288 LG--CD-NLTHLTLAKA 301
>gi|125597841|gb|EAZ37621.1| hypothetical protein OsJ_21956 [Oryza sativa Japonica Group]
Length = 242
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 155/260 (59%), Gaps = 28/260 (10%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
AR PIS+F VGAVGLG SG I+ N+EF GLPL SIHAEQFL+ N + +L +A
Sbjct: 4 ARVPISRFPVGAVGLGMSGCIYASVNLEFRGLPLSHSIHAEQFLVVNAAAVGKSKLCAIA 63
Query: 99 VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLL 158
+S PCGHCRQFLQE+R I I +T S++ K+ +S LLP FGP+DLL K VPL+
Sbjct: 64 ISHMPCGHCRQFLQEIRGAGGIRIIVT---SSDAKWRTVSSLLPRPFGPHDLLPKHVPLV 120
Query: 159 LETHQNGMSFNLCNGQIPE---TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGN 215
L+ H + + N I + + RL+ AA AA +H PYS+CPS A+ D E
Sbjct: 121 LKPHDSPLVGNPATAVITNGFANGDLEARLREAAEAAARAAHTPYSECPSRFAVADGE-- 178
Query: 216 IYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHA 275
GP+QAA++ +AAGG+ E +VAAALVEKE A+V QE
Sbjct: 179 ----------------GPMQAAIIGMVAAGGA----AAAEDVVAAALVEKEAALVSQEAM 218
Query: 276 ARLLLQVISPKCEFNVFHCG 295
AR+ L ++P+ F+V++ G
Sbjct: 219 ARIFLAAVAPQASFHVYNFG 238
>gi|365837998|ref|ZP_09379354.1| cytidine deaminase [Hafnia alvei ATCC 51873]
gi|364560798|gb|EHM38718.1| cytidine deaminase [Hafnia alvei ATCC 51873]
Length = 294
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI A++ E++ Q +G+ +L L+ A + PISKF+VGAV G SG ++ G N+E
Sbjct: 32 VITASQVETLKQATGMNDSELAFALLPLAAACSLAPISKFYVGAVARGVSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G P+ Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + + I +
Sbjct: 92 FLGAPMQQTIHAEQCAVTHAWLRGEKALASITVNYTPCGHCRQFMNELNTGTQLAIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R+ L H LPD FGP DL K + + E H + +L +G + L
Sbjct: 152 -----RQPATLGHYLPDAFGPRDLEIKTLLMDEEDH----NLSLASG---------DALA 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN+SHAPYS+ SGVA+ +GN+Y G Y E+AA+NPSL P+QAAL+ +G
Sbjct: 194 QAALDAANRSHAPYSQAYSGVALEAADGNVYCGRYAENAAFNPSLPPLQAALILMNVSGK 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+I A LVE + + Q A + L +
Sbjct: 254 D------VLQIRRAVLVETKSTMFSQWDATQATLNAL 284
>gi|425075730|ref|ZP_18478833.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425086366|ref|ZP_18489459.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405594130|gb|EKB67553.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405605281|gb|EKB78347.1| cytidine deaminase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 294
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 150/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIKT--LLMDEQDHGYPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANCCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|218198537|gb|EEC80964.1| hypothetical protein OsI_23685 [Oryza sativa Indica Group]
Length = 242
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 155/260 (59%), Gaps = 28/260 (10%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
AR PIS+F VGAVGLG SG I+ N+EF GLPL S+HAEQFL+ N + +L +A
Sbjct: 4 ARVPISRFPVGAVGLGMSGCIYASVNLEFRGLPLSHSVHAEQFLVVNAAAVGKSKLCAIA 63
Query: 99 VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLL 158
+S PCGHCRQFLQE+R I I +T S++ K+ +S LLP FGP+DLL K VPL+
Sbjct: 64 ISHMPCGHCRQFLQEIRGAGGIRIIVT---SSDAKWRTVSSLLPRPFGPHDLLPKHVPLV 120
Query: 159 LETHQNGMSFNLCNGQIPE---TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGN 215
LE H + + N I + + RL+ AA AA +H PYS+CPS A+ D +
Sbjct: 121 LEPHDSPLVGNPATAVITNGFANGDLEARLREAAEAAARAAHTPYSECPSRFAVADGK-- 178
Query: 216 IYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHA 275
GP+QAA++ +AAGG+ E +VAAALVEKE A+V QE
Sbjct: 179 ----------------GPMQAAIIGMVAAGGA----AAAEDVVAAALVEKEAALVSQEAM 218
Query: 276 ARLLLQVISPKCEFNVFHCG 295
AR+ L ++P+ F+V++ G
Sbjct: 219 ARIFLAAVAPQASFHVYNFG 238
>gi|343498734|ref|ZP_08736753.1| cytidine deaminase [Vibrio tubiashii ATCC 19109]
gi|418479894|ref|ZP_13048964.1| cytidine deaminase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342823959|gb|EGU58541.1| cytidine deaminase [Vibrio tubiashii ATCC 19109]
gi|384572542|gb|EIF03058.1| cytidine deaminase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 295
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 157/281 (55%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + + E + SGL +L L+ A + P+SKF+VGA+ G SG+++ G NVE
Sbjct: 32 TISSEQFEQLLAISGLEDAELRVLLLPFAAAYSYAPLSKFYVGAIVRGLSGKLYFGANVE 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL +++ I +
Sbjct: 92 FDGVQLGQTVHAEQSAISHAWMKGEQGVADITINYSPCGHCRQFMNELSTANELKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R+ PL + LP+ FGP+DL ++ + ++ +G+ +T+ E L+
Sbjct: 151 ----KREGQPLHYYLPESFGPSDL----------GIESALMTSVDHGK--QTQEQDELLQ 194
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+ A N+SHAPY+ SGVAI +G +Y+G+Y E+AA+NPSL P+Q AL+ L
Sbjct: 195 L-AVAALNRSHAPYTHNLSGVAIKTKDGKVYQGAYAENAAFNPSLPPLQVALIQLLLDRK 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E I +AALVE ED + + L+ ++P
Sbjct: 254 E------LESIDSAALVEVEDGTISHLANTQATLEALNPDI 288
>gi|206579041|ref|YP_002237435.1| cytidine deaminase [Klebsiella pneumoniae 342]
gi|226701682|sp|B5XP65.1|CDD_KLEP3 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|206568099|gb|ACI09875.1| cytidine deaminase [Klebsiella pneumoniae 342]
Length = 294
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ Q +GL L L+ A AR +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDAQDHGFPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|37198892|dbj|BAC94726.1| cytidine deaminase [Vibrio vulnificus YJ016]
Length = 302
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 24/280 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ + + + +++G+T QL L+ A + PIS+F+VGA+ G SG ++ G N+EF
Sbjct: 40 LSTVQFDELLKQTGMTDNQLRVALLPFAAAYSYAPISEFYVGAIVRGLSGTLYFGANMEF 99
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G+ L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL + ++ I +
Sbjct: 100 DGVQLGQTVHAEQSAISHAWMKGEQGLSDITINFSPCGHCRQFMNELSSAKELKIQLP-- 157
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER+ L LPD FGP+D L + L+ + H +G + TE+ + L
Sbjct: 158 ---EREEKKLHDYLPDSFGPSD-LGIESALMSQVH-HGFA----------TED-DDALMQ 201
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EA N+SHAPY+ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 202 RAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLAGER 261
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + L+ ++P
Sbjct: 262 ------FENIQSAALVESHKGKISHLACTQSTLEALNPDI 295
>gi|375131183|ref|YP_004993283.1| cytidine deaminase [Vibrio furnissii NCTC 11218]
gi|315180357|gb|ADT87271.1| cytidine deaminase [Vibrio furnissii NCTC 11218]
Length = 295
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 143/258 (55%), Gaps = 24/258 (9%)
Query: 30 TLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN 89
TL+ A A PISKF+VGA+ G SGR++ GGN+EF G+ L Q+IHAEQ I++ +
Sbjct: 55 TLLPLAAAYAYVPISKFYVGAIVRGLSGRLYFGGNMEFSGVQLGQTIHAEQAAISHAWMK 114
Query: 90 AEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149
E L + V+ +PCGHCRQF+ EL + ++I + +R+ L + LP+ FGP D
Sbjct: 115 GEEGLADITVNYSPCGHCRQFMNELNTSKTLSIQLP-----QREEKSLQYYLPESFGPAD 169
Query: 150 LLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAI 209
L ++ + N+ +G+ + E P L AL A N+SHAPY+ SGVA+
Sbjct: 170 L----------GIESALMANVNHGKTSDDEEP---LVQKALVALNRSHAPYTANLSGVAL 216
Query: 210 MDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAV 269
G Y G+Y E+AA+NPSL P+Q AL+ AG + ++ I +AAL E +
Sbjct: 217 QTTSGQQYLGAYAENAAFNPSLPPLQVALIQLRMAGET------FDTIESAALAEMAEGS 270
Query: 270 VRQEHAARLLLQVISPKC 287
+ + L+ I+P
Sbjct: 271 ISHLADTQSTLEAINPDI 288
>gi|260768655|ref|ZP_05877589.1| cytidine deaminase [Vibrio furnissii CIP 102972]
gi|260616685|gb|EEX41870.1| cytidine deaminase [Vibrio furnissii CIP 102972]
Length = 295
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 143/258 (55%), Gaps = 24/258 (9%)
Query: 30 TLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN 89
TL+ A A PISKF+VGA+ G SGR++ GGN+EF G+ L Q+IHAEQ I++ +
Sbjct: 55 TLLPLAAAYAYVPISKFYVGAIVRGLSGRLYFGGNMEFSGVQLGQTIHAEQAAISHAWMK 114
Query: 90 AEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149
E L + V+ +PCGHCRQF+ EL + ++I + +R+ L + LP+ FGP D
Sbjct: 115 GEEGLADITVNYSPCGHCRQFMNELNTSKTLSIQLP-----QREEKSLQYYLPESFGPAD 169
Query: 150 LLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAI 209
L ++ + N+ +G+ + E P L AL A N+SHAPY+ SGVA+
Sbjct: 170 L----------GIESALMANVNHGKTSDDEEP---LVQQALVALNRSHAPYTANLSGVAL 216
Query: 210 MDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAV 269
G Y G+Y E+AA+NPSL P+Q AL+ AG + ++ I +AAL E +
Sbjct: 217 QTTSGQQYLGAYAENAAFNPSLPPLQVALIQLRMAGET------FDTIESAALAEMAEGS 270
Query: 270 VRQEHAARLLLQVISPKC 287
+ + L+ I+P
Sbjct: 271 ISHLADTQSTLEAINPDI 288
>gi|303277041|ref|XP_003057814.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460471|gb|EEH57765.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 373
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 166/323 (51%), Gaps = 38/323 (11%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FV+ A ++ + G + LL V + Q A PP S+F+VGA LG+SG +FLG NV
Sbjct: 42 FVVAADAMAALLRARGADAIDLLHEFVGTTQKYAIPPTSRFYVGAAALGASGAVFLGVNV 101
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
EFPGLPL+ S+HAEQF + + E RL +A +AAPCGHCRQF+ ELR+ S++ C+
Sbjct: 102 EFPGLPLNASVHAEQFALVTALRANETRLVAIATTAAPCGHCRQFMNELRHASEL-CCVI 160
Query: 126 SINSNERKYHP--------LSHLLPDRFGPNDLL-DKDVPLLLETHQNGMSF-------- 168
++ P L LLP FGP DL D +PLLLE+ N ++F
Sbjct: 161 PEDAKAPGGRPGAKFARYALRELLPHSFGPLDLTHDVKLPLLLESRHNRLAFADDDDGGG 220
Query: 169 -------NLCNGQIPETENPKERLKYAALEAANK-----SHAPYSKCPSGVAIMDCEGNI 216
+ G +ER AA ++APYS P+G+A+ G +
Sbjct: 221 GGGGATTSGGGGGGGGGATGRERENAAAEALLATREACFAYAPYSHSPAGLALTTSSGGV 280
Query: 217 YKGSYMESAAYNPSLGPVQAALVAYL--------AAGGSGGGGGGYERIVAAALVEKEDA 268
Y G +ESAAYNPS+ P+ ALVA GG GGGG G + +A L E + A
Sbjct: 281 YAGRSVESAAYNPSMSPLHVALVAATCGERYSEDGGGGGGGGGDGGWGVTSATLAEVDGA 340
Query: 269 VVRQEHAARLLLQVISPKCEFNV 291
V E RL+L VI+P V
Sbjct: 341 AVSYEGWCRLMLGVIAPGVALTV 363
>gi|417792049|ref|ZP_12439458.1| cytidine deaminase [Cronobacter sakazakii E899]
gi|449307569|ref|YP_007439925.1| cytidine deaminase [Cronobacter sakazakii SP291]
gi|333953851|gb|EGL71744.1| cytidine deaminase [Cronobacter sakazakii E899]
gi|449097602|gb|AGE85636.1| cytidine deaminase [Cronobacter sakazakii SP291]
Length = 294
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 147/278 (52%), Gaps = 27/278 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ GGN+E
Sbjct: 32 MLSAEQVADVRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGNLYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 145
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL K L+ +T +G + + L
Sbjct: 146 RINLPGRAPSQLGDYLPDAFGPRDLDIK--TLIFDTENHGYALK------------GDAL 191
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+AI +G I+ GSY E+AA+NPSL P+QAAL
Sbjct: 192 TQAAITAANRSHAPYSQSPSGLAIETRDGEIFTGSYAENAAFNPSLPPLQAALNLM---- 247
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I AL E++DA + Q A L+ +
Sbjct: 248 --SLNGYAWADIKRVALAERDDATIVQRDATAATLKAL 283
>gi|288934359|ref|YP_003438418.1| cytidine deaminase [Klebsiella variicola At-22]
gi|288889088|gb|ADC57406.1| cytidine deaminase [Klebsiella variicola At-22]
Length = 294
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ Q +GL L L+ A AR +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDAQDHGYPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|161486621|ref|NP_934755.2| cytidine deaminase [Vibrio vulnificus YJ016]
gi|85540974|sp|Q7MK48.2|CDD_VIBVY RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
Length = 295
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 24/280 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ + + + +++G+T QL L+ A + PIS+F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSTVQFDELLKQTGMTDNQLRVALLPFAAAYSYAPISEFYVGAIVRGLSGTLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G+ L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL + ++ I +
Sbjct: 93 DGVQLGQTVHAEQSAISHAWMKGEQGLSDITINFSPCGHCRQFMNELSSAKELKIQLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER+ L LPD FGP+D L + L+ + H +G + TE+ + L
Sbjct: 151 ---EREEKKLHDYLPDSFGPSD-LGIESALMSQVH-HGFA----------TED-DDALMQ 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EA N+SHAPY+ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 195 RAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLAGER 254
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + L+ ++P
Sbjct: 255 ------FENIQSAALVESHKGKISHLACTQSTLEALNPDI 288
>gi|326423993|ref|NP_761226.3| cytidine deaminase [Vibrio vulnificus CMCP6]
gi|27361847|gb|AAO10753.1| cytidine deaminase [Vibrio vulnificus CMCP6]
Length = 302
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 24/280 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ + + + +++G+T QL L+ A + PIS+F+VGA+ G SG ++ G N+EF
Sbjct: 40 LSTVQFDELLKQTGMTDNQLRVALLPFAAAYSYAPISEFYVGAIVRGLSGALYFGANMEF 99
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G+ L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL + ++ I +
Sbjct: 100 DGVQLGQTVHAEQSAISHAWMKGEQGLSDITINFSPCGHCRQFMNELSSAKELKIQLP-- 157
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER+ L LPD FGP+D L + L+ + H +G + TE+ + L
Sbjct: 158 ---EREEKKLHDYLPDSFGPSD-LGIESALMSQVH-HGFA----------TED-DDALMQ 201
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EA N+SHAPY+ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 202 RAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLAGER 261
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + L+ ++P
Sbjct: 262 ------FENIQSAALVESHKGKISHLACTQSTLEALNPDI 295
>gi|261822217|ref|YP_003260323.1| cytidine deaminase [Pectobacterium wasabiae WPP163]
gi|261606230|gb|ACX88716.1| cytidine deaminase [Pectobacterium wasabiae WPP163]
gi|385872517|gb|AFI91037.1| Cytidine deaminase [Pectobacterium sp. SCC3193]
Length = 296
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 153/283 (54%), Gaps = 28/283 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+++P F ++ A + ++ + S L L L+ A A+ IS F VGA+ G SG
Sbjct: 24 LDKPDFAAMLTADDVNAICEASQLDTDALAFALLPLAAACAQASISHFQVGAIAQGLSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF + L Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ ELRN +
Sbjct: 84 FYFGANMEFTAVQLQQTVHAEQSAISHAWLRNERGLRAVTVNYTPCGHCRQFMNELRNAA 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPE 177
+ I + R+ LSH LPD FGP DL +D LL++ +G + N
Sbjct: 144 SLRIQLPG-----RQPAVLSHYLPDAFGPIDLNIDT---LLMDDINHGATLQNVNA---- 191
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
L AL+AAN+SHAPYSK SG+A+ GN+Y G Y E+AA+NPSL P+QAA
Sbjct: 192 -------LARQALDAANRSHAPYSKAISGIALETASGNLYAGRYAENAAFNPSLPPLQAA 244
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
L AG I AA+VE+ +A V ++++L
Sbjct: 245 LNLMNLAGEDP------RTITHAAVVERRNATVSHWTISQIML 281
>gi|333926402|ref|YP_004499981.1| Cytidine deaminase [Serratia sp. AS12]
gi|333931355|ref|YP_004504933.1| Cytidine deaminase [Serratia plymuthica AS9]
gi|386328225|ref|YP_006024395.1| Cytidine deaminase [Serratia sp. AS13]
gi|333472962|gb|AEF44672.1| Cytidine deaminase [Serratia plymuthica AS9]
gi|333490462|gb|AEF49624.1| Cytidine deaminase [Serratia sp. AS12]
gi|333960558|gb|AEG27331.1| Cytidine deaminase [Serratia sp. AS13]
Length = 294
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 150/285 (52%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F + A + +++ Q+ GL L L+ A + PIS FHVGA+ G SG
Sbjct: 24 FDAPDFPAMFRAEQVDAIKQRCGLDDDALAFALLPLAAACSLAPISHFHVGAIARGQSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L EP L + V+ PCGHCRQF+ EL + +
Sbjct: 84 LYFGANMEFSGAPMQQTIHAEQCAVTHAWLRGEPGLVSITVNYTPCGHCRQFMNELNSGA 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ L LPD FGP DL LL++ G L
Sbjct: 144 GLQIRLPG-----REPATLGDYLPDSFGPKDL--DIATLLMDRVDQGYQLTL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AAL AAN+SHAPYS SGVA+ +G IY G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---SDELEKAALAAANQSHAPYSNAHSGVALEAEDGTIYAGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ +G +I A L E + A++ Q A R L+ +
Sbjct: 246 ILLNVSGRD------CRKIRRAVLAEPQTAILTQWDATRATLEAL 284
>gi|383189371|ref|YP_005199499.1| cytidine deaminase, homodimeric [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371587629|gb|AEX51359.1| cytidine deaminase, homodimeric [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 296
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 152/282 (53%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ AA+ + Q +GL L L+ A + PIS F+VGAV G+SG ++ G N+E
Sbjct: 34 MLTAADVAQVKQATGLDDDALAFALLPLAAACSVTPISHFNVGAVARGTSGNLYFGANME 93
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G P+ Q++HAEQ +T+ L E RL + V+ PCGHCRQF+ EL + + ++I +
Sbjct: 94 FAGAPMQQTVHAEQSAVTHAWLRGETRLASITVNYTPCGHCRQFMNELTSGTALDIHLP- 152
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R+ L LP FGP DL D+ LL N +G + +P L
Sbjct: 153 ----DREVATLGDYLPHSFGPKDL---DITTLLMDKVN-------HGYTLKNADP---LA 195
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+A N+SHAPYSK SGVA+ G + G Y E+AA+NP L P+QAAL+ +G
Sbjct: 196 LIALDACNQSHAPYSKSHSGVALETHNGKQFGGRYAENAAFNPGLPPLQAALILLNMSGE 255
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
++ A LVE++ A++ Q A R L+ + CE
Sbjct: 256 D------CLKVRRAVLVEQKGALITQSDATRATLKALG--CE 289
>gi|378580314|ref|ZP_09828972.1| cytidine/deoxycytidine deaminase [Pantoea stewartii subsp.
stewartii DC283]
gi|377817123|gb|EHU00221.1| cytidine/deoxycytidine deaminase [Pantoea stewartii subsp.
stewartii DC283]
Length = 294
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 133/241 (55%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S+F+VGA+ G SG + G N+EF G + Q++HAEQ +T+ L E RL+ + V+
Sbjct: 68 LSRFNVGAIARGISGNWYFGANMEFAGATMQQTVHAEQSAVTHAWLRGEARLETITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I I + +R L+H LPD FGP DL + L++
Sbjct: 128 PCGHCRQFMNELNSGTAIRISLP-----QRPVQTLAHYLPDAFGPGDLHITE--RLMDKV 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + L AA++AAN+SHAPYS+ SGVA+ G I+ G Y
Sbjct: 181 DHGFVVT------------GDALSQAAIDAANQSHAPYSRAFSGVAVQTASGRIFSGRYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NPSL P+QAAL+ AG S E I AAAL + + Q A + L+
Sbjct: 229 ENAAFNPSLPPLQAALILLNMAGES------CEAIQAAALAQPRQPALDQYSATQATLRA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|320156105|ref|YP_004188484.1| cytidine deaminase [Vibrio vulnificus MO6-24/O]
gi|85540973|sp|Q8DA31.2|CDD_VIBVU RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|319931417|gb|ADV86281.1| cytidine deaminase [Vibrio vulnificus MO6-24/O]
Length = 295
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 24/280 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ + + + +++G+T QL L+ A + PIS+F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSTVQFDELLKQTGMTDNQLRVALLPFAAAYSYAPISEFYVGAIVRGLSGALYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G+ L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL + ++ I +
Sbjct: 93 DGVQLGQTVHAEQSAISHAWMKGEQGLSDITINFSPCGHCRQFMNELSSAKELKIQLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER+ L LPD FGP+D L + L+ + H +G + TE+ + L
Sbjct: 151 ---EREEKKLHDYLPDSFGPSD-LGIESALMSQVH-HGFA----------TED-DDALMQ 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EA N+SHAPY+ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 195 RAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLAGER 254
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + L+ ++P
Sbjct: 255 ------FENIQSAALVESHKGKISHLACTQSTLEALNPDI 288
>gi|421081641|ref|ZP_15542551.1| Cytidine deaminase [Pectobacterium wasabiae CFBP 3304]
gi|401703730|gb|EJS93943.1| Cytidine deaminase [Pectobacterium wasabiae CFBP 3304]
Length = 296
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 132/239 (55%), Gaps = 26/239 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
IS F VGAV G SG + G N+EF + L Q++HAEQ I++ L E L+ + V+
Sbjct: 68 ISHFQVGAVAQGLSGNFYFGANMEFTAVQLQQTVHAEQSAISHAWLRNERGLRAVTVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLET 161
PCGHCRQF+ ELRN + + I + R+ LSH LPD FGP DL +D LL++
Sbjct: 128 PCGHCRQFMNELRNAASLRIQLPG-----RQPAVLSHYLPDAFGPVDLNIDT---LLMDD 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + N L AL+AAN+SHAPYSK SG+A+ GN+Y G Y
Sbjct: 180 INHGTTLQNVN-----------TLARQALDAANRSHAPYSKAISGIALETASGNLYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
E+AA+NPSL P+Q AL AG I AA+VE+ +A V ++++L
Sbjct: 229 AENAAFNPSLPPLQTALNLMNLAGEDP------RTITHAAIVERRNATVSHWAISQIML 281
>gi|163752569|ref|ZP_02159752.1| cytidine deaminase [Shewanella benthica KT99]
gi|161327542|gb|EDP98743.1| cytidine deaminase [Shewanella benthica KT99]
Length = 296
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + + SGLT +LL L+ A TLARPPIS FHVGA+ G SG I++GGN+E
Sbjct: 32 IDALQLAGLVKASGLTEEKLLLVLLPVAATLARPPISDFHVGAIAKGKSGDIYMGGNMEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+ +PCGHCRQF+ EL + + I +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGETQIVDIVVNFSPCGHCRQFMNELVEGAQVRIHLP-- 149
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
E+K PL+H LP FGP+D L+ PLL + H +S + + I E
Sbjct: 150 ---EQKTQPLTHYLPYAFGPSD-LNVTAPLLSKQHHE-LSLDSSDPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AL+ A+ S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -ALDHASLSYAPYTRSFAAVVLQTKDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|260914212|ref|ZP_05920685.1| cytidine deaminase [Pasteurella dagmatis ATCC 43325]
gi|260631845|gb|EEX50023.1| cytidine deaminase [Pasteurella dagmatis ATCC 43325]
Length = 298
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 131/235 (55%), Gaps = 18/235 (7%)
Query: 13 AESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPL 72
+ + +K L QL L+ + PISKF+V AV +G SG + G N+EF +
Sbjct: 43 VDHLCKKYTLNRQQLALKLLPIGTAYSHAPISKFYVSAVAIGISGNFYFGANLEFSSTNI 102
Query: 73 HQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNER 132
Q++HAEQ I++ +N E + + V+ PCGHCRQF+ ELR + I + ++N+
Sbjct: 103 QQTVHAEQSAISHAWMNNEKGITDIVVNYTPCGHCRQFMNELRTAPQLEIHLPHSSNNK- 161
Query: 133 KYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEA 192
L LPD FGP DL ++ LL+ H N +++ +TENP L AL+A
Sbjct: 162 ----LHSYLPDSFGPADLNIEN--FLLDAHDNKLNY--------DTENP---LILTALQA 204
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AN SHAPYS GVAI + IYKGSY E+AA+NPSL +Q A+ L +G S
Sbjct: 205 ANSSHAPYSSSYHGVAIETQDKQIYKGSYAENAAFNPSLPALQVAINHLLLSGDS 259
>gi|153801924|ref|ZP_01956510.1| cytidine deaminase [Vibrio cholerae MZO-3]
gi|124122569|gb|EAY41312.1| cytidine deaminase [Vibrio cholerae MZO-3]
Length = 295
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 149/281 (53%), Gaps = 26/281 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ C G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMCSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPD 287
>gi|336251247|ref|YP_004594957.1| cytidine deaminase [Enterobacter aerogenes KCTC 2190]
gi|444350489|ref|YP_007386633.1| Cytidine deaminase (EC 3.5.4.5) [Enterobacter aerogenes EA1509E]
gi|334737303|gb|AEG99678.1| cytidine deaminase [Enterobacter aerogenes KCTC 2190]
gi|443901319|emb|CCG29093.1| Cytidine deaminase (EC 3.5.4.5) [Enterobacter aerogenes EA1509E]
Length = 294
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ Q +GL L L+ A AR +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHSLQHYLPDAFGPKDLEIK--TLLMDEQDHGFPLS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSNSPSGVALELKDGTIFCGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPDIQRALLAEKADASLIQWDATVATLKAL 283
>gi|332161108|ref|YP_004297685.1| cytidine deaminase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|386309138|ref|YP_006005194.1| cytidine deaminase [Yersinia enterocolitica subsp. palearctica Y11]
gi|418241970|ref|ZP_12868490.1| cytidine deaminase [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550218|ref|ZP_20506262.1| Cytidine deaminase [Yersinia enterocolitica IP 10393]
gi|318604988|emb|CBY26486.1| cytidine deaminase [Yersinia enterocolitica subsp. palearctica Y11]
gi|325665338|gb|ADZ41982.1| cytidine deaminase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330859348|emb|CBX69694.1| cytidine deaminase [Yersinia enterocolitica W22703]
gi|351778639|gb|EHB20784.1| cytidine deaminase [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789353|emb|CCO69302.1| Cytidine deaminase [Yersinia enterocolitica IP 10393]
Length = 298
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 132/242 (54%), Gaps = 20/242 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F VGA+ G SG ++ G N+EF G PL Q+IHAEQ +T+ L E L + V+
Sbjct: 67 PVSNFKVGAIARGISGNLYFGANMEFSGAPLQQTIHAEQCAVTHAWLRNEASLVSITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + ++I + + R L LPD FGP DL LL+++
Sbjct: 127 TPCGHCRQFMNELNSGTGLHIYLPN-----RPASTLGQYLPDSFGPKDL--NITTLLMDS 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
G +P+T++ L AL+ AN SHAPYS SGVA+ +G IY G Y
Sbjct: 180 INKGEGHGYT---LPDTDS----LTQHALKGANYSHAPYSNSHSGVALEAADGTIYTGRY 232
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ AG G I A LVE V+ Q +A + L
Sbjct: 233 AENAAFNPSLPPLQAALILTNLAGKDCGA------IRRAVLVEGSKPVLTQWNATQATLA 286
Query: 282 VI 283
+
Sbjct: 287 AL 288
>gi|238919199|ref|YP_002932714.1| cytidine deaminase, putative [Edwardsiella ictaluri 93-146]
gi|259585868|sp|C5BCM4.1|CDD_EDWI9 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|238868768|gb|ACR68479.1| cytidine deaminase, putative [Edwardsiella ictaluri 93-146]
Length = 295
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 145/277 (52%), Gaps = 23/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI AA+ +++ L L L+ A A PIS F VGA+ G+SG ++ G N+E
Sbjct: 32 VITAAQVDAIGHACHLDRQALSFALLPLAAAYALTPISHFQVGAIVHGASGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G PL Q+IHAEQ IT+ L E L + V+ PCGHCRQF+ EL + + + I +
Sbjct: 92 FSGTPLQQTIHAEQCAITHAWLRGETALASITVNCTPCGHCRQFMNELNSGTSLPIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL K + LL TH M N + + L+
Sbjct: 152 -----RHTATLGDYLPDAFGPRDLQIKTL-LLDPTHHGLMLDNAAS----------DPLQ 195
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN SHAPYS+ SGVA+ + +Y G Y E+AA+NPSL P+QAAL+
Sbjct: 196 QAALDAANASHAPYSQAYSGVAV-ETPRAVYAGRYAENAAFNPSLPPLQAALIL------ 248
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G I AALVE A + Q A R LQ +
Sbjct: 249 PNMSGDNVNAIRRAALVESRQAPLSQYAATRATLQAL 285
>gi|22126535|ref|NP_669958.1| cytidine deaminase [Yersinia pestis KIM10+]
gi|45441227|ref|NP_992766.1| cytidine deaminase [Yersinia pestis biovar Microtus str. 91001]
gi|108806804|ref|YP_650720.1| cytidine deaminase [Yersinia pestis Antiqua]
gi|108812628|ref|YP_648395.1| cytidine deaminase [Yersinia pestis Nepal516]
gi|145598746|ref|YP_001162822.1| cytidine deaminase [Yersinia pestis Pestoides F]
gi|149366433|ref|ZP_01888467.1| cytidine deaminase [Yersinia pestis CA88-4125]
gi|153947021|ref|YP_001401431.1| cytidine deaminase [Yersinia pseudotuberculosis IP 31758]
gi|162418189|ref|YP_001607390.1| cytidine deaminase [Yersinia pestis Angola]
gi|165924607|ref|ZP_02220439.1| cytidine deaminase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939620|ref|ZP_02228164.1| cytidine deaminase [Yersinia pestis biovar Orientalis str. IP275]
gi|166009352|ref|ZP_02230250.1| cytidine deaminase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211692|ref|ZP_02237727.1| cytidine deaminase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167400363|ref|ZP_02305876.1| cytidine deaminase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167421843|ref|ZP_02313596.1| cytidine deaminase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167424271|ref|ZP_02316024.1| cytidine deaminase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167469199|ref|ZP_02333903.1| cytidine deaminase [Yersinia pestis FV-1]
gi|170024786|ref|YP_001721291.1| cytidine deaminase [Yersinia pseudotuberculosis YPIII]
gi|218928653|ref|YP_002346528.1| cytidine deaminase [Yersinia pestis CO92]
gi|229843604|ref|ZP_04463747.1| cytidine/deoxycytidine deaminase [Yersinia pestis biovar Orientalis
str. India 195]
gi|229894292|ref|ZP_04509475.1| cytidine/deoxycytidine deaminase [Yersinia pestis Pestoides A]
gi|229903023|ref|ZP_04518139.1| cytidine/deoxycytidine deaminase [Yersinia pestis Nepal516]
gi|270486815|ref|ZP_06203889.1| cytidine deaminase [Yersinia pestis KIM D27]
gi|294503489|ref|YP_003567551.1| cytidine deaminase [Yersinia pestis Z176003]
gi|384121936|ref|YP_005504556.1| cytidine deaminase [Yersinia pestis D106004]
gi|384126065|ref|YP_005508679.1| cytidine deaminase [Yersinia pestis D182038]
gi|384140605|ref|YP_005523307.1| cytidine deaminase [Yersinia pestis A1122]
gi|384415113|ref|YP_005624475.1| cytidine/deoxycytidine deaminase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420546255|ref|ZP_15044263.1| cytidine deaminase [Yersinia pestis PY-01]
gi|420551567|ref|ZP_15049016.1| cytidine deaminase [Yersinia pestis PY-02]
gi|420557107|ref|ZP_15053904.1| cytidine deaminase [Yersinia pestis PY-03]
gi|420562651|ref|ZP_15058782.1| cytidine deaminase [Yersinia pestis PY-04]
gi|420567662|ref|ZP_15063322.1| cytidine deaminase [Yersinia pestis PY-05]
gi|420573346|ref|ZP_15068471.1| cytidine deaminase [Yersinia pestis PY-06]
gi|420578644|ref|ZP_15073274.1| cytidine deaminase [Yersinia pestis PY-07]
gi|420584015|ref|ZP_15078154.1| cytidine deaminase [Yersinia pestis PY-08]
gi|420589171|ref|ZP_15082798.1| cytidine deaminase [Yersinia pestis PY-09]
gi|420594490|ref|ZP_15087587.1| cytidine deaminase [Yersinia pestis PY-10]
gi|420600178|ref|ZP_15092672.1| cytidine deaminase [Yersinia pestis PY-11]
gi|420605644|ref|ZP_15097563.1| cytidine deaminase [Yersinia pestis PY-12]
gi|420610988|ref|ZP_15102392.1| cytidine deaminase [Yersinia pestis PY-13]
gi|420616319|ref|ZP_15107098.1| cytidine deaminase [Yersinia pestis PY-14]
gi|420621702|ref|ZP_15111863.1| cytidine deaminase [Yersinia pestis PY-15]
gi|420626740|ref|ZP_15116432.1| cytidine deaminase [Yersinia pestis PY-16]
gi|420631951|ref|ZP_15121131.1| cytidine deaminase [Yersinia pestis PY-19]
gi|420637054|ref|ZP_15125708.1| cytidine deaminase [Yersinia pestis PY-25]
gi|420642608|ref|ZP_15130738.1| cytidine deaminase [Yersinia pestis PY-29]
gi|420647794|ref|ZP_15135465.1| cytidine deaminase [Yersinia pestis PY-32]
gi|420653431|ref|ZP_15140528.1| cytidine deaminase [Yersinia pestis PY-34]
gi|420658944|ref|ZP_15145488.1| cytidine deaminase [Yersinia pestis PY-36]
gi|420664258|ref|ZP_15150237.1| cytidine deaminase [Yersinia pestis PY-42]
gi|420669209|ref|ZP_15154735.1| cytidine deaminase [Yersinia pestis PY-45]
gi|420674524|ref|ZP_15159572.1| cytidine deaminase [Yersinia pestis PY-46]
gi|420680085|ref|ZP_15164606.1| cytidine deaminase [Yersinia pestis PY-47]
gi|420685351|ref|ZP_15169321.1| cytidine deaminase [Yersinia pestis PY-48]
gi|420690542|ref|ZP_15173910.1| cytidine deaminase [Yersinia pestis PY-52]
gi|420696332|ref|ZP_15178984.1| cytidine deaminase [Yersinia pestis PY-53]
gi|420701792|ref|ZP_15183589.1| cytidine deaminase [Yersinia pestis PY-54]
gi|420707667|ref|ZP_15188441.1| cytidine deaminase [Yersinia pestis PY-55]
gi|420713032|ref|ZP_15193250.1| cytidine deaminase [Yersinia pestis PY-56]
gi|420718454|ref|ZP_15197989.1| cytidine deaminase [Yersinia pestis PY-58]
gi|420724020|ref|ZP_15202797.1| cytidine deaminase [Yersinia pestis PY-59]
gi|420729627|ref|ZP_15207811.1| cytidine deaminase [Yersinia pestis PY-60]
gi|420734672|ref|ZP_15212371.1| cytidine deaminase [Yersinia pestis PY-61]
gi|420740145|ref|ZP_15217297.1| cytidine deaminase [Yersinia pestis PY-63]
gi|420745580|ref|ZP_15222034.1| cytidine deaminase [Yersinia pestis PY-64]
gi|420751284|ref|ZP_15226958.1| cytidine deaminase [Yersinia pestis PY-65]
gi|420756658|ref|ZP_15231548.1| cytidine deaminase [Yersinia pestis PY-66]
gi|420762396|ref|ZP_15236297.1| cytidine deaminase [Yersinia pestis PY-71]
gi|420766439|ref|ZP_15239977.1| cytidine deaminase [Yersinia pestis PY-72]
gi|420772635|ref|ZP_15245519.1| cytidine deaminase [Yersinia pestis PY-76]
gi|420778083|ref|ZP_15250370.1| cytidine deaminase [Yersinia pestis PY-88]
gi|420783625|ref|ZP_15255221.1| cytidine deaminase [Yersinia pestis PY-89]
gi|420788925|ref|ZP_15259912.1| cytidine deaminase [Yersinia pestis PY-90]
gi|420794399|ref|ZP_15264849.1| cytidine deaminase [Yersinia pestis PY-91]
gi|420799515|ref|ZP_15269449.1| cytidine deaminase [Yersinia pestis PY-92]
gi|420804863|ref|ZP_15274267.1| cytidine deaminase [Yersinia pestis PY-93]
gi|420810146|ref|ZP_15279044.1| cytidine deaminase [Yersinia pestis PY-94]
gi|420815819|ref|ZP_15284138.1| cytidine deaminase [Yersinia pestis PY-95]
gi|420821012|ref|ZP_15288825.1| cytidine deaminase [Yersinia pestis PY-96]
gi|420826099|ref|ZP_15293381.1| cytidine deaminase [Yersinia pestis PY-98]
gi|420831852|ref|ZP_15298588.1| cytidine deaminase [Yersinia pestis PY-99]
gi|420836693|ref|ZP_15302948.1| cytidine deaminase [Yersinia pestis PY-100]
gi|420841856|ref|ZP_15307626.1| cytidine deaminase [Yersinia pestis PY-101]
gi|420847484|ref|ZP_15312701.1| cytidine deaminase [Yersinia pestis PY-102]
gi|420850964|ref|ZP_15315835.1| cytidine deaminase [Yersinia pestis PY-103]
gi|420858408|ref|ZP_15322151.1| cytidine deaminase [Yersinia pestis PY-113]
gi|421762976|ref|ZP_16199773.1| cytidine deaminase [Yersinia pestis INS]
gi|81594333|sp|Q8ZG08.1|CDD_YERPE RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|123073300|sp|Q1CGT5.1|CDD_YERPN RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|123245922|sp|Q1C9U7.1|CDD_YERPA RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167008667|sp|A7FJK3.1|CDD_YERP3 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167008668|sp|A4TKN7.1|CDD_YERPP RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701696|sp|A9R1B9.1|CDD_YERPG RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701697|sp|B1JPZ5.1|CDD_YERPY RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|21959536|gb|AAM86209.1|AE013868_3 cytidine/deoxycytidine deaminase [Yersinia pestis KIM10+]
gi|45436087|gb|AAS61643.1| cytidine deaminase [Yersinia pestis biovar Microtus str. 91001]
gi|108776276|gb|ABG18795.1| cytidine deaminase [Yersinia pestis Nepal516]
gi|108778717|gb|ABG12775.1| cytidine deaminase [Yersinia pestis Antiqua]
gi|115347264|emb|CAL20158.1| cytidine deaminase [Yersinia pestis CO92]
gi|145210442|gb|ABP39849.1| cytidine deaminase [Yersinia pestis Pestoides F]
gi|149290807|gb|EDM40882.1| cytidine deaminase [Yersinia pestis CA88-4125]
gi|152958516|gb|ABS45977.1| cytidine deaminase [Yersinia pseudotuberculosis IP 31758]
gi|162351004|gb|ABX84952.1| cytidine deaminase [Yersinia pestis Angola]
gi|165912417|gb|EDR31050.1| cytidine deaminase [Yersinia pestis biovar Orientalis str. IP275]
gi|165923667|gb|EDR40799.1| cytidine deaminase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991907|gb|EDR44208.1| cytidine deaminase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207463|gb|EDR51943.1| cytidine deaminase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166960328|gb|EDR56349.1| cytidine deaminase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050312|gb|EDR61720.1| cytidine deaminase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057120|gb|EDR66883.1| cytidine deaminase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169751320|gb|ACA68838.1| cytidine deaminase [Yersinia pseudotuberculosis YPIII]
gi|229679933|gb|EEO76033.1| cytidine/deoxycytidine deaminase [Yersinia pestis Nepal516]
gi|229689212|gb|EEO81275.1| cytidine/deoxycytidine deaminase [Yersinia pestis biovar Orientalis
str. India 195]
gi|229703690|gb|EEO90706.1| cytidine/deoxycytidine deaminase [Yersinia pestis Pestoides A]
gi|262361532|gb|ACY58253.1| cytidine deaminase [Yersinia pestis D106004]
gi|262365729|gb|ACY62286.1| cytidine deaminase [Yersinia pestis D182038]
gi|270335319|gb|EFA46096.1| cytidine deaminase [Yersinia pestis KIM D27]
gi|294353948|gb|ADE64289.1| cytidine deaminase [Yersinia pestis Z176003]
gi|320015617|gb|ADV99188.1| cytidine/deoxycytidine deaminase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342855734|gb|AEL74287.1| cytidine deaminase [Yersinia pestis A1122]
gi|391428361|gb|EIQ90348.1| cytidine deaminase [Yersinia pestis PY-01]
gi|391429819|gb|EIQ91625.1| cytidine deaminase [Yersinia pestis PY-02]
gi|391431183|gb|EIQ92791.1| cytidine deaminase [Yersinia pestis PY-03]
gi|391444092|gb|EIR04350.1| cytidine deaminase [Yersinia pestis PY-04]
gi|391445244|gb|EIR05389.1| cytidine deaminase [Yersinia pestis PY-05]
gi|391448345|gb|EIR08167.1| cytidine deaminase [Yersinia pestis PY-06]
gi|391460710|gb|EIR19386.1| cytidine deaminase [Yersinia pestis PY-07]
gi|391461794|gb|EIR20375.1| cytidine deaminase [Yersinia pestis PY-08]
gi|391463876|gb|EIR22227.1| cytidine deaminase [Yersinia pestis PY-09]
gi|391477104|gb|EIR34167.1| cytidine deaminase [Yersinia pestis PY-10]
gi|391478620|gb|EIR35520.1| cytidine deaminase [Yersinia pestis PY-12]
gi|391478636|gb|EIR35535.1| cytidine deaminase [Yersinia pestis PY-11]
gi|391492623|gb|EIR48062.1| cytidine deaminase [Yersinia pestis PY-13]
gi|391493645|gb|EIR48972.1| cytidine deaminase [Yersinia pestis PY-15]
gi|391495866|gb|EIR50889.1| cytidine deaminase [Yersinia pestis PY-14]
gi|391508704|gb|EIR62417.1| cytidine deaminase [Yersinia pestis PY-16]
gi|391508724|gb|EIR62435.1| cytidine deaminase [Yersinia pestis PY-19]
gi|391513517|gb|EIR66724.1| cytidine deaminase [Yersinia pestis PY-25]
gi|391524108|gb|EIR76371.1| cytidine deaminase [Yersinia pestis PY-29]
gi|391526623|gb|EIR78632.1| cytidine deaminase [Yersinia pestis PY-34]
gi|391527539|gb|EIR79447.1| cytidine deaminase [Yersinia pestis PY-32]
gi|391540010|gb|EIR90686.1| cytidine deaminase [Yersinia pestis PY-36]
gi|391542313|gb|EIR92784.1| cytidine deaminase [Yersinia pestis PY-42]
gi|391543666|gb|EIR93978.1| cytidine deaminase [Yersinia pestis PY-45]
gi|391557537|gb|EIS06525.1| cytidine deaminase [Yersinia pestis PY-46]
gi|391557909|gb|EIS06847.1| cytidine deaminase [Yersinia pestis PY-47]
gi|391559313|gb|EIS08102.1| cytidine deaminase [Yersinia pestis PY-48]
gi|391572757|gb|EIS19945.1| cytidine deaminase [Yersinia pestis PY-52]
gi|391573257|gb|EIS20346.1| cytidine deaminase [Yersinia pestis PY-53]
gi|391583682|gb|EIS29313.1| cytidine deaminase [Yersinia pestis PY-54]
gi|391585147|gb|EIS30583.1| cytidine deaminase [Yersinia pestis PY-55]
gi|391588421|gb|EIS33455.1| cytidine deaminase [Yersinia pestis PY-56]
gi|391601643|gb|EIS45048.1| cytidine deaminase [Yersinia pestis PY-58]
gi|391601940|gb|EIS45300.1| cytidine deaminase [Yersinia pestis PY-60]
gi|391603759|gb|EIS46909.1| cytidine deaminase [Yersinia pestis PY-59]
gi|391616362|gb|EIS58025.1| cytidine deaminase [Yersinia pestis PY-61]
gi|391617129|gb|EIS58710.1| cytidine deaminase [Yersinia pestis PY-63]
gi|391623256|gb|EIS64079.1| cytidine deaminase [Yersinia pestis PY-64]
gi|391628280|gb|EIS68378.1| cytidine deaminase [Yersinia pestis PY-65]
gi|391639561|gb|EIS78226.1| cytidine deaminase [Yersinia pestis PY-71]
gi|391640304|gb|EIS78873.1| cytidine deaminase [Yersinia pestis PY-66]
gi|391645223|gb|EIS83123.1| cytidine deaminase [Yersinia pestis PY-72]
gi|391651615|gb|EIS88769.1| cytidine deaminase [Yersinia pestis PY-76]
gi|391656881|gb|EIS93453.1| cytidine deaminase [Yersinia pestis PY-88]
gi|391661660|gb|EIS97682.1| cytidine deaminase [Yersinia pestis PY-89]
gi|391664722|gb|EIT00403.1| cytidine deaminase [Yersinia pestis PY-90]
gi|391671441|gb|EIT06385.1| cytidine deaminase [Yersinia pestis PY-91]
gi|391682539|gb|EIT16407.1| cytidine deaminase [Yersinia pestis PY-93]
gi|391684084|gb|EIT17804.1| cytidine deaminase [Yersinia pestis PY-92]
gi|391684740|gb|EIT18366.1| cytidine deaminase [Yersinia pestis PY-94]
gi|391696442|gb|EIT28930.1| cytidine deaminase [Yersinia pestis PY-95]
gi|391699789|gb|EIT31944.1| cytidine deaminase [Yersinia pestis PY-96]
gi|391701216|gb|EIT33241.1| cytidine deaminase [Yersinia pestis PY-98]
gi|391710004|gb|EIT41120.1| cytidine deaminase [Yersinia pestis PY-99]
gi|391717275|gb|EIT47657.1| cytidine deaminase [Yersinia pestis PY-100]
gi|391717765|gb|EIT48084.1| cytidine deaminase [Yersinia pestis PY-101]
gi|391728479|gb|EIT57587.1| cytidine deaminase [Yersinia pestis PY-102]
gi|391734892|gb|EIT63112.1| cytidine deaminase [Yersinia pestis PY-103]
gi|391735906|gb|EIT63996.1| cytidine deaminase [Yersinia pestis PY-113]
gi|411177182|gb|EKS47197.1| cytidine deaminase [Yersinia pestis INS]
Length = 294
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>gi|238757212|ref|ZP_04618399.1| Cytidine deaminase [Yersinia aldovae ATCC 35236]
gi|238704590|gb|EEP97120.1| Cytidine deaminase [Yersinia aldovae ATCC 35236]
Length = 294
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 145/277 (52%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL +L L+ A A P+S F+VGA+ G SG ++ G N+E
Sbjct: 32 MLTAEQVKTVKSNSGLDDDELAFALLPLAAACALTPVSDFNVGAIARGISGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S ++I +
Sbjct: 92 FSGTPLQQTIHAEQCAVTHAWLRNEASLVSITVNYTPCGHCRQFMNELNSGSGLHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G +I ET + L
Sbjct: 152 -----RPASTLEQYLPDSFGPKDL--DITTLLMDPVDHGY-------KIAET----DELT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AN SHAPYS SGVA+ +G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALAGANHSHAPYSNAHSGVALETADGAIYTGRYAENAAFNPSLPPLQAALI---MANM 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
S R V LVE ++ Q A R L +
Sbjct: 251 SDKNCNSIHRAV---LVEGNKPILTQWDATRATLAAL 284
>gi|242239872|ref|YP_002988053.1| cytidine deaminase [Dickeya dadantii Ech703]
gi|242131929|gb|ACS86231.1| cytidine deaminase [Dickeya dadantii Ech703]
Length = 294
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 154/277 (55%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ AAE + + +TV L L+ A A PIS F VGAV LG SG ++ G N+E
Sbjct: 32 MLTAAEVNHLCGQCRITVDALAFALLPLAAACALTPISAFKVGAVALGDSGALYWGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G PL Q++HAEQ + + L E L+ + V+ PCGHCRQF+ EL + S +NIC+
Sbjct: 92 FSGAPLQQTVHAEQSAVAHAWLRNETALRSVTVNYTPCGHCRQFMNELNSASTLNICLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L H LPD FGP DL LL++ GM+ +PE++ L
Sbjct: 152 -----RSPARLGHYLPDAFGPRDL--NISTLLMDNVDRGMT-------LPESDA----LT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN+SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+Q+AL +G
Sbjct: 194 AAALDAANRSHAPYSQAFSGVALQGERG-IYTGRYAENAAFNPSLPPLQSALNLMNLSGE 252
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
S ++ I A LVE A + Q A + LL ++
Sbjct: 253 S------HDAIQRAVLVEPRRAAISQWSATQSLLAML 283
>gi|54308878|ref|YP_129898.1| cytidine deaminase [Photobacterium profundum SS9]
gi|81615240|sp|Q6LRI0.1|CDD_PHOPR RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|46913308|emb|CAG20096.1| putative cytidine deaminase [Photobacterium profundum SS9]
Length = 295
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 143/274 (52%), Gaps = 28/274 (10%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
++ + +T +L L+ A + PISKF VGA+ G SGR++ G N+EF G L Q
Sbjct: 40 TLLSTTHMTDSELRVALLPIAAAYSVAPISKFFVGAIVRGESGRLYFGANMEFVGASLSQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
+IHAEQ I++ + E + + ++ +PCGHCRQF+ EL + + + ER+
Sbjct: 100 TIHAEQSAISHAWIKGETGITDITINYSPCGHCRQFMNELTTAKTLIVQLP-----EREE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL--EA 192
L LP+ FGP DL D LL +GM+ KE ++ A+ +A
Sbjct: 155 QTLQQYLPESFGPADLNITDA--LLGKIDHGMTI-------------KETDEFVAIACKA 199
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGG 252
AN SHAPY+K SGVA+ +G ++ G Y E+AA+NPSL P+Q ALV G
Sbjct: 200 ANGSHAPYTKNYSGVALKATDGKVFTGKYAENAAFNPSLPPLQVALV------NMNMAGY 253
Query: 253 GYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
I AALVEK D+ + + L+ ++P
Sbjct: 254 ALTEIAEAALVEKADSTISHLSDTQTTLEALNPD 287
>gi|255073085|ref|XP_002500217.1| predicted protein [Micromonas sp. RCC299]
gi|226515479|gb|ACO61475.1| predicted protein [Micromonas sp. RCC299]
Length = 354
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 163/292 (55%), Gaps = 14/292 (4%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
FVI A ++A + GL LLP V+ AQ LA PP SKFHVGA LG+SG ++LG NV
Sbjct: 66 FVISAERVLALAAQRGLDPQDLLPEFVREAQKLAIPPTSKFHVGAAALGASGAVYLGVNV 125
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
E PGLPL+ SIHAEQF + + E L+ +A +AA R + D T
Sbjct: 126 ELPGLPLNASIHAEQFAVVTAMRAGERALEAIATTAA---AMRVIIP------DPGDGAT 176
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLL-DKDVPLLLETHQNGMSFNLCNGQIPE-TENPKE 183
+ S PL LLP FGP DL D+ +PL+LE NG+ F G PE T+
Sbjct: 177 NARSKRHLVLPLCDLLPHSFGPLDLTHDESLPLMLEERHNGLRF--IPGLTPEATDELDA 234
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
AL AN ++APYS P+G+A++D +G I+ G +ESAAYNP++ P+ AALVA +
Sbjct: 235 AAAALALAEANAAYAPYSASPAGLALVDDDGVIHAGRSVESAAYNPTMSPLHAALVAAVG 294
Query: 244 AGGSGGGGGG-YERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294
G G GG + RI +A LVE A V+ L+L+ I+P+ NV C
Sbjct: 295 GAGMGDANGGEWGRIESATLVEMSGAPVQYAGTVALILKTIAPRARLNVIAC 346
>gi|229841492|ref|ZP_04461651.1| cytidine/deoxycytidine deaminase [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229697858|gb|EEO87905.1| cytidine/deoxycytidine deaminase [Yersinia pestis biovar Orientalis
str. PEXU2]
Length = 294
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 146/269 (54%), Gaps = 30/269 (11%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHL---LPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
HP S L LPD FGP DL LL++ +G + + ET +
Sbjct: 152 --------HPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----D 190
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
L AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+
Sbjct: 191 PLTQAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---L 247
Query: 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
A +G R A LVE +AV Q
Sbjct: 248 ANITGENCASIRR---AVLVEGHNAVTSQ 273
>gi|290508564|ref|ZP_06547935.1| cytidine deaminase [Klebsiella sp. 1_1_55]
gi|289777958|gb|EFD85955.1| cytidine deaminase [Klebsiella sp. 1_1_55]
Length = 294
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 150/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ Q +GL L L+ A AR +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDAQDHGFPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANCCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>gi|238785454|ref|ZP_04629439.1| Cytidine deaminase [Yersinia bercovieri ATCC 43970]
gi|238713659|gb|EEQ05686.1| Cytidine deaminase [Yersinia bercovieri ATCC 43970]
Length = 294
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 128/242 (52%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ G SG ++ G N+EF G PL Q+IHAEQ +T+ L E L + V+
Sbjct: 67 PISHFMVGAIARGKSGNLYFGANMEFSGAPLQQTIHAEQCAVTHAWLRGETGLVSITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + +D++I + R L LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTDLHIHLPG-----RPASTLGQYLPDAFGPKDL--AITTLLMDP 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G S + L AAL AN SHAPYS SGVA+ +G IY G Y
Sbjct: 180 VDHGYSV-----------AATDPLTQAALHGANHSHAPYSLSHSGVAVELADGTIYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ A SG R V LVE +A++ Q A L
Sbjct: 229 AENAAFNPSLPPLQAALI---LANLSGKDCAAIRRAV---LVEGNNAILSQWDATHATLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|114562813|ref|YP_750326.1| cytidine deaminase [Shewanella frigidimarina NCIMB 400]
gi|122300042|sp|Q083S7.1|CDD_SHEFN RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|114334106|gb|ABI71488.1| cytidine deaminase [Shewanella frigidimarina NCIMB 400]
Length = 298
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 24/278 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A++ + + SG T Q+L L+ A LA PPIS+F+VGA+ GSSG +++G N+E
Sbjct: 32 IDASQFAGLVKASGKTEQQVLMDLLPIAAALANPPISEFYVGAIAKGSSGDLYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E + + V+ +PCGHCRQF+ EL N S INI + +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGETEIVDIIVNFSPCGHCRQFMNELVNGSKINIHLPN- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
++ L+H LP FGP+D LD VPLL + Q FN C+ P +
Sbjct: 151 ----QETQTLAHYLPYAFGPSD-LDVTVPLLCKREQ---EFN-CDSDDP--------MII 193
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A++ S+APY+ + V + +G + G Y ESAA+NPS+ P+Q AL +
Sbjct: 194 EAIDQMGLSYAPYTNNNAAVVLETNDGATFCGRYAESAAFNPSMQPMQMALSNLIR---- 249
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285
Y I A LVE + AA L I+P
Sbjct: 250 --NNRQYSEIKRAVLVESSVGKITLVGAAMDALHAIAP 285
>gi|330446036|ref|ZP_08309688.1| cytidine deaminase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490227|dbj|GAA04185.1| cytidine deaminase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 295
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 145/266 (54%), Gaps = 28/266 (10%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L LLP A A PIS F+VGA+ G+SGR++ G N+EF G + +IHAEQ I+
Sbjct: 54 LALLPV----AAAYAVVPISNFYVGAIVRGTSGRLYFGANMEFAGASMACTIHAEQSAIS 109
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + E ++ + ++ +PCGHCRQF+ EL ++ I + ER+ L LP+
Sbjct: 110 HAWIKGETGIKDVTINYSPCGHCRQFMNELNTAKELVIQLP-----ERQPMTLQQYLPES 164
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP DL +D LL NG++ I E + L AA +AAN+SHAPYSK
Sbjct: 165 FGPADLGIEDA--LLSDIDNGIT-------IAE----QSELAVAACDAANRSHAPYSKNF 211
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVE 264
SGVA+ +G ++ G Y E+AA+NPSL P+Q AL+ G +V AALVE
Sbjct: 212 SGVALKAKDGRVFVGMYAENAAFNPSLPPLQVALI------NMNMSGYKLSELVEAALVE 265
Query: 265 KEDAVVRQEHAARLLLQVISPKCEFN 290
++ + Q + LL+ ++P +
Sbjct: 266 SAESQISQLARTQALLEALNPDIQMT 291
>gi|51595864|ref|YP_070055.1| cytidine deaminase [Yersinia pseudotuberculosis IP 32953]
gi|186894951|ref|YP_001872063.1| cytidine deaminase [Yersinia pseudotuberculosis PB1/+]
gi|81639819|sp|Q66C79.1|CDD_YERPS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701695|sp|B2JZJ6.1|CDD_YERPB RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|51589146|emb|CAH20766.1| cytidine deaminase [Yersinia pseudotuberculosis IP 32953]
gi|186697977|gb|ACC88606.1| cytidine deaminase [Yersinia pseudotuberculosis PB1/+]
Length = 294
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 143/266 (53%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNCGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>gi|365108348|ref|ZP_09336249.1| cytidine deaminase [Citrobacter freundii 4_7_47CFAA]
gi|363640704|gb|EHL80154.1| cytidine deaminase [Citrobacter freundii 4_7_47CFAA]
Length = 294
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A AR P+S F+VGA+ G SG + GGN+E
Sbjct: 32 MLTAEQVSLLKRESGLDEDALAFALLPLAAACARTPLSNFNVGAISRGISGNWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHVLRDYLPDAFGPKDLEIK--TLLMDDQDHGFALQ------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+ H PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 QAAITAANRCHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALNLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 248 -NLNGYDYPDIQRAVLAEKADAPLIQWDATSATLKAL 283
>gi|395230579|ref|ZP_10408883.1| cytidine deaminase [Citrobacter sp. A1]
gi|421846553|ref|ZP_16279700.1| cytidine deaminase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424731360|ref|ZP_18159944.1| cytidine deaminase [Citrobacter sp. L17]
gi|394715964|gb|EJF21749.1| cytidine deaminase [Citrobacter sp. A1]
gi|411772147|gb|EKS55785.1| cytidine deaminase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422894011|gb|EKU33826.1| cytidine deaminase [Citrobacter sp. L17]
gi|455644547|gb|EMF23647.1| cytidine deaminase [Citrobacter freundii GTC 09479]
Length = 294
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A AR P+S F+VGA+ G SG + GGN+E
Sbjct: 32 MLTAEQVSLLKRESGLDEDALAFALLPLAAACARTPLSNFNVGAISRGISGNWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHVLRDYLPDAFGPKDLEIK--TLLMDDQDHGFALQ------------GDALT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+ H PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 QAAITAANRCHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALNLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 248 -NLNGYDYPDIQRAVLAEKADAPLIQWDATSATLKAL 283
>gi|383814748|ref|ZP_09970167.1| cytidine deaminase [Serratia sp. M24T3]
gi|383296525|gb|EIC84840.1| cytidine deaminase [Serratia sp. M24T3]
Length = 294
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 131/242 (54%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF+VGAV G SG ++ G N+EF G + Q++HAEQ +T+ + E RL+ + V+
Sbjct: 67 PISKFYVGAVARGVSGNLYFGANMEFRGASMQQTVHAEQSAVTHAWMRGEKRLESITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + +++ I + +R L LP FGP DL + LL++
Sbjct: 127 TPCGHCRQFMNELNSGTELEIHLP-----DRAVASLGEYLPYSFGPRDLAIET--LLMDD 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + L N L AL A N+SHAPYS+ SG+A+ G ++ G Y
Sbjct: 180 VDHG--YQLANA---------APLVQQALTACNQSHAPYSQSHSGIALESFSGQVFTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ G RI A LVE D +V Q A R L
Sbjct: 229 AENAAFNPSLPPLQAALIVL------NLSGEDCTRIKQAVLVESHDPLVSQHDATRATLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|428182090|gb|EKX50952.1| hypothetical protein GUITHDRAFT_161756 [Guillardia theta CCMP2712]
Length = 243
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 125/217 (57%), Gaps = 12/217 (5%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L++ A+ ++P IS F VGAV +G SG +LGGNVEF L IHAE+F ITN I
Sbjct: 15 LYRLLEEAKGFSKPEISGFRVGAVAVGESGTSYLGGNVEFRHQGLEHVIHAEEFAITNAI 74
Query: 88 LNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ E + HLAVS APCG+CRQ + EL S ++I I S +K + LLP F P
Sbjct: 75 NHGERSISHLAVSMAPCGYCRQIISELAEASQLSIWI----SPSKKPTDIDALLPSAFSP 130
Query: 148 NDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGV 207
DL + L + H+ + P L ALE AN+S+APY++ PSGV
Sbjct: 131 KDLGGRGRLLSEQAHELELVEVPEEAWRP--------LADVALERANRSYAPYTRSPSGV 182
Query: 208 AIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
A+M G I G Y E+ A+NPS+ P++AA+VA L++
Sbjct: 183 ALMLSCGKIVGGGYAENCAFNPSISPLKAAIVAVLSS 219
>gi|198242046|ref|YP_002216267.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|375119751|ref|ZP_09764918.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|445146622|ref|ZP_21387836.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445154467|ref|ZP_21391794.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|226701685|sp|B5FMZ9.1|CDD_SALDC RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|197936562|gb|ACH73895.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|326624018|gb|EGE30363.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|444845519|gb|ELX70729.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444850712|gb|ELX75809.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
Length = 294
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A T AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAATCARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|238480988|ref|NP_001154274.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|332660248|gb|AEE85648.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 445
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 161/311 (51%), Gaps = 48/311 (15%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
AA + A+ SG + L L+ A LA+ S+ + AVG GSSGR FLG NVE PG
Sbjct: 9 AALTPTEAESSGPFEPETLLPLINRALPLAQALPSQSPLVAVGRGSSGRTFLGVNVELPG 68
Query: 70 L-PLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINI 122
L PLH SIHA QFL+ +L LN E L LA S+ PC HC Q LQE+RN S +
Sbjct: 69 LSPLH-SIHAGQFLVVHLALNNERTLNCLAFSSNGSYFDPPCPHCCQLLQEIRNASSTKL 127
Query: 123 CITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP------LLLETHQNGMSF-------- 168
IT + + ++ LS LP ++ L +VP LL E NG++
Sbjct: 128 LIT--DPSRQRDMSLSTYLPQKYLS---LYNEVPKYFFARLLDENRNNGLTLINPNPIRD 182
Query: 169 ----NLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMES 224
+CN L AL+AAN+S+APYSK PSGVA+MD +G +Y G +ES
Sbjct: 183 CLDSEICN-----------HLSCRALKAANRSYAPYSKSPSGVALMDFQGRVYSGWSIES 231
Query: 225 AAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL-QVI 283
A NP LG QAALV ++ + GGG + IV LVEK DA + AR +L +V
Sbjct: 232 VA-NPILGAAQAALVDFM----TNGGGHEFNNIVRGFLVEKRDAKLSHLATAREILNKVA 286
Query: 284 SPKCEFNVFHC 294
V HC
Sbjct: 287 HFSFILRVLHC 297
>gi|237732196|ref|ZP_04562677.1| cytidine deaminase [Citrobacter sp. 30_2]
gi|226907735|gb|EEH93653.1| cytidine deaminase [Citrobacter sp. 30_2]
Length = 294
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A AR P+S F+VGA+ G SG + GGN+E
Sbjct: 32 MLTAEQVSLLKRESGLDEDALAFALLPLAAACARTPLSNFNVGAISRGISGNWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHMLRDYLPDAFGPKDLEIK--TLLMDDQDHGFALQ------------GDALT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+ H PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 QAAITAANRCHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALNLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 248 -NLNGYDYPDIQRAVLAEKADAPLIQWDATSATLKAL 283
>gi|254228383|ref|ZP_04921810.1| cytidine deaminase [Vibrio sp. Ex25]
gi|262394470|ref|YP_003286324.1| cytidine deaminase [Vibrio sp. Ex25]
gi|451977566|ref|ZP_21927645.1| cytidine deaminase [Vibrio alginolyticus E0666]
gi|151939189|gb|EDN58020.1| cytidine deaminase [Vibrio sp. Ex25]
gi|262338064|gb|ACY51859.1| cytidine deaminase [Vibrio sp. Ex25]
gi|451929597|gb|EMD77335.1| cytidine deaminase [Vibrio alginolyticus E0666]
Length = 295
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 152/274 (55%), Gaps = 24/274 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
E + +GL+ +L L+ A + P+S+F+VGA+ G SGR++ G N+EF G+ L
Sbjct: 39 EQLLSATGLSDKELRVALLPFAAAYSYAPLSEFYVGAIVRGLSGRLYFGANMEFFGVQLG 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL +++ I + ER+
Sbjct: 99 QTVHAEQSAISHAWMKGERGIKDITINFSPCGHCRQFMNELSTANELKIQLP-----ERE 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGPNDL + + HQ C+ + + L +A+EA
Sbjct: 154 EKSLHEYLPEAFGPNDLGIESGLMAEVKHQFS-----CDDE--------DTLIQSAVEAM 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGG 253
N SH+PY+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+ L AG +
Sbjct: 201 NMSHSPYTNNLSGLALEMASGRVFQGAYAENAAFNPSLPPLQVALIQVLLAGET------ 254
Query: 254 YERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
++ I AAALVE + + + L+ ++P
Sbjct: 255 FDNIKAAALVENSEGKISHLADTQSTLEALNPDI 288
>gi|440230175|ref|YP_007343968.1| cytidine deaminase [Serratia marcescens FGI94]
gi|440051880|gb|AGB81783.1| cytidine deaminase [Serratia marcescens FGI94]
Length = 294
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 147/277 (53%), Gaps = 24/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E++ Q+ GL L L+ A + PIS+F+VGA+ SG ++ G N+E
Sbjct: 32 MFSAEQVEAIKQRCGLDDDALAFALLPLAAACSLTPISQFNVGAIARSVSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G P+ Q++HAEQ ++T+ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FSGAPMQQTVHAEQCVVTHAWLRGEAALAAVTVNYTPCGHCRQFMNELNSAGDLRIQLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L H LPD FGP DL LL++ +G + L
Sbjct: 152 -----RPAATLGHYLPDAFGPRDLAIHT--LLMDPADHG-----------HRLALDDALA 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN+SHAPYS+ SGVA+ +G IY G Y E+AA+NPSL P+QAAL+
Sbjct: 194 IAALDAANRSHAPYSQAHSGVALETSDGKIYAGRYAENAAFNPSLPPLQAALILL----- 248
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
GG I A L E + AV+ Q A R LL +
Sbjct: 249 -NMSGGDCRHIRRAVLAEPQSAVLSQHDATRALLAAL 284
>gi|422910021|ref|ZP_16944663.1| cytidine deaminase [Vibrio cholerae HE-09]
gi|341633933|gb|EGS58709.1| cytidine deaminase [Vibrio cholerae HE-09]
Length = 295
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 144/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGTQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRTAKTLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +GQ T + E L AL A N SH+
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPVNHGQ---TSDDDEELIQQALRAMNISHS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G S +E I
Sbjct: 206 PYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGES------FEDIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVESATGKISHLADTQATLEVINPDI 288
>gi|420257871|ref|ZP_14760620.1| cytidine deaminase [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|404514687|gb|EKA28473.1| cytidine deaminase [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 294
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F VGA+ G SG ++ G N+EF G PL Q+IHAEQ +T+ L E L + V+
Sbjct: 67 PVSNFKVGAIARGISGNLYFGANMEFSGAPLQQTIHAEQCAVTHAWLRNEASLVSITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + ++I + + R L LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTGLHIHLPN-----RPASTLGQYLPDSFGPKDL--NITTLLMDP 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G +I ET + L AAL+ AN SHAPYS SGVA+ +G IY G Y
Sbjct: 180 VDHGY-------KITET----DVLTQAALDGANHSHAPYSNSHSGVALEAADGTIYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ A S R A LVE V+ Q +A + L
Sbjct: 229 AENAAFNPSLPPLQAALI---MANMSDKNCNSIRR---AVLVEGNKPVLTQWNATQATLA 282
Query: 282 VI 283
+
Sbjct: 283 TL 284
>gi|15233623|ref|NP_194687.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
gi|4836444|gb|AAD30442.1|AF121877_2 DesB [Arabidopsis thaliana]
gi|5123552|emb|CAB45318.1| cytidine deaminase-like protein [Arabidopsis thaliana]
gi|7269857|emb|CAB79716.1| cytidine deaminase-like protein [Arabidopsis thaliana]
gi|332660247|gb|AEE85647.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 298
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 163/301 (54%), Gaps = 28/301 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
AA + A+ SG + L L+ A LA+ S+ + AVG GSSGR FLG NVE PG
Sbjct: 9 AALTPTEAESSGPFEPETLLPLINRALPLAQALPSQSPLVAVGRGSSGRTFLGVNVELPG 68
Query: 70 L-PLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINI 122
L PLH SIHA QFL+ +L LN E L LA S+ PC HC Q LQE+RN S +
Sbjct: 69 LSPLH-SIHAGQFLVVHLALNNERTLNCLAFSSNGSYFDPPCPHCCQLLQEIRNASSTKL 127
Query: 123 CITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP------LLLETHQNGMSFNLCNGQIP 176
IT + + ++ LS LP ++ L +VP LL E NG++ + I
Sbjct: 128 LIT--DPSRQRDMSLSTYLPQKYLS---LYNEVPKYFFARLLDENRNNGLTL-INPNPIR 181
Query: 177 ETENPK--ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+ + + L AL+AAN+S+APYSK PSGVA+MD +G +Y G +ES A NP LG
Sbjct: 182 DCLDSEICNHLSCRALKAANRSYAPYSKSPSGVALMDFQGRVYSGWSIESVA-NPILGAA 240
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL-QVISPKCEFNVFH 293
QAALV ++ + GGG + IV LVEK DA + AR +L +V V H
Sbjct: 241 QAALVDFM----TNGGGHEFNNIVRGFLVEKRDAKLSHLATAREILNKVAHFSFILRVLH 296
Query: 294 C 294
C
Sbjct: 297 C 297
>gi|317048841|ref|YP_004116489.1| cytidine deaminase [Pantoea sp. At-9b]
gi|316950458|gb|ADU69933.1| cytidine deaminase [Pantoea sp. At-9b]
Length = 299
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 140/277 (50%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
V++ E + Q +GL L L+ A + A P+S F+VGA+ G SG + G N+E
Sbjct: 32 VVQPHEVTQIQQTTGLDADALALALLPLAASCAIAPVSNFNVGAIARGISGTWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F PL Q++HAEQ IT+ L E RL+ + V+ PCGHCRQF+ EL + + I I +
Sbjct: 92 FRDAPLQQTVHAEQSAITHAWLRGETRLETITVNYTPCGHCRQFMNELNSGTAIRISLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL +G + L+
Sbjct: 152 -----RAISTLGDYLPDAFGPADL--NIAERLLSPVNHGFVLQ------------GDSLQ 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+EAAN SHAPYS+ SGVA+ G I+ G Y E+AA+NPSL P+QAAL+
Sbjct: 193 QAAIEAANHSHAPYSRSYSGVALRSRSGQIFTGRYAENAAFNPSLPPLQAALILM----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
E + A L E + A + Q+ A R L +
Sbjct: 248 -NMHNEALESVQQAVLAECQAATLSQQDATRATLAAL 283
>gi|5080715|gb|AAD39264.1| cytidine deaminase 9 [Arabidopsis thaliana]
Length = 298
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 163/301 (54%), Gaps = 28/301 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
AA + A+ SG + L L+ A LA+ S+ + AVG GSSGR FLG NVE PG
Sbjct: 9 AALTPTEAESSGPFEPETLLPLINRALPLAQALPSQSPLVAVGRGSSGRTFLGVNVELPG 68
Query: 70 L-PLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINI 122
L PLH SIHA QFL+ +L LN E L LA S+ PC HC Q LQE+RN S +
Sbjct: 69 LSPLH-SIHAGQFLVVHLALNNERTLNCLAFSSNGSYFDPPCPHCCQLLQEIRNASSTKL 127
Query: 123 CITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP------LLLETHQNGMSFNLCNGQIP 176
IT + + ++ LS LP ++ L +VP LL E NG++ + I
Sbjct: 128 LIT--DPSRQRDMSLSTYLPQKYFS---LYNEVPKYFFARLLDENRNNGLTL-INPNPIR 181
Query: 177 ETENPK--ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+ + + L AL+AAN+S+APYSK PSGVA+MD +G +Y G +ES A NP LG
Sbjct: 182 DCLDSEICNHLGCRALKAANRSYAPYSKSPSGVALMDFQGRVYSGWSIESVA-NPILGAA 240
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP-KCEFNVFH 293
QAALV ++ + GGG + IV LVEK DA + AR +L I+ V H
Sbjct: 241 QAALVDFM----TNGGGHEFNNIVRGFLVEKRDAKLSHLATAREILNKIAHFSFILRVLH 296
Query: 294 C 294
C
Sbjct: 297 C 297
>gi|261211046|ref|ZP_05925336.1| cytidine deaminase [Vibrio sp. RC341]
gi|260840021|gb|EEX66621.1| cytidine deaminase [Vibrio sp. RC341]
Length = 295
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G +GR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLDDADLRVALLPLAAAYSFAPISEFYVGAIVRGLTGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T N E L
Sbjct: 151 ----KRAAKSLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TTNDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY GSY E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGSYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEEIEAAALVESTTGKISHLADTQATLEVINPDI 288
>gi|339999946|ref|YP_004730829.1| cytidine deaminase [Salmonella bongori NCTC 12419]
gi|339513307|emb|CCC31057.1| cytidine deaminase [Salmonella bongori NCTC 12419]
Length = 294
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGAV G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAVARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKELAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS+ PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFALT------------GDTLTQAAITAANKSHMPYSQSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYVDIQRAILAEKGDATLIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|419958188|ref|ZP_14474253.1| cytidine deaminase [Enterobacter cloacae subsp. cloacae GS1]
gi|388606871|gb|EIM36076.1| cytidine deaminase [Enterobacter cloacae subsp. cloacae GS1]
Length = 294
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 146/277 (52%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ Q +GL L L+ A AR +S F+VGA+ G SG + GGN+E
Sbjct: 32 LLTADQVTTLKQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGTWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL + ++
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKALRAITVNYTPCGHCRQFMNELNSGLELR----- 146
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
IN R H L LPD FGP DL K LL++ +G + + + L
Sbjct: 147 INLPGRAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGYALS------------GDELS 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 EAAIAAANKSHTPYSKSPSGVALQCRDGRIFTGSYAENAAFNPTLPPLQGALNLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 248 -SLNGYDYPDIQRAILAEKADAPLIQWDATAATLKAL 283
>gi|253687885|ref|YP_003017075.1| cytidine deaminase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|259585869|sp|C6DDS7.1|CDD_PECCP RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|251754463|gb|ACT12539.1| cytidine deaminase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 296
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 131/240 (54%), Gaps = 26/240 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ G SG + G N+EF + L Q++HAEQ +++ + E L+ + V+
Sbjct: 67 PISNFQVGAIAQGLSGNFYFGANMEFSAVQLQQTVHAEQSAVSHAWMRNERGLRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLE 160
PCGHCRQF+ ELR+ + + I + R+ LSH LPD FGP DL +D LL++
Sbjct: 127 TPCGHCRQFMNELRDAASLRIQLPG-----RQPATLSHYLPDSFGPVDLQIDT---LLMD 178
Query: 161 THQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGS 220
+G + N L AL+AAN+SHAPYSK SG+ + GN Y G
Sbjct: 179 DINHGATLQNMNA-----------LARQALDAANRSHAPYSKAISGIVLETSSGNTYTGR 227
Query: 221 YMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
Y E+AA+NPSL P+Q AL AG + A +VE+ +AVV ++++L
Sbjct: 228 YAENAAFNPSLPPLQTALNLMNLAGED------LSTVKHAVVVERRNAVVSHWAISQIML 281
>gi|91223951|ref|ZP_01259215.1| cytidine deaminase [Vibrio alginolyticus 12G01]
gi|91191443|gb|EAS77708.1| cytidine deaminase [Vibrio alginolyticus 12G01]
Length = 295
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 151/274 (55%), Gaps = 24/274 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
E + +GL+ +L L+ A + P+S F+VGA+ G SGR++ G N+EF G+ L
Sbjct: 39 EQLLSATGLSDKELRVALLPFAAAYSYAPLSDFYVGAIVRGLSGRLYFGANMEFFGVQLG 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL +++ I + ER+
Sbjct: 99 QTVHAEQSAISHAWMKGERGVKDITINFSPCGHCRQFMNELSTANELKIQLP-----ERE 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGPNDL + + HQ C+ + + L +A+EA
Sbjct: 154 EKSLHEYLPEAFGPNDLGIESGLMAEVKHQFS-----CDDE--------DALIQSAVEAM 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGG 253
N SH+PY+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+ L AG +
Sbjct: 201 NMSHSPYTNNLSGLALEMTSGRVFQGAYAENAAFNPSLPPLQVALIQVLLAGET------ 254
Query: 254 YERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
++ I AAALVE + + + L+ ++P
Sbjct: 255 FDSIKAAALVENSEGKISHLADTQSTLEALNPDI 288
>gi|90415073|ref|ZP_01223031.1| cytidine deaminase [Photobacterium profundum 3TCK]
gi|90323808|gb|EAS40421.1| cytidine deaminase [Photobacterium profundum 3TCK]
Length = 295
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 143/275 (52%), Gaps = 28/275 (10%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
++ + +T +L L+ A + PIS F VGA+ G SGR++ G N+EF G L Q
Sbjct: 40 TLLSTTHMTDSELRVALLPIAAAYSVAPISNFFVGAIVRGESGRLYFGANMEFVGASLSQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
+IHAEQ I++ + E + + ++ +PCGHCRQF+ EL + + + ER+
Sbjct: 100 TIHAEQSAISHAWIKGETGITDITINYSPCGHCRQFMNELTTAKTLIVQLP-----EREE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL--EA 192
L LP+ FGP DL D LL T +G++ KE ++ A+ +A
Sbjct: 155 QTLQQYLPESFGPADLNITDA--LLGTIDHGITI-------------KETDEFVAIACKA 199
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGG 252
AN SHAPY+K SGVA+ +G ++ G Y E+AA+NPSL P+Q ALV G
Sbjct: 200 ANGSHAPYTKNYSGVALKATDGKVFIGKYAENAAFNPSLPPLQVALV------NMNMAGY 253
Query: 253 GYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
I AALVEK D+ + + L+ ++P
Sbjct: 254 ALTDIAEAALVEKADSTISHLSDTQTTLEALNPDI 288
>gi|269966313|ref|ZP_06180400.1| cytidine deaminase [Vibrio alginolyticus 40B]
gi|269829052|gb|EEZ83299.1| cytidine deaminase [Vibrio alginolyticus 40B]
Length = 295
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 151/274 (55%), Gaps = 24/274 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
E + +GL+ +L L+ A + P+S F+VGA+ G SGR++ G N+EF G+ L
Sbjct: 39 EQLLSATGLSDKELRVALLPFAAAYSYAPLSDFYVGAIVRGLSGRLYFGANMEFFGVQLG 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL +++ I + ER+
Sbjct: 99 QTVHAEQSAISHAWMKGERGVKDITINFSPCGHCRQFMNELSTANELKIQLP-----ERE 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGPNDL + + HQ C+ + + L +A+EA
Sbjct: 154 EKSLHEYLPEAFGPNDLGIESGLMAEVQHQFS-----CDDE--------DALIQSAVEAM 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGG 253
N SH+PY+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+ L AG +
Sbjct: 201 NMSHSPYTNNLSGLALEMTSGRVFQGAYAENAAFNPSLPPLQVALIQVLLAGET------ 254
Query: 254 YERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
++ I AAALVE + + + L+ ++P
Sbjct: 255 FDSIKAAALVENSEGKISHLADTQSTLEALNPDI 288
>gi|229525832|ref|ZP_04415237.1| cytidine deaminase [Vibrio cholerae bv. albensis VL426]
gi|229339413|gb|EEO04430.1| cytidine deaminase [Vibrio cholerae bv. albensis VL426]
Length = 295
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 147/281 (52%), Gaps = 26/281 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L TL+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVTLLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL C
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTA-----CSLK 146
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
I +R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 147 IQLPKRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPD 287
>gi|329297900|ref|ZP_08255236.1| cytidine deaminase [Plautia stali symbiont]
Length = 298
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 128/242 (52%), Gaps = 25/242 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F+VGA+ G SG + G N+EF PL Q++HAEQ ++T+ L E +L + V+
Sbjct: 67 PVSHFYVGAIARGISGHWYFGANMEFLQAPLQQTVHAEQSVVTHAWLRGEAQLATITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I I + R L+ LPD FGP DL + L
Sbjct: 127 TPCGHCRQFMNELNSGTTIRISLPG-----RAVSTLADYLPDAFGPVDLNISERLLTPVD 181
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H G +P + L+ AA++AA++SHAPYS+ SGVA+ G IY G Y
Sbjct: 182 H----------GFLPR----GDALQQAAIDAASRSHAPYSQSYSGVALQSRSGQIYTGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ E I A L E DA + Q A R L
Sbjct: 228 AENAAFNPSLPPLQAALILM------NMHNEALEEIQQAVLAESADATLSQFDATRTTLA 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|125525159|gb|EAY73273.1| hypothetical protein OsI_01146 [Oryza sativa Indica Group]
Length = 470
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 132/242 (54%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS FHVGA+ G SG ++ G N+EF G PL QS+HAEQ +T+ L E L + V+
Sbjct: 243 PISHFHVGAIARGQSGNLYFGANMEFSGAPLQQSVHAEQSAVTHAWLRGEKALASITVNY 302
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I + R L+ LPD FGP DL DV LL
Sbjct: 303 TPCGHCRQFMNELNSGGALQIRLPG-----RAPATLADYLPDAFGPKDL---DVASLLMD 354
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
N Q+P + L AAL AAN+SHAPYS SGVA+ +G++Y G Y
Sbjct: 355 EVNH------GHQLPL----NDALTLAALAAANRSHAPYSNAHSGVALETADGSLYAGRY 404
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ +GG I A L E +DA + Q A R+ L
Sbjct: 405 AENAAFNPSLPPLQAALILLNLSGGD------CRAIRRAVLAEPQDASISQWDATRVTLA 458
Query: 282 VI 283
+
Sbjct: 459 AL 460
>gi|227112989|ref|ZP_03826645.1| cytidine deaminase [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 296
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 136/241 (56%), Gaps = 28/241 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ G SG + G N+EF + L Q++HAEQ +++ + E L+ + V+
Sbjct: 67 PISNFQVGAIAQGLSGNFYFGANMEFSAVQLQQTVHAEQSAVSHAWMRNERGLRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLE 160
PCGHCRQF+ ELRN + + I + R+ LSH LPD FGP DL +D LL++
Sbjct: 127 TPCGHCRQFMNELRNAASLRIQLPG-----RQPAMLSHYLPDSFGPVDLHIDT---LLMD 178
Query: 161 THQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGS 220
+G + L N + L AL+AAN+SHAPYS SG+A+ GNIY G
Sbjct: 179 DVNHGAT--LHNVGV---------LARLALDAANRSHAPYSNAISGIALETSNGNIYTGR 227
Query: 221 YMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
Y E+AA+NPSL P+Q AL + LA G I A+VE+ DAVV ++++
Sbjct: 228 YAENAAFNPSLPPLQTALNLVNLA-------GEDLCTIKRGAIVERRDAVVSHWAISQIM 280
Query: 280 L 280
L
Sbjct: 281 L 281
>gi|262402422|ref|ZP_06078983.1| cytidine deaminase [Vibrio sp. RC586]
gi|262351204|gb|EEZ00337.1| cytidine deaminase [Vibrio sp. RC586]
Length = 295
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSFAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEQGVADITINFSPCGHCRQFMNELTTASSLRIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T N E L
Sbjct: 151 ----KRAAKSLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TTNDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAVYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEEIEAAALVESTTGKISHLADTQATLEVINPDI 288
>gi|453062900|gb|EMF03888.1| cytidine deaminase [Serratia marcescens VGH107]
Length = 294
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 131/242 (54%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS FHVGA+ G SG ++ G N+EF G PL Q++HAEQ +T+ L EP L + V+
Sbjct: 67 PISHFHVGAIARGQSGNLYFGANMEFSGAPLQQTVHAEQCAVTHAWLRGEPALASVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + ++ I + R L+ LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGGELQIRLPG-----RAPATLADYLPDAFGPKDL--DIASLLMDK 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + L AAL AAN+SHAPYS SGVA+ +GNIY G Y
Sbjct: 180 VDHG-----------HRLALDDALAQAALAAANQSHAPYSNAHSGVALETADGNIYAGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ +GG I A L E + A++ Q A R L
Sbjct: 229 AENAAFNPSLPPLQAALILLNLSGGD------CLNIRRAVLAEPQKAILSQWDATRATLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|375265281|ref|YP_005022724.1| cytidine deaminase [Vibrio sp. EJY3]
gi|369840602|gb|AEX21746.1| cytidine deaminase [Vibrio sp. EJY3]
Length = 295
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 154/281 (54%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TLSAQQFEQLLSATALSDKELRVALLPFAAAYSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL D+ + +
Sbjct: 92 FLGVQLGQTVHAEQSAISHAWMKGERGVKDITINFSPCGHCRQFMNELSTAKDLKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER+ L LP+ FGP DL K + HQ F C+ EN + L
Sbjct: 151 ----EREEKSLHEYLPEAFGPADLGIKSGLMAEVKHQ----FE-CD------EN--DALI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A++A N SHAPY+ SG+A+ +G +++G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QKAVDAMNMSHAPYTNNLSGLALELADGRVFQGAYAENAAFNPSLPPLQVALIQVLLAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ ++ I AAALVE + + + L+ ++P
Sbjct: 254 T------FDNIKAAALVENSEGKISHLADTQSTLEALNPDI 288
>gi|170019540|ref|YP_001724494.1| cytidine deaminase [Escherichia coli ATCC 8739]
gi|189081898|sp|B1IYC6.1|CDD_ECOLC RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|169754468|gb|ACA77167.1| cytidine deaminase [Escherichia coli ATCC 8739]
Length = 294
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL ++ D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSSLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILL------NLKGYDYPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|302835367|ref|XP_002949245.1| cytidine deaminase [Volvox carteri f. nagariensis]
gi|300265547|gb|EFJ49738.1| cytidine deaminase [Volvox carteri f. nagariensis]
Length = 417
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 148/296 (50%), Gaps = 65/296 (21%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
RF+I AAE + SG TV +LL +L+ A LARPPIS + VG+V LG SG +++G N
Sbjct: 54 RFMIPAAEVRQLLNASGNTVEELLFSLITPASKLARPPISGYRVGSVALGGSGSVYVGVN 113
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHC----------------- 107
+EFPG PL+ SIHAEQ L+ N + + E +Q LAVSAAPCGHC
Sbjct: 114 IEFPGAPLNNSIHAEQCLLVNCLHSGETSMQALAVSAAPCGHCSCCCCCCCWAPLRVSEA 173
Query: 108 ----------------RQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151
RQF E+++ + I + + L+ LLP+RFGP+DL
Sbjct: 174 ASSSLDALLMFFASLQRQFYAEIKDADALEY----IFGRDTQPKFLADLLPERFGPSDLQ 229
Query: 152 DKD-------------------------VPLLLETHQNGMSFNL-CNGQIPETENPKE-- 183
+ PLLLE N ++ ++ E +E
Sbjct: 230 SRSQSVPVIVHAGRLQRVLVCWWPQVEPFPLLLERQSNSAVWHQDALAEVAERAGEQEFQ 289
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
R AL A + +APY+KC SG A++ G ++ G Y+ESAAYNPSL P +A+V
Sbjct: 290 RAAALALSEARQCYAPYTKCHSGAAVVTRSGQVFSGGYIESAAYNPSLSPFHSAVV 345
>gi|254291683|ref|ZP_04962470.1| cytidine deaminase [Vibrio cholerae AM-19226]
gi|150422367|gb|EDN14327.1| cytidine deaminase [Vibrio cholerae AM-19226]
Length = 295
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 144/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRAAKTLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +G+ T + E L AL A N SH+
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEELIQQALRAMNISHS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G S +E I
Sbjct: 206 PYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGES------FEDIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVESATGKISHLADTQATLEVINPDI 288
>gi|421256853|ref|ZP_15710684.1| cytidine deaminase, partial [Pasteurella multocida subsp. multocida
str. Anand1_cattle]
gi|401700777|gb|EJS91585.1| cytidine deaminase, partial [Pasteurella multocida subsp. multocida
str. Anand1_cattle]
Length = 267
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 8 PYFTVE-----YLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 62
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 63 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 122
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL D+ LL+ N +++ ET++P
Sbjct: 123 LPHSQNNL-----LHSYLPDAFGPADL---DIQHFLLDAQDNQLAY--------ETQDP- 165
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 166 --VMLTALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLL 223
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 224 L---SGDTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDISLDY 264
>gi|421350999|ref|ZP_15801364.1| cytidine deaminase [Vibrio cholerae HE-25]
gi|395951444|gb|EJH62058.1| cytidine deaminase [Vibrio cholerae HE-25]
Length = 295
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 149/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL + S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTSASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>gi|417820647|ref|ZP_12467261.1| cytidine deaminase [Vibrio cholerae HE39]
gi|340038278|gb|EGQ99252.1| cytidine deaminase [Vibrio cholerae HE39]
Length = 284
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 21 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 80
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 81 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 139
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 140 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 181
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 182 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 241
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 242 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 277
>gi|301024367|ref|ZP_07188056.1| cytidine deaminase [Escherichia coli MS 196-1]
gi|432564396|ref|ZP_19800979.1| cytidine deaminase [Escherichia coli KTE51]
gi|299880464|gb|EFI88675.1| cytidine deaminase [Escherichia coli MS 196-1]
gi|431093324|gb|ELD98990.1| cytidine deaminase [Escherichia coli KTE51]
Length = 294
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + +R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLP-----DREAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILL------NLKGYDYPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|123443007|ref|YP_001006982.1| cytidine deaminase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122089968|emb|CAL12825.1| cytidine deaminase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 294
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 130/242 (53%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F VGA+ G SG ++ G N+EF G PL Q+IHAEQ +T+ L E L + V+
Sbjct: 67 PVSNFKVGAIARGVSGNLYFGANMEFSGAPLQQTIHAEQCAVTHAWLRNEASLVSITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + ++I + + R L LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTGLHIHLPN-----RPASTLGQYLPDSFGPKDL--NITTLLMDP 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G +I ET + L AAL+ AN SHAPYS SGVA+ + IY G Y
Sbjct: 180 VDHGY-------KITET----DVLTQAALDGANHSHAPYSNSHSGVALEAADSTIYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ A S R A LVE V+ Q +A + L
Sbjct: 229 AENAAFNPSLPPLQAALI---MANMSDKNCNSIRR---AVLVEGNKPVLTQWNATQATLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|15641244|ref|NP_230876.1| cytidine deaminase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591214|ref|ZP_01678516.1| cytidine deaminase [Vibrio cholerae 2740-80]
gi|153212307|ref|ZP_01948095.1| cytidine deaminase [Vibrio cholerae 1587]
gi|153819196|ref|ZP_01971863.1| cytidine deaminase [Vibrio cholerae NCTC 8457]
gi|153823031|ref|ZP_01975698.1| cytidine deaminase [Vibrio cholerae B33]
gi|153829734|ref|ZP_01982401.1| cytidine deaminase [Vibrio cholerae 623-39]
gi|227081403|ref|YP_002809954.1| cytidine deaminase [Vibrio cholerae M66-2]
gi|229505180|ref|ZP_04394690.1| cytidine deaminase [Vibrio cholerae BX 330286]
gi|229511149|ref|ZP_04400628.1| cytidine deaminase [Vibrio cholerae B33]
gi|229515607|ref|ZP_04405066.1| cytidine deaminase [Vibrio cholerae TMA 21]
gi|229518267|ref|ZP_04407711.1| cytidine deaminase [Vibrio cholerae RC9]
gi|229521346|ref|ZP_04410765.1| cytidine deaminase [Vibrio cholerae TM 11079-80]
gi|229608200|ref|YP_002878848.1| cytidine deaminase [Vibrio cholerae MJ-1236]
gi|254848356|ref|ZP_05237706.1| cytidine deaminase [Vibrio cholerae MO10]
gi|255745630|ref|ZP_05419578.1| cytidine deaminase [Vibrio cholera CIRS 101]
gi|262159094|ref|ZP_06030206.1| cytidine deaminase [Vibrio cholerae INDRE 91/1]
gi|262191427|ref|ZP_06049615.1| cytidine deaminase [Vibrio cholerae CT 5369-93]
gi|298498675|ref|ZP_07008482.1| cytidine deaminase [Vibrio cholerae MAK 757]
gi|360035131|ref|YP_004936894.1| cytidine deaminase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379741045|ref|YP_005333014.1| cytidine deaminase [Vibrio cholerae IEC224]
gi|417813254|ref|ZP_12459911.1| cytidine deaminase [Vibrio cholerae HC-49A2]
gi|417816119|ref|ZP_12462751.1| cytidine deaminase [Vibrio cholerae HCUF01]
gi|418332267|ref|ZP_12943201.1| cytidine deaminase [Vibrio cholerae HC-06A1]
gi|418337010|ref|ZP_12945908.1| cytidine deaminase [Vibrio cholerae HC-23A1]
gi|418343524|ref|ZP_12950310.1| cytidine deaminase [Vibrio cholerae HC-28A1]
gi|418348678|ref|ZP_12953412.1| cytidine deaminase [Vibrio cholerae HC-43A1]
gi|418354977|ref|ZP_12957698.1| cytidine deaminase [Vibrio cholerae HC-61A1]
gi|419825725|ref|ZP_14349229.1| cytidine deaminase [Vibrio cholerae CP1033(6)]
gi|419829803|ref|ZP_14353289.1| cytidine deaminase [Vibrio cholerae HC-1A2]
gi|419832776|ref|ZP_14356238.1| cytidine deaminase [Vibrio cholerae HC-61A2]
gi|419836085|ref|ZP_14359528.1| cytidine deaminase [Vibrio cholerae HC-46B1]
gi|421316388|ref|ZP_15766959.1| cytidine deaminase [Vibrio cholerae CP1032(5)]
gi|421320846|ref|ZP_15771403.1| cytidine deaminase [Vibrio cholerae CP1038(11)]
gi|421324838|ref|ZP_15775364.1| cytidine deaminase [Vibrio cholerae CP1041(14)]
gi|421328500|ref|ZP_15779014.1| cytidine deaminase [Vibrio cholerae CP1042(15)]
gi|421331521|ref|ZP_15782001.1| cytidine deaminase [Vibrio cholerae CP1046(19)]
gi|421335094|ref|ZP_15785561.1| cytidine deaminase [Vibrio cholerae CP1048(21)]
gi|421338989|ref|ZP_15789424.1| cytidine deaminase [Vibrio cholerae HC-20A2]
gi|421342806|ref|ZP_15793211.1| cytidine deaminase [Vibrio cholerae HC-43B1]
gi|421347074|ref|ZP_15797456.1| cytidine deaminase [Vibrio cholerae HC-46A1]
gi|421354000|ref|ZP_15804332.1| cytidine deaminase [Vibrio cholerae HE-45]
gi|422306831|ref|ZP_16394002.1| cytidine deaminase [Vibrio cholerae CP1035(8)]
gi|422891341|ref|ZP_16933721.1| cytidine deaminase [Vibrio cholerae HC-40A1]
gi|422902552|ref|ZP_16937551.1| cytidine deaminase [Vibrio cholerae HC-48A1]
gi|422906431|ref|ZP_16941263.1| cytidine deaminase [Vibrio cholerae HC-70A1]
gi|422913017|ref|ZP_16947536.1| cytidine deaminase [Vibrio cholerae HFU-02]
gi|422916990|ref|ZP_16951318.1| cytidine deaminase [Vibrio cholerae HC-02A1]
gi|422922486|ref|ZP_16955672.1| cytidine deaminase [Vibrio cholerae BJG-01]
gi|422925497|ref|ZP_16958522.1| cytidine deaminase [Vibrio cholerae HC-38A1]
gi|423144819|ref|ZP_17132428.1| cytidine deaminase [Vibrio cholerae HC-19A1]
gi|423149497|ref|ZP_17136825.1| cytidine deaminase [Vibrio cholerae HC-21A1]
gi|423153313|ref|ZP_17140507.1| cytidine deaminase [Vibrio cholerae HC-22A1]
gi|423156125|ref|ZP_17143229.1| cytidine deaminase [Vibrio cholerae HC-32A1]
gi|423159952|ref|ZP_17146920.1| cytidine deaminase [Vibrio cholerae HC-33A2]
gi|423164670|ref|ZP_17151428.1| cytidine deaminase [Vibrio cholerae HC-48B2]
gi|423730799|ref|ZP_17704113.1| cytidine deaminase [Vibrio cholerae HC-17A1]
gi|423734632|ref|ZP_17707844.1| cytidine deaminase [Vibrio cholerae HC-41B1]
gi|423753962|ref|ZP_17712120.1| cytidine deaminase [Vibrio cholerae HC-50A2]
gi|423819660|ref|ZP_17715918.1| cytidine deaminase [Vibrio cholerae HC-55C2]
gi|423852993|ref|ZP_17719711.1| cytidine deaminase [Vibrio cholerae HC-59A1]
gi|423880417|ref|ZP_17723313.1| cytidine deaminase [Vibrio cholerae HC-60A1]
gi|423892491|ref|ZP_17726174.1| cytidine deaminase [Vibrio cholerae HC-62A1]
gi|423927269|ref|ZP_17730791.1| cytidine deaminase [Vibrio cholerae HC-77A1]
gi|423952409|ref|ZP_17734123.1| cytidine deaminase [Vibrio cholerae HE-40]
gi|423982061|ref|ZP_17737906.1| cytidine deaminase [Vibrio cholerae HE-46]
gi|423997405|ref|ZP_17740664.1| cytidine deaminase [Vibrio cholerae HC-02C1]
gi|424001813|ref|ZP_17744899.1| cytidine deaminase [Vibrio cholerae HC-17A2]
gi|424005973|ref|ZP_17748953.1| cytidine deaminase [Vibrio cholerae HC-37A1]
gi|424008916|ref|ZP_17751863.1| cytidine deaminase [Vibrio cholerae HC-44C1]
gi|424016114|ref|ZP_17755955.1| cytidine deaminase [Vibrio cholerae HC-55B2]
gi|424019050|ref|ZP_17758846.1| cytidine deaminase [Vibrio cholerae HC-59B1]
gi|424023992|ref|ZP_17763652.1| cytidine deaminase [Vibrio cholerae HC-62B1]
gi|424026843|ref|ZP_17766456.1| cytidine deaminase [Vibrio cholerae HC-69A1]
gi|424586114|ref|ZP_18025704.1| cytidine deaminase [Vibrio cholerae CP1030(3)]
gi|424594813|ref|ZP_18034146.1| cytidine deaminase [Vibrio cholerae CP1040(13)]
gi|424598680|ref|ZP_18037874.1| cytidine deaminase [Vibrio Cholerae CP1044(17)]
gi|424601420|ref|ZP_18040573.1| cytidine deaminase [Vibrio cholerae CP1047(20)]
gi|424606409|ref|ZP_18045369.1| cytidine deaminase [Vibrio cholerae CP1050(23)]
gi|424610240|ref|ZP_18049094.1| cytidine deaminase [Vibrio cholerae HC-39A1]
gi|424613046|ref|ZP_18051849.1| cytidine deaminase [Vibrio cholerae HC-41A1]
gi|424616863|ref|ZP_18055550.1| cytidine deaminase [Vibrio cholerae HC-42A1]
gi|424621812|ref|ZP_18060335.1| cytidine deaminase [Vibrio cholerae HC-47A1]
gi|424624595|ref|ZP_18063067.1| cytidine deaminase [Vibrio cholerae HC-50A1]
gi|424629094|ref|ZP_18067391.1| cytidine deaminase [Vibrio cholerae HC-51A1]
gi|424633126|ref|ZP_18071236.1| cytidine deaminase [Vibrio cholerae HC-52A1]
gi|424636215|ref|ZP_18074230.1| cytidine deaminase [Vibrio cholerae HC-55A1]
gi|424640154|ref|ZP_18078044.1| cytidine deaminase [Vibrio cholerae HC-56A1]
gi|424644789|ref|ZP_18082537.1| cytidine deaminase [Vibrio cholerae HC-56A2]
gi|424648189|ref|ZP_18085859.1| cytidine deaminase [Vibrio cholerae HC-57A1]
gi|424652466|ref|ZP_18089942.1| cytidine deaminase [Vibrio cholerae HC-57A2]
gi|424656368|ref|ZP_18093666.1| cytidine deaminase [Vibrio cholerae HC-81A2]
gi|424660341|ref|ZP_18097588.1| cytidine deaminase [Vibrio cholerae HE-16]
gi|429885516|ref|ZP_19367101.1| Cytidine deaminase [Vibrio cholerae PS15]
gi|440709495|ref|ZP_20890152.1| cytidine deaminase [Vibrio cholerae 4260B]
gi|443503320|ref|ZP_21070301.1| cytidine deaminase [Vibrio cholerae HC-64A1]
gi|443507227|ref|ZP_21074011.1| cytidine deaminase [Vibrio cholerae HC-65A1]
gi|443511353|ref|ZP_21078008.1| cytidine deaminase [Vibrio cholerae HC-67A1]
gi|443514907|ref|ZP_21081435.1| cytidine deaminase [Vibrio cholerae HC-68A1]
gi|443518707|ref|ZP_21085117.1| cytidine deaminase [Vibrio cholerae HC-71A1]
gi|443523595|ref|ZP_21089823.1| cytidine deaminase [Vibrio cholerae HC-72A2]
gi|443527012|ref|ZP_21093078.1| cytidine deaminase [Vibrio cholerae HC-78A1]
gi|443531208|ref|ZP_21097223.1| cytidine deaminase [Vibrio cholerae HC-7A1]
gi|443534982|ref|ZP_21100877.1| cytidine deaminase [Vibrio cholerae HC-80A1]
gi|443538550|ref|ZP_21104405.1| cytidine deaminase [Vibrio cholerae HC-81A1]
gi|449056275|ref|ZP_21734943.1| Cytidine deaminase [Vibrio cholerae O1 str. Inaba G4222]
gi|81623150|sp|Q9KSM5.1|CDD_VIBCH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|254813808|sp|C3LLS7.1|CDD_VIBCM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|9655712|gb|AAF94390.1| cytidine deaminase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121546939|gb|EAX57088.1| cytidine deaminase [Vibrio cholerae 2740-80]
gi|124116685|gb|EAY35505.1| cytidine deaminase [Vibrio cholerae 1587]
gi|126510282|gb|EAZ72876.1| cytidine deaminase [Vibrio cholerae NCTC 8457]
gi|126519459|gb|EAZ76682.1| cytidine deaminase [Vibrio cholerae B33]
gi|148874768|gb|EDL72903.1| cytidine deaminase [Vibrio cholerae 623-39]
gi|227009291|gb|ACP05503.1| cytidine deaminase [Vibrio cholerae M66-2]
gi|229341444|gb|EEO06447.1| cytidine deaminase [Vibrio cholerae TM 11079-80]
gi|229344982|gb|EEO09956.1| cytidine deaminase [Vibrio cholerae RC9]
gi|229347376|gb|EEO12336.1| cytidine deaminase [Vibrio cholerae TMA 21]
gi|229351114|gb|EEO16055.1| cytidine deaminase [Vibrio cholerae B33]
gi|229357403|gb|EEO22320.1| cytidine deaminase [Vibrio cholerae BX 330286]
gi|229370855|gb|ACQ61278.1| cytidine deaminase [Vibrio cholerae MJ-1236]
gi|254844061|gb|EET22475.1| cytidine deaminase [Vibrio cholerae MO10]
gi|255736705|gb|EET92102.1| cytidine deaminase [Vibrio cholera CIRS 101]
gi|262029279|gb|EEY47931.1| cytidine deaminase [Vibrio cholerae INDRE 91/1]
gi|262032716|gb|EEY51266.1| cytidine deaminase [Vibrio cholerae CT 5369-93]
gi|297543008|gb|EFH79058.1| cytidine deaminase [Vibrio cholerae MAK 757]
gi|340041845|gb|EGR02811.1| cytidine deaminase [Vibrio cholerae HCUF01]
gi|340042558|gb|EGR03523.1| cytidine deaminase [Vibrio cholerae HC-49A2]
gi|341623566|gb|EGS49090.1| cytidine deaminase [Vibrio cholerae HC-70A1]
gi|341623638|gb|EGS49161.1| cytidine deaminase [Vibrio cholerae HC-48A1]
gi|341624635|gb|EGS50120.1| cytidine deaminase [Vibrio cholerae HC-40A1]
gi|341638383|gb|EGS63030.1| cytidine deaminase [Vibrio cholerae HC-02A1]
gi|341639454|gb|EGS64071.1| cytidine deaminase [Vibrio cholerae HFU-02]
gi|341645961|gb|EGS70081.1| cytidine deaminase [Vibrio cholerae BJG-01]
gi|341647367|gb|EGS71449.1| cytidine deaminase [Vibrio cholerae HC-38A1]
gi|356419078|gb|EHH72636.1| cytidine deaminase [Vibrio cholerae HC-06A1]
gi|356419766|gb|EHH73303.1| cytidine deaminase [Vibrio cholerae HC-21A1]
gi|356424985|gb|EHH78374.1| cytidine deaminase [Vibrio cholerae HC-19A1]
gi|356431529|gb|EHH84733.1| cytidine deaminase [Vibrio cholerae HC-22A1]
gi|356432588|gb|EHH85785.1| cytidine deaminase [Vibrio cholerae HC-23A1]
gi|356436268|gb|EHH89386.1| cytidine deaminase [Vibrio cholerae HC-28A1]
gi|356441799|gb|EHH94675.1| cytidine deaminase [Vibrio cholerae HC-32A1]
gi|356447417|gb|EHI00208.1| cytidine deaminase [Vibrio cholerae HC-43A1]
gi|356449068|gb|EHI01828.1| cytidine deaminase [Vibrio cholerae HC-33A2]
gi|356453379|gb|EHI06042.1| cytidine deaminase [Vibrio cholerae HC-61A1]
gi|356455479|gb|EHI08121.1| cytidine deaminase [Vibrio cholerae HC-48B2]
gi|356646285|gb|AET26340.1| cytidine deaminase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794555|gb|AFC58026.1| cytidine deaminase [Vibrio cholerae IEC224]
gi|395920508|gb|EJH31330.1| cytidine deaminase [Vibrio cholerae CP1041(14)]
gi|395921345|gb|EJH32165.1| cytidine deaminase [Vibrio cholerae CP1032(5)]
gi|395923828|gb|EJH34639.1| cytidine deaminase [Vibrio cholerae CP1038(11)]
gi|395930006|gb|EJH40755.1| cytidine deaminase [Vibrio cholerae CP1042(15)]
gi|395932785|gb|EJH43528.1| cytidine deaminase [Vibrio cholerae CP1046(19)]
gi|395936955|gb|EJH47678.1| cytidine deaminase [Vibrio cholerae CP1048(21)]
gi|395943323|gb|EJH53998.1| cytidine deaminase [Vibrio cholerae HC-43B1]
gi|395943937|gb|EJH54611.1| cytidine deaminase [Vibrio cholerae HC-20A2]
gi|395946134|gb|EJH56798.1| cytidine deaminase [Vibrio cholerae HC-46A1]
gi|395953125|gb|EJH63738.1| cytidine deaminase [Vibrio cholerae HE-45]
gi|395960712|gb|EJH71073.1| cytidine deaminase [Vibrio cholerae HC-56A2]
gi|395961768|gb|EJH72079.1| cytidine deaminase [Vibrio cholerae HC-57A2]
gi|395965114|gb|EJH75298.1| cytidine deaminase [Vibrio cholerae HC-42A1]
gi|395972357|gb|EJH81951.1| cytidine deaminase [Vibrio cholerae HC-47A1]
gi|395976126|gb|EJH85586.1| cytidine deaminase [Vibrio cholerae CP1030(3)]
gi|395977802|gb|EJH87200.1| cytidine deaminase [Vibrio cholerae CP1047(20)]
gi|408008474|gb|EKG46452.1| cytidine deaminase [Vibrio cholerae HC-39A1]
gi|408014302|gb|EKG51956.1| cytidine deaminase [Vibrio cholerae HC-50A1]
gi|408014887|gb|EKG52503.1| cytidine deaminase [Vibrio cholerae HC-41A1]
gi|408019941|gb|EKG57310.1| cytidine deaminase [Vibrio cholerae HC-52A1]
gi|408025026|gb|EKG62096.1| cytidine deaminase [Vibrio cholerae HC-56A1]
gi|408025755|gb|EKG62801.1| cytidine deaminase [Vibrio cholerae HC-55A1]
gi|408034759|gb|EKG71244.1| cytidine deaminase [Vibrio cholerae HC-57A1]
gi|408035086|gb|EKG71565.1| cytidine deaminase [Vibrio cholerae CP1040(13)]
gi|408043750|gb|EKG79730.1| cytidine deaminase [Vibrio Cholerae CP1044(17)]
gi|408045106|gb|EKG80973.1| cytidine deaminase [Vibrio cholerae CP1050(23)]
gi|408050824|gb|EKG85963.1| cytidine deaminase [Vibrio cholerae HE-16]
gi|408055750|gb|EKG90664.1| cytidine deaminase [Vibrio cholerae HC-81A2]
gi|408057490|gb|EKG92336.1| cytidine deaminase [Vibrio cholerae HC-51A1]
gi|408609806|gb|EKK83182.1| cytidine deaminase [Vibrio cholerae CP1033(6)]
gi|408621388|gb|EKK94391.1| cytidine deaminase [Vibrio cholerae HC-1A2]
gi|408625179|gb|EKK98096.1| cytidine deaminase [Vibrio cholerae CP1035(8)]
gi|408625555|gb|EKK98461.1| cytidine deaminase [Vibrio cholerae HC-17A1]
gi|408630933|gb|EKL03505.1| cytidine deaminase [Vibrio cholerae HC-41B1]
gi|408635944|gb|EKL08120.1| cytidine deaminase [Vibrio cholerae HC-55C2]
gi|408638603|gb|EKL10491.1| cytidine deaminase [Vibrio cholerae HC-50A2]
gi|408642754|gb|EKL14498.1| cytidine deaminase [Vibrio cholerae HC-60A1]
gi|408643263|gb|EKL14993.1| cytidine deaminase [Vibrio cholerae HC-59A1]
gi|408651420|gb|EKL22676.1| cytidine deaminase [Vibrio cholerae HC-61A2]
gi|408656431|gb|EKL27526.1| cytidine deaminase [Vibrio cholerae HC-77A1]
gi|408657664|gb|EKL28741.1| cytidine deaminase [Vibrio cholerae HC-62A1]
gi|408660273|gb|EKL31294.1| cytidine deaminase [Vibrio cholerae HE-40]
gi|408665061|gb|EKL35880.1| cytidine deaminase [Vibrio cholerae HE-46]
gi|408847372|gb|EKL87443.1| cytidine deaminase [Vibrio cholerae HC-37A1]
gi|408848561|gb|EKL88609.1| cytidine deaminase [Vibrio cholerae HC-17A2]
gi|408853501|gb|EKL93291.1| cytidine deaminase [Vibrio cholerae HC-02C1]
gi|408857950|gb|EKL97629.1| cytidine deaminase [Vibrio cholerae HC-46B1]
gi|408861148|gb|EKM00747.1| cytidine deaminase [Vibrio cholerae HC-55B2]
gi|408865067|gb|EKM04479.1| cytidine deaminase [Vibrio cholerae HC-44C1]
gi|408868764|gb|EKM08078.1| cytidine deaminase [Vibrio cholerae HC-59B1]
gi|408871594|gb|EKM10828.1| cytidine deaminase [Vibrio cholerae HC-62B1]
gi|408879927|gb|EKM18864.1| cytidine deaminase [Vibrio cholerae HC-69A1]
gi|429227633|gb|EKY33622.1| Cytidine deaminase [Vibrio cholerae PS15]
gi|439975084|gb|ELP51220.1| cytidine deaminase [Vibrio cholerae 4260B]
gi|443432275|gb|ELS74804.1| cytidine deaminase [Vibrio cholerae HC-64A1]
gi|443436260|gb|ELS82383.1| cytidine deaminase [Vibrio cholerae HC-65A1]
gi|443439528|gb|ELS89226.1| cytidine deaminase [Vibrio cholerae HC-67A1]
gi|443443737|gb|ELS97022.1| cytidine deaminase [Vibrio cholerae HC-68A1]
gi|443447756|gb|ELT04398.1| cytidine deaminase [Vibrio cholerae HC-71A1]
gi|443450327|gb|ELT10603.1| cytidine deaminase [Vibrio cholerae HC-72A2]
gi|443454588|gb|ELT18389.1| cytidine deaminase [Vibrio cholerae HC-78A1]
gi|443458291|gb|ELT25687.1| cytidine deaminase [Vibrio cholerae HC-7A1]
gi|443461844|gb|ELT32900.1| cytidine deaminase [Vibrio cholerae HC-80A1]
gi|443466139|gb|ELT40798.1| cytidine deaminase [Vibrio cholerae HC-81A1]
gi|448264098|gb|EMB01337.1| Cytidine deaminase [Vibrio cholerae O1 str. Inaba G4222]
Length = 295
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>gi|218700615|ref|YP_002408244.1| cytidine deaminase [Escherichia coli IAI39]
gi|386624838|ref|YP_006144566.1| cytidine/deoxycytidine deaminase [Escherichia coli O7:K1 str. CE10]
gi|226701674|sp|B7NMA8.1|CDD_ECO7I RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|218370601|emb|CAR18408.1| cytidine/deoxycytidine deaminase [Escherichia coli IAI39]
gi|349738575|gb|AEQ13281.1| cytidine/deoxycytidine deaminase [Escherichia coli O7:K1 str. CE10]
Length = 294
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L+ + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALEAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|254226440|ref|ZP_04920027.1| cytidine deaminase [Vibrio cholerae V51]
gi|384424370|ref|YP_005633728.1| Cytidine deaminase [Vibrio cholerae LMA3984-4]
gi|125621062|gb|EAZ49409.1| cytidine deaminase [Vibrio cholerae V51]
gi|327483923|gb|AEA78330.1| Cytidine deaminase [Vibrio cholerae LMA3984-4]
Length = 295
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>gi|229529686|ref|ZP_04419076.1| cytidine deaminase [Vibrio cholerae 12129(1)]
gi|229333460|gb|EEN98946.1| cytidine deaminase [Vibrio cholerae 12129(1)]
Length = 295
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>gi|421262974|ref|ZP_15714059.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401690387|gb|EJS85668.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 297
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 38 PYFTVE-----YLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 92
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 93 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 152
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL D+ LL+ N +++ ET++P
Sbjct: 153 LPHSQNN-----LLHSYLPDAFGPADL---DIQHFLLDAQDNQLAY--------ETQDP- 195
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 196 --VMLTALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLL 253
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 254 L---SGDTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDISLDY 294
>gi|167551139|ref|ZP_02344894.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205324106|gb|EDZ11945.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 294
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 130/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G++ + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGLTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|15602124|ref|NP_245196.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
Pm70]
gi|81637270|sp|Q9CP11.1|CDD_PASMU RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|12720488|gb|AAK02343.1| Cdd [Pasteurella multocida subsp. multocida str. Pm70]
Length = 294
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 35 PYFTVE-----HLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 89
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 90 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 149
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL D+ LL+ N +++ ET++P
Sbjct: 150 LPHSQNN-----LLHSYLPDAFGPADL---DIQHFLLDAQNNQLTY--------ETQDP- 192
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 193 --VMLTALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLL 250
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 251 L---SGDTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDIPLDY 291
>gi|423140753|ref|ZP_17128391.1| cytidine deaminase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379053307|gb|EHY71198.1| cytidine deaminase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 294
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 142/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTTGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFALT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL +G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGALNLLSLSGY 252
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 253 D------YADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|437840310|ref|ZP_20846409.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435297095|gb|ELO73391.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 262
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 33 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 92
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 93 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 145
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 146 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 193
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 194 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 247
Query: 280 LQVI 283
L+ +
Sbjct: 248 LKAL 251
>gi|377576434|ref|ZP_09805418.1| cytidine deaminase [Escherichia hermannii NBRC 105704]
gi|377542466|dbj|GAB50583.1| cytidine deaminase [Escherichia hermannii NBRC 105704]
Length = 294
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 145/274 (52%), Gaps = 27/274 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+E RF ++ A +++ + ++ GL+ +L L+ A A PIS F+VGA+ G SG
Sbjct: 24 LENDRFPAMLTAEQSQQLQRQCGLSEDELAFALLPLAAAYAETPISHFNVGAIARGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+E+PG+ L Q++HAEQ IT+ + E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 LWFGANMEYPGIALQQTVHAEQSAITHAWMGGETALRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
D++I + R L LPD FGP DL K E H +
Sbjct: 144 DLHIHLPG-----RAAATLKDYLPDAFGPRDLDIKTTIFDAEDHGFALQ----------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L A+ AAN+SHAPY++ P GVA+ +G I GSY E+AA+NPSL P+QAAL
Sbjct: 188 ---GDELSQRAIAAANRSHAPYTQSPCGVALELRDGTILTGSYAENAAFNPSLPPLQAAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
+ G + + I A L E D + Q
Sbjct: 245 NLVILKGYA------FADIQRALLAELPDGNISQ 272
>gi|345430191|ref|YP_004823311.1| cytidine/deoxycytidine deaminase [Haemophilus parainfluenzae T3T1]
gi|301156254|emb|CBW15725.1| cytidine/deoxycytidine deaminase [Haemophilus parainfluenzae T3T1]
Length = 291
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 147/281 (52%), Gaps = 26/281 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + S+ + LT +QL L+ A + PIS+FHVGA+ +G SG + G N EF G
Sbjct: 33 AEKVRSICDEFKLTPVQLGLALLPVAACYSHTPISEFHVGAIAIGESGDFYFGANQEFKG 92
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
+ Q+IHAEQ I++ L EPR+ + V+ PCGHCRQF+ EL D+ I + +
Sbjct: 93 SSMAQTIHAEQSAISHAWLRNEPRITDIVVNYTPCGHCRQFMNELYQADDLKIHLPHSQN 152
Query: 130 NERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAA 189
N PL LPD FGP D L D+ LLL + G + ++ + A
Sbjct: 153 N-----PLPQYLPDSFGPKD-LGVDL-LLLNKEEQGFTLTT-----------EDEVANKA 194
Query: 190 LEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSG 248
+ AN++H+PYSK P GV I+ G + G Y E+AA+NPSL +Q A+ AYL +
Sbjct: 195 ILGANRAHSPYSKSPHGVGILFKNGEMICGRYAENAAFNPSLPAMQTAINFAYL----NQ 250
Query: 249 GGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ER+V A EK + ++ A +LL + K E+
Sbjct: 251 LDVSKIERVVFA---EKPLRLSHRKMAEQLLKSLCKVKMEY 288
>gi|297578826|ref|ZP_06940754.1| cytidine deaminase [Vibrio cholerae RC385]
gi|297536420|gb|EFH75253.1| cytidine deaminase [Vibrio cholerae RC385]
Length = 295
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 148/280 (52%), Gaps = 26/280 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FENIEAAALVESATGKISHLADTQATLEVINP 286
>gi|417334897|ref|ZP_12117930.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353573392|gb|EHC36767.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 263
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 1 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 60
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 61 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 120
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 121 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 161
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 162 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 220
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 221 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 252
>gi|423121287|ref|ZP_17108971.1| cytidine deaminase [Klebsiella oxytoca 10-5246]
gi|376394122|gb|EHT06773.1| cytidine deaminase [Klebsiella oxytoca 10-5246]
Length = 294
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGERSLNAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL ++ + I + R+ H L H LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSSQVLRIHLPG-----REAHSLQHYLPDAFGPKDLEIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + L AA++AAN+ H PYS+ PSGVA+ +G I+ GSY
Sbjct: 181 DHGFPLT------------GDTLAQAAIQAANRCHMPYSQSPSGVALELKDGTIFAGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAALIQWDATVATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|28898072|ref|NP_797677.1| cytidine deaminase [Vibrio parahaemolyticus RIMD 2210633]
gi|153836567|ref|ZP_01989234.1| cytidine deaminase [Vibrio parahaemolyticus AQ3810]
gi|260366373|ref|ZP_05778812.1| cytidine deaminase [Vibrio parahaemolyticus K5030]
gi|260878421|ref|ZP_05890776.1| cytidine deaminase [Vibrio parahaemolyticus AN-5034]
gi|260897000|ref|ZP_05905496.1| cytidine deaminase [Vibrio parahaemolyticus Peru-466]
gi|81727922|sp|Q87Q52.1|CDD_VIBPA RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|28806286|dbj|BAC59561.1| cytidine deaminase [Vibrio parahaemolyticus RIMD 2210633]
gi|149750165|gb|EDM60910.1| cytidine deaminase [Vibrio parahaemolyticus AQ3810]
gi|308087801|gb|EFO37496.1| cytidine deaminase [Vibrio parahaemolyticus Peru-466]
gi|308091152|gb|EFO40847.1| cytidine deaminase [Vibrio parahaemolyticus AN-5034]
gi|308113176|gb|EFO50716.1| cytidine deaminase [Vibrio parahaemolyticus K5030]
Length = 295
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TLSAQQFEQLLSATSLSDKELRVALLPFAAAYSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 FFGVQLGQTVHAEQSAISHAWMKGEHGVKDITINFSPCGHCRQFMNELSTAKELKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + + HQ +C+ K+ L
Sbjct: 151 ----ERDEKSLHEYLPEAFGPADLGIESGLMAEVKHQ-----FVCDD--------KDALI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+EA N SHAPY+ SG+A+ G ++KG+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QQAVEAMNMSHAPYTNNLSGLALELANGRVFKGAYAENAAFNPSLPPLQVALIQVLLAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ ++ I AAALVE + + + L+ ++P
Sbjct: 254 T------FDSIKAAALVENSEGKISHLADTQSTLEALNPDI 288
>gi|146312388|ref|YP_001177462.1| cytidine deaminase [Enterobacter sp. 638]
gi|167006534|sp|A4WCI1.1|CDD_ENT38 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|145319264|gb|ABP61411.1| cytidine deaminase [Enterobacter sp. 638]
Length = 294
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 132/242 (54%), Gaps = 27/242 (11%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEHALNAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + ++ IN R+ H L LPD FGP DL D+ LL
Sbjct: 128 PCGHCRQFMNELNSGLELR-----INLPGREPHTLGDYLPDAFGPKDL---DIKTLLMDE 179
Query: 163 QN-GMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
QN G + + L +A+ AANKSHAPYS+ PSGVA+ +G I+ GSY
Sbjct: 180 QNHGYALT------------GDELTQSAIAAANKSHAPYSQSPSGVALECRDGRIFSGSY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 228 AENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAPLIQWDATAATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|121728807|ref|ZP_01681819.1| cytidine deaminase [Vibrio cholerae V52]
gi|262169452|ref|ZP_06037144.1| cytidine deaminase [Vibrio cholerae RC27]
gi|417824297|ref|ZP_12470888.1| cytidine deaminase [Vibrio cholerae HE48]
gi|121628895|gb|EAX61351.1| cytidine deaminase [Vibrio cholerae V52]
gi|262022265|gb|EEY40974.1| cytidine deaminase [Vibrio cholerae RC27]
gi|340047982|gb|EGR08905.1| cytidine deaminase [Vibrio cholerae HE48]
Length = 295
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SG+ L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGMEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRAAKTLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +G+ T + E L AL A N SH+
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEELIQQALRAMNISHS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G S +E I
Sbjct: 206 PYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGES------FEDIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVESATGKISHLADTQATLEVINPDI 288
>gi|425065034|ref|ZP_18468154.1| Cytidine deaminase [Pasteurella multocida subsp. gallicida P1059]
gi|404384488|gb|EJZ80922.1| Cytidine deaminase [Pasteurella multocida subsp. gallicida P1059]
Length = 297
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 148/286 (51%), Gaps = 29/286 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 38 PYFTVE-----HLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 92
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 93 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 152
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
+ +N L LPD FGP DL + LL+ N +++ ET++P
Sbjct: 153 LPHSQNNL-----LHSYLPDAFGPADLAIQH--FLLDAQDNQLTY--------ETQDP-- 195
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 196 -VILTALECANATHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLLL 254
Query: 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 255 ---SGDTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDIPLDY 294
>gi|168236352|ref|ZP_02661410.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194735797|ref|YP_002115272.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|226701690|sp|B4TNP0.1|CDD_SALSV RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|194711299|gb|ACF90520.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197290487|gb|EDY29842.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 294
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGTTMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|378774666|ref|YP_005176909.1| cytidine deaminase [Pasteurella multocida 36950]
gi|383310637|ref|YP_005363447.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
HN06]
gi|386834630|ref|YP_006239947.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
3480]
gi|425062946|ref|ZP_18466071.1| Cytidine deaminase [Pasteurella multocida subsp. gallicida X73]
gi|356597214|gb|AET15940.1| cytidine deaminase [Pasteurella multocida 36950]
gi|380871909|gb|AFF24276.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
HN06]
gi|385201333|gb|AFI46188.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
3480]
gi|404383652|gb|EJZ80103.1| Cytidine deaminase [Pasteurella multocida subsp. gallicida X73]
Length = 297
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 38 PYFTVE-----HLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 92
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 93 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 152
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL D+ LL+ N +++ ET++P
Sbjct: 153 LPHSQNN-----LLHSYLPDAFGPADL---DIQHFLLDAQDNQLAY--------ETQDP- 195
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 196 --VMLTALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLL 253
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 254 L---SGDTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDIPLDY 294
>gi|424590466|ref|ZP_18029903.1| cytidine deaminase [Vibrio cholerae CP1037(10)]
gi|408034608|gb|EKG71101.1| cytidine deaminase [Vibrio cholerae CP1037(10)]
Length = 295
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SG+ L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGMEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRAAKSLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +G+ T + E L AL A N SH+
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEELIQQALRAMNISHS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G S +E I
Sbjct: 206 PYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGES------FEDIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVESATGKISHLADTQATLEVINPDI 288
>gi|354724513|ref|ZP_09038728.1| cytidine deaminase [Enterobacter mori LMG 25706]
Length = 294
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKALSAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLQLR-----INLPGRAPHTLGDYLPDAFGPKDLEIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + + L AA+ AANKSH PYS+ PSGVA+ +G I+ GSY
Sbjct: 181 DHGFALS------------GDDLSEAAIRAANKSHTPYSQSPSGVALQCRDGRIFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAPLIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|170767300|ref|ZP_02901753.1| cytidine deaminase [Escherichia albertii TW07627]
gi|170123634|gb|EDS92565.1| cytidine deaminase [Escherichia albertii TW07627]
Length = 294
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAILAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|147675337|ref|YP_001216798.1| cytidine deaminase [Vibrio cholerae O395]
gi|227117698|ref|YP_002819594.1| cytidine deaminase [Vibrio cholerae O395]
gi|172047384|sp|A5F1V7.1|CDD_VIBC3 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|146317220|gb|ABQ21759.1| cytidine deaminase [Vibrio cholerae O395]
gi|227013148|gb|ACP09358.1| cytidine deaminase [Vibrio cholerae O395]
Length = 295
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SG+ L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGMEDSDLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>gi|417384303|ref|ZP_12149714.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353609296|gb|EHC62646.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|440286908|ref|YP_007339673.1| cytidine deaminase [Enterobacteriaceae bacterium strain FGI 57]
gi|440046430|gb|AGB77488.1| cytidine deaminase [Enterobacteriaceae bacterium strain FGI 57]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 127/241 (52%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG F GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWFFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKALAAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLALR-----INLPGRAPHTLKDYLPDAFGPKDLDIKT--LLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + L AA++AAN+SH PYSK PSGVA+ +G I+ GSY
Sbjct: 181 DHGYPLQ------------GDALTQAAIKAANRSHTPYSKSPSGVALELADGTIFSGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL G Y I A L E+ DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGALNLLSLHGYD------YPAITRAMLAERADAPLIQWDATVATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|197248405|ref|YP_002147154.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|440763095|ref|ZP_20942142.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|440769247|ref|ZP_20948207.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440771392|ref|ZP_20950310.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|226701684|sp|B5EYN3.1|CDD_SALA4 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|197212108|gb|ACH49505.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|436415235|gb|ELP13156.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436421024|gb|ELP18875.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|436421738|gb|ELP19581.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----NYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|419381387|ref|ZP_13922338.1| cytidine deaminase [Escherichia coli DEC14C]
gi|378227754|gb|EHX87922.1| cytidine deaminase [Escherichia coli DEC14C]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G+I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGHIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|62180770|ref|YP_217187.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|375115099|ref|ZP_09760269.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75482258|sp|Q57MF5.1|CDD_SALCH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|62128403|gb|AAX66106.1| cytidine/deoxycytidine deaminase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322715245|gb|EFZ06816.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|297521101|ref|ZP_06939487.1| cytidine deaminase [Escherichia coli OP50]
Length = 284
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|415793440|ref|ZP_11496137.1| cytidine deaminase, partial [Escherichia coli EPECa14]
gi|323152371|gb|EFZ38660.1| cytidine deaminase [Escherichia coli EPECa14]
Length = 287
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|194445222|ref|YP_002041454.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|418789269|ref|ZP_13345056.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418794070|ref|ZP_13349792.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418796667|ref|ZP_13352358.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418809735|ref|ZP_13365287.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418813889|ref|ZP_13369410.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418815156|ref|ZP_13370664.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418822945|ref|ZP_13378356.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418827444|ref|ZP_13382591.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|418830010|ref|ZP_13384973.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418836392|ref|ZP_13391276.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418840990|ref|ZP_13395813.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418844717|ref|ZP_13399503.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418850864|ref|ZP_13405580.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418855813|ref|ZP_13410464.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|418857921|ref|ZP_13412544.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418862216|ref|ZP_13416760.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418868423|ref|ZP_13422866.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|226701688|sp|B4SY15.1|CDD_SALNS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|194403885|gb|ACF64107.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|392760510|gb|EJA17345.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392762065|gb|EJA18881.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392770040|gb|EJA26768.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392773820|gb|EJA30516.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392775115|gb|EJA31810.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392787202|gb|EJA43750.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392793535|gb|EJA49979.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392799653|gb|EJA55909.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392800753|gb|EJA56983.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392802243|gb|EJA58457.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392809656|gb|EJA65690.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392813526|gb|EJA69490.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392818714|gb|EJA74598.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392820854|gb|EJA76695.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|392834599|gb|EJA90203.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392836668|gb|EJA92248.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|392838329|gb|EJA93893.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|16765513|ref|NP_461128.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161613125|ref|YP_001587090.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167991110|ref|ZP_02572209.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168229538|ref|ZP_02654596.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168242269|ref|ZP_02667201.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168259476|ref|ZP_02681449.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168466137|ref|ZP_02700007.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168818107|ref|ZP_02830107.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194451356|ref|YP_002046236.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194472954|ref|ZP_03078938.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|197261992|ref|ZP_03162066.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|200388921|ref|ZP_03215533.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205353318|ref|YP_002227119.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857617|ref|YP_002244268.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224583316|ref|YP_002637114.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238912625|ref|ZP_04656462.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|374981217|ref|ZP_09722547.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375002007|ref|ZP_09726347.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375124157|ref|ZP_09769321.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|378445618|ref|YP_005233250.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378450870|ref|YP_005238229.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378700096|ref|YP_005182053.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378954458|ref|YP_005211945.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378984745|ref|YP_005247900.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378989570|ref|YP_005252734.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379701411|ref|YP_005243139.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383496891|ref|YP_005397580.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|386591994|ref|YP_006088394.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|409250794|ref|YP_006886602.1| cytidine/deoxycytidine deaminase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416424069|ref|ZP_11691337.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416434194|ref|ZP_11697528.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416438406|ref|ZP_11699493.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416447744|ref|ZP_11705997.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416450541|ref|ZP_11707616.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416460469|ref|ZP_11714777.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416470238|ref|ZP_11718763.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416476710|ref|ZP_11721198.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416491437|ref|ZP_11727071.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416496175|ref|ZP_11729032.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416508118|ref|ZP_11735901.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416513714|ref|ZP_11738035.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416529760|ref|ZP_11744527.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416539687|ref|ZP_11750094.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416540671|ref|ZP_11750476.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416551703|ref|ZP_11756609.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416561687|ref|ZP_11761684.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416566648|ref|ZP_11763940.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|416575353|ref|ZP_11768385.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416586626|ref|ZP_11775638.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416594598|ref|ZP_11780430.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416602145|ref|ZP_11785202.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416607215|ref|ZP_11788397.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416611802|ref|ZP_11791031.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416623880|ref|ZP_11797662.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416630114|ref|ZP_11800521.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416636557|ref|ZP_11803120.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416652100|ref|ZP_11811502.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416669131|ref|ZP_11819156.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416678672|ref|ZP_11822726.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416700982|ref|ZP_11829247.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416705398|ref|ZP_11830879.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416713654|ref|ZP_11837209.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416720139|ref|ZP_11841905.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416721575|ref|ZP_11842740.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416733939|ref|ZP_11850734.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416738167|ref|ZP_11853195.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416751880|ref|ZP_11860281.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416759748|ref|ZP_11864573.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416760403|ref|ZP_11864796.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416767521|ref|ZP_11869981.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|417327480|ref|ZP_12112886.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417342383|ref|ZP_12123209.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417350118|ref|ZP_12128587.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417359399|ref|ZP_12133783.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|417366416|ref|ZP_12138712.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417374441|ref|ZP_12144194.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|417391884|ref|ZP_12154904.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417466718|ref|ZP_12165067.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417476363|ref|ZP_12170901.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|418484892|ref|ZP_13053882.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418496957|ref|ZP_13063382.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418500321|ref|ZP_13066719.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418503303|ref|ZP_13069668.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418509320|ref|ZP_13075616.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418512908|ref|ZP_13079143.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418527997|ref|ZP_13093950.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|418760505|ref|ZP_13316659.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418765098|ref|ZP_13321191.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418772120|ref|ZP_13328124.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418775336|ref|ZP_13331294.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781491|ref|ZP_13337374.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418783757|ref|ZP_13339602.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418803300|ref|ZP_13358921.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419728297|ref|ZP_14255263.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419736480|ref|ZP_14263320.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419741043|ref|ZP_14267755.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745190|ref|ZP_14271833.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419746833|ref|ZP_14273408.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|419789717|ref|ZP_14315397.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419792221|ref|ZP_14317863.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|421359403|ref|ZP_15809696.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421364027|ref|ZP_15814265.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421367067|ref|ZP_15817269.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421373047|ref|ZP_15823192.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421375412|ref|ZP_15825525.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421382194|ref|ZP_15832245.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421386908|ref|ZP_15836914.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421391247|ref|ZP_15841218.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395617|ref|ZP_15845553.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421397944|ref|ZP_15847853.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421402501|ref|ZP_15852359.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421409051|ref|ZP_15858846.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421411769|ref|ZP_15861533.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421418183|ref|ZP_15867889.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421422741|ref|ZP_15872409.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421424901|ref|ZP_15874538.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421433227|ref|ZP_15882795.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421434135|ref|ZP_15883685.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421441878|ref|ZP_15891338.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421443235|ref|ZP_15892677.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421449785|ref|ZP_15899165.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|421570022|ref|ZP_16015716.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421574427|ref|ZP_16020048.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421579965|ref|ZP_16025527.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421585705|ref|ZP_16031197.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|421883589|ref|ZP_16314818.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422026459|ref|ZP_16372850.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422031480|ref|ZP_16377649.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427551118|ref|ZP_18928153.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427567350|ref|ZP_18932868.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427587560|ref|ZP_18937658.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427611270|ref|ZP_18942525.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427634865|ref|ZP_18947418.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427656490|ref|ZP_18952183.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427661642|ref|ZP_18957096.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427670204|ref|ZP_18961896.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|436609104|ref|ZP_20513665.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436802766|ref|ZP_20525499.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436809493|ref|ZP_20528873.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436814755|ref|ZP_20532306.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436844177|ref|ZP_20537935.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436854493|ref|ZP_20544127.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436855783|ref|ZP_20544908.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436864284|ref|ZP_20550251.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436870249|ref|ZP_20554055.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436877740|ref|ZP_20558668.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886679|ref|ZP_20563099.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436893542|ref|ZP_20567449.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436901290|ref|ZP_20572200.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436912673|ref|ZP_20578502.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436920321|ref|ZP_20582917.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436926658|ref|ZP_20586484.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436936622|ref|ZP_20592062.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436940635|ref|ZP_20594579.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436946641|ref|ZP_20598168.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436961976|ref|ZP_20605350.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436969164|ref|ZP_20608285.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436976840|ref|ZP_20612090.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436989606|ref|ZP_20616613.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437001018|ref|ZP_20620814.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437022382|ref|ZP_20628351.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437036129|ref|ZP_20633861.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437044131|ref|ZP_20637084.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437052085|ref|ZP_20641645.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437059142|ref|ZP_20645989.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437064815|ref|ZP_20648589.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437077129|ref|ZP_20655337.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437083621|ref|ZP_20659275.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437092033|ref|ZP_20663633.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437113872|ref|ZP_20669074.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122065|ref|ZP_20672102.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437128653|ref|ZP_20675340.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437139188|ref|ZP_20681670.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437144140|ref|ZP_20684754.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151268|ref|ZP_20689145.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437162710|ref|ZP_20696272.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169958|ref|ZP_20700053.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437174136|ref|ZP_20702101.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437181184|ref|ZP_20706355.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437235901|ref|ZP_20713887.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437261936|ref|ZP_20718682.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437267388|ref|ZP_20721140.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437280659|ref|ZP_20728036.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437289933|ref|ZP_20731311.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437311881|ref|ZP_20735989.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437330418|ref|ZP_20741582.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437346866|ref|ZP_20747020.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437351284|ref|ZP_20747466.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437411014|ref|ZP_20752790.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437444164|ref|ZP_20758240.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437461023|ref|ZP_20761976.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437479731|ref|ZP_20768078.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437494368|ref|ZP_20772397.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437505349|ref|ZP_20775403.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437535223|ref|ZP_20781457.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437559624|ref|ZP_20785840.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437572290|ref|ZP_20789052.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437583591|ref|ZP_20792585.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437599995|ref|ZP_20797154.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437616832|ref|ZP_20802584.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437631390|ref|ZP_20806384.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437662166|ref|ZP_20813383.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437676312|ref|ZP_20816924.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437690116|ref|ZP_20820210.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437711829|ref|ZP_20826847.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437730243|ref|ZP_20831169.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437742061|ref|ZP_20833318.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437813086|ref|ZP_20841671.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|438041791|ref|ZP_20855770.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438082721|ref|ZP_20857907.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438099368|ref|ZP_20863384.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438109501|ref|ZP_20867464.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438129678|ref|ZP_20873378.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|445128465|ref|ZP_21380258.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445165190|ref|ZP_21394073.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445215824|ref|ZP_21401976.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445333745|ref|ZP_21414944.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445344322|ref|ZP_21417594.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445361594|ref|ZP_21423886.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|81594935|sp|Q8ZNM0.1|CDD_SALTY RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|189081901|sp|A9N6L3.1|CDD_SALPB RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701686|sp|B5R153.1|CDD_SALEP RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701687|sp|B4TAK5.1|CDD_SALHS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701742|sp|B5RC22.1|CDD_SALG2 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|254813806|sp|C0Q0V4.1|CDD_SALPC RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|16420720|gb|AAL21087.1| cytidine/deoxycytidine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161362489|gb|ABX66257.1| hypothetical protein SPAB_00833 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194409660|gb|ACF69879.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194459318|gb|EDX48157.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|195631358|gb|EDX49918.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197240247|gb|EDY22867.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|199606019|gb|EDZ04564.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205273099|emb|CAR38054.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205330501|gb|EDZ17265.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205335640|gb|EDZ22404.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205338512|gb|EDZ25276.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205345128|gb|EDZ31892.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205350906|gb|EDZ37537.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206709420|emb|CAR33761.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224467843|gb|ACN45673.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261247397|emb|CBG25222.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267994248|gb|ACY89133.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301158744|emb|CBW18256.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913173|dbj|BAJ37147.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320086622|emb|CBY96393.1| cytidine/deoxycytidine deaminase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224837|gb|EFX49900.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322615210|gb|EFY12132.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322617801|gb|EFY14697.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322624605|gb|EFY21436.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322626944|gb|EFY23740.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322634130|gb|EFY30866.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322635679|gb|EFY32389.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640186|gb|EFY36850.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322646391|gb|EFY42903.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322649358|gb|EFY45794.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322656479|gb|EFY52768.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322661455|gb|EFY57679.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322665657|gb|EFY61841.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322667181|gb|EFY63348.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322671187|gb|EFY67315.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322675173|gb|EFY71250.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322680781|gb|EFY76816.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322686956|gb|EFY82933.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323130510|gb|ADX17940.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323192720|gb|EFZ77947.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198848|gb|EFZ83947.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323205142|gb|EFZ90120.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323215790|gb|EGA00533.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221289|gb|EGA05712.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323223845|gb|EGA08148.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231236|gb|EGA15351.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233670|gb|EGA17762.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323237740|gb|EGA21800.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245723|gb|EGA29717.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246539|gb|EGA30518.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323253016|gb|EGA36849.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323254776|gb|EGA38579.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259524|gb|EGA43159.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323268307|gb|EGA51782.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271904|gb|EGA55320.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326628407|gb|EGE34750.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|332989117|gb|AEF08100.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|353076695|gb|EHB42455.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353570502|gb|EHC34752.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353570923|gb|EHC35036.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353589667|gb|EHC48400.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353592013|gb|EHC50144.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353599479|gb|EHC55637.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353613899|gb|EHC65885.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353629884|gb|EHC77591.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353641102|gb|EHC85918.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|357205069|gb|AET53115.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|357956708|gb|EHJ82028.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|363552163|gb|EHL36469.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363552733|gb|EHL37016.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363559767|gb|EHL43919.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363566118|gb|EHL50137.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363567294|gb|EHL51294.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363573880|gb|EHL57754.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363579484|gb|EHL63266.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|366055960|gb|EHN20293.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366057196|gb|EHN21500.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366069174|gb|EHN33300.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366073145|gb|EHN37220.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366078510|gb|EHN42511.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366082845|gb|EHN46775.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366827200|gb|EHN54109.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372204121|gb|EHP17652.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|379986815|emb|CCF87091.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380463712|gb|AFD59115.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|381291789|gb|EIC33018.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381292987|gb|EIC34160.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381299834|gb|EIC40902.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381306614|gb|EIC47487.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381320707|gb|EIC61249.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383799038|gb|AFH46120.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392615502|gb|EIW97941.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392618945|gb|EIX01331.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392732234|gb|EIZ89445.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392742047|gb|EIZ99142.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392742585|gb|EIZ99672.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392747259|gb|EJA04260.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392748409|gb|EJA05395.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392756769|gb|EJA13664.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392772829|gb|EJA29526.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|395985026|gb|EJH94199.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395985502|gb|EJH94672.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395989722|gb|EJH98856.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395998675|gb|EJI07702.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|395999294|gb|EJI08316.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396005398|gb|EJI14377.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396011549|gb|EJI20459.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396012256|gb|EJI21154.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396012657|gb|EJI21553.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396025982|gb|EJI34755.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396032038|gb|EJI40763.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396032140|gb|EJI40864.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396039350|gb|EJI47978.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396042056|gb|EJI50679.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396045270|gb|EJI53864.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396049443|gb|EJI57986.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396058497|gb|EJI66958.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396060741|gb|EJI69182.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396062555|gb|EJI70966.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396068601|gb|EJI76947.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396071019|gb|EJI79346.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|402521440|gb|EJW28778.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402524627|gb|EJW31924.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402525515|gb|EJW32803.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402529555|gb|EJW36788.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414017537|gb|EKT01245.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414018481|gb|EKT02130.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414020238|gb|EKT03827.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414032221|gb|EKT15232.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414033642|gb|EKT16591.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414036621|gb|EKT19438.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414046790|gb|EKT29105.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414047793|gb|EKT30059.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414052537|gb|EKT34573.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414059227|gb|EKT40816.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|434941814|gb|ELL48201.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|434957033|gb|ELL50707.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434967310|gb|ELL60145.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434970284|gb|ELL62904.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434972871|gb|ELL65259.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434978763|gb|ELL70755.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434983296|gb|ELL75104.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991997|gb|ELL83467.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434995319|gb|ELL86635.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435002577|gb|ELL93642.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435008624|gb|ELL99447.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011922|gb|ELM02625.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435018538|gb|ELM09000.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435020724|gb|ELM11113.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435026918|gb|ELM17049.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435027840|gb|ELM17932.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435036499|gb|ELM26318.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435039460|gb|ELM29241.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045540|gb|ELM35168.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435051115|gb|ELM40619.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435058441|gb|ELM47779.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435059265|gb|ELM48555.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435071173|gb|ELM60123.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435071316|gb|ELM60264.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435074463|gb|ELM63295.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435075572|gb|ELM64386.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435077010|gb|ELM65784.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435081335|gb|ELM69977.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435091487|gb|ELM79878.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435094955|gb|ELM83294.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435100557|gb|ELM88725.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435103967|gb|ELM92041.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435107364|gb|ELM95349.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435112939|gb|ELN00804.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435116170|gb|ELN03921.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435124211|gb|ELN11678.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435128169|gb|ELN15520.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435132710|gb|ELN19908.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435139131|gb|ELN26135.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435142630|gb|ELN29517.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435145151|gb|ELN31980.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435147738|gb|ELN34490.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435157985|gb|ELN44406.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435162307|gb|ELN48491.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435166732|gb|ELN52698.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435170147|gb|ELN55903.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435175904|gb|ELN61306.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435182197|gb|ELN67229.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435183013|gb|ELN67988.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435188926|gb|ELN73588.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435189294|gb|ELN73939.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435189602|gb|ELN74226.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435204219|gb|ELN87916.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435210544|gb|ELN93790.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435213787|gb|ELN96654.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435219408|gb|ELO01770.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435220715|gb|ELO02997.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435227266|gb|ELO08775.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435235406|gb|ELO16209.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435238935|gb|ELO19544.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435240584|gb|ELO20975.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435247930|gb|ELO27859.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435261560|gb|ELO40714.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435262913|gb|ELO41995.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435263489|gb|ELO42536.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435267812|gb|ELO46477.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435276705|gb|ELO54702.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435281745|gb|ELO59398.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435283463|gb|ELO61028.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435288049|gb|ELO65140.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435289504|gb|ELO66464.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435297168|gb|ELO73463.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435313142|gb|ELO86885.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435320379|gb|ELO93018.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435321866|gb|ELO94215.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435325922|gb|ELO97766.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435332650|gb|ELP03561.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444854927|gb|ELX79982.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444858891|gb|ELX83861.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444867028|gb|ELX91733.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444875432|gb|ELX99631.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444880494|gb|ELY04569.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444884600|gb|ELY08424.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|56412903|ref|YP_149978.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361834|ref|YP_002141470.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|81599359|sp|Q5PE68.1|CDD_SALPA RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701689|sp|B5BE52.1|CDD_SALPK RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|56127160|gb|AAV76666.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197093310|emb|CAR58758.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|417519269|ref|ZP_12181456.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353647056|gb|EHC90287.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 294
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|153826965|ref|ZP_01979632.1| cytidine deaminase [Vibrio cholerae MZO-2]
gi|149739213|gb|EDM53485.1| cytidine deaminase [Vibrio cholerae MZO-2]
Length = 295
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AA+LVE + + L+VI+P
Sbjct: 253 ES------FEDIEAASLVESATGKISHLADTQATLEVINPDI 288
>gi|422972124|ref|ZP_16975176.1| cytidine deaminase [Escherichia coli TA124]
gi|432719266|ref|ZP_19954235.1| cytidine deaminase [Escherichia coli KTE9]
gi|371598005|gb|EHN86820.1| cytidine deaminase [Escherichia coli TA124]
gi|431263078|gb|ELF55067.1| cytidine deaminase [Escherichia coli KTE9]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|422766752|ref|ZP_16820479.1| cytidine deaminase [Escherichia coli E1520]
gi|323936757|gb|EGB33042.1| cytidine deaminase [Escherichia coli E1520]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|432948024|ref|ZP_20143180.1| cytidine deaminase [Escherichia coli KTE196]
gi|433043726|ref|ZP_20231222.1| cytidine deaminase [Escherichia coli KTE117]
gi|431458002|gb|ELH38339.1| cytidine deaminase [Escherichia coli KTE196]
gi|431556047|gb|ELI29882.1| cytidine deaminase [Escherichia coli KTE117]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHELRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|432895162|ref|ZP_20106882.1| cytidine deaminase [Escherichia coli KTE165]
gi|431421529|gb|ELH03741.1| cytidine deaminase [Escherichia coli KTE165]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|26248523|ref|NP_754563.1| cytidine deaminase [Escherichia coli CFT073]
gi|91211429|ref|YP_541415.1| cytidine deaminase [Escherichia coli UTI89]
gi|110642352|ref|YP_670082.1| cytidine deaminase [Escherichia coli 536]
gi|117624345|ref|YP_853258.1| cytidine deaminase [Escherichia coli APEC O1]
gi|191170069|ref|ZP_03031623.1| cytidine deaminase [Escherichia coli F11]
gi|215487364|ref|YP_002329795.1| cytidine deaminase [Escherichia coli O127:H6 str. E2348/69]
gi|218559061|ref|YP_002391974.1| cytidine deaminase [Escherichia coli S88]
gi|218690292|ref|YP_002398504.1| cytidine deaminase [Escherichia coli ED1a]
gi|218705671|ref|YP_002413190.1| cytidine deaminase [Escherichia coli UMN026]
gi|222156899|ref|YP_002557038.1| Cytidine deaminase [Escherichia coli LF82]
gi|227887198|ref|ZP_04005003.1| cytidine deaminase [Escherichia coli 83972]
gi|237704608|ref|ZP_04535089.1| cytidine deaminase [Escherichia sp. 3_2_53FAA]
gi|293405611|ref|ZP_06649603.1| cytidine deaminase [Escherichia coli FVEC1412]
gi|293415426|ref|ZP_06658069.1| cytidine deaminase [Escherichia coli B185]
gi|298381292|ref|ZP_06990891.1| cytidine deaminase [Escherichia coli FVEC1302]
gi|300897801|ref|ZP_07116194.1| cytidine deaminase [Escherichia coli MS 198-1]
gi|300935065|ref|ZP_07150096.1| cytidine deaminase [Escherichia coli MS 21-1]
gi|300981482|ref|ZP_07175563.1| cytidine deaminase [Escherichia coli MS 200-1]
gi|300982857|ref|ZP_07176321.1| cytidine deaminase [Escherichia coli MS 45-1]
gi|301048879|ref|ZP_07195872.1| cytidine deaminase [Escherichia coli MS 185-1]
gi|306814742|ref|ZP_07448904.1| cytidine deaminase [Escherichia coli NC101]
gi|312967436|ref|ZP_07781651.1| cytidine deaminase [Escherichia coli 2362-75]
gi|331647794|ref|ZP_08348886.1| cytidine deaminase [Escherichia coli M605]
gi|331658222|ref|ZP_08359184.1| cytidine deaminase [Escherichia coli TA206]
gi|331663645|ref|ZP_08364555.1| cytidine deaminase [Escherichia coli TA143]
gi|331683820|ref|ZP_08384416.1| cytidine deaminase [Escherichia coli H299]
gi|386600021|ref|YP_006101527.1| cytidine deaminase [Escherichia coli IHE3034]
gi|386603832|ref|YP_006110132.1| cytidine deaminase [Escherichia coli UM146]
gi|386619760|ref|YP_006139340.1| Cytidine deaminase [Escherichia coli NA114]
gi|386629933|ref|YP_006149653.1| cytidine deaminase [Escherichia coli str. 'clone D i2']
gi|386634853|ref|YP_006154572.1| cytidine deaminase [Escherichia coli str. 'clone D i14']
gi|386639720|ref|YP_006106518.1| cytidine/deoxycytidine deaminase [Escherichia coli ABU 83972]
gi|387607828|ref|YP_006096684.1| cytidine deaminase [Escherichia coli 042]
gi|387617500|ref|YP_006120522.1| cytidine deaminase [Escherichia coli O83:H1 str. NRG 857C]
gi|387830078|ref|YP_003350015.1| cytidine/deoxycytidine deaminase [Escherichia coli SE15]
gi|416335329|ref|ZP_11672022.1| Cytidine deaminase [Escherichia coli WV_060327]
gi|417085405|ref|ZP_11952833.1| cytidine deaminase [Escherichia coli cloneA_i1]
gi|417286345|ref|ZP_12073634.1| cytidine deaminase [Escherichia coli TW07793]
gi|417587137|ref|ZP_12237908.1| cytidine deaminase [Escherichia coli STEC_C165-02]
gi|417662758|ref|ZP_12312339.1| cytidine deaminase [Escherichia coli AA86]
gi|417756396|ref|ZP_12404471.1| cytidine deaminase [Escherichia coli DEC2B]
gi|418997605|ref|ZP_13545199.1| cytidine deaminase [Escherichia coli DEC1A]
gi|419002683|ref|ZP_13550210.1| cytidine deaminase [Escherichia coli DEC1B]
gi|419008378|ref|ZP_13555809.1| cytidine deaminase [Escherichia coli DEC1C]
gi|419014059|ref|ZP_13561410.1| cytidine deaminase [Escherichia coli DEC1D]
gi|419019062|ref|ZP_13566369.1| cytidine deaminase [Escherichia coli DEC1E]
gi|419024562|ref|ZP_13571788.1| cytidine deaminase [Escherichia coli DEC2A]
gi|419029603|ref|ZP_13576766.1| cytidine deaminase [Escherichia coli DEC2C]
gi|419035377|ref|ZP_13582463.1| cytidine deaminase [Escherichia coli DEC2D]
gi|419040290|ref|ZP_13587318.1| cytidine deaminase [Escherichia coli DEC2E]
gi|419700980|ref|ZP_14228582.1| cytidine deaminase [Escherichia coli SCI-07]
gi|419914399|ref|ZP_14432797.1| cytidine deaminase [Escherichia coli KD1]
gi|419932783|ref|ZP_14450068.1| cytidine deaminase [Escherichia coli 576-1]
gi|419947074|ref|ZP_14463436.1| cytidine deaminase [Escherichia coli HM605]
gi|422334398|ref|ZP_16415405.1| cytidine deaminase [Escherichia coli 4_1_47FAA]
gi|422360424|ref|ZP_16441058.1| cytidine deaminase [Escherichia coli MS 110-3]
gi|422362786|ref|ZP_16443338.1| cytidine deaminase [Escherichia coli MS 153-1]
gi|422370296|ref|ZP_16450690.1| cytidine deaminase [Escherichia coli MS 16-3]
gi|422374739|ref|ZP_16455014.1| cytidine deaminase [Escherichia coli MS 60-1]
gi|422382281|ref|ZP_16462442.1| cytidine deaminase [Escherichia coli MS 57-2]
gi|422749424|ref|ZP_16803336.1| cytidine deaminase [Escherichia coli H252]
gi|422755564|ref|ZP_16809388.1| cytidine deaminase [Escherichia coli H263]
gi|422837801|ref|ZP_16885774.1| cytidine deaminase [Escherichia coli H397]
gi|432354083|ref|ZP_19597356.1| cytidine deaminase [Escherichia coli KTE2]
gi|432358488|ref|ZP_19601714.1| cytidine deaminase [Escherichia coli KTE4]
gi|432363222|ref|ZP_19606389.1| cytidine deaminase [Escherichia coli KTE5]
gi|432381884|ref|ZP_19624827.1| cytidine deaminase [Escherichia coli KTE15]
gi|432387696|ref|ZP_19630585.1| cytidine deaminase [Escherichia coli KTE16]
gi|432392657|ref|ZP_19635487.1| cytidine deaminase [Escherichia coli KTE21]
gi|432397972|ref|ZP_19640753.1| cytidine deaminase [Escherichia coli KTE25]
gi|432402435|ref|ZP_19645187.1| cytidine deaminase [Escherichia coli KTE26]
gi|432407200|ref|ZP_19649909.1| cytidine deaminase [Escherichia coli KTE28]
gi|432412357|ref|ZP_19655020.1| cytidine deaminase [Escherichia coli KTE39]
gi|432422491|ref|ZP_19665036.1| cytidine deaminase [Escherichia coli KTE178]
gi|432426699|ref|ZP_19669200.1| cytidine deaminase [Escherichia coli KTE181]
gi|432432432|ref|ZP_19674861.1| cytidine deaminase [Escherichia coli KTE187]
gi|432436870|ref|ZP_19679258.1| cytidine deaminase [Escherichia coli KTE188]
gi|432441640|ref|ZP_19683980.1| cytidine deaminase [Escherichia coli KTE189]
gi|432446754|ref|ZP_19689053.1| cytidine deaminase [Escherichia coli KTE191]
gi|432457251|ref|ZP_19699435.1| cytidine deaminase [Escherichia coli KTE201]
gi|432461165|ref|ZP_19703314.1| cytidine deaminase [Escherichia coli KTE204]
gi|432466237|ref|ZP_19708326.1| cytidine deaminase [Escherichia coli KTE205]
gi|432471510|ref|ZP_19713556.1| cytidine deaminase [Escherichia coli KTE206]
gi|432476372|ref|ZP_19718371.1| cytidine deaminase [Escherichia coli KTE208]
gi|432489820|ref|ZP_19731694.1| cytidine deaminase [Escherichia coli KTE213]
gi|432496251|ref|ZP_19738047.1| cytidine deaminase [Escherichia coli KTE214]
gi|432500631|ref|ZP_19742388.1| cytidine deaminase [Escherichia coli KTE216]
gi|432504973|ref|ZP_19746697.1| cytidine deaminase [Escherichia coli KTE220]
gi|432514446|ref|ZP_19751670.1| cytidine deaminase [Escherichia coli KTE224]
gi|432518214|ref|ZP_19755402.1| cytidine deaminase [Escherichia coli KTE228]
gi|432524342|ref|ZP_19761470.1| cytidine deaminase [Escherichia coli KTE230]
gi|432538335|ref|ZP_19775237.1| cytidine deaminase [Escherichia coli KTE235]
gi|432543751|ref|ZP_19780594.1| cytidine deaminase [Escherichia coli KTE236]
gi|432549241|ref|ZP_19786009.1| cytidine deaminase [Escherichia coli KTE237]
gi|432554233|ref|ZP_19790956.1| cytidine deaminase [Escherichia coli KTE47]
gi|432559394|ref|ZP_19796063.1| cytidine deaminase [Escherichia coli KTE49]
gi|432569224|ref|ZP_19805736.1| cytidine deaminase [Escherichia coli KTE53]
gi|432574224|ref|ZP_19810704.1| cytidine deaminase [Escherichia coli KTE55]
gi|432584400|ref|ZP_19820794.1| cytidine deaminase [Escherichia coli KTE57]
gi|432588472|ref|ZP_19824828.1| cytidine deaminase [Escherichia coli KTE58]
gi|432593409|ref|ZP_19829726.1| cytidine deaminase [Escherichia coli KTE60]
gi|432598131|ref|ZP_19834407.1| cytidine deaminase [Escherichia coli KTE62]
gi|432602704|ref|ZP_19838948.1| cytidine deaminase [Escherichia coli KTE66]
gi|432608031|ref|ZP_19844216.1| cytidine deaminase [Escherichia coli KTE67]
gi|432611953|ref|ZP_19848115.1| cytidine deaminase [Escherichia coli KTE72]
gi|432622394|ref|ZP_19858425.1| cytidine deaminase [Escherichia coli KTE76]
gi|432631930|ref|ZP_19867856.1| cytidine deaminase [Escherichia coli KTE80]
gi|432641644|ref|ZP_19877478.1| cytidine deaminase [Escherichia coli KTE83]
gi|432646715|ref|ZP_19882505.1| cytidine deaminase [Escherichia coli KTE86]
gi|432651699|ref|ZP_19887453.1| cytidine deaminase [Escherichia coli KTE87]
gi|432656298|ref|ZP_19892002.1| cytidine deaminase [Escherichia coli KTE93]
gi|432666539|ref|ZP_19902120.1| cytidine deaminase [Escherichia coli KTE116]
gi|432680752|ref|ZP_19916126.1| cytidine deaminase [Escherichia coli KTE143]
gi|432695006|ref|ZP_19930205.1| cytidine deaminase [Escherichia coli KTE162]
gi|432699575|ref|ZP_19934729.1| cytidine deaminase [Escherichia coli KTE169]
gi|432711195|ref|ZP_19946255.1| cytidine deaminase [Escherichia coli KTE6]
gi|432713922|ref|ZP_19948962.1| cytidine deaminase [Escherichia coli KTE8]
gi|432723596|ref|ZP_19958516.1| cytidine deaminase [Escherichia coli KTE17]
gi|432728183|ref|ZP_19963062.1| cytidine deaminase [Escherichia coli KTE18]
gi|432732878|ref|ZP_19967711.1| cytidine deaminase [Escherichia coli KTE45]
gi|432741877|ref|ZP_19976596.1| cytidine deaminase [Escherichia coli KTE23]
gi|432746186|ref|ZP_19980852.1| cytidine deaminase [Escherichia coli KTE43]
gi|432754959|ref|ZP_19989509.1| cytidine deaminase [Escherichia coli KTE22]
gi|432759964|ref|ZP_19994458.1| cytidine deaminase [Escherichia coli KTE46]
gi|432771106|ref|ZP_20005445.1| cytidine deaminase [Escherichia coli KTE50]
gi|432775228|ref|ZP_20009507.1| cytidine deaminase [Escherichia coli KTE54]
gi|432779084|ref|ZP_20013327.1| cytidine deaminase [Escherichia coli KTE59]
gi|432784092|ref|ZP_20018271.1| cytidine deaminase [Escherichia coli KTE63]
gi|432788031|ref|ZP_20022163.1| cytidine deaminase [Escherichia coli KTE65]
gi|432802361|ref|ZP_20036340.1| cytidine deaminase [Escherichia coli KTE84]
gi|432815882|ref|ZP_20049666.1| cytidine deaminase [Escherichia coli KTE115]
gi|432821480|ref|ZP_20055172.1| cytidine deaminase [Escherichia coli KTE118]
gi|432827612|ref|ZP_20061264.1| cytidine deaminase [Escherichia coli KTE123]
gi|432839828|ref|ZP_20073314.1| cytidine deaminase [Escherichia coli KTE140]
gi|432845114|ref|ZP_20077947.1| cytidine deaminase [Escherichia coli KTE141]
gi|432862738|ref|ZP_20087027.1| cytidine deaminase [Escherichia coli KTE146]
gi|432887125|ref|ZP_20101199.1| cytidine deaminase [Escherichia coli KTE158]
gi|432899163|ref|ZP_20109855.1| cytidine deaminase [Escherichia coli KTE192]
gi|432905403|ref|ZP_20114270.1| cytidine deaminase [Escherichia coli KTE194]
gi|432913323|ref|ZP_20119020.1| cytidine deaminase [Escherichia coli KTE190]
gi|432919608|ref|ZP_20123722.1| cytidine deaminase [Escherichia coli KTE173]
gi|432927510|ref|ZP_20128939.1| cytidine deaminase [Escherichia coli KTE175]
gi|432938495|ref|ZP_20136773.1| cytidine deaminase [Escherichia coli KTE183]
gi|432962312|ref|ZP_20151965.1| cytidine deaminase [Escherichia coli KTE202]
gi|432972347|ref|ZP_20161214.1| cytidine deaminase [Escherichia coli KTE207]
gi|432974292|ref|ZP_20163131.1| cytidine deaminase [Escherichia coli KTE209]
gi|432981573|ref|ZP_20170348.1| cytidine deaminase [Escherichia coli KTE211]
gi|432985903|ref|ZP_20174626.1| cytidine deaminase [Escherichia coli KTE215]
gi|432991184|ref|ZP_20179848.1| cytidine deaminase [Escherichia coli KTE217]
gi|432995880|ref|ZP_20184485.1| cytidine deaminase [Escherichia coli KTE218]
gi|433000449|ref|ZP_20188974.1| cytidine deaminase [Escherichia coli KTE223]
gi|433005602|ref|ZP_20194031.1| cytidine deaminase [Escherichia coli KTE227]
gi|433008185|ref|ZP_20196602.1| cytidine deaminase [Escherichia coli KTE229]
gi|433014409|ref|ZP_20202757.1| cytidine deaminase [Escherichia coli KTE104]
gi|433019212|ref|ZP_20207433.1| cytidine deaminase [Escherichia coli KTE105]
gi|433024027|ref|ZP_20212015.1| cytidine deaminase [Escherichia coli KTE106]
gi|433029120|ref|ZP_20216979.1| cytidine deaminase [Escherichia coli KTE109]
gi|433039144|ref|ZP_20226743.1| cytidine deaminase [Escherichia coli KTE113]
gi|433053752|ref|ZP_20240932.1| cytidine deaminase [Escherichia coli KTE122]
gi|433058663|ref|ZP_20245709.1| cytidine deaminase [Escherichia coli KTE124]
gi|433063606|ref|ZP_20250529.1| cytidine deaminase [Escherichia coli KTE125]
gi|433068457|ref|ZP_20255247.1| cytidine deaminase [Escherichia coli KTE128]
gi|433073336|ref|ZP_20259991.1| cytidine deaminase [Escherichia coli KTE129]
gi|433078320|ref|ZP_20264858.1| cytidine deaminase [Escherichia coli KTE131]
gi|433083102|ref|ZP_20269559.1| cytidine deaminase [Escherichia coli KTE133]
gi|433087824|ref|ZP_20274195.1| cytidine deaminase [Escherichia coli KTE137]
gi|433097015|ref|ZP_20283199.1| cytidine deaminase [Escherichia coli KTE139]
gi|433101690|ref|ZP_20287776.1| cytidine deaminase [Escherichia coli KTE145]
gi|433106437|ref|ZP_20292412.1| cytidine deaminase [Escherichia coli KTE148]
gi|433111395|ref|ZP_20297260.1| cytidine deaminase [Escherichia coli KTE150]
gi|433116078|ref|ZP_20301869.1| cytidine deaminase [Escherichia coli KTE153]
gi|433120742|ref|ZP_20306414.1| cytidine deaminase [Escherichia coli KTE157]
gi|433125728|ref|ZP_20311287.1| cytidine deaminase [Escherichia coli KTE160]
gi|433139797|ref|ZP_20325053.1| cytidine deaminase [Escherichia coli KTE167]
gi|433144734|ref|ZP_20329878.1| cytidine deaminase [Escherichia coli KTE168]
gi|433149714|ref|ZP_20334735.1| cytidine deaminase [Escherichia coli KTE174]
gi|433154264|ref|ZP_20339207.1| cytidine deaminase [Escherichia coli KTE176]
gi|433159186|ref|ZP_20344024.1| cytidine deaminase [Escherichia coli KTE177]
gi|433164019|ref|ZP_20348757.1| cytidine deaminase [Escherichia coli KTE179]
gi|433169124|ref|ZP_20353752.1| cytidine deaminase [Escherichia coli KTE180]
gi|433178999|ref|ZP_20363399.1| cytidine deaminase [Escherichia coli KTE82]
gi|433183808|ref|ZP_20368059.1| cytidine deaminase [Escherichia coli KTE85]
gi|433188927|ref|ZP_20373025.1| cytidine deaminase [Escherichia coli KTE88]
gi|433198779|ref|ZP_20382681.1| cytidine deaminase [Escherichia coli KTE94]
gi|433203761|ref|ZP_20387537.1| cytidine deaminase [Escherichia coli KTE95]
gi|433208319|ref|ZP_20391993.1| cytidine deaminase [Escherichia coli KTE97]
gi|433213055|ref|ZP_20396645.1| cytidine deaminase [Escherichia coli KTE99]
gi|433323620|ref|ZP_20400951.1| cytidine deaminase [Escherichia coli J96]
gi|442607894|ref|ZP_21022654.1| Cytidine deaminase [Escherichia coli Nissle 1917]
gi|450190410|ref|ZP_21890871.1| cytidine deaminase [Escherichia coli SEPT362]
gi|78099197|sp|Q8FFV3.1|CDD_ECOL6 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|122423223|sp|Q1R9T0.1|CDD_ECOUT RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|123049057|sp|Q0TFU8.1|CDD_ECOL5 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167006533|sp|A1AD04.1|CDD_ECOK1 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701672|sp|B7MF55.1|CDD_ECO45 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701677|sp|B7NCH2.1|CDD_ECOLU RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|254813803|sp|B7UFF9.1|CDD_ECO27 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|254813805|sp|B7MXF5.1|CDD_ECO81 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|26108928|gb|AAN81131.1|AE016763_90 Cytidine deaminase [Escherichia coli CFT073]
gi|91073003|gb|ABE07884.1| cytidine deaminase [Escherichia coli UTI89]
gi|110343944|gb|ABG70181.1| cytidine deaminase [Escherichia coli 536]
gi|115513469|gb|ABJ01544.1| cytidine deaminase [Escherichia coli APEC O1]
gi|190909585|gb|EDV69170.1| cytidine deaminase [Escherichia coli F11]
gi|215265436|emb|CAS09837.1| cytidine/deoxycytidine deaminase [Escherichia coli O127:H6 str.
E2348/69]
gi|218365830|emb|CAR03571.1| cytidine/deoxycytidine deaminase [Escherichia coli S88]
gi|218427856|emb|CAR08771.2| cytidine/deoxycytidine deaminase [Escherichia coli ED1a]
gi|218432768|emb|CAR13662.1| cytidine/deoxycytidine deaminase [Escherichia coli UMN026]
gi|222033904|emb|CAP76645.1| Cytidine deaminase [Escherichia coli LF82]
gi|226900974|gb|EEH87233.1| cytidine deaminase [Escherichia sp. 3_2_53FAA]
gi|227835548|gb|EEJ46014.1| cytidine deaminase [Escherichia coli 83972]
gi|281179235|dbj|BAI55565.1| cytidine/deoxycytidine deaminase [Escherichia coli SE15]
gi|284922128|emb|CBG35209.1| cytidine deaminase [Escherichia coli 042]
gi|291427819|gb|EFF00846.1| cytidine deaminase [Escherichia coli FVEC1412]
gi|291433074|gb|EFF06053.1| cytidine deaminase [Escherichia coli B185]
gi|294489469|gb|ADE88225.1| cytidine deaminase [Escherichia coli IHE3034]
gi|298278734|gb|EFI20248.1| cytidine deaminase [Escherichia coli FVEC1302]
gi|300299255|gb|EFJ55640.1| cytidine deaminase [Escherichia coli MS 185-1]
gi|300307555|gb|EFJ62075.1| cytidine deaminase [Escherichia coli MS 200-1]
gi|300358516|gb|EFJ74386.1| cytidine deaminase [Escherichia coli MS 198-1]
gi|300408657|gb|EFJ92195.1| cytidine deaminase [Escherichia coli MS 45-1]
gi|300459646|gb|EFK23139.1| cytidine deaminase [Escherichia coli MS 21-1]
gi|305852136|gb|EFM52588.1| cytidine deaminase [Escherichia coli NC101]
gi|307554212|gb|ADN46987.1| cytidine/deoxycytidine deaminase [Escherichia coli ABU 83972]
gi|307626316|gb|ADN70620.1| cytidine deaminase [Escherichia coli UM146]
gi|312287633|gb|EFR15538.1| cytidine deaminase [Escherichia coli 2362-75]
gi|312946761|gb|ADR27588.1| cytidine deaminase [Escherichia coli O83:H1 str. NRG 857C]
gi|315285786|gb|EFU45226.1| cytidine deaminase [Escherichia coli MS 110-3]
gi|315294492|gb|EFU53840.1| cytidine deaminase [Escherichia coli MS 153-1]
gi|315297993|gb|EFU57263.1| cytidine deaminase [Escherichia coli MS 16-3]
gi|320196012|gb|EFW70636.1| Cytidine deaminase [Escherichia coli WV_060327]
gi|323951939|gb|EGB47813.1| cytidine deaminase [Escherichia coli H252]
gi|323955908|gb|EGB51661.1| cytidine deaminase [Escherichia coli H263]
gi|324006550|gb|EGB75769.1| cytidine deaminase [Escherichia coli MS 57-2]
gi|324013976|gb|EGB83195.1| cytidine deaminase [Escherichia coli MS 60-1]
gi|330911976|gb|EGH40486.1| cytidine deaminase [Escherichia coli AA86]
gi|331043518|gb|EGI15656.1| cytidine deaminase [Escherichia coli M605]
gi|331056470|gb|EGI28479.1| cytidine deaminase [Escherichia coli TA206]
gi|331059444|gb|EGI31421.1| cytidine deaminase [Escherichia coli TA143]
gi|331078772|gb|EGI49974.1| cytidine deaminase [Escherichia coli H299]
gi|333970261|gb|AEG37066.1| Cytidine deaminase [Escherichia coli NA114]
gi|345336765|gb|EGW69199.1| cytidine deaminase [Escherichia coli STEC_C165-02]
gi|355351177|gb|EHG00369.1| cytidine deaminase [Escherichia coli cloneA_i1]
gi|355420832|gb|AER85029.1| cytidine deaminase [Escherichia coli str. 'clone D i2']
gi|355425752|gb|AER89948.1| cytidine deaminase [Escherichia coli str. 'clone D i14']
gi|371610710|gb|EHN99238.1| cytidine deaminase [Escherichia coli H397]
gi|373244624|gb|EHP64105.1| cytidine deaminase [Escherichia coli 4_1_47FAA]
gi|377843432|gb|EHU08472.1| cytidine deaminase [Escherichia coli DEC1A]
gi|377843896|gb|EHU08933.1| cytidine deaminase [Escherichia coli DEC1C]
gi|377847562|gb|EHU12560.1| cytidine deaminase [Escherichia coli DEC1B]
gi|377857397|gb|EHU22248.1| cytidine deaminase [Escherichia coli DEC1D]
gi|377860116|gb|EHU24942.1| cytidine deaminase [Escherichia coli DEC1E]
gi|377863346|gb|EHU28151.1| cytidine deaminase [Escherichia coli DEC2A]
gi|377873812|gb|EHU38443.1| cytidine deaminase [Escherichia coli DEC2B]
gi|377877785|gb|EHU42374.1| cytidine deaminase [Escherichia coli DEC2C]
gi|377879733|gb|EHU44305.1| cytidine deaminase [Escherichia coli DEC2D]
gi|377890330|gb|EHU54787.1| cytidine deaminase [Escherichia coli DEC2E]
gi|380347726|gb|EIA36012.1| cytidine deaminase [Escherichia coli SCI-07]
gi|386249804|gb|EII95973.1| cytidine deaminase [Escherichia coli TW07793]
gi|388386670|gb|EIL48310.1| cytidine deaminase [Escherichia coli KD1]
gi|388411511|gb|EIL71680.1| cytidine deaminase [Escherichia coli HM605]
gi|388415726|gb|EIL75646.1| cytidine deaminase [Escherichia coli 576-1]
gi|430875256|gb|ELB98798.1| cytidine deaminase [Escherichia coli KTE2]
gi|430877143|gb|ELC00599.1| cytidine deaminase [Escherichia coli KTE4]
gi|430886441|gb|ELC09296.1| cytidine deaminase [Escherichia coli KTE5]
gi|430906344|gb|ELC27944.1| cytidine deaminase [Escherichia coli KTE16]
gi|430907359|gb|ELC28857.1| cytidine deaminase [Escherichia coli KTE15]
gi|430916076|gb|ELC37154.1| cytidine deaminase [Escherichia coli KTE25]
gi|430917813|gb|ELC38852.1| cytidine deaminase [Escherichia coli KTE21]
gi|430924906|gb|ELC45579.1| cytidine deaminase [Escherichia coli KTE26]
gi|430929959|gb|ELC50468.1| cytidine deaminase [Escherichia coli KTE28]
gi|430934764|gb|ELC55111.1| cytidine deaminase [Escherichia coli KTE39]
gi|430944103|gb|ELC64202.1| cytidine deaminase [Escherichia coli KTE178]
gi|430952857|gb|ELC71771.1| cytidine deaminase [Escherichia coli KTE187]
gi|430955631|gb|ELC74413.1| cytidine deaminase [Escherichia coli KTE181]
gi|430962201|gb|ELC80058.1| cytidine deaminase [Escherichia coli KTE188]
gi|430966094|gb|ELC83502.1| cytidine deaminase [Escherichia coli KTE189]
gi|430973027|gb|ELC89995.1| cytidine deaminase [Escherichia coli KTE191]
gi|430981985|gb|ELC98704.1| cytidine deaminase [Escherichia coli KTE201]
gi|430988855|gb|ELD05324.1| cytidine deaminase [Escherichia coli KTE204]
gi|430993821|gb|ELD10165.1| cytidine deaminase [Escherichia coli KTE205]
gi|430997899|gb|ELD14148.1| cytidine deaminase [Escherichia coli KTE206]
gi|431005540|gb|ELD20561.1| cytidine deaminase [Escherichia coli KTE208]
gi|431020437|gb|ELD33782.1| cytidine deaminase [Escherichia coli KTE213]
gi|431023509|gb|ELD36704.1| cytidine deaminase [Escherichia coli KTE214]
gi|431028208|gb|ELD41252.1| cytidine deaminase [Escherichia coli KTE216]
gi|431038067|gb|ELD49036.1| cytidine deaminase [Escherichia coli KTE220]
gi|431041842|gb|ELD52337.1| cytidine deaminase [Escherichia coli KTE224]
gi|431050836|gb|ELD60512.1| cytidine deaminase [Escherichia coli KTE228]
gi|431051458|gb|ELD61121.1| cytidine deaminase [Escherichia coli KTE230]
gi|431069224|gb|ELD77553.1| cytidine deaminase [Escherichia coli KTE235]
gi|431074161|gb|ELD81725.1| cytidine deaminase [Escherichia coli KTE236]
gi|431079519|gb|ELD86473.1| cytidine deaminase [Escherichia coli KTE237]
gi|431084038|gb|ELD90209.1| cytidine deaminase [Escherichia coli KTE47]
gi|431090614|gb|ELD96365.1| cytidine deaminase [Escherichia coli KTE49]
gi|431099938|gb|ELE04954.1| cytidine deaminase [Escherichia coli KTE53]
gi|431107822|gb|ELE11986.1| cytidine deaminase [Escherichia coli KTE55]
gi|431115759|gb|ELE19253.1| cytidine deaminase [Escherichia coli KTE57]
gi|431120805|gb|ELE23803.1| cytidine deaminase [Escherichia coli KTE58]
gi|431127509|gb|ELE29809.1| cytidine deaminase [Escherichia coli KTE60]
gi|431130998|gb|ELE33081.1| cytidine deaminase [Escherichia coli KTE62]
gi|431137917|gb|ELE39757.1| cytidine deaminase [Escherichia coli KTE67]
gi|431141278|gb|ELE43043.1| cytidine deaminase [Escherichia coli KTE66]
gi|431148127|gb|ELE49418.1| cytidine deaminase [Escherichia coli KTE72]
gi|431159194|gb|ELE59751.1| cytidine deaminase [Escherichia coli KTE76]
gi|431170130|gb|ELE70324.1| cytidine deaminase [Escherichia coli KTE80]
gi|431180752|gb|ELE80639.1| cytidine deaminase [Escherichia coli KTE86]
gi|431181527|gb|ELE81389.1| cytidine deaminase [Escherichia coli KTE83]
gi|431190146|gb|ELE89546.1| cytidine deaminase [Escherichia coli KTE87]
gi|431190768|gb|ELE90154.1| cytidine deaminase [Escherichia coli KTE93]
gi|431200833|gb|ELE99551.1| cytidine deaminase [Escherichia coli KTE116]
gi|431220149|gb|ELF17529.1| cytidine deaminase [Escherichia coli KTE143]
gi|431233588|gb|ELF29175.1| cytidine deaminase [Escherichia coli KTE162]
gi|431243324|gb|ELF37711.1| cytidine deaminase [Escherichia coli KTE169]
gi|431248875|gb|ELF43050.1| cytidine deaminase [Escherichia coli KTE6]
gi|431256699|gb|ELF49634.1| cytidine deaminase [Escherichia coli KTE8]
gi|431266150|gb|ELF57712.1| cytidine deaminase [Escherichia coli KTE17]
gi|431273872|gb|ELF64946.1| cytidine deaminase [Escherichia coli KTE18]
gi|431276065|gb|ELF67092.1| cytidine deaminase [Escherichia coli KTE45]
gi|431283568|gb|ELF74427.1| cytidine deaminase [Escherichia coli KTE23]
gi|431291225|gb|ELF81738.1| cytidine deaminase [Escherichia coli KTE43]
gi|431302168|gb|ELF91356.1| cytidine deaminase [Escherichia coli KTE22]
gi|431307618|gb|ELF95908.1| cytidine deaminase [Escherichia coli KTE46]
gi|431314803|gb|ELG02735.1| cytidine deaminase [Escherichia coli KTE50]
gi|431318267|gb|ELG06033.1| cytidine deaminase [Escherichia coli KTE54]
gi|431327237|gb|ELG14582.1| cytidine deaminase [Escherichia coli KTE59]
gi|431328515|gb|ELG15819.1| cytidine deaminase [Escherichia coli KTE63]
gi|431337748|gb|ELG24836.1| cytidine deaminase [Escherichia coli KTE65]
gi|431348150|gb|ELG35008.1| cytidine deaminase [Escherichia coli KTE84]
gi|431364106|gb|ELG50650.1| cytidine deaminase [Escherichia coli KTE115]
gi|431368327|gb|ELG54795.1| cytidine deaminase [Escherichia coli KTE118]
gi|431372861|gb|ELG58523.1| cytidine deaminase [Escherichia coli KTE123]
gi|431389001|gb|ELG72716.1| cytidine deaminase [Escherichia coli KTE140]
gi|431394536|gb|ELG78069.1| cytidine deaminase [Escherichia coli KTE141]
gi|431404777|gb|ELG88023.1| cytidine deaminase [Escherichia coli KTE146]
gi|431416123|gb|ELG98610.1| cytidine deaminase [Escherichia coli KTE158]
gi|431426815|gb|ELH08859.1| cytidine deaminase [Escherichia coli KTE192]
gi|431432638|gb|ELH14315.1| cytidine deaminase [Escherichia coli KTE194]
gi|431439623|gb|ELH20956.1| cytidine deaminase [Escherichia coli KTE190]
gi|431443652|gb|ELH24678.1| cytidine deaminase [Escherichia coli KTE173]
gi|431444033|gb|ELH25057.1| cytidine deaminase [Escherichia coli KTE175]
gi|431463230|gb|ELH43423.1| cytidine deaminase [Escherichia coli KTE183]
gi|431474103|gb|ELH53925.1| cytidine deaminase [Escherichia coli KTE202]
gi|431481849|gb|ELH61556.1| cytidine deaminase [Escherichia coli KTE207]
gi|431489153|gb|ELH68781.1| cytidine deaminase [Escherichia coli KTE209]
gi|431490882|gb|ELH70489.1| cytidine deaminase [Escherichia coli KTE211]
gi|431495266|gb|ELH74852.1| cytidine deaminase [Escherichia coli KTE217]
gi|431500140|gb|ELH79156.1| cytidine deaminase [Escherichia coli KTE215]
gi|431505440|gb|ELH84046.1| cytidine deaminase [Escherichia coli KTE218]
gi|431508435|gb|ELH86707.1| cytidine deaminase [Escherichia coli KTE223]
gi|431514589|gb|ELH92430.1| cytidine deaminase [Escherichia coli KTE227]
gi|431523515|gb|ELI00652.1| cytidine deaminase [Escherichia coli KTE229]
gi|431530507|gb|ELI07186.1| cytidine deaminase [Escherichia coli KTE104]
gi|431531113|gb|ELI07782.1| cytidine deaminase [Escherichia coli KTE105]
gi|431535720|gb|ELI12059.1| cytidine deaminase [Escherichia coli KTE106]
gi|431542860|gb|ELI17856.1| cytidine deaminase [Escherichia coli KTE109]
gi|431551244|gb|ELI25230.1| cytidine deaminase [Escherichia coli KTE113]
gi|431568918|gb|ELI41880.1| cytidine deaminase [Escherichia coli KTE124]
gi|431570152|gb|ELI43078.1| cytidine deaminase [Escherichia coli KTE122]
gi|431581600|gb|ELI54047.1| cytidine deaminase [Escherichia coli KTE125]
gi|431584084|gb|ELI56071.1| cytidine deaminase [Escherichia coli KTE128]
gi|431588047|gb|ELI59395.1| cytidine deaminase [Escherichia coli KTE129]
gi|431596550|gb|ELI66502.1| cytidine deaminase [Escherichia coli KTE131]
gi|431601994|gb|ELI71503.1| cytidine deaminase [Escherichia coli KTE133]
gi|431604335|gb|ELI73744.1| cytidine deaminase [Escherichia coli KTE137]
gi|431615363|gb|ELI84492.1| cytidine deaminase [Escherichia coli KTE139]
gi|431619284|gb|ELI88208.1| cytidine deaminase [Escherichia coli KTE145]
gi|431627144|gb|ELI95555.1| cytidine deaminase [Escherichia coli KTE148]
gi|431628699|gb|ELI97075.1| cytidine deaminase [Escherichia coli KTE150]
gi|431633840|gb|ELJ02102.1| cytidine deaminase [Escherichia coli KTE153]
gi|431642343|gb|ELJ10066.1| cytidine deaminase [Escherichia coli KTE157]
gi|431644962|gb|ELJ12615.1| cytidine deaminase [Escherichia coli KTE160]
gi|431660110|gb|ELJ26998.1| cytidine deaminase [Escherichia coli KTE167]
gi|431661429|gb|ELJ28242.1| cytidine deaminase [Escherichia coli KTE168]
gi|431670383|gb|ELJ36736.1| cytidine deaminase [Escherichia coli KTE174]
gi|431674154|gb|ELJ40337.1| cytidine deaminase [Escherichia coli KTE176]
gi|431677825|gb|ELJ43838.1| cytidine deaminase [Escherichia coli KTE177]
gi|431687324|gb|ELJ52875.1| cytidine deaminase [Escherichia coli KTE179]
gi|431687976|gb|ELJ53517.1| cytidine deaminase [Escherichia coli KTE180]
gi|431701364|gb|ELJ66283.1| cytidine deaminase [Escherichia coli KTE82]
gi|431705633|gb|ELJ70223.1| cytidine deaminase [Escherichia coli KTE88]
gi|431706370|gb|ELJ70941.1| cytidine deaminase [Escherichia coli KTE85]
gi|431721310|gb|ELJ85305.1| cytidine deaminase [Escherichia coli KTE95]
gi|431721483|gb|ELJ85477.1| cytidine deaminase [Escherichia coli KTE94]
gi|431729604|gb|ELJ93223.1| cytidine deaminase [Escherichia coli KTE97]
gi|431734080|gb|ELJ97481.1| cytidine deaminase [Escherichia coli KTE99]
gi|432347718|gb|ELL42175.1| cytidine deaminase [Escherichia coli J96]
gi|441710499|emb|CCQ08631.1| Cytidine deaminase [Escherichia coli Nissle 1917]
gi|449320692|gb|EMD10719.1| cytidine deaminase [Escherichia coli SEPT362]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|401764463|ref|YP_006579470.1| cytidine deaminase [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400175997|gb|AFP70846.1| cytidine deaminase [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 128/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKALSAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L LPD FGP DL D+ LL
Sbjct: 128 PCGHCRQFMNELNSGLQLR-----INLPGRAPHTLGDYLPDAFGPKDL---DIKTLLMDE 179
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
Q+ F L + E AA+ AANKSH PYS PSGVA+ +G I+ GSY
Sbjct: 180 QD-HGFALSGDDLSE----------AAIRAANKSHTPYSNAPSGVALQCRDGRIFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAPLIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|415813253|ref|ZP_11505062.1| cytidine deaminase [Escherichia coli LT-68]
gi|417618736|ref|ZP_12269150.1| cytidine deaminase [Escherichia coli G58-1]
gi|323171794|gb|EFZ57438.1| cytidine deaminase [Escherichia coli LT-68]
gi|345375450|gb|EGX07397.1| cytidine deaminase [Escherichia coli G58-1]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|16130081|ref|NP_416648.1| cytidine/deoxycytidine deaminase [Escherichia coli str. K-12
substr. MG1655]
gi|24113533|ref|NP_708043.1| cytidine deaminase [Shigella flexneri 2a str. 301]
gi|30063587|ref|NP_837758.1| cytidine deaminase [Shigella flexneri 2a str. 2457T]
gi|74312666|ref|YP_311085.1| cytidine deaminase [Shigella sonnei Ss046]
gi|82543536|ref|YP_407483.1| cytidine deaminase [Shigella boydii Sb227]
gi|110806120|ref|YP_689640.1| cytidine deaminase [Shigella flexneri 5 str. 8401]
gi|157161623|ref|YP_001458941.1| cytidine deaminase [Escherichia coli HS]
gi|170081766|ref|YP_001731086.1| cytidine deaminase [Escherichia coli str. K-12 substr. DH10B]
gi|170680352|ref|YP_001744337.1| cytidine deaminase [Escherichia coli SMS-3-5]
gi|187732217|ref|YP_001879528.1| cytidine deaminase [Shigella boydii CDC 3083-94]
gi|188493466|ref|ZP_03000736.1| cytidine deaminase [Escherichia coli 53638]
gi|193071075|ref|ZP_03052001.1| cytidine deaminase [Escherichia coli E110019]
gi|194435985|ref|ZP_03068087.1| cytidine deaminase [Escherichia coli 101-1]
gi|209919601|ref|YP_002293685.1| cytidine deaminase [Escherichia coli SE11]
gi|218554708|ref|YP_002387621.1| cytidine deaminase [Escherichia coli IAI1]
gi|218695754|ref|YP_002403421.1| cytidine deaminase [Escherichia coli 55989]
gi|238901325|ref|YP_002927121.1| cytidine deaminase [Escherichia coli BW2952]
gi|251785512|ref|YP_002999816.1| cytidine deaminase [Escherichia coli BL21(DE3)]
gi|253772930|ref|YP_003035761.1| cytidine deaminase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162157|ref|YP_003045265.1| cytidine deaminase [Escherichia coli B str. REL606]
gi|254288919|ref|YP_003054667.1| cytidine deaminase [Escherichia coli BL21(DE3)]
gi|260856116|ref|YP_003230007.1| cytidine deaminase [Escherichia coli O26:H11 str. 11368]
gi|260868845|ref|YP_003235247.1| cytidine/deoxycytidine deaminase [Escherichia coli O111:H- str.
11128]
gi|293446493|ref|ZP_06662915.1| cytidine deaminase [Escherichia coli B088]
gi|300820193|ref|ZP_07100353.1| cytidine deaminase [Escherichia coli MS 107-1]
gi|300918783|ref|ZP_07135352.1| cytidine deaminase [Escherichia coli MS 115-1]
gi|300930372|ref|ZP_07145781.1| cytidine deaminase [Escherichia coli MS 187-1]
gi|300950098|ref|ZP_07164045.1| cytidine deaminase [Escherichia coli MS 116-1]
gi|300955835|ref|ZP_07168176.1| cytidine deaminase [Escherichia coli MS 175-1]
gi|301644160|ref|ZP_07244168.1| cytidine deaminase [Escherichia coli MS 146-1]
gi|307311278|ref|ZP_07590922.1| cytidine deaminase [Escherichia coli W]
gi|312973608|ref|ZP_07787780.1| cytidine deaminase [Escherichia coli 1827-70]
gi|331642768|ref|ZP_08343903.1| cytidine deaminase [Escherichia coli H736]
gi|378712406|ref|YP_005277299.1| cytidine deaminase [Escherichia coli KO11FL]
gi|383179102|ref|YP_005457107.1| cytidine deaminase [Shigella sonnei 53G]
gi|384543814|ref|YP_005727877.1| Cytidine deaminase [Shigella flexneri 2002017]
gi|386281214|ref|ZP_10058876.1| cytidine deaminase [Escherichia sp. 4_1_40B]
gi|386595074|ref|YP_006091474.1| cytidine deaminase [Escherichia coli DH1]
gi|386609535|ref|YP_006125021.1| cytidine deaminase [Escherichia coli W]
gi|386614752|ref|YP_006134418.1| cytidine deaminase [Escherichia coli UMNK88]
gi|386700871|ref|YP_006164708.1| cytidine deaminase [Escherichia coli KO11FL]
gi|386705406|ref|YP_006169253.1| Cytidine deaminase [Escherichia coli P12b]
gi|386710017|ref|YP_006173738.1| cytidine deaminase [Escherichia coli W]
gi|387612720|ref|YP_006115836.1| cytidine deaminase [Escherichia coli ETEC H10407]
gi|387621853|ref|YP_006129480.1| cytidine deaminase [Escherichia coli DH1]
gi|388478192|ref|YP_490382.1| cytidine/deoxycytidine deaminase [Escherichia coli str. K-12
substr. W3110]
gi|404375494|ref|ZP_10980678.1| cytidine deaminase [Escherichia sp. 1_1_43]
gi|407470035|ref|YP_006783522.1| cytidine deaminase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481302|ref|YP_006778451.1| cytidine deaminase [Escherichia coli O104:H4 str. 2011C-3493]
gi|410481849|ref|YP_006769395.1| cytidine deaminase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414576737|ref|ZP_11433919.1| cytidine deaminase [Shigella sonnei 3233-85]
gi|415778179|ref|ZP_11489225.1| cytidine deaminase [Escherichia coli 3431]
gi|415823006|ref|ZP_11511525.1| cytidine deaminase [Escherichia coli OK1180]
gi|415829161|ref|ZP_11515544.1| cytidine deaminase [Escherichia coli OK1357]
gi|415844606|ref|ZP_11524348.1| cytidine deaminase [Shigella sonnei 53G]
gi|415853272|ref|ZP_11529281.1| cytidine deaminase [Shigella flexneri 2a str. 2457T]
gi|415875996|ref|ZP_11542569.1| cytidine deaminase [Escherichia coli MS 79-10]
gi|416294009|ref|ZP_11650630.1| Cytidine deaminase [Shigella flexneri CDC 796-83]
gi|416343706|ref|ZP_11677606.1| Cytidine deaminase [Escherichia coli EC4100B]
gi|417122588|ref|ZP_11971846.1| cytidine deaminase [Escherichia coli 97.0246]
gi|417131984|ref|ZP_11976769.1| cytidine deaminase [Escherichia coli 5.0588]
gi|417139066|ref|ZP_11982593.1| cytidine deaminase [Escherichia coli 97.0259]
gi|417154225|ref|ZP_11992354.1| cytidine deaminase [Escherichia coli 96.0497]
gi|417159784|ref|ZP_11996812.1| cytidine deaminase [Escherichia coli 99.0741]
gi|417191989|ref|ZP_12014089.1| cytidine deaminase [Escherichia coli 4.0522]
gi|417213598|ref|ZP_12022639.1| cytidine deaminase [Escherichia coli JB1-95]
gi|417232299|ref|ZP_12033697.1| cytidine deaminase [Escherichia coli 5.0959]
gi|417237663|ref|ZP_12035394.1| cytidine deaminase [Escherichia coli 9.0111]
gi|417259719|ref|ZP_12047242.1| cytidine deaminase [Escherichia coli 2.3916]
gi|417272700|ref|ZP_12060049.1| cytidine deaminase [Escherichia coli 2.4168]
gi|417276658|ref|ZP_12063985.1| cytidine deaminase [Escherichia coli 3.2303]
gi|417291897|ref|ZP_12079178.1| cytidine deaminase [Escherichia coli B41]
gi|417298476|ref|ZP_12085715.1| cytidine deaminase [Escherichia coli 900105 (10e)]
gi|417308604|ref|ZP_12095448.1| Cytidine deaminase [Escherichia coli PCN033]
gi|417581654|ref|ZP_12232456.1| cytidine deaminase [Escherichia coli STEC_B2F1]
gi|417592399|ref|ZP_12243096.1| cytidine deaminase [Escherichia coli 2534-86]
gi|417597457|ref|ZP_12248099.1| cytidine deaminase [Escherichia coli 3030-1]
gi|417608772|ref|ZP_12259275.1| cytidine deaminase [Escherichia coli STEC_DG131-3]
gi|417613605|ref|ZP_12264063.1| cytidine deaminase [Escherichia coli STEC_EH250]
gi|417629387|ref|ZP_12279625.1| cytidine deaminase [Escherichia coli STEC_MHI813]
gi|417635069|ref|ZP_12285282.1| cytidine deaminase [Escherichia coli STEC_S1191]
gi|417667562|ref|ZP_12317107.1| cytidine deaminase [Escherichia coli STEC_O31]
gi|417680971|ref|ZP_12330350.1| cytidine deaminase [Shigella boydii 3594-74]
gi|417702826|ref|ZP_12351937.1| cytidine deaminase [Shigella flexneri K-218]
gi|417708178|ref|ZP_12357211.1| cytidine deaminase [Shigella flexneri VA-6]
gi|417713171|ref|ZP_12362138.1| cytidine deaminase [Shigella flexneri K-272]
gi|417718010|ref|ZP_12366911.1| cytidine deaminase [Shigella flexneri K-227]
gi|417723835|ref|ZP_12372640.1| cytidine deaminase [Shigella flexneri K-304]
gi|417729056|ref|ZP_12377754.1| cytidine deaminase [Shigella flexneri K-671]
gi|417734399|ref|ZP_12383050.1| cytidine deaminase [Shigella flexneri 2747-71]
gi|417738964|ref|ZP_12387544.1| cytidine deaminase [Shigella flexneri 4343-70]
gi|417805708|ref|ZP_12452657.1| cytidine deaminase [Escherichia coli O104:H4 str. LB226692]
gi|417828529|ref|ZP_12475082.1| cytidine deaminase [Shigella flexneri J1713]
gi|417833451|ref|ZP_12479899.1| cytidine deaminase [Escherichia coli O104:H4 str. 01-09591]
gi|417863531|ref|ZP_12508579.1| hypothetical protein C22711_0464 [Escherichia coli O104:H4 str.
C227-11]
gi|417944614|ref|ZP_12587855.1| cytidine deaminase [Escherichia coli XH140A]
gi|417976943|ref|ZP_12617732.1| cytidine deaminase [Escherichia coli XH001]
gi|418041970|ref|ZP_12680181.1| cytidine deaminase [Escherichia coli W26]
gi|418257075|ref|ZP_12880784.1| cytidine deaminase [Shigella flexneri 6603-63]
gi|418266497|ref|ZP_12886003.1| cytidine deaminase [Shigella sonnei str. Moseley]
gi|418303511|ref|ZP_12915305.1| cytidine deaminase [Escherichia coli UMNF18]
gi|418957497|ref|ZP_13509421.1| cytidine deaminase [Escherichia coli J53]
gi|419143068|ref|ZP_13687808.1| cytidine deaminase [Escherichia coli DEC6A]
gi|419149308|ref|ZP_13693961.1| cytidine deaminase [Escherichia coli DEC6B]
gi|419154520|ref|ZP_13699083.1| cytidine deaminase [Escherichia coli DEC6C]
gi|419159812|ref|ZP_13704317.1| cytidine deaminase [Escherichia coli DEC6D]
gi|419164940|ref|ZP_13709397.1| cytidine deaminase [Escherichia coli DEC6E]
gi|419175809|ref|ZP_13719647.1| cytidine deaminase [Escherichia coli DEC7B]
gi|419197601|ref|ZP_13740989.1| cytidine deaminase [Escherichia coli DEC8A]
gi|419204054|ref|ZP_13747237.1| cytidine deaminase [Escherichia coli DEC8B]
gi|419216191|ref|ZP_13759193.1| cytidine deaminase [Escherichia coli DEC8D]
gi|419222129|ref|ZP_13765052.1| cytidine deaminase [Escherichia coli DEC8E]
gi|419227330|ref|ZP_13770188.1| cytidine deaminase [Escherichia coli DEC9A]
gi|419232938|ref|ZP_13775715.1| cytidine deaminase [Escherichia coli DEC9B]
gi|419238394|ref|ZP_13781115.1| cytidine deaminase [Escherichia coli DEC9C]
gi|419243861|ref|ZP_13786500.1| cytidine deaminase [Escherichia coli DEC9D]
gi|419249687|ref|ZP_13792271.1| cytidine deaminase [Escherichia coli DEC9E]
gi|419255503|ref|ZP_13798022.1| cytidine deaminase [Escherichia coli DEC10A]
gi|419261703|ref|ZP_13804125.1| cytidine deaminase [Escherichia coli DEC10B]
gi|419267761|ref|ZP_13810116.1| cytidine deaminase [Escherichia coli DEC10C]
gi|419273234|ref|ZP_13815533.1| cytidine deaminase [Escherichia coli DEC10D]
gi|419278598|ref|ZP_13820847.1| cytidine deaminase [Escherichia coli DEC10E]
gi|419284744|ref|ZP_13826920.1| cytidine deaminase [Escherichia coli DEC10F]
gi|419345808|ref|ZP_13887183.1| cytidine deaminase [Escherichia coli DEC13A]
gi|419350221|ref|ZP_13891559.1| cytidine deaminase [Escherichia coli DEC13B]
gi|419355633|ref|ZP_13896891.1| cytidine deaminase [Escherichia coli DEC13C]
gi|419360726|ref|ZP_13901944.1| cytidine deaminase [Escherichia coli DEC13D]
gi|419365883|ref|ZP_13907045.1| cytidine deaminase [Escherichia coli DEC13E]
gi|419376045|ref|ZP_13917070.1| cytidine deaminase [Escherichia coli DEC14B]
gi|419386692|ref|ZP_13927570.1| cytidine deaminase [Escherichia coli DEC14D]
gi|419392237|ref|ZP_13933049.1| cytidine deaminase [Escherichia coli DEC15A]
gi|419397277|ref|ZP_13938045.1| cytidine deaminase [Escherichia coli DEC15B]
gi|419402619|ref|ZP_13943343.1| cytidine deaminase [Escherichia coli DEC15C]
gi|419407738|ref|ZP_13948427.1| cytidine deaminase [Escherichia coli DEC15D]
gi|419413321|ref|ZP_13953973.1| cytidine deaminase [Escherichia coli DEC15E]
gi|419803762|ref|ZP_14328929.1| cytidine deaminase [Escherichia coli AI27]
gi|419809255|ref|ZP_14334141.1| cytidine deaminase [Escherichia coli O32:H37 str. P4]
gi|419862642|ref|ZP_14385236.1| cytidine deaminase [Escherichia coli O103:H25 str. CVM9340]
gi|419892225|ref|ZP_14412255.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9570]
gi|419895736|ref|ZP_14415521.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9574]
gi|419902380|ref|ZP_14421606.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM9942]
gi|419906523|ref|ZP_14425424.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10026]
gi|419930847|ref|ZP_14448439.1| cytidine deaminase [Escherichia coli 541-1]
gi|419938795|ref|ZP_14455606.1| cytidine deaminase [Escherichia coli 75]
gi|419950449|ref|ZP_14466662.1| cytidine deaminase [Escherichia coli CUMT8]
gi|420089804|ref|ZP_14601584.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9602]
gi|420095665|ref|ZP_14607145.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9634]
gi|420117939|ref|ZP_14627283.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10021]
gi|420121042|ref|ZP_14630185.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10030]
gi|420128132|ref|ZP_14636693.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10224]
gi|420134852|ref|ZP_14642952.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM9952]
gi|420321016|ref|ZP_14822846.1| cytidine deaminase [Shigella flexneri 2850-71]
gi|420324690|ref|ZP_14826470.1| cytidine deaminase [Shigella flexneri CCH060]
gi|420332056|ref|ZP_14833712.1| cytidine deaminase [Shigella flexneri K-1770]
gi|420341012|ref|ZP_14842521.1| cytidine deaminase [Shigella flexneri K-404]
gi|420351711|ref|ZP_14852894.1| cytidine deaminase [Shigella boydii 4444-74]
gi|420359204|ref|ZP_14860178.1| cytidine deaminase [Shigella sonnei 3226-85]
gi|420363864|ref|ZP_14864748.1| cytidine deaminase [Shigella sonnei 4822-66]
gi|421683124|ref|ZP_16122921.1| cytidine deaminase [Shigella flexneri 1485-80]
gi|421775769|ref|ZP_16212377.1| cytidine deaminase [Escherichia coli AD30]
gi|422351285|ref|ZP_16432107.1| cytidine deaminase [Escherichia coli MS 117-3]
gi|422772009|ref|ZP_16825698.1| cytidine deaminase [Escherichia coli E482]
gi|422786763|ref|ZP_16839502.1| cytidine deaminase [Escherichia coli H489]
gi|422790603|ref|ZP_16843307.1| cytidine deaminase [Escherichia coli TA007]
gi|422819680|ref|ZP_16867891.1| cytidine deaminase [Escherichia coli M919]
gi|422830170|ref|ZP_16878331.1| cytidine deaminase [Escherichia coli B093]
gi|422834058|ref|ZP_16882122.1| cytidine deaminase [Escherichia coli E101]
gi|422988269|ref|ZP_16979042.1| cytidine deaminase [Escherichia coli O104:H4 str. C227-11]
gi|422995160|ref|ZP_16985924.1| cytidine deaminase [Escherichia coli O104:H4 str. C236-11]
gi|423000235|ref|ZP_16990989.1| cytidine deaminase [Escherichia coli O104:H4 str. 09-7901]
gi|423003904|ref|ZP_16994650.1| cytidine deaminase [Escherichia coli O104:H4 str. 04-8351]
gi|423010477|ref|ZP_17001211.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-3677]
gi|423019704|ref|ZP_17010413.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4404]
gi|423024871|ref|ZP_17015568.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4522]
gi|423030692|ref|ZP_17021380.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4623]
gi|423038518|ref|ZP_17029192.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043637|ref|ZP_17034304.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423045366|ref|ZP_17036026.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423053905|ref|ZP_17042712.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060880|ref|ZP_17049676.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423704474|ref|ZP_17678899.1| cytidine deaminase [Escherichia coli H730]
gi|424749019|ref|ZP_18177141.1| cytidine deaminase [Escherichia coli O26:H11 str. CFSAN001629]
gi|424772584|ref|ZP_18199678.1| cytidine deaminase [Escherichia coli O111:H8 str. CFSAN001632]
gi|424838525|ref|ZP_18263162.1| cytidine deaminase [Shigella flexneri 5a str. M90T]
gi|425115552|ref|ZP_18517354.1| cytidine deaminase [Escherichia coli 8.0566]
gi|425120279|ref|ZP_18521978.1| cytidine deaminase [Escherichia coli 8.0569]
gi|425273310|ref|ZP_18664722.1| cytidine deaminase [Escherichia coli TW15901]
gi|425283851|ref|ZP_18674890.1| cytidine deaminase [Escherichia coli TW00353]
gi|425289146|ref|ZP_18679994.1| cytidine deaminase [Escherichia coli 3006]
gi|425380176|ref|ZP_18764216.1| cytidine deaminase [Escherichia coli EC1865]
gi|425422961|ref|ZP_18804129.1| cytidine deaminase [Escherichia coli 0.1288]
gi|429719749|ref|ZP_19254680.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429771631|ref|ZP_19303654.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02030]
gi|429781563|ref|ZP_19313492.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429785303|ref|ZP_19317201.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02092]
gi|429791192|ref|ZP_19323049.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02093]
gi|429797019|ref|ZP_19328827.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02281]
gi|429798617|ref|ZP_19330418.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02318]
gi|429807130|ref|ZP_19338857.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02913]
gi|429812030|ref|ZP_19343716.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-03439]
gi|429817550|ref|ZP_19349191.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-04080]
gi|429822761|ref|ZP_19354359.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-03943]
gi|429904141|ref|ZP_19370120.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429908278|ref|ZP_19374242.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429914149|ref|ZP_19380097.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429919180|ref|ZP_19385112.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429924999|ref|ZP_19390913.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429928936|ref|ZP_19394838.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935475|ref|ZP_19401361.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429941155|ref|ZP_19407029.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429943835|ref|ZP_19409698.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429951435|ref|ZP_19417281.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429954747|ref|ZP_19420579.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432370318|ref|ZP_19613405.1| cytidine deaminase [Escherichia coli KTE10]
gi|432417614|ref|ZP_19660219.1| cytidine deaminase [Escherichia coli KTE44]
gi|432450307|ref|ZP_19692572.1| cytidine deaminase [Escherichia coli KTE193]
gi|432481516|ref|ZP_19723473.1| cytidine deaminase [Escherichia coli KTE210]
gi|432485950|ref|ZP_19727866.1| cytidine deaminase [Escherichia coli KTE212]
gi|432526920|ref|ZP_19764014.1| cytidine deaminase [Escherichia coli KTE233]
gi|432534416|ref|ZP_19771392.1| cytidine deaminase [Escherichia coli KTE234]
gi|432576421|ref|ZP_19812882.1| cytidine deaminase [Escherichia coli KTE56]
gi|432627794|ref|ZP_19863771.1| cytidine deaminase [Escherichia coli KTE77]
gi|432637389|ref|ZP_19873260.1| cytidine deaminase [Escherichia coli KTE81]
gi|432661376|ref|ZP_19897022.1| cytidine deaminase [Escherichia coli KTE111]
gi|432671215|ref|ZP_19906745.1| cytidine deaminase [Escherichia coli KTE119]
gi|432675262|ref|ZP_19910722.1| cytidine deaminase [Escherichia coli KTE142]
gi|432685975|ref|ZP_19921273.1| cytidine deaminase [Escherichia coli KTE156]
gi|432692116|ref|ZP_19927345.1| cytidine deaminase [Escherichia coli KTE161]
gi|432704933|ref|ZP_19940035.1| cytidine deaminase [Escherichia coli KTE171]
gi|432737657|ref|ZP_19972416.1| cytidine deaminase [Escherichia coli KTE42]
gi|432750629|ref|ZP_19985233.1| cytidine deaminase [Escherichia coli KTE29]
gi|432765540|ref|ZP_19999978.1| cytidine deaminase [Escherichia coli KTE48]
gi|432806304|ref|ZP_20040232.1| cytidine deaminase [Escherichia coli KTE91]
gi|432809797|ref|ZP_20043690.1| cytidine deaminase [Escherichia coli KTE101]
gi|432832174|ref|ZP_20065748.1| cytidine deaminase [Escherichia coli KTE135]
gi|432875670|ref|ZP_20093943.1| cytidine deaminase [Escherichia coli KTE154]
gi|432934938|ref|ZP_20134375.1| cytidine deaminase [Escherichia coli KTE184]
gi|432955600|ref|ZP_20147540.1| cytidine deaminase [Escherichia coli KTE197]
gi|432968253|ref|ZP_20157168.1| cytidine deaminase [Escherichia coli KTE203]
gi|433033986|ref|ZP_20221702.1| cytidine deaminase [Escherichia coli KTE112]
gi|433048521|ref|ZP_20235875.1| cytidine deaminase [Escherichia coli KTE120]
gi|433092535|ref|ZP_20278802.1| cytidine deaminase [Escherichia coli KTE138]
gi|433174065|ref|ZP_20358591.1| cytidine deaminase [Escherichia coli KTE232]
gi|433194225|ref|ZP_20378215.1| cytidine deaminase [Escherichia coli KTE90]
gi|442592258|ref|ZP_21010238.1| Cytidine deaminase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442600051|ref|ZP_21017751.1| Cytidine deaminase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450245457|ref|ZP_21900637.1| cytidine deaminase [Escherichia coli S17]
gi|78099946|sp|P0ABF6.1|CDD_ECOLI RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|78099947|sp|P0ABF7.1|CDD_SHIFL RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|85540970|sp|Q322V3.1|CDD_SHIBS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|85540972|sp|Q3Z062.1|CDD_SHISS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|123146896|sp|Q0T2Y0.1|CDD_SHIF8 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167006532|sp|A8A204.1|CDD_ECOHS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701675|sp|B7M4Y8.1|CDD_ECO8A RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701676|sp|B1X7N2.1|CDD_ECODH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701678|sp|B6I8J3.1|CDD_ECOSE RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701679|sp|B1LKP0.1|CDD_ECOSM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701693|sp|B2TVV2.1|CDD_SHIB3 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|254813804|sp|B7LA09.1|CDD_ECO55 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|259585867|sp|C4ZSM3.1|CDD_ECOBW RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|2392080|pdb|1AF2|A Chain A, Crystal Structure Of Cytidine Deaminase Complexed With
Uridine
gi|157829950|pdb|1ALN|A Chain A, Crystal Structure Of Cytidine Deaminase Complexed With
3-deazacytidine
gi|157830721|pdb|1CTT|A Chain A, Transition-state Selectivity For A Single Oh Group During
Catalysis By Cytidine Deaminase
gi|157830722|pdb|1CTU|A Chain A, Transition-State Selectivity For A Single Oh Group During
Catalysis By Cytidine Deaminase
gi|145470|gb|AAA23542.1| cytidine deaminase [Escherichia coli]
gi|453291|gb|AAA60533.1| cytidine deaminase [Escherichia coli]
gi|1788465|gb|AAC75204.1| cytidine/deoxycytidine deaminase [Escherichia coli str. K-12
substr. MG1655]
gi|24052577|gb|AAN43750.1| cytidine/deoxycytidine deaminase [Shigella flexneri 2a str. 301]
gi|30041840|gb|AAP17567.1| cytidine/deoxycytidine deaminase [Shigella flexneri 2a str. 2457T]
gi|73856143|gb|AAZ88850.1| cytidine/deoxycytidine deaminase [Shigella sonnei Ss046]
gi|81244947|gb|ABB65655.1| cytidine/deoxycytidine deaminase [Shigella boydii Sb227]
gi|85675257|dbj|BAE76620.1| cytidine/deoxycytidine deaminase [Escherichia coli str. K12 substr.
W3110]
gi|110615668|gb|ABF04335.1| cytidine/deoxycytidine deaminase [Shigella flexneri 5 str. 8401]
gi|157067303|gb|ABV06558.1| cytidine deaminase [Escherichia coli HS]
gi|169889601|gb|ACB03308.1| cytidine/deoxycytidine deaminase [Escherichia coli str. K-12
substr. DH10B]
gi|170518070|gb|ACB16248.1| cytidine deaminase [Escherichia coli SMS-3-5]
gi|187429209|gb|ACD08483.1| cytidine deaminase [Shigella boydii CDC 3083-94]
gi|188488665|gb|EDU63768.1| cytidine deaminase [Escherichia coli 53638]
gi|192955598|gb|EDV86075.1| cytidine deaminase [Escherichia coli E110019]
gi|194424713|gb|EDX40698.1| cytidine deaminase [Escherichia coli 101-1]
gi|209912860|dbj|BAG77934.1| cytidine/deoxycytidine deaminase [Escherichia coli SE11]
gi|218352486|emb|CAU98263.1| cytidine/deoxycytidine deaminase [Escherichia coli 55989]
gi|218361476|emb|CAQ99065.1| cytidine/deoxycytidine deaminase [Escherichia coli IAI1]
gi|238860699|gb|ACR62697.1| cytidine/deoxycytidine deaminase [Escherichia coli BW2952]
gi|242377785|emb|CAQ32548.1| cytidine deaminase [Escherichia coli BL21(DE3)]
gi|253323974|gb|ACT28576.1| cytidine deaminase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974058|gb|ACT39729.1| cytidine deaminase [Escherichia coli B str. REL606]
gi|253978226|gb|ACT43896.1| cytidine deaminase [Escherichia coli BL21(DE3)]
gi|257754765|dbj|BAI26267.1| cytidine/deoxycytidine deaminase [Escherichia coli O26:H11 str.
11368]
gi|257765201|dbj|BAI36696.1| cytidine/deoxycytidine deaminase [Escherichia coli O111:H- str.
11128]
gi|260448763|gb|ACX39185.1| cytidine deaminase [Escherichia coli DH1]
gi|281601600|gb|ADA74584.1| Cytidine deaminase [Shigella flexneri 2002017]
gi|291323323|gb|EFE62751.1| cytidine deaminase [Escherichia coli B088]
gi|300317302|gb|EFJ67086.1| cytidine deaminase [Escherichia coli MS 175-1]
gi|300414026|gb|EFJ97336.1| cytidine deaminase [Escherichia coli MS 115-1]
gi|300450588|gb|EFK14208.1| cytidine deaminase [Escherichia coli MS 116-1]
gi|300461694|gb|EFK25187.1| cytidine deaminase [Escherichia coli MS 187-1]
gi|300527262|gb|EFK48324.1| cytidine deaminase [Escherichia coli MS 107-1]
gi|301077458|gb|EFK92264.1| cytidine deaminase [Escherichia coli MS 146-1]
gi|306908784|gb|EFN39281.1| cytidine deaminase [Escherichia coli W]
gi|309702456|emb|CBJ01782.1| cytidine deaminase [Escherichia coli ETEC H10407]
gi|310332203|gb|EFP99438.1| cytidine deaminase [Escherichia coli 1827-70]
gi|313651249|gb|EFS15647.1| cytidine deaminase [Shigella flexneri 2a str. 2457T]
gi|315061452|gb|ADT75779.1| cytidine deaminase [Escherichia coli W]
gi|315136776|dbj|BAJ43935.1| cytidine deaminase [Escherichia coli DH1]
gi|315615382|gb|EFU96014.1| cytidine deaminase [Escherichia coli 3431]
gi|320186772|gb|EFW61494.1| Cytidine deaminase [Shigella flexneri CDC 796-83]
gi|320199738|gb|EFW74327.1| Cytidine deaminase [Escherichia coli EC4100B]
gi|323168718|gb|EFZ54398.1| cytidine deaminase [Shigella sonnei 53G]
gi|323176961|gb|EFZ62551.1| cytidine deaminase [Escherichia coli OK1180]
gi|323184234|gb|EFZ69611.1| cytidine deaminase [Escherichia coli OK1357]
gi|323377967|gb|ADX50235.1| cytidine deaminase [Escherichia coli KO11FL]
gi|323940788|gb|EGB36976.1| cytidine deaminase [Escherichia coli E482]
gi|323961607|gb|EGB57213.1| cytidine deaminase [Escherichia coli H489]
gi|323972975|gb|EGB68172.1| cytidine deaminase [Escherichia coli TA007]
gi|324020611|gb|EGB89830.1| cytidine deaminase [Escherichia coli MS 117-3]
gi|331039566|gb|EGI11786.1| cytidine deaminase [Escherichia coli H736]
gi|332097436|gb|EGJ02416.1| cytidine deaminase [Shigella boydii 3594-74]
gi|332343921|gb|AEE57255.1| cytidine deaminase [Escherichia coli UMNK88]
gi|332754775|gb|EGJ85140.1| cytidine deaminase [Shigella flexneri 4343-70]
gi|332755181|gb|EGJ85545.1| cytidine deaminase [Shigella flexneri K-671]
gi|332756473|gb|EGJ86824.1| cytidine deaminase [Shigella flexneri 2747-71]
gi|333001278|gb|EGK20846.1| cytidine deaminase [Shigella flexneri VA-6]
gi|333001686|gb|EGK21252.1| cytidine deaminase [Shigella flexneri K-218]
gi|333002862|gb|EGK22418.1| cytidine deaminase [Shigella flexneri K-272]
gi|333016693|gb|EGK36022.1| cytidine deaminase [Shigella flexneri K-304]
gi|333016865|gb|EGK36189.1| cytidine deaminase [Shigella flexneri K-227]
gi|335574905|gb|EGM61217.1| cytidine deaminase [Shigella flexneri J1713]
gi|338769791|gb|EGP24567.1| Cytidine deaminase [Escherichia coli PCN033]
gi|339415609|gb|AEJ57281.1| cytidine deaminase [Escherichia coli UMNF18]
gi|340734333|gb|EGR63463.1| cytidine deaminase [Escherichia coli O104:H4 str. 01-09591]
gi|340739620|gb|EGR73852.1| cytidine deaminase [Escherichia coli O104:H4 str. LB226692]
gi|341916820|gb|EGT66437.1| hypothetical protein C22711_0464 [Escherichia coli O104:H4 str.
C227-11]
gi|342363658|gb|EGU27764.1| cytidine deaminase [Escherichia coli XH140A]
gi|342928927|gb|EGU97649.1| cytidine deaminase [Escherichia coli MS 79-10]
gi|344193410|gb|EGV47491.1| cytidine deaminase [Escherichia coli XH001]
gi|345337425|gb|EGW69857.1| cytidine deaminase [Escherichia coli STEC_B2F1]
gi|345338736|gb|EGW71163.1| cytidine deaminase [Escherichia coli 2534-86]
gi|345353742|gb|EGW85971.1| cytidine deaminase [Escherichia coli 3030-1]
gi|345357981|gb|EGW90169.1| cytidine deaminase [Escherichia coli STEC_DG131-3]
gi|345361799|gb|EGW93956.1| cytidine deaminase [Escherichia coli STEC_EH250]
gi|345373355|gb|EGX05316.1| cytidine deaminase [Escherichia coli STEC_MHI813]
gi|345387352|gb|EGX17174.1| cytidine deaminase [Escherichia coli STEC_S1191]
gi|354861995|gb|EHF22433.1| cytidine deaminase [Escherichia coli O104:H4 str. C236-11]
gi|354867280|gb|EHF27702.1| cytidine deaminase [Escherichia coli O104:H4 str. C227-11]
gi|354869351|gb|EHF29761.1| cytidine deaminase [Escherichia coli O104:H4 str. 04-8351]
gi|354873206|gb|EHF33583.1| cytidine deaminase [Escherichia coli O104:H4 str. 09-7901]
gi|354879960|gb|EHF40296.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-3677]
gi|354889384|gb|EHF49633.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4404]
gi|354892979|gb|EHF53183.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4522]
gi|354895116|gb|EHF55305.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354897390|gb|EHF57548.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4623]
gi|354898751|gb|EHF58902.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354912802|gb|EHF72800.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915807|gb|EHF75783.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917722|gb|EHF77684.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|359332490|dbj|BAL38937.1| cytidine/deoxycytidine deaminase [Escherichia coli str. K-12
substr. MDS42]
gi|371603485|gb|EHN92140.1| cytidine deaminase [Escherichia coli E101]
gi|371606860|gb|EHN95450.1| cytidine deaminase [Escherichia coli B093]
gi|377992430|gb|EHV55577.1| cytidine deaminase [Escherichia coli DEC6B]
gi|377994351|gb|EHV57478.1| cytidine deaminase [Escherichia coli DEC6A]
gi|377997102|gb|EHV60209.1| cytidine deaminase [Escherichia coli DEC6C]
gi|378007156|gb|EHV70125.1| cytidine deaminase [Escherichia coli DEC6D]
gi|378011022|gb|EHV73967.1| cytidine deaminase [Escherichia coli DEC6E]
gi|378033212|gb|EHV95792.1| cytidine deaminase [Escherichia coli DEC7B]
gi|378047133|gb|EHW09505.1| cytidine deaminase [Escherichia coli DEC8A]
gi|378048774|gb|EHW11127.1| cytidine deaminase [Escherichia coli DEC8B]
gi|378062675|gb|EHW24852.1| cytidine deaminase [Escherichia coli DEC8D]
gi|378065451|gb|EHW27596.1| cytidine deaminase [Escherichia coli DEC8E]
gi|378074843|gb|EHW36872.1| cytidine deaminase [Escherichia coli DEC9A]
gi|378077465|gb|EHW39459.1| cytidine deaminase [Escherichia coli DEC9B]
gi|378084294|gb|EHW46206.1| cytidine deaminase [Escherichia coli DEC9C]
gi|378090939|gb|EHW52774.1| cytidine deaminase [Escherichia coli DEC9D]
gi|378095272|gb|EHW57060.1| cytidine deaminase [Escherichia coli DEC9E]
gi|378100489|gb|EHW62185.1| cytidine deaminase [Escherichia coli DEC10A]
gi|378106752|gb|EHW68380.1| cytidine deaminase [Escherichia coli DEC10B]
gi|378111589|gb|EHW73173.1| cytidine deaminase [Escherichia coli DEC10C]
gi|378116691|gb|EHW78211.1| cytidine deaminase [Escherichia coli DEC10D]
gi|378128814|gb|EHW90195.1| cytidine deaminase [Escherichia coli DEC10E]
gi|378131998|gb|EHW93351.1| cytidine deaminase [Escherichia coli DEC10F]
gi|378186921|gb|EHX47542.1| cytidine deaminase [Escherichia coli DEC13A]
gi|378200399|gb|EHX60854.1| cytidine deaminase [Escherichia coli DEC13B]
gi|378200963|gb|EHX61416.1| cytidine deaminase [Escherichia coli DEC13C]
gi|378203167|gb|EHX63591.1| cytidine deaminase [Escherichia coli DEC13D]
gi|378213118|gb|EHX73437.1| cytidine deaminase [Escherichia coli DEC13E]
gi|378220132|gb|EHX80398.1| cytidine deaminase [Escherichia coli DEC14B]
gi|378231219|gb|EHX91330.1| cytidine deaminase [Escherichia coli DEC14D]
gi|378237437|gb|EHX97460.1| cytidine deaminase [Escherichia coli DEC15A]
gi|378243398|gb|EHY03344.1| cytidine deaminase [Escherichia coli DEC15B]
gi|378247153|gb|EHY07072.1| cytidine deaminase [Escherichia coli DEC15C]
gi|378254117|gb|EHY13981.1| cytidine deaminase [Escherichia coli DEC15D]
gi|378258753|gb|EHY18569.1| cytidine deaminase [Escherichia coli DEC15E]
gi|383103574|gb|AFG41083.1| Cytidine deaminase [Escherichia coli P12b]
gi|383392398|gb|AFH17356.1| cytidine deaminase [Escherichia coli KO11FL]
gi|383405709|gb|AFH11952.1| cytidine deaminase [Escherichia coli W]
gi|383467577|gb|EID62598.1| cytidine deaminase [Shigella flexneri 5a str. M90T]
gi|383475157|gb|EID67125.1| cytidine deaminase [Escherichia coli W26]
gi|384380144|gb|EIE38011.1| cytidine deaminase [Escherichia coli J53]
gi|384473161|gb|EIE57205.1| cytidine deaminase [Escherichia coli AI27]
gi|385158185|gb|EIF20175.1| cytidine deaminase [Escherichia coli O32:H37 str. P4]
gi|385536782|gb|EIF83668.1| cytidine deaminase [Escherichia coli M919]
gi|385706391|gb|EIG43432.1| cytidine deaminase [Escherichia coli H730]
gi|386121353|gb|EIG69968.1| cytidine deaminase [Escherichia sp. 4_1_40B]
gi|386147868|gb|EIG94308.1| cytidine deaminase [Escherichia coli 97.0246]
gi|386149838|gb|EIH01127.1| cytidine deaminase [Escherichia coli 5.0588]
gi|386157711|gb|EIH14051.1| cytidine deaminase [Escherichia coli 97.0259]
gi|386167314|gb|EIH33830.1| cytidine deaminase [Escherichia coli 96.0497]
gi|386175235|gb|EIH47227.1| cytidine deaminase [Escherichia coli 99.0741]
gi|386190871|gb|EIH79617.1| cytidine deaminase [Escherichia coli 4.0522]
gi|386194294|gb|EIH88550.1| cytidine deaminase [Escherichia coli JB1-95]
gi|386205298|gb|EII09809.1| cytidine deaminase [Escherichia coli 5.0959]
gi|386213441|gb|EII23866.1| cytidine deaminase [Escherichia coli 9.0111]
gi|386226442|gb|EII48744.1| cytidine deaminase [Escherichia coli 2.3916]
gi|386236400|gb|EII68376.1| cytidine deaminase [Escherichia coli 2.4168]
gi|386240593|gb|EII77516.1| cytidine deaminase [Escherichia coli 3.2303]
gi|386254219|gb|EIJ03909.1| cytidine deaminase [Escherichia coli B41]
gi|386258156|gb|EIJ13638.1| cytidine deaminase [Escherichia coli 900105 (10e)]
gi|388344782|gb|EIL10606.1| cytidine deaminase [Escherichia coli O103:H25 str. CVM9340]
gi|388348245|gb|EIL13863.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9570]
gi|388360057|gb|EIL24304.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9574]
gi|388374108|gb|EIL37310.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM9942]
gi|388379009|gb|EIL41701.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10026]
gi|388399366|gb|EIL60166.1| cytidine deaminase [Escherichia coli 541-1]
gi|388409330|gb|EIL69626.1| cytidine deaminase [Escherichia coli 75]
gi|388416773|gb|EIL76649.1| cytidine deaminase [Escherichia coli CUMT8]
gi|391248309|gb|EIQ07551.1| cytidine deaminase [Shigella flexneri 2850-71]
gi|391250951|gb|EIQ10170.1| cytidine deaminase [Shigella flexneri K-1770]
gi|391255778|gb|EIQ14919.1| cytidine deaminase [Shigella flexneri CCH060]
gi|391271542|gb|EIQ30416.1| cytidine deaminase [Shigella flexneri K-404]
gi|391281885|gb|EIQ40522.1| cytidine deaminase [Shigella sonnei 3226-85]
gi|391284490|gb|EIQ43085.1| cytidine deaminase [Shigella sonnei 3233-85]
gi|391287046|gb|EIQ45579.1| cytidine deaminase [Shigella boydii 4444-74]
gi|391294108|gb|EIQ52361.1| cytidine deaminase [Shigella sonnei 4822-66]
gi|394386315|gb|EJE63821.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10224]
gi|394387014|gb|EJE64484.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9602]
gi|394391773|gb|EJE68602.1| cytidine deaminase [Escherichia coli O111:H8 str. CVM9634]
gi|394401380|gb|EJE77193.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10021]
gi|394420973|gb|EJE94471.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM9952]
gi|394427276|gb|EJE99991.1| cytidine deaminase [Escherichia coli O26:H11 str. CVM10030]
gi|397784708|gb|EJK95561.1| cytidine deaminase [Escherichia coli STEC_O31]
gi|397897545|gb|EJL13952.1| cytidine deaminase [Shigella flexneri 6603-63]
gi|397899727|gb|EJL16099.1| cytidine deaminase [Shigella sonnei str. Moseley]
gi|404290976|gb|EJZ47874.1| cytidine deaminase [Escherichia sp. 1_1_43]
gi|404339178|gb|EJZ65616.1| cytidine deaminase [Shigella flexneri 1485-80]
gi|406777011|gb|AFS56435.1| cytidine deaminase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407053599|gb|AFS73650.1| cytidine deaminase [Escherichia coli O104:H4 str. 2011C-3493]
gi|407066070|gb|AFS87117.1| cytidine deaminase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408193092|gb|EKI18645.1| cytidine deaminase [Escherichia coli TW15901]
gi|408201541|gb|EKI26690.1| cytidine deaminase [Escherichia coli TW00353]
gi|408213698|gb|EKI38177.1| cytidine deaminase [Escherichia coli 3006]
gi|408296543|gb|EKJ14769.1| cytidine deaminase [Escherichia coli EC1865]
gi|408343516|gb|EKJ57910.1| cytidine deaminase [Escherichia coli 0.1288]
gi|408459238|gb|EKJ83021.1| cytidine deaminase [Escherichia coli AD30]
gi|408568232|gb|EKK44265.1| cytidine deaminase [Escherichia coli 8.0566]
gi|408569321|gb|EKK45318.1| cytidine deaminase [Escherichia coli 8.0569]
gi|421938135|gb|EKT95722.1| cytidine deaminase [Escherichia coli O111:H8 str. CFSAN001632]
gi|421943055|gb|EKU00353.1| cytidine deaminase [Escherichia coli O26:H11 str. CFSAN001629]
gi|429346140|gb|EKY82921.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429348892|gb|EKY85648.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02092]
gi|429361114|gb|EKY97771.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02030]
gi|429362545|gb|EKY99192.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02093]
gi|429362816|gb|EKY99461.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02281]
gi|429365934|gb|EKZ02546.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02318]
gi|429376789|gb|EKZ13317.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-02913]
gi|429379263|gb|EKZ15764.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-03439]
gi|429380831|gb|EKZ17320.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-03943]
gi|429393052|gb|EKZ29451.1| cytidine deaminase [Escherichia coli O104:H4 str. 11-04080]
gi|429405153|gb|EKZ41419.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429406919|gb|EKZ43173.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410667|gb|EKZ46888.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414379|gb|EKZ50554.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429420988|gb|EKZ57110.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429429322|gb|EKZ65391.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429432009|gb|EKZ68049.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429436215|gb|EKZ72231.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429438420|gb|EKZ74413.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429448042|gb|EKZ83959.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429451760|gb|EKZ87648.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429457704|gb|EKZ93542.1| cytidine deaminase [Escherichia coli O104:H4 str. Ec12-0466]
gi|430884984|gb|ELC07914.1| cytidine deaminase [Escherichia coli KTE10]
gi|430939127|gb|ELC59344.1| cytidine deaminase [Escherichia coli KTE44]
gi|430979697|gb|ELC96462.1| cytidine deaminase [Escherichia coli KTE193]
gi|431006888|gb|ELD21857.1| cytidine deaminase [Escherichia coli KTE210]
gi|431016347|gb|ELD29894.1| cytidine deaminase [Escherichia coli KTE212]
gi|431060643|gb|ELD69969.1| cytidine deaminase [Escherichia coli KTE234]
gi|431063578|gb|ELD72817.1| cytidine deaminase [Escherichia coli KTE233]
gi|431115340|gb|ELE18864.1| cytidine deaminase [Escherichia coli KTE56]
gi|431163163|gb|ELE63599.1| cytidine deaminase [Escherichia coli KTE77]
gi|431171284|gb|ELE71463.1| cytidine deaminase [Escherichia coli KTE81]
gi|431200492|gb|ELE99218.1| cytidine deaminase [Escherichia coli KTE111]
gi|431210530|gb|ELF08585.1| cytidine deaminase [Escherichia coli KTE119]
gi|431214238|gb|ELF12063.1| cytidine deaminase [Escherichia coli KTE142]
gi|431222148|gb|ELF19439.1| cytidine deaminase [Escherichia coli KTE156]
gi|431226910|gb|ELF24060.1| cytidine deaminase [Escherichia coli KTE161]
gi|431243162|gb|ELF37551.1| cytidine deaminase [Escherichia coli KTE171]
gi|431282550|gb|ELF73430.1| cytidine deaminase [Escherichia coli KTE42]
gi|431296611|gb|ELF86322.1| cytidine deaminase [Escherichia coli KTE29]
gi|431309715|gb|ELF97908.1| cytidine deaminase [Escherichia coli KTE48]
gi|431354446|gb|ELG41172.1| cytidine deaminase [Escherichia coli KTE91]
gi|431362565|gb|ELG49143.1| cytidine deaminase [Escherichia coli KTE101]
gi|431376144|gb|ELG61467.1| cytidine deaminase [Escherichia coli KTE135]
gi|431420616|gb|ELH02900.1| cytidine deaminase [Escherichia coli KTE154]
gi|431453106|gb|ELH33516.1| cytidine deaminase [Escherichia coli KTE184]
gi|431468271|gb|ELH48277.1| cytidine deaminase [Escherichia coli KTE197]
gi|431471370|gb|ELH51263.1| cytidine deaminase [Escherichia coli KTE203]
gi|431550992|gb|ELI24979.1| cytidine deaminase [Escherichia coli KTE112]
gi|431564664|gb|ELI37833.1| cytidine deaminase [Escherichia coli KTE120]
gi|431609865|gb|ELI79170.1| cytidine deaminase [Escherichia coli KTE138]
gi|431692153|gb|ELJ57592.1| cytidine deaminase [Escherichia coli KTE232]
gi|431715675|gb|ELJ79820.1| cytidine deaminase [Escherichia coli KTE90]
gi|441608411|emb|CCP99264.1| Cytidine deaminase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441651104|emb|CCQ03241.1| Cytidine deaminase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449320347|gb|EMD10380.1| cytidine deaminase [Escherichia coli S17]
gi|744207|prf||2014253BU cytidine deaminase
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|416262376|ref|ZP_11640682.1| Cytidine deaminase [Shigella dysenteriae CDC 74-1112]
gi|420380655|ref|ZP_14880117.1| cytidine deaminase [Shigella dysenteriae 225-75]
gi|320176618|gb|EFW51660.1| Cytidine deaminase [Shigella dysenteriae CDC 74-1112]
gi|391301801|gb|EIQ59682.1| cytidine deaminase [Shigella dysenteriae 225-75]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL + LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDL--EITTLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|261340582|ref|ZP_05968440.1| cytidine deaminase [Enterobacter cancerogenus ATCC 35316]
gi|288316992|gb|EFC55930.1| cytidine deaminase [Enterobacter cancerogenus ATCC 35316]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 148/277 (53%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ Q +GL +L L+ A AR +S F+VGA+ G SG + GGN+E
Sbjct: 32 LLTAEQVTTLKQATGLDEDELAFALLPLAAACARADLSHFNVGAIARGISGVWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL + ++
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLRAITVNYTPCGHCRQFMNELNSGLELR----- 146
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
IN R+ H L LPD FGP DL K LL++ +G + + + L
Sbjct: 147 INLPGREPHTLGDYLPDAFGPKDLEIK--TLLMDAQNHGFALS------------GDELS 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN SH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 EAAIAAANMSHTPYSTSPSGVALQCRDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYPDIQRAILAEKADAPLVQWDATAATLKAL 283
>gi|193062366|ref|ZP_03043461.1| cytidine deaminase [Escherichia coli E22]
gi|194427193|ref|ZP_03059744.1| cytidine deaminase [Escherichia coli B171]
gi|260844749|ref|YP_003222527.1| cytidine/deoxycytidine deaminase [Escherichia coli O103:H2 str.
12009]
gi|415798019|ref|ZP_11498330.1| cytidine deaminase [Escherichia coli E128010]
gi|417174701|ref|ZP_12004497.1| cytidine deaminase [Escherichia coli 3.2608]
gi|417182801|ref|ZP_12009358.1| cytidine deaminase [Escherichia coli 93.0624]
gi|417254012|ref|ZP_12045768.1| cytidine deaminase [Escherichia coli 4.0967]
gi|419290085|ref|ZP_13832177.1| cytidine deaminase [Escherichia coli DEC11A]
gi|419295413|ref|ZP_13837459.1| cytidine deaminase [Escherichia coli DEC11B]
gi|419300873|ref|ZP_13842872.1| cytidine deaminase [Escherichia coli DEC11C]
gi|419307003|ref|ZP_13848903.1| cytidine deaminase [Escherichia coli DEC11D]
gi|419312011|ref|ZP_13853873.1| cytidine deaminase [Escherichia coli DEC11E]
gi|419317421|ref|ZP_13859224.1| cytidine deaminase [Escherichia coli DEC12A]
gi|419323593|ref|ZP_13865286.1| cytidine deaminase [Escherichia coli DEC12B]
gi|419329557|ref|ZP_13871161.1| cytidine deaminase [Escherichia coli DEC12C]
gi|419335122|ref|ZP_13876655.1| cytidine deaminase [Escherichia coli DEC12D]
gi|419340593|ref|ZP_13882057.1| cytidine deaminase [Escherichia coli DEC12E]
gi|419870516|ref|ZP_14392609.1| cytidine deaminase [Escherichia coli O103:H2 str. CVM9450]
gi|420391869|ref|ZP_14891122.1| cytidine deaminase [Escherichia coli EPEC C342-62]
gi|192932032|gb|EDV84631.1| cytidine deaminase [Escherichia coli E22]
gi|194414814|gb|EDX31085.1| cytidine deaminase [Escherichia coli B171]
gi|257759896|dbj|BAI31393.1| cytidine/deoxycytidine deaminase [Escherichia coli O103:H2 str.
12009]
gi|323161770|gb|EFZ47651.1| cytidine deaminase [Escherichia coli E128010]
gi|378129886|gb|EHW91256.1| cytidine deaminase [Escherichia coli DEC11A]
gi|378142500|gb|EHX03702.1| cytidine deaminase [Escherichia coli DEC11B]
gi|378148990|gb|EHX10123.1| cytidine deaminase [Escherichia coli DEC11D]
gi|378150489|gb|EHX11604.1| cytidine deaminase [Escherichia coli DEC11C]
gi|378157639|gb|EHX18670.1| cytidine deaminase [Escherichia coli DEC11E]
gi|378164669|gb|EHX25610.1| cytidine deaminase [Escherichia coli DEC12B]
gi|378169004|gb|EHX29904.1| cytidine deaminase [Escherichia coli DEC12A]
gi|378169873|gb|EHX30759.1| cytidine deaminase [Escherichia coli DEC12C]
gi|378182201|gb|EHX42854.1| cytidine deaminase [Escherichia coli DEC12D]
gi|378187504|gb|EHX48115.1| cytidine deaminase [Escherichia coli DEC12E]
gi|386177393|gb|EIH54872.1| cytidine deaminase [Escherichia coli 3.2608]
gi|386184654|gb|EIH67393.1| cytidine deaminase [Escherichia coli 93.0624]
gi|386215939|gb|EII32431.1| cytidine deaminase [Escherichia coli 4.0967]
gi|388339317|gb|EIL05702.1| cytidine deaminase [Escherichia coli O103:H2 str. CVM9450]
gi|391312550|gb|EIQ70158.1| cytidine deaminase [Escherichia coli EPEC C342-62]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEEALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|301021092|ref|ZP_07185133.1| cytidine deaminase [Escherichia coli MS 69-1]
gi|419920699|ref|ZP_14438810.1| cytidine deaminase [Escherichia coli KD2]
gi|432793358|ref|ZP_20027442.1| cytidine deaminase [Escherichia coli KTE78]
gi|432799316|ref|ZP_20033338.1| cytidine deaminase [Escherichia coli KTE79]
gi|300398273|gb|EFJ81811.1| cytidine deaminase [Escherichia coli MS 69-1]
gi|388384326|gb|EIL46060.1| cytidine deaminase [Escherichia coli KD2]
gi|431339021|gb|ELG26083.1| cytidine deaminase [Escherichia coli KTE78]
gi|431343182|gb|ELG30146.1| cytidine deaminase [Escherichia coli KTE79]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQNHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|419922183|ref|ZP_14440205.1| cytidine deaminase [Escherichia coli 541-15]
gi|388396759|gb|EIL57833.1| cytidine deaminase [Escherichia coli 541-15]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYAMT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|422780945|ref|ZP_16833730.1| cytidine deaminase [Escherichia coli TW10509]
gi|323977663|gb|EGB72749.1| cytidine deaminase [Escherichia coli TW10509]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|218549556|ref|YP_002383347.1| cytidine deaminase [Escherichia fergusonii ATCC 35469]
gi|422804838|ref|ZP_16853270.1| cytidine deaminase [Escherichia fergusonii B253]
gi|424816936|ref|ZP_18242087.1| cytidine deaminase [Escherichia fergusonii ECD227]
gi|226701681|sp|B7LVA3.1|CDD_ESCF3 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|218357097|emb|CAQ89730.1| cytidine/deoxycytidine deaminase [Escherichia fergusonii ATCC
35469]
gi|324114441|gb|EGC08410.1| cytidine deaminase [Escherichia fergusonii B253]
gi|325497956|gb|EGC95815.1| cytidine deaminase [Escherichia fergusonii ECD227]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAILAEKADAPLIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|417532266|ref|ZP_12186701.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353663143|gb|EHD01929.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAVVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|417854585|ref|ZP_12499872.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338217660|gb|EGP03506.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 297
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 148/286 (51%), Gaps = 29/286 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 38 PYFTVE-----HLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 92
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 93 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 152
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
+ +N L LPD FGP DL + LL+ N +++ ET++P
Sbjct: 153 LPHSQNNL-----LHSYLPDAFGPADLAIQH--FLLDAQDNQLTY--------ETQDP-- 195
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 196 -VMLTALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLLL 254
Query: 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 255 ---SGDTLQNIQRIV---MLEKANHLCYRHMAEDLVANLVDIPLDY 294
>gi|432617211|ref|ZP_19853326.1| cytidine deaminase [Escherichia coli KTE75]
gi|431154152|gb|ELE54974.1| cytidine deaminase [Escherichia coli KTE75]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALVAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|365540047|ref|ZP_09365222.1| cytidine deaminase [Vibrio ordalii ATCC 33509]
Length = 295
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 140/267 (52%), Gaps = 24/267 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL +L L+ A A P+S F+VGA+ G SGR++ G N+EF G L Q++HAE
Sbjct: 45 SGLDDAELRVALLPFAAAYAYVPLSNFYVGAIVRGLSGRLYFGANIEFSGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL + I + +R L
Sbjct: 105 QCAISHAWMKGEQGVADITINFSPCGHCRQFMNELTTADSLAIQLP-----QRDEKSLQE 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP DL +G+ + +G+ ++P L AL N+S+AP
Sbjct: 160 YLPESFGPADL----------GVDSGLMADANHGKTTTEDDPLIGL---ALNGLNRSYAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+ SGVA+ G Y G+Y E+AA+NPSL P+Q ALV + G ++ IVA
Sbjct: 207 YTNNLSGVALQVENGKTYVGAYAENAAFNPSLPPLQVALVQLMMDGQH------FDNIVA 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPK 286
AALVE D + + L+VI+P
Sbjct: 261 AALVEMSDGSISHLADTQATLEVINPD 287
>gi|366160592|ref|ZP_09460454.1| cytidine deaminase [Escherichia sp. TW09308]
gi|432372820|ref|ZP_19615861.1| cytidine deaminase [Escherichia coli KTE11]
gi|430895959|gb|ELC18210.1| cytidine deaminase [Escherichia coli KTE11]
Length = 294
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILL------NLKGYDYPDIQRAILAEKADAPLVQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|325578355|ref|ZP_08148490.1| cytidine deaminase [Haemophilus parainfluenzae ATCC 33392]
gi|325160091|gb|EGC72220.1| cytidine deaminase [Haemophilus parainfluenzae ATCC 33392]
Length = 291
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 147/281 (52%), Gaps = 26/281 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + S+ + LT +QL L+ A + PIS+FHVGA+ +G SG + G N EF G
Sbjct: 33 AEKVRSICDEFKLTPVQLGLALLPVAACYSHTPISEFHVGAIAIGESGDFYFGANQEFKG 92
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
+ Q+IHAEQ I++ L EPR+ + V+ PCGHCRQF+ EL D+ I + +
Sbjct: 93 GSMAQTIHAEQSAISHAWLRNEPRITDIVVNYTPCGHCRQFMNELYQAQDLKIHLPHSQN 152
Query: 130 NERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAA 189
N PL LPD FGP D L D+ LLL + G + ++ + A
Sbjct: 153 N-----PLPQYLPDSFGPKD-LGVDL-LLLNKEEQGFTLTT-----------EDEVANKA 194
Query: 190 LEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSG 248
+ AN++H+PYSK P GV I+ G + G Y E+AA+NPSL +Q A+ AYL +
Sbjct: 195 ILGANRAHSPYSKSPHGVGILFKNGEMICGRYAENAAFNPSLPAMQTAINFAYL----NQ 250
Query: 249 GGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ER+V A EK + ++ A +LL + K E+
Sbjct: 251 LDVSEIERVVFA---EKPLRLSHRKMAEQLLKSLCKVKMEY 288
>gi|417419202|ref|ZP_12159924.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353619698|gb|EHC70013.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 294
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYYGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|312884480|ref|ZP_07744184.1| cytidine deaminase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367792|gb|EFP95340.1| cytidine deaminase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 295
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 152/283 (53%), Gaps = 24/283 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + SGL QL L+ A A P+S+F+VGAV G SG ++ G NVE
Sbjct: 32 TLSATQFEELLDLSGLEDHQLRLALLPFAAAFAHVPLSQFYVGAVVKGLSGTLYFGANVE 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ + Q+IHAEQ I++ + E + + ++ +PCGHCRQF+ EL +NI +
Sbjct: 92 FSGVQIGQTIHAEQCAISHAWMKGEQGITDITINFSPCGHCRQFMSELATADVLNIQLPE 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
S + Y+ LP+ FGP+DL K +G N+ +G+ ET + LK
Sbjct: 152 GESKKLNYY-----LPESFGPHDLGIK----------SGFMANVDHGK--ETTEKDQLLK 194
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA A NKS++PY+ SGVAI G Y+G+Y E+AA+NPSL P+Q +++ L
Sbjct: 195 IAA-RALNKSYSPYTGSLSGVAIKTKNGKTYQGAYAENAAFNPSLPPLQVSIIQLLMDAQ 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
E I + AL+E ++ V Q + + +L+ I P +
Sbjct: 254 K------LENIESVALIETKNGHVSQLASTQAMLEAIDPDIQL 290
>gi|331673671|ref|ZP_08374434.1| cytidine deaminase [Escherichia coli TA280]
gi|331068944|gb|EGI40336.1| cytidine deaminase [Escherichia coli TA280]
Length = 294
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAILAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|448241322|ref|YP_007405375.1| cytidine/deoxycytidine deaminase [Serratia marcescens WW4]
gi|445211686|gb|AGE17356.1| cytidine/deoxycytidine deaminase [Serratia marcescens WW4]
Length = 294
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 132/242 (54%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS FHVGA+ G SG ++ G N+EF G PL Q++HAEQ +T+ L EP L + V+
Sbjct: 67 PISHFHVGAIARGQSGNLYFGANMEFSGAPLQQTVHAEQCAVTHAWLRGEPALASVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + ++ I + R L+ LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGGELQIRLPG-----RAPATLADYLPDAFGPKDL--DIASLLMDK 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + L AAL AAN+SHAPYS SGVA+ +G++Y G Y
Sbjct: 180 VDHG-----------HRLALDDALAQAALAAANQSHAPYSNAHSGVALETQDGSLYAGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ +GG + I A L E + A++ Q A R L
Sbjct: 229 AENAAFNPSLPPLQAALILLNLSGGD------CQNIRRAVLAEPQKAILSQWDATRATLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|258620233|ref|ZP_05715272.1| cytidine deaminase [Vibrio mimicus VM573]
gi|424807830|ref|ZP_18233232.1| cytidine deaminase [Vibrio mimicus SX-4]
gi|258587591|gb|EEW12301.1| cytidine deaminase [Vibrio mimicus VM573]
gi|342324367|gb|EGU20148.1| cytidine deaminase [Vibrio mimicus SX-4]
Length = 295
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSFAPISEFYVGAIVRGVSGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKSLQEYLPESFGPADLGID-----------SGLMSPMDHGK---TSSDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N S++PY++ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISYSPYTQNFSGVALKMNSGAVYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEEIEAAALVETSTGKISHLADTQATLEVINPDI 288
>gi|311278873|ref|YP_003941104.1| cytidine deaminase [Enterobacter cloacae SCF1]
gi|308748068|gb|ADO47820.1| cytidine deaminase [Enterobacter cloacae SCF1]
Length = 294
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGVSGAWYFGGNMEFIGATMQQTVHAEQSAISHAWLRGETSLKAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLALR-----INLPGRAPHTLQDYLPDAFGPKDLEIKT--LLMDPQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA+ AANKSH PYSK PSGVA+ +G I+ GSY
Sbjct: 181 DHGYALK------------GDALTQAAIGAANKSHMPYSKSPSGVALECRDGTIFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L E+ DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYSDIQRAVLAERADAPLIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|407072326|ref|ZP_11103164.1| cytidine deaminase [Vibrio cyclitrophicus ZF14]
Length = 295
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + +S+ SGL+ + L+ A + P+S F+VGA+ G SGR++ G N+E
Sbjct: 32 TISKEQFQSLLDASGLSDKEARLALLPIAAAYSYAPLSDFYVGAIVRGLSGRLYFGANLE 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
G L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 IAGAQLGQTVHAEQSAISHAWMKGEEGLSDITINFSPCGHCRQFMNELTTAKELKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R L LPD FGP DL G+ L + E +P +
Sbjct: 151 ----QRDEMSLQEYLPDSFGPADL----------GITTGLMTKLDHQYTSEETSP---VV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
+AL A N+SHAPY+K SGV++ G I+ G+Y E+AA+NPSL P+Q ALV AG
Sbjct: 194 VSALTALNRSHAPYTKNLSGVSLQLTTGEIFTGAYAENAAFNPSLPPLQVALVQLKLAGF 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E+I AALVE D + + L+ I+P
Sbjct: 254 D------FEQIENAALVEIADGSISHLADTQSTLEAINPDI 288
>gi|336123955|ref|YP_004566003.1| cytidine deaminase [Vibrio anguillarum 775]
gi|335341678|gb|AEH32961.1| Cytidine deaminase [Vibrio anguillarum 775]
Length = 295
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 140/267 (52%), Gaps = 24/267 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL +L L+ A A P+S F+VGA+ G SGR++ G N+EF G L Q++HAE
Sbjct: 45 SGLDDAELRVALLPFAAAYAYVPLSNFYVGAIVRGLSGRLYFGANMEFSGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL + I + +R L
Sbjct: 105 QCAISHAWMKGEQGVADITINFSPCGHCRQFMNELTTADSLAIQLP-----QRDEKSLQE 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP DL +G+ + +G+ ++P L AL N+S+AP
Sbjct: 160 YLPESFGPADL----------GVDSGLMADANHGKTTTEDDPLIGL---ALNGLNRSYAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+ SGVA+ G Y G+Y E+AA+NPSL P+Q ALV + G ++ IVA
Sbjct: 207 YTNNLSGVALQIENGKTYVGAYAENAAFNPSLPPLQVALVQLMMDGQR------FDNIVA 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPK 286
AALVE D + + L+VI+P
Sbjct: 261 AALVEMSDGSISHLADTQATLEVINPD 287
>gi|425305864|ref|ZP_18695575.1| cytidine deaminase [Escherichia coli N1]
gi|408228489|gb|EKI52023.1| cytidine deaminase [Escherichia coli N1]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLRGYD------YPDIQRAILAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|161502671|ref|YP_001569783.1| cytidine deaminase [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189081900|sp|A9MKS5.1|CDD_SALAR RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|160864018|gb|ABX20641.1| hypothetical protein SARI_00718 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 130/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLCGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS+ PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFALT------------GDTLTQAAITAANKSHMPYSQSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|204928982|ref|ZP_03220125.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|452119612|ref|YP_007469860.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204321526|gb|EDZ06725.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|451908616|gb|AGF80422.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G F L + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHG--FRLTG----------DTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|16761125|ref|NP_456742.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29141179|ref|NP_804521.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213023250|ref|ZP_03337697.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
gi|213419692|ref|ZP_03352758.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
gi|213586756|ref|ZP_03368582.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
gi|289811815|ref|ZP_06542444.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
gi|289824282|ref|ZP_06543877.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|378958823|ref|YP_005216309.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|81593435|sp|Q8Z5A8.1|CDD_SALTI RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|25326138|pir||AE0780 cytidine deaminase [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16503423|emb|CAD02563.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136805|gb|AAO68370.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|374352695|gb|AEZ44456.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 142/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GNTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>gi|260901797|ref|ZP_05910192.1| cytidine deaminase [Vibrio parahaemolyticus AQ4037]
gi|308108070|gb|EFO45610.1| cytidine deaminase [Vibrio parahaemolyticus AQ4037]
Length = 295
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 150/281 (53%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TLSAQQFEQLLSATSLSDKELRVALLPFAAAYSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 FFGVQLGQTVHAEQSAISHAWMKGEHGVKDITINFSPCGHCRQFMNELSTAKELKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + + HQ +C+ + + L
Sbjct: 151 ----ERDEKSLHEYLPEAFGPADLGIESGLMTEVKHQ-----FVCDDE--------DALI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+EA N SHAPY+ SG+A+ G ++KG+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QQAVEAMNMSHAPYTNNLSGLALELANGRVFKGAYAENAAFNPSLPPLQVALIQVLLAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ ++ I AAALVE + + L+ ++P
Sbjct: 254 T------FDSIKAAALVENSKGKISHLADTQSTLEALNPDI 288
>gi|417540387|ref|ZP_12192428.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353662766|gb|EHD01661.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 140/269 (52%), Gaps = 25/269 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHA 275
Y I A L EK DA + Q A
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDA 275
>gi|262171742|ref|ZP_06039420.1| cytidine deaminase [Vibrio mimicus MB-451]
gi|261892818|gb|EEY38804.1| cytidine deaminase [Vibrio mimicus MB-451]
Length = 295
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 144/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGLEDADLRVALLPIAAAYSFAPISEFYVGAIVRGVSGRLYLGANMEFTGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRAAKSLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +G+ T + E L AL A N S++
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPMDHGK---TSSDDEELIQQALRAMNISYS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL + G S +E I
Sbjct: 206 PYTQNFSGVALKMHSGAVYLGAYAENAAFNPSLPPLQVALAQAMMMGES------FEEIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVETSTGKISHLADTQATLEVINPDI 288
>gi|417320008|ref|ZP_12106554.1| cytidine deaminase [Vibrio parahaemolyticus 10329]
gi|328472971|gb|EGF43819.1| cytidine deaminase [Vibrio parahaemolyticus 10329]
Length = 295
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 150/281 (53%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TLSAQQFEQLLSSTSLSDKELRVALLPFAAAYSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 FFGVQLGQTVHAEQSAISHAWMKGEHGVKDITINFSPCGHCRQFMNELSTAKELKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + + HQ +C+ + + L
Sbjct: 151 ----ERDEKSLHEYLPEAFGPADLGIESGLMAEVKHQ-----FVCDDE--------DALI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+EA N SHAPY+ SG+A+ G ++KG+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QQAVEAMNMSHAPYTSNLSGLALELANGRVFKGAYAENAAFNPSLPPLQVALIQVLLAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ ++ I AAALVE + + L+ ++P
Sbjct: 254 T------FDSIKAAALVENSKGKISHLADTQSTLEALNPDI 288
>gi|296103791|ref|YP_003613937.1| cytidine deaminase [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058250|gb|ADF62988.1| cytidine deaminase [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 126/241 (52%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKALSAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLQLR-----INLPGRAPHTLGDYLPDAFGPKDLEIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA+ AANKSH PYSK PSGVA+ +G I+ GSY
Sbjct: 181 DHGYTLT------------GDDLTQAAIRAANKSHTPYSKSPSGVALQCRDGRIFSGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL G Y I A L E DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGALNLL------SLNGYDYPDIQRAILAEIADAPLIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|194431485|ref|ZP_03063777.1| cytidine deaminase [Shigella dysenteriae 1012]
gi|416286644|ref|ZP_11648543.1| Cytidine deaminase [Shigella boydii ATCC 9905]
gi|417672572|ref|ZP_12322038.1| cytidine deaminase [Shigella dysenteriae 155-74]
gi|417688695|ref|ZP_12337936.1| cytidine deaminase [Shigella boydii 5216-82]
gi|420346086|ref|ZP_14847511.1| cytidine deaminase [Shigella boydii 965-58]
gi|194420310|gb|EDX36387.1| cytidine deaminase [Shigella dysenteriae 1012]
gi|320178909|gb|EFW53872.1| Cytidine deaminase [Shigella boydii ATCC 9905]
gi|332092656|gb|EGI97727.1| cytidine deaminase [Shigella dysenteriae 155-74]
gi|332093242|gb|EGI98302.1| cytidine deaminase [Shigella boydii 5216-82]
gi|391274806|gb|EIQ33606.1| cytidine deaminase [Shigella boydii 965-58]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLLQWDTTSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|416898176|ref|ZP_11927740.1| cytidine deaminase [Escherichia coli STEC_7v]
gi|417115180|ref|ZP_11966316.1| cytidine deaminase [Escherichia coli 1.2741]
gi|422799423|ref|ZP_16847922.1| cytidine deaminase [Escherichia coli M863]
gi|323968067|gb|EGB63477.1| cytidine deaminase [Escherichia coli M863]
gi|327252380|gb|EGE64039.1| cytidine deaminase [Escherichia coli STEC_7v]
gi|386140599|gb|EIG81751.1| cytidine deaminase [Escherichia coli 1.2741]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|420336788|ref|ZP_14838361.1| cytidine deaminase [Shigella flexneri K-315]
gi|391261606|gb|EIQ20652.1| cytidine deaminase [Shigella flexneri K-315]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++H EQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHGEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|429121649|ref|ZP_19182264.1| Cytidine deaminase [Cronobacter sakazakii 680]
gi|426323842|emb|CCK13001.1| Cytidine deaminase [Cronobacter sakazakii 680]
Length = 263
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 147/278 (52%), Gaps = 27/278 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ GGN+E
Sbjct: 1 MLSAEQVADVRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGNLYFGGNME 60
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 61 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 114
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL K L+ +T +G + + L
Sbjct: 115 RINLPGRAPSQLGDYLPDAFGPRDLDIK--TLIFDTENHGYALK------------GDAL 160
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+AI +G I+ GSY E+AA+NPSL P+QAAL
Sbjct: 161 TQAAIAAANRSHAPYSQSPSGLAIETRDGEIFTGSYAENAAFNPSLPPLQAALNLMSL-- 218
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I AL E++DA + Q A L+ +
Sbjct: 219 ----NGYAWADIKRVALAERDDATIVQRDATAATLKAL 252
>gi|432851434|ref|ZP_20081819.1| cytidine deaminase [Escherichia coli KTE144]
gi|431399772|gb|ELG83162.1| cytidine deaminase [Escherichia coli KTE144]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|425300981|ref|ZP_18690879.1| cytidine deaminase [Escherichia coli 07798]
gi|408213367|gb|EKI37852.1| cytidine deaminase [Escherichia coli 07798]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRVVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|156933280|ref|YP_001437196.1| cytidine deaminase [Cronobacter sakazakii ATCC BAA-894]
gi|167006535|sp|A7MLJ4.1|CDD_ENTS8 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|156531534|gb|ABU76360.1| hypothetical protein ESA_01092 [Cronobacter sakazakii ATCC BAA-894]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 147/278 (52%), Gaps = 27/278 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ GGN+E
Sbjct: 32 MLSAEQVADVRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGNLYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 145
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL K L+ +T +G + + L
Sbjct: 146 RINLPGRAPSQLGDYLPDAFGPRDLDIK--TLIFDTENHGYALK------------GDAL 191
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+AI +G I+ GSY E+AA+NPSL P+QAAL
Sbjct: 192 TQAAIAAANRSHAPYSQSPSGLAIETRDGEIFTGSYAENAAFNPSLPPLQAALNLMSL-- 249
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I AL E++DA + Q A L+ +
Sbjct: 250 ----NGYAWADIKRVALAERDDATIVQRDATAATLKAL 283
>gi|417146256|ref|ZP_11987214.1| cytidine deaminase [Escherichia coli 1.2264]
gi|386163708|gb|EIH25503.1| cytidine deaminase [Escherichia coli 1.2264]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRTVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|300902208|ref|ZP_07120208.1| cytidine deaminase [Escherichia coli MS 84-1]
gi|301306539|ref|ZP_07212603.1| cytidine deaminase [Escherichia coli MS 124-1]
gi|415863778|ref|ZP_11536982.1| cytidine deaminase [Escherichia coli MS 85-1]
gi|417639876|ref|ZP_12290019.1| cytidine deaminase [Escherichia coli TX1999]
gi|419170798|ref|ZP_13714684.1| cytidine deaminase [Escherichia coli DEC7A]
gi|419181437|ref|ZP_13725051.1| cytidine deaminase [Escherichia coli DEC7C]
gi|419186882|ref|ZP_13730396.1| cytidine deaminase [Escherichia coli DEC7D]
gi|419192173|ref|ZP_13735627.1| cytidine deaminase [Escherichia coli DEC7E]
gi|420386189|ref|ZP_14885540.1| cytidine deaminase [Escherichia coli EPECa12]
gi|427805256|ref|ZP_18972323.1| cytidine/deoxycytidine deaminase [Escherichia coli chi7122]
gi|427809815|ref|ZP_18976880.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|433130715|ref|ZP_20316151.1| cytidine deaminase [Escherichia coli KTE163]
gi|433135377|ref|ZP_20320722.1| cytidine deaminase [Escherichia coli KTE166]
gi|443618199|ref|YP_007382055.1| cytidine deaminase [Escherichia coli APEC O78]
gi|300405727|gb|EFJ89265.1| cytidine deaminase [Escherichia coli MS 84-1]
gi|300838240|gb|EFK66000.1| cytidine deaminase [Escherichia coli MS 124-1]
gi|315255345|gb|EFU35313.1| cytidine deaminase [Escherichia coli MS 85-1]
gi|345393368|gb|EGX23144.1| cytidine deaminase [Escherichia coli TX1999]
gi|378014842|gb|EHV77739.1| cytidine deaminase [Escherichia coli DEC7A]
gi|378023685|gb|EHV86357.1| cytidine deaminase [Escherichia coli DEC7C]
gi|378028874|gb|EHV91490.1| cytidine deaminase [Escherichia coli DEC7D]
gi|378038702|gb|EHW01211.1| cytidine deaminase [Escherichia coli DEC7E]
gi|391305256|gb|EIQ63047.1| cytidine deaminase [Escherichia coli EPECa12]
gi|412963438|emb|CCK47363.1| cytidine/deoxycytidine deaminase [Escherichia coli chi7122]
gi|412969994|emb|CCJ44637.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|431645948|gb|ELJ13488.1| cytidine deaminase [Escherichia coli KTE163]
gi|431656364|gb|ELJ23350.1| cytidine deaminase [Escherichia coli KTE166]
gi|443422707|gb|AGC87611.1| cytidine deaminase [Escherichia coli APEC O78]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGV + +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVTLECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|238790964|ref|ZP_04634705.1| Cytidine deaminase [Yersinia frederiksenii ATCC 33641]
gi|238720942|gb|EEQ12641.1| Cytidine deaminase [Yersinia frederiksenii ATCC 33641]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 133/242 (54%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F VGA+ G SG ++ G N+EF G+ L Q+IHAEQ +T+ L E L + V+
Sbjct: 67 PVSHFMVGAIARGISGNLYFGANMEFGGVALQQTIHAEQCAVTHAWLRGEASLVSITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + ++I + R L LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTGLHIHLPG-----RPASTLGQYLPDSFGPKDL--AITTLLMDP 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G ++ +T + L AAL+ AN SHAPYS+ SGVA+ +G++Y G Y
Sbjct: 180 VDHGY-------KVAQT----DALTQAALDGANHSHAPYSQSHSGVALEAADGSLYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAAL+ A SG G R V LVE ++ Q A + L
Sbjct: 229 AENAAFNPSLPPLQAALI---LANLSGKDCGAIRRAV---LVEGRKPMLTQWDATQSTLA 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|433657508|ref|YP_007274887.1| Cytidine deaminase [Vibrio parahaemolyticus BB22OP]
gi|432508196|gb|AGB09713.1| Cytidine deaminase [Vibrio parahaemolyticus BB22OP]
Length = 295
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 150/281 (53%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TLSAQQFEQLLSATSLSDKELRVALLPFAAAYSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 FFGVQLGQTVHAEQSAISHAWMKGEHGVKDITINFSPCGHCRQFMNELSTAKELKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + + HQ +C+ + + L
Sbjct: 151 ----ERDEKSLHEYLPEAFGPADLGIESGLMAEVKHQ-----FVCDDE--------DALI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+EA N SHAPY+ SG+A+ G ++KG+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QQAVEAMNMSHAPYTNNLSGLALELANGRVFKGAYAENAAFNPSLPPLQVALIQVLLAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ ++ I AAALVE + + L+ ++P
Sbjct: 254 T------FDSIKAAALVENSKGKISHLADTQSTLEALNPDI 288
>gi|429105374|ref|ZP_19167243.1| Cytidine deaminase [Cronobacter malonaticus 681]
gi|426292097|emb|CCJ93356.1| Cytidine deaminase [Cronobacter malonaticus 681]
Length = 294
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 149/278 (53%), Gaps = 27/278 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ GGN+E
Sbjct: 32 MLSAEQVADIRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGNLYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 145
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL K L+ +T +G + + L
Sbjct: 146 RINLPGRAPSQLGDYLPDAFGPRDLDIK--TLIFDTENHGYALK------------GDAL 191
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+AI +G ++ GSY E+AA+NPSL P+QAAL L+
Sbjct: 192 TQAAIAAANRSHAPYSQSPSGLAIETRDGTVFTGSYAENAAFNPSLPPLQAAL-NLLSLN 250
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I AL E++DA + Q A L+ +
Sbjct: 251 GY-----AWADIKRVALAERDDATIVQRDATAATLKAL 283
>gi|315633930|ref|ZP_07889219.1| cytidine deaminase [Aggregatibacter segnis ATCC 33393]
gi|315477180|gb|EFU67923.1| cytidine deaminase [Aggregatibacter segnis ATCC 33393]
Length = 298
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 144/287 (50%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K +T QL L+ A A PIS F+VGA+ G G + G
Sbjct: 39 PHFAVQ-----HLCNKHQITPQQLSLQLLPIAAFYATTPISHFNVGAIATGGRGNFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ IT+ + E ++ ++V+ PCGHCRQF+ EL + + I
Sbjct: 94 NQEFCQTDIQQTIHAEQSAITHAWMRGEKQITDISVNYTPCGHCRQFMNELNSAEKLQIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +N PL LPD FGP +L ++ L LL+ H N +S N + I +
Sbjct: 154 LPHSQNN-----PLHQYLPDAFGPKNL---NIQLHLLDQHDNQLSLNSNDPVISQ----- 200
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
AL AN++HAPYS G+A+ + +IY GSY E+AA+NPSL +Q AL YL
Sbjct: 201 ------ALAMANQAHAPYSNAFHGIALQTQDQHIYHGSYAENAAFNPSLPAMQVAL-NYL 253
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
G E I A +VEK + + A LL V K E+
Sbjct: 254 ILSGE-----AVENITRAVMVEKSHTLNYKAMAEALLASVCEVKLEY 295
>gi|389840335|ref|YP_006342419.1| cytidine deaminase [Cronobacter sakazakii ES15]
gi|387850811|gb|AFJ98908.1| cytidine deaminase [Cronobacter sakazakii ES15]
Length = 294
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 147/278 (52%), Gaps = 27/278 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ GGN+E
Sbjct: 32 MLNAEQVADVRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGNLYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 145
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL K L+ +T +G + + L
Sbjct: 146 RINLPGRAPSQLGDYLPDAFGPRDLDIK--TLIFDTENHGYALK------------GDAL 191
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+AI +G I+ GSY E+AA+NPSL P+QAAL
Sbjct: 192 TQAAIAAANRSHAPYSQSPSGLAIETRDGEIFTGSYAENAAFNPSLPPLQAALNLMSL-- 249
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I AL E++DA + Q A L+ +
Sbjct: 250 ----NGYAWADIKRVALAERDDATIVQRDATAATLKAL 283
>gi|258624407|ref|ZP_05719354.1| cytidine deaminase [Vibrio mimicus VM603]
gi|258583254|gb|EEW08056.1| cytidine deaminase [Vibrio mimicus VM603]
Length = 295
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 144/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGLEDADLRVALLPIAAAYSFAPISEFYVGAIVRGVSGRLYLGANMEFTGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRAAKSLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +G+ T + E L AL A N S++
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPMDHGK---TSSDDEELIQQALRAMNISYS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL + G S +E I
Sbjct: 206 PYTQNFSGVALKMHSGAVYLGAYAENAAFNPSLPPLQVALAQAMMMGES------FEEIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVETSAGKISHLADTQATLEVINPDI 288
>gi|373467063|ref|ZP_09558367.1| cytidine deaminase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759440|gb|EHO48173.1| cytidine deaminase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 292
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 147/281 (52%), Gaps = 26/281 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ E + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVEQLCRDFELTPLKLAMHLLPIAASYSHTAISHFNVGAIAIGEQGNFYFGANQEFSNS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGPND LD LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPND-LDIATHLLAEENHDLIA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
ERIV +VEK + + A LL + S K E++
Sbjct: 253 KLSDIERIV---MVEKALKLSHKMMAEALLSTLTSVKLEYH 290
>gi|307130540|ref|YP_003882556.1| cytidine/deoxycytidine deaminase [Dickeya dadantii 3937]
gi|306528069|gb|ADM97999.1| cytidine/deoxycytidine deaminase [Dickeya dadantii 3937]
Length = 295
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S FHVGA+ G SG + G N+EF G+PL Q++HAEQ I++ L EP L+ + V+
Sbjct: 67 PVSHFHVGAIAQGVSGAFYWGANMEFDGMPLQQTVHAEQSAISHAWLRDEPALRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + ++ IC+ R L H LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSAPELRICLPG-----RSPALLGHYLPDAFGPRDLAIN--TLLMDD 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
NG++ + L AL AAN+SHAPYS SG+A+ G Y G Y
Sbjct: 180 IDNGLALTT-----------DDALHQLALAAANRSHAPYSNAFSGIALETRRGRCYAGRY 228
Query: 222 MESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
E+AA+NPSL P+QAAL + LA G + I A LVE + A+ LL
Sbjct: 229 AENAAFNPSLPPLQAALNLVNLA-------GEAFSDIQRAVLVESGHVALSHWSLAQPLL 281
>gi|416052374|ref|ZP_11578249.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
e str. SC1083]
gi|347992103|gb|EGY33528.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
e str. SC1083]
Length = 298
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 141/277 (50%), Gaps = 31/277 (11%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K +T QL L+ A A PIS F+VGAV G G + G
Sbjct: 39 PHFAVQ-----HLCNKHQITPKQLALQLLPIAACYATTPISHFNVGAVVHGIGGDFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I
Sbjct: 94 NQEFCRTDIQQTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +N L H LPD FGP DL ++ L LL+ H N +S N T++P
Sbjct: 154 LPHSQNN-----LLQHYLPDAFGPKDL---NIRLHLLDQHDNQLSLN--------TDDP- 196
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
L AL AN++HAPYS G+AI +IY GSY E+AA+NPSL +Q AL +
Sbjct: 197 --LVLQALTMANQAHAPYSNSFHGIAIQTRNQHIYHGSYAENAAFNPSLPAMQVALNHLI 254
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
+G E IV +VEK D + + A LL
Sbjct: 255 LSGEE------VENIVRVVMVEKSDTLHYKAMAEELL 285
>gi|365971347|ref|YP_004952908.1| cytidine deaminase [Enterobacter cloacae EcWSU1]
gi|365750260|gb|AEW74487.1| Cytidine deaminase [Enterobacter cloacae EcWSU1]
Length = 294
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLCGEQALSAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + ++ IN R H L LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLELR-----INLPGRAPHTLGDYLPDAFGPKDLDIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + + L AA+ AANKSH PYS PSGVA+ +G I+ GSY
Sbjct: 181 DHGFALS------------GDALSEAAIRAANKSHTPYSHSPSGVALQCRDGRIFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAPLIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|432869512|ref|ZP_20090105.1| cytidine deaminase [Escherichia coli KTE147]
gi|431410098|gb|ELG93260.1| cytidine deaminase [Escherichia coli KTE147]
Length = 294
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALASITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHALRDYLPDAFGPKDLEIKT--LLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYH------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|385867858|pdb|4EG2|A Chain A, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867859|pdb|4EG2|B Chain B, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867860|pdb|4EG2|C Chain C, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867861|pdb|4EG2|D Chain D, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867862|pdb|4EG2|E Chain E, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867863|pdb|4EG2|F Chain F, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867864|pdb|4EG2|G Chain G, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
gi|385867865|pdb|4EG2|H Chain H, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From
Vibrio Cholerae In Complex With Zinc And Uridine
Length = 298
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 144/281 (51%), Gaps = 26/281 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N E
Sbjct: 35 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANXE 94
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ E + + ++ +PCGHCRQF EL S + I +
Sbjct: 95 FTGAQLGQTVHAEQCAISHAWXKGEKGVADITINFSPCGHCRQFXNELTTASSLKIQLP- 153
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 154 ----KRAAKTLQEYLPESFGPADLGID-----------SGLXSPVNHGK---TSDDDEEL 195
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL G
Sbjct: 196 IQQALRAXNISHSPYTQNFSGVALKXRSGAIYLGAYAENAAFNPSLPPLQVALAQAXXXG 255
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
S +E I AAALVE + + L+VI+P
Sbjct: 256 ES------FEDIEAAALVESATGKISHLADTQATLEVINPD 290
>gi|157156119|ref|YP_001463494.1| cytidine deaminase [Escherichia coli E24377A]
gi|191165451|ref|ZP_03027293.1| cytidine deaminase [Escherichia coli B7A]
gi|300821754|ref|ZP_07101899.1| cytidine deaminase [Escherichia coli MS 119-7]
gi|300926245|ref|ZP_07142048.1| cytidine deaminase [Escherichia coli MS 182-1]
gi|301328622|ref|ZP_07221683.1| cytidine deaminase [Escherichia coli MS 78-1]
gi|309793021|ref|ZP_07687449.1| cytidine deaminase [Escherichia coli MS 145-7]
gi|331668842|ref|ZP_08369690.1| cytidine deaminase [Escherichia coli TA271]
gi|331678091|ref|ZP_08378766.1| cytidine deaminase [Escherichia coli H591]
gi|332278703|ref|ZP_08391116.1| cytidine deaminase [Shigella sp. D9]
gi|417222200|ref|ZP_12025640.1| cytidine deaminase [Escherichia coli 96.154]
gi|417270273|ref|ZP_12057633.1| cytidine deaminase [Escherichia coli 3.3884]
gi|417602735|ref|ZP_12253305.1| cytidine deaminase [Escherichia coli STEC_94C]
gi|418943715|ref|ZP_13496875.1| cytidine deaminase [Escherichia coli O157:H43 str. T22]
gi|419210295|ref|ZP_13753375.1| cytidine deaminase [Escherichia coli DEC8C]
gi|419370647|ref|ZP_13911766.1| cytidine deaminase [Escherichia coli DEC14A]
gi|419875152|ref|ZP_14397032.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9534]
gi|420104270|ref|ZP_14614995.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9455]
gi|420106406|ref|ZP_14616816.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9553]
gi|422762391|ref|ZP_16816148.1| cytidine deaminase [Escherichia coli E1167]
gi|422777436|ref|ZP_16831088.1| cytidine deaminase [Escherichia coli H120]
gi|422956483|ref|ZP_16968957.1| cytidine deaminase [Escherichia coli H494]
gi|423706190|ref|ZP_17680573.1| cytidine deaminase [Escherichia coli B799]
gi|424761513|ref|ZP_18189085.1| cytidine deaminase [Escherichia coli O111:H11 str. CFSAN001630]
gi|432377314|ref|ZP_19620305.1| cytidine deaminase [Escherichia coli KTE12]
gi|432835133|ref|ZP_20068672.1| cytidine deaminase [Escherichia coli KTE136]
gi|450218301|ref|ZP_21895865.1| cytidine deaminase [Escherichia coli O08]
gi|167006531|sp|A7ZNW5.1|CDD_ECO24 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|157078149|gb|ABV17857.1| cytidine deaminase [Escherichia coli E24377A]
gi|190904614|gb|EDV64321.1| cytidine deaminase [Escherichia coli B7A]
gi|300417674|gb|EFK00985.1| cytidine deaminase [Escherichia coli MS 182-1]
gi|300525596|gb|EFK46665.1| cytidine deaminase [Escherichia coli MS 119-7]
gi|300845014|gb|EFK72774.1| cytidine deaminase [Escherichia coli MS 78-1]
gi|308123307|gb|EFO60569.1| cytidine deaminase [Escherichia coli MS 145-7]
gi|323944959|gb|EGB41024.1| cytidine deaminase [Escherichia coli H120]
gi|324118017|gb|EGC11916.1| cytidine deaminase [Escherichia coli E1167]
gi|331064036|gb|EGI35947.1| cytidine deaminase [Escherichia coli TA271]
gi|331074551|gb|EGI45871.1| cytidine deaminase [Escherichia coli H591]
gi|332101055|gb|EGJ04401.1| cytidine deaminase [Shigella sp. D9]
gi|345350401|gb|EGW82676.1| cytidine deaminase [Escherichia coli STEC_94C]
gi|371600018|gb|EHN88796.1| cytidine deaminase [Escherichia coli H494]
gi|375320983|gb|EHS66868.1| cytidine deaminase [Escherichia coli O157:H43 str. T22]
gi|378054085|gb|EHW16371.1| cytidine deaminase [Escherichia coli DEC8C]
gi|378217241|gb|EHX77520.1| cytidine deaminase [Escherichia coli DEC14A]
gi|385712074|gb|EIG49029.1| cytidine deaminase [Escherichia coli B799]
gi|386202002|gb|EII00993.1| cytidine deaminase [Escherichia coli 96.154]
gi|386229078|gb|EII56434.1| cytidine deaminase [Escherichia coli 3.3884]
gi|388349521|gb|EIL14999.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9534]
gi|394404629|gb|EJE79980.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9455]
gi|394416219|gb|EJE90026.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9553]
gi|421943533|gb|EKU00816.1| cytidine deaminase [Escherichia coli O111:H11 str. CFSAN001630]
gi|430898613|gb|ELC20746.1| cytidine deaminase [Escherichia coli KTE12]
gi|431385493|gb|ELG69480.1| cytidine deaminase [Escherichia coli KTE136]
gi|449317919|gb|EMD08001.1| cytidine deaminase [Escherichia coli O08]
Length = 294
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L E DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAENADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|82777374|ref|YP_403723.1| cytidine deaminase [Shigella dysenteriae Sd197]
gi|309788026|ref|ZP_07682635.1| cytidine deaminase [Shigella dysenteriae 1617]
gi|85540971|sp|Q32EM3.1|CDD_SHIDS RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|81241522|gb|ABB62232.1| cytidine/deoxycytidine deaminase [Shigella dysenteriae Sd197]
gi|308924160|gb|EFP69658.1| cytidine deaminase [Shigella dysenteriae 1617]
Length = 294
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 131/242 (54%), Gaps = 25/242 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V+
Sbjct: 67 PLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL++
Sbjct: 127 TPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLMDE 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ GSY
Sbjct: 180 QDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A L+
Sbjct: 228 AENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|387888676|ref|YP_006318974.1| cytidine deaminase Cdd [Escherichia blattae DSM 4481]
gi|414592743|ref|ZP_11442392.1| cytidine deaminase [Escherichia blattae NBRC 105725]
gi|386923509|gb|AFJ46463.1| cytidine deaminase Cdd [Escherichia blattae DSM 4481]
gi|403196224|dbj|GAB80044.1| cytidine deaminase [Escherichia blattae NBRC 105725]
Length = 294
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 150/280 (53%), Gaps = 31/280 (11%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ AA + Q+SGL L L+ A A IS F+VGAV G SG ++LG N+E
Sbjct: 32 MFSAATVAQLKQRSGLDDNALAFALLPLAAACAHTAISHFNVGAVARGVSGNLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
FPG + Q+IHAEQ IT+ + E +L + V+ PCGHCRQF+ EL + + + I +
Sbjct: 92 FPGTTMQQTIHAEQSAITHAWMRGERQLTDITVNYTPCGHCRQFMNELNSGTGLAIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R+ L H LPD FGP DL + LLL+ +G+ + L
Sbjct: 152 -----RQPDTLGHYLPDAFGPRDL--EITTLLLDEVDHGL------------RGEGDALA 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAG 245
AA+ AAN+SHAPYS PSGVA+ +G GSY E+AAYNPSL P+QAAL +A+L
Sbjct: 193 QAAIAAANRSHAPYSDSPSGVALEMKDGTRVTGSYAENAAYNPSLPPLQAALNLAWLT-- 250
Query: 246 GSGGGGGGYE--RIVAAALVEKEDAVVRQEHAARLLLQVI 283
GY+ I A L E+ A++ Q A L+ +
Sbjct: 251 -------GYQPRDIRRAVLAERASALLVQWDATVATLKSL 283
>gi|441502057|ref|ZP_20984070.1| Cytidine deaminase [Photobacterium sp. AK15]
gi|441430496|gb|ELR67946.1| Cytidine deaminase [Photobacterium sp. AK15]
Length = 295
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 151/280 (53%), Gaps = 29/280 (10%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
V E AE+ S L V LLP V +A ++A PIS F+VGA+ G SGR++ G N+E
Sbjct: 37 VFEKLLAETHMTDSELRV-ALLP--VAAAYSVA--PISNFYVGAIVRGESGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E +Q + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 FVGASLSQTVHAEQSAISHAWVKGETGIQDITINYSPCGHCRQFMNELTTAKELVVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL D LL +G+ +TE +E ++
Sbjct: 151 ----ERAAKRLQEYLPESFGPADLNITDA--LLTKVDHGL----------KTEATEELVQ 194
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A +AAN +HAPY+K SGVA+ +G + G Y E+AA+NPSL P+Q AL+
Sbjct: 195 LAC-KAANSAHAPYTKNFSGVALKAKDGKTFVGMYAENAAFNPSLPPLQVALI------N 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
G + IV AALVE D+ + + L+ ++P
Sbjct: 248 MNMAGYPHADIVEAALVECSDSTISHLADTQNTLEALNPD 287
>gi|417624035|ref|ZP_12274334.1| cytidine deaminase [Escherichia coli STEC_H.1.8]
gi|345376996|gb|EGX08928.1| cytidine deaminase [Escherichia coli STEC_H.1.8]
Length = 294
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEEALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + ++ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLELRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|261252838|ref|ZP_05945411.1| cytidine deaminase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417952798|ref|ZP_12595849.1| cytidine deaminase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260936229|gb|EEX92218.1| cytidine deaminase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342818405|gb|EGU53271.1| cytidine deaminase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 295
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 144/274 (52%), Gaps = 24/274 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
E + SGL +L L+ A + P+S F+VGA+ G SG+++ G NVEF G+ L
Sbjct: 39 EQLLAISGLEDAELRVALLPFAAAYSYAPLSNFYVGAIVRGLSGKLYFGANVEFDGVQLG 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL + I + ER
Sbjct: 99 QTVHAEQSAISHAWMKGEQGVADITINFSPCGHCRQFMNELSTADKLQIQLP-----ERD 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGP DL + + N+ +G+ + ++ +L AAL
Sbjct: 154 SKSLQEYLPESFGPADL----------GITSALMTNIDHGKQSQEDDEVLQLAIAAL--- 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGG 253
N+SHAPY+ SG+A+ G +Y+G+Y E+AA+NPSL P+Q AL+ L
Sbjct: 201 NRSHAPYTHNLSGIALKMANGKVYQGAYAENAAFNPSLPPLQVALIQLLL------DRQK 254
Query: 254 YERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + + L+ ++P
Sbjct: 255 FEDIESAALVEVSEGTISHLATTQSTLEALNPDI 288
>gi|420373810|ref|ZP_14873873.1| cytidine deaminase [Shigella flexneri 1235-66]
gi|391316833|gb|EIQ74218.1| cytidine deaminase [Shigella flexneri 1235-66]
Length = 294
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 146/277 (52%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A AR P+S F+VGA+ G SG + GGN+E
Sbjct: 32 MLTAEQVSLLKRESGLDEDALAFALLPLAAACARTPLSNFNVGAISRGISGTWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R+ H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----REPHALRDYLPDAFGPKDLDIK--TLLMDDQDHGFALQ------------GDALT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+ H PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAIAAANRCHMPYSKSPSGVALECKDGQIFSGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L +
Sbjct: 252 Y-----DYPDIQRAVLAEKADAALIQWDATSATLNAL 283
>gi|417841690|ref|ZP_12487793.1| Cytidine deaminase [Haemophilus haemolyticus M19501]
gi|341948911|gb|EGT75526.1| Cytidine deaminase [Haemophilus haemolyticus M19501]
Length = 292
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 146/281 (51%), Gaps = 26/281 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ E + + LT L+L L+ A T + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVEQLCRDFKLTPLKLAMHLLPIAATYSHTAISHFNVGAIAIGEQGDFYFGANQEFSNS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD V LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAVHLLAEENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
ERIV A EK + + A LL + S K E++
Sbjct: 253 KLTDIERIVMA---EKALKLSHKTMAEALLSTLTSVKLEYH 290
>gi|401676366|ref|ZP_10808351.1| cytidine deaminase [Enterobacter sp. SST3]
gi|400216405|gb|EJO47306.1| cytidine deaminase [Enterobacter sp. SST3]
Length = 294
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 127/241 (52%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKALSAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L+ LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLQLR-----INLPGRAPHTLADYLPDAFGPKDLEIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + + L AA+ AANKSH PYS PSGVA+ +G I+ GSY
Sbjct: 181 DHGFALS------------GDDLSQAAIAAANKSHTPYSTSPSGVALQCRDGRIFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL G Y I A L E DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGALNLL------SLNGYDYPDIQRAILAEIADAPLIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|424800308|ref|ZP_18225850.1| Cytidine deaminase [Cronobacter sakazakii 696]
gi|423236029|emb|CCK07720.1| Cytidine deaminase [Cronobacter sakazakii 696]
Length = 294
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 146/283 (51%), Gaps = 37/283 (13%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ GGN+E
Sbjct: 32 MLSAEQVADVRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGNLYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 145
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL D+ L I +TEN L
Sbjct: 146 RINLPGRAPSQLGDYLPDAFGPRDL---DIRTL----------------IFDTENHGYAL 186
Query: 186 KYAALE-----AANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA 240
K AL AAN+SHAPYS+ PSG+AI +G I+ GSY E+AA+NPSL P+QAAL
Sbjct: 187 KGDALTQAAIAAANRSHAPYSQSPSGLAIETRDGEIFTGSYAENAAFNPSLPPLQAALNL 246
Query: 241 YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I AL E++DA + Q A L+ +
Sbjct: 247 MSL------NGYAWADIKRIALAERDDATIVQRDATAATLKAL 283
>gi|415840675|ref|ZP_11522103.1| cytidine deaminase [Escherichia coli RN587/1]
gi|417280327|ref|ZP_12067627.1| cytidine deaminase [Escherichia coli 3003]
gi|425278436|ref|ZP_18669682.1| cytidine deaminase [Escherichia coli ARS4.2123]
gi|323188132|gb|EFZ73427.1| cytidine deaminase [Escherichia coli RN587/1]
gi|386244656|gb|EII86386.1| cytidine deaminase [Escherichia coli 3003]
gi|408201939|gb|EKI27073.1| cytidine deaminase [Escherichia coli ARS4.2123]
Length = 294
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + + H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----HEAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|251792210|ref|YP_003006930.1| cytidine deaminase [Aggregatibacter aphrophilus NJ8700]
gi|422337916|ref|ZP_16418885.1| cytidine deaminase [Aggregatibacter aphrophilus F0387]
gi|247533597|gb|ACS96843.1| cytidine deaminase [Aggregatibacter aphrophilus NJ8700]
gi|353344922|gb|EHB89222.1| cytidine deaminase [Aggregatibacter aphrophilus F0387]
Length = 298
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 148/287 (51%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K LTV QL L+ A A PIS F+VGA+ G SG + G
Sbjct: 39 PHFAVQ-----HLCNKYQLTVQQLALALLPIAACYATTPISNFNVGAITTGVSGNFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E ++ + V+ PCGHCRQF+ EL ++ I
Sbjct: 94 NQEFSKTDIQQTIHAEQSTISHAWMRGEKQITDITVNYTPCGHCRQFMNELNGADNLKIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +++ L LPD FGP +L ++ L LL+ H N ++ N TE+P
Sbjct: 154 LP-----HSQHNLLHQYLPDAFGPKNL---NIHLHLLDQHDNELTLN--------TEDP- 196
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ AL AN++HAPYSK GVAI + IY GSY E+AA+NPSL +Q AL +
Sbjct: 197 --VTAQALNMANQAHAPYSKTFHGVAIQTQDKQIYHGSYAENAAFNPSLPALQVALNHLI 254
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+G + I +VEK ++ + A LL + + K E+
Sbjct: 255 LSGEE------VQNIARVVMVEKSASLSYKAMAEELLGTLANVKLEY 295
>gi|403057961|ref|YP_006646178.1| cytidine deaminase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402805287|gb|AFR02925.1| cytidine deaminase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 296
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 134/240 (55%), Gaps = 26/240 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ G SG +LG N+EF + L Q++HAEQ +++ + E L+ + V+
Sbjct: 67 PISNFQVGAIAQGLSGNFYLGANMEFSAVQLQQTVHAEQSAVSHAWMRNERGLRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLE 160
PCGHCRQF+ ELRN + + I + R+ LSH LPD FGP DL +D LL++
Sbjct: 127 TPCGHCRQFMNELRNAASLRIQLPG-----RQPAVLSHYLPDSFGPVDLHIDT---LLMD 178
Query: 161 THQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGS 220
+G + N AL+AAN+SHAPYSK SG+A+ GNIY G
Sbjct: 179 DVNHGATLQNVNAL-----------ARRALDAANRSHAPYSKAISGIALETSSGNIYTGR 227
Query: 221 YMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
Y E+AA+NPSL P+Q AL AG + I AA+VE+ AVV ++++L
Sbjct: 228 YAENAAFNPSLPPLQVALNLMNLAGDAPC------TIKHAAVVERRHAVVSHWAISQIML 281
>gi|15832289|ref|NP_311062.1| cytidine deaminase [Escherichia coli O157:H7 str. Sakai]
gi|168750523|ref|ZP_02775545.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4113]
gi|168757725|ref|ZP_02782732.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4401]
gi|168763799|ref|ZP_02788806.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4501]
gi|168767756|ref|ZP_02792763.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4486]
gi|168773146|ref|ZP_02798153.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4196]
gi|168779986|ref|ZP_02804993.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4076]
gi|168788953|ref|ZP_02813960.1| cytidine deaminase [Escherichia coli O157:H7 str. EC869]
gi|168801168|ref|ZP_02826175.1| cytidine deaminase [Escherichia coli O157:H7 str. EC508]
gi|195935519|ref|ZP_03080901.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4024]
gi|208809050|ref|ZP_03251387.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4206]
gi|208812889|ref|ZP_03254218.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4045]
gi|208821241|ref|ZP_03261561.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4042]
gi|209397721|ref|YP_002271552.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4115]
gi|217327797|ref|ZP_03443880.1| cytidine deaminase [Escherichia coli O157:H7 str. TW14588]
gi|254794042|ref|YP_003078879.1| cytidine deaminase [Escherichia coli O157:H7 str. TW14359]
gi|261223398|ref|ZP_05937679.1| cytidine/deoxycytidine deaminase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259052|ref|ZP_05951585.1| cytidine/deoxycytidine deaminase [Escherichia coli O157:H7 str.
FRIK966]
gi|291283397|ref|YP_003500215.1| Cytidine deaminase [Escherichia coli O55:H7 str. CB9615]
gi|387507533|ref|YP_006159789.1| cytidine deaminase [Escherichia coli O55:H7 str. RM12579]
gi|387883366|ref|YP_006313668.1| cytidine deaminase [Escherichia coli Xuzhou21]
gi|416310815|ref|ZP_11656550.1| Cytidine deaminase [Escherichia coli O157:H7 str. 1044]
gi|416318287|ref|ZP_11660997.1| Cytidine deaminase [Escherichia coli O157:H7 str. EC1212]
gi|416330484|ref|ZP_11669434.1| Cytidine deaminase [Escherichia coli O157:H7 str. 1125]
gi|416775379|ref|ZP_11874269.1| cytidine deaminase [Escherichia coli O157:H7 str. G5101]
gi|416787062|ref|ZP_11879179.1| cytidine deaminase [Escherichia coli O157:H- str. 493-89]
gi|416798678|ref|ZP_11884096.1| cytidine deaminase [Escherichia coli O157:H- str. H 2687]
gi|416809093|ref|ZP_11888780.1| cytidine deaminase [Escherichia coli O55:H7 str. 3256-97]
gi|416819560|ref|ZP_11893338.1| cytidine deaminase [Escherichia coli O55:H7 str. USDA 5905]
gi|416830486|ref|ZP_11898626.1| cytidine deaminase [Escherichia coli O157:H7 str. LSU-61]
gi|419046516|ref|ZP_13593453.1| cytidine deaminase [Escherichia coli DEC3A]
gi|419051856|ref|ZP_13598728.1| cytidine deaminase [Escherichia coli DEC3B]
gi|419057884|ref|ZP_13604690.1| cytidine deaminase [Escherichia coli DEC3C]
gi|419063353|ref|ZP_13610081.1| cytidine deaminase [Escherichia coli DEC3D]
gi|419070248|ref|ZP_13615872.1| cytidine deaminase [Escherichia coli DEC3E]
gi|419076209|ref|ZP_13621728.1| cytidine deaminase [Escherichia coli DEC3F]
gi|419081347|ref|ZP_13626795.1| cytidine deaminase [Escherichia coli DEC4A]
gi|419087117|ref|ZP_13632475.1| cytidine deaminase [Escherichia coli DEC4B]
gi|419093097|ref|ZP_13638383.1| cytidine deaminase [Escherichia coli DEC4C]
gi|419098834|ref|ZP_13644034.1| cytidine deaminase [Escherichia coli DEC4D]
gi|419104705|ref|ZP_13649834.1| cytidine deaminase [Escherichia coli DEC4E]
gi|419110161|ref|ZP_13655220.1| cytidine deaminase [Escherichia coli DEC4F]
gi|419115462|ref|ZP_13660481.1| cytidine deaminase [Escherichia coli DEC5A]
gi|419121105|ref|ZP_13666063.1| cytidine deaminase [Escherichia coli DEC5B]
gi|419126580|ref|ZP_13671466.1| cytidine deaminase [Escherichia coli DEC5C]
gi|419132157|ref|ZP_13676995.1| cytidine deaminase [Escherichia coli DEC5D]
gi|419137190|ref|ZP_13681986.1| cytidine deaminase [Escherichia coli DEC5E]
gi|420270832|ref|ZP_14773190.1| cytidine deaminase [Escherichia coli PA22]
gi|420276161|ref|ZP_14778445.1| cytidine deaminase [Escherichia coli PA40]
gi|420281427|ref|ZP_14783665.1| cytidine deaminase [Escherichia coli TW06591]
gi|420287513|ref|ZP_14789704.1| cytidine deaminase [Escherichia coli TW10246]
gi|420293096|ref|ZP_14795219.1| cytidine deaminase [Escherichia coli TW11039]
gi|420298970|ref|ZP_14801019.1| cytidine deaminase [Escherichia coli TW09109]
gi|420304797|ref|ZP_14806793.1| cytidine deaminase [Escherichia coli TW10119]
gi|420310696|ref|ZP_14812629.1| cytidine deaminase [Escherichia coli EC1738]
gi|420316108|ref|ZP_14817984.1| cytidine deaminase [Escherichia coli EC1734]
gi|421813061|ref|ZP_16248785.1| cytidine deaminase [Escherichia coli 8.0416]
gi|421818950|ref|ZP_16254448.1| cytidine deaminase [Escherichia coli 10.0821]
gi|421824773|ref|ZP_16260140.1| cytidine deaminase [Escherichia coli FRIK920]
gi|421831673|ref|ZP_16266960.1| cytidine deaminase [Escherichia coli PA7]
gi|423725735|ref|ZP_17699845.1| cytidine deaminase [Escherichia coli PA31]
gi|424078175|ref|ZP_17815179.1| cytidine deaminase [Escherichia coli FDA505]
gi|424084630|ref|ZP_17821140.1| cytidine deaminase [Escherichia coli FDA517]
gi|424091115|ref|ZP_17827060.1| cytidine deaminase [Escherichia coli FRIK1996]
gi|424097686|ref|ZP_17833023.1| cytidine deaminase [Escherichia coli FRIK1985]
gi|424103888|ref|ZP_17838687.1| cytidine deaminase [Escherichia coli FRIK1990]
gi|424110590|ref|ZP_17844848.1| cytidine deaminase [Escherichia coli 93-001]
gi|424116481|ref|ZP_17850345.1| cytidine deaminase [Escherichia coli PA3]
gi|424122696|ref|ZP_17856044.1| cytidine deaminase [Escherichia coli PA5]
gi|424128832|ref|ZP_17861756.1| cytidine deaminase [Escherichia coli PA9]
gi|424135086|ref|ZP_17867572.1| cytidine deaminase [Escherichia coli PA10]
gi|424141685|ref|ZP_17873598.1| cytidine deaminase [Escherichia coli PA14]
gi|424148117|ref|ZP_17879515.1| cytidine deaminase [Escherichia coli PA15]
gi|424153992|ref|ZP_17884968.1| cytidine deaminase [Escherichia coli PA24]
gi|424247817|ref|ZP_17890452.1| cytidine deaminase [Escherichia coli PA25]
gi|424324352|ref|ZP_17896373.1| cytidine deaminase [Escherichia coli PA28]
gi|424450377|ref|ZP_17902102.1| cytidine deaminase [Escherichia coli PA32]
gi|424456575|ref|ZP_17907737.1| cytidine deaminase [Escherichia coli PA33]
gi|424462961|ref|ZP_17913441.1| cytidine deaminase [Escherichia coli PA39]
gi|424469324|ref|ZP_17919170.1| cytidine deaminase [Escherichia coli PA41]
gi|424475864|ref|ZP_17925207.1| cytidine deaminase [Escherichia coli PA42]
gi|424481619|ref|ZP_17930618.1| cytidine deaminase [Escherichia coli TW07945]
gi|424487764|ref|ZP_17936352.1| cytidine deaminase [Escherichia coli TW09098]
gi|424494351|ref|ZP_17942129.1| cytidine deaminase [Escherichia coli TW09195]
gi|424501134|ref|ZP_17948058.1| cytidine deaminase [Escherichia coli EC4203]
gi|424507368|ref|ZP_17953798.1| cytidine deaminase [Escherichia coli EC4196]
gi|424514691|ref|ZP_17959408.1| cytidine deaminase [Escherichia coli TW14313]
gi|424521014|ref|ZP_17965157.1| cytidine deaminase [Escherichia coli TW14301]
gi|424526850|ref|ZP_17970584.1| cytidine deaminase [Escherichia coli EC4421]
gi|424533010|ref|ZP_17976375.1| cytidine deaminase [Escherichia coli EC4422]
gi|424539075|ref|ZP_17982044.1| cytidine deaminase [Escherichia coli EC4013]
gi|424545094|ref|ZP_17987543.1| cytidine deaminase [Escherichia coli EC4402]
gi|424551349|ref|ZP_17993233.1| cytidine deaminase [Escherichia coli EC4439]
gi|424557534|ref|ZP_17998971.1| cytidine deaminase [Escherichia coli EC4436]
gi|424563879|ref|ZP_18004899.1| cytidine deaminase [Escherichia coli EC4437]
gi|424570007|ref|ZP_18010592.1| cytidine deaminase [Escherichia coli EC4448]
gi|424576171|ref|ZP_18016274.1| cytidine deaminase [Escherichia coli EC1845]
gi|424582014|ref|ZP_18021683.1| cytidine deaminase [Escherichia coli EC1863]
gi|425098733|ref|ZP_18501485.1| cytidine deaminase [Escherichia coli 3.4870]
gi|425104862|ref|ZP_18507191.1| cytidine deaminase [Escherichia coli 5.2239]
gi|425110763|ref|ZP_18512699.1| cytidine deaminase [Escherichia coli 6.0172]
gi|425126662|ref|ZP_18527858.1| cytidine deaminase [Escherichia coli 8.0586]
gi|425132477|ref|ZP_18533341.1| cytidine deaminase [Escherichia coli 8.2524]
gi|425138946|ref|ZP_18539352.1| cytidine deaminase [Escherichia coli 10.0833]
gi|425144810|ref|ZP_18544819.1| cytidine deaminase [Escherichia coli 10.0869]
gi|425150854|ref|ZP_18550488.1| cytidine deaminase [Escherichia coli 88.0221]
gi|425156737|ref|ZP_18556018.1| cytidine deaminase [Escherichia coli PA34]
gi|425163175|ref|ZP_18562070.1| cytidine deaminase [Escherichia coli FDA506]
gi|425168839|ref|ZP_18567338.1| cytidine deaminase [Escherichia coli FDA507]
gi|425174974|ref|ZP_18573104.1| cytidine deaminase [Escherichia coli FDA504]
gi|425181005|ref|ZP_18578711.1| cytidine deaminase [Escherichia coli FRIK1999]
gi|425187268|ref|ZP_18584551.1| cytidine deaminase [Escherichia coli FRIK1997]
gi|425194040|ref|ZP_18590823.1| cytidine deaminase [Escherichia coli NE1487]
gi|425200473|ref|ZP_18596703.1| cytidine deaminase [Escherichia coli NE037]
gi|425206897|ref|ZP_18602709.1| cytidine deaminase [Escherichia coli FRIK2001]
gi|425212588|ref|ZP_18608009.1| cytidine deaminase [Escherichia coli PA4]
gi|425218702|ref|ZP_18613693.1| cytidine deaminase [Escherichia coli PA23]
gi|425225230|ref|ZP_18619731.1| cytidine deaminase [Escherichia coli PA49]
gi|425231594|ref|ZP_18625643.1| cytidine deaminase [Escherichia coli PA45]
gi|425237510|ref|ZP_18631240.1| cytidine deaminase [Escherichia coli TT12B]
gi|425243733|ref|ZP_18637053.1| cytidine deaminase [Escherichia coli MA6]
gi|425249853|ref|ZP_18642804.1| cytidine deaminase [Escherichia coli 5905]
gi|425255713|ref|ZP_18648248.1| cytidine deaminase [Escherichia coli CB7326]
gi|425261931|ref|ZP_18653961.1| cytidine deaminase [Escherichia coli EC96038]
gi|425267966|ref|ZP_18659610.1| cytidine deaminase [Escherichia coli 5412]
gi|425295402|ref|ZP_18685622.1| cytidine deaminase [Escherichia coli PA38]
gi|425312072|ref|ZP_18701274.1| cytidine deaminase [Escherichia coli EC1735]
gi|425318018|ref|ZP_18706828.1| cytidine deaminase [Escherichia coli EC1736]
gi|425324117|ref|ZP_18712507.1| cytidine deaminase [Escherichia coli EC1737]
gi|425330402|ref|ZP_18718291.1| cytidine deaminase [Escherichia coli EC1846]
gi|425336566|ref|ZP_18723973.1| cytidine deaminase [Escherichia coli EC1847]
gi|425342974|ref|ZP_18729891.1| cytidine deaminase [Escherichia coli EC1848]
gi|425348775|ref|ZP_18735274.1| cytidine deaminase [Escherichia coli EC1849]
gi|425355070|ref|ZP_18741160.1| cytidine deaminase [Escherichia coli EC1850]
gi|425361030|ref|ZP_18746703.1| cytidine deaminase [Escherichia coli EC1856]
gi|425367201|ref|ZP_18752399.1| cytidine deaminase [Escherichia coli EC1862]
gi|425373576|ref|ZP_18758242.1| cytidine deaminase [Escherichia coli EC1864]
gi|425386422|ref|ZP_18770002.1| cytidine deaminase [Escherichia coli EC1866]
gi|425393145|ref|ZP_18776275.1| cytidine deaminase [Escherichia coli EC1868]
gi|425399244|ref|ZP_18781974.1| cytidine deaminase [Escherichia coli EC1869]
gi|425405322|ref|ZP_18787578.1| cytidine deaminase [Escherichia coli EC1870]
gi|425411726|ref|ZP_18793517.1| cytidine deaminase [Escherichia coli NE098]
gi|425418057|ref|ZP_18799351.1| cytidine deaminase [Escherichia coli FRIK523]
gi|425429387|ref|ZP_18810013.1| cytidine deaminase [Escherichia coli 0.1304]
gi|428947757|ref|ZP_19020063.1| cytidine deaminase [Escherichia coli 88.1467]
gi|428953859|ref|ZP_19025674.1| cytidine deaminase [Escherichia coli 88.1042]
gi|428959793|ref|ZP_19031127.1| cytidine deaminase [Escherichia coli 89.0511]
gi|428966362|ref|ZP_19037140.1| cytidine deaminase [Escherichia coli 90.0091]
gi|428972300|ref|ZP_19042662.1| cytidine deaminase [Escherichia coli 90.0039]
gi|428978749|ref|ZP_19048593.1| cytidine deaminase [Escherichia coli 90.2281]
gi|428984541|ref|ZP_19053953.1| cytidine deaminase [Escherichia coli 93.0055]
gi|428990617|ref|ZP_19059624.1| cytidine deaminase [Escherichia coli 93.0056]
gi|428996417|ref|ZP_19065046.1| cytidine deaminase [Escherichia coli 94.0618]
gi|429002656|ref|ZP_19070817.1| cytidine deaminase [Escherichia coli 95.0183]
gi|429008798|ref|ZP_19076342.1| cytidine deaminase [Escherichia coli 95.1288]
gi|429015244|ref|ZP_19082165.1| cytidine deaminase [Escherichia coli 95.0943]
gi|429021261|ref|ZP_19087800.1| cytidine deaminase [Escherichia coli 96.0428]
gi|429027206|ref|ZP_19093239.1| cytidine deaminase [Escherichia coli 96.0427]
gi|429033415|ref|ZP_19098957.1| cytidine deaminase [Escherichia coli 96.0939]
gi|429039514|ref|ZP_19104647.1| cytidine deaminase [Escherichia coli 96.0932]
gi|429045393|ref|ZP_19110124.1| cytidine deaminase [Escherichia coli 96.0107]
gi|429050812|ref|ZP_19115390.1| cytidine deaminase [Escherichia coli 97.0003]
gi|429061688|ref|ZP_19125727.1| cytidine deaminase [Escherichia coli 97.0007]
gi|429067996|ref|ZP_19131480.1| cytidine deaminase [Escherichia coli 99.0672]
gi|429073897|ref|ZP_19137161.1| cytidine deaminase [Escherichia coli 99.0678]
gi|429079095|ref|ZP_19142242.1| cytidine deaminase [Escherichia coli 99.0713]
gi|429827096|ref|ZP_19358174.1| cytidine deaminase [Escherichia coli 96.0109]
gi|429833423|ref|ZP_19363821.1| cytidine deaminase [Escherichia coli 97.0010]
gi|444925684|ref|ZP_21245000.1| cytidine deaminase [Escherichia coli 09BKT078844]
gi|444931388|ref|ZP_21250445.1| cytidine deaminase [Escherichia coli 99.0814]
gi|444936797|ref|ZP_21255592.1| cytidine deaminase [Escherichia coli 99.0815]
gi|444942425|ref|ZP_21260961.1| cytidine deaminase [Escherichia coli 99.0816]
gi|444947977|ref|ZP_21266299.1| cytidine deaminase [Escherichia coli 99.0839]
gi|444953494|ref|ZP_21271605.1| cytidine deaminase [Escherichia coli 99.0848]
gi|444958967|ref|ZP_21276836.1| cytidine deaminase [Escherichia coli 99.1753]
gi|444964161|ref|ZP_21281793.1| cytidine deaminase [Escherichia coli 99.1775]
gi|444970115|ref|ZP_21287491.1| cytidine deaminase [Escherichia coli 99.1793]
gi|444975376|ref|ZP_21292522.1| cytidine deaminase [Escherichia coli 99.1805]
gi|444980848|ref|ZP_21297767.1| cytidine deaminase [Escherichia coli ATCC 700728]
gi|444986198|ref|ZP_21302991.1| cytidine deaminase [Escherichia coli PA11]
gi|444991514|ref|ZP_21308170.1| cytidine deaminase [Escherichia coli PA19]
gi|444996805|ref|ZP_21313316.1| cytidine deaminase [Escherichia coli PA13]
gi|445002361|ref|ZP_21318761.1| cytidine deaminase [Escherichia coli PA2]
gi|445007861|ref|ZP_21324114.1| cytidine deaminase [Escherichia coli PA47]
gi|445012893|ref|ZP_21329011.1| cytidine deaminase [Escherichia coli PA48]
gi|445018769|ref|ZP_21334745.1| cytidine deaminase [Escherichia coli PA8]
gi|445024281|ref|ZP_21340116.1| cytidine deaminase [Escherichia coli 7.1982]
gi|445029554|ref|ZP_21345242.1| cytidine deaminase [Escherichia coli 99.1781]
gi|445035014|ref|ZP_21350556.1| cytidine deaminase [Escherichia coli 99.1762]
gi|445040640|ref|ZP_21356029.1| cytidine deaminase [Escherichia coli PA35]
gi|445045837|ref|ZP_21361101.1| cytidine deaminase [Escherichia coli 3.4880]
gi|445057170|ref|ZP_21372040.1| cytidine deaminase [Escherichia coli 99.0670]
gi|452971349|ref|ZP_21969576.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4009]
gi|85681029|sp|Q8X648.3|CDD_ECO57 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701673|sp|B5YW75.1|CDD_ECO5E RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|13362504|dbj|BAB36458.1| cytidine/deoxycytidine deaminase [Escherichia coli O157:H7 str.
Sakai]
gi|187771285|gb|EDU35129.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4196]
gi|188015351|gb|EDU53473.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4113]
gi|189001890|gb|EDU70876.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4076]
gi|189355346|gb|EDU73765.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4401]
gi|189362904|gb|EDU81323.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4486]
gi|189366054|gb|EDU84470.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4501]
gi|189371363|gb|EDU89779.1| cytidine deaminase [Escherichia coli O157:H7 str. EC869]
gi|189376625|gb|EDU95041.1| cytidine deaminase [Escherichia coli O157:H7 str. EC508]
gi|208728851|gb|EDZ78452.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4206]
gi|208734166|gb|EDZ82853.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4045]
gi|208741364|gb|EDZ89046.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4042]
gi|209159121|gb|ACI36554.1| cytidine deaminase [Escherichia coli O157:H7 str. EC4115]
gi|209766318|gb|ACI81471.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|209766320|gb|ACI81472.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|209766322|gb|ACI81473.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|209766324|gb|ACI81474.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|209766326|gb|ACI81475.1| cytidine/deoxycytidine deaminase [Escherichia coli]
gi|217320164|gb|EEC28589.1| cytidine deaminase [Escherichia coli O157:H7 str. TW14588]
gi|254593442|gb|ACT72803.1| cytidine/deoxycytidine deaminase [Escherichia coli O157:H7 str.
TW14359]
gi|290763270|gb|ADD57231.1| Cytidine deaminase [Escherichia coli O55:H7 str. CB9615]
gi|320192234|gb|EFW66879.1| Cytidine deaminase [Escherichia coli O157:H7 str. EC1212]
gi|320641214|gb|EFX10692.1| cytidine deaminase [Escherichia coli O157:H7 str. G5101]
gi|320646602|gb|EFX15513.1| cytidine deaminase [Escherichia coli O157:H- str. 493-89]
gi|320651857|gb|EFX20232.1| cytidine deaminase [Escherichia coli O157:H- str. H 2687]
gi|320657581|gb|EFX25379.1| cytidine deaminase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663187|gb|EFX30496.1| cytidine deaminase [Escherichia coli O55:H7 str. USDA 5905]
gi|320667938|gb|EFX34841.1| cytidine deaminase [Escherichia coli O157:H7 str. LSU-61]
gi|326339493|gb|EGD63304.1| Cytidine deaminase [Escherichia coli O157:H7 str. 1125]
gi|326343954|gb|EGD67715.1| Cytidine deaminase [Escherichia coli O157:H7 str. 1044]
gi|374359527|gb|AEZ41234.1| cytidine deaminase [Escherichia coli O55:H7 str. RM12579]
gi|377893346|gb|EHU57785.1| cytidine deaminase [Escherichia coli DEC3A]
gi|377893541|gb|EHU57975.1| cytidine deaminase [Escherichia coli DEC3B]
gi|377905154|gb|EHU69428.1| cytidine deaminase [Escherichia coli DEC3C]
gi|377909828|gb|EHU74026.1| cytidine deaminase [Escherichia coli DEC3D]
gi|377912458|gb|EHU76617.1| cytidine deaminase [Escherichia coli DEC3E]
gi|377921566|gb|EHU85562.1| cytidine deaminase [Escherichia coli DEC3F]
gi|377925977|gb|EHU89912.1| cytidine deaminase [Escherichia coli DEC4A]
gi|377930645|gb|EHU94525.1| cytidine deaminase [Escherichia coli DEC4B]
gi|377942236|gb|EHV05971.1| cytidine deaminase [Escherichia coli DEC4C]
gi|377942687|gb|EHV06420.1| cytidine deaminase [Escherichia coli DEC4D]
gi|377947188|gb|EHV10855.1| cytidine deaminase [Escherichia coli DEC4E]
gi|377957439|gb|EHV20971.1| cytidine deaminase [Escherichia coli DEC4F]
gi|377961257|gb|EHV24731.1| cytidine deaminase [Escherichia coli DEC5A]
gi|377967046|gb|EHV30453.1| cytidine deaminase [Escherichia coli DEC5B]
gi|377975045|gb|EHV38367.1| cytidine deaminase [Escherichia coli DEC5C]
gi|377975724|gb|EHV39041.1| cytidine deaminase [Escherichia coli DEC5D]
gi|377984183|gb|EHV47418.1| cytidine deaminase [Escherichia coli DEC5E]
gi|386796824|gb|AFJ29858.1| cytidine deaminase [Escherichia coli Xuzhou21]
gi|390641830|gb|EIN21254.1| cytidine deaminase [Escherichia coli FRIK1996]
gi|390643111|gb|EIN22474.1| cytidine deaminase [Escherichia coli FDA517]
gi|390644141|gb|EIN23434.1| cytidine deaminase [Escherichia coli FDA505]
gi|390660805|gb|EIN38495.1| cytidine deaminase [Escherichia coli 93-001]
gi|390662431|gb|EIN40035.1| cytidine deaminase [Escherichia coli FRIK1985]
gi|390664110|gb|EIN41572.1| cytidine deaminase [Escherichia coli FRIK1990]
gi|390677913|gb|EIN53913.1| cytidine deaminase [Escherichia coli PA3]
gi|390681126|gb|EIN56930.1| cytidine deaminase [Escherichia coli PA5]
gi|390683812|gb|EIN59464.1| cytidine deaminase [Escherichia coli PA9]
gi|390697034|gb|EIN71468.1| cytidine deaminase [Escherichia coli PA10]
gi|390701188|gb|EIN75443.1| cytidine deaminase [Escherichia coli PA15]
gi|390701786|gb|EIN76004.1| cytidine deaminase [Escherichia coli PA14]
gi|390714344|gb|EIN87258.1| cytidine deaminase [Escherichia coli PA22]
gi|390723108|gb|EIN95728.1| cytidine deaminase [Escherichia coli PA25]
gi|390724670|gb|EIN97219.1| cytidine deaminase [Escherichia coli PA24]
gi|390727903|gb|EIO00286.1| cytidine deaminase [Escherichia coli PA28]
gi|390743081|gb|EIO14068.1| cytidine deaminase [Escherichia coli PA31]
gi|390743307|gb|EIO14284.1| cytidine deaminase [Escherichia coli PA32]
gi|390745828|gb|EIO16608.1| cytidine deaminase [Escherichia coli PA33]
gi|390757571|gb|EIO27041.1| cytidine deaminase [Escherichia coli PA40]
gi|390767770|gb|EIO36836.1| cytidine deaminase [Escherichia coli PA41]
gi|390769176|gb|EIO38128.1| cytidine deaminase [Escherichia coli PA39]
gi|390769509|gb|EIO38436.1| cytidine deaminase [Escherichia coli PA42]
gi|390781714|gb|EIO49391.1| cytidine deaminase [Escherichia coli TW06591]
gi|390790270|gb|EIO57698.1| cytidine deaminase [Escherichia coli TW10246]
gi|390791383|gb|EIO58774.1| cytidine deaminase [Escherichia coli TW07945]
gi|390797182|gb|EIO64438.1| cytidine deaminase [Escherichia coli TW11039]
gi|390806579|gb|EIO73482.1| cytidine deaminase [Escherichia coli TW09098]
gi|390806665|gb|EIO73567.1| cytidine deaminase [Escherichia coli TW09109]
gi|390815819|gb|EIO82331.1| cytidine deaminase [Escherichia coli TW10119]
gi|390826270|gb|EIO92126.1| cytidine deaminase [Escherichia coli EC4203]
gi|390830913|gb|EIO96397.1| cytidine deaminase [Escherichia coli TW09195]
gi|390831721|gb|EIO97089.1| cytidine deaminase [Escherichia coli EC4196]
gi|390846314|gb|EIP09918.1| cytidine deaminase [Escherichia coli TW14301]
gi|390847426|gb|EIP10968.1| cytidine deaminase [Escherichia coli TW14313]
gi|390850915|gb|EIP14256.1| cytidine deaminase [Escherichia coli EC4421]
gi|390861616|gb|EIP23860.1| cytidine deaminase [Escherichia coli EC4422]
gi|390865818|gb|EIP27812.1| cytidine deaminase [Escherichia coli EC4013]
gi|390871138|gb|EIP32580.1| cytidine deaminase [Escherichia coli EC4402]
gi|390878861|gb|EIP39671.1| cytidine deaminase [Escherichia coli EC4439]
gi|390883916|gb|EIP44305.1| cytidine deaminase [Escherichia coli EC4436]
gi|390893911|gb|EIP53445.1| cytidine deaminase [Escherichia coli EC4437]
gi|390896170|gb|EIP55561.1| cytidine deaminase [Escherichia coli EC4448]
gi|390899975|gb|EIP59211.1| cytidine deaminase [Escherichia coli EC1738]
gi|390908098|gb|EIP66939.1| cytidine deaminase [Escherichia coli EC1734]
gi|390919519|gb|EIP77868.1| cytidine deaminase [Escherichia coli EC1863]
gi|390920488|gb|EIP78756.1| cytidine deaminase [Escherichia coli EC1845]
gi|408064045|gb|EKG98527.1| cytidine deaminase [Escherichia coli PA7]
gi|408067825|gb|EKH02253.1| cytidine deaminase [Escherichia coli FRIK920]
gi|408071121|gb|EKH05474.1| cytidine deaminase [Escherichia coli PA34]
gi|408078763|gb|EKH12891.1| cytidine deaminase [Escherichia coli FDA506]
gi|408083071|gb|EKH16989.1| cytidine deaminase [Escherichia coli FDA507]
gi|408091332|gb|EKH24563.1| cytidine deaminase [Escherichia coli FDA504]
gi|408097445|gb|EKH30336.1| cytidine deaminase [Escherichia coli FRIK1999]
gi|408104150|gb|EKH36472.1| cytidine deaminase [Escherichia coli FRIK1997]
gi|408108381|gb|EKH40384.1| cytidine deaminase [Escherichia coli NE1487]
gi|408115170|gb|EKH46636.1| cytidine deaminase [Escherichia coli NE037]
gi|408121214|gb|EKH52175.1| cytidine deaminase [Escherichia coli FRIK2001]
gi|408127751|gb|EKH58188.1| cytidine deaminase [Escherichia coli PA4]
gi|408138723|gb|EKH68379.1| cytidine deaminase [Escherichia coli PA23]
gi|408140410|gb|EKH69926.1| cytidine deaminase [Escherichia coli PA49]
gi|408145995|gb|EKH75138.1| cytidine deaminase [Escherichia coli PA45]
gi|408155351|gb|EKH83674.1| cytidine deaminase [Escherichia coli TT12B]
gi|408160012|gb|EKH88056.1| cytidine deaminase [Escherichia coli MA6]
gi|408164020|gb|EKH91860.1| cytidine deaminase [Escherichia coli 5905]
gi|408173486|gb|EKI00506.1| cytidine deaminase [Escherichia coli CB7326]
gi|408180598|gb|EKI07203.1| cytidine deaminase [Escherichia coli EC96038]
gi|408183027|gb|EKI09501.1| cytidine deaminase [Escherichia coli 5412]
gi|408217960|gb|EKI42194.1| cytidine deaminase [Escherichia coli PA38]
gi|408227620|gb|EKI51202.1| cytidine deaminase [Escherichia coli EC1735]
gi|408238722|gb|EKI61508.1| cytidine deaminase [Escherichia coli EC1736]
gi|408243086|gb|EKI65630.1| cytidine deaminase [Escherichia coli EC1737]
gi|408247464|gb|EKI69664.1| cytidine deaminase [Escherichia coli EC1846]
gi|408256547|gb|EKI77922.1| cytidine deaminase [Escherichia coli EC1847]
gi|408259249|gb|EKI80436.1| cytidine deaminase [Escherichia coli EC1848]
gi|408265642|gb|EKI86324.1| cytidine deaminase [Escherichia coli EC1849]
gi|408275010|gb|EKI94992.1| cytidine deaminase [Escherichia coli EC1850]
gi|408277226|gb|EKI97036.1| cytidine deaminase [Escherichia coli EC1856]
gi|408287061|gb|EKJ05957.1| cytidine deaminase [Escherichia coli EC1862]
gi|408291229|gb|EKJ09863.1| cytidine deaminase [Escherichia coli EC1864]
gi|408308345|gb|EKJ25615.1| cytidine deaminase [Escherichia coli EC1868]
gi|408308429|gb|EKJ25698.1| cytidine deaminase [Escherichia coli EC1866]
gi|408319439|gb|EKJ35575.1| cytidine deaminase [Escherichia coli EC1869]
gi|408326174|gb|EKJ41998.1| cytidine deaminase [Escherichia coli EC1870]
gi|408326815|gb|EKJ42584.1| cytidine deaminase [Escherichia coli NE098]
gi|408336953|gb|EKJ51701.1| cytidine deaminase [Escherichia coli FRIK523]
gi|408346640|gb|EKJ60926.1| cytidine deaminase [Escherichia coli 0.1304]
gi|408550153|gb|EKK27498.1| cytidine deaminase [Escherichia coli 5.2239]
gi|408550774|gb|EKK28090.1| cytidine deaminase [Escherichia coli 3.4870]
gi|408551332|gb|EKK28613.1| cytidine deaminase [Escherichia coli 6.0172]
gi|408570187|gb|EKK46167.1| cytidine deaminase [Escherichia coli 8.0586]
gi|408579844|gb|EKK55292.1| cytidine deaminase [Escherichia coli 10.0833]
gi|408581482|gb|EKK56817.1| cytidine deaminase [Escherichia coli 8.2524]
gi|408591531|gb|EKK65952.1| cytidine deaminase [Escherichia coli 10.0869]
gi|408596577|gb|EKK70702.1| cytidine deaminase [Escherichia coli 88.0221]
gi|408601367|gb|EKK75170.1| cytidine deaminase [Escherichia coli 8.0416]
gi|408612707|gb|EKK86041.1| cytidine deaminase [Escherichia coli 10.0821]
gi|427205008|gb|EKV75268.1| cytidine deaminase [Escherichia coli 88.1042]
gi|427207382|gb|EKV77551.1| cytidine deaminase [Escherichia coli 89.0511]
gi|427208616|gb|EKV78705.1| cytidine deaminase [Escherichia coli 88.1467]
gi|427222179|gb|EKV90971.1| cytidine deaminase [Escherichia coli 90.0091]
gi|427224723|gb|EKV93422.1| cytidine deaminase [Escherichia coli 90.2281]
gi|427228042|gb|EKV96526.1| cytidine deaminase [Escherichia coli 90.0039]
gi|427242245|gb|EKW09660.1| cytidine deaminase [Escherichia coli 93.0056]
gi|427242843|gb|EKW10240.1| cytidine deaminase [Escherichia coli 93.0055]
gi|427246398|gb|EKW13612.1| cytidine deaminase [Escherichia coli 94.0618]
gi|427261654|gb|EKW27571.1| cytidine deaminase [Escherichia coli 95.0183]
gi|427262220|gb|EKW28121.1| cytidine deaminase [Escherichia coli 95.0943]
gi|427264976|gb|EKW30603.1| cytidine deaminase [Escherichia coli 95.1288]
gi|427276823|gb|EKW41388.1| cytidine deaminase [Escherichia coli 96.0428]
gi|427279609|gb|EKW44020.1| cytidine deaminase [Escherichia coli 96.0427]
gi|427283377|gb|EKW47585.1| cytidine deaminase [Escherichia coli 96.0939]
gi|427292139|gb|EKW55495.1| cytidine deaminase [Escherichia coli 96.0932]
gi|427299485|gb|EKW62456.1| cytidine deaminase [Escherichia coli 96.0107]
gi|427300738|gb|EKW63663.1| cytidine deaminase [Escherichia coli 97.0003]
gi|427315974|gb|EKW77948.1| cytidine deaminase [Escherichia coli 97.0007]
gi|427319686|gb|EKW81489.1| cytidine deaminase [Escherichia coli 99.0672]
gi|427328503|gb|EKW89865.1| cytidine deaminase [Escherichia coli 99.0678]
gi|427329425|gb|EKW90751.1| cytidine deaminase [Escherichia coli 99.0713]
gi|429254170|gb|EKY38610.1| cytidine deaminase [Escherichia coli 96.0109]
gi|429255895|gb|EKY40176.1| cytidine deaminase [Escherichia coli 97.0010]
gi|444538625|gb|ELV18472.1| cytidine deaminase [Escherichia coli 99.0814]
gi|444540116|gb|ELV19815.1| cytidine deaminase [Escherichia coli 09BKT078844]
gi|444547775|gb|ELV26332.1| cytidine deaminase [Escherichia coli 99.0815]
gi|444557557|gb|ELV34883.1| cytidine deaminase [Escherichia coli 99.0839]
gi|444558838|gb|ELV36099.1| cytidine deaminase [Escherichia coli 99.0816]
gi|444563808|gb|ELV40784.1| cytidine deaminase [Escherichia coli 99.0848]
gi|444573486|gb|ELV49851.1| cytidine deaminase [Escherichia coli 99.1753]
gi|444577977|gb|ELV54070.1| cytidine deaminase [Escherichia coli 99.1775]
gi|444579668|gb|ELV55645.1| cytidine deaminase [Escherichia coli 99.1793]
gi|444593643|gb|ELV68850.1| cytidine deaminase [Escherichia coli ATCC 700728]
gi|444593903|gb|ELV69107.1| cytidine deaminase [Escherichia coli PA11]
gi|444596153|gb|ELV71236.1| cytidine deaminase [Escherichia coli 99.1805]
gi|444607361|gb|ELV81939.1| cytidine deaminase [Escherichia coli PA13]
gi|444607668|gb|ELV82236.1| cytidine deaminase [Escherichia coli PA19]
gi|444616220|gb|ELV90388.1| cytidine deaminase [Escherichia coli PA2]
gi|444624125|gb|ELV98030.1| cytidine deaminase [Escherichia coli PA47]
gi|444624535|gb|ELV98417.1| cytidine deaminase [Escherichia coli PA48]
gi|444630165|gb|ELW03830.1| cytidine deaminase [Escherichia coli PA8]
gi|444638985|gb|ELW12306.1| cytidine deaminase [Escherichia coli 7.1982]
gi|444641889|gb|ELW15105.1| cytidine deaminase [Escherichia coli 99.1781]
gi|444645518|gb|ELW18580.1| cytidine deaminase [Escherichia coli 99.1762]
gi|444654715|gb|ELW27362.1| cytidine deaminase [Escherichia coli PA35]
gi|444660134|gb|ELW32507.1| cytidine deaminase [Escherichia coli 3.4880]
gi|444669919|gb|ELW41853.1| cytidine deaminase [Escherichia coli 99.0670]
Length = 294
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L L D FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLADAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|157267365|ref|NP_288726.2| cytidine deaminase [Escherichia coli O157:H7 str. EDL933]
gi|169822941|gb|AAG57281.2|AE005446_9 cytidine/deoxycytidine deaminase [Escherichia coli O157:H7 str.
EDL933]
Length = 294
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L L D FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLADAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|350531558|ref|ZP_08910499.1| cytidine deaminase [Vibrio rotiferianus DAT722]
Length = 295
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 34/286 (11%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + + + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TISEQQFDELLNATNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ I +
Sbjct: 92 FFGVQLGQTVHAEQCAISHAWMKGEHGVKDITINYSPCGHCRQFMNELSTAKELKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETE-----NP 181
ER+ L H LP+ FGP DL + +G + E + +
Sbjct: 151 ----EREEKSLHHYLPEAFGPADL------------------GIESGLMAEVKHEFVYDE 188
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
+ L A+ A N SHAPY+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+
Sbjct: 189 DDTLIQEAVNAMNISHAPYTNNLSGIALEMNSGRVFQGAYAENAAFNPSLPPLQVALIQI 248
Query: 242 LAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
L AG +E I AAALVE + + L+ ++P
Sbjct: 249 LMAGEQ------FENIKAAALVENSQGKISHLADTQSTLEALNPDI 288
>gi|397164324|ref|ZP_10487779.1| cytidine deaminase [Enterobacter radicincitans DSM 16656]
gi|396093472|gb|EJI91027.1| cytidine deaminase [Enterobacter radicincitans DSM 16656]
Length = 294
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 149/277 (53%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ + SGL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLSAEQVATLQRASGLNEDALAFALLPLAAACARTDLSHFNVGAIARGISGTWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L QS+HAEQ I++ L E L + V+ PCGHCRQF+ EL + D++I +
Sbjct: 92 FAGSTLQQSVHAEQSAISHAWLRGEKSLSAVTVNYTPCGHCRQFMNELNSGLDLHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L H LPD FGP DL K LL++ N +G +P+ + L
Sbjct: 152 -----RAPHTLGHYLPDAFGPKDLEIK--TLLMD--------NADHGFLPD----GDELA 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+SHAPY+ P+GVAI+ +G I+ G Y E+AA+NPSL P+Q+AL
Sbjct: 193 QAAINAANQSHAPYTNSPAGVAILCRDGQIFSGRYAENAAFNPSLPPLQSALNLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L E+ DA + Q A L+ I
Sbjct: 248 -SLNGYDYADIERAVLAERADAPLTQWDATAATLRTI 283
>gi|392979953|ref|YP_006478541.1| cytidine deaminase [Enterobacter cloacae subsp. dissolvens SDM]
gi|392325886|gb|AFM60839.1| cytidine deaminase [Enterobacter cloacae subsp. dissolvens SDM]
Length = 294
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 126/241 (52%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKALSAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + IN R H L LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLQLR-----INLPGRAPHTLGDYLPDAFGPKDLEIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + + L AA+ AANKSH PYS PSGVA+ +G I+ GSY
Sbjct: 181 DHGYALS------------GDDLNQAAIRAANKSHTPYSNSPSGVALQCRDGRIFSGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL G Y I A L E DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGALNLL------SLNGYDYPDIQRAILAEIADAPLIQWDATATTLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|282897236|ref|ZP_06305238.1| sxtB (Cytidine deaminase) [Raphidiopsis brookii D9]
gi|114462351|gb|ABI75093.1| cytidine deaminase [Cylindrospermopsis raciborskii T3]
gi|281197888|gb|EFA72782.1| sxtB (Cytidine deaminase) [Raphidiopsis brookii D9]
Length = 318
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 148/296 (50%), Gaps = 32/296 (10%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGS--------SGR 58
VI+++ S + G + L+ L+ A T AR PIS+F+VGA+ LG SG
Sbjct: 30 VIDSSVVASWIDRLGTNISTLMIQLLPVAATYARVPISQFYVGAIALGKPQSKNQLGSGT 89
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G ++EF G L S+HAEQ N L+ E LQ LA+ APCG+CRQFL E+ +
Sbjct: 90 LYFGADMEFVGQALSFSVHAEQSATINAWLHGETGLQALAIHEAPCGYCRQFLYEMATVN 149
Query: 119 DINICITSINSN--ERKY--HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQ 174
+ + N + E+ Y + L H LP+ FGP DL G++ L
Sbjct: 150 QNFVLLVKSNESQPEQTYTSNKLPHFLPEPFGPADL--------------GLTGGLMQTV 195
Query: 175 IPETEN-PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+ E + + AAL AAN+S+APY+K +GVA+ D GNI+ G Y E+AA+N S+ P
Sbjct: 196 FHDLETYSTDDVVLAALSAANQSYAPYTKNFAGVALKDSHGNIFTGRYAENAAFNSSMSP 255
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+++AL I A LVE E + Q L I+PK +
Sbjct: 256 MESALTFM----NMNRYSQSLFDICDAVLVEVETG-ISQRPVTEAFLSSIAPKVKL 306
>gi|262165488|ref|ZP_06033225.1| cytidine deaminase [Vibrio mimicus VM223]
gi|449145180|ref|ZP_21775989.1| cytidine deaminase [Vibrio mimicus CAIM 602]
gi|262025204|gb|EEY43872.1| cytidine deaminase [Vibrio mimicus VM223]
gi|449079216|gb|EMB50141.1| cytidine deaminase [Vibrio mimicus CAIM 602]
Length = 295
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 143/269 (53%), Gaps = 26/269 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL L L+ A + PIS+F+VGA+ G SGR++LG N+EF G L Q++HAE
Sbjct: 45 SGLEDADLRVALLPIAAAYSFAPISEFYVGAIVRGVSGRLYLGANMEFTGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL S + I + +R L
Sbjct: 105 QCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP-----KRAAKSLQE 159
Query: 140 LLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHA 198
LP+ FGP DL +D +G+ + +G+ T + E L AL A N S++
Sbjct: 160 YLPESFGPADLGID-----------SGLMSPMDHGK---TSSDDEELIQQALRAMNISYS 205
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV 258
PY++ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL + S +E I
Sbjct: 206 PYTQNFSGVALKMHSGAVYLGAYAENAAFNPSLPPLQVALAQAMMMSES------FEEIE 259
Query: 259 AAALVEKEDAVVRQEHAARLLLQVISPKC 287
AAALVE + + L+VI+P
Sbjct: 260 AAALVETSTGKISHLADTQATLEVINPDI 288
>gi|419885228|ref|ZP_14406016.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9545]
gi|388350763|gb|EIL16089.1| cytidine deaminase [Escherichia coli O111:H11 str. CVM9545]
Length = 294
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL ++ LL
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDL---EIKTLL 176
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
Q+ S+ L + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 177 MDEQD-HSYALTG----------DALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L E DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILL------NLKGYDYPDIQRAVLAENADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>gi|148975892|ref|ZP_01812681.1| cytidine deaminase [Vibrionales bacterium SWAT-3]
gi|145964637|gb|EDK29890.1| cytidine deaminase [Vibrionales bacterium SWAT-3]
Length = 295
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 141/273 (51%), Gaps = 24/273 (8%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S+ Q SGL +L L+ A + P+S F+VGA+ G SG ++ G N+E G L Q
Sbjct: 40 SLLQASGLADDELRIALLPFAAAYSYAPLSDFYVGAIVRGLSGTLYFGANLEIAGAQLGQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 100 TVHAEQSAISHAWMKGERGISDITINFSPCGHCRQFMNELTTAKELKVQLP-----QRDE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAAN 194
L LPD FGP+DL G+ L + E P + AL A N
Sbjct: 155 MSLQEYLPDSFGPSDL----------GVTTGLMSELDHKYTTEETTP---IVVEALAALN 201
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254
+SHAPY+K SGV++ G I+ G+Y E+AA+NPSL P+Q AL+ AG +
Sbjct: 202 RSHAPYTKNLSGVSLQLTTGEIFTGAYAENAAFNPSLPPLQVALIQLKLAGFD------F 255
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E+I +AALVE + + + L+ I+P
Sbjct: 256 EQIESAALVEIAEGSISHLADTQSTLEAINPDI 288
>gi|84394528|ref|ZP_00993237.1| cytidine deaminase [Vibrio splendidus 12B01]
gi|84374853|gb|EAP91791.1| cytidine deaminase [Vibrio splendidus 12B01]
Length = 295
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 140/273 (51%), Gaps = 24/273 (8%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S+ Q SGL +L L+ A + P+S F+VGA+ G SG ++ G N+E G L Q
Sbjct: 40 SLLQASGLADDELRIALLPFAAAYSYAPLSDFYVGAIVRGLSGTLYFGANLEIAGAQLGQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 100 TVHAEQSAISHAWMKGEQGISDITINFSPCGHCRQFMNELTTAKELKVQLP-----QRDE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAAN 194
L LPD FGP DL G+ L + E P + AL A N
Sbjct: 155 MSLQEYLPDSFGPADL----------GVTTGLMTKLDHKHTTEETTP---IVVEALAALN 201
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254
+SHAPY+K SGV++ G I+ G+Y E+AA+NPSL P+Q AL+ AG +
Sbjct: 202 RSHAPYTKNLSGVSLQLTSGEIFTGAYAENAAFNPSLPPLQVALIQLKLAGFD------F 255
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E+I +AALVE + + + L+ I+P
Sbjct: 256 EQIESAALVEIAEGSISHLADTQSTLEAINPDI 288
>gi|269962178|ref|ZP_06176531.1| cytidine deaminase [Vibrio harveyi 1DA3]
gi|424045518|ref|ZP_17783083.1| cytidine deaminase [Vibrio cholerae HENC-03]
gi|269833009|gb|EEZ87115.1| cytidine deaminase [Vibrio harveyi 1DA3]
gi|408886568|gb|EKM25242.1| cytidine deaminase [Vibrio cholerae HENC-03]
Length = 295
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 151/280 (53%), Gaps = 24/280 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + + + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TISEQQFDELLNATNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ I +
Sbjct: 92 FFGVQLGQTVHAEQCAISHAWMKGEHGVKDITINYSPCGHCRQFMNELTTAKELKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER+ L H LP+ FGP DL ++G+ ++ + + + ++ L
Sbjct: 151 ----EREEKSLHHYLPEAFGPADL----------GIESGLMADVKHEFVCDEDDA---LI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+ A N SHAPY+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QKAVSAMNISHAPYTNNLSGIALEMNSGRVFQGAYAENAAFNPSLPPLQVALIQILMAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
+E I AAALVE + + L+ ++P
Sbjct: 254 Q------FEDIKAAALVENSQGKISHLADTQSTLEALNPD 287
>gi|437876689|ref|ZP_20848664.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435334212|gb|ELP04860.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
Length = 224
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 126/238 (52%), Gaps = 25/238 (10%)
Query: 46 FHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCG 105
F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V+ PCG
Sbjct: 1 FNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCG 60
Query: 106 HCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNG 165
HCRQF+ EL + D+ I + R H L LPD FGP DL K LL++ +G
Sbjct: 61 HCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHG 113
Query: 166 MSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESA 225
+ + L AA+ AANKSH PYS PSGVA+ +G I+ GSY E+A
Sbjct: 114 FTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENA 161
Query: 226 AYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
A+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+ +
Sbjct: 162 AFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAATLKAL 213
>gi|195984482|gb|ACG63827.1| SxtB [Lyngbya wollei]
Length = 322
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 156/295 (52%), Gaps = 30/295 (10%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLG--------SSGR 58
VI+++ S + G+ + L+ L+ A T AR PIS+F+VGA+ LG SG
Sbjct: 30 VIDSSVVASWLDQIGIDIGTLMIQLLPVAATYARVPISQFYVGAIALGKPKSKNQVDSGT 89
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G ++EF G L S+HAEQ N L+ E LQ LA+ APCG CRQFL E+ +
Sbjct: 90 LYFGADMEFVGQALSTSVHAEQSATINAWLHGETGLQALAIHEAPCGSCRQFLYEMATVN 149
Query: 119 -DINICITSINSN-ERKY--HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQ 174
D I + S + E+ Y + L H LP+ FGP +L L+ET +G+ C+
Sbjct: 150 QDFVIFLKSNKTQIEQTYTSNRLPHFLPEAFGPANL--GLTSGLMETVFHGL--ETCS-- 203
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+ + AAL AAN+S+APY+K +GVA+ D GNI+ G Y E+AA+N S+ P+
Sbjct: 204 -------TDDVVLAALSAANQSYAPYTKNFAGVALKDSHGNIFTGRYAENAAFNSSMSPM 256
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
++AL Y+ S I A LVE E + Q +L I+P+ E
Sbjct: 257 ESALT-YMNMNKSPQSPFD---ICDAVLVEVE-TTISQRPVTEAVLSSIAPQVEL 306
>gi|149190024|ref|ZP_01868302.1| cytidine deaminase [Vibrio shilonii AK1]
gi|148836190|gb|EDL53149.1| cytidine deaminase [Vibrio shilonii AK1]
Length = 295
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 147/291 (50%), Gaps = 26/291 (8%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ +P F + + E + SGL +L L+ A + PIS+F VGA+ G+SG+
Sbjct: 24 ITKPEFDATLSQEQFEQLLVLSGLEDDELRVALLPLAAAYSYAPISEFFVGAIARGTSGK 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+E G L Q++HAEQ I++ + E L+ + ++ +PCGHCRQF+ EL
Sbjct: 84 LYFGANMEIIGAQLGQTVHAEQSAISHAWMKGETGLKDITINFSPCGHCRQFMNELTTAD 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + +R L LP+ FGP DL G+ L + T
Sbjct: 144 KLVIQLP-----QRDAMTLQEYLPESFGPKDL----------GITEGLMSPLAHAL---T 185
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ + L +A+EA N+SH+PY++ SGVAI +G++Y+G+Y E+AA+NPSL P+Q A
Sbjct: 186 TDETDTLVVSAVEALNRSHSPYTQNLSGVAIAMKDGSVYQGAYAENAAFNPSLPPLQVAF 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
V L G +E I AL E + + L+ I P +
Sbjct: 246 VQLLL------DGQNFEDIQLVALAEVSKGKISHLADTQATLEAIDPDIQL 290
>gi|260778467|ref|ZP_05887359.1| cytidine deaminase [Vibrio coralliilyticus ATCC BAA-450]
gi|260604631|gb|EEX30926.1| cytidine deaminase [Vibrio coralliilyticus ATCC BAA-450]
Length = 295
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 147/268 (54%), Gaps = 24/268 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL +L L+ A + PISKF+VGA+ G +GR++ G NVE G L Q++HAE
Sbjct: 45 SGLEDDELRVALLPFAAAYSYAPISKFYVGAIVRGLTGRLYFGANVEILGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL ++ + + ++ K L
Sbjct: 105 QSAISHAWMKGEQGISDITINFSPCGHCRQFMNELTTADEL---VVQLPQHDEK--TLQE 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP+DL K +G+ + +G+ E E+ + LK AL+A NKSHAP
Sbjct: 160 YLPESFGPSDLGIK----------SGLMASTDHGKKCE-ESDEMVLK--ALDALNKSHAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+ SGV+I G +Y+G+Y E+AA+NPSL P+Q AL+ L G S ++ I
Sbjct: 207 YTHNLSGVSIKLKNGKVYQGAYAENAAFNPSLPPLQVALIQLLLDGES------FDDIET 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPKC 287
ALVE + + + L+ I+P
Sbjct: 261 TALVEMSEGTISHLADTQSTLEAINPDI 288
>gi|342904836|ref|ZP_08726633.1| Cytidine deaminase [Haemophilus haemolyticus M21621]
gi|341952435|gb|EGT78962.1| Cytidine deaminase [Haemophilus haemolyticus M21621]
Length = 292
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 146/281 (51%), Gaps = 26/281 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ E + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVEQLCRDFELTPLKLAMHLLPIAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFSNS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD V LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAVHLLAEENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
ERIV A EK + + A LL + S K E++
Sbjct: 253 KLTDIERIVMA---EKALKLSHKTMAEALLSTLTSVKLEYH 290
>gi|424031586|ref|ZP_17771020.1| cytidine deaminase [Vibrio cholerae HENC-01]
gi|424038464|ref|ZP_17777043.1| cytidine deaminase [Vibrio cholerae HENC-02]
gi|408877307|gb|EKM16373.1| cytidine deaminase [Vibrio cholerae HENC-01]
gi|408894324|gb|EKM31087.1| cytidine deaminase [Vibrio cholerae HENC-02]
Length = 295
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 148/285 (51%), Gaps = 34/285 (11%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
I + E++ + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TISEQQFEALLNATNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ I +
Sbjct: 92 FFGVQLGQTVHAEQCAISHAWMKGERGVKDITINYSPCGHCRQFMNELTTAKELKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETE-----NP 181
ER+ L LP+ FGP DL + +G + E + +
Sbjct: 151 ----EREEKSLHDYLPEAFGPADL------------------GIQSGLMAEVKHEFACDD 188
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
+ L A+ A N SHAPY+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+
Sbjct: 189 NDTLIQKAVTAMNISHAPYTNNLSGIALEMNSGRVFQGAYAENAAFNPSLPPLQVALIQI 248
Query: 242 LAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
L AG +E I AAALVE + + L+ ++P
Sbjct: 249 LMAGEQ------FEDIKAAALVENSQGKISHLADTQSTLEALNPD 287
>gi|386389577|ref|ZP_10074391.1| cytidine deaminase [Haemophilus paraphrohaemolyticus HK411]
gi|385695347|gb|EIG25909.1| cytidine deaminase [Haemophilus paraphrohaemolyticus HK411]
Length = 292
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 137/266 (51%), Gaps = 30/266 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+QLLP A + IS FHVGA+ +G G + G N EF + + Q+IHAEQ I+
Sbjct: 53 MQLLPV----AACYSHTDISHFHVGAIAIGEHGDFYFGANQEFSNVEIQQTIHAEQSAIS 108
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ L E R+ + V+ PCGHCRQF+ EL I SI+ +++PL LPD
Sbjct: 109 HAWLRGEKRITDMVVNYTPCGHCRQFMNELYQAEKI-----SIHLPYSQHNPLHRYLPDA 163
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP DL D+ LL N N Q+ EN + L A+ AAN++H PYS P
Sbjct: 164 FGPKDL---DIHTLL--------LNQENHQL--DENHPDNLVQQAIGAANQAHCPYSNSP 210
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAAALV 263
GVAI+ G I G Y E+AA+NPSL +Q AL AYL + ERIV L
Sbjct: 211 HGVAILFRNGTIITGRYAENAAFNPSLPALQTALNYAYL----NNLDLAEIERIV---LA 263
Query: 264 EKEDAVVRQEHAARLLLQVISPKCEF 289
EK + + + +LL + K E+
Sbjct: 264 EKSIKLSYKGMSEQLLTTISEVKLEY 289
>gi|331653572|ref|ZP_08354573.1| cytidine deaminase, partial [Escherichia coli M718]
gi|331048421|gb|EGI20497.1| cytidine deaminase [Escherichia coli M718]
Length = 274
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 127/233 (54%), Gaps = 25/233 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQ 272
SY E+AA+NP+L P+Q AL+ G Y I A L E DA + Q
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAENADAPLIQ 272
>gi|398799311|ref|ZP_10558603.1| cytidine deaminase, homodimeric [Pantoea sp. GM01]
gi|398099179|gb|EJL89451.1| cytidine deaminase, homodimeric [Pantoea sp. GM01]
Length = 298
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 144/290 (49%), Gaps = 29/290 (10%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F V+ + + Q +GL L L+ A + A +S+F+VGA+ G SG
Sbjct: 24 LDAPDFHGVLRPQDIAQLKQLTGLDDDALALELLPLAASCAVATVSQFNVGAISRGVSGH 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF PL Q++HAEQ IT+ L E +L + V+ PCGHCRQF+ EL + +
Sbjct: 84 WYFGANMEFLHAPLQQTVHAEQSAITHAWLRGEEKLVAITVNYTPCGHCRQFMNELNSGT 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
I I + R L LPD FGP DL LL +G +
Sbjct: 144 AIRISLPG-----RAVSTLGDYLPDAFGPADL--NITERLLTPVNHGFAVQ--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
E L+ AA+EAAN SHAPYS SGVA++ G + G Y E+AA+NPSL P+QAAL
Sbjct: 188 ---GEALQQAAIEAANHSHAPYSLSYSGVALLSHSGKTFTGRYAENAAFNPSLPPLQAAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
+ + I A L E +D+ + Q A R L + CE
Sbjct: 245 ILM------NMSNEALDTIQQAVLAECQDSTLSQLDATRATLAALG--CE 286
>gi|343493176|ref|ZP_08731508.1| cytidine deaminase [Vibrio nigripulchritudo ATCC 27043]
gi|342826434|gb|EGU60863.1| cytidine deaminase [Vibrio nigripulchritudo ATCC 27043]
Length = 295
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 138/274 (50%), Gaps = 24/274 (8%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
+ + SGL L L+ A + PIS F+VGA+ G SGR++ G NVEF + L Q+
Sbjct: 41 LMEVSGLKDEDLRVALLPVAAAYSHAPISNFYVGAIARGLSGRLYFGANVEFLNVQLGQT 100
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYH 135
IHAEQ I++ + E ++ + V+ +PCGHCRQF+ EL +++++ + R+
Sbjct: 101 IHAEQCAISHAWMKKEHGIKDITVNFSPCGHCRQFMNELNTATELSVQLP-----HRQPK 155
Query: 136 PLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANK 195
L LP+ FGP D+ + L+ +G SF + L AAL A N
Sbjct: 156 TLHEYLPEAFGPQDIGIESA--LMTEIDHGKSF-----------ESDKSLVNAALNALNM 202
Query: 196 SHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYE 255
SHAPYS SGVA+ G Y G+Y E+AA+NPSL P+Q AL+ L A S E
Sbjct: 203 SHAPYSHNLSGVAVQTESGAEYSGAYAENAAFNPSLPPLQVALIQLLLAEDS------LE 256
Query: 256 RIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
I A L+E + LQ I+P
Sbjct: 257 LITNAVLIESNSGTSSHFANTQATLQAINPDISL 290
>gi|156974401|ref|YP_001445308.1| cytidine deaminase [Vibrio harveyi ATCC BAA-1116]
gi|167008666|sp|A7MVH6.1|CDD_VIBHB RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|156525995|gb|ABU71081.1| hypothetical protein VIBHAR_02116 [Vibrio harveyi ATCC BAA-1116]
Length = 295
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 144/267 (53%), Gaps = 24/267 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
+ L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+EF G+ L Q++HAE
Sbjct: 45 TNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANMEFFGVQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E ++ + ++ +PCGHCRQF+ EL ++ I + ER+ L H
Sbjct: 105 QCAISHAWMKGEHGVKDITINYSPCGHCRQFMNELSTAKELKIQLP-----ERQEKSLHH 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP D L + L+ E +C + + L A+ A N SHAP
Sbjct: 160 YLPEAFGPAD-LGIESGLMAEVKHEF----VC--------DEDDALIQKAVNAMNISHAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+ L AG +E I A
Sbjct: 207 YTNNLSGIALEMNSGLVFQGAYAENAAFNPSLPPLQVALIQILMAGEK------FEDIKA 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPK 286
AALVE + + L+ ++P
Sbjct: 261 AALVENSQGKISHLADTQSTLEALNPD 287
>gi|218709705|ref|YP_002417326.1| cytidine deaminase [Vibrio splendidus LGP32]
gi|254813809|sp|B7VPF1.1|CDD_VIBSL RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|218322724|emb|CAV18900.1| cytidine deaminase [Vibrio splendidus LGP32]
Length = 295
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 24/273 (8%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S+ Q SGL +L L+ A + P+S F+VGA+ G SG ++ G N+E G L Q
Sbjct: 40 SLLQASGLADDELRIALLPFAAAYSYAPLSDFYVGAIVRGLSGTLYFGANLEIAGAQLGQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 100 TVHAEQSAISHAWMKGEQGISDITINFSPCGHCRQFMNELTTAKELKVQLP-----QRDE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAAN 194
L LPD FGP DL G+ L + E P + AL A N
Sbjct: 155 MSLQEYLPDSFGPADL----------GVTTGLMTKLDHKHTTEETTP---IVVEALAALN 201
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254
+SHAPY+K SGV++ G ++ G+Y E+AA+NPSL P+Q AL+ AG +
Sbjct: 202 RSHAPYTKNLSGVSLQLTSGEVFTGAYAENAAFNPSLPPLQVALIQLKLAGFD------F 255
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E+I AALVE + + + L+ I+P
Sbjct: 256 EQIENAALVEIAEGSISHLADTQSTLEAINPDI 288
>gi|260772967|ref|ZP_05881883.1| cytidine deaminase [Vibrio metschnikovii CIP 69.14]
gi|260612106|gb|EEX37309.1| cytidine deaminase [Vibrio metschnikovii CIP 69.14]
Length = 295
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 24/245 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS FHVGA+ G SGR++ G N+EF G L Q+IHAEQ I++ + E L + V+
Sbjct: 67 PISNFHVGAIARGVSGRLYFGANMEFSGAQLGQTIHAEQAAISHAWMKGEQGLASMTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
+PCGHCRQF+ EL + I + +R+ L + LP+ FGP+DL
Sbjct: 127 SPCGHCRQFMNELNTAPSLTIQLP-----QREEKSLQYYLPESFGPSDL----------G 171
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q+ + + +G + ++ L A+ A N+SHAPY+ SGVA+ G Y G+Y
Sbjct: 172 IQSALMTPIDHGY---RSDDQDALIQTAISALNRSHAPYTNNLSGVALRSASGAEYSGAY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q AL+ AG + + AALVE + + L+
Sbjct: 229 AENAAFNPSLPPLQVALIQLRMAGEE------FTDLAGAALVEMAQGQISHLADTQATLE 282
Query: 282 VISPK 286
I+P
Sbjct: 283 TINPD 287
>gi|445229397|ref|ZP_21405041.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444865490|gb|ELX90260.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
Length = 252
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 19/232 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL 244
>gi|153833695|ref|ZP_01986362.1| cytidine deaminase [Vibrio harveyi HY01]
gi|148869974|gb|EDL68934.1| cytidine deaminase [Vibrio harveyi HY01]
Length = 295
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 144/267 (53%), Gaps = 24/267 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
+ L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+EF G+ L Q++HAE
Sbjct: 45 TNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANMEFFGVQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E ++ + ++ +PCGHCRQF+ EL ++ I + ER+ L H
Sbjct: 105 QCAISHAWMKGEHGVKDITINYSPCGHCRQFMNELSTAKELKIQLP-----EREEKSLHH 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP D L + L+ E +C + + L A+ A N SHAP
Sbjct: 160 YLPEAFGPAD-LGIESGLMAEVKHEF----VC--------DEDDALIQKAVNAMNISHAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+ SG+A+ G +++G+Y E+AA+NPSL P+Q AL+ L AG +E I A
Sbjct: 207 YTNNLSGIALEMNSGLVFQGAYAENAAFNPSLPPLQVALIQILMAGEK------FEDIKA 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPK 286
AALVE + + L+ ++P
Sbjct: 261 AALVENSQGKISHLADTQSTLEALNPD 287
>gi|254506269|ref|ZP_05118412.1| cytidine deaminase [Vibrio parahaemolyticus 16]
gi|219550749|gb|EED27731.1| cytidine deaminase [Vibrio parahaemolyticus 16]
Length = 295
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 141/268 (52%), Gaps = 24/268 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL +L L+ A + PIS F+VGA+ G SGR++ G NVE G L Q++HAE
Sbjct: 45 SGLEDDELRVALLPFAAAYSYAPISNFYVGAIVRGLSGRLYFGANVEILGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL + + + +R L
Sbjct: 105 QSAISHAWMKGEQGISDITINFSPCGHCRQFMNELTTADKLVVQLP-----QRDEMTLQE 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP+DL ++G+ ++ +G+ N + + A+EA N+SHAP
Sbjct: 160 YLPESFGPSDL----------GIESGLMSSVDHGK---HTNETDEMVNKAVEALNRSHAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+K SGV + G +Y G+Y E+AA+NPSL P+Q A++ L G S + I +
Sbjct: 207 YTKNLSGVCLKLDSGEVYLGAYAENAAFNPSLPPLQVAMIQLLLDGKS------LQNIES 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPKC 287
AAL E D + + L+ I+P
Sbjct: 261 AALAEMADGTISHLADTQATLEAINPDI 288
>gi|149912252|ref|ZP_01900828.1| cytidine deaminase [Moritella sp. PE36]
gi|149804673|gb|EDM64727.1| cytidine deaminase [Moritella sp. PE36]
Length = 297
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 146/285 (51%), Gaps = 24/285 (8%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ +P F VI A + + + S L +LL +L+ A + PIS F+VGA+ SG
Sbjct: 24 ISKPDFKGVINAEDVDLLQLHSALETPELLLSLLPLAAAYSVAPISDFNVGAIARAGSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N EF L S+HAEQ I N + E + + V+ +PCGHCRQF+ EL
Sbjct: 84 LYFGANYEFTHQALFNSVHAEQAAINNAFSHHESAILDITVTDSPCGHCRQFMNELHCAP 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
++ S+N L+ LLPD FGP DL + E+ NL Q E+
Sbjct: 144 EL-----SVNLKATGVKTLATLLPDSFGPIDL------GISESLLAAKPVNLTLQQPSES 192
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L AAL+AAN S+APYS C +G+A+ G + G Y+E+AA+NPSL P+Q+ L
Sbjct: 193 -----TLVQAALKAANDSYAPYSHCHAGIALKTTTGTVIAGRYIENAAFNPSLSPMQSVL 247
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
V A G G+ I A LVEK D + A ++L+ I
Sbjct: 248 VNLNLA------GFGFADIAAMILVEKADTKMSHAQATQILVSEI 286
>gi|86146816|ref|ZP_01065136.1| cytidine deaminase [Vibrio sp. MED222]
gi|85835466|gb|EAQ53604.1| cytidine deaminase [Vibrio sp. MED222]
Length = 295
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 24/273 (8%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S+ Q SG +L L+ A + P+S F+VGA+ G SG ++ G N+E G L Q
Sbjct: 40 SLLQASGFADDELRIALLPFAAAYSYAPLSDFYVGAIVRGLSGTLYFGANLEIAGAQLGQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 100 TVHAEQSAISHAWMKGEQGISDITINFSPCGHCRQFMNELTTAKELKVQLP-----QRDE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAAN 194
L LPD FGP DL G+ L + E P + AL A N
Sbjct: 155 MSLQEYLPDSFGPADL----------GVTTGLMTKLDHKYTTEETTP---IVVDALAALN 201
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254
+SHAPY+K SGV++ G I+ G+Y E+AA+NPSL P+Q AL+ AG +
Sbjct: 202 RSHAPYTKNLSGVSLQLTSGEIFTGAYAENAAFNPSLPPLQVALIQLKLAGFD------F 255
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E+I +AALVE + + + L+ I+P
Sbjct: 256 EQIESAALVEIAEGSISHLADTQSTLEAINPDI 288
>gi|333375635|ref|ZP_08467442.1| cytidine deaminase [Kingella kingae ATCC 23330]
gi|332970099|gb|EGK09096.1| cytidine deaminase [Kingella kingae ATCC 23330]
Length = 269
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 126/234 (53%), Gaps = 17/234 (7%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
F A AE Q + ++ +L+ A A P+S+F VGA+ + G +LG N
Sbjct: 4 FYTSAQVAELAKQSNAADIIDFALSLLSQAAECAVVPVSQFKVGAIAIDVDGNFYLGANQ 63
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
E G + Q++HAEQ I++ ++ H+ V+ PCGHCRQFL ELR N+ I
Sbjct: 64 ECAGAAMAQTVHAEQSAISHAWARGATQIAHIVVNYTPCGHCRQFLNELRGAE--NLLIH 121
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPKER 184
+S + + H LPD F P DL D+P LL+ G++ + + +T P
Sbjct: 122 LPHSRDNRLHD---YLPDSFSPKDL---DIPERLLDKQNQGLTLS-----VDDTATP--- 167
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L AAL+AAN SHAPYS +GVA+ G I+ G Y E+AAYNP+L P+Q AL
Sbjct: 168 LVQAALDAANCSHAPYSHAYAGVALQCSNGEIFAGGYAENAAYNPTLPPLQNAL 221
>gi|261868428|ref|YP_003256350.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413760|gb|ACX83131.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 298
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K LT QL L+ A A PIS F+VGAV G G + G
Sbjct: 39 PHFAVQ-----HLCNKHQLTPKQLALKLLPIAACYATTPISHFNVGAVVHGIGGDFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I
Sbjct: 94 NQEFCQTDIQQTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL ++ L LL+ H N +S N +NP
Sbjct: 154 LPHSQNN-----LLHQYLPDAFGPKDL---NIQLSLLDQHDNQLSLN--------NDNP- 196
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
L AL AN++HAPYS G+AI IY GSY E+AA+NPSL +Q AL +
Sbjct: 197 --LVLQALAMANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLI 254
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+G E IV +VEK + + + A LL + K ++
Sbjct: 255 LSGEE------VENIVRVVMVEKSNTLHYKAMAEELLSTLSDVKLDY 295
>gi|157962309|ref|YP_001502343.1| cytidine deaminase [Shewanella pealeana ATCC 700345]
gi|189081904|sp|A8H5H1.1|CDD_SHEPA RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|157847309|gb|ABV87808.1| Cytidine deaminase [Shewanella pealeana ATCC 700345]
Length = 296
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 117/199 (58%), Gaps = 18/199 (9%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
RPPIS+FHVGA+ G SG I++G N+E PG L S+HAEQ I++ L+ E ++ + V
Sbjct: 64 RPPISQFHVGAIAKGKSGDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIV 123
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+A+PCGHCRQF+ EL + +NI + ++ PLSH LP FGP+D LD P LL
Sbjct: 124 NASPCGHCRQFINELVDGGKVNIHLP-----DQATAPLSHYLPYAFGPSD-LDVTEP-LL 176
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
Q ++ + + I E L+ A S+APY+K + V + +G Y G
Sbjct: 177 SKQQQTLTLDSNDPMIIE-----------GLDHAGLSYAPYTKAYASVVLETKDGATYCG 225
Query: 220 SYMESAAYNPSLGPVQAAL 238
Y E+AA+NPS+ P+Q AL
Sbjct: 226 RYAENAAFNPSMQPMQMAL 244
>gi|398792724|ref|ZP_10553285.1| cytidine deaminase, homodimeric [Pantoea sp. YR343]
gi|398212421|gb|EJM99029.1| cytidine deaminase, homodimeric [Pantoea sp. YR343]
Length = 298
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 143/290 (49%), Gaps = 29/290 (10%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F V+ + + Q +GL L L+ A + A +S F+VGA+ G SG
Sbjct: 24 LDAPDFHGVLRPQDVAQLKQLTGLDDDALALELLPLAASCAVATVSNFNVGAISRGVSGH 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF PL Q++HAEQ IT+ L E +L + V+ PCGHCRQF+ EL + +
Sbjct: 84 WYFGANMEFLHTPLQQTVHAEQSAITHAWLCGEEKLAAITVNYTPCGHCRQFMNELNSGT 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
I I + R L LPD FGP DL LL +G +
Sbjct: 144 AIRISLPG-----RAVSTLGDYLPDAFGPADL--NITERLLTPIDHGFAL---------- 186
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AA+ AAN SHAPYSK SGVA+ G ++ G Y E+AA+NPSL P+QAAL
Sbjct: 187 --AGDALQQAAISAANHSHAPYSKSYSGVALRSQSGKVFTGRYAENAAFNPSLPPLQAAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
+ E I A L E +++ + Q A R L + CE
Sbjct: 245 ILM------NMSNEALETIQQAVLAECQESTLSQLDATRATLTALG--CE 286
>gi|417845498|ref|ZP_12491526.1| Cytidine deaminase [Haemophilus haemolyticus M21639]
gi|341955068|gb|EGT81533.1| Cytidine deaminase [Haemophilus haemolyticus M21639]
Length = 292
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 26/281 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ E + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVEQLCRDFELTSLKLAMHLLPIAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFSNS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL+ I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELQGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL E + + ++ ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLAEENHDLVA------------EHQDDLINQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
ERIV A EK + + A LL + S K E++
Sbjct: 253 KLSDIERIVMA---EKALKLSHKMMAEALLSTLTSVKLEYH 290
>gi|332290331|ref|YP_004421183.1| cytidine deaminase [Gallibacterium anatis UMN179]
gi|330433227|gb|AEC18286.1| cytidine deaminase [Gallibacterium anatis UMN179]
Length = 304
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 136/268 (50%), Gaps = 29/268 (10%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQLLP A + P+S F+VGAV G SG ++ G N EF + Q+IHAEQ I+
Sbjct: 61 LQLLPI----AACYSVTPVSNFNVGAVAHGISGALYFGANQEFCDSSMQQTIHAEQSAIS 116
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ +N E + + V+ PCGHCRQF+ EL + I + +N L LPD
Sbjct: 117 HAWMNNEATITAITVNYTPCGHCRQFMNELNSAEQFYIHLPHAQNNR-----LHQYLPDA 171
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP DL K L + H N + T + E L AL AAN+SHAPYS+
Sbjct: 172 FGPKDLDIKTC--LFDPHNNKL-----------TIDSFEPLAQQALLAANRSHAPYSQAY 218
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVE 264
GVA++ + I G Y E+AA+NPSL +Q A+ +G + I AA +VE
Sbjct: 219 CGVALLLKDDTILTGRYAENAAFNPSLPALQVAINLVRLSGYHD------QDITAAVMVE 272
Query: 265 KEDAVVRQEHAARLLLQVISPKCEFNVF 292
++Q A LLQ I+PK +F F
Sbjct: 273 LPTK-IQQRSMAEQLLQAINPKIKFQYF 299
>gi|41090|emb|CAA44849.1| cytidine deaminase [Escherichia coli K-12]
Length = 330
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 117/200 (58%), Gaps = 19/200 (9%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALV 239
SY E+AA+NP+L P+Q AL+
Sbjct: 226 SYAENAAFNPTLPPLQGALI 245
>gi|209695178|ref|YP_002263107.1| cytidine deaminase [Aliivibrio salmonicida LFI1238]
gi|208009130|emb|CAQ79369.1| cytidine deaminase [Aliivibrio salmonicida LFI1238]
Length = 302
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 146/280 (52%), Gaps = 24/280 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI + +++ +S LT +L L+ A + PIS F+VGA+ G+SG ++ G N+E
Sbjct: 39 VITQDQFQALLAQSQLTDKELRLALLPLAAAFSVAPISNFYVGAIARGTSGHLYFGANME 98
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F + L Q+IHAEQ I++ ++ E + + ++ +PCGHCRQF+ EL + + +
Sbjct: 99 FSNVQLGQTIHAEQSAISHAWIHGETGISDITINFSPCGHCRQFMNELTTADSLMVQLP- 157
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + LL T + ++F E+ +P L
Sbjct: 158 ----ERDEKSLQAYLPESFGPKDLGVEGG--LLATTSHKLNF--------ESTSP---LL 200
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A +AAN+SHAPYSK SGVA+ GNIY G Y E+AA+NPSL P+Q AL+
Sbjct: 201 MQAFDAANRSHAPYSKNFSGVALEMNNGNIYHGMYAENAAFNPSLPPLQVALI------H 254
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
+ I AALVE + L+ +SP
Sbjct: 255 ANMSREALSEIKKAALVEDHKGAISHLAITTCTLKDLSPN 294
>gi|387771417|ref|ZP_10127578.1| cytidine deaminase [Haemophilus parahaemolyticus HK385]
gi|386908776|gb|EIJ73462.1| cytidine deaminase [Haemophilus parahaemolyticus HK385]
Length = 293
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 134/266 (50%), Gaps = 30/266 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+QLLP A + IS F VGA+ +G G + G N EF + Q+IHAEQ I+
Sbjct: 53 MQLLPV----AACYSHTDISHFKVGAIAIGEHGDFYFGANQEFAHTAIQQTIHAEQSAIS 108
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ L E R+ + V+ PCGHCRQF+ EL +I I + +++PL LPD
Sbjct: 109 HAWLRGEKRISDMVVNYTPCGHCRQFMNELHQAENIAIHLP-----HSQHNPLHSYLPDA 163
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP +L + L E HQ EN ++L A+ AAN++H PYS P
Sbjct: 164 FGPKNLDIHTLLLNQEDHQ-------------LNENHPDQLVQEAIHAANQAHCPYSNSP 210
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAAALV 263
G+AI+ G I G Y E+AA+NPSL +Q AL AYL + ERIV L
Sbjct: 211 HGIAILFRNGEIITGRYAENAAFNPSLPALQTALNYAYL----NNLDLAEIERIV---LA 263
Query: 264 EKEDAVVRQEHAARLLLQVISPKCEF 289
EK + +E +LL ++ K E+
Sbjct: 264 EKPTKLSYREMTEQLLNTIVEVKMEY 289
>gi|365968215|ref|YP_004949777.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|365747128|gb|AEW78033.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans ANH9381]
Length = 298
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K LT QL L+ A A PIS F+VGAV G G + G
Sbjct: 39 PHFAVQ-----HLCNKHQLTPKQLALKLLPIAACYATTPISHFNVGAVVHGIGGDFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I
Sbjct: 94 NQEFCQTDIQQTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL ++ L LL+ H N +S N +NP
Sbjct: 154 LPHSQNN-----LLHQYLPDAFGPKDL---NIQLSLLDQHDNQLSLN--------NDNP- 196
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
L AL AN++HAPYS G+AI IY GSY E+AA+NPSL +Q AL +
Sbjct: 197 --LVLQALAMANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLI 254
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+G E IV +VEK + + + A LL + K ++
Sbjct: 255 LSGEE------VENIVRVVMVEKSNTLHYKAMAEELLGTLSDVKLDY 295
>gi|213854519|ref|ZP_03382759.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 285
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 125/232 (53%), Gaps = 19/232 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GNTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL 244
>gi|419839387|ref|ZP_14362796.1| cytidine deaminase [Haemophilus haemolyticus HK386]
gi|386909527|gb|EIJ74200.1| cytidine deaminase [Haemophilus haemolyticus HK386]
Length = 292
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 141/270 (52%), Gaps = 26/270 (9%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
LT L+L L+ A + + IS F+VGA+ +G G + G N EF + Q+IHAEQ
Sbjct: 46 LTPLKLAMHLLPIAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFSNSAIQQTIHAEQS 105
Query: 82 LITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N PL L
Sbjct: 106 AISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPRSQNN-----PLHSYL 160
Query: 142 PDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYS 201
PD FGP D LD V LL E + + ++ + ++ L A+ AAN+SH PYS
Sbjct: 161 PDAFGPKD-LDIAVHLLAEENHDLVA------------DHQDDLVNQAILAANQSHCPYS 207
Query: 202 KCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAA 260
P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL + ERIV A
Sbjct: 208 NSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDKKLTDIERIVMA 263
Query: 261 ALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
EK + + A LL + S K E++
Sbjct: 264 ---EKALKLSHKTMAEALLSTLTSVKLEYH 290
>gi|415769856|ref|ZP_11484512.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416074990|ref|ZP_11584819.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|416103284|ref|ZP_11589277.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|444337408|ref|ZP_21151390.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
gi|444345807|ref|ZP_21153812.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|444348373|ref|ZP_21156052.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|348006417|gb|EGY46834.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|348008019|gb|EGY48298.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|348657217|gb|EGY74813.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443542428|gb|ELT52759.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|443546950|gb|ELT56534.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
gi|443547202|gb|ELT56743.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
Length = 298
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K LT QL L+ A A PIS F+VGAV G G + G
Sbjct: 39 PHFAVQ-----HLCNKHQLTPKQLALKLLPIAACYATTPISHFNVGAVVHGIGGDFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I
Sbjct: 94 NQEFCQTDIQQTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL ++ L LL+ H N +S N +NP
Sbjct: 154 LPHSQNN-----LLHQYLPDAFGPKDL---NIQLSLLDQHDNQLSLN--------NDNP- 196
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
L AL AN++HAPYS G+AI IY GSY E+AA+NPSL +Q AL +
Sbjct: 197 --LVLQALAMANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLI 254
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+G E IV +VEK + + + A LL + K ++
Sbjct: 255 LSGEE------VENIVRVVMVEKSNTLHYKAMAEELLGTLSDVKLDY 295
>gi|429084336|ref|ZP_19147343.1| Cytidine deaminase [Cronobacter condimenti 1330]
gi|426546654|emb|CCJ73384.1| Cytidine deaminase [Cronobacter condimenti 1330]
Length = 294
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/278 (37%), Positives = 143/278 (51%), Gaps = 27/278 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A +A + + SGL L L+ A A+ IS F+VGAV G SG ++ G N+E
Sbjct: 32 MFSAEQAADIRRLSGLDEDALAFALLPLAAACAQTEISHFNVGAVARGLSGSLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT- 125
F G + Q++HAEQ IT+ + E L + V+ PCGHCRQF+ EL N +T
Sbjct: 92 FRGAAMQQTVHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNEL------NSGLTL 145
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R LS LPD FGP DL K + E H + + L
Sbjct: 146 RINLPGRAPSQLSDYLPDAFGPRDLDIKTLIFDAENHGYALQ--------------GDAL 191
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+A+ +G ++ GSY E+AA+NPSL P+QAAL
Sbjct: 192 TQAAIAAANRSHAPYSQSPSGLALETRDGAVFTGSYAENAAFNPSLPPLQAALNLLSLT- 250
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G G+ I A L E+ +A + Q A L V+
Sbjct: 251 -----GYGWHDIARAVLAERHEATIVQRDATAATLNVL 283
>gi|417951634|ref|ZP_12594730.1| cytidine deaminase [Vibrio splendidus ATCC 33789]
gi|342804418|gb|EGU39736.1| cytidine deaminase [Vibrio splendidus ATCC 33789]
Length = 295
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 141/273 (51%), Gaps = 24/273 (8%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
++ + SGL +L L+ A + P+S F+VGA+ G SG ++ G N+E G L Q
Sbjct: 40 NLLEASGLADDELRIALLPFAAAYSYAPLSDFYVGAIVRGLSGTLYFGANLEIAGAQLGQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 100 TVHAEQSAISHAWMKGERGISDITINFSPCGHCRQFMNELTTAKELKVQLP-----QRDE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAAN 194
L LPD FGP+DL G+ L + E P + AL A N
Sbjct: 155 MSLQEYLPDSFGPSDL----------GVTTGLMSELDHKYTTEETTP---IVVEALAALN 201
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254
+SHAPY+K SGV++ G I+ G+Y E+AA+NPSL P+Q AL+ AG +
Sbjct: 202 RSHAPYTKNLSGVSLQLTTGEIFTGAYAENAAFNPSLPPLQVALIQLKLAGFD------F 255
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E+I +AALVE + + + L+ I+P
Sbjct: 256 EQIESAALVEIAEGSISHLADTQSTLEAINPDI 288
>gi|387121803|ref|YP_006287686.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|416033237|ref|ZP_11573006.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|416043466|ref|ZP_11574566.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|416070631|ref|ZP_11583662.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
gi|429734885|ref|ZP_19268884.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans Y4]
gi|444333996|ref|ZP_21149642.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
a str. A160]
gi|347997182|gb|EGY38209.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|347998971|gb|EGY39855.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
gi|347999185|gb|EGY40038.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|385876295|gb|AFI87854.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429150940|gb|EKX93830.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans Y4]
gi|443551002|gb|ELT59060.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
a str. A160]
Length = 298
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 136/267 (50%), Gaps = 26/267 (9%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + K LT QL L+ A A PIS F+VGAV G G + G N EF +
Sbjct: 44 QHLCNKHQLTPKQLALQLLPIAACYATTPISHFNVGAVVHGIGGDFYFGANQEFCQTDIQ 103
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I + +N
Sbjct: 104 QTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIHLPHSQNN--- 160
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPKERLKYAALEA 192
L LPD FGP DL ++ L LL+ H N +S N +NP L AL
Sbjct: 161 --LLHQYLPDAFGPKDL---NIQLRLLDQHDNQLSLN--------NDNP---LVLQALAM 204
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGG 252
AN++HAPYS G+AI IY GSY E+AA+NPSL +Q AL + +G
Sbjct: 205 ANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLILSGEE----- 259
Query: 253 GYERIVAAALVEKEDAVVRQEHAARLL 279
E IV +VEK + + + A +LL
Sbjct: 260 -VENIVRVVMVEKSNTLHYKAMAEKLL 285
>gi|415757634|ref|ZP_11481396.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348655391|gb|EGY70846.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans D17P-3]
Length = 278
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 136/267 (50%), Gaps = 26/267 (9%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + K LT QL L+ A A PIS F+VGAV G G + G N EF +
Sbjct: 24 QHLCNKHQLTPKQLALQLLPIAACYATTPISHFNVGAVVHGIGGDFYFGANQEFCQTDIQ 83
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I + +N
Sbjct: 84 QTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIHLPHSQNN--- 140
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPKERLKYAALEA 192
L LPD FGP DL ++ L LL+ H N +S N +NP L AL
Sbjct: 141 --LLHQYLPDAFGPKDL---NIQLRLLDQHDNQLSLN--------NDNP---LVLQALAM 184
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGG 252
AN++HAPYS G+AI IY GSY E+AA+NPSL +Q AL + +G
Sbjct: 185 ANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLILSGEE----- 239
Query: 253 GYERIVAAALVEKEDAVVRQEHAARLL 279
E IV +VEK + + + A +LL
Sbjct: 240 -VENIVRVVMVEKSNTLHYKAMAEKLL 265
>gi|167623713|ref|YP_001674007.1| cytidine deaminase [Shewanella halifaxensis HAW-EB4]
gi|189081903|sp|B0TQV3.1|CDD_SHEHH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167353735|gb|ABZ76348.1| Cytidine deaminase [Shewanella halifaxensis HAW-EB4]
Length = 296
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 18/199 (9%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
RPPIS+FHVGA+ G SG I++G N+E PG L S+HAEQ I++ L+ E ++ + V
Sbjct: 64 RPPISEFHVGAIAKGKSGDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIV 123
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+A+PCGHCRQF+ EL + S + I + + +K PL+H LP FGP+D L+ PLL
Sbjct: 124 NASPCGHCRQFINELVDGSKVKIHLPA-----QKIEPLAHYLPYAFGPSD-LNITEPLLT 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ Q+ ++ + + I E AL+ A S+APY+K + V + +G Y G
Sbjct: 178 K-QQHTLTLDSNDPMIIE-----------ALDHAGLSYAPYTKNYASVVLETKDGATYCG 225
Query: 220 SYMESAAYNPSLGPVQAAL 238
Y E+AA+NPS+ P+Q AL
Sbjct: 226 RYAENAAFNPSMQPMQMAL 244
>gi|283832428|ref|ZP_06352169.1| cytidine deaminase [Citrobacter youngae ATCC 29220]
gi|291072082|gb|EFE10191.1| cytidine deaminase [Citrobacter youngae ATCC 29220]
Length = 294
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 146/277 (52%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A AR P+S F+VGA+ G SG + GGN+E
Sbjct: 32 MLTAEQVSLLKRESGLDEDALAFALLPLAAACARTPLSNFNVGAIARGISGTWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R+ H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----REPHALRDYLPDAFGPKDLDIK--TLLMDDQDHGFALQ------------GDALA 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+ H PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAIAAANRCHMPYSNSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYPDIQRAVLAEKADAPLIQWDATSATLKAL 283
>gi|113461400|ref|YP_719469.1| cytidine deaminase [Haemophilus somnus 129PT]
gi|122945394|sp|Q0I4X6.1|CDD_HAES1 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|112823443|gb|ABI25532.1| cytidine deaminase [Haemophilus somnus 129PT]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 133/249 (53%), Gaps = 26/249 (10%)
Query: 18 QKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIH 77
+K +T +L L+ + A P IS F VGA+ G SG + G N EF + Q++H
Sbjct: 52 EKYHMTDKELALILLPVSACYANPTISHFSVGAIAKGESGSFYFGANQEFCTTNIQQTVH 111
Query: 78 AEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
AEQ I++ + E ++ + V+ PCGHCRQF+ EL + + I + N L
Sbjct: 112 AEQSAISHAWMRRESKITEITVNYTPCGHCRQFMNELNSAETLRIHLPHSQDN-----LL 166
Query: 138 SHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKS 196
H LPD FGP++L +D L + + + F TE+P L AAL+AAN+S
Sbjct: 167 HHYLPDAFGPHNLQIDNR---LFDKKAHNLFF--------VTEDP---LIQAALDAANQS 212
Query: 197 HAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYER 256
HAPYSK SG+A+ + I++GSY E+AA+NPSL P+Q AL L G E
Sbjct: 213 HAPYSKTYSGIALQLQDQQIFQGSYAENAAFNPSLPPLQTALNYLLL------NGNEVEN 266
Query: 257 IVAAALVEK 265
I A LVE+
Sbjct: 267 IARAVLVEQ 275
>gi|383145476|gb|AFG54326.1| Pinus taeda anonymous locus 2_8265_01 genomic sequence
Length = 133
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 96/135 (71%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + + +++GLT +Q L TLVK Q LAR PISKF VGAVGLG+SGRIF G N+EF
Sbjct: 1 IEADEVQRLCKEAGLTEMQYLATLVKPTQLLARVPISKFCVGAVGLGASGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL+ S+HAEQFL+ N + E +L+ +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLNHSVHAEQFLVANAAQHGEAQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ R L + LP
Sbjct: 121 HAETRS---LLYFLP 132
>gi|381401173|ref|ZP_09926088.1| cytidine deaminase [Kingella kingae PYKK081]
gi|380833862|gb|EIC13715.1| cytidine deaminase [Kingella kingae PYKK081]
Length = 271
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 125/234 (53%), Gaps = 17/234 (7%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
F A AE + Q ++ L+ A A P+S+F VGA+ + G +LG N
Sbjct: 4 FYTSAQVAELVKQSHAADIIDFALNLLPQAAECAVVPVSQFKVGAIAIDVDGNFYLGANQ 63
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
E G + Q++HAEQ I++ ++ H+ V+ PCGHCRQFL ELR N+ I
Sbjct: 64 ECAGAAMAQTVHAEQSAISHAWARGATQIAHIVVNYTPCGHCRQFLNELRGAE--NLLIH 121
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPKER 184
+S + + H LPD F P DL D+P LL+ G++ + + +T P
Sbjct: 122 LPHSRDNRLHD---YLPDSFSPKDL---DIPERLLDKQNQGLTLS-----VDDTATP--- 167
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L AAL+AAN SHAPYS +GVA+ G I+ G Y E+AAYNP+L P+Q AL
Sbjct: 168 LVQAALDAANCSHAPYSHAYAGVALQCSNGEIFAGGYAENAAYNPTLPPLQNAL 221
>gi|416892518|ref|ZP_11923856.1| cytidine deaminase [Aggregatibacter aphrophilus ATCC 33389]
gi|347814797|gb|EGY31445.1| cytidine deaminase [Aggregatibacter aphrophilus ATCC 33389]
Length = 300
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 146/287 (50%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K LTV QL L+ A A PIS F+VGA+ G SG + G
Sbjct: 41 PHFAVQ-----HLCNKYQLTVQQLALALLPIAACYATTPISNFNVGAITTGVSGNFYFGA 95
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E ++ + V+ PCGHCRQF+ EL + I
Sbjct: 96 NQEFSKTDIQQTIHAEQSAISHAWMRGEKQITDITVNYTPCGHCRQFMNELNGADKLQIH 155
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +++ L LPD FGP +L ++ L LL+ H N ++ N TE+P
Sbjct: 156 LP-----HSQHNLLHQYLPDAFGPKNL---NIHLHLLDQHDNQLTLN--------TEDP- 198
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ AL AN++HAPYS GVAI + IY GSY E+AA+NPSL +Q AL +
Sbjct: 199 --VTAQALTMANQAHAPYSNTFHGVAIQTQDRQIYHGSYAENAAFNPSLPALQVALNHLI 256
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+G + I ++EK ++ + A LL + + K E+
Sbjct: 257 LSGEE------VQNITRVVMMEKSASLSYKAMAEELLGTLTNVKLEY 297
>gi|163801033|ref|ZP_02194933.1| cytidine deaminase [Vibrio sp. AND4]
gi|159175382|gb|EDP60179.1| cytidine deaminase [Vibrio sp. AND4]
Length = 295
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 138/256 (53%), Gaps = 24/256 (9%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L+ A + IS+F+VGA+ G +GR++ G N+EF G+ L Q++HAEQ I++ +
Sbjct: 56 LLPFAAAFSYASISEFYVGAIVRGLTGRLYFGANMEFFGVQLGQTVHAEQCAISHAWMKG 115
Query: 91 EPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
E ++ + ++ +PCGHCRQF+ EL ++ I + ER+ L H LP+ FGP D
Sbjct: 116 EHGVKDITINYSPCGHCRQFMNELSTAKELKIQLP-----EREEQSLHHYLPEAFGPAD- 169
Query: 151 LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIM 210
L + L+ E +C + + L AA+ A N SHAPY+ SG+A+
Sbjct: 170 LGIESGLMTEVKHEF----VC--------DEDDTLIQAAINAMNISHAPYTNNLSGIALE 217
Query: 211 DCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVV 270
G ++ G+Y E+AA+NPSL P+Q AL+ L AG ++ I AAALVE +
Sbjct: 218 MNNGRVFHGAYAENAAFNPSLPPLQVALIQILMAGEQ------FDNIKAAALVENSQGKI 271
Query: 271 RQEHAARLLLQVISPK 286
+ L+ ++P
Sbjct: 272 SHLADTQSTLETLNPD 287
>gi|388601179|ref|ZP_10159575.1| cytidine deaminase [Vibrio campbellii DS40M4]
Length = 295
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 142/272 (52%), Gaps = 34/272 (12%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
+ L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+EF G+ L Q++HAE
Sbjct: 45 TNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANMEFFGVQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E ++ + ++ +PCGHCRQF+ EL + I + ER+ L H
Sbjct: 105 QCAISHAWMKGERGVKDITINYSPCGHCRQFMNELSTAKQLKIQLP-----EREEKSLHH 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETE-----NPKERLKYAALEAAN 194
LP+ FGP DL + +G + E + + + L A+ A N
Sbjct: 160 YLPEAFGPADL------------------GIESGLMAEVKHEFVCDEDDALIQKAVNAMN 201
Query: 195 KSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254
SHAPY+ SG+A+ G +++G+Y E+ A+NPSL P+Q AL+ L AG +
Sbjct: 202 ISHAPYTNNLSGIALEMNSGLVFQGAYAENVAFNPSLPPLQVALIQILMAGEK------F 255
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
E I AAALVE + + L+ ++P
Sbjct: 256 EDIKAAALVENSQGKISHLADTQSTLEALNPD 287
>gi|429092948|ref|ZP_19155556.1| Cytidine deaminase [Cronobacter dublinensis 1210]
gi|426742244|emb|CCJ81669.1| Cytidine deaminase [Cronobacter dublinensis 1210]
Length = 294
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 128/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
IS F+VGAV G SG ++ G N+EF G + Q+IHAEQ IT+ + E L + V+
Sbjct: 68 ISHFNVGAVARGLSGTLYFGANMEFRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R L LPD FGP DL K L+ +T
Sbjct: 128 PCGHCRQFMNELNSGLTLRINLPG-----RAPSKLGDYLPDAFGPRDLDIK--TLIFDTE 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + + L AA+ AAN+SHAPYS+ PSG+AI +G ++ GSY
Sbjct: 181 NHGYALH------------GDALTQAAIAAANRSHAPYSQSPSGLAIETRDGAVFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NPSL P+QAAL G + I A L E+ DA + Q A L
Sbjct: 229 ENAAFNPSLPPLQAALNLLCL------NGYAWRDIQRAVLAERSDAAIVQRDATAATLNA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|114462386|gb|ABI75122.1| cytidine deaminase [Dolichospermum circinale AWQC131C]
Length = 325
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 27/295 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLG--------SSGR 58
VI+++ S + G+ + L+ L+ A AR PIS+F+VGA+ LG SG
Sbjct: 30 VIDSSVVTSWLDRLGIDIGTLMIQLLPVATAYARVPISQFYVGAIALGKPKSNNQVDSGT 89
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G ++EF G L S+HAEQ N L+ E LQ LA + APCG+CRQFL E+ +
Sbjct: 90 LYFGADMEFVGQALSFSVHAEQSATINAWLHGETGLQALATNEAPCGYCRQFLYEMATVN 149
Query: 119 -DINICITSINSN-ERKY--HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQ 174
D I + S + E+ Y + L + LP+ FGP +L L+ET +G+ C
Sbjct: 150 QDFVILLKSNKTQIEQTYTSNKLPYFLPEAFGPPNL--GLTSGLMETVFHGL--ETC--- 202
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+ + + + AAL AAN+S+APY+K +GVA+ D GNI+ G Y E+AAY+ S+ P+
Sbjct: 203 ---STDDTDDVVLAALSAANQSYAPYTKNFAGVALKDSHGNIFTGRYAENAAYHSSMSPM 259
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
++AL Y+ I A LVE E + Q L I+PK +
Sbjct: 260 ESALT-YM---NMNRYPQSLFDICDAVLVEAE-TTISQMSVTESFLSSIAPKVDL 309
>gi|383145475|gb|AFG54325.1| Pinus taeda anonymous locus 2_8265_01 genomic sequence
Length = 133
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 96/135 (71%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + + +++GLT +Q L TLVK Q LAR PIS+F VGAVGLG+SGRIF G N+EF
Sbjct: 1 IEADEVQRLCKEAGLTEMQYLATLVKPTQLLARAPISRFCVGAVGLGASGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL+ S+HAEQFL+ N + E +L+ +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLNHSVHAEQFLVANAAQHGEAQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ R L + LP
Sbjct: 121 HAETRS---LLYFLP 132
>gi|417844129|ref|ZP_12490191.1| Cytidine deaminase [Haemophilus haemolyticus M21127]
gi|341947680|gb|EGT74323.1| Cytidine deaminase [Haemophilus haemolyticus M21127]
Length = 292
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 145/281 (51%), Gaps = 26/281 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ E + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVEQLCRDFELTPLKLAMHLLPIAASYSHTAISHFNVGAIAIGEQGNFYFGANQEFSNS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL L D FGP D LD V LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLTDAFGPKD-LDIAVHLLAEENHDLVA------------DHQDNLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NNK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
ERI+ A EK + + A LL + S K E++
Sbjct: 253 KLSDIERIMMA---EKALKLSHKTMAEALLSTLTSVKLEYH 290
>gi|148826823|ref|YP_001291576.1| cytidine deaminase [Haemophilus influenzae PittGG]
gi|167006537|sp|A5UEI7.1|CDD_HAEIG RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|148718065|gb|ABQ99192.1| cytidine deaminase [Haemophilus influenzae PittGG]
Length = 292
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLAEENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDR 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|294635522|ref|ZP_06714002.1| cytidine deaminase [Edwardsiella tarda ATCC 23685]
gi|451964334|ref|ZP_21917600.1| cytidine deaminase [Edwardsiella tarda NBRC 105688]
gi|291091091|gb|EFE23652.1| cytidine deaminase [Edwardsiella tarda ATCC 23685]
gi|451316857|dbj|GAC62962.1| cytidine deaminase [Edwardsiella tarda NBRC 105688]
Length = 295
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 133/242 (54%), Gaps = 23/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ GSSG ++ G N+EF G P+ Q+IHAEQ IT+ L E L + V+
Sbjct: 67 PISHFQVGAIVQGSSGNLYFGANMEFAGAPMQQTIHAEQCAITHAWLRGERALASITVNC 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + I + R+ L LPD FGP DL K LLL+
Sbjct: 127 TPCGHCRQFMNELNSGTQLPIHLPG-----RQAATLGDYLPDAFGPRDLQIKT--LLLDH 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G++ + L AAL AAN SHAPYS+ SGVA ++ IY G Y
Sbjct: 180 VHHGLTL---------AHADDDPLLLAALAAANASHAPYSQAYSGVA-LETAHAIYAGRY 229
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+QAALV AG I A LVE + AV+ Q+ A + LQ
Sbjct: 230 AENAAFNPSLPPLQAALVLLNMAGEPTSA------IRRATLVESQSAVLSQQAATQATLQ 283
Query: 282 VI 283
+
Sbjct: 284 AL 285
>gi|419803034|ref|ZP_14328212.1| cytidine deaminase [Haemophilus parainfluenzae HK262]
gi|385188830|gb|EIF36303.1| cytidine deaminase [Haemophilus parainfluenzae HK262]
Length = 291
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 144/281 (51%), Gaps = 26/281 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + S+ + LT +QL L+ + PIS+FHVGA+ +G SG + G N EF G
Sbjct: 33 AEKVRSICDEFKLTPVQLGLALLPVTACYSHTPISEFHVGAIAIGESGDFYFGANQEFQG 92
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL D+ I + +
Sbjct: 93 SSMAQTIHAEQSAISHAWLRNESRITDIVVNYTPCGHCRQFMNELYQAEDLKIHLPHSQN 152
Query: 130 NERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAA 189
N PL LPD FGP L D+ LLL + G + ++ + A
Sbjct: 153 N-----PLLQYLPDSFGPKA-LGVDL-LLLNKEEQGFTL-----------TTEDEVANKA 194
Query: 190 LEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSG 248
+ AN++H+PYSK P GV I+ G + G Y E+AA+NPSL +Q A+ AYL +
Sbjct: 195 ILGANRAHSPYSKSPHGVGILFKNGEMICGRYAENAAFNPSLPAMQTAINFAYL----NQ 250
Query: 249 GGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ER+V A EK + ++ A +LL + K E+
Sbjct: 251 LDVSKIERVVFA---EKPLRLSHRKMAEQLLKSLCKVKMEY 288
>gi|170718978|ref|YP_001784141.1| cytidine deaminase [Haemophilus somnus 2336]
gi|189081899|sp|B0USP2.1|CDD_HAES2 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|168827107|gb|ACA32478.1| cytidine deaminase [Haemophilus somnus 2336]
Length = 303
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 130/248 (52%), Gaps = 24/248 (9%)
Query: 18 QKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIH 77
+K +T +L L+ + A P IS F VGA+ G SG + G N EF + Q++H
Sbjct: 52 EKYHMTDKELALILLPVSACYANPTISHFSVGAIAKGESGNFYFGANQEFCTTNIQQTVH 111
Query: 78 AEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
AEQ I++ + E ++ + V+ PCGHCRQF+ EL + + I + N L
Sbjct: 112 AEQSAISHAWMRRESKITEITVNYTPCGHCRQFMNELNSAETLRIHLPHSQDN-----LL 166
Query: 138 SHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSH 197
H LPD FGP++ L D L + N TE+P L AAL+AAN+SH
Sbjct: 167 HHYLPDAFGPHN-LQIDNRLFDKKAHNLFLI---------TEDP---LIQAALDAANQSH 213
Query: 198 APYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERI 257
APYSK SG+A+ + I++GSY E+AA+NPSL P+Q AL L G E I
Sbjct: 214 APYSKTYSGIALQLQDQQIFQGSYAENAAFNPSLPPLQTALNYLLL------NGNEVENI 267
Query: 258 VAAALVEK 265
A LVE+
Sbjct: 268 ARAVLVEQ 275
>gi|294141309|ref|YP_003557287.1| cytidine deaminase [Shewanella violacea DSS12]
gi|293327778|dbj|BAJ02509.1| cytidine deaminase [Shewanella violacea DSS12]
Length = 296
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 20/232 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + ++ + SGLT +LL L+ A LARPPIS FHVGA+ SG I++GGN+E
Sbjct: 32 IDAQQLAALVKASGLTEEKLLLALLPVAAALARPPISDFHVGAIAKAKSGDIYMGGNLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+ +PCGHCRQF+ EL + + I +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGETQIVDIVVNFSPCGHCRQFMNELVEGAKVKIHLP-- 149
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLL-LETHQNGMSFNLCNGQIPETENPKERLK 186
E+K PLSH LP FGP+D L+ PLL +TH +S + + I E
Sbjct: 150 ---EQKAQPLSHYLPYAFGPSD-LNVTSPLLSKQTHV--LSLDSSDPMIIE--------- 194
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AL+ A+ S+APY+ + V + +G + G Y E+AA+NPS+ P+Q AL
Sbjct: 195 --ALDHASLSYAPYTSSFAAVVLETDDGATFCGRYAENAAFNPSMLPMQMAL 244
>gi|310815542|ref|YP_003963506.1| Cytidine deaminase [Ketogulonicigenium vulgare Y25]
gi|308754277|gb|ADO42206.1| Cytidine deaminase [Ketogulonicigenium vulgare Y25]
Length = 325
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 144/288 (50%), Gaps = 29/288 (10%)
Query: 8 IEAAEAESMAQKSGLT-VLQLLPTLVKSAQTLARPPISKFHVGAVGLGS-SGRIFLGGNV 65
I A A+S+ + GL+ V +L+ L+ A+ +A PPIS FHVG VG + SG + LGGN+
Sbjct: 61 ITADHADSVIARHGLSGVEELMLLLLPDAEKVATPPISGFHVGTVGRAAGSGALTLGGNI 120
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA-PCGHCRQFLQELRNTSDINICI 124
EFPG L Q+IH E F+ T L E L H+A++AA PCGHCRQFL E + D+ +
Sbjct: 121 EFPGAHLGQAIHGEGFVTTRAFLRGE-SLSHIALTAAHPCGHCRQFLTEFESAPDLRL-- 177
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKER 184
I+ Y + LLP F P LET G + + P
Sbjct: 178 --IDPRGGTY-VMDDLLPFPFNPA---------ALET--AGAIPGHVAHDLALADGPARD 223
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L + A N++H PYS CPS + + +G G+ +ES AYNP++ P QAAL+ L
Sbjct: 224 LL---IHAGNRAHVPYSHCPSALVLELGDGTQVWGTSIESCAYNPTIMPAQAALIMLLDH 280
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
G S Y I A + AVV A+ LL ++P +
Sbjct: 281 GHS------YGDIARAWFARPKGAVVDLARASADLLAAVAPDASLTIL 322
>gi|445051410|ref|ZP_21366475.1| cytidine deaminase [Escherichia coli 95.0083]
gi|444665137|gb|ELW37280.1| cytidine deaminase [Escherichia coli 95.0083]
Length = 227
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 129/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V+
Sbjct: 1 MSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYT 60
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + D+ I + R+ H L L D FGP DL K LL++
Sbjct: 61 PCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLADAFGPKDLEIK--TLLMDEQ 113
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ GSY
Sbjct: 114 DHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYA 161
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A L+
Sbjct: 162 ENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSATLKA 215
Query: 283 I 283
+
Sbjct: 216 L 216
>gi|329123524|ref|ZP_08252087.1| cytidine deaminase [Haemophilus aegyptius ATCC 11116]
gi|327470340|gb|EGF15798.1| cytidine deaminase [Haemophilus aegyptius ATCC 11116]
Length = 292
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL + + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLADENHDLIA------------DHQDDLINQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|436660517|ref|ZP_20517121.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435020342|gb|ELM10752.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
Length = 242
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 19/229 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQ 235
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQ 241
>gi|385233062|ref|YP_005794404.1| cytidine deaminase 1, 2, 7 [Ketogulonicigenium vulgare WSH-001]
gi|343461973|gb|AEM40408.1| Cytidine deaminase 1, 2, 7, putative [Ketogulonicigenium vulgare
WSH-001]
Length = 311
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 144/288 (50%), Gaps = 29/288 (10%)
Query: 8 IEAAEAESMAQKSGLT-VLQLLPTLVKSAQTLARPPISKFHVGAVGLGS-SGRIFLGGNV 65
I A A+S+ + GL+ V +L+ L+ A+ +A PPIS FHVG VG + SG + LGGN+
Sbjct: 47 ITADHADSVIARHGLSGVEELMLLLLPDAEKVATPPISGFHVGTVGRAAGSGALTLGGNI 106
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA-PCGHCRQFLQELRNTSDINICI 124
EFPG L Q+IH E F+ T L E L H+A++AA PCGHCRQFL E + D+ +
Sbjct: 107 EFPGAHLGQAIHGEGFVTTRAFLRGE-SLSHIALTAAHPCGHCRQFLTEFESAPDLRL-- 163
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKER 184
I+ Y + LLP F P LET G + + P
Sbjct: 164 --IDPRGGTY-VMDDLLPFPFNPA---------ALET--AGAIPGHVAHDLALADGPARD 209
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L + A N++H PYS CPS + + +G G+ +ES AYNP++ P QAAL+ L
Sbjct: 210 LL---IHAGNRAHVPYSHCPSALVLELGDGTQVWGTSIESCAYNPTIMPAQAALIMLLDH 266
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
G S Y I A + AVV A+ LL ++P +
Sbjct: 267 GHS------YGDIARAWFARPKGAVVDLARASADLLAAVAPDASLTIL 308
>gi|323497420|ref|ZP_08102438.1| cytidine deaminase [Vibrio sinaloensis DSM 21326]
gi|323317503|gb|EGA70496.1| cytidine deaminase [Vibrio sinaloensis DSM 21326]
Length = 295
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 141/268 (52%), Gaps = 24/268 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL +L L+ A + PIS F VGA+ G SGR++ G NVE G L Q++HAE
Sbjct: 45 SGLKDDELRVALLPFAAAYSYAPISNFFVGAIVRGLSGRLYFGANVEILGAQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E + + ++ +PCGHCRQF+ EL + + + +R L
Sbjct: 105 QAAISHAWMKGEQGISDITINFSPCGHCRQFMNELTTADKLVVQLP-----QRDEKTLQE 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP+DL Q+G+ + +G+ +T+ E ++ A+ A N+SHAP
Sbjct: 160 YLPESFGPSDL----------GIQSGLMSTVDHGK--QTQETDEMVQ-KAVGALNRSHAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259
Y+K SGV++ G +Y G+Y E+AA+NPSL P+Q A++ L G S I +
Sbjct: 207 YTKNLSGVSLKLNTGKVYLGAYAENAAFNPSLPPLQVAMIQLLLDGQS------LFDIES 260
Query: 260 AALVEKEDAVVRQEHAARLLLQVISPKC 287
AAL E D + + L+ I+P
Sbjct: 261 AALAEMADGTISHLADTQATLEAINPDI 288
>gi|376338242|gb|AFB33666.1| hypothetical protein 2_8265_01, partial [Abies alba]
Length = 133
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 95/135 (70%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + + +++GL+ +Q L TLVK Q LAR PISKF VGAVGLGSSGRIF G N+EF
Sbjct: 1 IEADEVQRLCKEAGLSEIQYLATLVKPTQLLARAPISKFCVGAVGLGSSGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL+ S+HAEQFL+ N + E +L +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLNHSVHAEQFLVANAAQHGELQLTFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ R L + LP
Sbjct: 121 HAETRS---LLYFLP 132
>gi|113970746|ref|YP_734539.1| cytidine deaminase [Shewanella sp. MR-4]
gi|122943733|sp|Q0HHI5.1|CDD_SHESM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|113885430|gb|ABI39482.1| cytidine deaminase [Shewanella sp. MR-4]
Length = 296
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 135/231 (58%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + Q S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQQLAELVQSSKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL I I + S
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVEGGQIKIHLPSQ 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
+S H LS+ LP FGP D L+ PLL++ H+ + + + + E
Sbjct: 152 DS-----HLLSYYLPYAFGPKD-LNVQSPLLVK-HETEFALDSSDPMVIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AL+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -ALDHAGLSYAPYTQSYAAVVLETSDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|68250135|ref|YP_249247.1| cytidine deaminase [Haemophilus influenzae 86-028NP]
gi|145629576|ref|ZP_01785374.1| cytidine deaminase [Haemophilus influenzae 22.1-21]
gi|145636055|ref|ZP_01791725.1| cytidine deaminase [Haemophilus influenzae PittHH]
gi|145639057|ref|ZP_01794665.1| cytidine deaminase [Haemophilus influenzae PittII]
gi|386265796|ref|YP_005829288.1| Cytidine deaminase [Haemophilus influenzae R2846]
gi|81335441|sp|Q4QK60.1|CDD_HAEI8 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|68058334|gb|AAX88587.1| cytidine deaminase [Haemophilus influenzae 86-028NP]
gi|144978419|gb|EDJ88183.1| cytidine deaminase [Haemophilus influenzae 22.1-21]
gi|145270577|gb|EDK10510.1| cytidine deaminase [Haemophilus influenzae PittHH]
gi|145272029|gb|EDK11938.1| cytidine deaminase [Haemophilus influenzae PittII]
gi|309751013|gb|ADO80997.1| Cytidine deaminase [Haemophilus influenzae R2866]
gi|309973032|gb|ADO96233.1| Cytidine deaminase [Haemophilus influenzae R2846]
Length = 292
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTPLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLAEENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|229846798|ref|ZP_04466905.1| cytidine deaminase [Haemophilus influenzae 7P49H1]
gi|229810287|gb|EEP46006.1| cytidine deaminase [Haemophilus influenzae 7P49H1]
Length = 292
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 144/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ E + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVEQLCRDFELTPLKLAMHLLPIAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL + + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLADENHDLIA------------DHQDDLINQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDMVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|345300064|ref|YP_004829422.1| Cytidine deaminase [Enterobacter asburiae LF7a]
gi|345094001|gb|AEN65637.1| Cytidine deaminase [Enterobacter asburiae LF7a]
Length = 294
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 145/277 (52%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ Q +GL L L+ A AR +S F+VGA+ G SG + GGN+E
Sbjct: 32 LLTAEQVTTLKQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGTWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGETALSAITVNYTPCGHCRQFMNELNSGLQLR----- 146
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
IN R H L LPD FGP DL K LL++ +G + + + L
Sbjct: 147 INLPGRAPHTLGDYLPDAFGPKDLDIK--TLLMDEQDHGFALS------------GDALS 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 EAAIAAANKSHTPYSKSPSGVALQCRDGRIFSGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L E DA + Q A L+ +
Sbjct: 252 Y-----DYPDIQRAILAEIADAPLIQWDATAATLKAL 283
>gi|114047973|ref|YP_738523.1| cytidine deaminase [Shewanella sp. MR-7]
gi|123326413|sp|Q0HTT9.1|CDD_SHESR RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|113889415|gb|ABI43466.1| cytidine deaminase [Shewanella sp. MR-7]
Length = 296
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 135/231 (58%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + Q S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQQLAELVQSSQMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL I I + S
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVEGGQIKIHLPSQ 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
+S H LS+ LP FGP D L+ PLL++ H+ + + + + E
Sbjct: 152 DS-----HLLSYYLPYAFGPKD-LNVQSPLLVK-HETEFALDSSDPMVIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AL+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -ALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|334124846|ref|ZP_08498841.1| cytidine deaminase [Enterobacter hormaechei ATCC 49162]
gi|333387917|gb|EGK59108.1| cytidine deaminase [Enterobacter hormaechei ATCC 49162]
Length = 294
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 147/286 (51%), Gaps = 25/286 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ Q +GL L L+ A AR +S F+VGA+ G SG + GGN+E
Sbjct: 32 LLTADQVTTLKQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGTWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL + ++
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKALRAITVNYTPCGHCRQFMNELNSGLELR----- 146
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
IN R H L LPD FGP DL K + + E H +S + L
Sbjct: 147 INLPGRAPHTLGDYLPDAFGPKDLEIKTLLMDEEDHGYALS--------------GDALS 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYSK PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 EAAIAAANKSHTPYSKSPSGVALECRDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF 292
Y I A L E DA + Q A L+ + + V
Sbjct: 252 Y-----DYPDIQRAILAEIADAPLIQWDATAATLKALGCSALYRVL 292
>gi|260580817|ref|ZP_05848643.1| cytidine deaminase [Haemophilus influenzae RdAW]
gi|260092634|gb|EEW76571.1| cytidine deaminase [Haemophilus influenzae RdAW]
Length = 292
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 142/280 (50%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLAEENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ ++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|376338244|gb|AFB33667.1| hypothetical protein 2_8265_01, partial [Pinus cembra]
Length = 133
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 95/135 (70%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + + +++GL+ +Q L TLVK Q LAR PIS+F VGAVGLG+SGRIF G N+EF
Sbjct: 1 IEADEVQRLCKEAGLSEMQYLATLVKPTQLLARVPISRFCVGAVGLGASGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL+ S+HAEQFL+ N E +L+ +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLNHSVHAEQFLVANAAQQGEAQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ R L + LP
Sbjct: 121 HAETRS---LLYFLP 132
>gi|411009582|ref|ZP_11385911.1| cytidine deaminase [Aeromonas aquariorum AAK1]
Length = 293
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 126/242 (52%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 66 PISKFFVGAIACGLSGNWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 125
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + L LP FGP DL D+ L +
Sbjct: 126 TPCGHCRQFMNELSTAKTLKVSLPD------DLSALQSFLPHSFGPADL---DITDALMS 176
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q+ L E+E+P L AAL AA +S+APYS+ + VA+ +G I+ G Y
Sbjct: 177 PQSHDELQL------ESEDP---LWQAALAAARQSYAPYSQGYAAVALQFADGRIFCGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + GG I A L+E +D + Q+ +AR L+
Sbjct: 228 AENAAFNPSLPPMQ------MACAHAVLGGEDLATIRRAVLLESKDGQISQQDSARATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|423109340|ref|ZP_17097035.1| cytidine deaminase [Klebsiella oxytoca 10-5243]
gi|423115277|ref|ZP_17102968.1| cytidine deaminase [Klebsiella oxytoca 10-5245]
gi|376381363|gb|EHS94100.1| cytidine deaminase [Klebsiella oxytoca 10-5245]
gi|376383534|gb|EHS96262.1| cytidine deaminase [Klebsiella oxytoca 10-5243]
Length = 294
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 148/285 (51%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++ A + ++ +GL L L+ A AR +S F+VGA+ G SG
Sbjct: 24 LADPHFPALLNADQVAALQSATGLDEDALAFALLPLAAACARTDLSHFNVGAIARGISGT 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLLAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHSLQHYLPDAFGPKDLNIKT--LLMDEQNHGFPLS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ H PYS PSGVA+ +G I+ GSY E+AAYNP+L P+Q AL
Sbjct: 188 ---GDALAQAAIQAANRCHMPYSHSPSGVALELKDGTIFTGSYAENAAYNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
L+ G Y I A L EK DA + Q A L+ +
Sbjct: 245 -NLLSLNGY-----DYPDIQRAVLAEKADAALIQWDATAATLKAL 283
>gi|16273260|ref|NP_439501.1| cytidine deaminase [Haemophilus influenzae Rd KW20]
gi|1168859|sp|P44325.1|CDD_HAEIN RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|1574812|gb|AAC22997.1| cytidine deaminase (cdd) [Haemophilus influenzae Rd KW20]
Length = 292
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 142/280 (50%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLAEENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ ++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|323491328|ref|ZP_08096513.1| cytidine deaminase [Vibrio brasiliensis LMG 20546]
gi|323314454|gb|EGA67533.1| cytidine deaminase [Vibrio brasiliensis LMG 20546]
Length = 295
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + SG+ L L+ A + P+S F+VGA+ G SG+++ G NVE
Sbjct: 32 TLSAEQFEQLLTISGMEDADLRVALLPFAAAYSYAPLSNFYVGAIVRGVSGKLYFGANVE 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL + I +
Sbjct: 92 FSGVQLGQTVHAEQSAISHAWMKGEQGVADITINFSPCGHCRQFMNELSTADKLRIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + L+ T +G C+ Q + L
Sbjct: 151 ----ERDSKSLQEYLPESFGPADLGIESA--LMTTVDHGKQ---CDEQ--------DELV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
+A++A N+SHAPY+ SGVAI G +Y+G+Y E+AA+NPSL P+Q ALV
Sbjct: 194 QSAIDALNRSHAPYTHNLSGVAIKMNNGKVYQGAYAENAAFNPSLPPLQVALVQ------ 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
E+I +AALVE + + + L+ I+P
Sbjct: 248 LLLDRQDLEQIHSAALVEAQGGTISHLANTQATLEAINPDI 288
>gi|260582679|ref|ZP_05850467.1| cytidine deaminase [Haemophilus influenzae NT127]
gi|319897005|ref|YP_004135200.1| cytidine/deoxycytidine deaminase [Haemophilus influenzae F3031]
gi|260094245|gb|EEW78145.1| cytidine deaminase [Haemophilus influenzae NT127]
gi|317432509|emb|CBY80867.1| cytidine/deoxycytidine deaminase [Haemophilus influenzae F3031]
Length = 292
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTPLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL + + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLADENHDLIA------------DHQDDLINQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|157144917|ref|YP_001452236.1| cytidine deaminase [Citrobacter koseri ATCC BAA-895]
gi|167006530|sp|A8AE87.1|CDD_CITK8 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|157082122|gb|ABV11800.1| hypothetical protein CKO_00646 [Citrobacter koseri ATCC BAA-895]
Length = 294
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 142/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ ++SGL L L+ A AR +S F+VGA+ G SG + GGN+E
Sbjct: 32 MLTAEQVSTLKRESGLDEDALAFALLPLAAACARTDLSHFNVGAIARGISGTWYFGGNME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I + L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAIGHAWLRGEKGLAAITVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RVPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFALE------------GDALT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANK H PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 193 QAAIAAANKCHMPYSYSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGALNLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 248 -NLNGYDYPDIQRAILAEKADAPLIQWDATAATLKAL 283
>gi|378697586|ref|YP_005179544.1| cytidine/deoxycytidine deaminase [Haemophilus influenzae 10810]
gi|301170102|emb|CBW29706.1| cytidine/deoxycytidine deaminase [Haemophilus influenzae 10810]
Length = 292
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTPLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL + + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLADENHDLVA------------DHQDDLVNQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|419844968|ref|ZP_14368255.1| cytidine deaminase [Haemophilus parainfluenzae HK2019]
gi|386416894|gb|EIJ31386.1| cytidine deaminase [Haemophilus parainfluenzae HK2019]
Length = 291
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 143/279 (51%), Gaps = 26/279 (9%)
Query: 12 EAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLP 71
+ S+ + LT +QL L+ A + PIS+FHVGA+ +G SG + G N EF G
Sbjct: 35 KVRSICDEFKLTPVQLGLALLPVAACYSHTPISEFHVGAIAIGESGNFYFGANQEFQGSS 94
Query: 72 LHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNE 131
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL + I + +N
Sbjct: 95 MAQTIHAEQSAISHAWLRNESRITDIVVNYTPCGHCRQFMNELYQAEGLKIHLPHSQNN- 153
Query: 132 RKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALE 191
PL LPD FGP L D+ LLL + G T ++ + A+
Sbjct: 154 ----PLPQYLPDSFGPKA-LGVDL-LLLNKEEQGF-----------TLTTEDEVANKAIL 196
Query: 192 AANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGGG 250
AN++H+PYSK P GV I+ G + G Y E+AA+NPSL +Q A+ AYL +
Sbjct: 197 GANRAHSPYSKSPHGVGILFKNGEMICGRYAENAAFNPSLPAMQTAINFAYL----NQLD 252
Query: 251 GGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ER+V A EK + ++ A +LL + K E+
Sbjct: 253 VSKIERVVFA---EKPLRLSHRKMAEQLLKSLCKVKMEY 288
>gi|390435185|ref|ZP_10223723.1| cytidine deaminase [Pantoea agglomerans IG1]
Length = 296
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F V+ A + S+ Q++ + L L+ A A +S F+VGA+ G SG
Sbjct: 24 LDDPGFQAVLSADQVASLQQQTQMDADALALALLPLAAACAVATVSHFNVGAIARGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF G PL Q++HAEQ IT+ L E +L+ + V+ PCGHCRQF+ EL + +
Sbjct: 84 WYFGANMEFIGTPLQQTVHAEQSAITHAWLRGESQLETITVNYTPCGHCRQFMNELNSGT 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+I I + +R L+ LPD FGP DL D+ L ++ +G + E
Sbjct: 144 NIRISLP-----QRAISTLADYLPDAFGPRDL---DITTFLMD-------SVDHGYVAE- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA+ AAN SHAPYS+ +GVA++ G I G Y E+AA+NPS P+QAAL
Sbjct: 188 ---GDELVQAAVAAANASHAPYSQSHAGVALLTATGAIVTGRYAENAAFNPSFPPLQAAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
V GG +I A L E E+A + Q A + L+
Sbjct: 245 VLL------NMQGGDVRQIKKAVLTEVENATLSQFAATQATLKTF 283
>gi|157375753|ref|YP_001474353.1| cytidine deaminase [Shewanella sediminis HAW-EB3]
gi|189081905|sp|A8FWK2.1|CDD_SHESH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|157318127|gb|ABV37225.1| Cytidine deaminase [Shewanella sediminis HAW-EB3]
Length = 296
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + ++ KSGL +LL L+ A LARPPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQQLSTLITKSGLAESELLIALLPVAAALARPPISEFYVGAIAKGKSGDIYMGANMEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G L S+HAEQ I++ L+ E +++ + V+ +PCGHCRQF+ EL + I +
Sbjct: 92 SGEALFHSVHAEQSAISHAWLSGERQIEDVIVNFSPCGHCRQFMNELVEGQKVKIHLP-- 149
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
E++ PLSH LP FGP+D L+ PLL + Q+ +S + + I E
Sbjct: 150 ---EQQTQPLSHYLPYAFGPSD-LNITEPLLTK-QQHELSLDSSDPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AL+ A+ S+APY+ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -ALDHASLSYAPYTNSYAAVVLETQDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|308187520|ref|YP_003931651.1| cytidine/deoxycytidine deaminase [Pantoea vagans C9-1]
gi|308058030|gb|ADO10202.1| cytidine/deoxycytidine deaminase [Pantoea vagans C9-1]
Length = 296
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F V+ A + ++ Q++ + L TL+ A + A +S F+VGA+ G SG
Sbjct: 24 LDDPDFHAVLSADQVAALQQQTQMDADTLALTLLPLAASCAVATVSHFNVGAIARGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF G P+ Q++HAEQ IT+ L E +L+ + V+ PCGHCRQF+ EL N +
Sbjct: 84 WYFGANMEFVGTPMQQTVHAEQSAITHAWLRGERQLETITVNYTPCGHCRQFMNELNNGT 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
I I + +R L+ LPD FGP DL D+ L + +G + E
Sbjct: 144 SIRISLP-----QRAISTLADYLPDAFGPRDL---DITTFLMDEVD-------HGYVAE- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA+ AAN SHAPYS+ +GVA++ + I G Y E+AA+NPS P+QAAL
Sbjct: 188 ---GDELVQAAVAAANASHAPYSQSHAGVALLTTDDKIVAGRYAENAAFNPSFPPLQAAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
V GG +I A L E E+A + Q A + L+
Sbjct: 245 VLL------NMQGGDVRQIKKAVLAEVENATLSQFAATQATLETF 283
>gi|195984454|gb|ACG63800.1| SxtB [Aphanizomenon sp. NH-5]
Length = 322
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 151/296 (51%), Gaps = 32/296 (10%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLG--------SSGR 58
VI+++ S + G+ + L+ L+ A AR PIS+F+VGA+ LG SG
Sbjct: 30 VIDSSVVTSWLDRLGIDIGTLMIQLLPVATAYARVPISQFYVGAIALGKPKSKNQVDSGT 89
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G ++EF G L S+HAEQ N L+ E LQ LA++ APCG+CRQFL E+ +
Sbjct: 90 LYFGADMEFVGQALSFSVHAEQSATINAWLHGETGLQALAINEAPCGYCRQFLYEMATVN 149
Query: 119 -DINICITSINSN-ERKY--HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQ 174
D I + S + E+ Y + L + LP+ FGP +L G++ L
Sbjct: 150 QDFVILLKSNKTQIEQTYTSNRLPYFLPEAFGPPNL--------------GLTSGLMEKV 195
Query: 175 IPETEN-PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
E + + AAL AAN+S+APY+K +GVA+ D GNI+ G Y E+AAY+ S+ P
Sbjct: 196 FHGLETCSTDDVVLAALSAANQSYAPYTKNFAGVALKDSHGNIFTGRYAENAAYHSSMSP 255
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+++AL Y+ I A LVE E + Q L I+PK +
Sbjct: 256 MESALT-YM---NMNRYPQSLFDICDAVLVEAE-TTISQISVTESFLSSIAPKVDL 306
>gi|145634342|ref|ZP_01790052.1| cytidine deaminase [Haemophilus influenzae PittAA]
gi|148825890|ref|YP_001290643.1| cytidine deaminase [Haemophilus influenzae PittEE]
gi|229844192|ref|ZP_04464333.1| cytidine deaminase [Haemophilus influenzae 6P18H1]
gi|167006536|sp|A5UBV9.1|CDD_HAEIE RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|145268322|gb|EDK08316.1| cytidine deaminase [Haemophilus influenzae PittAA]
gi|148716050|gb|ABQ98260.1| cytidine deaminase [Haemophilus influenzae PittEE]
gi|229813186|gb|EEP48874.1| cytidine deaminase [Haemophilus influenzae 6P18H1]
Length = 292
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTPLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL + + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLADENHDLIA------------DHQDDLINQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDMVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|365850372|ref|ZP_09390836.1| cytidine deaminase [Yokenella regensburgei ATCC 43003]
gi|364567379|gb|EHM45047.1| cytidine deaminase [Yokenella regensburgei ATCC 43003]
Length = 294
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 145/276 (52%), Gaps = 25/276 (9%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
A + ++ +GL L L+ A AR +S F+VGA+ G SG +LGGN+EF
Sbjct: 33 FTAHQVATLRAATGLDEDGLAFALLPVAAACARADLSHFNVGAIARGISGTWYLGGNMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL + ++ I
Sbjct: 93 LGATMQQTVHAEQSAISHAWLCGEKALKAITVNYTPCGHCRQFMNELNSGLELR-----I 147
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
N R+ L LPD FGP DL K LL++ +G + L
Sbjct: 148 NLPGREPATLKDYLPDAFGPKDLQIK--TLLMDAQDHGYPLE------------GDALAQ 193
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AA++AAN+SH PYS+ PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 194 AAIKAANRSHTPYSQSPSGVALECRDGTIFSGSYAENAAFNPTLPPLQGAL-NLLSLNGY 252
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L E+ DA + Q A L+ +
Sbjct: 253 -----DYADIQRALLAERPDAPLIQWDATAATLRAL 283
>gi|145632907|ref|ZP_01788640.1| cytidine deaminase [Haemophilus influenzae 3655]
gi|144986563|gb|EDJ93129.1| cytidine deaminase [Haemophilus influenzae 3655]
Length = 292
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGA+ +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTPLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL + + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLADENHDLIA------------DHQDDLINQAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNGDMVTGRYAENAAFNPSLPALQTALNFAYL----NDR 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLSDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|423124847|ref|ZP_17112526.1| cytidine deaminase [Klebsiella oxytoca 10-5250]
gi|376400292|gb|EHT12905.1| cytidine deaminase [Klebsiella oxytoca 10-5250]
Length = 294
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 132/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R+ H L H LPD FGP DL D+ +LL
Sbjct: 128 PCGHCRQFMNELNSGLALRIHLPG-----REAHSLQHYLPDAFGPKDL---DIKILLMDE 179
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
Q+ F L + L AA++AAN+ H PYS PSGVA+ +G ++ GSY
Sbjct: 180 QD-HGFPLSG----------DALAQAAIQAANRCHMPYSNSPSGVALELKDGTLFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAALIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|421725117|ref|ZP_16164317.1| cytidine deaminase [Klebsiella oxytoca M5al]
gi|410374115|gb|EKP28796.1| cytidine deaminase [Klebsiella oxytoca M5al]
Length = 294
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R+ H L H LPD FGP DL D+ LL
Sbjct: 128 PCGHCRQFMNELNSGLALRIHLPG-----REAHSLQHYLPDAFGPKDL---DIKTLLMDE 179
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
Q+ F L + L AA++AAN+ H PYS PSGVA+ +G ++ GSY
Sbjct: 180 QD-HGFPLSG----------DALAQAAIQAANRCHTPYSNSPSGVALELKDGTLFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAALIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|319776368|ref|YP_004138856.1| cytidine/deoxycytidine deaminase [Haemophilus influenzae F3047]
gi|317450959|emb|CBY87186.1| cytidine/deoxycytidine deaminase [Haemophilus influenzae F3047]
Length = 292
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 142/280 (50%), Gaps = 26/280 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
++ + + LT L+L L+ A + + IS F+VGAV +G G + G N EF
Sbjct: 35 SQVQQLCHNFELTPLKLAMHLLPLAASYSHTAISHFNVGAVAIGEQGDFYFGANQEFANS 94
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q+IHAEQ I++ L E R+ + V+ PCGHCRQF+ EL I+I + +N
Sbjct: 95 AIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN 154
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
PL LPD FGP D LD LL E + + ++ + ++ L A+
Sbjct: 155 -----PLHSYLPDAFGPKD-LDIAAHLLAEENHHLVA------------DHQDDLVNRAI 196
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGG 249
AAN+SH PYS P G+AI+ ++ G Y E+AA+NPSL +Q AL AYL +
Sbjct: 197 LAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPALQTALNFAYL----NDK 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
ERIV A EK + + A LL + S + E+
Sbjct: 253 KLTDIERIVMA---EKALKLSHKTMAETLLSTLTSVELEY 289
>gi|381403948|ref|ZP_09928632.1| cytidine deaminase [Pantoea sp. Sc1]
gi|380737147|gb|EIB98210.1| cytidine deaminase [Pantoea sp. Sc1]
Length = 296
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + G N+EF G PL Q++HAEQ IT+ L EP+L+ + V+
Sbjct: 68 VSHFNVGAIARGVSGAWYFGANMEFVGAPLQQTVHAEQSAITHAWLCGEPQLESITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I I + +R L+ LPD FGP DL D+ L
Sbjct: 128 PCGHCRQFMNELNSGTAIRISLP-----QRAVSTLADYLPDAFGPRDL---DISTFLMDR 179
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+ +G + + L AA+ AAN SHAPYS+ +GVA++ G+I G Y
Sbjct: 180 VD-------HGYVAA----GDELVQAAVAAANASHAPYSQSHAGVALLTVSGSIVTGRYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NPS P+QAALV GG +I A L E E+A + Q A + LQ
Sbjct: 229 ENAAFNPSFPPLQAALVRL------NMQGGDVRQIKRAVLAEAENATLSQFAATQATLQT 282
Query: 283 I 283
Sbjct: 283 F 283
>gi|397659034|ref|YP_006499736.1| cytidine deaminase [Klebsiella oxytoca E718]
gi|394347265|gb|AFN33386.1| Cytidine deaminase [Klebsiella oxytoca E718]
Length = 294
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R+ H L H LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLSLRIHLPG-----REAHSLQHYLPDAFGPKDLDIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA++AAN+ H PYS PSGVA+ +G ++ GSY
Sbjct: 181 DHGFPLS------------GDALAQAAIQAANRCHMPYSNSPSGVALELKDGTLFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAALIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|423103961|ref|ZP_17091663.1| cytidine deaminase [Klebsiella oxytoca 10-5242]
gi|376385603|gb|EHS98324.1| cytidine deaminase [Klebsiella oxytoca 10-5242]
Length = 294
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 129/241 (53%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R+ H L H LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLSLRIHLP-----RREAHSLQHYLPDAFGPKDLDIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA++AAN+ H PYS PSGVA+ +G ++ GSY
Sbjct: 181 DHGFPLS------------GDALAQAAIQAANRCHMPYSNSPSGVALELKDGTLFAGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGALNLL------SLNGYDYPDIQRAILAEKADAALIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|361068171|gb|AEW08397.1| Pinus taeda anonymous locus 2_8265_01 genomic sequence
Length = 133
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/135 (54%), Positives = 94/135 (69%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + + +++GL+ +Q L TLVK Q LAR PIS+F VGAVGLG+SGRIF G N+EF
Sbjct: 1 IEADEVQRLCKEAGLSEMQYLATLVKPTQLLARVPISRFCVGAVGLGASGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL+ +HAEQFL+ N E +L+ +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLNHFVHAEQFLVANAAQQGEAQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ R L + LP
Sbjct: 121 HAETRS---LLYFLP 132
>gi|283785952|ref|YP_003365817.1| cytidine deaminase [Citrobacter rodentium ICC168]
gi|282949406|emb|CBG89019.1| cytidine deaminase [Citrobacter rodentium ICC168]
Length = 294
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 129/242 (53%), Gaps = 25/242 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 67 PLSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + D+ I + R+ L LPD FGP DL K LL++
Sbjct: 127 TPCGHCRQFMNELNSGLDLRIHLPG-----REPLTLRDYLPDAFGPRDLQIKS--LLMDE 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + + L AA+ AAN+SH PYS+ PSGVA+ +G I+ GSY
Sbjct: 180 QDHGFAAQ------------GDALAQAAIAAANRSHMPYSQSPSGVALECKDGKIFSGSY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NP+L P+Q AL G + I A L EK DA + Q A L+
Sbjct: 228 AENAAFNPTLPPLQGALNLL------NLNGYAFADIQRAVLAEKADAALIQWDATAATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|402843926|ref|ZP_10892305.1| cytidine deaminase [Klebsiella sp. OBRC7]
gi|402275734|gb|EJU24870.1| cytidine deaminase [Klebsiella sp. OBRC7]
Length = 294
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R+ H L H LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLSLRIHLPG-----REAHSLQHYLPDAFGPKDLDIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA++AAN+ H PYS PSGVA+ +G ++ GSY
Sbjct: 181 DHGFPLS------------GDALAQAAIQAANRCHMPYSNSPSGVALELKDGTLFAGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAALIQWDATAATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|257464696|ref|ZP_05629067.1| cytidine deaminase [Actinobacillus minor 202]
gi|257450356|gb|EEV24399.1| cytidine deaminase [Actinobacillus minor 202]
Length = 301
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 135/262 (51%), Gaps = 21/262 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
++A S+ Q+ T ++L + A AR P+S F+VGA+ +G SG + G N EF
Sbjct: 38 LDAKFVASLCQQFNKTSVELALACLPIAACYARTPVSHFYVGAIVIGQSGYFYFGANQEF 97
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G + Q+IHAEQ I++ L E + + V+ PCGHCRQF+ EL + + I +
Sbjct: 98 EGESMAQTIHAEQSAISHAWLAGETAISDVIVNYTPCGHCRQFMNELNTANTLKIHLPHS 157
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
N L LPD FGP DL + V + ++F + E + P + +
Sbjct: 158 QKN-----ALHSYLPDAFGPKDLHIEKVLF----DKQPLAF------VSEMDRPTDDVSQ 202
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EAA +S+APYS SGVA++ I G Y E+AA+NPSL P+Q LA
Sbjct: 203 KAIEAAQQSYAPYSGSFSGVALLLANQQIVCGRYAENAAFNPSLPPLQ------LALNYQ 256
Query: 248 GGGGGGYERIVAAALVEKEDAV 269
G E+++ A +VE+ + +
Sbjct: 257 RMLGLADEKVLRAVMVERANTI 278
>gi|375261923|ref|YP_005021093.1| cytidine deaminase [Klebsiella oxytoca KCTC 1686]
gi|365911401|gb|AEX06854.1| cytidine deaminase [Klebsiella oxytoca KCTC 1686]
Length = 294
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L+ + V+
Sbjct: 68 LSHFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKSLRAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + + I + R+ H L H LPD FGP DL K LL++
Sbjct: 128 PCGHCRQFMNELNSGLSLRIHLPG-----REAHSLQHYLPDAFGPKDLDIK--TLLMDEQ 180
Query: 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G + + L AA++AAN+ H PYS PSGVA+ +G ++ GSY
Sbjct: 181 DHGFPLS------------GDALAQAAIQAANRCHMPYSNSPSGVALELKDGTLFTGSYA 228
Query: 223 ESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQV 282
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 229 ENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAALIQWDATVATLKA 282
Query: 283 I 283
+
Sbjct: 283 L 283
>gi|59712092|ref|YP_204868.1| cytidine deaminase [Vibrio fischeri ES114]
gi|75431626|sp|Q5E4R6.1|CDD_VIBF1 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|59480193|gb|AAW85980.1| cytidine/deoxycytidine deaminase [Vibrio fischeri ES114]
Length = 297
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 18/233 (7%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI + +S+ S L+ +L L+ A + PIS F+VGA+ G +G ++ G N+E
Sbjct: 34 VISKEQFQSLQADSQLSDKELRLALLPLAAAFSVAPISNFYVGAIARGLTGNLYFGANME 93
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
+ + L Q+IHAEQ I++ + E + ++ ++ +PCGHCRQF+ EL + + +
Sbjct: 94 YNDVQLGQTIHAEQSAISHAWIQGETGISNITINFSPCGHCRQFMNELTTADSLMVQLP- 152
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + G+ L + ETE+P R
Sbjct: 153 ----ERNEKSLQEYLPESFGPKDL----------GIEGGLLAPLSHNLALETESPLLR-- 196
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
ALEAAN+SHAPYS SG+A+ G +Y G Y E+AA+NPSL P+Q ALV
Sbjct: 197 -KALEAANRSHAPYSHNLSGIALEMESGEVYYGMYAENAAFNPSLPPLQVALV 248
>gi|343516707|ref|ZP_08753739.1| cytidine deaminase [Vibrio sp. N418]
gi|342795765|gb|EGU31474.1| cytidine deaminase [Vibrio sp. N418]
Length = 295
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 18/229 (7%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + + SGL +L L+ A + PIS F+VGA+ G SG+++ G N+E G L+
Sbjct: 39 DKLLELSGLEDAELRVALLPFAAAYSYAPISNFYVGAIARGLSGKLYFGANMEILGTQLN 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL + + + +R
Sbjct: 99 QAVHAEQSAISHAWMKGEQGISDITINFSPCGHCRQFMNELSTAQSLLVQLP-----QRD 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGP+DL ++G+ + +G+ + +P L AL A
Sbjct: 154 EKTLQEYLPESFGPSDL----------GIESGLMTTVDHGKQSDENDP---LVVKALAAL 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
N+SHAPYS+ SGVA+ +G Y G+Y E+AA+NPSL P+Q A+V L
Sbjct: 201 NRSHAPYSQNLSGVALRMKDGKEYIGAYAENAAFNPSLPPLQVAMVQLL 249
>gi|226701691|sp|B8CR83.1|CDD_SHEPW RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|212557301|gb|ACJ29755.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella
piezotolerans WP3]
Length = 296
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 133/231 (57%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
++A + E + S LT LL L+ A LAR PIS+F+VGA+ G SG I++G N+E
Sbjct: 32 LDAQQIEELKTASQLTEQDLLLALLPIAAALARVPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G L S+HAEQ I++ L+ E +++ + V+ +PCGHCRQF+ EL +NI +
Sbjct: 92 AGEALFHSVHAEQSAISHAWLSGERQIEDVIVNFSPCGHCRQFMNELVEGQKVNIHLP-- 149
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
E+K PLSH LP FGP D L+ PLL + Q+ +S + + I E
Sbjct: 150 ---EQKTQPLSHYLPYAFGPGD-LNITEPLLTK-QQHELSLDSSDPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
A++ A S+APY+K + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -AVDHAGLSYAPYTKNYAAVVLETKDGVTYSGRYAENAAFNPSMLPMQMAL 244
>gi|373949079|ref|ZP_09609040.1| Cytidine deaminase [Shewanella baltica OS183]
gi|386325082|ref|YP_006021199.1| Cytidine deaminase [Shewanella baltica BA175]
gi|333819227|gb|AEG11893.1| Cytidine deaminase [Shewanella baltica BA175]
gi|373885679|gb|EHQ14571.1| Cytidine deaminase [Shewanella baltica OS183]
Length = 296
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
++A + ++ S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 LDAQQLATLTSASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL S I+I + +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDIIVNASPCGHCRQFMNELVEGSKISIHLPA- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
++ HPL++ LP FGP D L+ PL+ + Q +F+ + I E
Sbjct: 151 ----QESHPLAYYLPYAFGPKD-LNVTSPLMAK-QQTEFAFDSADPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -GLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|418465921|ref|ZP_13036853.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755419|gb|EHK89583.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 298
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 139/277 (50%), Gaps = 31/277 (11%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F ++ + K LT QL L+ A A PIS F+VGAV G++G + G
Sbjct: 39 PHFAVQ-----HLCNKHQLTPKQLALLLLPIAACYATTPISHFNVGAVVHGTNGDFYFGA 93
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF + Q+IHAEQ I++ + E +L + V+ PCGHCRQF+ EL + + I
Sbjct: 94 NQEFCQTDIQQTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHCRQFMNELNSAETLQIH 153
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL ++ L LL+ H N + N ++P
Sbjct: 154 LPHSQNN-----LLQQYLPDAFGPKDL---NIQLRLLDQHDNQLFLN--------NDDP- 196
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
L AL AN++HAPYS G+AI IY GSY E+AA+NPSL +Q AL +
Sbjct: 197 --LVLQALAMANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLI 254
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
+G E IV +VEK + + + A LL
Sbjct: 255 LSGEE------VENIVRVVMVEKSNTLHYKAMAEELL 285
>gi|376338240|gb|AFB33665.1| hypothetical protein 2_8265_01, partial [Abies alba]
Length = 133
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 95/135 (70%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + +++GL+ Q L TLVK Q LAR PISKF VGAVGLG+SGRIF G N+EF
Sbjct: 1 IEADEVQRFCKEAGLSERQYLATLVKPTQLLARVPISKFCVGAVGLGASGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL+Q++HAEQFL+ N + E +L+ +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLNQTVHAEQFLVANAAQHGELQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ + L + LP
Sbjct: 121 HAETQS---LLYFLP 132
>gi|343506926|ref|ZP_08744383.1| cytidine deaminase [Vibrio ichthyoenteri ATCC 700023]
gi|342800962|gb|EGU36455.1| cytidine deaminase [Vibrio ichthyoenteri ATCC 700023]
Length = 295
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 18/229 (7%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + + SGL +L L+ A + PIS F+VGA+ G SG+++ G N+E G L
Sbjct: 39 DKLLELSGLEDAELRVALLPFAAAYSYAPISNFYVGAIVRGLSGKLYFGANMEIIGAQLG 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 99 QTVHAEQSAISHAWMKGEQGISDITINFSPCGHCRQFMNELSTAKELVVQLP-----QRD 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGP+DL ++G+ + +G+ E +P L AL A
Sbjct: 154 EKTLQEYLPESFGPSDL----------GIESGLMTTVDHGKHSEENDP---LVVKALAAL 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
N+SHAPYS+ SGVA+ +G Y G+Y E+AA+NPSL P+Q A+V L
Sbjct: 201 NRSHAPYSQNLSGVALRMKDGKEYLGAYAENAAFNPSLPPLQVAMVQLL 249
>gi|336311175|ref|ZP_08566142.1| cytidine deaminase [Shewanella sp. HN-41]
gi|335865391|gb|EGM70417.1| cytidine deaminase [Shewanella sp. HN-41]
Length = 296
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + + S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQQLAELTRASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL + + I I + +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVDGAKITIHLPAQ 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
+S H L++ LP FGP D L+ PLL + H+ + + + I E
Sbjct: 152 DS-----HSLAYYLPYAFGPTD-LNVTSPLLTK-HETEFALDSSDPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -GLDHAGLSYAPYTQSYAAVVLETSDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|167854762|ref|ZP_02477540.1| cytidine deaminase [Haemophilus parasuis 29755]
gi|167854060|gb|EDS25296.1| cytidine deaminase [Haemophilus parasuis 29755]
Length = 297
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 22/230 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + + Q L+ ++L + A AR P+S F VGAV +G SG + G N EF
Sbjct: 41 AEQVTTFCQTFNLSPVELALECLPIAACYARVPVSHFFVGAVAIGKSGNFYFGANQEFES 100
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
+ Q++HAEQ +++ + E L + V+ PCGHCRQF+ EL + + I + +
Sbjct: 101 DAMQQTVHAEQSAVSHAWIAGETALTDMVVNYTPCGHCRQFMNELNSAKQLKIHLPHSQN 160
Query: 130 NERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYA 188
N L LPD FGP DL +DK +L + QNG E + L+ A
Sbjct: 161 N-----LLHSYLPDAFGPKDLQIDK---VLFDPQQNGF------------EASGDALQQA 200
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
A+ AAN ++APYSK SGVA + C I G Y E+AA+NPS P+Q+AL
Sbjct: 201 AISAANLAYAPYSKAVSGVA-LQCGEQIITGRYAENAAFNPSFLPLQSAL 249
>gi|24374326|ref|NP_718369.1| cytidine deaminase Cdd [Shewanella oneidensis MR-1]
gi|81461004|sp|Q8EDG1.1|CDD_SHEON RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|24348875|gb|AAN55813.1| cytidine deaminase Cdd [Shewanella oneidensis MR-1]
Length = 296
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 24/234 (10%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQHLAELVKSSNMTESEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL + I I + S
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVDGGQIKIHLPSQ 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETE---NPKER 184
+S H LS+ LP FGP D L+ PLL++ ETE + +
Sbjct: 152 DS-----HLLSYYLPYAFGPKD-LNVQSPLLVKQ---------------ETEFALDSSDP 190
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ AL+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 191 MVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|423196375|ref|ZP_17182958.1| cytidine deaminase [Aeromonas hydrophila SSU]
gi|404632459|gb|EKB29074.1| cytidine deaminase [Aeromonas hydrophila SSU]
Length = 293
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 125/242 (51%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 66 PISKFFVGAIACGLSGNWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 125
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + L LP FGP DL D+ L +
Sbjct: 126 TPCGHCRQFMNELSTAKTLKVSLPD------DLSALQSFLPHSFGPADL---DITDALMS 176
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q+ L E+E+P L AAL AA +S+APYS+ + VA+ + I+ G Y
Sbjct: 177 PQSHDELQL------ESEDP---LWQAALAAARQSYAPYSQGYAAVALQFADERIFCGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + GG I A L+E +D + Q+ +AR L+
Sbjct: 228 AENAAFNPSLPPMQ------MACAHAVLGGEDLATIRRAVLLESKDGQISQQDSARATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|240949720|ref|ZP_04754055.1| cytidine deaminase [Actinobacillus minor NM305]
gi|240295978|gb|EER46654.1| cytidine deaminase [Actinobacillus minor NM305]
Length = 301
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 134/262 (51%), Gaps = 21/262 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
++A S+ Q+ T ++L + A AR P+S F+VGA+ +G SG + G N EF
Sbjct: 38 LDAKFVASLCQQFNKTSVELALACLPIAACYARTPVSHFYVGAIVIGQSGHFYFGANQEF 97
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G + Q+IHAEQ I++ L E + + V+ PCGHCRQF+ EL + + I +
Sbjct: 98 EGESMAQTIHAEQSAISHAWLAGETAISDVIVNYTPCGHCRQFMNELNTANTLKIHLPHS 157
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
N L LPD FGP DL + V + ++F + E + P + +
Sbjct: 158 QKN-----ALHSYLPDAFGPKDLHIEKVLF----DKQPLAF------VSEMDRPTDDVSQ 202
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EAA +S+APYS SGVA++ I G Y E+AA+NPSL P+Q LA
Sbjct: 203 KAIEAAQQSYAPYSSSFSGVALLLANQQIVCGRYAENAAFNPSLPPLQ------LALNYQ 256
Query: 248 GGGGGGYERIVAAALVEKEDAV 269
G E+++ A + E+ + +
Sbjct: 257 RMLGLADEKVLRAVMAERANTI 278
>gi|343511805|ref|ZP_08748958.1| cytidine deaminase [Vibrio scophthalmi LMG 19158]
gi|342797113|gb|EGU32769.1| cytidine deaminase [Vibrio scophthalmi LMG 19158]
Length = 295
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 18/229 (7%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + + SGL +L L+ A + PIS F+VGA+ G SG+++ G N+E G L
Sbjct: 39 DKLLELSGLEDAELRVALLPFAAAYSYAPISNFYVGAIVRGLSGKLYFGANMEIIGAQLG 98
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL ++ + + +R
Sbjct: 99 QTVHAEQSAISHAWMKGEQGISDITINFSPCGHCRQFMNELSTAQELVVQLP-----QRD 153
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LP+ FGP+DL ++G+ + +G+ + +P L AL A
Sbjct: 154 EKTLQEYLPESFGPSDL----------GIESGLMTTVDHGKQSDENDP---LVVKALAAL 200
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
N+SHAPYS+ SGVA+ +G Y G+Y E+AA+NPSL P+Q A+V L
Sbjct: 201 NRSHAPYSQNLSGVALRMKDGKEYIGAYAENAAFNPSLPPLQVAMVQLL 249
>gi|88857489|ref|ZP_01132132.1| cytidine deaminase [Pseudoalteromonas tunicata D2]
gi|88820686|gb|EAR30498.1| cytidine deaminase [Pseudoalteromonas tunicata D2]
Length = 309
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 23/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSS---- 56
+ + R V+ + E + Q+ T LQLL L+ A T A+PPIS+F+VGA+ +G
Sbjct: 24 ITQQRGVLPRVDVERLMQQYQCTFLQLLEALLPIAATFAKPPISEFYVGAIAVGEQINGF 83
Query: 57 GRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
G ++ G N+EF L +HAEQ + LN E + LA++ APCG+CRQF+ EL
Sbjct: 84 GALYFGANLEFNHQALSLVVHAEQAALNTAWLNGEKTISVLAITDAPCGYCRQFINELNQ 143
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+SDI I + + + LP FGP DL + E+ N LC +
Sbjct: 144 SSDITILLGG------ELIAFTEFLPRSFGPTDLGNH------ESFLNSRVARLC---VV 188
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
+TE +L + A +S+ PY+K + I+ +G+ Y G Y E+AAY+PSL P+Q+
Sbjct: 189 DTEFKVPQL----VSHAEQSYVPYTKNYASCMIVCQDGSKYYGRYAENAAYSPSLSPLQS 244
Query: 237 ALVAYLAAGGS 247
A+ + +G S
Sbjct: 245 AISQLILSGQS 255
>gi|300717552|ref|YP_003742355.1| Cytidine deaminase [Erwinia billingiae Eb661]
gi|299063388|emb|CAX60508.1| Cytidine deaminase [Erwinia billingiae Eb661]
Length = 294
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 25/240 (10%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAP 103
S F+VGA+ G SG ++ G N+EF G + Q++HAEQ +T+ + E L+ + V+ P
Sbjct: 69 SHFNVGALARGKSGHLYFGANMEFVGATMQQTVHAEQSAVTHAWMRGEASLEAITVNYTP 128
Query: 104 CGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ 163
CGHCRQF+ EL + + +NI + R L LPD FGP DL K LLL+
Sbjct: 129 CGHCRQFMNELNSGTALNIHLPG-----RAPATLGDYLPDAFGPRDLEIKT--LLLDDVD 181
Query: 164 NGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYME 223
+ +S + L AAL+AAN+SHAPY++ SGVA+ +G I+ GSY E
Sbjct: 182 HQLSIK------------GDALTQAALQAANRSHAPYTQAWSGVALQSADGAIFAGSYAE 229
Query: 224 SAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+AA+NPSL P+QAAL AG I A L E DA V Q A + L +
Sbjct: 230 NAAFNPSLPPLQAALNLLSLAGHD------VLTIQRAVLAEAPDARVIQRQATQATLHAL 283
>gi|423686251|ref|ZP_17661059.1| cytidine deaminase [Vibrio fischeri SR5]
gi|371494319|gb|EHN69917.1| cytidine deaminase [Vibrio fischeri SR5]
Length = 297
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 127/233 (54%), Gaps = 18/233 (7%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI + +S+ S L+ +L L+ A + PIS F+VGA+ G +G ++ G N+E
Sbjct: 34 VISKEQFQSLQADSQLSDKELRLALLPLAAAFSVAPISNFYVGAIARGLTGNLYFGANME 93
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
+ + L Q+IHAEQ I++ + E + + ++ +PCGHCRQF+ EL + + +
Sbjct: 94 YNDVQLGQTIHAEQSAISHAWIQGETGISDITINFSPCGHCRQFMNELTTADSLMVQLP- 152
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + G+ L + ET++P R
Sbjct: 153 ----ERNEKSLQEYLPESFGPKDL----------GIEGGLLAPLSHNLALETDSPLLR-- 196
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
ALEAAN+SHAPYS SG+A+ G +Y G Y E+AA+NPSL P+Q ALV
Sbjct: 197 -KALEAANRSHAPYSHNLSGIALEMESGEVYYGMYAENAAFNPSLPPLQVALV 248
>gi|213052358|ref|ZP_03345236.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
Length = 243
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 19/225 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GNTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTL 237
>gi|376338246|gb|AFB33668.1| hypothetical protein 2_8265_01, partial [Pinus mugo]
Length = 133
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 95/135 (70%), Gaps = 3/135 (2%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
IEA E + + +++GL+ +Q L TLVK Q LAR PIS+F VGAVGLG+SGRIF G N+EF
Sbjct: 1 IEADEVQRLCKEAGLSEMQYLITLVKPTQLLARAPISRFCVGAVGLGASGRIFKGVNLEF 60
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
GLPL ++HAEQFL+ N + E +L+ +AVSAAPCGHCRQFLQE+ +INI I
Sbjct: 61 EGLPLSHTVHAEQFLVANAAQHGEVQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADE 120
Query: 128 NSNERKYHPLSHLLP 142
++ + L + LP
Sbjct: 121 HAETQS---LLYFLP 132
>gi|354596936|ref|ZP_09014953.1| Cytidine deaminase [Brenneria sp. EniD312]
gi|353674871|gb|EHD20904.1| Cytidine deaminase [Brenneria sp. EniD312]
Length = 295
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 133/262 (50%), Gaps = 35/262 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS+F VGA+ G SG + G N+EF G PL ++HAEQ I++ E L + V+
Sbjct: 67 PISRFQVGAIAQGVSGNFYFGANMEFSGAPLQHTVHAEQSAISHAWSRNETGLAAITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL S + I + R+ L H LPD FGP DL L++
Sbjct: 127 TPCGHCRQFMNELNAASTLRIQLPG-----RQPALLGHYLPDAFGPGDL--NTSARLMDE 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G + ++ L AAL+AAN+SHAPY++ SGVA+ G IY G Y
Sbjct: 180 VDHGCAL-----------AHQDALVLAALDAANRSHAPYTQALSGVALETRGGAIYTGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q AL AG + I AA+VE+ DAV+ Q + LL
Sbjct: 229 AENAAFNPSLPPLQGALNLMNLAGER------HTAIRRAAVVERRDAVISQWESCAALLN 282
Query: 282 VISPKCEFNVFHCGCKKSCSRF 303
+ GCK F
Sbjct: 283 DL-----------GCKNVIRHF 293
>gi|197335576|ref|YP_002156297.1| cytidine deaminase [Vibrio fischeri MJ11]
gi|226701694|sp|B5FEN2.1|CDD_VIBFM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|197317066|gb|ACH66513.1| cytidine deaminase [Vibrio fischeri MJ11]
Length = 297
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 127/233 (54%), Gaps = 18/233 (7%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI + +S+ S L+ +L L+ A + PIS F+VGA+ G +G ++ G N+E
Sbjct: 34 VISKEQFQSLQADSELSDKELRLALLPLAAAFSVAPISNFYVGAIARGLTGNLYFGANME 93
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
+ + L Q+IHAEQ I++ + E + + ++ +PCGHCRQF+ EL + + +
Sbjct: 94 YNDVQLGQTIHAEQSAISHAWIQGETGISDITINFSPCGHCRQFMNELTTADSLMVQLP- 152
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + G+ L + ET++P R
Sbjct: 153 ----ERNEKSLQEYLPESFGPKDL----------GIEGGLLAPLSHNLALETDSPLLR-- 196
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
ALEAAN+SHAPYS SG+A+ G +Y G Y E+AA+NPSL P+Q ALV
Sbjct: 197 -KALEAANRSHAPYSHNLSGIALEMESGEVYYGMYAENAAFNPSLPPLQVALV 248
>gi|117921014|ref|YP_870206.1| cytidine deaminase [Shewanella sp. ANA-3]
gi|167008664|sp|A0KYD1.1|CDD_SHESA RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|117613346|gb|ABK48800.1| cytidine deaminase [Shewanella sp. ANA-3]
Length = 296
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 24/234 (10%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + Q S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAQQLAELVQSSKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL I I + S
Sbjct: 92 LGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVEGGQIKIHLPSQ 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETE---NPKER 184
+S H LS+ LP FGP D L+ PLL++ ETE + +
Sbjct: 152 DS-----HLLSYYLPYAFGPKD-LNVQSPLLVKQ---------------ETEFALDSSDP 190
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ AL+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 191 MVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|126173925|ref|YP_001050074.1| cytidine deaminase [Shewanella baltica OS155]
gi|153000206|ref|YP_001365887.1| cytidine deaminase [Shewanella baltica OS185]
gi|160874833|ref|YP_001554149.1| cytidine deaminase [Shewanella baltica OS195]
gi|217973825|ref|YP_002358576.1| cytidine deaminase [Shewanella baltica OS223]
gi|378708083|ref|YP_005272977.1| Cytidine deaminase [Shewanella baltica OS678]
gi|386340685|ref|YP_006037051.1| Cytidine deaminase [Shewanella baltica OS117]
gi|418026135|ref|ZP_12665108.1| Cytidine deaminase [Shewanella baltica OS625]
gi|167008660|sp|A3D392.1|CDD_SHEB5 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167008661|sp|A6WLY5.1|CDD_SHEB8 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|189081902|sp|A9KXF0.1|CDD_SHEB9 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|254813807|sp|B8EF35.1|CDD_SHEB2 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|125997130|gb|ABN61205.1| cytidine deaminase [Shewanella baltica OS155]
gi|151364824|gb|ABS07824.1| Cytidine deaminase [Shewanella baltica OS185]
gi|160860355|gb|ABX48889.1| Cytidine deaminase [Shewanella baltica OS195]
gi|217498960|gb|ACK47153.1| Cytidine deaminase [Shewanella baltica OS223]
gi|315267072|gb|ADT93925.1| Cytidine deaminase [Shewanella baltica OS678]
gi|334863086|gb|AEH13557.1| Cytidine deaminase [Shewanella baltica OS117]
gi|353534568|gb|EHC04137.1| Cytidine deaminase [Shewanella baltica OS625]
Length = 296
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 135/231 (58%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
++A + ++ S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 LDAQQLATLTSASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL S I+I + +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDIIVNASPCGHCRQFMNELVEGSKISIHLPA- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
++ HPL++ LP FGP D L+ PL+ + Q + + + I E
Sbjct: 151 ----QESHPLAYYLPYAFGPKD-LNVTSPLMAK-QQTEFALDSADPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -GLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|213613173|ref|ZP_03370999.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 219
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 56 SGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELR 115
SG + G N+EF G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL
Sbjct: 6 SGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELN 65
Query: 116 NTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQI 175
+ D+ I + R H L LPD FGP DL K LL++ +G +
Sbjct: 66 SGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------ 112
Query: 176 PETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQ 235
L AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q
Sbjct: 113 ------GNTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQ 166
Query: 236 AALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
AL L+ G Y I A L EK DA + Q A L+ +
Sbjct: 167 GAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAATLKAL 208
>gi|372274968|ref|ZP_09511004.1| cytidine deaminase [Pantoea sp. SL1_M5]
Length = 261
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 137/249 (55%), Gaps = 21/249 (8%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F V+ A + S+ Q++ + L L+ A A +S F+VGA+ G SG
Sbjct: 24 LDDPGFQAVLSADQVASLQQQTQMDADALALALLPLAAACAVATVSHFNVGAIARGVSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF G PL Q++HAEQ IT+ L E +L+ + V+ PCGHCRQF+ EL + +
Sbjct: 84 WYFGANMEFTGTPLQQTVHAEQSAITHAWLRGESQLETITVNYTPCGHCRQFMNELNSGT 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+I I + +R L+ LPD FGP DL D+ L ++ +G + E
Sbjct: 144 NIRISLP-----QRAVSTLADYLPDAFGPRDL---DITTFLMD-------SVDHGYVAE- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA+ AAN SHAPYS+ +GVA++ G I G Y E+AA+NPS P+QAAL
Sbjct: 188 ---GDELVQAAVAAANASHAPYSQSHAGVALLTATGTIVTGRYAENAAFNPSFPPLQAAL 244
Query: 239 VAYLAAGGS 247
V GG
Sbjct: 245 VLLNMQGGD 253
>gi|219871644|ref|YP_002476019.1| cytidine deaminase [Haemophilus parasuis SH0165]
gi|219691848|gb|ACL33071.1| cytidine deaminase [Haemophilus parasuis SH0165]
Length = 297
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 22/230 (9%)
Query: 10 AAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPG 69
A + + Q L+ ++L + A AR P+S F VGAV +G SG + G N EF
Sbjct: 41 AEQVTTFCQTFNLSPVELALECLPIAACYARVPVSHFFVGAVAIGKSGNFYFGANQEFES 100
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
+ Q++HAEQ +++ + E L + V+ PCGHCRQF+ EL + + I + +
Sbjct: 101 DAMQQTVHAEQSAVSHAWIAGETALTDMVVNYTPCGHCRQFMNELNSAKQLKIHLPHSQN 160
Query: 130 NERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYA 188
N L LPD FGP DL +DK +L + QN E + L+ A
Sbjct: 161 N-----LLHSYLPDAFGPKDLQIDK---VLFDPQQNSF------------EASGDALQQA 200
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
A+ AAN ++APYSK SGVA + C I G Y E+AA+NPS P+Q+AL
Sbjct: 201 AISAANLAYAPYSKAVSGVA-LQCGEQIITGRYAENAAFNPSFLPLQSAL 249
>gi|117618483|ref|YP_856425.1| cytidine deaminase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|167006528|sp|A0KJH4.1|CDD_AERHH RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|117559890|gb|ABK36838.1| cytidine deaminase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 293
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 124/242 (51%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 66 PISKFFVGAIACGLSGNWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 125
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + L LP FGP DL D+ L +
Sbjct: 126 TPCGHCRQFMNELSTAKILKVSLPD------DLSALQSFLPHSFGPADL---DITDALMS 176
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q L +++P L AAL AA +S+APYS+ + VA+ +G I+ G Y
Sbjct: 177 PQAHDELTLV------SDDP---LWQAALAAARQSYAPYSQGYAAVALQFADGRIFCGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + GG I A L+E +D + Q+ +AR L+
Sbjct: 228 AENAAFNPSLPPMQ------MACAHAVLGGEDLATIRRAVLLESKDGQISQQDSARATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|260598608|ref|YP_003211179.1| cytidine deaminase [Cronobacter turicensis z3032]
gi|260217785|emb|CBA32238.1| Cytidine deaminase [Cronobacter turicensis z3032]
Length = 294
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGAV G SG ++ G N+E
Sbjct: 32 MLNAEQVADIRRQSGLDDDALAFALLPLAAACAQTEISHFNVGAVARGLSGSLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL + + I +
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNELNSGLTLRINLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL K L+ +T +G + + L
Sbjct: 152 -----RAPSQLGDYLPDAFGPRDLDIK--TLIFDTENHGYAIE------------GDALA 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN+SHAPYS+ PSG+AI + ++ GSY E+AA+NPSL P+QAAL L+ G
Sbjct: 193 QAAIAAANRSHAPYSQSPSGLAIETRDSAVFTGSYAENAAFNPSLPPLQAAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ I AL E +A + Q A L +
Sbjct: 252 Y-----AWADIKRVALAELNEATIVQRDATAATLNAL 283
>gi|423206535|ref|ZP_17193091.1| cytidine deaminase [Aeromonas veronii AMC34]
gi|404622087|gb|EKB18952.1| cytidine deaminase [Aeromonas veronii AMC34]
Length = 294
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF+VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 67 PISKFYVGAIACGLSGSWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + L LP FGP DL D+ L +
Sbjct: 127 TPCGHCRQFMNELSTAKILKVSLPD------DLSALQSFLPHSFGPADL---DITDALMS 177
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q+ L ++E+P L AAL AA +S+APYS+ + VA+ +G I+ G Y
Sbjct: 178 PQDHAELEL------QSEDP---LWQAALAAARQSYAPYSQGYAAVALQFADGRIFSGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + G I A L+E ++ + Q +A+ L+
Sbjct: 229 AENAAFNPSLPPMQ------MACAHAVLNGEDLATIRRAVLLENKNGQISQRDSAQSTLK 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|334704667|ref|ZP_08520533.1| cytidine deaminase [Aeromonas caviae Ae398]
Length = 293
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS+F VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 66 PISRFFVGAIACGLSGTWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 125
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + S L LP FGP DL D + +
Sbjct: 126 TPCGHCRQFMNELSTAKTLKVSLPDDLSE------LQSFLPHSFGPADLEITDALMSPQA 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H + E+++P L AAL AA +S+APYS+ + VA+ +G I+ G Y
Sbjct: 180 HDE---------LVLESDDP---LWQAALAAARQSYAPYSQGYAAVALQFEDGRIFCGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + GG + A L+E +D + Q +A+ L+
Sbjct: 228 AENAAFNPSLPPMQ------MACAHAVLGGEDLATVRRAVLLESKDGQISQRDSAQSTLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|330829792|ref|YP_004392744.1| Cytidine deaminase [Aeromonas veronii B565]
gi|406676974|ref|ZP_11084159.1| cytidine deaminase [Aeromonas veronii AMC35]
gi|423199946|ref|ZP_17186526.1| cytidine deaminase [Aeromonas veronii AER39]
gi|423209510|ref|ZP_17196064.1| cytidine deaminase [Aeromonas veronii AER397]
gi|328804928|gb|AEB50127.1| Cytidine deaminase [Aeromonas veronii B565]
gi|404617368|gb|EKB14304.1| cytidine deaminase [Aeromonas veronii AER397]
gi|404621171|gb|EKB18061.1| cytidine deaminase [Aeromonas veronii AER39]
gi|404625288|gb|EKB22105.1| cytidine deaminase [Aeromonas veronii AMC35]
Length = 294
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF+VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 67 PISKFYVGAIACGLSGTWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + L LP FGP DL D+ L +
Sbjct: 127 TPCGHCRQFMNELSTAKILKVSLPD------DLSALQSFLPHSFGPADL---DITDALMS 177
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q+ L ++E+P L AAL AA +S+APYS+ + VA+ +G I+ G Y
Sbjct: 178 PQDHAELEL------QSEDP---LWQAALAAARQSYAPYSQGYAAVALQFADGRIFSGRY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + G I A L+E ++ + Q +A+ L+
Sbjct: 229 AENAAFNPSLPPMQ------MACAHAVLNGEDLATIRRAVLLENKNGQISQRDSAQSTLK 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>gi|304397470|ref|ZP_07379348.1| cytidine deaminase [Pantoea sp. aB]
gi|440758267|ref|ZP_20937437.1| Cytidine deaminase [Pantoea agglomerans 299R]
gi|304355088|gb|EFM19457.1| cytidine deaminase [Pantoea sp. aB]
gi|436427876|gb|ELP25543.1| Cytidine deaminase [Pantoea agglomerans 299R]
Length = 296
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
V+ A + S+ Q++ + L L+ A + A +S F+VGA+ G SG + G N+E
Sbjct: 32 VLSADQVASLQQQTQMDADALALALLPLAASCAVATVSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ IT+ L E +L+ + V+ PCGHCRQF+ EL + + I I +
Sbjct: 92 FVGTAMQQTVHAEQSAITHAWLRGERQLETITVNYTPCGHCRQFMNELNSGTSIRISLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+R L+ LPD FGP D LD L+ E ++ + L
Sbjct: 151 ----KRAISTLADYLPDAFGPRD-LDITTFLMDEVDHGYVAVG-------------DELV 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AAN SHAPYS+ +GVA++ +G I G Y E+AA+NPS P+QAALV
Sbjct: 193 QAAVAAANASHAPYSQSHAGVALLTQDGAIVAGRYAENAAFNPSFPPLQAALVLL----- 247
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
GG +I A L E E+A + Q A + L+
Sbjct: 248 -NMQGGDVHQIKKAVLAEVENATLSQFAATQATLETF 283
>gi|120599335|ref|YP_963909.1| cytidine deaminase [Shewanella sp. W3-18-1]
gi|146292668|ref|YP_001183092.1| cytidine deaminase [Shewanella putrefaciens CN-32]
gi|386313347|ref|YP_006009512.1| Cytidine deaminase [Shewanella putrefaciens 200]
gi|167008663|sp|A4Y5R0.1|CDD_SHEPC RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|167008665|sp|A1RL10.1|CDD_SHESW RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|120559428|gb|ABM25355.1| cytidine deaminase [Shewanella sp. W3-18-1]
gi|145564358|gb|ABP75293.1| cytidine deaminase [Shewanella putrefaciens CN-32]
gi|319425972|gb|ADV54046.1| Cytidine deaminase [Shewanella putrefaciens 200]
Length = 296
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 131/231 (56%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + S +T ++L L+ A LA+PPIS+F+VGA+ G SG I++G N+E
Sbjct: 32 IDAMQLAKLTLASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E ++ + V+A+PCGHCRQF+ EL + ++I I + +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGESQIVDIIVNASPCGHCRQFMNELVDGANITIHLPA- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
++ H L++ LP FGP DL V LL Q + + I E
Sbjct: 151 ----QESHSLAYYLPYAFGPKDL--NVVSPLLAKQQTEFVLDSSDPMIIE---------- 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
L+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 195 -GLDHAGLSYAPYTQSFAAVVLETHDGATYCGRYAENAAFNPSMLPMQMAL 244
>gi|145299361|ref|YP_001142202.1| cytidine deaminase [Aeromonas salmonicida subsp. salmonicida A449]
gi|418357271|ref|ZP_12959971.1| cytidine deaminase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|167006529|sp|A4SNI2.1|CDD_AERS4 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|142852133|gb|ABO90454.1| cytidine deaminase [Aeromonas salmonicida subsp. salmonicida A449]
gi|356689529|gb|EHI54067.1| cytidine deaminase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 293
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PISKF VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 66 PISKFFVGAIACGLSGTWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 125
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + L LP FGP DL D + +
Sbjct: 126 TPCGHCRQFMNELSTAKTLQVSLPD------DLSALQSFLPHSFGPADLDITDALMSPQA 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H + + E+E+P R AAL AA +S+APYS+ + VA++ +G ++ G Y
Sbjct: 180 H---------DELVLESEDPIWR---AALAAARQSYAPYSQGYAAVALLFADGRLFCGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q A + G I A L+E ++ + Q +A+ L+
Sbjct: 228 AENAAFNPSLPPMQMACAHAVLCGED------LASIRRAVLLESKNGQISQRDSAQSTLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|119775109|ref|YP_927849.1| cytidine deaminase [Shewanella amazonensis SB2B]
gi|167008659|sp|A1S723.1|CDD_SHEAM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|119767609|gb|ABM00180.1| cytidine deaminase [Shewanella amazonensis SB2B]
Length = 296
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 117/203 (57%), Gaps = 18/203 (8%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
+PP+S F+VGA+ +GS G ++G N+E G L S+HAEQ I++ L+ E ++ + V
Sbjct: 64 KPPVSNFYVGAIAVGSGGDFYMGANLELQGEALFHSVHAEQSAISHAWLSGETQISDIIV 123
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+A+PCGHCRQF+ EL I I + ++ PLSH LP FGP D L+ PLL
Sbjct: 124 NASPCGHCRQFMNELVQGQAIRIHLPGQDTA-----PLSHYLPYAFGPAD-LNVTAPLLS 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ + E+++P L AL+ A S+APYS+C + V + +G + G
Sbjct: 178 KQQTE---------LVLESDDP---LLIEALDHAGLSYAPYSQCHAAVVLETEDGASFCG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYL 242
Y E+AA+NPS+ P+Q AL A +
Sbjct: 226 RYAENAAFNPSMLPMQMALSALV 248
>gi|91793640|ref|YP_563291.1| cytidine deaminase [Shewanella denitrificans OS217]
gi|91715642|gb|ABE55568.1| cytidine deaminase [Shewanella denitrificans OS217]
Length = 297
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 18/231 (7%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A + + + SGL LL L+ A +LA P IS+F+VGA+ GSSG I++G N+E
Sbjct: 32 IDAHQVAELKKASGLAEADLLLALLPIAASLANPSISEFYVGAIAKGSSGDIYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
P L S+HAEQ I++ L+ E ++ + V+ +PCGHCRQF+ EL S + I +
Sbjct: 92 PNEALFHSVHAEQSAISHAWLSGETKIVDIVVNFSPCGHCRQFMNELVEGSLVRIHLP-- 149
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
+++ PLSH LP FGP+D L+ PL L ++ N + +
Sbjct: 150 ---QQEIKPLSHYLPYAFGPSD-LNVTTPL------------LSKSEVELALNSDDPMII 193
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AL+ A S+APY++ + V + +G Y G Y E+AA+NPS+ P+Q AL
Sbjct: 194 EALDQAGLSYAPYTQSYAAVVLETKDGKTYCGRYAENAAFNPSMLPMQMAL 244
>gi|127512539|ref|YP_001093736.1| cytidine deaminase [Shewanella loihica PV-4]
gi|167008662|sp|A3QDC9.1|CDD_SHELP RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|126637834|gb|ABO23477.1| cytidine deaminase [Shewanella loihica PV-4]
Length = 296
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 18/201 (8%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
+PPIS+F+VGA+ G+SG I++G N+E G L S+HAEQ I++ L+ E ++ + V
Sbjct: 64 KPPISEFYVGAIAKGASGDIYMGANLELDGEALFHSVHAEQSAISHAWLSGETGIEDIIV 123
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+A+PCGHCRQF+ EL I I + E+ PLSH LP FGP DL K PLL
Sbjct: 124 NASPCGHCRQFMNELVEGQAIRIHLP-----EQATQPLSHYLPYAFGPADLNIK-TPLLS 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ F L E+ +P + AL+ + S+APYS+ + V + +G + G
Sbjct: 178 KQQHE---FTL------ESADP---MIIEALDHLSLSYAPYSESYAAVVLETRDGATFCG 225
Query: 220 SYMESAAYNPSLGPVQAALVA 240
Y E+AA+NPS+ P+Q AL A
Sbjct: 226 RYAENAAFNPSMLPMQMALSA 246
>gi|259908018|ref|YP_002648374.1| cytidine deaminase [Erwinia pyrifoliae Ep1/96]
gi|387870828|ref|YP_005802200.1| cytidine/deoxycytidine deaminase [Erwinia pyrifoliae DSM 12163]
gi|224963640|emb|CAX55137.1| Cytidine deaminase [Erwinia pyrifoliae Ep1/96]
gi|283477913|emb|CAY73829.1| cytidine/deoxycytidine deaminase [Erwinia pyrifoliae DSM 12163]
Length = 297
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 127/240 (52%), Gaps = 25/240 (10%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAP 103
S F+VGA+ G SG ++ G N+EF G + Q++HAEQ +T+ L E L + V+ P
Sbjct: 69 SDFNVGAIARGKSGTLYFGANMEFVGATMQQTVHAEQSAVTHAWLRGESALISITVNYTP 128
Query: 104 CGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ 163
CGHCRQF+ EL + +D+ I + R L H LPD FGP DL LL++
Sbjct: 129 CGHCRQFMNELNSGTDLTIELPG-----RAAATLGHYLPDSFGPRDLAIST--LLMDDVD 181
Query: 164 NGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYME 223
+G++ P + L+ AAL AAN+SHAPY+ SGVA+ I+ G Y E
Sbjct: 182 HGVA--------PW----GDVLQQAALAAANRSHAPYTGSWSGVALQTASDAIFAGRYAE 229
Query: 224 SAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+AA+NPSL P+Q AL AG + I A L E DA + Q+ A+ L +
Sbjct: 230 NAAFNPSLPPLQGALNLLNLAGEN------LSDIRRAVLAEAPDAKLSQQSASAATLTAL 283
>gi|343519667|ref|ZP_08756646.1| cytidine deaminase [Haemophilus pittmaniae HK 85]
gi|343392514|gb|EGV05080.1| cytidine deaminase [Haemophilus pittmaniae HK 85]
Length = 292
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 113/209 (54%), Gaps = 19/209 (9%)
Query: 37 TLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQH 96
+ A IS F VGAV +G SG +LG N EF + Q+IHAEQ +++ L E ++
Sbjct: 61 SFAHTAISHFKVGAVAIGRSGNFYLGANQEFAHAAIAQTIHAEQSALSHAWLRNERQVTD 120
Query: 97 LAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP 156
+ V+ PCGHCRQF+ EL D+ I + N L LPD FGP D L+
Sbjct: 121 IVVNYTPCGHCRQFMNELTQAEDLRIHLPHQRDN-----ALHDYLPDAFGPKD-LNVTAG 174
Query: 157 LLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNI 216
LL E HQ G+ + + I + A+ AA+ +H PYS+ P G+A+ +G I
Sbjct: 175 LLSEEHQ-GLQTDSNDAVICQ-----------AVAAADLAHTPYSQSPHGIALAFADGRI 222
Query: 217 YKGSYMESAAYNPSLGPVQAAL-VAYLAA 244
G Y E+AA+NPSL +Q+AL AYL A
Sbjct: 223 VTGRYAENAAFNPSLPALQSALNFAYLNA 251
>gi|52425890|ref|YP_089027.1| cytidine deaminase [Mannheimia succiniciproducens MBEL55E]
gi|81609425|sp|Q65RG8.1|CDD_MANSM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|52307942|gb|AAU38442.1| Cdd protein [Mannheimia succiniciproducens MBEL55E]
Length = 296
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 19/232 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
V+E A + ++ L+ ++ + A A PIS+F+VGA+ +G SG + G N E
Sbjct: 36 VLEQATVQQFCRQFALSPVEFALRCLPVAACYALTPISQFNVGAIAIGQSGSFYFGANQE 95
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F + Q++HAEQ I++ L E + H+ V+ PCGHCRQF+ EL + + I +
Sbjct: 96 FVAASMQQTVHAEQSAISHAWLAGEKAIAHMVVNYTPCGHCRQFMNELNSAERLKIHLPH 155
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
+N L + LPD FGP DL ++V ++H P + L
Sbjct: 156 SQNN-----LLHNYLPDAFGPKDLNIQNVFFDGQSH-------------PFNYQGHDPLI 197
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AA+EAA++S+APYS+ SGVA+ E I G Y E+AA+NP+ P+Q+AL
Sbjct: 198 RAAVEAASQSYAPYSQAFSGVALQLGEL-IICGRYAENAAFNPTFLPLQSAL 248
>gi|385788799|ref|YP_005819908.1| cytidine deaminase [Erwinia sp. Ejp617]
gi|310768071|gb|ADP13021.1| cytidine deaminase [Erwinia sp. Ejp617]
Length = 297
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 127/240 (52%), Gaps = 25/240 (10%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAP 103
S F+VGA+ G SG ++ G N+EF G + Q++HAEQ +T+ L E L + V+ P
Sbjct: 69 SDFNVGAIARGKSGTLYFGANMEFVGATMQQTVHAEQSAVTHAWLRGESALISITVNYTP 128
Query: 104 CGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ 163
CGHCRQF+ EL + +D+ I + R L H LPD FGP DL LL++
Sbjct: 129 CGHCRQFMNELNSGTDLTIELPG-----RAAATLGHYLPDSFGPRDLAIST--LLMDDVN 181
Query: 164 NGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYME 223
+G++ P + L+ AAL AAN+SHAPY+ SGVA+ I+ G Y E
Sbjct: 182 HGVA--------PW----GDVLQQAALAAANRSHAPYTGSWSGVALQTASDAIFAGRYAE 229
Query: 224 SAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+AA+NPSL P+Q AL AG + I A L E DA + Q+ A+ L +
Sbjct: 230 NAAFNPSLPPLQGALNLLNLAGEN------LSDIRRAVLAEAPDAKLSQQSASAATLTAL 283
>gi|170726401|ref|YP_001760427.1| cytidine deaminase [Shewanella woodyi ATCC 51908]
gi|226701692|sp|B1KRC5.1|CDD_SHEWM RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|169811748|gb|ACA86332.1| Cytidine deaminase [Shewanella woodyi ATCC 51908]
Length = 296
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 18/199 (9%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
+PPIS+F+VGA+ G SG I++G N+E G L S+HAEQ I++ L+ E ++ + V
Sbjct: 64 KPPISEFYVGAIAKGKSGDIYMGANLELSGEALFHSVHAEQSAISHAWLSGETQILDVVV 123
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ +PCGHCRQF+ E+ + I + E+K PL+H LP FGP++L LL
Sbjct: 124 NFSPCGHCRQFMNEMVEGQKVVIHLP-----EQKAQPLAHYLPYAFGPSNL--NITEPLL 176
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
Q+ +S + + I E AL+ A+ S+APYS + V + +G Y G
Sbjct: 177 SKQQHELSLDSSDPMIIE-----------ALDHASLSYAPYSNSYAAVVLETKDGATYCG 225
Query: 220 SYMESAAYNPSLGPVQAAL 238
Y E+AA+NPS+ P+Q AL
Sbjct: 226 RYAENAAFNPSMLPMQMAL 244
>gi|421499308|ref|ZP_15946358.1| cytidine deaminase [Aeromonas media WS]
gi|407181663|gb|EKE55670.1| cytidine deaminase [Aeromonas media WS]
Length = 293
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS+F VGA+ G SG + G N+EF G L S+HAEQ I+N L E + + V+
Sbjct: 66 PISRFFVGAIACGLSGSWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVNY 125
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + + S L LP FGP DL D+ L +
Sbjct: 126 TPCGHCRQFMNELSTAKTLKVSLPDDLSE------LQSFLPHSFGPADL---DITDALMS 176
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
Q L E+++P L AAL AA +S+APYS+ + VA+ +G I+ G Y
Sbjct: 177 PQAHDELKL------ESDDP---LWQAALAAARQSYAPYSQGYAAVALQFEDGRIFCGRY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPSL P+Q +A + GG + A L+E + + Q +A+ L+
Sbjct: 228 AENAAFNPSLPPMQ------MACAHAVLGGEELASVRRAVLLESKSGQISQRDSAQSTLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>gi|300122343|emb|CBK22915.2| unnamed protein product [Blastocystis hominis]
Length = 311
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 133/254 (52%), Gaps = 26/254 (10%)
Query: 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGN 64
RF+ E E+ + + ++V +LL L+++ + AR PIS+F VGA SGRIFLG N
Sbjct: 8 RFMYSKEEVEAFLEANQVSVEELLQFLIEAIKPKARVPISQFRVGAAAYTESGRIFLGTN 67
Query: 65 VEFPGLPLHQSIHAEQFLITNLILNA----EPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+EF + ++Q++HAEQ ++N+ L+ +++ LAVS PCGHCRQ LQEL + +I
Sbjct: 68 MEFQNVAMNQTVHAEQCTLSNVYLHTAFGQNEKIRILAVSEVPCGHCRQILQELPDAKNI 127
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET---------------HQNG 165
+ + + H LS LLP F +D V L ET H
Sbjct: 128 RVIVQKAGVD----HLLSDLLPYSFELP--IDGIVHHLFETASLFPLDQFETPCQSHLRR 181
Query: 166 MSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESA 225
+ + I TE+ R++ L+ +S A YS S I+ G+ + G +ES+
Sbjct: 182 IRSEIEQHAISLTEDRWNRIESRLLDLLRRSFAWYSGHASSAVILSKTGDAFGGC-VESS 240
Query: 226 AYNPSLGPVQAALV 239
AYNP++ P+Q AL+
Sbjct: 241 AYNPTINPLQMALI 254
>gi|407691615|ref|YP_006816404.1| cytidine deaminase [Actinobacillus suis H91-0380]
gi|407387672|gb|AFU18165.1| cytidine deaminase [Actinobacillus suis H91-0380]
Length = 297
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 20/197 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P+SKF+VGA+ +G SG + G N EF + + Q++HAEQ +++ L E + + V+
Sbjct: 73 PVSKFYVGAIAIGESGNFYFGANQEFSSISMQQTVHAEQSAVSHAWLAGEKSIHDMVVNY 132
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I + +N L + LPD FGP DL + V +
Sbjct: 133 TPCGHCRQFMNELNSAKTLKIHLPHSQNN-----LLQNYLPDSFGPKDLNIEQVLFDAQH 187
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H +F L + L AA+ AA +S+APYS+ SG+A + + I G Y
Sbjct: 188 H----TFELVG----------DPLSQAAIIAAQQSYAPYSQAMSGIA-LQVDEQIITGRY 232
Query: 222 MESAAYNPSLGPVQAAL 238
E+AA+NPS P+Q+AL
Sbjct: 233 AENAAFNPSFLPLQSAL 249
>gi|307257410|ref|ZP_07539179.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306864062|gb|EFM95976.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 297
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGAV +G SGR + G N EF + Q++HAEQ I++ L E + + V+
Sbjct: 73 PISNFYVGAVAIGESGRFYFGANQEFNAQAIQQTVHAEQSAISHAWLAGETAITDMVVNY 132
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I + +N L LPD FGP DL + V +T
Sbjct: 133 TPCGHCRQFMNELNSAKTLKIHLPHSQNN-----LLRQYLPDSFGPKDLNIEKVLFDQQT 187
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H + +L L AA++ A +S+APYSK SG+A+ E I G Y
Sbjct: 188 HSLPLRGDL--------------LTQAAIQTAAQSYAPYSKSLSGIALQVGE-QIICGRY 232
Query: 222 MESAAYNPSLGPVQAAL 238
E+AA+NPS P+Q+AL
Sbjct: 233 AENAAFNPSFLPLQSAL 249
>gi|32034191|ref|ZP_00134413.1| COG0295: Cytidine deaminase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208807|ref|YP_001054032.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|165976768|ref|YP_001652361.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|190150664|ref|YP_001969189.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|303250571|ref|ZP_07336768.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|303253505|ref|ZP_07339644.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307246263|ref|ZP_07528344.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307248376|ref|ZP_07530399.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307252984|ref|ZP_07534871.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307255247|ref|ZP_07537062.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259682|ref|ZP_07541405.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|307264012|ref|ZP_07545612.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|171855095|sp|A3N1Z1.1|CDD_ACTP2 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701670|sp|B3GYC3.1|CDD_ACTP7 RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|226701671|sp|B0BQT2.1|CDD_ACTPJ RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|126097599|gb|ABN74427.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|165876869|gb|ABY69917.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189915795|gb|ACE62047.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|302647615|gb|EFL77832.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302650559|gb|EFL80718.1| cytidine deaminase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306852872|gb|EFM85096.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306855114|gb|EFM87294.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306859513|gb|EFM91539.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306861796|gb|EFM93775.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866222|gb|EFM98087.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306870623|gb|EFN02367.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 297
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGAV +G SGR + G N EF + Q++HAEQ I++ L E + + V+
Sbjct: 73 PISNFYVGAVAIGESGRFYFGANQEFNAQAIQQTVHAEQSAISHAWLAGETAITDMVVNY 132
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I + +N L LPD FGP DL + V +T
Sbjct: 133 TPCGHCRQFMNELNSAKTLKIHLPHSQNN-----LLRQYLPDSFGPKDLNIEKVLFDQQT 187
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H + +L L AA++ A +S+APYSK SG+A+ E I G Y
Sbjct: 188 HSLPLRGDL--------------LTQAAIQTAAQSYAPYSKSLSGIALQVGE-QIICGRY 232
Query: 222 MESAAYNPSLGPVQAAL 238
E+AA+NPS P+Q+AL
Sbjct: 233 AENAAFNPSFLPLQSAL 249
>gi|416085460|ref|ZP_11587188.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. I23C]
gi|348010205|gb|EGY50276.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
b str. I23C]
Length = 221
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 123/243 (50%), Gaps = 26/243 (10%)
Query: 48 VGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHC 107
+GAV G G + G N EF + Q+IHAEQ I++ + E +L + V+ PCGHC
Sbjct: 1 MGAVVHGIGGDFYFGANQEFCQTDIQQTIHAEQSAISHAWMRGEKQLTDVTVNYTPCGHC 60
Query: 108 RQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPL-LLETHQNGM 166
RQF+ EL + + I + +N L LPD FGP DL ++ L LL+ H N +
Sbjct: 61 RQFMNELNSAETLQIHLPHSQNN-----LLHQYLPDAFGPKDL---NIQLSLLDQHDNQL 112
Query: 167 SFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
S N +NP L AL AN++HAPYS G+AI IY GSY E+AA
Sbjct: 113 SLN--------NDNP---LVLQALAMANQAHAPYSNSFHGIAIQTRNQQIYHGSYAENAA 161
Query: 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
+NPSL +Q AL + +G E IV +VEK + + + A LL + K
Sbjct: 162 FNPSLPAMQVALNHLILSGEE------VENIVRVVMVEKSNTLHYKAMAEELLGTLSDVK 215
Query: 287 CEF 289
++
Sbjct: 216 LDY 218
>gi|307250603|ref|ZP_07532544.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|307261830|ref|ZP_07543494.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306857344|gb|EFM89459.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306868447|gb|EFN00260.1| Cytidine deaminase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 297
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGAV +G SGR + G N EF + Q++HAEQ +++ L E + + V+
Sbjct: 73 PISNFYVGAVAIGESGRFYFGANQEFNAQAIQQTVHAEQSAVSHAWLAGETAITDMVVNY 132
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I + +N L LPD FGP DL + V +T
Sbjct: 133 TPCGHCRQFMNELNSAKTLKIHLPHSQNN-----LLRQYLPDSFGPKDLNIEKVLFDQQT 187
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
H + +L L AA++ A +S+APYSK SG+A+ E I G Y
Sbjct: 188 HSLPLRGDL--------------LTQAAIQTAAQSYAPYSKSLSGIALQVGE-QIICGRY 232
Query: 222 MESAAYNPSLGPVQAAL 238
E+AA+NPS P+Q+AL
Sbjct: 233 AENAAFNPSFLPLQSAL 249
>gi|294055341|ref|YP_003548999.1| zinc-binding CMP/dCMP deaminase protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614674|gb|ADE54829.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
akajimensis DSM 45221]
Length = 292
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 108/207 (52%), Gaps = 18/207 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L L L+ AQT + PP+S F VGAV +GSSG ++LG N+EF G+PL S+HAEQ +
Sbjct: 44 LTLAKELLDLAQTFSVPPLSGFRVGAVAIGSSGHLYLGANLEFAGVPLSCSLHAEQSAVL 103
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
N ++ EP ++ L +S PCGHCRQFL EL S + + I + + H L LLP
Sbjct: 104 NAWMHGEPAIEALVISEFPCGHCRQFLWELSGASKLCVHIGN------QSHQLIDLLPHP 157
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FG L + G+ + + L AL AA +S+ PY++
Sbjct: 158 FGTERKLGHGLLDSPSVQHMGI------------QKIESDLAQRALNAAERSYTPYTQAH 205
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSL 231
SG I +G Y G ES A+NPS+
Sbjct: 206 SGFVIECTDGKFYAGRTAESVAFNPSV 232
>gi|322513616|ref|ZP_08066714.1| cytidine deaminase [Actinobacillus ureae ATCC 25976]
gi|322120576|gb|EFX92476.1| cytidine deaminase [Actinobacillus ureae ATCC 25976]
Length = 297
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
A+ + Q+ L+ ++L + A A P+S F+VGA+ +G SG + G N EF
Sbjct: 42 AQIQQWCQQFELSPIELALHCLPLAACYALIPVSNFYVGAIAIGESGNFYFGANQEFSST 101
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN 130
+ Q++HAEQ +++ L E +Q + V+ PCGHCRQF+ EL + + I + +N
Sbjct: 102 SIQQTVHAEQSAVSHAWLAGEKSIQDMVVNYTPCGHCRQFMNELNSAKTLKIHLHHSQNN 161
Query: 131 ERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL 190
L + LPD FGP DL + V L +T + +F L T +P L AA+
Sbjct: 162 -----LLQNYLPDSFGPKDLNIEQV--LFDTQHH--TFEL-------TGDP---LSQAAI 202
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AA +S+APYS SG+A+ E + G Y E+AA+NPS P+Q+AL
Sbjct: 203 IAAQQSYAPYSHAMSGIALKVGE-QVITGRYAENAAFNPSFLPLQSAL 249
>gi|312172907|emb|CBX81163.1| cytidine/deoxycytidine deaminase [Erwinia amylovora ATCC BAA-2158]
Length = 294
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAP 103
S F VGA+ G SG ++ G N+EF G + Q++HAEQ +T+ L E L + V+ P
Sbjct: 69 SGFSVGAIARGESGTLWFGANMEFVGATMQQTVHAEQSAVTHAWLRGENALAGITVNYTP 128
Query: 104 CGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ 163
CGHCRQF+ EL + S + I + R L H LPD FGP DL LL++
Sbjct: 129 CGHCRQFMNELNSGSGLTIELPG-----RAAATLGHYLPDSFGPRDL--AITTLLMDDVD 181
Query: 164 NGMSFNLCNGQIPETENPK-ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G++ P+ + L+ AAL AAN+SHAPY+ SGVA+ G I+ G Y
Sbjct: 182 HGIA-------------PRGDALQQAALSAANRSHAPYTGAWSGVALQTRAGAIFAGRYA 228
Query: 223 ESAAYNPSLGPVQAAL 238
E+AA+NPSL P+Q AL
Sbjct: 229 ENAAFNPSLPPLQGAL 244
>gi|442610190|ref|ZP_21024915.1| Cytidine deaminase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748409|emb|CCQ10977.1| Cytidine deaminase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 287
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 26/242 (10%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGL----GSS 56
++ R ++ A+ + + L V L+ L+ A A PPISKF+VGA+ L +S
Sbjct: 14 IKASRGILGYAQVSILCDELELDVEALMIELLPVAAKFALPPISKFYVGAIALERTSANS 73
Query: 57 GRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
G ++ G N+EF L +HAEQ I N LN ++ +A++ APCGHCRQF+ E+ N
Sbjct: 74 GNLYFGANLEFSDQALGLVVHAEQSAINNAWLNGAKQIDLIAITDAPCGHCRQFMNEMHN 133
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
++I + K L LLP+ FGP DL + + L ++ + +SF++
Sbjct: 134 ADALSINLP------HKRTSLRRLLPEDFGPKDLDNHES--LFQSTKQALSFSMT----- 180
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
+ A E +S+APY+ V + +G + G Y+E+AAYNPSL P+Q+
Sbjct: 181 --------ISDALCETVCRSYAPYTGNYCAVELETNKGR-FVGGYIENAAYNPSLSPLQS 231
Query: 237 AL 238
AL
Sbjct: 232 AL 233
>gi|261495910|ref|ZP_05992332.1| cytidine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261308431|gb|EEY09712.1| cytidine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
Length = 299
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + +K + ++L + A A P+S F+VGAV +G +G + G N EF G +
Sbjct: 44 DELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECMQ 103
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
QS+HAEQ I++ L E + + V+ PCGHCRQF+ EL + + + + + +N
Sbjct: 104 QSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN--- 160
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LPD FGP DL G+ L + Q + E + L+ AA+ AA
Sbjct: 161 --LLHSYLPDSFGPKDL--------------GIEKVLFDEQPQQFEVKGDHLQQAAIFAA 204
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
N ++APYS SGVA+ E I G Y E+AA+NP+ P+Q+AL
Sbjct: 205 NNAYAPYSNAFSGVALQVGE-RIVCGKYTENAAFNPTFLPLQSAL 248
>gi|452744793|ref|ZP_21944634.1| cytidine deaminase [Mannheimia haemolytica serotype 6 str. H23]
gi|452087211|gb|EME03593.1| cytidine deaminase [Mannheimia haemolytica serotype 6 str. H23]
Length = 299
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + +K + ++L + A A P+S F+VGAV +G +G + G N EF G +
Sbjct: 44 DELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECMQ 103
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
QS+HAEQ I++ L E + + V+ PCGHCRQF+ EL + + + + + +N
Sbjct: 104 QSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN--- 160
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LPD FGP DL G+ L + Q + E + L+ AA+ AA
Sbjct: 161 --LLHSYLPDSFGPKDL--------------GIEKVLFDEQPQQFEVKGDHLQQAAIFAA 204
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
N ++APYS SGVA+ E I G Y E+AA+NP+ P+Q+AL
Sbjct: 205 NNAYAPYSNAFSGVALQVGE-RIVCGKYTENAAFNPTFLPLQSAL 248
>gi|261493168|ref|ZP_05989699.1| cytidine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261311171|gb|EEY12343.1| cytidine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 258
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + +K + ++L + A A P+S F+VGAV +G +G + G N EF G +
Sbjct: 3 DELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECMQ 62
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
QS+HAEQ I++ L E + + V+ PCGHCRQF+ EL + + + + + +N
Sbjct: 63 QSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN--- 119
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LPD FGP DL G+ L + Q + E + L+ AA+ AA
Sbjct: 120 --LLHSYLPDSFGPKDL--------------GIEKVLFDEQPQQFEVKGDHLQQAAIFAA 163
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
N ++APYS SGVA+ E I G Y E+AA+NP+ P+Q+AL
Sbjct: 164 NNAYAPYSNAFSGVALQVGE-RIVCGKYTENAAFNPTFLPLQSAL 207
>gi|292488754|ref|YP_003531641.1| cytidine/deoxycytidine deaminase [Erwinia amylovora CFBP1430]
gi|292899907|ref|YP_003539276.1| cytidine deaminase [Erwinia amylovora ATCC 49946]
gi|428785701|ref|ZP_19003190.1| cytidine/deoxycytidine deaminase [Erwinia amylovora ACW56400]
gi|291199755|emb|CBJ46876.1| cytidine deaminase [Erwinia amylovora ATCC 49946]
gi|291554188|emb|CBA21420.1| cytidine/deoxycytidine deaminase [Erwinia amylovora CFBP1430]
gi|426275565|gb|EKV53294.1| cytidine/deoxycytidine deaminase [Erwinia amylovora ACW56400]
Length = 294
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAP 103
S F VGA+ G SG ++ G N+EF G + Q++HAEQ +T+ L E L + V+ P
Sbjct: 69 SGFSVGAIARGESGTLWFGANMEFVGATMQQTVHAEQSAVTHAWLRGENALAGITVNYTP 128
Query: 104 CGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ 163
CGHCRQF+ EL + S + I + R L H LPD FGP DL LL++
Sbjct: 129 CGHCRQFMNELNSGSGLMIELPG-----RAAATLGHYLPDSFGPRDL--AITTLLMDDVD 181
Query: 164 NGMSFNLCNGQIPETENPK-ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYM 222
+G++ P+ + L+ AAL AAN+SHAPY+ SGVA+ G I+ G Y
Sbjct: 182 HGIA-------------PRGDALQQAALSAANRSHAPYTGAWSGVALQTRAGAIFAGRYA 228
Query: 223 ESAAYNPSLGPVQAAL 238
E+AA+NPSL P+Q AL
Sbjct: 229 ENAAFNPSLPPLQGAL 244
>gi|444424288|ref|ZP_21219746.1| cytidine deaminase, partial [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444242283|gb|ELU53797.1| cytidine deaminase, partial [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 239
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 119/212 (56%), Gaps = 18/212 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
+ L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+EF G+ L Q++HAE
Sbjct: 45 TNLSDKELRVALLPFAAAFSYAPISEFYVGAIVRGLSGRLYFGANMEFFGVQLGQTVHAE 104
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I++ + E ++ + ++ +PCGHCRQF+ EL ++ I + ER+ L H
Sbjct: 105 QCAISHAWMKGEHGVKDITINYSPCGHCRQFMNELSTAKELKIQLP-----EREEKSLHH 159
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LP+ FGP D L + L+ E +C + + L A+ A N SHAP
Sbjct: 160 YLPEAFGPAD-LGIESGLMAEVKHEF----VC--------DEDDALIQKAVNAMNISHAP 206
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
Y+ SG+A+ G +++G+Y E+AA+NPSL
Sbjct: 207 YTNNLSGIALEMNSGLVFQGAYAENAAFNPSL 238
>gi|119468658|ref|ZP_01611710.1| cytidine deaminase [Alteromonadales bacterium TW-7]
gi|119447714|gb|EAW28980.1| cytidine deaminase [Alteromonadales bacterium TW-7]
Length = 308
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 129/255 (50%), Gaps = 32/255 (12%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ A E + ++ ++V LL LV A + P+S FHVGA+ L +
Sbjct: 33 LKSQRGILNANNIEQLCKEFNVSVDSLLQGLVPLASEFSVAPVSHFHVGAIVKALDDQQQ 92
Query: 59 I--FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ + G NVEF L +HAEQ I N LN ++ +A+S APCG+CRQF+ EL +
Sbjct: 93 VNFYFGANVEFDHQALSLVVHAEQSAINNAWLNGAKKILKIAISDAPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQ-- 174
+ +I + S ++ L+ LLP FGP DL G F+L N +
Sbjct: 153 AKEFDILLPS------QHFKLAELLPHSFGPTDL--------------GNEFSLFNPKPQ 192
Query: 175 --IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLG 232
+ + E +E AL A + PYS+ S V + + + GSY E+AAY+PSL
Sbjct: 193 FAVFDDEQIEETFAGFALNA----YVPYSQNFSAVKVSTFDNGDFYGSYAENAAYSPSLS 248
Query: 233 PVQAALVAYLAAGGS 247
P+Q+AL + AG S
Sbjct: 249 PLQSALSQFFLAGLS 263
>gi|392534276|ref|ZP_10281413.1| cytidine deaminase [Pseudoalteromonas arctica A 37-1-2]
Length = 308
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAV--GLGSSGRI--FLGGNVEFPGLPLHQSIHAEQFL 82
LL LV A A PIS FHVGA+ L + + + G NVEF L +HAEQ
Sbjct: 59 LLQGLVPLASEYAVAPISDFHVGAIVKALDENDEVNFYFGANVEFDHQALSLVVHAEQSA 118
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLP 142
I N LN ++ +A+S APCG+CRQF+ EL + + +I + ++ L+ LLP
Sbjct: 119 INNAWLNGAKKIVKIAISDAPCGYCRQFMNELADAKEFDILLP------EQHFKLAELLP 172
Query: 143 DRFGPNDLLDKDVPLLLETHQNGMSFNLCN----GQIPETENPKERLKYAALEAANKSHA 198
FGP DL G +F+L N Q+ + E+L AL A +
Sbjct: 173 HSFGPTDL--------------GNAFSLFNPEPHQQVFANDQLDEKLASTALNA----YV 214
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
PYSK S V I E + GSY E+AAY+PSL P+Q+AL AG S
Sbjct: 215 PYSKNFSAVKISTFENGDFYGSYAENAAYSPSLSPLQSALSQLFIAGLS 263
>gi|359441223|ref|ZP_09231124.1| cytidine deaminase [Pseudoalteromonas sp. BSi20429]
gi|358036930|dbj|GAA67373.1| cytidine deaminase [Pseudoalteromonas sp. BSi20429]
Length = 308
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAV--GLGSSGRI--FLGGNVEFPGLPLHQSIHAEQFL 82
LL LV A A PIS FHVGA+ L + + + G NVEF L +HAEQ
Sbjct: 59 LLQGLVPLASEYAVAPISDFHVGAIVKALDENDEVNFYFGANVEFDHQALSLVVHAEQSA 118
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLP 142
I N LN ++ +A+S APCG+CRQF+ EL + + +I + ++ L+ LLP
Sbjct: 119 INNAWLNGAKKIVKIAISDAPCGYCRQFMNELADAKEFDILLP------EQHFKLAELLP 172
Query: 143 DRFGPNDLLDKDVPLLLETHQNGMSFNLCN----GQIPETENPKERLKYAALEAANKSHA 198
FGP DL G +F+L N Q+ + E+L AL A +
Sbjct: 173 HSFGPTDL--------------GNAFSLFNPEPHQQVFANDQLDEKLASTALNA----YV 214
Query: 199 PYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
PYSK S V I E + GSY E+AAY+PSL P+Q+AL AG S
Sbjct: 215 PYSKNFSAVKISTFENGDFYGSYAENAAYSPSLSPLQSALSQLFIAGLS 263
>gi|308049113|ref|YP_003912679.1| cytidine deaminase [Ferrimonas balearica DSM 9799]
gi|307631303|gb|ADN75605.1| cytidine deaminase [Ferrimonas balearica DSM 9799]
Length = 294
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 142/263 (53%), Gaps = 28/263 (10%)
Query: 12 EAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLP 71
+ ++ Q SG+ LL ++ A + ++ P+S F VGA+ G SG ++ G N+E G
Sbjct: 36 DVAALEQASGMKGHDLLLAMLPLAASFSQAPVSHFEVGAIARGISGTLYFGANLELAGEA 95
Query: 72 LHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNE 131
L S+HAEQ I++ L E L + V+A+PCGHCRQF+ EL ++ I + ++
Sbjct: 96 LFHSVHAEQSAISHAWLAGEAGLTEIVVNASPCGHCRQFMNELNGADELIIVLPGQDNGA 155
Query: 132 RKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNL--CNGQIPETENPKERLKYAA 189
L H LP FGP+DL G+ L +GQ + E+ + L AA
Sbjct: 156 -----LHHYLPYAFGPSDL--------------GVEVGLMAASGQALQLES-DDALVNAA 195
Query: 190 LEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGG 249
L AA S+APYS PS VA+ +G ++ G Y E+AA+NPSL P+Q AL A +A
Sbjct: 196 LAAARLSYAPYSHSPSAVALQCQDGQVFVGRYAENAAFNPSLPPMQMAL-ADMARHRV-- 252
Query: 250 GGGGYERIVAAALVEKEDAVVRQ 272
G++RI A LVE +DA + Q
Sbjct: 253 ---GFDRIQRAVLVELDDAQISQ 272
>gi|359298542|ref|ZP_09184381.1| cytidine deaminase [Haemophilus [parainfluenzae] CCUG 13788]
Length = 287
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 22/241 (9%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ A + +++ ++ L+ + + A ++ PIS+F+VGA+ +G SG + G N EF
Sbjct: 32 LSAEQVKTLCEQFQLSQIDFALACLPVAACYSKAPISEFYVGAIAIGESGNFYFGANQEF 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
+ + Q++HAEQ + + E R+ + V+ PCGHCRQF+ EL + + I +
Sbjct: 92 ESVSIGQTVHAEQSALMHAWQMGEKRITDVVVNYTPCGHCRQFMNELNSAPTLRIHLPHS 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
+N L LPD FGP +L D L +G P T+ L
Sbjct: 152 QNNA-----LHSYLPDAFGPRNLNITDC--------------LFDGPTPTTQ--PANLTE 190
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AA+EAA S+APYS S VA+ E I G Y E+AA+NPS+ P+Q AL Y G +
Sbjct: 191 AAIEAARSSYAPYSHLQSAVALQAGE-RIITGRYAENAAFNPSMLPLQNALNFYRLQGET 249
Query: 248 G 248
Sbjct: 250 A 250
>gi|402305989|ref|ZP_10825043.1| putative cytidine deaminase [Haemophilus sputorum HK 2154]
gi|400375611|gb|EJP28507.1| putative cytidine deaminase [Haemophilus sputorum HK 2154]
Length = 287
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 22/241 (9%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ A + +++ ++ L+ + + A ++ PIS F+VGA+ +G SG + G N EF
Sbjct: 32 LSAEQVKTLCEQFQLSQIDFALACLPVAACYSKAPISAFYVGAIAIGESGNFYFGANQEF 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
+ + Q++HAEQ + + E R+ + V+ PCGHCRQF+ EL + + I +
Sbjct: 92 ESVSIGQTVHAEQSALMHAWQMGEKRITDVVVNYTPCGHCRQFMNELNSAPTLRIHLPHS 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
+N L LPD FGP +L D L +G P T+ L
Sbjct: 152 QNNA-----LHSYLPDAFGPRNLNITDC--------------LFDGPTPTTQ--PANLTE 190
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AA+EAA S+APYS S VA+ E I G Y E+AA+NPS+ P+Q AL Y G +
Sbjct: 191 AAIEAARSSYAPYSHLQSAVALQSGE-RIITGRYAENAAFNPSMLPLQNALNFYRLQGET 249
Query: 248 G 248
Sbjct: 250 A 250
>gi|359447767|ref|ZP_09237334.1| cytidine deaminase [Pseudoalteromonas sp. BSi20480]
gi|358046411|dbj|GAA73583.1| cytidine deaminase [Pseudoalteromonas sp. BSi20480]
Length = 308
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ E + ++ ++V LL LV A + P+S FHVGA+ L +
Sbjct: 33 LKSQRGILNTNNIEQLCKEFNVSVDSLLQGLVPLASEFSVAPVSHFHVGAIVKALDDQQQ 92
Query: 59 I--FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ + G NVEF L +HAEQ I N LN ++ +A+S APCG+CRQF+ E+ +
Sbjct: 93 VNFYFGANVEFDHQALSLVVHAEQSAINNAWLNGAKKILKIAISDAPCGYCRQFMNEIAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+ +I + S ++ L+ LLP FGP DL G F+L N +
Sbjct: 153 AKEFDILLPS------QHFKLAELLPHSFGPTDL--------------GNEFSLFNPKPQ 192
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E+++ A A S+ PYS+ S V + + GSY E+AAY+PSL P+Q+
Sbjct: 193 LAVFDDEQIEEAFAGFALNSYVPYSQNFSAVKVSTFNNGDFYGSYAENAAYSPSLSPLQS 252
Query: 237 ALVAYLAAGGS 247
AL + AG S
Sbjct: 253 ALSQFFLAGLS 263
>gi|445260622|ref|ZP_21409764.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|444888652|gb|ELY12193.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 226
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 19/214 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGS 220
AA+ AANKSH PYS PSGVA+ +G I+ GS
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGS 226
>gi|392554861|ref|ZP_10301998.1| cytidine deaminase [Pseudoalteromonas undina NCIMB 2128]
Length = 309
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 129/251 (51%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ +++ +++ + ++ LL LV A + PISKFHVGA+ GL S G
Sbjct: 33 LKTQRGILHSSDIKALCTELNVSEDTLLQGLVPMASEFSVAPISKFHVGAIVKGLNSQGN 92
Query: 59 --IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ G N EF L +H EQ I N LN ++ +A+S APCG+CRQF+ EL +
Sbjct: 93 TTFYFGANAEFDHQALSLVVHGEQSAINNAWLNGAKKVLKIAISDAPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+++I + + N L+ LLP FGP DL ++ L + F
Sbjct: 153 AKELDILLPAQN------FKLAELLPHSFGPTDLGNEHS--LFNPAEQTKCFK------- 197
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
ET+ ++ + YA ++ PYS+ S V I E + GSY E+AAY+PSL P+Q+
Sbjct: 198 ETDLDEKLMSYAL-----AAYVPYSQNYSAVKISTLENGDFYGSYAENAAYSPSLSPLQS 252
Query: 237 ALVAYLAAGGS 247
A+ AG S
Sbjct: 253 AVSQLFVAGLS 263
>gi|167520582|ref|XP_001744630.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776961|gb|EDQ90579.1| predicted protein [Monosiga brevicollis MX1]
Length = 248
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 14/215 (6%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L A +LAR P+S FHVGAV L G IFLG N EF + SIHAEQ I+N+
Sbjct: 1 LQNLTDVAASLARAPVSNFHVGAVMLTDHGHIFLGANQEFDHQAIGMSIHAEQAAISNIA 60
Query: 88 LNAEPRLQ-HLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ + + LAV+AAPCGHCRQF+ E+ N D+ + + +++ ++ +LP F
Sbjct: 61 HHPDAGIPVTLAVNAAPCGHCRQFIVEMHNGIDMRLLLP-----QKEPLRIADVLPHAFL 115
Query: 147 PNDLLDKDVPLL----LETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSK 202
P DL ++ PLL ++ +G L G P T +E A AA K++APYS
Sbjct: 116 PKDLNNQH-PLLVHPTIDLAADGPHEVLHEGS-PGTI--RETALLMASVAARKAYAPYSG 171
Query: 203 CPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
C S VA+ +G + + YME+AA+NPSL Q+A
Sbjct: 172 CHSAVALRLRDGRVLRAWYMENAAFNPSLPAAQSA 206
>gi|332532937|ref|ZP_08408809.1| cytidine deaminase [Pseudoalteromonas haloplanktis ANT/505]
gi|332037603|gb|EGI74055.1| cytidine deaminase [Pseudoalteromonas haloplanktis ANT/505]
Length = 308
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 110/225 (48%), Gaps = 24/225 (10%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAV--GLGSSGRI--FLGGNVEFPGLPLHQSIHAEQFL 82
LL LV A A P+S FHVGA+ L G + + G NVEF L +HAEQ
Sbjct: 59 LLQGLVPLASEYAVAPVSDFHVGAIVKALDEKGEVNFYFGANVEFDHQALSLVVHAEQSA 118
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLP 142
I N LN ++ +A+S APCG+CRQF+ EL + + +I + + L+ LLP
Sbjct: 119 INNAWLNGAKKIVKIAISDAPCGYCRQFMNELADAKEFDILLPD------QQFKLAELLP 172
Query: 143 DRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSK 202
FGP DL G F+L N + + E L A ++ PYS+
Sbjct: 173 HSFGPTDL--------------GNEFSLFNPKPQQGNFSAEDLDETLARFALNAYVPYSQ 218
Query: 203 CPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
S V I + GSY E+AAY+PSL P+Q+AL + AG S
Sbjct: 219 NFSAVKISTFSDGDFYGSYAENAAYSPSLSPLQSALSQFFLAGLS 263
>gi|392538186|ref|ZP_10285323.1| cytidine deaminase [Pseudoalteromonas marina mano4]
Length = 308
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 127/253 (50%), Gaps = 28/253 (11%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ E + ++ ++V LL LV A + P+S FHVGA+ L +
Sbjct: 33 LKSQRGILNTNNIEQLCKEFNVSVDSLLQGLVPLASEFSVAPVSHFHVGAIVKALDDQQQ 92
Query: 59 I--FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ + G NVEF L +HAEQ I N LN ++ +A+S APCG+CRQF+ EL +
Sbjct: 93 VNFYFGANVEFDHQALSLVVHAEQSAINNAWLNGAKKILKIAISDAPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCN--GQ 174
+ +I + S ++ L+ LLP FGP DL G F+L N Q
Sbjct: 153 AKEFDILLPS------QHFKLAELLPHSFGPTDL--------------GNEFSLFNPKPQ 192
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+ ++ + +A A ++ PYS+ S V + + GSY E+AAY+PSL P+
Sbjct: 193 LAVFDDKQIEETFAGF--ALNAYVPYSQNFSAVKLSTFNNGDFYGSYAENAAYSPSLSPL 250
Query: 235 QAALVAYLAAGGS 247
Q+AL + AG S
Sbjct: 251 QSALSQFFLAGLS 263
>gi|359434895|ref|ZP_09225137.1| cytidine deaminase [Pseudoalteromonas sp. BSi20652]
gi|357918470|dbj|GAA61386.1| cytidine deaminase [Pseudoalteromonas sp. BSi20652]
Length = 308
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 116/233 (49%), Gaps = 40/233 (17%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAV--GLGSSGRI--FLGGNVEFPGLPLHQSIHAEQFL 82
LL LV A A P+S FHVGA+ L G + + G NVEF L +HAEQ
Sbjct: 59 LLQGLVPLASEYAVAPVSDFHVGAIVKALDEKGEVSFYFGANVEFDHQALSLVVHAEQSA 118
Query: 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLP 142
I N LN ++ +A+S APCG+CRQF+ EL + + +I + + + L+ LLP
Sbjct: 119 INNAWLNGAKKIVKIAISDAPCGYCRQFMNELADAKEFDILLPT------QQFKLAELLP 172
Query: 143 DRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANK------- 195
FGP DL G F+L NPK +L +++ +K
Sbjct: 173 YSFGPTDL--------------GNEFSLF--------NPKPQLATFSVDDLDKKLARFAL 210
Query: 196 -SHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
++ PYS+ S V I + + GSY E+AAY+PSL P+Q+AL + AG S
Sbjct: 211 HAYVPYSQNFSAVKISTFDDGDFYGSYAENAAYSPSLSPLQSALSQFFLAGLS 263
>gi|414069217|ref|ZP_11405212.1| cytidine deaminase [Pseudoalteromonas sp. Bsw20308]
gi|410808332|gb|EKS14303.1| cytidine deaminase [Pseudoalteromonas sp. Bsw20308]
Length = 308
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ ++ +++ + ++ LL LV A A P+S FHVGA+ L G
Sbjct: 33 LKSQRGILNSSNIKALCAQLNVSDDALLQGLVPLASEYAVAPVSDFHVGAIVKALDEKGE 92
Query: 59 I--FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ + G NVEF L +HAEQ I N LN ++ +A+S APCG+CRQF+ EL +
Sbjct: 93 VNFYFGANVEFDHQALSLVVHAEQSAINNAWLNGAKKIVKIAISDAPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+ +I + + L+ LLP FGP DL G F+L N +
Sbjct: 153 AKEFDILLPD------QQFKLAELLPHSFGPTDL--------------GNEFSLFNPKPQ 192
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
+ + + L A ++ PYS+ S V I + GSY E+AAY+PSL P+Q+
Sbjct: 193 QGKFSFDGLDETLARFALNAYVPYSQNFSAVKISTFSDGDFYGSYAENAAYSPSLSPLQS 252
Query: 237 ALVAYLAAGGS 247
AL + AG S
Sbjct: 253 ALSQFFLAGLS 263
>gi|387769256|ref|ZP_10125522.1| putative cytidine deaminase [Pasteurella bettyae CCUG 2042]
gi|386907212|gb|EIJ71927.1| putative cytidine deaminase [Pasteurella bettyae CCUG 2042]
Length = 296
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 111/215 (51%), Gaps = 25/215 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQ LP A A PIS F+VGA+ +G SG + G N EF + Q++HAEQ I+
Sbjct: 58 LQCLPI----AACYALTPISHFNVGAIAIGISGNFYFGANQEFTAAAMQQTVHAEQSAIS 113
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + E + H+ V+ PCGHCRQF+ EL S + I + + H L LPD
Sbjct: 114 HAWIAGEKAIMHMVVNYTPCGHCRQFMNELNTASQLRIHLP-----HSQNHLLHSYLPDA 168
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET-ENPKERLKYAALEAANKSHAPYSKC 203
FGP DL + V L + QI ++ + + A + ++S+APYS+
Sbjct: 169 FGPKDLNIEKV--------------LFDPQIHSIQQHSDDPVVQAVIAGVSQSYAPYSQA 214
Query: 204 PSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
S VA+ E I G Y E+AA+NPS P+Q+AL
Sbjct: 215 LSAVALQIGE-QIIVGRYAENAAFNPSFLPLQSAL 248
>gi|359452730|ref|ZP_09242071.1| cytidine deaminase [Pseudoalteromonas sp. BSi20495]
gi|358050282|dbj|GAA78320.1| cytidine deaminase [Pseudoalteromonas sp. BSi20495]
Length = 308
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ ++ +++ + ++ LL LV A A P+S FHVGA+ L G
Sbjct: 33 LKSQRGILNSSNIKALCAQLSVSDDALLQGLVPLASEYAVAPVSDFHVGAIVKALDEKGE 92
Query: 59 I--FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ + G NVEF L +HAEQ I N LN ++ +A+S APCG+CRQF+ EL +
Sbjct: 93 VNFYFGANVEFDHQALSLVVHAEQSAINNAWLNGAKKIVKIAISDAPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+ +I + + L+ LLP FGP DL G F+L N +
Sbjct: 153 AKEFDILLPD------QQFKLAELLPHSFGPTDL--------------GNEFSLFNPKPQ 192
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
+ + L A ++ PYS+ S V I + GSY E+AAY+PSL P+Q+
Sbjct: 193 QGNFSFDGLDETLARFALNAYVPYSQNFSAVKISTFSDGDFYGSYAENAAYSPSLSPLQS 252
Query: 237 ALVAYLAAGGS 247
AL + AG S
Sbjct: 253 ALSQFFLAGLS 263
>gi|315123329|ref|YP_004065335.1| cytidine deaminase [Pseudoalteromonas sp. SM9913]
gi|315017089|gb|ADT70426.1| cytidine deaminase [Pseudoalteromonas sp. SM9913]
Length = 318
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 127/251 (50%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ +++ +++ + ++ LL LV A + PISKFHVGA+ GL S G
Sbjct: 42 LKTQRGILYSSDIKALCTELNVSDDALLQGLVPMASEFSVAPISKFHVGAIVKGLDSQGN 101
Query: 59 --IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ G N EF L +H EQ I N LN ++ +A+S PCG+CRQF+ EL +
Sbjct: 102 TTFYFGANAEFDHQALSLVVHGEQSAINNAWLNGGKKILKIAISDVPCGYCRQFMNELAD 161
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+++I + + N L+ LLP FGP DL ++ L + F
Sbjct: 162 AKELDILLPAQN------FKLAELLPHSFGPTDLGNEHS--LFNPAEQTNCF-------- 205
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E + E+L AL A + PYS+ S V I E + GSY E+AAY+PSL P+Q+
Sbjct: 206 ENKQLDEKLMSYALAA----YVPYSQNYSAVKISTFENGDFYGSYAENAAYSPSLSPLQS 261
Query: 237 ALVAYLAAGGS 247
A+ AG S
Sbjct: 262 AVSQLFLAGLS 272
>gi|359444397|ref|ZP_09234187.1| cytidine deaminase [Pseudoalteromonas sp. BSi20439]
gi|358041756|dbj|GAA70436.1| cytidine deaminase [Pseudoalteromonas sp. BSi20439]
Length = 318
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 127/251 (50%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ +++ +++ + ++ LL LV A + PISKFHVGA+ GL S G
Sbjct: 42 LKTQRGILYSSDIKALCTELNVSDDALLQGLVPMASEFSVAPISKFHVGAIVKGLDSQGN 101
Query: 59 --IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ G N EF L +H EQ I N LN ++ +A+S PCG+CRQF+ EL +
Sbjct: 102 TTFYFGANAEFDHQALSLVVHGEQSAINNAWLNGGKKILKIAISDVPCGYCRQFMNELAD 161
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+++I + + N L+ LLP FGP DL ++ L + F
Sbjct: 162 AKELDILLPAQN------FKLAELLPHSFGPTDLGNEHS--LFNPAEQTNCF-------- 205
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E + E+L AL A + PYS+ S V I E + GSY E+AAY+PSL P+Q+
Sbjct: 206 ENKQLDEKLMSYALAA----YVPYSQNYSAVKISTFENGDFYGSYAENAAYSPSLSPLQS 261
Query: 237 ALVAYLAAGGS 247
A+ AG S
Sbjct: 262 AVSQLFLAGLS 272
>gi|33152118|ref|NP_873471.1| cytidine deaminase [Haemophilus ducreyi 35000HP]
gi|78099198|sp|Q7VMJ6.1|CDD_HAEDU RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|33148340|gb|AAP95860.1| cytidine deaminase [Haemophilus ducreyi 35000HP]
Length = 299
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 20/225 (8%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ Q+ L+ ++L V A A P+S F VGAV +G SG + G N EF G+ +
Sbjct: 47 QQFCQQFSLSKIELGLGCVPIAACYALTPVSHFCVGAVAIGLSGSFYFGANQEFAGIAMQ 106
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
Q++HAEQ I++ L E + + V+ PCGHCRQF+ EL + + I + R+
Sbjct: 107 QTVHAEQSAISHAWLAGEGAISDMVVNCTPCGHCRQFMNELNTATTLQIHLP-----HRQ 161
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
++ L L D FGP DL +V L + Q + L A ++ A
Sbjct: 162 HNTLQQYLIDAFGPKDLNIANV--------------LFDQQHIVLPLQGDALVQATIKEA 207
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+++APYS+ S VA+ E I G Y E+AA+NPSL P+Q+AL
Sbjct: 208 QQAYAPYSQAVSAVALQVGE-QIICGRYAENAAFNPSLLPLQSAL 251
>gi|359437901|ref|ZP_09227950.1| cytidine deaminase [Pseudoalteromonas sp. BSi20311]
gi|358027388|dbj|GAA64199.1| cytidine deaminase [Pseudoalteromonas sp. BSi20311]
Length = 309
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 127/251 (50%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ +++ +++ + ++ LL LV A + PISKFHVGA+ GL S G
Sbjct: 33 LKTQRGILYSSDIKALCTELNVSEDILLQGLVPMASEFSVAPISKFHVGAIVKGLDSQGN 92
Query: 59 --IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ G N EF L +H EQ I N LN ++ +A+S PCG+CRQF+ EL +
Sbjct: 93 TTFYFGANAEFDHQALSLVVHGEQSAINNAWLNGGKKILKIAISDVPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+++I + + N L+ LLP FGP DL ++ L + F
Sbjct: 153 AKELDILLPAQN------FKLAELLPHSFGPTDLGNEHS--LFNPAEQTNCF-------- 196
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E + E+L AL A + PYS+ S V I E + GSY E+AAY+PSL P+Q+
Sbjct: 197 ENKQLDEKLMSYALAA----YVPYSQNYSAVKISTFENGDFYGSYAENAAYSPSLSPLQS 252
Query: 237 ALVAYLAAGGS 247
A+ AG S
Sbjct: 253 AVSQLFLAGLS 263
>gi|282857695|ref|ZP_06266905.1| cytidine deaminase (Cytidine aminohydrolase) (CDA) [Pyramidobacter
piscolens W5455]
gi|282584480|gb|EFB89838.1| cytidine deaminase (Cytidine aminohydrolase) (CDA) [Pyramidobacter
piscolens W5455]
Length = 200
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 106/223 (47%), Gaps = 39/223 (17%)
Query: 16 MAQKSGLTVLQL------------LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
M + G T +QL L + A AR P+S F VGA LG+SGR++LG
Sbjct: 1 MQRNGGETTIQLDMSRDKARVYAELAAFLDEAARAARTPLSGFRVGAAALGNSGRVYLGA 60
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N EF GLPL+ ++HAEQ + + E RL LAVSAAPCG+CRQFL EL+ DI
Sbjct: 61 NQEFAGLPLNFTVHAEQAAVVSARARGETRLTALAVSAAPCGYCRQFLTELKAPLDI--- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
+ + E + PL LP F + G L +P ++
Sbjct: 118 ---VRNGEAR--PLGAYLPHAF---------------ALERGGENLLSRAAVPNADD--- 154
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAA 226
L A AA S+APY+ SG+A+ G Y G +ES A
Sbjct: 155 -LDGLACAAAENSYAPYTGTRSGLALRTSSGRTYAGWLLESGA 196
>gi|326426437|gb|EGD72007.1| cytidine deaminase [Salpingoeca sp. ATCC 50818]
Length = 338
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 135/241 (56%), Gaps = 15/241 (6%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNV 65
+ I A++ +++ ++G+T L L+ A+TL+ PIS F+VGA LG+SG ++LG N
Sbjct: 7 WRISASDFDTITSRAGVTHTDALRALLPQARTLSVAPISNFNVGAAVLGASGNVYLGANN 66
Query: 66 EFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICIT 125
E + + +HAEQ + N L E ++ +A++A PCGHCRQF+ EL N DI I +
Sbjct: 67 EHTRVSIAACVHAEQCALANTFLGHEEAVRAIAITAMPCGHCRQFINELPNAKDITILVD 126
Query: 126 SINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLC-------NGQIPET 178
N + K+ LLP FGP+DL P+ +H L +G+ +
Sbjct: 127 --NHDPLKFEA---LLPHSFGPSDLHAD--PIHFLSHPRTPLRVLAAPTVVPGSGKDADA 179
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ +A+ AA S++P++ +G+ ++ + ++ +GSY+E+ A+NPSL P+Q AL
Sbjct: 180 AVAPKAAVESAVAAAEASYSPHTLSHAGLVLVIGDKHV-RGSYVENCAFNPSLPPLQMAL 238
Query: 239 V 239
+
Sbjct: 239 I 239
>gi|392307467|ref|ZP_10270001.1| cytidine deaminase [Pseudoalteromonas citrea NCIMB 1889]
Length = 286
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 33/252 (13%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAVGLG-SSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
LL L+ A + ++ P+S+F+VGA+ ++G + G N+EF L ++HAEQ I N
Sbjct: 42 LLQALLPVATSFSQAPVSQFNVGAIAYDKTTGNAYCGANLEFSHQALSLTVHAEQAAINN 101
Query: 86 LILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
LN + +A++A PCGHCRQF+ E+ + + + + ++ ++ L LLP F
Sbjct: 102 AWLNGAQTISVIAITAPPCGHCRQFMNEIADADSLKVVLPTLETD------LKTLLPHSF 155
Query: 146 GPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPS 205
GP DL ++ L ++H +I E ++L + A +APYS P+
Sbjct: 156 GPKDLGNEFCLLAAKSHD----------EIALPEQVSQQLARQFMLA----YAPYSNNPA 201
Query: 206 GVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS------------GGGGGG 253
V I + G Y E+AAYNPSL P+Q+AL AG + G
Sbjct: 202 AVEIKTVFHGSFYGRYAENAAYNPSLSPMQSALSQLALAGLTLNCVEVVSITLVETATGH 261
Query: 254 YERIVAAALVEK 265
++ VAAA++E
Sbjct: 262 NQKAVAAAVLES 273
>gi|213649239|ref|ZP_03379292.1| cytidine deaminase [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
Length = 218
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 19/203 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GNTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAI 209
AA+ AANKSH PYS PSGVA+
Sbjct: 193 QAAITAANKSHMPYSHSPSGVAL 215
>gi|254362503|ref|ZP_04978608.1| cytidine deaminase [Mannheimia haemolytica PHL213]
gi|153094100|gb|EDN75004.1| cytidine deaminase [Mannheimia haemolytica PHL213]
Length = 237
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 20/214 (9%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
+ + +K + ++L + A A P+S F+VGAV +G +G + G N EF G +
Sbjct: 44 DELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECMQ 103
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERK 133
QS+HAEQ I++ L E + + V+ PCGHCRQF+ EL + + + + + +N
Sbjct: 104 QSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN--- 160
Query: 134 YHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAA 193
L LPD FGP DL G+ L + Q + E + L+ AA+ AA
Sbjct: 161 --LLHSYLPDSFGPKDL--------------GIEKVLFDEQPQQFEVKGDHLQQAAIFAA 204
Query: 194 NKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
N ++APYS SGVA+ E I G Y E+AA+
Sbjct: 205 NNAYAPYSNAFSGVALQVGE-RIVCGKYTENAAF 237
>gi|392542004|ref|ZP_10289141.1| cytidine deaminase [Pseudoalteromonas piscicida JCM 20779]
Length = 288
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGS-SGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+L L+ A A PPIS+F+VGA+ S + FLG N+EF L +HAEQ I
Sbjct: 41 ELEAALLDVAAEFATPPISQFYVGAIAWDDKSQQAFLGANLEFSHQALSLVVHAEQAAIN 100
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
N LN + + ++AAPCG CRQF+ EL ++ I + + ++ L LLP
Sbjct: 101 NAWLNGATEISKMTINAAPCGFCRQFMNELSTAKELEILLPTGKTS------LCDLLPTS 154
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP+DL + + H + E + A + +++ PY+
Sbjct: 155 FGPDDLGNSEKLFSQAQH------------LAANETSPASISAALYQHYLRAYCPYTHNQ 202
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
S V I G + G Y E+AAYNPSL P+Q+AL
Sbjct: 203 SAVEIKLDTGECFYGRYAENAAYNPSLSPLQSAL 236
>gi|409200584|ref|ZP_11228787.1| cytidine deaminase [Pseudoalteromonas flavipulchra JG1]
Length = 288
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGS-SGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+L L++ A A PPIS+F+VGA+ S + FLG N+EF L +HAEQ I
Sbjct: 41 ELEAALLEVAAEFATPPISQFYVGAIAWDDKSQQAFLGANLEFSHQALSLVVHAEQAAIN 100
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
N LN + + ++AAPCG CRQF+ EL ++ I + + ++ L LLP
Sbjct: 101 NAWLNGATEISKMTINAAPCGFCRQFMNELSTAKELEILLPTGKTS------LCDLLPTS 154
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP+DL + + H + E + A +++ PY+
Sbjct: 155 FGPDDLGNSEKLFSQAQH------------LAANETSPASISAALYRHYLRAYCPYTHNQ 202
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
S V I G + G Y E+AAYNPSL P+Q+AL
Sbjct: 203 SAVEIKLDTGECFYGRYAENAAYNPSLSPLQSAL 236
>gi|77362227|ref|YP_341801.1| cytidine deaminase [Pseudoalteromonas haloplanktis TAC125]
gi|85540969|sp|Q3IBX5.1|CDD_PSEHT RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|76877138|emb|CAI89355.1| putative cytidine/deoxycytidine deaminase [Pseudoalteromonas
haloplanktis TAC125]
Length = 309
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 120/251 (47%), Gaps = 24/251 (9%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAV--GLGSSGR 58
++ R ++ A + + +T LL LV A A P+S FHVGA+ L SG
Sbjct: 33 LKTQRGILNANNINQLCAQLNVTNDALLQGLVPLASEFAVAPVSNFHVGAIVKALDESGE 92
Query: 59 I--FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN 116
+ + G N EF L +HAEQ I N LN ++ +A+S APCG+CRQF+ EL +
Sbjct: 93 VNFYFGANAEFNRQALSLVVHAEQSAINNAWLNGAKKILKIAISDAPCGYCRQFMNELAD 152
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP 176
+ +I + E+++ L+ LLP FGP DL G ++L N
Sbjct: 153 AREFDILLP-----EQQFK-LADLLPHSFGPTDL--------------GNQYSLFNPAPQ 192
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
++ A ++ PYS+ S V I + GSY E+AAY+PSL P+Q+
Sbjct: 193 ARSFNNTEVEQQLAAYALAAYVPYSQNYSAVKITTFNNGDFYGSYAENAAYSPSLSPLQS 252
Query: 237 ALVAYLAAGGS 247
AL AG S
Sbjct: 253 ALSQLFLAGLS 263
>gi|392545315|ref|ZP_10292452.1| cytidine deaminase [Pseudoalteromonas rubra ATCC 29570]
Length = 289
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 116/242 (47%), Gaps = 26/242 (10%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGS-SGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
QL L+ A + A+ PIS F VGAV S FLG N+EF L +HAEQ I
Sbjct: 41 QLGQALLPYAASFAQAPISSFLVGAVAYDKHSDHYFLGANLEFSHRALSLVVHAEQAAIN 100
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
N LN + L ++AAPCG+CRQF+ EL N + I + + + LS LLP
Sbjct: 101 NAWLNGAKEITSLDITAAPCGYCRQFMNELSNAKQLKITLPTGETT------LSQLLPGD 154
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
FGP DL +++ P N + L + ++ +APY+
Sbjct: 155 FGPTDLGNQESLF---------------DSAPIAINKVDELSDTLVSHLSQVYAPYTNNI 199
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVE 264
+ ++ G + G Y+E+AAY+PSL P+Q+AL + LA G ER A LVE
Sbjct: 200 AAAELVMENGKRFYGRYVENAAYSPSLSPMQSAL-SQLAMSGEILAEAKLER---ATLVE 255
Query: 265 KE 266
+
Sbjct: 256 TK 257
>gi|392550556|ref|ZP_10297693.1| cytidine deaminase [Pseudoalteromonas spongiae UST010723-006]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 107/215 (49%), Gaps = 32/215 (14%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAVGL--GSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+K A P+S+F V A+ + G GR+F G N+EF L +HAEQ I
Sbjct: 39 FFDALLKWVSEYAIAPVSQFKVAALAIESGGEGRLFFGANLEFSHQALSLVVHAEQSAIH 98
Query: 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
N +L+ ++ L ++A+PCG+CRQF+ E++ I + + ++Y LPD
Sbjct: 99 NALLHGVEAIKKLVINASPCGYCRQFINEIQLDKQPLINVHGVEKTIQQY------LPDA 152
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEA-ANKSHAPYSKC 203
FGP+D LD PL S C L+A +S+APYS
Sbjct: 153 FGPSD-LDNHTPLF------SQSLTQC----------------CDLDAYVEQSYAPYSGN 189
Query: 204 PSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
S I +G+ Y G Y+E+AAY+PSL P+QAAL
Sbjct: 190 FSACEIKHVDGHKYFGVYLENAAYSPSLSPLQAAL 224
>gi|242083442|ref|XP_002442146.1| hypothetical protein SORBIDRAFT_08g014967 [Sorghum bicolor]
gi|241942839|gb|EES15984.1| hypothetical protein SORBIDRAFT_08g014967 [Sorghum bicolor]
Length = 123
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
V++ LP L SA+ LAR PIS FHVGAVGLG+SGR+++G +VEF G+PL S+HAEQFL+
Sbjct: 2 VVRPLPIL--SARKLARVPISVFHVGAVGLGASGRVYVGVSVEFHGVPLCHSVHAEQFLV 59
Query: 84 TNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
N E L+ +AV PCGHCRQFLQE+R + I I +TS
Sbjct: 60 ANAAAAGESALRAVAVFHMPCGHCRQFLQEIRGATGIQILVTS 102
>gi|152978108|ref|YP_001343737.1| cytidine deaminase [Actinobacillus succinogenes 130Z]
gi|171472955|sp|A6VLF5.1|CDD_ACTSZ RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase; Short=CDA
gi|150839831|gb|ABR73802.1| Cytidine deaminase [Actinobacillus succinogenes 130Z]
Length = 296
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 112/217 (51%), Gaps = 19/217 (8%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
LT ++L + A A P+S F+VGAV +G SG + G N EF G + Q++HAEQ
Sbjct: 51 LTAVELALRCLPVAACYASAPVSHFNVGAVAVGQSGAFYFGANQEFSGDAVQQTVHAEQS 110
Query: 82 LITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+++ L E L + V+ PCGHCRQF+ EL + + I + +N L L
Sbjct: 111 AVSHAWLAGEVALTDMVVNYTPCGHCRQFMNELNSADRLQIHLPHSRNNR-----LHSYL 165
Query: 142 PDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYS 201
PD FGP DL V + H G + + L AA +AA +++APYS
Sbjct: 166 PDAFGPKDLNISRVLFDPQPHSFGFTH-------------ADPLVQAAADAAEQAYAPYS 212
Query: 202 KCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ SGVA+ +I G Y E+AA+NPS P+Q AL
Sbjct: 213 RALSGVALQVGTQSI-TGRYAENAAFNPSFLPLQCAL 248
>gi|407791267|ref|ZP_11138353.1| cytidine deaminase [Gallaecimonas xiamenensis 3-C-1]
gi|407200960|gb|EKE70963.1| cytidine deaminase [Gallaecimonas xiamenensis 3-C-1]
Length = 292
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 121/226 (53%), Gaps = 19/226 (8%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
SGL QL+ L+ A+ A IS F+VGA+ G SG + G N EF G L +IHAE
Sbjct: 46 SGLDKDQLMLALLPLARCFAHASISDFYVGAIVEGQSGIWYFGANQEFAGATLGMTIHAE 105
Query: 80 QFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
Q I + E +L LAV+ +PCG+CRQF+ E+ + + + R L+
Sbjct: 106 QCAINHARQQGEQQLVTLAVNYSPCGYCRQFMSEISQDLSLRVLLPG-----RPALTLAD 160
Query: 140 LLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAP 199
LPD FGP D LDK+ LL Q+ ++ + L AA +AA++SHAP
Sbjct: 161 YLPDAFGPWD-LDKE-ERLLAPRQHSLA-----------TTSTDPLHQAAAKAASQSHAP 207
Query: 200 YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
Y+ +GVA + + G+Y+E+AAYNPSL P+Q AL+ AG
Sbjct: 208 YTGTLAGVA-LQMGSQVVTGTYLENAAYNPSLPPLQGALIQAAMAG 252
>gi|238020547|ref|ZP_04600973.1| hypothetical protein GCWU000324_00433 [Kingella oralis ATCC 51147]
gi|237867527|gb|EEP68533.1| hypothetical protein GCWU000324_00433 [Kingella oralis ATCC 51147]
Length = 265
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 119/236 (50%), Gaps = 25/236 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P+ ++ A K L L LLP K LA P+S+FHVGA+ + G + G
Sbjct: 6 PKHEVQTRAAAFNGDKIAL-ALSLLPEAAK----LAVVPVSQFHVGAIAIDGEGNFYFGA 60
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N E + Q++HAEQ +++ R+ + V+ PCGHCRQFL EL + + I
Sbjct: 61 NQECATASMGQTVHAEQSAVSHAWQRGATRITDIVVNYTPCGHCRQFLNELPDAGSLKIH 120
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKE 183
+ + N L+ LPD F P DL ++P L T I + EN +
Sbjct: 121 LPHSHDNT-----LNSYLPDSFSPKDL---NIPERLLT--------PVQHAIRQPEN-LD 163
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGN-IYKGSYMESAAYNPSLGPVQAAL 238
+ AA AA HAPYS+ +G+A++ GN IY G Y E+AAYNP+L P+Q A+
Sbjct: 164 AAQQAAFAAAQTCHAPYSRAYAGIALV--AGNEIYTGRYAENAAYNPTLPPLQVAI 217
>gi|260654196|ref|ZP_05859686.1| cytidine deaminase [Jonquetella anthropi E3_33 E1]
gi|424845554|ref|ZP_18270165.1| cytidine deaminase [Jonquetella anthropi DSM 22815]
gi|260631181|gb|EEX49375.1| cytidine deaminase [Jonquetella anthropi E3_33 E1]
gi|363986992|gb|EHM13822.1| cytidine deaminase [Jonquetella anthropi DSM 22815]
Length = 241
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 113/240 (47%), Gaps = 32/240 (13%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L +++A+ A PIS F VGAV +GS+GR + G N+EFPG ++HAE +T
Sbjct: 4 QKLTERIEAAKRRAVVPISGFPVGAVAVGSTGRAYEGFNIEFPGCEPALTVHAEICAVTR 63
Query: 86 LILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD-R 144
E + L V+ PCGHCRQFL EL + + LPD
Sbjct: 64 AFQAGERAVDSLYVTETPCGHCRQFLWELSCRKTLKV-----------------FLPDGS 106
Query: 145 FGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCP 204
DLL P L + + + P T+ ++ L A EAA KS+ PYS
Sbjct: 107 LSLEDLL--PFPFSLREGSGFLGHETVSIR-PLTD--EDELTALAREAAEKSYCPYSAAR 161
Query: 205 SGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVE 264
G A+ G ++ GS E+AAYNP + VQAAL+A GG E + +A L E
Sbjct: 162 RGAALRGVGGTVWCGSAAENAAYNPGVTAVQAALIAR---------GGSSEAVSSAVLFE 212
>gi|28393348|gb|AAO42098.1| putative cytidine deaminase [Arabidopsis thaliana]
Length = 134
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 75/111 (67%), Gaps = 5/111 (4%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L AL+AA S+AP SKCPSGVA++D G +Y G YMES A+N SLGPVQAALV ++A
Sbjct: 27 LNCRALKAATISYAPDSKCPSGVALIDHRGKVYSGGYMESVAHNTSLGPVQAALVDFVA- 85
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHC 294
G G ++ IV A LVEK+ V+ QE AR++L+ I+ P C F V HC
Sbjct: 86 ---NGDGQEFKNIVEAVLVEKKCGVLSQEATARMILEKIADPDCIFRVLHC 133
>gi|253761839|ref|XP_002489294.1| hypothetical protein SORBIDRAFT_0011s015110 [Sorghum bicolor]
gi|241947043|gb|EES20188.1| hypothetical protein SORBIDRAFT_0011s015110 [Sorghum bicolor]
Length = 208
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI--NSNER 132
S+ FL+ N E L+ +AVS PCGHCRQFLQE+R + I I +TS +
Sbjct: 44 SLEFRGFLVANAAAAGESALRAVAVSHMPCGHCRQFLQEIRGAAGIQILVTSDVEQGHVP 103
Query: 133 KYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIP--ETENPKERLKYAAL 190
++ ++ LL FGP+DLL+K+VPL+LE H N + + + RL+ AA
Sbjct: 104 EWRTVASLLLRPFGPHDLLEKNVPLVLEAHDNALGDPVVTAAANGFALGDLDARLREAAE 163
Query: 191 EAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
AA +HAPY++CPSG A+ D +G IY GS S A+ SL
Sbjct: 164 AAARATHAPYNQCPSGFAVADGDGRIYAGSCWYSYAFRSSL 204
>gi|420373476|ref|ZP_14873579.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein, partial [Shigella flexneri 1235-66]
gi|391317217|gb|EIQ74562.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein, partial [Shigella flexneri 1235-66]
Length = 188
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFN 169
+ +G +
Sbjct: 178 DEQDHGYALT 187
>gi|421251194|ref|ZP_15707373.1| cytidine deaminase, partial [Pasteurella multocida subsp. multocida
str. Anand1_buffalo]
gi|401698450|gb|EJS90311.1| cytidine deaminase, partial [Pasteurella multocida subsp. multocida
str. Anand1_buffalo]
Length = 175
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 38 PYFTVE-----YLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 92
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 93 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 152
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ +N L LPD FGP DL
Sbjct: 153 LPHSQNNL-----LHSYLPDAFGPADL 174
>gi|145641357|ref|ZP_01796936.1| cytidine deaminase [Haemophilus influenzae R3021]
gi|145273900|gb|EDK13767.1| cytidine deaminase [Haemophilus influenzae 22.4-21]
Length = 164
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 23/171 (13%)
Query: 91 EPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
E R+ + V+ PCGHCRQF+ EL + I+I + +N PL LPD FGP DL
Sbjct: 4 ERRISDMVVNYTPCGHCRQFMNELHSAEKISIHLPHSQNN-----PLHSYLPDAFGPKDL 58
Query: 151 LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIM 210
D LL E + + ++ + ++ L A+ AAN+SH PYS P G+AI+
Sbjct: 59 -DIAAHLLAEENHDLVA------------DHQDDLVNQAILAANQSHCPYSNSPHGIAIL 105
Query: 211 DCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGYERIVAA 260
G++ G Y E+AA+NPSL +Q AL AYL + ERIV A
Sbjct: 106 FKNGDVVTGRYAENAAFNPSLPALQTALNFAYL----NDRKLSDIERIVMA 152
>gi|427774675|ref|ZP_18967131.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|414064731|gb|EKT45607.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 189
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFN 169
R H L LPD FGP DL K LL++ +G +
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT 187
>gi|412988820|emb|CCO15411.1| cytidine deaminase [Bathycoccus prasinos]
Length = 513
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 128/341 (37%), Gaps = 130/341 (38%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
V L LV + ARPP S FHVGA L + G IFLG NVE L++S+HAEQ
Sbjct: 68 FDVDDFLRRLVHEVKEYARPPTSNFHVGAACLTNRGNIFLGVNVEVEKCALNRSVHAEQC 127
Query: 82 LITNL---ILNAE----------------------------------------------P 92
+ITN I NAE
Sbjct: 128 MITNAMVGIRNAELEEYRRKEKMKGGKKTKEEREKERRKEHERNNNNNNNNESNEEEEKE 187
Query: 93 RLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-- 150
++ +A++ APCGHCRQF+ ELR+ DI I + + + L LLP FGP DL
Sbjct: 188 KIVKIAITHAPCGHCRQFMNELRDAKDIQILLPGMAAMR-----LEELLPKAFGPLDLEV 242
Query: 151 ---------------------------------------------------LDKDVPLLL 159
++K LL
Sbjct: 243 PGDEEHREERIKRRKSEGSDAIVVDEEKVHVRTLLLDGCPPNPRDRDGLGTMEKFCKLLR 302
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALE----AANKSHAPYSKCPSGVAI-MDCEG 214
E ++G + GQ +E +AA+E S+APY+ P +AI ++ +
Sbjct: 303 EALEDG---RIRFGQFSFGNLEEEERIFAAMEELAHTMAHSYAPYTDSPCAIAIPLEYQR 359
Query: 215 NI---------------YKGSYMESAAYNPSLGPVQAALVA 240
++ Y G+ +E AAYNPS+ P+ A VA
Sbjct: 360 SLEERWKTGDKRSGMRFYFGASVECAAYNPSMTPMHAMQVA 400
>gi|167386580|ref|XP_001737821.1| cytidine deaminase [Entamoeba dispar SAW760]
gi|165899273|gb|EDR25912.1| cytidine deaminase, putative [Entamoeba dispar SAW760]
Length = 312
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 32/279 (11%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLV--KSAQTLARPPISKFHVGAVGL-GSSGRIF 60
P+ +++ + + Q +++ L LV S L +P S+F VG SG +
Sbjct: 40 PKILLDQLKNQHKGQDEIELLVETLKPLVCIGSCYALCKP--SQFPVGGCCYCKESGNAY 97
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+G N+E G + S+H EQ N +++ E ++ L +S PCGHCRQ+L + N +
Sbjct: 98 IGFNMESAGHWIGYSVHGEQCTTNNALIHGEKKIDLLVISYTPCGHCRQYLNQFSNRDEF 157
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDL---LDKDVPLLLETHQNGMSFNLCNGQIPE 177
I ++N R +H L LLP F P+DL + D + + G ++
Sbjct: 158 LCHIVTLN---RTFH-LRELLPFDFRPSDLPSIIFPDTSKFIIKSKKGDEIDI------- 206
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
+ ++ A SH C GV ++ IY G+Y+ES A+NPS P+ A
Sbjct: 207 ------KFINQVIDCAKHSHVDNLMCYLGVGLI-IGKEIYLGNYIESCAHNPSFHPMNGA 259
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAA 276
+ + G + + LV+ E A + E +A
Sbjct: 260 ISQLILNGKD------VSEVDSIILVQYEKAPFKMEESA 292
>gi|429087323|ref|ZP_19150055.1| Cytidine deaminase [Cronobacter universalis NCTC 9529]
gi|426507126|emb|CCK15167.1| Cytidine deaminase [Cronobacter universalis NCTC 9529]
Length = 198
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + + ++SGL L L+ A A+ IS F+VGA+ G SG ++ G N+E
Sbjct: 32 MLNAEQVADIRRQSGLDDDALAFALLPLAAACAQTGISHFNVGAIARGLSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q+IHAEQ IT+ + E L + V+ PCGHCRQF+ EL +
Sbjct: 92 FRGAAMQQTIHAEQSAITHAWMRGETGLAAITVNYTPCGHCRQFMNELNSG-----LTLR 146
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
IN R L LPD FGP DL K + E H
Sbjct: 147 INLPGRAPSQLGDYLPDAFGPRDLDIKTLIFDTENH 182
>gi|449710338|gb|EMD49434.1| cytidine deaminase,putative [Entamoeba histolytica KU27]
Length = 312
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 26/276 (9%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLV--KSAQTLARPPISKFHVGAVGL-GSSGRIF 60
P+ +++ ++ Q +++ L LV S L +P S+F VG SG +
Sbjct: 40 PKILVDQLKSHHKGQDEIDLLVETLKPLVCIGSCYALCKP--SQFPVGGCCYCKESGNAY 97
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+G N+E G + S+H EQ N +++ E ++ L +S PCGHCRQ+L + N +
Sbjct: 98 IGFNMESAGRWIGYSVHGEQCTTNNALIHGEKKIDLLVISYTPCGHCRQYLNQFANRDEF 157
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETEN 180
I ++N R +H L LLP F P+DL P +T + + + ++
Sbjct: 158 LCHIVTLN---RTFH-LRELLPFDFRPSDLPSITFP---DTSKFVIKSKV-------GDD 203
Query: 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA 240
+ ++ A SH C GV ++ IY G+Y+ES A+NPS P+ A ++
Sbjct: 204 VDMKFINQVIDCAKDSHVDNLMCYLGVGLV-IGKEIYLGNYIESCAHNPSFHPMNGA-IS 261
Query: 241 YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAA 276
L G + + LV+ E++ + E +A
Sbjct: 262 QLTLNGK-----DVSDVDSIILVQYENSPFKMEESA 292
>gi|67481983|ref|XP_656341.1| cytidine deaminase [Entamoeba histolytica HM-1:IMSS]
gi|56473534|gb|EAL50955.1| cytidine deaminase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 312
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 26/276 (9%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLV--KSAQTLARPPISKFHVGAVGL-GSSGRIF 60
P+ +++ ++ Q +++ L LV S L +P S+F VG SG +
Sbjct: 40 PKTLVDQLKSHHKGQDEIDLLVETLKPLVCIGSCYALCKP--SQFPVGGCCYCKESGNAY 97
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDI 120
+G N+E G + S+H EQ N +++ E ++ L +S PCGHCRQ+L + N +
Sbjct: 98 IGFNMESAGRWIGYSVHGEQCTTNNALIHGEKKIDLLVISYTPCGHCRQYLNQFANRDEF 157
Query: 121 NICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETEN 180
I ++N R +H L LLP F P+DL P +T + + + ++
Sbjct: 158 LCHIVTLN---RTFH-LRELLPFDFRPSDLPSITFP---DTSKFVIKSKV-------GDD 203
Query: 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA 240
+ ++ A SH C GV ++ IY G+Y+ES A+NPS P+ A ++
Sbjct: 204 VDMKFINQVIDCAKDSHVDNLMCYLGVGLV-IGKEIYLGNYIESCAHNPSFHPMNGA-IS 261
Query: 241 YLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAA 276
L G + + LV+ E++ + E +A
Sbjct: 262 QLTLNGK-----DVSDVDSIILVQYENSPFKMEESA 292
>gi|270702685|ref|ZP_06223067.1| cytidine deaminase, partial [Haemophilus influenzae HK1212]
gi|270315830|gb|EFA27938.1| cytidine deaminase [Haemophilus influenzae HK1212]
Length = 124
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 18/142 (12%)
Query: 97 LAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP 156
+ V+ PCGHCRQF+ EL I+I + +N PL L D FGP DL D
Sbjct: 1 MVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNN-----PLHSYLLDAFGPKDL-DIAAH 54
Query: 157 LLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNI 216
LL E + + ++ + ++ L A+ AAN+SH PYS P G+AI+ G++
Sbjct: 55 LLAEENHDLIA------------DHQDDLINQAILAANQSHCPYSNSPHGIAILFKNGDV 102
Query: 217 YKGSYMESAAYNPSLGPVQAAL 238
G Y E+AA+NPSL +Q AL
Sbjct: 103 VTGRYAENAAFNPSLPALQTAL 124
>gi|417512000|ref|ZP_12176449.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353641203|gb|EHC85995.1| Cytidine deaminase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 147
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 132 RKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALE 191
R H L LPD FGP DL K LL++ +G + + L AA+
Sbjct: 5 RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLTQAAIT 50
Query: 192 AANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGG 251
AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 51 AANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNGY---- 105
Query: 252 GGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 106 -DYADIQRAILAEKGDAALIQWDATAATLKAL 136
>gi|440297895|gb|ELP90536.1| cytidine deaminase, putative [Entamoeba invadens IP1]
Length = 315
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 23/241 (9%)
Query: 11 AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGL-GSSGRIFLGGNVEFPG 69
A +ES ++ L + L LVK A A S+F VG SG ++G N+E
Sbjct: 51 AMSESTSEDDQL--VNALKPLVKIAYKYALCKPSQFPVGGCCYCKESGNAYIGFNMESEK 108
Query: 70 LPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINS 129
+ S+HAEQ N +++ E + L VS PCGHCRQF+ + + + I I +IN
Sbjct: 109 HWIGYSVHAEQCTFNNALIHGEKVIDLLVVSYTPCGHCRQFINQFAFSKTLKIFIVTIN- 167
Query: 130 NERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAA 189
K + LLP F P DL + + P +T N C ++ + +++
Sbjct: 168 ---KAFNVHDLLPYDFSPADLPEINFP---DTD------NFCVKKMEGDKVDDLKIE-QV 214
Query: 190 LEAANKSHAP--YSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
++AA KSH + C G+ + D + G+++E+ A+NPS P+ A ++ L G
Sbjct: 215 IKAAKKSHLDNLANYCAVGLFVKD---KAFFGNFLENCAHNPSFHPMNGA-ISQLVLNGF 270
Query: 248 G 248
G
Sbjct: 271 G 271
>gi|418490662|ref|ZP_13057201.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366065199|gb|EHN29390.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
Length = 164
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPD 143
R H L LPD
Sbjct: 152 -----RAPHTLRDYLPD 163
>gi|416055303|ref|ZP_11579396.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|348003158|gb|EGY43810.1| cytidine deaminase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
Length = 145
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 137 LSHLLPDRFGPNDLLDKDVPL-LLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANK 195
L LPD FGP DL ++ L LL+ H N +S N +NP L AL AN+
Sbjct: 9 LHQYLPDAFGPKDL---NIQLRLLDQHDNQLSLN--------NDNP---LVLQALAMANQ 54
Query: 196 SHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYE 255
+HAPYS G+AI IY GSY E+AA+NPSL +Q AL + +G E
Sbjct: 55 AHAPYSNSFHGIAIQTRNQQIYHGSYAENAAFNPSLPAMQVALNHLILSGEE------VE 108
Query: 256 RIVAAALVEKEDAVVRQEHAARLL 279
IV +VEK + + + A +LL
Sbjct: 109 NIVRVVMVEKSNTLHYKAMAEKLL 132
>gi|429096968|ref|ZP_19159074.1| Cytidine deaminase [Cronobacter dublinensis 582]
gi|426283308|emb|CCJ85187.1| Cytidine deaminase [Cronobacter dublinensis 582]
Length = 159
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 79/158 (50%), Gaps = 22/158 (13%)
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDV-PLLLETHQNGMSFNLCNGQIPETENPKERL 185
IN R L LPD FGP DL D+ L+ +T +G + + L
Sbjct: 12 INLPGRAPSKLGDYLPDAFGPRDL---DIRTLIFDTENHGYALQ------------GDAL 56
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA+ AAN+SHAPYS+ PSG+AI +G ++ GSY E+AA+NPSL P+QAAL
Sbjct: 57 TQAAIAAANRSHAPYSQSPSGLAIETRDGAVFTGSYAENAAFNPSLPPLQAALNLLCL-- 114
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G + I A L E+ DA + Q A L +
Sbjct: 115 ----NGYAWRDIQRAVLAERSDAAIVQRDATAATLNAL 148
>gi|320539125|ref|ZP_08038796.1| putative cytidine/deoxycytidine deaminase, partial [Serratia
symbiotica str. Tucson]
gi|320030763|gb|EFW12771.1| putative cytidine/deoxycytidine deaminase [Serratia symbiotica str.
Tucson]
Length = 135
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ Q SGL L L+ A + PIS F+VGA+ G SG ++ G N+E
Sbjct: 32 MLTAEQTAAIRQYSGLDDDALACALLPLAAAYSLAPISHFNVGAIAQGQSGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQF 110
F G+P+ Q++HAEQ + + L E L + V+ PCGHCRQF
Sbjct: 92 FSGVPMQQTVHAEQSAVIHAWLRGETALVAITVNYRPCGHCRQF 135
>gi|417511998|ref|ZP_12176448.1| Cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|353641222|gb|EHC86011.1| Cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
Length = 137
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFL 111
+ PCGHCRQF+
Sbjct: 125 NYTPCGHCRQFM 136
>gi|417840392|ref|ZP_12486528.1| putative cytidine/deoxycytidylate deaminase, zinc-binding
domain-containing protein [Haemophilus haemolyticus
M19107]
gi|341948521|gb|EGT75148.1| putative cytidine/deoxycytidylate deaminase, zinc-binding
domain-containing protein [Haemophilus haemolyticus
M19107]
Length = 154
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 21/156 (13%)
Query: 136 PLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANK 195
PL LPD FGP DL L +E H + + + Q + L A+ AAN+
Sbjct: 17 PLHSYLPDAFGPKDLDIAAHLLAVENH-----YLVADHQ--------DDLMNQAILAANQ 63
Query: 196 SHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL-VAYLAAGGSGGGGGGY 254
SH PYS P G+AI+ G++ G Y E+AA+NPSL +Q A AYL +
Sbjct: 64 SHCPYSNSPHGIAILFKNGDVVTGRYAENAAFNPSLPALQTAFNFAYL----NDKKLSDI 119
Query: 255 ERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFN 290
ERIV A EK + + A LL ++ S K E++
Sbjct: 120 ERIVMA---EKALKLSHKTMAETLLSKLTSVKLEYH 152
>gi|418486680|ref|ZP_13055629.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366072979|gb|EHN37059.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
Length = 107
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ L AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L
Sbjct: 2 DTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLL 60
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ G Y I A L EK DA + Q A L+ +
Sbjct: 61 SLNGY-----DYADIQRAILAEKGDAALIQWDATAATLKAL 96
>gi|71279710|ref|YP_268699.1| cytidine deaminase [Colwellia psychrerythraea 34H]
gi|71145450|gb|AAZ25923.1| cytidine deaminase [Colwellia psychrerythraea 34H]
Length = 139
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 19 KSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHA 78
K+ + L + K A A P SKFHVGA L + G I G NVE L +I A
Sbjct: 3 KNKIERFDELLSAAKEAYQRAYAPYSKFHVGASALTTDGDIVNGCNVENASYGL--TICA 60
Query: 79 EQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNER 132
E+ I++ ++ + + + + PCG CRQ + E S + + + + N+R
Sbjct: 61 ERNCISHAVVQGKQMFKFIMIYTEQDKLTPPCGACRQVIAEFFEQSALVVAVN--HKNDR 118
Query: 133 KYHPLSHLLPDRFGPNDLLD 152
K + LLPD F P DLLD
Sbjct: 119 KIWTVQQLLPDAFTPKDLLD 138
>gi|1483233|emb|CAA62521.1| cytidine deaminase [Brugia pahangi]
Length = 133
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + + A A P SKF VGA L G+I GGNVE +I AE+ +T +
Sbjct: 8 LTSAARLAMDRAYCPYSKFTVGAALLTKDGKIITGGNVE--SASYGGTICAERSAVTRAV 65
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
Q +AV A APCG CRQFL E D+ + + S SN+R LS L+
Sbjct: 66 AEGYREFQAVAVCATPAEPTAPCGLCRQFLIEF---GDMKVIMISSTSNKRIEMQLSQLI 122
Query: 142 PDRFGPNDLL 151
P F DL+
Sbjct: 123 PLSFTTKDLI 132
>gi|374998422|ref|YP_004973921.1| Cytidine deaminase [Azospirillum lipoferum 4B]
gi|357425847|emb|CBS88746.1| Cytidine deaminase [Azospirillum lipoferum 4B]
Length = 139
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L L + A+ A P SKF VGA LG SGRIF G NVE P Q AE I
Sbjct: 7 LARLIEAARVARENAHAPYSKFKVGAAILGESGRIFAGCNVENAAYPQGQC--AESSAIG 64
Query: 85 NLILNAEPRLQHLAVSAA---------PCGHCRQFLQELRN-TSDINICITSINSNERKY 134
++ + R++ +AV PCG CRQ ++E + I+IC + R+
Sbjct: 65 AMVTAGDRRIRAIAVMGGEAGAEEICTPCGGCRQRIREFATLETPIHICDP---AGLRRT 121
Query: 135 HPLSHLLPDRFGPNDL 150
PL LLP+ FGP +L
Sbjct: 122 FPLETLLPESFGPTNL 137
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 178 TENPK-ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
T+ P+ RL AA A +HAPYSK G AI+ G I+ G +E+AAY +
Sbjct: 2 TDTPELARLIEAARVARENAHAPYSKFKVGAAILGESGRIFAGCNVENAAYPQGQCAESS 61
Query: 237 ALVAYLAAG 245
A+ A + AG
Sbjct: 62 AIGAMVTAG 70
>gi|407474265|ref|YP_006788665.1| cytidine deaminase Cdd [Clostridium acidurici 9a]
gi|407050773|gb|AFS78818.1| cytidine deaminase Cdd [Clostridium acidurici 9a]
Length = 129
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P SKF VG+ L G+I+ G N+E +I AE+ I+ + +
Sbjct: 13 AKEKAYAPYSKFKVGSAVLTKDGKIYTGCNIE--SASYTPTICAERTAISKAVSEGDREF 70
Query: 95 QHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149
+ +A+ + PCG CRQ ++E + DI + + + N++E K L LLP+ FGP+D
Sbjct: 71 EAIAIVGSSDYTFPCGVCRQVIREF--SKDIKVIVAN-NTDEYKIFELEELLPNSFGPDD 127
Query: 150 L 150
L
Sbjct: 128 L 128
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A+EA K++APYSK G A++ +G IY G +ESA+Y P++ + A+ ++ G
Sbjct: 10 AIEAKEKAYAPYSKFKVGSAVLTKDGKIYTGCNIESASYTPTICAERTAISKAVSEG 66
>gi|170576775|ref|XP_001893761.1| cytidine deaminase, identical [Brugia malayi]
gi|158600043|gb|EDP37402.1| cytidine deaminase, identical [Brugia malayi]
Length = 133
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + + A A P SKF VGA L G+I GGNVE +I AE+ +T +
Sbjct: 8 LTSAARLAMDRAYCPYSKFTVGAALLTKDGKIIXGGNVE--NASYGGTICAERSAVTRAV 65
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
Q +AV A APCG CRQFL E D+ + + S SN+R LS L+
Sbjct: 66 AEGYREFQAVAVCATPAEPTAPCGLCRQFLIEF---GDMKVIMISSTSNKRIEMQLSQLI 122
Query: 142 PDRFGPNDLL 151
P F DL+
Sbjct: 123 PLSFTTKDLI 132
>gi|1813698|gb|AAC47631.1| cytidine deaminase [Brugia malayi]
Length = 133
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + + A A P SKF VGA L G+I GGNVE +I AE+ +T +
Sbjct: 8 LTSAARLAMDRAYCPYSKFTVGAALLTKDGKIITGGNVE--NASYGGTICAERSAVTRAV 65
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
Q +AV A APCG CRQFL E D+ + + S SN+R LS L+
Sbjct: 66 AEGYREFQAVAVCATPAEPTAPCGLCRQFLIEF---GDMKVIMISSTSNKRIEMQLSQLI 122
Query: 142 PDRFGPNDLL 151
P F DL+
Sbjct: 123 PLSFTTKDLI 132
>gi|402587634|gb|EJW81569.1| cytidine deaminase [Wuchereria bancrofti]
Length = 133
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L + + A A P SKF VGA L +G++ GGNVE +I AE+ +T
Sbjct: 5 IDALTSAARLAMDRAYCPYSKFTVGAALLTKNGKVITGGNVE--NASYGGTICAERSAVT 62
Query: 85 NLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ Q +AV A APCG CRQFL E D+ + + S SN+R LS
Sbjct: 63 RAVAEGYREFQAVAVCATPAEPTAPCGLCRQFLIEF---GDMKVIMMSSTSNKRIEMQLS 119
Query: 139 HLLPDRFGPNDL 150
LLP F DL
Sbjct: 120 QLLPLSFTSKDL 131
>gi|296423732|ref|XP_002841407.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637645|emb|CAZ85598.1| unnamed protein product [Tuber melanosporum]
Length = 173
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 16 MAQKSGLT--VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
M+Q GLT +Q L +A+ ++ P S F VG L G +G N+E P+
Sbjct: 1 MSQTYGLTPEEIQELSKRAAAAKDVSYSPYSNFRVGCALLCEDGSWVIGANIENASYPV- 59
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSI 127
+I AE+ + I + R + + +S A+PCG CRQF++E + S + I +
Sbjct: 60 -TICAERTALVKAITEGKKRFRAIGLSVDVSPPASPCGMCRQFIREFSDGS-VPIFMYGK 117
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDK 153
E L LLP FGP+DL D+
Sbjct: 118 EVGECVVRTLGELLPMSFGPDDLPDR 143
>gi|324526866|gb|ADY48725.1| Cytidine deaminase [Ascaris suum]
Length = 156
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 19 KSGLTVLQLLPTLVKSAQ-TLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
K G T+ + LV +A+ + R P SKF VGA L G + GGNVE +
Sbjct: 11 KVGRTMTVDVNALVNAAKRAMERSYCPYSKFRVGAAVLTKDGAVITGGNVE--NASYGGT 68
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINS 129
I AE+ + + + +A++ A PCG CRQFL E N + + + S S
Sbjct: 69 ICAERSAVVRAVAEGYTEFRAIAIAGATAEPISPCGICRQFLVEFGN---VQVIMASTLS 125
Query: 130 NERKYHPLSHLLPDRFGPNDLLD 152
N+R L+ LLP FGP L D
Sbjct: 126 NKRIETTLNKLLPQSFGPKSLTD 148
>gi|320540976|ref|ZP_08040442.1| putative cytidine/deoxycytidine deaminase, partial [Serratia
symbiotica str. Tucson]
gi|320028962|gb|EFW11175.1| putative cytidine/deoxycytidine deaminase [Serratia symbiotica str.
Tucson]
Length = 159
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 74/141 (52%), Gaps = 19/141 (13%)
Query: 137 LSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKS 196
L+ LPD FGP DL LL++ +G L ++L AAL AAN+S
Sbjct: 22 LADHLPDAFGPKDL--GIATLLMDQINHGYQLTLT-----------DKLAQAALAAANQS 68
Query: 197 HAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYER 256
+APYS SG+A+ +G +Y G Y E+AA+NPSL P+QA+L+ + GG +
Sbjct: 69 YAPYSNAHSGLALAAEDGRVYAGRYAENAAFNPSLPPLQASLILFNLLGGD------CMK 122
Query: 257 IVAAALVEKEDAVVRQEHAAR 277
I A L E + A++ Q R
Sbjct: 123 IRRAVLAEPQSAILGQWDMTR 143
>gi|389696702|ref|ZP_10184344.1| cytidine deaminase, homotetrameric [Microvirga sp. WSM3557]
gi|388585508|gb|EIM25803.1| cytidine deaminase, homotetrameric [Microvirga sp. WSM3557]
Length = 134
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+T L L K+ Q A P S+F VGA GRIF+G NVE P+ AE
Sbjct: 1 MTSLDTLFEAAKAIQAKAYAPYSRFKVGAAIATPDGRIFVGCNVENAAYPVGSC--AEAG 58
Query: 82 LITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYH 135
I+ +I E R+ + V PCG CRQ ++E SD I I RK
Sbjct: 59 AISAMIAAGESRIAAIVVMGEGEHLVTPCGGCRQRIREF-AASDTPIHIAG-PEGIRKRF 116
Query: 136 PLSHLLPDRFGPNDLLDK 153
L LLP FGP++L D+
Sbjct: 117 TLDALLPFSFGPDNLTDR 134
>gi|160947546|ref|ZP_02094713.1| hypothetical protein PEPMIC_01481 [Parvimonas micra ATCC 33270]
gi|158446680|gb|EDP23675.1| cytidine deaminase [Parvimonas micra ATCC 33270]
Length = 131
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 25 LQLLPTLVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+ + ++K A Q A P S F+VGA L SG+I+ G N+E ++ AE+
Sbjct: 1 MNIYKKMIKCALESQKKAYTPYSNFNVGASVLTDSGKIYGGCNIE--NASYTPTVCAERV 58
Query: 82 LITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYH 135
I I + E ++ +AV PCG CRQ ++E T D I I N E K
Sbjct: 59 AIFKAIYDGEKKITKIAVVGKENSLTYPCGVCRQVMKEF-CTDDCEIIIIR-NEQEYKII 116
Query: 136 PLSHLLPDRFGPNDL 150
S +LP FGP DL
Sbjct: 117 KFSEILPYSFGPKDL 131
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 180 NPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
N +++ ALE+ K++ PYS G +++ G IY G +E+A+Y P++ + A+
Sbjct: 2 NIYKKMIKCALESQKKAYTPYSNFNVGASVLTDSGKIYGGCNIENASYTPTVCAERVAIF 61
Query: 240 AYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
+ G ++I A+V KE+++ R +++
Sbjct: 62 KAIYDGE--------KKITKIAVVGKENSLTYPCGVCRQVMK 95
>gi|189520649|ref|XP_001923622.1| PREDICTED: cytidine deaminase-like [Danio rerio]
Length = 139
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q+L + A+ LA P S+F VGA L S G +F G NVE + AE+ I+
Sbjct: 7 QVLVQRSQEARKLAYCPYSRFRVGAAVLTSDGTVFTGCNVE--NACYTAGLCAERTAISK 64
Query: 86 LILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + +A+++ +PCG CRQF++E + D+ + S K +
Sbjct: 65 AVSEGHTTFKAIAIASDLEDRFISPCGACRQFMREFGSQWDVYL---SKTDGSFKQMTVE 121
Query: 139 HLLPDRFGPNDLLDKDVP 156
LLP FGP+DL ++ P
Sbjct: 122 ELLPCSFGPDDLRARENP 139
>gi|49259416|pdb|1UX1|A Chain A, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
gi|49259417|pdb|1UX1|B Chain B, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
gi|49259418|pdb|1UX1|C Chain C, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
gi|49259419|pdb|1UX1|D Chain D, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
Length = 136
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + HAEQ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCN--HAEQTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+ Q AL
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNHAEQTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|259486689|tpe|CBF84747.1| TPA: cytidine deaminase, putative (AFU_orthologue; AFUA_8G02770)
[Aspergillus nidulans FGSC A4]
Length = 138
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 26/140 (18%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++LL + +A+ A P SKF VGA L SG F G NVE P+ AE+
Sbjct: 9 IELLASKANAAKEAAYCPYSKFRVGAALLTQSGEFFTGANVENASYPVGTC--AERVAFG 66
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTS--------DINICITSINSN 130
++ R + +AV+ A+PCG CRQF+ E S ++N I S
Sbjct: 67 TAVVAGHRRFKAIAVATDIKPPASPCGMCRQFMSEFTTRSFPVYMYDKEMNCSIIS---- 122
Query: 131 ERKYHPLSHLLPDRFGPNDL 150
+ LLP+ FGP D
Sbjct: 123 ------MGELLPNSFGPEDF 136
>gi|407277912|ref|ZP_11106382.1| cytidine deaminase [Rhodococcus sp. P14]
Length = 124
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA L GRI +G NVE + + AE L+ NLI RL+ +AV
Sbjct: 7 PYSRFPVGAAALVDDGRIVVGCNVE--NVSHGVGLCAECVLVGNLISGGGGRLRAVAVCD 64
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
A PCG CRQ L E ++ + R PLS LLPD FGP DL
Sbjct: 65 ARGAVLSPCGRCRQILAE-HGGPELEV------DTRRGPRPLSELLPDAFGPGDL 112
>gi|242798464|ref|XP_002483175.1| mitochondrial ornithine carrier protein AmcA/Ort1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716520|gb|EED15941.1| mitochondrial ornithine carrier protein AmcA/Ort1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 494
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T LQ + A+ A P SKF VGA + ++G G N+E P+ I AE+
Sbjct: 364 TELQTISQKAIQAKEKAYCPYSKFRVGACIITTTGEYIFGANIENASYPV--GICAERVA 421
Query: 83 ITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
N ++ + +AV+ A+PCG CRQF++E S I + E K
Sbjct: 422 FGNALMQGHKSFKAIAVATDIKPGASPCGMCRQFMREFTPPS-FPIYMYD-KDGEYKIAT 479
Query: 137 LSHLLPDRFGPNDL 150
+ LLPD FGP+DL
Sbjct: 480 IGDLLPDSFGPDDL 493
>gi|427774703|ref|ZP_18967132.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|414064724|gb|EKT45601.1| cytidine deaminase, partial [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 98
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGG 252
ANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 3 ANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNGY----- 56
Query: 253 GYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 57 DYADIQRAILAEKGDAALIQWDATAATLKAL 87
>gi|227485437|ref|ZP_03915753.1| cytidine deaminase [Anaerococcus lactolyticus ATCC 51172]
gi|227236567|gb|EEI86582.1| cytidine deaminase [Anaerococcus lactolyticus ATCC 51172]
Length = 129
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 27 LLPTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
++ L+K A L A P S FHV V + SG+IF G NVE S+ AE+ +
Sbjct: 1 MIKDLIKKALDLKERAYAPYSNFHVACVVMTKSGKIFEGVNVE--NAAYSPSLCAERNAL 58
Query: 84 TNLILNAEPRLQHLAVS-----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ I E ++ ++ PCG CRQF++E + D I + + N + Y +
Sbjct: 59 STAITQGERDFAYIVITGDSDYTYPCGVCRQFIREFAD-GDTRIVVAKDSENYKTY-TIE 116
Query: 139 HLLPDRFGPNDL 150
LLP+ F DL
Sbjct: 117 DLLPESFSKKDL 128
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL+ +++APYS +M G I++G +E+AAY+PSL + AL + G
Sbjct: 9 ALDLKERAYAPYSNFHVACVVMTKSGKIFEGVNVENAAYSPSLCAERNALSTAITQG 65
>gi|403069946|ref|ZP_10911278.1| cytidine:deoxycytidine deaminase [Oceanobacillus sp. Ndiop]
Length = 134
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA L SG+++ G N+E P+ + AE+ I I E Q LAV+A
Sbjct: 20 PYSKFQVGAALLTKSGKVYTGCNIENAAYPV--TCCAERVAIFKAISEGETEFQELAVAA 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ + E + +NI +T++ NE K + LLP F +D+
Sbjct: 78 DSARPVPPCGSCRQVMSEFFPKT-MNIHLTNLK-NETKTFTMEELLPFSFETHDM 130
>gi|152994670|ref|YP_001339505.1| cytidine deaminase [Marinomonas sp. MWYL1]
gi|150835594|gb|ABR69570.1| cytidine deaminase [Marinomonas sp. MWYL1]
Length = 139
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K A A P S+FHVGA L + GRI+ G NVE P + AE I +++
Sbjct: 10 LFALAKEAMNKAYVPYSRFHVGAAILTAGGRIYSGCNVENAAFP--EGTCAEAGAIASMV 67
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHL 140
L + ++ + V PCG CRQ ++E + I+IC RK ++ L
Sbjct: 68 LGGDTLIKDIFVIGKGEELVTPCGGCRQKIREFSSVDTMIHICGA---EGVRKSLTMNEL 124
Query: 141 LPDRFGPNDL 150
LP FGP +L
Sbjct: 125 LPFSFGPENL 134
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+P E E A EA NK++ PYS+ G AI+ G IY G +E+AA+ P
Sbjct: 1 MPNKEQSAELFALAK-EAMNKAYVPYSRFHVGAAILTAGGRIYSGCNVENAAF-PEGTCA 58
Query: 235 QAALVAYLAAGGS 247
+A +A + GG
Sbjct: 59 EAGAIASMVLGGD 71
>gi|401879434|gb|AFQ30793.1| cytidine deaminase, partial [Cylindrospermopsis raciborskii
CENA302]
Length = 112
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L S+HAEQ N L+ E LQ LA+ APCG+CRQFL E+ + + +
Sbjct: 1 FVGQALSFSVHAEQSATINAWLHGETGLQALAIHEAPCGYCRQFLYEMATVNQNFVLLVK 60
Query: 127 INSN--ERKY--HPLSHLLPDRFGPNDL 150
N + E+ Y + L H LP+ FGP DL
Sbjct: 61 SNESQPEQTYTSNKLPHFLPEPFGPADL 88
>gi|324523653|gb|ADY48279.1| Cytidine deaminase [Ascaris suum]
Length = 142
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A A P SKF VGA L G I GGNVE +I AE+ + I
Sbjct: 13 KKAMERAYCPYSKFQVGAALLTEDGTIITGGNVECASYGC--TICAERSAVVRAIAEGHN 70
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ Q +AV+ A PCG CRQ L E DI + + S SN+R L LLP F
Sbjct: 71 KFQAIAVATACSDPTPPCGICRQLLIEF---GDIPVIMASSTSNKRIELALHELLPVGFV 127
Query: 147 PNDLLD 152
P L D
Sbjct: 128 PKSLDD 133
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K+ L AA +A +++ PYSK G A++ +G I G +E A+Y ++ ++A+V
Sbjct: 5 KDALVEAAKKAMERAYCPYSKFQVGAALLTEDGTIITGGNVECASYGCTICAERSAVVRA 64
Query: 242 LAAG 245
+A G
Sbjct: 65 IAEG 68
>gi|49259414|pdb|1UX0|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Gln
Substitution
gi|49259415|pdb|1UX0|B Chain B, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Gln
Substitution
Length = 136
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AEQ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AEQTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+ Q AL
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEQTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|212541498|ref|XP_002150904.1| cytidine deaminase, putative [Talaromyces marneffei ATCC 18224]
gi|210068203|gb|EEA22295.1| cytidine deaminase, putative [Talaromyces marneffei ATCC 18224]
Length = 420
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS- 100
P SKF VGA + ++G G N+E P+ + AE+ N ++ + +AV+
Sbjct: 309 PYSKFRVGACLITATGEYIFGANIENASYPV--GVCAERVAFGNALMQGHKSFKAIAVAT 366
Query: 101 -----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
A+PCG CRQF++E T I + + E K + LLPD FGP+DL
Sbjct: 367 DIKPGASPCGMCRQFMREF-TTPTFPIYMYDKD-GEYKVATIGELLPDSFGPDDL 419
>gi|23099206|ref|NP_692672.1| cytidine:deoxycytidine deaminase [Oceanobacillus iheyensis HTE831]
gi|22777434|dbj|BAC13707.1| cytidine:deoxycytidine deaminase [Oceanobacillus iheyensis HTE831]
Length = 133
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
QLL +K+ + A P S F VGA L SG+++ G N+E P+ + AE+ I
Sbjct: 5 QLLDASLKAMDS-AYVPYSTFPVGAALLTKSGKLYTGCNIENAAYPV--TCCAERVAIFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
I E + +AV+A PCG CRQ + E TS + I +T++N E K +
Sbjct: 62 AISEGETQFAEMAVAANTKRPVPPCGSCRQVMSEFF-TSSMKIHLTNLNK-EVKTLTIEE 119
Query: 140 LLPDRFGPNDL 150
LLP F P+DL
Sbjct: 120 LLPFSFQPDDL 130
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K +L A+L+A + ++ PYS P G A++ G +Y G +E+AAY
Sbjct: 3 KNQLLDASLKAMDSAYVPYSTFPVGAALLTKSGKLYTGCNIENAAY 48
>gi|206895514|ref|YP_002246847.1| cytidine deaminase [Coprothermobacter proteolyticus DSM 5265]
gi|206738131|gb|ACI17209.1| cytidine deaminase [Coprothermobacter proteolyticus DSM 5265]
Length = 137
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + KSA+ A P S F VGA LG SG+++LG N+E P + ++ + AE+ + + +
Sbjct: 13 LISAAKSARENAVAPFSNFRVGAALLGKSGKVYLGANME-PAV-MNLGLCAERTALFSAL 70
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E + +AV A PCG CRQ +L N+ + E K L +L
Sbjct: 71 AQGEKEFEAIAVYAGTEQPGYPCGGCRQVFSDLAP----NVLWLLVGDKEVKIETLESML 126
Query: 142 PDRFGPNDL 150
P+RF DL
Sbjct: 127 PNRFVLEDL 135
>gi|50550903|ref|XP_502924.1| YALI0D17072p [Yarrowia lipolytica]
gi|49648792|emb|CAG81115.1| YALI0D17072p [Yarrowia lipolytica CLIB122]
Length = 149
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
SA+ + P SKF VGAV L SG G NVE +I AE+ IT I+ +
Sbjct: 17 SARDFSYSPYSKFRVGAVLLTESGEWIQGANVE--NASYGGAICAERVAITRAIMEGHKK 74
Query: 94 LQ------HLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ L+V +PCG CRQF++E ++DI I + + + + LLP FGP
Sbjct: 75 FKAIGVASDLSVVCSPCGICRQFIREW--STDIPIYLFT-KDGKYTMQTIKELLPLSFGP 131
Query: 148 NDLLDKDVPLLLET 161
L + V ET
Sbjct: 132 EHLDTEKVEAETET 145
>gi|345021368|ref|ZP_08784981.1| cytidine:deoxycytidine deaminase [Ornithinibacillus scapharcae
TW25]
Length = 132
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P SKF VGA L SG+++ G N+E P+ S+ AE+ I I + E +A
Sbjct: 17 AYVPYSKFPVGAALLTKSGKVYTGCNIENAAYPV--SLCAERVAIFKAISDGETEFIEMA 74
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V+A PCG CRQ + E +SD+ I +T++++N + + + LLP F D+
Sbjct: 75 VAADTERPVPPCGSCRQVMSEFF-SSDMTIHLTNLHANTKTVN-MEELLPFSFQKTDM 130
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+E +++ PYSK P G A++ G +Y G +E+AAY SL + A+ ++ G +
Sbjct: 10 AIEMRERAYVPYSKFPVGAALLTKSGKVYTGCNIENAAYPVSLCAERVAIFKAISDGET 68
>gi|90419753|ref|ZP_01227662.1| cytidine deaminase [Aurantimonas manganoxydans SI85-9A1]
gi|90335794|gb|EAS49542.1| cytidine deaminase [Aurantimonas manganoxydans SI85-9A1]
Length = 131
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L KSA A P SKF VGA + GRIF G NVE P + AE I +L+
Sbjct: 5 LFALAKSAMRRAHAPYSKFPVGAALRTTDGRIFSGCNVEVVSFP--EGWCAETTAIGHLV 62
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNT-SDINICITSINSNERKYHPLSHL 140
++ R+ +AV A PCG CRQ + E + + +++C R+ + L
Sbjct: 63 MDGGGRIAEVAVVAEKLPLCTPCGGCRQRIAEFADAGTKVHLC--DAEGGVRETVTMGEL 120
Query: 141 LPDRFGPNDL 150
LP F P L
Sbjct: 121 LPRAFDPQSL 130
>gi|378727447|gb|EHY53906.1| cytidine deaminase [Exophiala dermatitidis NIH/UT8656]
Length = 162
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L L TL A+ A P S F VGA L S+G G NVE P+ I AE+ I
Sbjct: 16 LTKLATLAIEAKECAYCPYSNFRVGACVLLSTGTYHTGSNVEVASTPV--GICAERCAIA 73
Query: 85 NLILNAE----PRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSIN--SNER 132
++ + + P ++ +AVS ++PCG CRQF+ E T D+ I + + + +
Sbjct: 74 PIVASLKRPEMPIIRAIAVSTDINPPSSPCGMCRQFINEFATTEDLPIYMLGKDGLAGDV 133
Query: 133 KYHPLSHLLPDRFGPNDLLDKD 154
+ LLP FGP D+ D
Sbjct: 134 VCMTIGELLPCSFGPRDMKRND 155
>gi|335047401|ref|ZP_08540422.1| cytidine deaminase [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761209|gb|EGL38764.1| cytidine deaminase [Parvimonas sp. oral taxon 110 str. F0139]
Length = 131
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+Q A P S F VGA L SG+++ G N+E ++ AE+ I I + E
Sbjct: 13 DSQKKAYTPYSNFKVGACVLTDSGKLYGGCNIE--NASYTPTVCAERVAIFKAIYDGEKM 70
Query: 94 LQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ +AV PCG CRQ ++E ++D I I N E K S +LP FGP
Sbjct: 71 ITKIAVVGKENSLTYPCGVCRQVIREF-CSNDCEIIIIK-NEQEYKIVKFSEILPYSFGP 128
Query: 148 NDL 150
DL
Sbjct: 129 EDL 131
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 180 NPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
N E++ AL++ K++ PYS G ++ G +Y G +E+A+Y P++ + A+
Sbjct: 2 NIYEKMIDCALDSQKKAYTPYSNFKVGACVLTDSGKLYGGCNIENASYTPTVCAERVAIF 61
Query: 240 AYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAAR-LLLQVISPKCE 288
+ G + I A+V KE+++ R ++ + S CE
Sbjct: 62 KAIYDGE--------KMITKIAVVGKENSLTYPCGVCRQVIREFCSNDCE 103
>gi|320040327|gb|EFW22260.1| cytidine deaminase [Coccidioides posadasii str. Silveira]
Length = 140
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L L A+ +A P SKF VGA L G F+G NVE P+ I AE+ +
Sbjct: 11 LATLSAKAIGAKDVAYCPYSKFRVGASLLAEDGTFFVGANVENASYPV--GICAEKCVFG 68
Query: 85 NLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKY--HP 136
+ + +AV++ +PCG CRQF+++ S + N+ KY
Sbjct: 69 TAVTAGHRSFKAVAVASDIIPGTSPCGSCRQFMRQFCPPS----FPVYMYGNDGKYVMKT 124
Query: 137 LSHLLPDRFGPNDL 150
+ LLPD FGP DL
Sbjct: 125 MGELLPDSFGPEDL 138
>gi|421251192|ref|ZP_15707372.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
gi|401698456|gb|EJS90315.1| cytidine deaminase [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
Length = 101
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSG 248
ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L SG
Sbjct: 4 ALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLLL---SG 60
Query: 249 GGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+RIV ++EK + + + A L+ ++ ++
Sbjct: 61 DTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDISLDY 98
>gi|310659079|ref|YP_003936800.1| cytidine deaminase [[Clostridium] sticklandii]
gi|308825857|emb|CBH21895.1| cytidine deaminase [[Clostridium] sticklandii]
Length = 130
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L + A+ A P SKF VGA L +G+++ G NVE AE+ I I
Sbjct: 6 LLELAEQAKENAYVPYSKFKVGAALLTKNGKVYTGCNVEVASFGATNC--AERTAIFKAI 63
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E + +AV+++ PCG CRQ + E + D+ I + S + N K + + LL
Sbjct: 64 SEGETEFEKIAVASSNDDETFPCGICRQVIVEF--SKDLKIILGSTSKNIIKEYTIDDLL 121
Query: 142 PDRFGPNDL 150
P F +DL
Sbjct: 122 PHSFTSDDL 130
>gi|288960152|ref|YP_003450492.1| cytidine deaminase [Azospirillum sp. B510]
gi|288912460|dbj|BAI73948.1| cytidine deaminase [Azospirillum sp. B510]
Length = 146
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA LG SGRIF G NVE P Q AE I ++ + R++ + V
Sbjct: 31 PYSRFKVGAAILGDSGRIFAGCNVENAAYPQGQC--AESSAIGAMVTAGDRRIRAIVVMG 88
Query: 102 A---------PCGHCRQFLQELRN-TSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E + I+IC + R+ L LLP+ FGP +L
Sbjct: 89 GEAGTEEICTPCGGCRQRIREFATPETPIHICDP---AGLRRTFALETLLPESFGPTNL 144
>gi|330994278|ref|ZP_08318206.1| Cytidine deaminase [Gluconacetobacter sp. SXCC-1]
gi|329758745|gb|EGG75261.1| Cytidine deaminase [Gluconacetobacter sp. SXCC-1]
Length = 132
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV-- 99
P S+F VGA GRIF GGNVE P + AE I +++ ++ + V
Sbjct: 20 PYSRFQVGAAVETDDGRIFAGGNVENAAYP--EGTCAEAGAIAAMVMAGGRHIRRVVVCG 77
Query: 100 ----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+ PCG CRQ ++E + + S + R L+ LLPD FGP++L
Sbjct: 78 GGDAACTPCGGCRQKIREF-GAPQTPVTMVSPSGTVRLVRTLAELLPDSFGPDNL 131
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L +A++A +++APYS+ G A+ +G I+ G +E+AAY A+ A + A
Sbjct: 6 LVQSAVDAYGRAYAPYSRFQVGAAVETDDGRIFAGGNVENAAYPEGTCAEAGAIAAMVMA 65
Query: 245 GG 246
GG
Sbjct: 66 GG 67
>gi|386759127|ref|YP_006232343.1| cytidine/deoxycytidine deaminase [Bacillus sp. JS]
gi|384932409|gb|AFI29087.1| cytidine/deoxycytidine deaminase [Bacillus sp. JS]
Length = 136
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVVVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|358374239|dbj|GAA90832.1| cytidine deaminase [Aspergillus kawachii IFO 4308]
Length = 142
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+ L T +A+ A P SKF VGA L SG G NVE P+ AE+
Sbjct: 13 LETLSTKAIAAKDTAYCPYSKFRVGACILTESGEFVQGANVENASYPVGTC--AERVAFG 70
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
N I+ + +AV+ A+PCG CRQF+ E T + I + N +
Sbjct: 71 NAIVAGHRNFKAIAVASDIKPPASPCGMCRQFMSEF-TTPEFPIFMYDGEGN-YTLTTMG 128
Query: 139 HLLPDRFGPNDL 150
LLP+ FGP+D
Sbjct: 129 ELLPNSFGPSDF 140
>gi|383786780|ref|YP_005471349.1| cytidine deaminase [Fervidobacterium pennivorans DSM 9078]
gi|383109627|gb|AFG35230.1| cytidine deaminase, homotetrameric [Fervidobacterium pennivorans
DSM 9078]
Length = 135
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A A P S+FHVGA L SG++++G NVE L AE+ I + + N E
Sbjct: 11 KEAMKNAYAPYSQFHVGAALLTKSGKVYIGANVENASYGLTNC--AERTAIFSAVANGER 68
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
L V A APCG CRQ + E N + +T++ E +S LLP F
Sbjct: 69 EFDTLVVIADTEKPVAPCGACRQVMAEFGN---FKVILTNLKG-EVLETTVSELLPYAFD 124
Query: 147 PNDLLDKD 154
+L KD
Sbjct: 125 KGNLRGKD 132
>gi|290992923|ref|XP_002679083.1| predicted protein [Naegleria gruberi]
gi|284092698|gb|EFC46339.1| predicted protein [Naegleria gruberi]
Length = 129
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
Q +A P SKFHVGA LG G+++ G NVE L +I AE+ + ++ N
Sbjct: 7 DTQKIAYCPYSKFHVGACILGDDGQLYTGCNVENQSYGL--TICAERCAVMKMVSNNCHC 64
Query: 94 LQHLAVSA----APCGHCRQFLQELRN--TSDINICITSINSNERKYHPLSHLLP 142
++ + VS PCG CRQ LQE + T+D + I + +NE + LLP
Sbjct: 65 IKGIVVSTNIGVTPCGACRQVLQEFVDDKTNDFPVLIVNSETNEVLESSMKALLP 119
>gi|443631825|ref|ZP_21116005.1| cytidine deaminase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347940|gb|ELS61997.1| cytidine deaminase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 136
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYKGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K+ L AL+A + ++APYSK G A++ +G +YKG +E+AAY+ + AL
Sbjct: 3 KQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYKGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|296333312|ref|ZP_06875765.1| cytidine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675183|ref|YP_003866855.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350266731|ref|YP_004878038.1| cytidine deaminase [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|296149510|gb|EFG90406.1| cytidine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413427|gb|ADM38546.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|349599618|gb|AEP87406.1| cytidine deaminase [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 136
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K+ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 KQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|16079584|ref|NP_390408.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310454|ref|ZP_03592301.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314777|ref|ZP_03596582.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319700|ref|ZP_03600994.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323977|ref|ZP_03605271.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|321312013|ref|YP_004204300.1| cytidine deaminase [Bacillus subtilis BSn5]
gi|384176154|ref|YP_005557539.1| cytidine deaminase [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|402776793|ref|YP_006630737.1| cytidine/deoxycytidine deaminase [Bacillus subtilis QB928]
gi|418032294|ref|ZP_12670777.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|449095024|ref|YP_007427515.1| cytidine/deoxycytidine deamina [Bacillus subtilis XF-1]
gi|452915077|ref|ZP_21963703.1| cytidine deaminase [Bacillus subtilis MB73/2]
gi|116041|sp|P19079.1|CDD_BACSU RecName: Full=Cytidine deaminase; Short=CDA; AltName: Full=Cytidine
aminohydrolase
gi|20663960|pdb|1JTK|A Chain A, Crystal Structure Of Cytidine Deaminase From Bacillus
Subtilis In Complex With The Inhibitor
Tetrahydrodeoxyuridine
gi|20663961|pdb|1JTK|B Chain B, Crystal Structure Of Cytidine Deaminase From Bacillus
Subtilis In Complex With The Inhibitor
Tetrahydrodeoxyuridine
gi|606744|gb|AAB59993.1| cytidine deaminase [Bacillus subtilis]
gi|1303825|dbj|BAA12481.1| Cdd [Bacillus subtilis]
gi|2634962|emb|CAB14459.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. 168]
gi|6018365|emb|CAB57856.1| cytidine deaminase [Bacillus subtilis]
gi|320018287|gb|ADV93273.1| cytidine deaminase [Bacillus subtilis BSn5]
gi|349595378|gb|AEP91565.1| cytidine deaminase [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|351471157|gb|EHA31278.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481973|gb|AFQ58482.1| Cytidine/deoxycytidine deaminase [Bacillus subtilis QB928]
gi|407959776|dbj|BAM53016.1| cytidine/deoxycytidine deaminase [Bacillus subtilis BEST7613]
gi|407965351|dbj|BAM58590.1| cytidine/deoxycytidine deaminase [Bacillus subtilis BEST7003]
gi|449028939|gb|AGE64178.1| cytidine/deoxycytidine deamina [Bacillus subtilis XF-1]
gi|452115425|gb|EME05821.1| cytidine deaminase [Bacillus subtilis MB73/2]
gi|227058|prf||1613422B cytidine/deoxycitidine deaminase
Length = 136
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|294659692|ref|XP_002770628.1| DEHA2G13046p [Debaryomyces hansenii CBS767]
gi|199434161|emb|CAR65962.1| DEHA2G13046p [Debaryomyces hansenii CBS767]
Length = 149
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
L + +K+A+ A P SKF VG V S+G+ F G NVE I AE+ IT
Sbjct: 17 LRESCLKAARNSAYCPYSKFRVGCVLETSTGKRFTGANVE--NASYGAGICAERATITKA 74
Query: 87 ILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHP--LS 138
+ +L+ +A+S +PCG CRQF++E N+ + NS+ K+ L
Sbjct: 75 VTEGHKKLKLIAISGDSEEPISPCGICRQFIREF----GPNVPVFMFNSDGSKFIKVFLQ 130
Query: 139 HLLPDRFGPNDL 150
LLP FGP +L
Sbjct: 131 DLLPLSFGPENL 142
>gi|312127193|ref|YP_003992067.1| cytidine deaminase [Caldicellulosiruptor hydrothermalis 108]
gi|311777212|gb|ADQ06698.1| cytidine deaminase [Caldicellulosiruptor hydrothermalis 108]
Length = 138
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L K AQ A P S+F VGA +GSS +++ G N+E PL SI AE+ + I
Sbjct: 17 LAKEAQKKAYAPYSRFKVGAAAVGSSRKVYTGCNIENASYPL--SICAERVALFKAISEG 74
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDI---NICITS-INSNERKYHPLSHL 140
E +++ L + +PCG CRQ + EL S I N +T I +N ++ P
Sbjct: 75 ESKIKALYIIGPENEPISPCGACRQVIFELARNSTIYLSNCDMTKVIETNSKELLPYGFD 134
Query: 141 LPDR 144
L +R
Sbjct: 135 LKER 138
>gi|428280019|ref|YP_005561754.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. natto
BEST195]
gi|291484976|dbj|BAI86051.1| cytidine/deoxycytidine deaminase [Bacillus subtilis subsp. natto
BEST195]
Length = 136
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYTPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVED 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++ PYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 RQELITEALKARDMAYTPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|404369530|ref|ZP_10974864.1| cytidine deaminase [Clostridium sp. 7_2_43FAA]
gi|404301772|gb|EEH99724.2| cytidine deaminase [Clostridium sp. 7_2_43FAA]
Length = 139
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+LL AQ A P S FHVGA LG++G+I+LG N+E + AE+
Sbjct: 5 KLLVEKAYEAQKFAYTPYSNFHVGAALLGTNGKIYLGCNIE--NAAFTPTNCAERTAFFK 62
Query: 86 LILNAEPRLQHLAVSA-----------APCGHCRQFLQELRNTSDINICITSINSNERKY 134
+ + Q +A+ APCG CRQ + E + I + N +E K
Sbjct: 63 AVSEGQHEFQAIAIVGNMADAEETEYCAPCGVCRQVIAEFCDPKTFKIYLAK-NKDEFKE 121
Query: 135 HPLSHLLPDRFGPNDL 150
+ L LLP F DL
Sbjct: 122 YTLEELLPLGFTGKDL 137
>gi|302872223|ref|YP_003840859.1| cytidine deaminase [Caldicellulosiruptor obsidiansis OB47]
gi|302575082|gb|ADL42873.1| cytidine deaminase [Caldicellulosiruptor obsidiansis OB47]
Length = 138
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T++ L TL K AQ A P S F VGA +G+S +++ G NVE PL S+ AE+
Sbjct: 10 TIIYFL-TLAKEAQKKAYAPYSCFKVGAAAVGNSSKVYTGCNVENASYPL--SMCAERIA 66
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDI---NICITS-INSNER 132
I I E ++ L + +PCG CRQ + EL S I N +T I +N +
Sbjct: 67 IFKAISEGESEIKALYIIGPENEPISPCGACRQVIFELARNSTIYLSNCDMTKVIETNSK 126
Query: 133 KYHPLSHLLPDR 144
+ P L +R
Sbjct: 127 ELLPYGFDLKER 138
>gi|398306988|ref|ZP_10510574.1| cytidine/deoxycytidine deaminase [Bacillus vallismortis DV1-F-3]
Length = 136
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYVPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVMTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++ PYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 RQELITEALKARDMAYVPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|379737540|ref|YP_005331046.1| cytidine deaminase [Blastococcus saxobsidens DD2]
gi|378785347|emb|CCG05020.1| Cytidine deaminase [Blastococcus saxobsidens DD2]
Length = 139
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L + A T A P S+F VG GL GR+ G NVE L + AE +++
Sbjct: 8 WEALRAAARQAMTRAYAPYSRFPVGVAGLVDDGRVVTGCNVENASYGL--GLCAECGMVS 65
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+L RL +A PCG CRQ L E +D+ I S+ P+
Sbjct: 66 DLARTGGGRLVAVACVGGDGQPLMPCGRCRQLLWE-HGGADMLIETVSLG-----IVPMR 119
Query: 139 HLLPDRFGPNDLL 151
+LPD FGP+DL+
Sbjct: 120 EVLPDAFGPDDLV 132
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L+ AA +A +++APYS+ P GVA + +G + G +E+A+Y L + +V+ L
Sbjct: 9 EALRAAARQAMTRAYAPYSRFPVGVAGLVDDGRVVTGCNVENASYGLGL-CAECGMVSDL 67
Query: 243 AAGGSGGGGGGYERIVAAALV 263
A G G R+VA A V
Sbjct: 68 ARTGGG-------RLVAVACV 81
>gi|359408939|ref|ZP_09201407.1| cytidine deaminase, homotetrameric [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356675692|gb|EHI48045.1| cytidine deaminase, homotetrameric [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 131
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
++L +A A P S F VGA L G + G N+E P Q AE I+
Sbjct: 3 EMLIRAAIAAMDKAYSPYSGFSVGAAILDEHGAVHTGANIENAAYP--QGCCAEASAISA 60
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
LI++ R+Q +AV+ PCG CRQ ++E T++ I + + R+ L
Sbjct: 61 LIMSGGQRIQKIAVAGRGEILCTPCGGCRQKIREF-GTAETQILVCD-ETGLRQSFTLDE 118
Query: 140 LLPDRFGPNDL 150
LLP FGP++L
Sbjct: 119 LLPHSFGPDNL 129
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L AA+ A +K+++PYS G AI+D G ++ G+ +E+AAY +A+ A +
Sbjct: 3 EMLIRAAIAAMDKAYSPYSGFSVGAAILDEHGAVHTGANIENAAYPQGCCAEASAISALI 62
Query: 243 AAGG 246
+GG
Sbjct: 63 MSGG 66
>gi|390454138|ref|ZP_10239666.1| cytidine deaminase [Paenibacillus peoriae KCTC 3763]
Length = 131
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA LGS G I+ G NVE L AE+ I ++ ++
Sbjct: 12 ARKQAYIPYSNFQVGAAVLGSDGTIYSGCNVENASYGLCNC--AERTAIFKMVSEGCRKI 69
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+AV A +PCG CRQ + E + SD I +T+++ N ++ + LLP F P+
Sbjct: 70 DAIAVVADTEGPVSPCGACRQVISEFAH-SDTKIYLTNLHGNTEEW-TMEKLLPGAFRPS 127
Query: 149 DL 150
DL
Sbjct: 128 DL 129
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K++L ALEA +++ PYS G A++ +G IY G +E+A+Y
Sbjct: 2 KDQLIQEALEARKQAYIPYSNFQVGAAVLGSDGTIYSGCNVENASY 47
>gi|49259412|pdb|1UWZ|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Ala
Substitution
gi|49259413|pdb|1UWZ|B Chain B, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Ala
Substitution
Length = 136
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AEATALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K +
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQ-GQIKEMTVEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYS 49
>gi|317159329|ref|XP_003191056.1| cytidine deaminase [Aspergillus oryzae RIB40]
Length = 148
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 17 AQKSGLTV--LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
+ K LT LQ L + +A+ A P SKF VGA L SG +G NVE P+
Sbjct: 3 SSKPSLTTQELQTLASKAIAAKATAYCPYSKFRVGACILTQSGEYIVGANVENASYPVGT 62
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSIN 128
AE+ ++ + +AV+ A+PCG CRQF+ E T I +
Sbjct: 63 C--AERVAFGTAVVAGYHDFKAVAVATDSNPPASPCGMCRQFMNEF-TTPSFPI---YMY 116
Query: 129 SNERKY--HPLSHLLPDRFGPNDLLDKDV 155
+E Y + LLPD FGP D + V
Sbjct: 117 GSEGTYTIKTMRELLPDSFGPEDFSKERV 145
>gi|442805480|ref|YP_007373629.1| cytidine deaminase Cdd [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741330|gb|AGC69019.1| cytidine deaminase Cdd [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 139
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA +SGR++ G NVE +I AE+ I + E ++
Sbjct: 13 AKEKAYAPYSGFRVGAAVQTASGRVYTGCNVE--NSSFGATICAERTAIAKAVSEGESKI 70
Query: 95 QHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+AVS+ PCG CRQ + E N IC S + + K + + +LP F
Sbjct: 71 VAVAVSSDGENITYPCGICRQVISEFGNDETKVIC--SNKNGQYKIYEMKDILPHAFAGE 128
Query: 149 DLLDKD 154
D + K+
Sbjct: 129 DFMTKN 134
>gi|448530743|ref|XP_003870135.1| Cdd1 protein [Candida orthopsilosis Co 90-125]
gi|380354489|emb|CCG24004.1| Cdd1 protein [Candida orthopsilosis]
Length = 148
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L LV A++L+ P SKF V + L SG G NVE I AE+ I+ +
Sbjct: 20 LRDLVTEAKSLSYCPYSKFRVASCVLTESGDFITGVNVE--NASYGAGICAERAAISRAV 77
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ + +A++A PCG CRQF++E DI + + S S+ K + L LL
Sbjct: 78 SQGHRKFRAIAIAADTPKPIVPCGICRQFMREF--NEDIVLFLFSKESDHIKVY-LKDLL 134
Query: 142 PDRFGPNDL 150
P FGP DL
Sbjct: 135 PLSFGPEDL 143
>gi|121534216|ref|ZP_01666041.1| cytidine deaminase [Thermosinus carboxydivorans Nor1]
gi|121307319|gb|EAX48236.1| cytidine deaminase [Thermosinus carboxydivorans Nor1]
Length = 131
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ LA P S+F VGA L SGR++ G NVE L +I AE+ I + E
Sbjct: 9 QKARELAYTPYSRFQVGAALLTKSGRVYTGCNVENASYSL--TICAERTAIFKAVSEGER 66
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A APCG CRQ + E IN I +R+ L LLP F
Sbjct: 67 DFIALAVVANAPEPLAPCGACRQVMVEFA----INRVILCNTDGQRRELTLDELLPYAFN 122
Query: 147 PNDLLDKD 154
L+ D
Sbjct: 123 ERFLIGDD 130
>gi|392862251|gb|EAS37117.2| cytidine deaminase [Coccidioides immitis RS]
Length = 185
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ +A P SKF VGA L G F+G NVE P+ I AE+ + +
Sbjct: 66 AKDVAYCPYSKFRVGASLLAEDGTFFVGANVENASYPV--GICAEKCVFGTAVTAGHRSF 123
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKY--HPLSHLLPDRFG 146
+ +AV++ +PCG CRQF+++ S + N+ KY + LLPD FG
Sbjct: 124 KAVAVASDIIPGTSPCGSCRQFMRQFCPPS----FPVYMYGNDGKYVMKTMGELLPDSFG 179
Query: 147 PNDL 150
P DL
Sbjct: 180 PEDL 183
>gi|162148746|ref|YP_001603207.1| cytidine deaminase [Gluconacetobacter diazotrophicus PAl 5]
gi|209545488|ref|YP_002277717.1| cytidine deaminase [Gluconacetobacter diazotrophicus PAl 5]
gi|161787323|emb|CAP56917.1| putative cytidine deaminase [Gluconacetobacter diazotrophicus PAl
5]
gi|209533165|gb|ACI53102.1| cytidine deaminase [Gluconacetobacter diazotrophicus PAl 5]
Length = 132
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+FHVGA + GRIF+G N E P + I AE I ++ ++ + +S
Sbjct: 20 PYSRFHVGAALRCADGRIFVGCNTENAAYP--EGICAEGGAIAAMVAGGGRQIADIVISG 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
APCG CRQ ++E + + + + L+ LLPD FGP DL
Sbjct: 78 GGDRACAPCGGCRQKIREF-SAPGLTVRMVGPQGTPLLVRSLAELLPDAFGPEDL 131
>gi|253761672|ref|XP_002489211.1| hypothetical protein SORBIDRAFT_0012s008010 [Sorghum bicolor]
gi|241947071|gb|EES20216.1| hypothetical protein SORBIDRAFT_0012s008010 [Sorghum bicolor]
Length = 185
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
S AR PIS F VGAVGLG+SGR+++G +VEF G+PL S+HAEQFL
Sbjct: 38 SPLPFARVPISVFRVGAVGLGASGRVYVGVSVEFHGVPLCHSVHAEQFL 86
>gi|312622014|ref|YP_004023627.1| cytidine deaminase [Caldicellulosiruptor kronotskyensis 2002]
gi|312202481|gb|ADQ45808.1| cytidine deaminase [Caldicellulosiruptor kronotskyensis 2002]
Length = 138
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L K AQ A P S+F VGA +GSSG+++ G N+E PL S+ AE+ + I
Sbjct: 17 LAKEAQEKAYAPYSRFRVGAAIVGSSGKVYTGCNIENASYPL--SMCAERVALFKAISEG 74
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDI---NICITS-INSNERKYHPLSHL 140
E +++ L + +PCG CRQ + EL S I N +T I +N ++ P
Sbjct: 75 ETKIKALYIIGPENEPISPCGACRQVVFELAKDSTIYLSNYDMTKVIETNIKELLPYGFE 134
Query: 141 LPDR 144
L +R
Sbjct: 135 LQER 138
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A EA K++APYS+ G AI+ G +Y G +E+A+Y S+ + AL ++ G
Sbjct: 18 AKEAQEKAYAPYSRFRVGAAIVGSSGKVYTGCNIENASYPLSMCAERVALFKAISEG 74
>gi|300797321|ref|NP_001180039.1| cytidine deaminase [Bos taurus]
gi|296490082|tpg|DAA32195.1| TPA: cytidine deaminase-like [Bos taurus]
gi|440897817|gb|ELR49429.1| Cytidine deaminase [Bos grunniens mutus]
Length = 146
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S+F VGA L GRIF G N+E PL S+ AE+ I
Sbjct: 15 VQRLLLSCQEAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--SVCAERTAIQ 72
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+++ +PCG CRQ ++E +D + +T ++ +
Sbjct: 73 KAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREF--GTDWAVYMTKLDGT-YVVRTV 129
Query: 138 SHLLPDRFGPNDL 150
LLP+ FGP DL
Sbjct: 130 RELLPESFGPEDL 142
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+RL + EA ++ PYS+ P G A++ +G I+ G +E+A Y S+ + A+ +
Sbjct: 16 QRLLLSCQEAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLSVCAERTAIQKAI 75
Query: 243 AAG 245
+ G
Sbjct: 76 SEG 78
>gi|225690562|ref|NP_001139516.1| cytidine deaminase [Gallus gallus]
Length = 191
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 17 AQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSI 76
A G LQLL + A+ A P S+F VGA + + G IF G NVE L +
Sbjct: 54 AGMEGSECLQLLLRRCREAKDCAYCPYSRFPVGAAVVTAGGEIFSGCNVENACYSL--GV 111
Query: 77 HAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSN 130
AE+ I I R + +A+++ PCG CRQ ++E +D ++ +T +
Sbjct: 112 CAERIAIQKAISEGHTRFRAMAIASDMSDFITPCGACRQVMREF--GTDWDLYLTKPDGT 169
Query: 131 ERKYHPLSHLLPDRFGPNDL 150
L LLP FGP DL
Sbjct: 170 Y-IVKTLQELLPLSFGPEDL 188
>gi|282882551|ref|ZP_06291172.1| cytidine deaminase [Peptoniphilus lacrimalis 315-B]
gi|300813839|ref|ZP_07094144.1| cytidine deaminase [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297693|gb|EFA90168.1| cytidine deaminase [Peptoniphilus lacrimalis 315-B]
gi|300512026|gb|EFK39221.1| cytidine deaminase [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 132
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ +K+ T+ P S ++VGA G ++ GGN+E L AE+ I
Sbjct: 5 KLIELAIKARDTMTYTPYSHYNVGAAVEMEDGSVYCGGNIENASLTPTNC--AERTAIFK 62
Query: 86 LILNAEPRLQHLAV-----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ + + ++ +AV PCG CRQ ++E I I + + + + H + +
Sbjct: 63 AVSDGKREIKKIAVVGDSHYTYPCGVCRQVIKEFSKNPRI---IVANSLTDYRVHTMDEI 119
Query: 141 LPDRFGPNDLLDK 153
LP FGP DL DK
Sbjct: 120 LPFAFGPEDLEDK 132
>gi|398311472|ref|ZP_10514946.1| cytidine/deoxycytidine deaminase [Bacillus mojavensis RO-H-1]
Length = 136
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYAPYSKFKVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + Q LAV+A +PCG CRQ + EL T D+ + +T++ + K
Sbjct: 62 AVSEGDTEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVVVVLTNLQ-GQIKEMTAEE 119
Query: 140 LLPDRFGPNDLLDK 153
LLP F DL D+
Sbjct: 120 LLPGAFSSEDLHDE 133
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 RQELITEALKARDMAYAPYSKFKVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|336452215|ref|ZP_08622645.1| cytidine deaminase, homotetrameric [Idiomarina sp. A28L]
gi|336280914|gb|EGN74201.1| cytidine deaminase, homotetrameric [Idiomarina sp. A28L]
Length = 141
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M+ L+ Q+L T VK+AQ A P SKF VGA G +G IF G NVE P +
Sbjct: 1 MSSTKALSETQML-TAVKAAQAKAYAPYSKFPVGAAIAGPNGEIFSGCNVENASYP--EG 57
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNT-SDINICITSIN 128
AE I +++ ++ + V +PCG CRQ ++E + + ++IC
Sbjct: 58 NCAETSAIAAMVMAGVTQIDEIYVIGNGDGLVSPCGGCRQRIREFAHANTTVHICGP--- 114
Query: 129 SNERKYHPLSHLLPDRFGPNDLL 151
R LLP+ FGP +L
Sbjct: 115 EGVRAVIAFHELLPNSFGPEHVL 137
>gi|226311652|ref|YP_002771546.1| cytidine deaminase [Brevibacillus brevis NBRC 100599]
gi|226094600|dbj|BAH43042.1| cytidine deaminase [Brevibacillus brevis NBRC 100599]
Length = 132
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ LA P SKF VGA L SG+++LGGN+E L AE+ + +
Sbjct: 13 ARKLAYVPYSKFQVGAALLAESGKVYLGGNIENAAYSLCNC--AERTALFKAYSEGDRTY 70
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ LAV+A +PCG CRQ + EL SD+ + +T++ + + +S LLP F
Sbjct: 71 KALAVAADTPQAVSPCGACRQVIAEL-CPSDMPVFLTNLKGDIWE-TTVSALLPGAFTKE 128
Query: 149 DL 150
DL
Sbjct: 129 DL 130
>gi|332141267|ref|YP_004427005.1| Cytidine deaminase [Alteromonas macleodii str. 'Deep ecotype']
gi|410861660|ref|YP_006976894.1| cytidine deaminase [Alteromonas macleodii AltDE1]
gi|327551289|gb|AEA98007.1| Cytidine deaminase [Alteromonas macleodii str. 'Deep ecotype']
gi|410818922|gb|AFV85539.1| Cytidine deaminase [Alteromonas macleodii AltDE1]
Length = 135
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++ L L AQ + P S F VGA L SG F G NVE PL Q AE I
Sbjct: 6 IEKLSQLAFDAQKNSHSPYSNFKVGAAVLTPSGETFAGCNVESAAFPLGQC--AEATAIG 63
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
N++ + R+ H+ +++ PCG CRQ + E D S E+ +
Sbjct: 64 NMVTQGQKRITHIVIASPNNEFCFPCGGCRQKIAEF--APDETPVTMVSQSGEKFETTIG 121
Query: 139 HLLPDRFGPNDL 150
LLP+ F +DL
Sbjct: 122 ELLPNAFRAHDL 133
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
+N E+L A +A SH+PYS G A++ G + G +ESAA+
Sbjct: 3 KNNIEKLSQLAFDAQKNSHSPYSNFKVGAAVLTPSGETFAGCNVESAAF 51
>gi|262039432|ref|ZP_06012738.1| cytidine deaminase [Leptotrichia goodfellowii F0264]
gi|261746544|gb|EEY34077.1| cytidine deaminase [Leptotrichia goodfellowii F0264]
Length = 142
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 14 ESMAQKSGLTVLQLLPTLVKSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLP 71
+ +A K LT ++ + ++ +TL R P SKF V A+ + +G+ F G NVE
Sbjct: 2 KELAGKIKLTEKEISDYIDEANETLDRAYVPYSKFPVAALLIDQNGKKFKGVNVENASYG 61
Query: 72 LHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICIT 125
+ I AE+ +I + +++ L V+ +PCG CRQF+ E SD + I
Sbjct: 62 V--GICAERNVIPTAVTEGMKKIKLLVVTGGTPEPISPCGACRQFISEF---SDKDTVII 116
Query: 126 SINSNER-KYHPLSHLLPDRFGPNDL 150
N +++ K + LLP FGP DL
Sbjct: 117 LTNRDKKYKIWSIDELLPYSFGPEDL 142
>gi|309790517|ref|ZP_07685075.1| cytidine deaminase [Oscillochloris trichoides DG-6]
gi|308227433|gb|EFO81103.1| cytidine deaminase [Oscillochloris trichoides DG6]
Length = 108
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 48 VGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV------SA 101
+GA L +SGRIFLGGN+E P+ +I AE+ + + AE + LAV A
Sbjct: 1 MGAAVLSASGRIFLGGNIENAAYPM--TICAERVALFSAYAAAEREIVALAVVTPTTDVA 58
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKD 154
+PCG CRQ + EL + I + ++ ER P LLP FGP L + D
Sbjct: 59 SPCGACRQVIAELAPRA--TILLLNMEGVERIVTP-QDLLPFGFGPRQLTEVD 108
>gi|375310473|ref|ZP_09775744.1| cytidine deaminase [Paenibacillus sp. Aloe-11]
gi|375077622|gb|EHS55859.1| cytidine deaminase [Paenibacillus sp. Aloe-11]
Length = 131
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA LGS G I+ G NVE L AE+ I ++ ++
Sbjct: 12 ARKQAYIPYSNFQVGAAVLGSDGTIYSGCNVENASYGLCNC--AERTAIFKMVSEGCRKI 69
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+AV A +PCG CRQ + E + SD I +T+++ N ++ + LLP F P
Sbjct: 70 DAIAVVADTEGPVSPCGACRQVISEFAH-SDTKIYLTNLHGNTEEW-TMEKLLPGAFRPA 127
Query: 149 DL 150
DL
Sbjct: 128 DL 129
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K++L ALEA +++ PYS G A++ +G IY G +E+A+Y
Sbjct: 2 KDQLIQEALEARKQAYIPYSNFQVGAAVLGSDGTIYSGCNVENASY 47
>gi|269795855|ref|YP_003315310.1| cytidine deaminase [Sanguibacter keddieii DSM 10542]
gi|269098040|gb|ACZ22476.1| cytidine deaminase [Sanguibacter keddieii DSM 10542]
Length = 136
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T + T A P S+F VGA L GR+ G NVE + + AE L+++L+
Sbjct: 10 LRTAARDIMTKAYAPYSEFPVGAAALVDDGRVVTGCNVENAAYGV--VLCAECGLVSSLV 67
Query: 88 LNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ RL + PCG CRQ L E S + R P+S +L
Sbjct: 68 ASGGGRLVAFTCVDGHGNTLMPCGRCRQLLWEHGGPS-------LLVETTRGIVPMSEVL 120
Query: 142 PDRFGPNDLLDK 153
PD FGP+DL+ +
Sbjct: 121 PDAFGPDDLVTR 132
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ L+ AA + K++APYS+ P G A + +G + G +E+AAY L + LV+ L
Sbjct: 8 DGLRTAARDIMTKAYAPYSEFPVGAAALVDDGRVVTGCNVENAAYGVVL-CAECGLVSSL 66
Query: 243 AAGGSG 248
A G G
Sbjct: 67 VASGGG 72
>gi|71726731|gb|AAZ39529.1| cytidine deaminase [Biomphalaria glabrata]
Length = 139
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 15/137 (10%)
Query: 30 TLVKS---AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
+LVK+ A+ A P SKF VGA L G++F G NVE + +I AE+ +
Sbjct: 6 SLVKASHEAKLKAYCPYSKFQVGAAVLTEDGKVFTGCNVE--NVSYSLTICAERSALVKA 63
Query: 87 ILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ R + +AV++ +PCG CRQFL E D ++ +T + K P
Sbjct: 64 VSEGHTRFKAIAVASNMPDKYISPCGACRQFLLEFGK--DYDVYMTKPDHTFIKSSP-GE 120
Query: 140 LLPDRFGPNDLLDKDVP 156
LLP F P DL+ + P
Sbjct: 121 LLPHGFTPLDLMSFEKP 137
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L A+ EA K++ PYSK G A++ +G ++ G +E+ +Y+ ++ ++ALV +
Sbjct: 5 ESLVKASHEAKLKAYCPYSKFQVGAAVLTEDGKVFTGCNVENVSYSLTICAERSALVKAV 64
Query: 243 AAG 245
+ G
Sbjct: 65 SEG 67
>gi|405952956|gb|EKC20701.1| Cytidine deaminase, partial [Crassostrea gigas]
Length = 130
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 31 LVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
LVK+A + A P S FHVGA L SS +IF G NVE L + AE+ ITN +
Sbjct: 1 LVKAAVEVKDKAYCPYSNFHVGAAVLTSSNQIFTGVNVENASYGL--CVCAERVAITNAV 58
Query: 88 LNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
L+ +AV APCG CRQ + E D + S + K+ + L
Sbjct: 59 SQGHRELKAMAVCCDIKDSFKAPCGACRQVVAEFNLDMDYYMVKPDYTSKKIKF---AEL 115
Query: 141 LPDRFGPNDLLDKDV 155
LP F P L ++ V
Sbjct: 116 LPMAFTPASLKEERV 130
>gi|226288225|gb|EEH43737.1| cytidine deaminase [Paracoccidioides brasiliensis Pb18]
Length = 139
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M T LQ L + +A+ A P SKF VGA L G +G NVE P+
Sbjct: 1 MPSAVSTTELQTLSSKAIAAKEAAYCPYSKFRVGACLLTEEGEFVVGANVENVSYPV--G 58
Query: 76 IHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINS 129
+ AE+ ++ + +AV+ A+PCG CRQF++E S +
Sbjct: 59 VCAERCAFGTAVVAGHKSFKAIAVATDISPGASPCGMCRQFMREFCTQSF----PVYMYG 114
Query: 130 NERKY--HPLSHLLPDRFGPNDL 150
+ KY + LLP+ FGP++L
Sbjct: 115 KDGKYVMKTMGELLPNSFGPDEL 137
>gi|295672393|ref|XP_002796743.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283723|gb|EEH39289.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 139
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M T LQ L + +A+ A P SKF VGA L G +G NVE P+
Sbjct: 1 MPSAVSTTELQTLSSKAIAAKETAYCPYSKFRVGACLLTEEGEFVVGANVENVSYPV--G 58
Query: 76 IHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINS 129
+ AE+ ++ + +AV+ A+PCG CRQF++E S +
Sbjct: 59 VCAERCAFGTAVVAGHKSFKAIAVATDISPGASPCGMCRQFMREFCTQSF----PVYMYG 114
Query: 130 NERKY--HPLSHLLPDRFGPNDL 150
+ KY + LLP+ FGP++L
Sbjct: 115 KDGKYIMKTMGELLPNSFGPDEL 137
>gi|217077829|ref|YP_002335547.1| cdd cytidine deaminase [Thermosipho africanus TCF52B]
gi|217037684|gb|ACJ76206.1| cdd cytidine deaminase [Thermosipho africanus TCF52B]
Length = 129
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K AQ A P S F VGA L SG+IF G NVE L S AE+ I +
Sbjct: 5 LIELAKKAQKNAYAPYSNFKVGAAILTKSGKIFTGANVENASYGL--SCCAERNAIFKAV 62
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E + + V +PCG CRQ + E D + + N N +K +S LL
Sbjct: 63 SEGETQFSKIVVVGDTEEPISPCGACRQVMAEF---GDFEVILVGKNGNIKK-TTVSELL 118
Query: 142 PDRFGPNDL 150
P F +L
Sbjct: 119 PYNFDKENL 127
>gi|89895852|ref|YP_519339.1| hypothetical protein DSY3106 [Desulfitobacterium hafniense Y51]
gi|219670282|ref|YP_002460717.1| cytidine deaminase [Desulfitobacterium hafniense DCB-2]
gi|423076638|ref|ZP_17065346.1| cytidine deaminase [Desulfitobacterium hafniense DP7]
gi|89335300|dbj|BAE84895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540542|gb|ACL22281.1| cytidine deaminase [Desulfitobacterium hafniense DCB-2]
gi|361852443|gb|EHL04703.1| cytidine deaminase [Desulfitobacterium hafniense DP7]
Length = 139
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 26 QLLPTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
+L+ L++ AQ A P S + VGA L SGRI G NVE L +I AE+
Sbjct: 10 ELIEELIRRAQKAYQSAYVPYSNYPVGAATLWESGRIIAGCNVENASYGL--TICAERNA 67
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + + E RL+ +AV+ +PCG CRQ L+E S + I + K
Sbjct: 68 VFHSAYHGERRLKAVAVAVPTDAFPSPCGACRQVLREF---SQDCLVILVNGKGQTKMTR 124
Query: 137 LSHLLPDRFGPNDL 150
LS LLPD FGP L
Sbjct: 125 LSVLLPDSFGPEFL 138
>gi|374308715|ref|YP_005055146.1| cytidine deaminase [Filifactor alocis ATCC 35896]
gi|291167046|gb|EFE29092.1| cytidine deaminase [Filifactor alocis ATCC 35896]
Length = 137
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
++L K A+ + P S F VGA L G+++LG N+E + AE+
Sbjct: 4 EMLLKEAKKARECSYSPYSNFQVGAALLTKGGKVYLGCNIE--NASYTPTNCAERTAFFK 61
Query: 86 LILNAEPRLQHLAVSA-----------APCGHCRQFLQELRNTSDINICITSINSNERKY 134
I + E +AV PCG CRQ + E N I ++ N + Y
Sbjct: 62 AICDGEREFTKIAVVGGKKGEDAKQICTPCGVCRQVMMEFCNPETFQIVLSDGNDGCQSY 121
Query: 135 HPLSHLLPDRFGPNDL 150
L LLP FGPNDL
Sbjct: 122 L-LKELLPMGFGPNDL 136
>gi|392407809|ref|YP_006444417.1| cytidine deaminase [Anaerobaculum mobile DSM 13181]
gi|390620945|gb|AFM22092.1| cytidine deaminase [Anaerobaculum mobile DSM 13181]
Length = 128
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L L K A+ A P S F VGA LG SG I+LG NVE L ++ AE+ +
Sbjct: 6 QELFALAKEARESAYAPYSDFKVGAALLGESGTIYLGCNVENASFGL--TVCAERVALFK 63
Query: 86 LILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ E + +A+ A PCG C Q + E D++I + + K+ +S L
Sbjct: 64 AVSEGERVFKAIAIYAGSKSVPPCGACLQVMAEF---GDLDILLFDSKGSYVKWR-ISEL 119
Query: 141 LPDRFGPND 149
LP F ND
Sbjct: 120 LPQAFRLND 128
>gi|312793108|ref|YP_004026031.1| cytidine deaminase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180248|gb|ADQ40418.1| cytidine deaminase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 138
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L K AQ A P S+F VGA +GSS +++ G N+E PL S+ AE+ + I
Sbjct: 17 LAKEAQEKAYAPYSRFRVGAAAVGSSSKVYTGCNIENASYPL--SMCAERVALFKAISEG 74
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDINIC----ITSINSNERKYHPLSHL 140
E ++ L + +PCG CRQ + EL S I + I +N ++ P
Sbjct: 75 ESEIKALYIIGPENEPISPCGACRQVIFELAKDSTIYLSNRDMTKVIETNSKELLPYGFD 134
Query: 141 LPDR 144
L +R
Sbjct: 135 LKER 138
>gi|326793834|ref|YP_004311654.1| cytidine deaminase [Marinomonas mediterranea MMB-1]
gi|326544598|gb|ADZ89818.1| cytidine deaminase [Marinomonas mediterranea MMB-1]
Length = 136
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L SA A P S F VGA SG +F G NVE P + AE I++++
Sbjct: 10 LLALAHSAMDNAYVPYSNFRVGAAIETESGEVFSGCNVENASYP--EGTCAEAGAISSMV 67
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNT-SDINICITSINSNERKYHPLSHL 140
E +++H+ V PCG CRQ ++E ++I+IC RK ++ L
Sbjct: 68 RAGESKIRHIYVMGMGDELVTPCGGCRQRIREFATAETEIHICSP---DGVRKTFLMNDL 124
Query: 141 LPDRFGPNDL 150
LP FGP++L
Sbjct: 125 LPFSFGPDNL 134
>gi|317128318|ref|YP_004094600.1| cytidine deaminase [Bacillus cellulosilyticus DSM 2522]
gi|315473266|gb|ADU29869.1| cytidine deaminase [Bacillus cellulosilyticus DSM 2522]
Length = 132
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ A P SKF VGA L + ++F G N+E + AE+ I +
Sbjct: 11 KKARERAYAPYSKFKVGAALLSDNDKVFHGCNIENAAYSMCNC--AERTAIFKAVSEGVR 68
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ LAV A +PCG CRQ + EL + D+ I +T++N + ++ + LLP F
Sbjct: 69 HFKALAVVADTEGPVSPCGACRQVISELL-SKDVKIILTNLNGDIAEW-TVKDLLPGAFA 126
Query: 147 PNDL 150
P DL
Sbjct: 127 PQDL 130
>gi|110645436|gb|AAI18901.1| cytidine deaminase [Xenopus (Silurana) tropicalis]
Length = 151
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
++Q L A+ A P SKF VGA L + G++ LG NVE L I AE+ I
Sbjct: 20 LIQRLVAQSHEAKQRAHCPYSKFRVGAALLTADGKVILGCNVENACYAL--GICAERTAI 77
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + +AV++ PCG CRQ ++E DI + + S
Sbjct: 78 QKAVSEGYKEFRAIAVASDVETEFITPCGACRQVMREFGAEWDIYL---TKPSGTYTRTT 134
Query: 137 LSHLLPDRFGPNDLL 151
L LLP FGP DLL
Sbjct: 135 LRQLLPMSFGPEDLL 149
>gi|397691453|ref|YP_006528707.1| Cytidine deaminase [Melioribacter roseus P3M]
gi|395812945|gb|AFN75694.1| Cytidine deaminase [Melioribacter roseus P3M]
Length = 135
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
QL+ V++A+ A P S FHVGA + SG+I+LG N+E L +I AE+
Sbjct: 9 QLISKAVEAARK-AYAPYSNFHVGAALITKSGKIYLGANIENSSYGL--TICAERTAAFR 65
Query: 86 LILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+L E +A+ + PCG CRQ L EL D+++ I + E K L
Sbjct: 66 AVLEGEKEFDAIAIVSDSEDFTPPCGACRQVLSELCG-KDLSV-IMNNKKGEIKEMTLEE 123
Query: 140 LLPDRFGPNDL 150
LLP F +L
Sbjct: 124 LLPFSFDKENL 134
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
KE+L A+EAA K++APYS G A++ G IY G+ +E+++Y ++
Sbjct: 7 KEQLISKAVEAARKAYAPYSNFHVGAALITKSGKIYLGANIENSSYGLTI 56
>gi|374320525|ref|YP_005073654.1| cytidine deaminase [Paenibacillus terrae HPL-003]
gi|357199534|gb|AET57431.1| cytidine deaminase [Paenibacillus terrae HPL-003]
Length = 131
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA LGS G I+ G NVE L AE+ I ++ ++
Sbjct: 12 ARKQAYIPYSNFQVGAAVLGSDGTIYRGCNVENASYGLCNC--AERTAIFKMVSEGCRKI 69
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+A+ A +PCG CRQ + E +T D + +T+++ N ++ + LLP F P
Sbjct: 70 DAIAIVADTEGPVSPCGACRQVISEFAHT-DTKVYLTNLHGNTEEW-TVDQLLPGAFRPA 127
Query: 149 DL 150
DL
Sbjct: 128 DL 129
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K++L ALEA +++ PYS G A++ +G IY+G +E+A+Y
Sbjct: 2 KDQLIQEALEARKQAYIPYSNFQVGAAVLGSDGTIYRGCNVENASY 47
>gi|407687680|ref|YP_006802853.1| Cytidine deaminase [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407291060|gb|AFT95372.1| Cytidine deaminase [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 157
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+ L L +AQ + P S F VGA L SG F G NVE PL Q AE I
Sbjct: 28 LEQLSQLAFNAQKNSHSPYSNFKVGAAVLTPSGETFSGCNVESAAFPLGQC--AEATAIG 85
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYH-PL 137
N++ + R+ H+ +++ PCG CRQ + E + +T ++ N + +
Sbjct: 86 NMVTQGQKRISHIVIASPNDEFCFPCGGCRQKIAEF---APDETPVTMVSQNGETFETTI 142
Query: 138 SHLLPDRFGPNDL 150
LLP+ F +DL
Sbjct: 143 GELLPNAFRAHDL 155
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
Q+ +N E+L A A SH+PYS G A++ G + G +ESAA+
Sbjct: 20 QVAMKKNNLEQLSQLAFNAQKNSHSPYSNFKVGAAVLTPSGETFSGCNVESAAF 73
>gi|310644092|ref|YP_003948850.1| cytidine deaminase, cdd [Paenibacillus polymyxa SC2]
gi|309249042|gb|ADO58609.1| Cytidine deaminase, cdd [Paenibacillus polymyxa SC2]
gi|392304800|emb|CCI71163.1| cytidine deaminase [Paenibacillus polymyxa M1]
Length = 131
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA LGS G ++ G NVE L AE+ I ++ ++
Sbjct: 12 ARKQAYVPYSNFQVGAAVLGSDGTVYHGCNVENASYGLCNC--AERTAIFKMVSEGCRKI 69
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+AV+A +PCG CRQ + E + D I +T+++ N ++ + LLP F P
Sbjct: 70 DSIAVAADTEGPVSPCGACRQVISEFAH-QDTKIYLTNLHGNTEEW-TMEQLLPGAFRPA 127
Query: 149 DL 150
DL
Sbjct: 128 DL 129
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K++L ALEA +++ PYS G A++ +G +Y G +E+A+Y
Sbjct: 2 KDQLIQKALEARKQAYVPYSNFQVGAAVLGSDGTVYHGCNVENASY 47
>gi|384146010|ref|YP_005528826.1| cytidine deaminase [Amycolatopsis mediterranei S699]
gi|340524164|gb|AEK39369.1| cytidine deaminase [Amycolatopsis mediterranei S699]
Length = 126
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A + A P S HVG G+ GR+ G NVE L + AE + L L+ RL
Sbjct: 13 AASHAYAPYSGLHVGVAGIVDDGRVVTGCNVENASYGL--GLCAECTMAGQLRLSGGGRL 70
Query: 95 QHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+A + PCG CRQ L EL +S C+ S P+S +LPD FGP+
Sbjct: 71 VAVACRSGAGDLLMPCGRCRQILFELGGSS----CLVDTPSG---ILPMSDVLPDAFGPD 123
Query: 149 DL 150
DL
Sbjct: 124 DL 125
>gi|431794886|ref|YP_007221791.1| cytidine deaminase [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785112|gb|AGA70395.1| cytidine deaminase [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 139
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 28 LPTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ TL+ AQ A P S + VGA L SGRI G NVE L ++ AE+ +
Sbjct: 12 IETLIHEAQEAYKNAYVPYSHYPVGAATLWESGRIVSGCNVENASFGL--TLCAERNAVF 69
Query: 85 NLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + E RL+ +A++ +PCG CRQ L+E S + I + K+ LS
Sbjct: 70 HATFHGERRLKAVAIAVPTDAFPSPCGACRQVLREF---SRDCLVILVNEKGQTKFTRLS 126
Query: 139 HLLPDRFGPNDL 150
LLPD FGP L
Sbjct: 127 VLLPDSFGPEFL 138
>gi|328864897|gb|EGG13283.1| cytidine deaminase [Dictyostelium fasciculatum]
Length = 141
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
A+T A P S F VGA LG G+I+ G NVE L +I AE+ T + +
Sbjct: 16 DAKTKAYCPYSNFRVGAALLGEDGKIYTGCNVENGSYGL--TICAERTAYTKAVSEGCKK 73
Query: 94 LQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ L V+ PCG CRQF E N ++ N ++ +LLP F
Sbjct: 74 FKTLVVTTDVTDRFITPCGACRQFGVEFGN---FDVYCVKPNKTDKFQTTSLNLLPGSFT 130
Query: 147 PNDL 150
PNDL
Sbjct: 131 PNDL 134
>gi|407683754|ref|YP_006798928.1| Cytidine deaminase [Alteromonas macleodii str. 'English Channel
673']
gi|407245365|gb|AFT74551.1| Cytidine deaminase [Alteromonas macleodii str. 'English Channel
673']
Length = 157
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+ L L AQ + P S F VGA L SG F G NVE PL Q AE I
Sbjct: 28 LEKLSQLAFDAQKNSHSPYSNFKVGAAVLTPSGETFSGCNVESAAFPLGQC--AEATAIG 85
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYH-PL 137
N++ + R+ H+ +++ PCG CRQ + E + +T ++ N + +
Sbjct: 86 NMVTQGQKRISHIVIASPNDEFCFPCGGCRQKIAEF---APDETPVTMVSQNGETFETTI 142
Query: 138 SHLLPDRFGPNDL 150
LLP+ F +DL
Sbjct: 143 GELLPNAFRAHDL 155
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
Q+ +N E+L A +A SH+PYS G A++ G + G +ESAA+
Sbjct: 20 QVAMKKNNLEKLSQLAFDAQKNSHSPYSNFKVGAAVLTPSGETFSGCNVESAAF 73
>gi|443713097|gb|ELU06103.1| hypothetical protein CAPTEDRAFT_20269 [Capitella teleta]
Length = 158
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA LG GRI+ G NVE PL ++ AE+ IT + + + +++
Sbjct: 31 PYSKFPVGAAVLGCDGRIYTGCNVECAVYPL--TMCAERNAITKAVSEGCKKFTAIVITS 88
Query: 102 -------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS--HLLPDRFGPNDLLD 152
PCG CRQ + E +++ + ++R Y L+ LLP FGP+ L +
Sbjct: 89 DLKNSIITPCGACRQIIAEFGMDAEVY-----MTKSDRSYTKLTLRELLPLGFGPDSLQE 143
Query: 153 KDV 155
+ +
Sbjct: 144 EKI 146
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L +++ +++ PYSK P G A++ C+G IY G +E A Y ++ + A+ +
Sbjct: 15 EELIDESVKVKRRAYCPYSKFPVGAAVLGCDGRIYTGCNVECAVYPLTMCAERNAITKAV 74
Query: 243 AAG 245
+ G
Sbjct: 75 SEG 77
>gi|222529761|ref|YP_002573643.1| cytidine deaminase [Caldicellulosiruptor bescii DSM 6725]
gi|222456608|gb|ACM60870.1| cytidine deaminase [Caldicellulosiruptor bescii DSM 6725]
Length = 135
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L K AQ A P S+F VGA +GSSG+++ G N+E PL S+ AE+ + I
Sbjct: 17 LAKEAQEKAYAPYSRFRVGAAIVGSSGKVYTGCNIENASYPL--SMCAERVALFKAISEG 74
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDI 120
E +++ L + +PCG CRQ + EL S I
Sbjct: 75 ETKIKALYIIGPENEPISPCGACRQVVFELAKDSTI 110
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A EA K++APYS+ G AI+ G +Y G +E+A+Y S+ + AL ++ G
Sbjct: 18 AKEAQEKAYAPYSRFRVGAAIVGSSGKVYTGCNIENASYPLSMCAERVALFKAISEG 74
>gi|145235827|ref|XP_001390562.1| cytidine deaminase [Aspergillus niger CBS 513.88]
gi|134058251|emb|CAK38443.1| unnamed protein product [Aspergillus niger]
Length = 142
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+ L T +A+ A P SKF VGA L SG G NVE P+ AE+
Sbjct: 13 LETLSTKAIAAKDTAYCPYSKFRVGACILTESGEFVQGANVENASYPVGTC--AERVAFG 70
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ I+ + +AV+ A+PCG CRQF+ E T + I + N +
Sbjct: 71 SAIVAGHRNFKAIAVATDIKPPASPCGMCRQFMSEF-TTPEFPIFMYDGEGN-YTLTTMG 128
Query: 139 HLLPDRFGPNDL 150
LLP FGP+D
Sbjct: 129 ELLPSSFGPSDF 140
>gi|443695049|gb|ELT96041.1| hypothetical protein CAPTEDRAFT_211995 [Capitella teleta]
Length = 158
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA LG GRI+ G NVE PL ++ AE+ IT + + + +++
Sbjct: 31 PYSKFPVGAAVLGCDGRIYTGCNVECAVYPL--TMCAERNAITKAVSEGCKKFTAVVITS 88
Query: 102 -------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS--HLLPDRFGPNDLLD 152
PCG CRQ + E +++ + ++R Y L+ LLP FGP+ L +
Sbjct: 89 DLKNSIITPCGACRQIIAEFGMDAEVY-----MTKSDRSYTKLTLRELLPLGFGPDSLQE 143
Query: 153 KDV 155
+ +
Sbjct: 144 EKI 146
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L +++ +++ PYSK P G A++ C+G IY G +E A Y ++ + A+ +
Sbjct: 15 EELIDESVKVKRRAYCPYSKFPVGAAVLGCDGRIYTGCNVECAVYPLTMCAERNAITKAV 74
Query: 243 AAG 245
+ G
Sbjct: 75 SEG 77
>gi|307943118|ref|ZP_07658463.1| cytidine deaminase [Roseibium sp. TrichSKD4]
gi|307773914|gb|EFO33130.1| cytidine deaminase [Roseibium sp. TrichSKD4]
Length = 131
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
QL T KSA+ A P SKF VGA G+I G NVE P + + AE I+
Sbjct: 6 QLFET-AKSARERAYAPYSKFQVGAAIRTKGGKIIAGCNVENAAFP--EGVCAEGGAISA 62
Query: 86 LILNAEPRLQHLAVSA-----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
++L E + + V A +PCG CRQ ++E D+ + I +N ++ Y ++ L
Sbjct: 63 MVLAGETEIAEVLVIADAEHCSPCGGCRQKIREFAG-DDVLVHIADLNEVKKTY-TMADL 120
Query: 141 LPDRF 145
LP F
Sbjct: 121 LPAGF 125
>gi|421858903|ref|ZP_16291153.1| cytidine deaminase [Paenibacillus popilliae ATCC 14706]
gi|410831528|dbj|GAC41590.1| cytidine deaminase [Paenibacillus popilliae ATCC 14706]
Length = 133
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S+F VGA L + G+IF G NVE L AE+ + + E R+
Sbjct: 12 ARKQAYTPYSRFQVGAAVL-AGGKIFRGCNVENASYGLTNC--AERTAVFKAVSEGEKRI 68
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ +AV A APCG CRQ L E + S+ I +++++ N ++ +S LLP F
Sbjct: 69 EAIAVVADTEGPVAPCGACRQVLAEFCD-SETRIFLSNLHGNTEEW-TISRLLPGAFSAE 126
Query: 149 DL 150
D+
Sbjct: 127 DM 128
>gi|239626749|ref|ZP_04669780.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516895|gb|EEQ56761.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 137
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S FHV A L G +F G N+E S+ AE+ + +A+
Sbjct: 20 PYSHFHVSAALLCGDGTVFTGNNIE--NASYTPSVCAERCAFFKAVSEGRRDFAAIAICG 77
Query: 102 ----------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E N S I + + R+Y L LLPD FGP+DL
Sbjct: 78 GPDGVIKDYCTPCGVCRQVMREFCNPSTFRILVAKSAEDYREYT-LEQLLPDSFGPDDL 135
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
+++L AA++ +S+APYS A++ +G ++ G+ +E+A+Y PS+ + A
Sbjct: 3 RKKLIQAAIDGLPRSYAPYSHFHVSAALLCGDGTVFTGNNIENASYTPSVCAERCAFFKA 62
Query: 242 LAAG 245
++ G
Sbjct: 63 VSEG 66
>gi|377561999|ref|ZP_09791416.1| cytidine deaminase [Gordonia otitidis NBRC 100426]
gi|377520791|dbj|GAB36581.1| cytidine deaminase [Gordonia otitidis NBRC 100426]
Length = 133
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S+F VGA GL + GR+ +G NVE L I AE L+ +L+ RL ++
Sbjct: 21 AYAPYSRFPVGASGLTADGRVVVGCNVENVSYGL--GICAEVGLVASLVATGGGRLCAVS 78
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP--LSHLLPDRFGPNDL 150
V A PCG CRQ L E D+ + + + P L+ LLPD FGP+DL
Sbjct: 79 VCDAAGSILMPCGRCRQVLYE-HGGGDLLV--------DHRAGPTTLARLLPDAFGPDDL 129
>gi|347759236|ref|YP_004866797.1| cytidine deaminase [Gluconacetobacter xylinus NBRC 3288]
gi|347578206|dbj|BAK82427.1| cytidine deaminase [Gluconacetobacter xylinus NBRC 3288]
Length = 132
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 31 LVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
LVKSA + A P S+F VGA GR+F G NVE P + AE I ++
Sbjct: 6 LVKSAIDARGRAYAPYSRFQVGAALETEDGRVFAGCNVENAAYP--EGTCAEAGAIAAMV 63
Query: 88 LNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ +++ + V + PCG CRQ ++E + + S N + L+ LL
Sbjct: 64 MAGGRQIRRIVVCGGGDTACTPCGGCRQKIREF-AVPQTPVTMVSANGSVLLVRTLAELL 122
Query: 142 PDRFGPNDL 150
PD FGP +L
Sbjct: 123 PDSFGPENL 131
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L +A++A +++APYS+ G A+ +G ++ G +E+AAY A+ A + A
Sbjct: 6 LVKSAIDARGRAYAPYSRFQVGAALETEDGRVFAGCNVENAAYPEGTCAEAGAIAAMVMA 65
Query: 245 GG 246
GG
Sbjct: 66 GG 67
>gi|78043042|ref|YP_360385.1| cytidine deaminase [Carboxydothermus hydrogenoformans Z-2901]
gi|77995157|gb|ABB14056.1| cytidine deaminase [Carboxydothermus hydrogenoformans Z-2901]
Length = 132
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 27 LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
LL K A+ A P S F VGA LG SG+I+ G N+E L +I AE+ IT
Sbjct: 7 LLYEKAKEARENAYVPYSGFKVGAAVLGESGKIYQGANIENASYGL--TICAERVAITKA 64
Query: 87 ILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
I E +L+ + V +PCG CRQF+ E + I + + + K L +
Sbjct: 65 ISEGEKKLKAILVVGDTPGPISPCGACRQFMAEFK----IETIYLANLAGDIKEFTLEQI 120
Query: 141 LPDRF 145
LP F
Sbjct: 121 LPYYF 125
>gi|406596746|ref|YP_006747876.1| cytidine deaminase [Alteromonas macleodii ATCC 27126]
gi|406374067|gb|AFS37322.1| Cytidine deaminase [Alteromonas macleodii ATCC 27126]
Length = 157
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+ L L AQ + P S F VGA L SG F G NVE PL Q AE I
Sbjct: 28 LEQLSQLAFDAQKNSHSPYSNFKVGAALLTPSGETFSGCNVESAAFPLGQC--AEATAIG 85
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYH-PL 137
N++ + R+ H+ +++ PCG CRQ + E + +T ++ N + +
Sbjct: 86 NMVTQGQKRISHIVIASPNDEFCFPCGGCRQKIAEF---APDETPVTMVSQNGETFETTI 142
Query: 138 SHLLPDRFGPNDL 150
LLP+ F +DL
Sbjct: 143 GELLPNAFRAHDL 155
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
Q+ +N E+L A +A SH+PYS G A++ G + G +ESAA+
Sbjct: 20 QVAMKKNNLEQLSQLAFDAQKNSHSPYSNFKVGAALLTPSGETFSGCNVESAAF 73
>gi|354558006|ref|ZP_08977263.1| cytidine deaminase [Desulfitobacterium metallireducens DSM 15288]
gi|353549680|gb|EHC19121.1| cytidine deaminase [Desulfitobacterium metallireducens DSM 15288]
Length = 138
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L +SA A P S + VGA L SSG IF G NVE L ++ AE+ I +
Sbjct: 18 LAQSAYAEAYVPYSHYPVGAATLWSSGEIFAGCNVENASFGL--TVCAERNSIFQAVAQG 75
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
E +L+ +A++ +PCG CRQ +E ++ + I E + L LLPD
Sbjct: 76 ERKLKAVAIAVPTETFPSPCGACRQVFREF---AEDCLVILVNGQGETQLTHLKTLLPDS 132
Query: 145 FGPNDL 150
FGP L
Sbjct: 133 FGPEFL 138
>gi|449134875|ref|ZP_21770339.1| cytidine deaminase [Rhodopirellula europaea 6C]
gi|448886354|gb|EMB16761.1| cytidine deaminase [Rhodopirellula europaea 6C]
Length = 147
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L SA+ A P S F+VGA L GRI G NVE L Q AE+ +
Sbjct: 19 VQRLIQAAISARDHAYAPHSHFYVGAALLTHDGRIVEGCNVENASYSLTQC--AERTAVC 76
Query: 85 NLILNAEPRLQHLAVS----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ + +A++ A PCG CRQ L E SD+ + + +++ LS L
Sbjct: 77 SAVAGGYRMFHAVAIASIGGAMPCGACRQVLAEF--GSDLYVYTIDVIDGDQQMRRLSEL 134
Query: 141 LPDRFGPNDL 150
LPD F +D+
Sbjct: 135 LPDAFSTSDI 144
>gi|452991316|emb|CCQ97376.1| Cytidine deaminase [Clostridium ultunense Esp]
Length = 134
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L AQ A P S F VGA L G ++ G N+E ++ AE+ I
Sbjct: 4 QYLIKKALEAQEKAYVPYSNFKVGAALLTEDGELYTGCNIEIASYS--PTLCAERTAIFK 61
Query: 86 LILNAEPRLQHLAVS-----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ +++ +AV PCG CRQ ++E D I + + + R+Y L L
Sbjct: 62 AVSEGHKKIKIIAVVGDSDFTYPCGVCRQVIREF--GKDATIIVANSEEDYREYK-LDDL 118
Query: 141 LPDRFGPNDLLDKD 154
LP FGP DL +K+
Sbjct: 119 LPHSFGPEDLEEKE 132
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K+ L ALEA K++ PYS G A++ +G +Y G +E A+Y+P+L + A+
Sbjct: 3 KQYLIKKALEAQEKAYVPYSNFKVGAALLTEDGELYTGCNIEIASYSPTLCAERTAIFKA 62
Query: 242 LAAG 245
++ G
Sbjct: 63 VSEG 66
>gi|366165037|ref|ZP_09464792.1| cytidine deaminase [Acetivibrio cellulolyticus CD2]
Length = 129
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 30 TLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
LVK A + A P S FHVGA +G+SG+++ G N+E +I AE+ I
Sbjct: 5 NLVKLANDIKKNAYAPYSNFHVGAALIGNSGKVYTGVNIE--NSSYGATICAERTAICKA 62
Query: 87 ILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
I E ++ +A+++ PCG CRQ + E + + +C S N+ + K L+
Sbjct: 63 ISEGEKSIKAIAIASDSEDYTFPCGICRQVILEFADKDLVILC--SNNNGKYKVFSLNDF 120
Query: 141 LPDRF 145
LP+ F
Sbjct: 121 LPNAF 125
>gi|45200974|ref|NP_986544.1| AGL123Wp [Ashbya gossypii ATCC 10895]
gi|44985744|gb|AAS54368.1| AGL123Wp [Ashbya gossypii ATCC 10895]
gi|374109790|gb|AEY98695.1| FAGL123Wp [Ashbya gossypii FDAG1]
Length = 139
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+A+ L+ P SKF VG L +SG +G NVE P I AE+ + +
Sbjct: 18 AAKELSYSPYSKFRVGCCILTASGEYIVGANVENASYP--AGICAERTAVVKAVTAGHTN 75
Query: 94 LQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+A+S PCG CRQ L+E + + + + + + ++ L LLP FGP
Sbjct: 76 WVCIALSGDSSDVVTPCGICRQVLREFVDPKKLTVIMMNADGSKVLQRTLEELLPYSFGP 135
Query: 148 NDL 150
+ L
Sbjct: 136 DSL 138
>gi|385679287|ref|ZP_10053215.1| cytidine deaminase [Amycolatopsis sp. ATCC 39116]
Length = 129
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
V++A++ A P S HVG GL GR+ +G NVE L + AE + L L+
Sbjct: 14 VEAAKS-AYAPYSGLHVGVAGLVDDGRVVVGCNVENASYGL--GLCAECTMAGQLRLSGG 70
Query: 92 PRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
RL +A + PCG CRQ L EL S C+ S P++ +LPD F
Sbjct: 71 GRLVAVACRSGSGDLLMPCGRCRQILFELGGGS----CLVDTPSG---VLPMTSVLPDAF 123
Query: 146 GPNDL 150
GP DL
Sbjct: 124 GPADL 128
>gi|253745915|gb|EET01519.1| Cytidine deaminase [Giardia intestinalis ATCC 50581]
Length = 134
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 31 LVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
LVK+A A P SK+ VGA L SG IF G NVE P+ + AE+ + +
Sbjct: 11 LVKAAIEASEYAYIPYSKYKVGAAILTESGEIFKGCNVENASYPI--GVCAERTAVVKAV 68
Query: 88 LNAEPRLQHLAV----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
+ + AV +PCG CRQ L E ++I + ++ PL+ LLP
Sbjct: 69 SEGKKNMIACAVVTRDGGSPCGMCRQTLNEF--NPKMHIILAKLDGEIMHEMPLNELLPL 126
Query: 144 RFGPNDLL 151
FGP +LL
Sbjct: 127 GFGPENLL 134
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
T K L AA+EA+ ++ PYSK G AI+ G I+KG +E+A+Y + + A
Sbjct: 4 TREQKSALVKAAIEASEYAYIPYSKYKVGAAILTESGEIFKGCNVENASYPIGVCAERTA 63
Query: 238 LVAYLAAG 245
+V ++ G
Sbjct: 64 VVKAVSEG 71
>gi|417303193|ref|ZP_12090255.1| cytidine deaminase [Rhodopirellula baltica WH47]
gi|421610810|ref|ZP_16051976.1| cytidine deaminase [Rhodopirellula baltica SH28]
gi|440712619|ref|ZP_20893235.1| cytidine deaminase [Rhodopirellula baltica SWK14]
gi|327540495|gb|EGF27077.1| cytidine deaminase [Rhodopirellula baltica WH47]
gi|408498594|gb|EKK03087.1| cytidine deaminase [Rhodopirellula baltica SH28]
gi|436442774|gb|ELP35885.1| cytidine deaminase [Rhodopirellula baltica SWK14]
Length = 147
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L SA+ A P S F+VGA L GRI G NVE L Q AE+ +
Sbjct: 19 VQRLIQAAISARDHAYAPHSHFYVGAALLTHDGRIVEGCNVENASYSLTQC--AERTAVC 76
Query: 85 NLILNAEPRLQHLAVS----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ +A++ A PCG CRQ L E SD+ + + +++ LS L
Sbjct: 77 TAVAGGYRMFHAVAIASIGGAMPCGACRQVLAEF--GSDLYVYTIDVIDGDQQMRRLSEL 134
Query: 141 LPDRFGPNDL 150
LPD F +D+
Sbjct: 135 LPDAFSTSDI 144
>gi|147677229|ref|YP_001211444.1| cytidine deaminase [Pelotomaculum thermopropionicum SI]
gi|146273326|dbj|BAF59075.1| cytidine deaminase [Pelotomaculum thermopropionicum SI]
Length = 156
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++ L +A+ A P SKF VGA L GR + G N+E L + AE+ +
Sbjct: 8 VEKLINAAMAARERAYAPYSKFRVGAAILTREGRYYTGCNIENASYGL--TCCAERVALF 65
Query: 85 NLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ N E + +AV+A APCG CRQ L E DI + + + E + L+
Sbjct: 66 KAVSNGERDFEAIAVTAGSDEYCAPCGACRQALAEF--GEDIKVFMAN-GRGEYRMQRLA 122
Query: 139 HLLPDRFGPNDL 150
LLP FG L
Sbjct: 123 ELLPASFGKKAL 134
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVA 240
P E+L AA+ A +++APYSK G AI+ EG Y G +E+A+Y + + AL
Sbjct: 7 PVEKLINAAMAARERAYAPYSKFRVGAAILTREGRYYTGCNIENASYGLTCCAERVALFK 66
Query: 241 YLAAG 245
++ G
Sbjct: 67 AVSNG 71
>gi|410943993|ref|ZP_11375734.1| cytidine deaminase [Gluconobacter frateurii NBRC 101659]
Length = 143
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
+++ L + A++ A P S+F VGA L G ++ G NVE PL AE I
Sbjct: 14 MMEELISRALDARSRAYAPYSRFQVGAA-LRCDGVVYSGCNVENAAYPLGTC--AEGGAI 70
Query: 84 TNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ ++L R++ + + PCG CRQ L+E D+ + + S L
Sbjct: 71 SAMVLGGGTRIEEIVIVGGGDQPCTPCGGCRQKLREF-GQPDLKVHMISTKGEILLTRTL 129
Query: 138 SHLLPDRFGPNDL 150
+ LLPD FGP++L
Sbjct: 130 AELLPDAFGPDNL 142
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L AL+A ++++APYS+ G A + C+G +Y G +E+AAY A+ A +
Sbjct: 16 EELISRALDARSRAYAPYSRFQVGAA-LRCDGVVYSGCNVENAAYPLGTCAEGGAISAMV 74
Query: 243 AAGGS 247
GG+
Sbjct: 75 LGGGT 79
>gi|358068320|ref|ZP_09154786.1| hypothetical protein HMPREF9333_01667 [Johnsonella ignava ATCC
51276]
gi|356693473|gb|EHI55148.1| hypothetical protein HMPREF9333_01667 [Johnsonella ignava ATCC
51276]
Length = 172
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 38 LARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHL 97
+A P S FHVGA LG SG I+ G N+E + AE+ + + E + +
Sbjct: 52 MAYAPYSHFHVGAALLGKSGNIYTGINIE--NASYTPTNCAERTAFFKAVSHGEKEFKAI 109
Query: 98 AVSAA----------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
AV PCG CRQ ++E D I I + R+Y L LLP FGP
Sbjct: 110 AVCGGRDGIVDSYVFPCGVCRQVMREFCRPEDFIIYIAKSPKDYREYK-LKELLPYGFGP 168
Query: 148 NDL 150
DL
Sbjct: 169 EDL 171
>gi|389815825|ref|ZP_10207073.1| hypothetical protein A1A1_03392 [Planococcus antarcticus DSM 14505]
gi|388465548|gb|EIM07864.1| hypothetical protein A1A1_03392 [Planococcus antarcticus DSM 14505]
Length = 136
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+A++ A P SKF VGA L + G+++LG N+E G + AE+ + + +
Sbjct: 12 AARSNAYVPYSKFPVGAALLTTDGKVYLGCNIENAGYSMTNC--AERTAVFKAVSEGDKT 69
Query: 94 LQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
LAVSA +PCG CRQ L E D+ + +T++ + ++ +S LLP F
Sbjct: 70 FMALAVSADTPGPVSPCGACRQVLAEF-CAPDMPVYLTNLKGDVQE-TTISELLPGAFST 127
Query: 148 NDL 150
DL
Sbjct: 128 EDL 130
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
KE+L A+ A + ++ PYSK P G A++ +G +Y G +E+A Y+
Sbjct: 3 KEQLMKQAIAARSNAYVPYSKFPVGAALLTTDGKVYLGCNIENAGYS 49
>gi|419760423|ref|ZP_14286702.1| cytidine deaminase [Thermosipho africanus H17ap60334]
gi|407514526|gb|EKF49341.1| cytidine deaminase [Thermosipho africanus H17ap60334]
Length = 129
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K AQ A P S F VGA L SG+IF G NVE L S AE+ I +
Sbjct: 5 LIELAKKAQKNAYAPYSNFKVGAAILTKSGKIFTGANVENASYGL--SCCAERNAIFKAV 62
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E + + V +PCG CRQ + E D + + N N +K +S LL
Sbjct: 63 SEGETQFSKIVVVGDTEEPISPCGACRQVMAEF---GDFEVILVGKNGNIKK-TTVSELL 118
Query: 142 PDRFGPNDL 150
P F L
Sbjct: 119 PYNFDKEHL 127
>gi|344996687|ref|YP_004799030.1| cytidine deaminase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964906|gb|AEM74053.1| cytidine deaminase [Caldicellulosiruptor lactoaceticus 6A]
Length = 136
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L K AQ A P S+F VGA +GSS +++ G N+E PL S+ AE+ + I
Sbjct: 17 LAKEAQKKAYAPYSRFRVGAAAVGSSSKVYTGCNIENASYPL--SMCAERVALFKAISEG 74
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDI---NICITS-INSNERKYHP 136
E ++ L + +PCG CRQ + EL S I N +T I +N ++ P
Sbjct: 75 ESEIKALYIIGPENEPISPCGACRQVIFELAKDSTIYLSNFDMTKVIETNSKELLP 130
>gi|296242289|ref|YP_003649776.1| cytidine deaminase [Thermosphaera aggregans DSM 11486]
gi|296094873|gb|ADG90824.1| cytidine deaminase [Thermosphaera aggregans DSM 11486]
Length = 128
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 30 TLVKSAQTLAR---PPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
TLV SA R P S HV A LGS+G+++ G NVE L +I AE+ + +
Sbjct: 6 TLVSSAVKALRNSYAPYSNIHVAASVLGSNGKVYTGVNVENASYGL--TICAERSAVVQM 63
Query: 87 ILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ + E + +A+ PCG CRQF+ E D+ I + S++S + LS L
Sbjct: 64 VSDGERKPVKIAIVTDLKNPIPPCGACRQFIAEFN--PDVEIILYSVSSGKTVRTRLSEL 121
Query: 141 LPDRF 145
P+ F
Sbjct: 122 FPNPF 126
>gi|444728065|gb|ELW68529.1| Cytidine deaminase [Tupaia chinensis]
Length = 146
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 16 MAQKSGLTVLQLLPTLV-------KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFP 68
MAQ+S + L +P LV + A+ A P S F VGA L GRIF G NVE
Sbjct: 1 MAQESPASTL--VPELVQQLLLSSREAKKSAYCPYSHFPVGAALLTEDGRIFTGCNVENA 58
Query: 69 GLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDIN 121
PL + AE+ + I R + +A+S+ +PCG CRQ ++E + +
Sbjct: 59 CYPL--GVCAERTALQKAISEGYKRFRAIAISSDLQDDFISPCGACRQVMREFGTSWAVY 116
Query: 122 ICITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + + LLP FGP DL
Sbjct: 117 M---TKPDGTYVVRTVQELLPCSFGPEDL 142
>gi|62857659|ref|NP_001017217.1| cytidine deaminase [Xenopus (Silurana) tropicalis]
gi|89269568|emb|CAJ82852.1| cytidine deaminase [Xenopus (Silurana) tropicalis]
Length = 151
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
++Q L A+ A P SKF VGA L + G++ LG NVE L I AE+ I
Sbjct: 20 LIQRLVAQSHEAKQRAHCPYSKFRVGAALLTADGKVILGCNVENACYAL--GICAERTAI 77
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + +AV++ PCG CRQ ++E DI + + S
Sbjct: 78 QKAVSEGYKEFRAIAVASDVETEFITPCGACRQVMREFGAEWDIYL---TKPSGTYTRTT 134
Query: 137 LSHLLPDRFGPNDL 150
L LLP FGP DL
Sbjct: 135 LRQLLPMSFGPEDL 148
>gi|339010533|ref|ZP_08643103.1| cytidine deaminase [Brevibacillus laterosporus LMG 15441]
gi|421873900|ref|ZP_16305509.1| cytidine deaminase [Brevibacillus laterosporus GI-9]
gi|338772688|gb|EGP32221.1| cytidine deaminase [Brevibacillus laterosporus LMG 15441]
gi|372457011|emb|CCF15058.1| cytidine deaminase [Brevibacillus laterosporus GI-9]
Length = 132
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K+A+ A P SKF VGA L +G+++LG N+E PL AE+ + +
Sbjct: 11 KTARETAYVPYSKFPVGAALLSETGKVYLGCNIENAAYPLCNC--AERTALFKAYSEGDK 68
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
Q +AV A PCG CRQ + E+ D+ + ++++N + +S LLP F
Sbjct: 69 TYQAIAVVADTPKPVPPCGACRQVMAEM-CPPDMKVILSNLN-GDVTVTTVSELLPGAFT 126
Query: 147 PNDLL 151
DLL
Sbjct: 127 KEDLL 131
>gi|448321370|ref|ZP_21510850.1| cytidine deaminase [Natronococcus amylolyticus DSM 10524]
gi|445604230|gb|ELY58181.1| cytidine deaminase [Natronococcus amylolyticus DSM 10524]
Length = 130
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ QT A P S++ VGA + G +F+G N+E S+HAE+ I + N
Sbjct: 9 RDVQTDAHVPYSEYRVGAALETADGEVFVGCNLENANFS--NSLHAEEVAIAEAVKNGHR 66
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLP 142
LAVS+ PCG CRQ L E + D+++ + E + L LLP
Sbjct: 67 DFSRLAVSSDRRDGVTPCGMCRQTLSEFCD-GDLDVFCDEGDDEEPSEYTLEELLP 121
>gi|428204038|ref|YP_007082627.1| cytidine deaminase [Pleurocapsa sp. PCC 7327]
gi|427981470|gb|AFY79070.1| cytidine deaminase, homotetrameric [Pleurocapsa sp. PCC 7327]
Length = 137
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 31 LVKSAQTLAR---PPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L ++A+ +AR P SKF VGA LG G I++G NVE L ++ AE+ + I
Sbjct: 12 LCQAAREVARLAYAPYSKFRVGAAILGQRG-IYVGTNVENASYGL--TLCAERSAFASAI 68
Query: 88 LNAEPRLQHLAV------------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYH 135
E + Q +A+ S PCG CRQ++ EL T++I IC +
Sbjct: 69 ARGERKFQAVAIACIDAPNPEEIESITPCGACRQWIAELAATAEIIICGCDRSFGIEDLL 128
Query: 136 PLSHLLPD 143
PLS L D
Sbjct: 129 PLSFRLED 136
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
+ +E+L AA E A ++APYSK G AI+ G IY G+ +E+A+Y +L ++A
Sbjct: 5 SSQEREKLCQAAREVARLAYAPYSKFRVGAAILGQRG-IYVGTNVENASYGLTLCAERSA 63
Query: 238 LVAYLAAG 245
+ +A G
Sbjct: 64 FASAIARG 71
>gi|374296311|ref|YP_005046502.1| cytidine deaminase [Clostridium clariflavum DSM 19732]
gi|359825805|gb|AEV68578.1| cytidine deaminase [Clostridium clariflavum DSM 19732]
Length = 130
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+ L +L + A P S FHVGA + SG+++ G NVE +I AE+ I
Sbjct: 4 EKLISLANEVKKNAYAPYSNFHVGAALITDSGKVYTGTNVE--NASYGATICAERTAIVK 61
Query: 86 LILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ E +++ LA+S PCG CRQ + E + + IC E K ++
Sbjct: 62 AVSEGERKIKALAISGDSDDYIYPCGICRQIISEFADEDFVVICCNK--KGEYKVLSINE 119
Query: 140 LLPDRF 145
+LP F
Sbjct: 120 ILPHPF 125
>gi|238507535|ref|XP_002384969.1| cytidine deaminase, putative [Aspergillus flavus NRRL3357]
gi|220689682|gb|EED46033.1| cytidine deaminase, putative [Aspergillus flavus NRRL3357]
Length = 203
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 17 AQKSGLTV--LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
+ K LT LQ L + +A+ A P SKF VGA L SG +G NVE P+
Sbjct: 58 SSKPSLTTQELQTLASKAIAAKATAYCPYSKFRVGACILTQSGEYIVGANVENASYPVGT 117
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSIN 128
AE+ ++ + +AV+ A+PCG CRQF+ E T I +
Sbjct: 118 C--AERVAFGTAVVAGYHDFKAVAVATDSNPPASPCGMCRQFMNEF-TTPSFPI---YMY 171
Query: 129 SNERKY--HPLSHLLPDRFGPNDLLDKDV 155
+E Y + LLPD FGP D + V
Sbjct: 172 GSEGTYTIKTMRELLPDSFGPEDFSKERV 200
>gi|32477209|ref|NP_870203.1| cytidine deaminase [Rhodopirellula baltica SH 1]
gi|32447760|emb|CAD77278.1| cytidine deaminase [Rhodopirellula baltica SH 1]
Length = 166
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L SA+ A P S F+VGA L GRI G NVE L Q AE+ +
Sbjct: 38 VQRLIQAAISARDHAYAPHSHFYVGAALLTHDGRIVEGCNVENASYSLTQC--AERTAVC 95
Query: 85 NLILNAEPRLQHLAVS----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ +A++ A PCG CRQ L E SD+ + + +++ LS L
Sbjct: 96 TAVAGGYRMFHAVAIASIGGAMPCGACRQVLAEF--GSDLYVYTIDVIDGDQQMRRLSEL 153
Query: 141 LPDRFGPNDL 150
LPD F +D+
Sbjct: 154 LPDAFSTSDI 163
>gi|308070842|ref|YP_003872447.1| cytidine deaminase [Paenibacillus polymyxa E681]
gi|305860121|gb|ADM71909.1| Cytidine deaminase (Cytidine aminohydrolase) [Paenibacillus
polymyxa E681]
Length = 131
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA LGS G I+ G NVE L AE+ I ++ ++
Sbjct: 12 ARKQAYVPYSNFQVGAAVLGSDGTIYHGCNVENASYGLCNC--AERTAIFKMVSEGCRQI 69
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+AV A +PCG CRQ + E + D I +T+++ N ++ + LLP F P
Sbjct: 70 DSIAVVADTEGPVSPCGACRQVISEFAH-QDTKIYLTNLHGNTEEW-TVDQLLPGAFRPA 127
Query: 149 DL 150
DL
Sbjct: 128 DL 129
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K++L ALEA +++ PYS G A++ +G IY G +E+A+Y
Sbjct: 2 KDQLIQKALEARKQAYVPYSNFQVGAAVLGSDGTIYHGCNVENASY 47
>gi|373494655|ref|ZP_09585256.1| cytidine deaminase [Eubacterium infirmum F0142]
gi|371968098|gb|EHO85562.1| cytidine deaminase [Eubacterium infirmum F0142]
Length = 129
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAE 79
S +T ++L KSA+ A P S F VGA L + G +F G NVE +I AE
Sbjct: 2 SKITDIELYKLARKSAEN-AYAPFSGFKVGAAILTTGGDVFTGVNVE--NSSYGATICAE 58
Query: 80 QFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERK 133
+ TN + + +A++ A+PCG CRQFL E + IT N +E +
Sbjct: 59 RVACTNAVSEGFREFEAIAIATYGGVEASPCGMCRQFLFEFAPKLRV---ITGKNEDEIE 115
Query: 134 YHPLSHLLPDRF 145
L LLP F
Sbjct: 116 VSNLDELLPKGF 127
>gi|325090162|gb|EGC43472.1| cytidine deaminase [Ajellomyces capsulatus H88]
Length = 141
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQ L + +A+ A P SKF VGA L +G NVE P+ + AE+ +
Sbjct: 12 LQTLSSKAIAAKEAAHCPYSKFRVGACLLTEEREFIVGANVENVSYPV--GVCAERCAFS 69
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSI------NSNER 132
++ + +AV+ A+PCG CRQF++E C S +
Sbjct: 70 TAVVAGHKNFKAIAVATDIVPGASPCGMCRQFMREF--------CPPSFPVYMYGGDGQY 121
Query: 133 KYHPLSHLLPDRFGPNDL 150
+ LLP+ FGPNDL
Sbjct: 122 TVKTMGELLPNSFGPNDL 139
>gi|392395106|ref|YP_006431708.1| cytidine deaminase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526184|gb|AFM01915.1| cytidine deaminase [Desulfitobacterium dehalogenans ATCC 51507]
Length = 139
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 26 QLLPTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
+L+ L++ AQ A P S + VGA L SGRI G NVE L +I AE+
Sbjct: 10 ELIEELIRRAQEAYKNAYVPYSHYPVGAATLWESGRIIAGCNVENASYGL--TICAERNS 67
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + + E RL+ +AV+ +PCG CRQ L+E S + I + K
Sbjct: 68 VFHAAYHGERRLRAVAVAVPTDVFPSPCGACRQVLREF---SQDCLVILVNGKGQTKMTR 124
Query: 137 LSHLLPDRFGPNDL 150
L+ LLPD FGP L
Sbjct: 125 LNTLLPDSFGPEFL 138
>gi|336435690|ref|ZP_08615405.1| cytidine deaminase [Lachnospiraceae bacterium 1_4_56FAA]
gi|336001143|gb|EGN31289.1| cytidine deaminase [Lachnospiraceae bacterium 1_4_56FAA]
Length = 142
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
V+Q L A+ + P S F VGA L SG+I+ G N+E +I AE+ +
Sbjct: 7 VIQDLIRRAMKAREYSYSPYSNFSVGAAILSESGKIYTGCNIE--SASYTPTICAERVAL 64
Query: 84 TNLILNAEPRLQHLAVS-------------AAPCGHCRQFLQELRNTSDINICITSINSN 130
+ E + + LA+ +PCG CRQ L E D+ + + N
Sbjct: 65 FKAVSEGERKFKMLALVGGPKNGEKKTEEIVSPCGVCRQMLYEF--GKDLKVVMA---DN 119
Query: 131 ERKYHP--LSHLLPDRFGPNDLL 151
E KY L LLP FGP++L+
Sbjct: 120 EEKYEVRMLEELLPYGFGPDNLI 142
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A++A S++PYS G AI+ G IY G +ESA+Y P++ + AL ++ G
Sbjct: 15 AMKAREYSYSPYSNFSVGAAILSESGKIYTGCNIESASYTPTICAERVALFKAVSEG 71
>gi|432859973|ref|XP_004069328.1| PREDICTED: cytidine deaminase-like [Oryzias latipes]
Length = 189
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
+Q L + A+ A P S+F VGA L R+F G NVE L + AE+ +
Sbjct: 49 TVQRLIFQSQEAKKKAYCPYSQFRVGAALLTIDNRVFTGCNVENACYNL--GMCAERNAM 106
Query: 84 TNLILNAEPRLQHLAVSAA-------PCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + +AV++ PCG CRQF++E +D ++ ++ + + RK
Sbjct: 107 AKAVSEGHRNFKAIAVASDVRDHFVFPCGGCRQFMREF--GTDWDVYLSHPDGSHRKM-T 163
Query: 137 LSHLLPDRFGPNDLLDKDVP 156
+ LLP FGP DL K +P
Sbjct: 164 VEELLPFSFGPEDLSKKKIP 183
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 176 PETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQ 235
PET +RL + + EA K++ PYS+ G A++ + ++ G +E+A YN + +
Sbjct: 47 PET---VQRLIFQSQEAKKKAYCPYSQFRVGAALLTIDNRVFTGCNVENACYNLGMCAER 103
Query: 236 AALVAYLAAG 245
A+ ++ G
Sbjct: 104 NAMAKAVSEG 113
>gi|415885556|ref|ZP_11547484.1| cytidine deaminase [Bacillus methanolicus MGA3]
gi|387591225|gb|EIJ83544.1| cytidine deaminase [Bacillus methanolicus MGA3]
Length = 132
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
+++ L K A+ A P SKF VGAV L G+++ G N+E + AE+ +
Sbjct: 2 IMEHLIAEAKKAREKAYVPYSKFAVGAVLLTDGGKVYHGCNIENAAYSMTNC--AERTAL 59
Query: 84 TNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
E + + LAV A PCG CRQ + EL D+ + + ++N + ++ +
Sbjct: 60 FKAFSEGERKFKALAVIADTKRPVPPCGACRQVISEL-CPQDMKVVLANLNGDIKEL-TV 117
Query: 138 SHLLPDRFGPNDLLD 152
LLP F P DL +
Sbjct: 118 KELLPGAFSPEDLYE 132
>gi|336321614|ref|YP_004601582.1| cytidine deaminase [[Cellvibrio] gilvus ATCC 13127]
gi|336105195|gb|AEI13014.1| cytidine deaminase [[Cellvibrio] gilvus ATCC 13127]
Length = 132
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T+ A A P SKF VGA + GR+ G NVE + ++ AE L++ L
Sbjct: 9 LRTVATEAMRKAYVPYSKFPVGAAAIVDDGRVVSGCNVENASYGV--TLCAECSLVSALT 66
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
++ RL PCG CRQ L E I ++ + P++ +L
Sbjct: 67 MSGGGRLVAFTCVDGHGNVLMPCGRCRQLLWEHGGARLIVETVSGVK-------PMTEVL 119
Query: 142 PDRFGPNDLLDK 153
PD FGP+DL ++
Sbjct: 120 PDAFGPDDLEER 131
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
TE + L+ A EA K++ PYSK P G A + +G + G +E+A+Y +L + +
Sbjct: 2 TEVDWDALRTVATEAMRKAYVPYSKFPVGAAAIVDDGRVVSGCNVENASYGVTL-CAECS 60
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVV------RQ---EH-AARLLLQVIS 284
LV+ L G G R+VA V+ V+ RQ EH ARL+++ +S
Sbjct: 61 LVSALTMSGGG-------RLVAFTCVDGHGNVLMPCGRCRQLLWEHGGARLIVETVS 110
>gi|167770292|ref|ZP_02442345.1| hypothetical protein ANACOL_01635 [Anaerotruncus colihominis DSM
17241]
gi|167667614|gb|EDS11744.1| cytidine deaminase [Anaerotruncus colihominis DSM 17241]
Length = 145
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L L A+ + P S F VGA L S G+++ G NVE +I AE+
Sbjct: 4 QELIKLAFEAREHSYSPYSGFCVGAALLTSGGKVYQGCNVE--NASYGAAICAERNAAMK 61
Query: 86 LILNAEPRLQHLAVS-------------AAPCGHCRQFLQELRNTSDINICITSINSNER 132
+ + E R + +A+ A PCG CRQFL+E + + + + +
Sbjct: 62 AVYDGERRFEAIAICGYPRGGRPEDAGFAYPCGICRQFLREFCDPKQMKVYVARTPDDVL 121
Query: 133 KYHPLSHLLPDRFGPNDLLDKDVP 156
+ L ++P FGP DL+ DVP
Sbjct: 122 E-ATLEDMMPHSFGPEDLI-GDVP 143
>gi|398817962|ref|ZP_10576561.1| cytidine deaminase, homotetrameric [Brevibacillus sp. BC25]
gi|398028760|gb|EJL22263.1| cytidine deaminase, homotetrameric [Brevibacillus sp. BC25]
Length = 132
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ LA P SKF VGA L SG+++LGGN+E L AE+ + +
Sbjct: 13 ARELAYVPYSKFQVGAALLAESGKVYLGGNIENAAYSLCNC--AERTALFKAYSEGDRTY 70
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ LAV+A +PCG CRQ + EL D+ + +T++ + + +S LLP F
Sbjct: 71 KALAVAADTPQAVSPCGACRQVIAEL-CPPDMPVFLTNLKGDIWE-TTVSALLPGAFTKE 128
Query: 149 DL 150
DL
Sbjct: 129 DL 130
>gi|444432951|ref|ZP_21228099.1| cytidine deaminase [Gordonia soli NBRC 108243]
gi|443886196|dbj|GAC69820.1| cytidine deaminase [Gordonia soli NBRC 108243]
Length = 134
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 21/128 (16%)
Query: 33 KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
K++Q +A P S++ VGA G + GR+ +G NVE L + AE L+ +L+
Sbjct: 13 KASQVMAHAYAPYSRYPVGAAGYTADGRVVVGCNVENVSYGL--GVCAEVGLVADLVSGG 70
Query: 91 EPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP--LSHLLP 142
RL ++VS PCG CRQ L E +D+ + + + P L+ LLP
Sbjct: 71 GGRLVAVSVSDGRGEVLTPCGRCRQVLIE-HGGADLLV--------DHRGGPVTLATLLP 121
Query: 143 DRFGPNDL 150
D FGP+DL
Sbjct: 122 DAFGPDDL 129
>gi|355670668|ref|ZP_09057415.1| cytidine deaminase [Clostridium citroniae WAL-17108]
gi|354816105|gb|EHF00694.1| cytidine deaminase [Clostridium citroniae WAL-17108]
Length = 141
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S FHV A L + G ++ G N+E S+ AE+ I + + + +AV
Sbjct: 20 PYSHFHVSAALLCADGTVYTGNNIE--NAAYTPSVCAERCAIFKAVGDGRREFEAIAVCG 77
Query: 102 AP----------CGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
P CG CRQ ++E + S + + + R+Y L LLPD FGP+ L
Sbjct: 78 GPDGVIEDYCPPCGVCRQVMREFCDPSSFRVLVAKTAEDYREY-TLEQLLPDGFGPDHL 135
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K++L A++ +S+APYS A++ +G +Y G+ +E+AAY PS+ + A+
Sbjct: 3 KQKLIQMAVDGLGRSYAPYSHFHVSAALLCADGTVYTGNNIENAAYTPSVCAERCAIFKA 62
Query: 242 LAAG 245
+ G
Sbjct: 63 VGDG 66
>gi|114705465|ref|ZP_01438373.1| cytidine deaminase [Fulvimarina pelagi HTCC2506]
gi|114540250|gb|EAU43370.1| cytidine deaminase [Fulvimarina pelagi HTCC2506]
Length = 142
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A A P S+F VGA + GRI+ G NVE P + AE I +L+++
Sbjct: 10 KLAMRKAYAPYSRFPVGAALRTADGRIYAGCNVESVSFP--EGWCAETTAIGHLVMDGGG 67
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ LAV AA PCG CRQ + E + +D I + +++S + LLP F
Sbjct: 68 HIAELAVVAANLNGCTPCGGCRQRIAEFAD-ADTKIHLCNVDSGVVNTVTMGELLPLVFS 126
Query: 147 PNDL 150
+DL
Sbjct: 127 TDDL 130
>gi|363419205|ref|ZP_09307306.1| cytidine deaminase [Rhodococcus pyridinivorans AK37]
gi|359737290|gb|EHK86222.1| cytidine deaminase [Rhodococcus pyridinivorans AK37]
Length = 139
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 33 KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
K+ + + R P S F VGA GL GR+ LG NVE L + AE L+ NL
Sbjct: 12 KAHEVMGRAYAPYSGFPVGAAGLTVDGRMVLGCNVENVSHGL--GLCAECVLVGNLFAQG 69
Query: 91 EPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
RL+ +AV + PCG CRQ L E D+ + R+ L LLPD
Sbjct: 70 GGRLRAVAVCDSRGHVLTPCGRCRQVLLE-HGGPDLEV---DAQGGPRR---LCELLPDA 122
Query: 145 FGPNDL 150
FGP+DL
Sbjct: 123 FGPDDL 128
>gi|365827853|ref|ZP_09369693.1| hypothetical protein HMPREF0975_01476 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365264663|gb|EHM94460.1| hypothetical protein HMPREF0975_01476 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 144
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L A T A P S+F VGA L GR+ G NVE G + ++ AE L++ LI
Sbjct: 17 LHELAVEAMTHAYAPYSRFKVGAAALVDDGRLVSGCNVENAGYGV--TLCAECGLVSELI 74
Query: 88 LNAEPRL------QHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
RL L + APCG CRQ L E D+ + + S + +L
Sbjct: 75 RTGGGRLVAFACVDALGRACAPCGRCRQLLSE-HAADDMVLAMPS------GMMSIDEVL 127
Query: 142 PDRFGPNDL 150
PDRF +D+
Sbjct: 128 PDRFTADDV 136
>gi|406989395|gb|EKE09183.1| hypothetical protein ACD_16C00209G0030 [uncultured bacterium]
Length = 151
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L +SAQ A P SKF VGA + G ++G NVE + S AE+ I ++
Sbjct: 8 LIKLARSAQEKAYAPYSKFSVGAALVAQDGSFYMGCNVE--NISYGLSCCAERNAIFKMV 65
Query: 88 LNAEP--RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
P +++ +AVS PCG CRQ +QE + C + + +
Sbjct: 66 SEKGPHQKIKAIAVSTKADIPCTPCGACRQVIQEFSTPETVVFC---KGKDGYVSYAMKD 122
Query: 140 LLPDRFGPNDLLDKD 154
LLP F + LD D
Sbjct: 123 LLPGAFTEFEALDHD 137
>gi|398409726|ref|XP_003856328.1| hypothetical protein MYCGRDRAFT_102480 [Zymoseptoria tritici
IPO323]
gi|339476213|gb|EGP91304.1| hypothetical protein MYCGRDRAFT_102480 [Zymoseptoria tritici
IPO323]
Length = 167
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T +Q L A+ A P SKF VGA L S+G I G NVE P+ AE+
Sbjct: 24 TDVQSLQEKCTEAKARAYCPYSKFRVGAALLLSNGTIVQGANVENAAYPVGTC--AERVA 81
Query: 83 ITNLILNAEPR--LQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERK- 133
I ++ + ++ +AV+ A+PCG CRQF++E S C + + K
Sbjct: 82 IGTAVVQGAKKGDIRAIAVATDISPPASPCGMCRQFIREFCEPS----CPILMYDKDGKS 137
Query: 134 -YHPLSHLLPDRFGPNDLLDKD 154
L LLP FGP LL D
Sbjct: 138 VVMTLDQLLPMSFGPEKLLTTD 159
>gi|344229983|gb|EGV61868.1| cytidine deaminase [Candida tenuis ATCC 10573]
Length = 145
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L A++L+ P SKF VG + S G G N+E SI AE+ I +
Sbjct: 16 LKQLCLEARSLSYSPYSKFRVGCTLVTSEGEFISGANIE--NASYGGSICAERSTICKAV 73
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ + + +A+S+ +PCG CRQF++E +I I + N + L LL
Sbjct: 74 NERKYKFKVIAISSDSQEAISPCGICRQFIREF--GKEIPILMFGQEGNTHELMNLEELL 131
Query: 142 PDRFGPNDL 150
P FGP+ L
Sbjct: 132 PKSFGPSWL 140
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
++P TE +LK LEA + S++PYSK G ++ EG G+ +E+A+Y S+
Sbjct: 5 ELPLTEAEVIKLKQLCLEARSLSYSPYSKFRVGCTLVTSEGEFISGANIENASYGGSI 62
>gi|414341057|ref|YP_006982578.1| cytidine deaminase [Gluconobacter oxydans H24]
gi|411026392|gb|AFV99646.1| putative cytidine deaminase [Gluconobacter oxydans H24]
Length = 130
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
A++ A P S++ VGA L G I+ G NVE PL AE I+ ++L R
Sbjct: 11 DARSRAYAPYSRYQVGAA-LRCDGVIYSGCNVENAAYPLGTC--AEGGAISAMVLGGGQR 67
Query: 94 LQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
++ + + PCG CRQ L+E D+ + + S L+ LLPD FGP
Sbjct: 68 IEEIVIVGGGDQPCTPCGGCRQKLREF-GQPDLKVHMISSTGKLLLTRTLADLLPDAFGP 126
Query: 148 NDL 150
++L
Sbjct: 127 DNL 129
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+A ++++APYS+ G A+ C+G IY G +E+AAY A+ A + GG
Sbjct: 9 ALDARSRAYAPYSRYQVGAALR-CDGVIYSGCNVENAAYPLGTCAEGGAISAMVLGGG 65
>gi|392381982|ref|YP_005031179.1| cytidine deaminase [Azospirillum brasilense Sp245]
gi|356876947|emb|CCC97742.1| cytidine deaminase [Azospirillum brasilense Sp245]
Length = 142
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S F VGA LG SGRI G NVE P Q AE I +IL + ++ +AV
Sbjct: 27 PYSHFSVGAAILGESGRIHAGANVENAAYPQGQC--AEASAIGAMILAGDRSIRAIAVMG 84
Query: 102 A---------PCGHCRQFLQEL-RNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L+E + + I++C R+ L LLP FGP++L
Sbjct: 85 GQSGDGRLCTPCGGCRQRLREFAKPDTPIHVCGP---EGLRQTFRLDELLPHSFGPDNL 140
>gi|387929772|ref|ZP_10132449.1| cytidine deaminase [Bacillus methanolicus PB1]
gi|387586590|gb|EIJ78914.1| cytidine deaminase [Bacillus methanolicus PB1]
Length = 139
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M ++ + +++ L K A+ A P SKF VGA L G+I+ G N+E +
Sbjct: 1 MRKEEIVLIIEQLVAEAKKAREKAYVPYSKFAVGAALLTDDGKIYHGCNIENAAYSMTNC 60
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINS 129
AE+ + + + + LAV A PCG CRQ + EL D+ + +T++N
Sbjct: 61 --AERTALFKALSEGDRNFKALAVIADTKRPVPPCGACRQVISEL-CPQDMKVVLTNLNG 117
Query: 130 NERKYHPLSHLLPDRFGPNDL 150
+ ++ LLP F P DL
Sbjct: 118 DIKELTA-KELLPGAFSPEDL 137
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E+L A +A K++ PYSK G A++ +G IY G +E+AAY+ + + AL L
Sbjct: 11 EQLVAEAKKAREKAYVPYSKFAVGAALLTDDGKIYHGCNIENAAYSMTNCAERTALFKAL 70
Query: 243 AAG 245
+ G
Sbjct: 71 SEG 73
>gi|335441442|ref|ZP_08562141.1| cytidine deaminase [Halorhabdus tiamatea SARL4B]
gi|334886621|gb|EGM24971.1| cytidine deaminase [Halorhabdus tiamatea SARL4B]
Length = 132
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S++ VGA +SG ++ G NVE + S HAE+ + I +
Sbjct: 13 ARKEAYVPYSEYPVGAALETASGEVYRGFNVEI--VNYSNSFHAEELAVMGAIRDGHTDF 70
Query: 95 QHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ +AV +A PCG CRQ E D + I + + E K + L LLPD P
Sbjct: 71 ERVAVVSAEHDGVTPCGMCRQTFAEF---CDDSFEIYTEDHGEIKEYTLGGLLPDAMKPG 127
Query: 149 DLLDK 153
+L D+
Sbjct: 128 NLQDR 132
>gi|421074874|ref|ZP_15535895.1| cytidine deaminase [Pelosinus fermentans JBW45]
gi|392527094|gb|EIW50199.1| cytidine deaminase [Pelosinus fermentans JBW45]
Length = 132
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P S F VGA +G S +I+ G NVE L AE+ I I E
Sbjct: 10 REAREYAYVPFSHFKVGAAVVGDSQKIYRGCNVENASFGLTNC--AERTAIFKAISEGEH 67
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+++ LAV A +PCG CRQ L E T D I + +++ + + + LLP F
Sbjct: 68 KIEALAVIADTEDPVSPCGACRQVLSEF-CTRDTKIYLANLHGDIEVW-TMEQLLPGSFK 125
Query: 147 PNDLLDK 153
+D+ K
Sbjct: 126 SSDMDKK 132
>gi|284992771|ref|YP_003411325.1| cytidine deaminase [Geodermatophilus obscurus DSM 43160]
gi|284066016|gb|ADB76954.1| cytidine deaminase [Geodermatophilus obscurus DSM 43160]
Length = 135
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A T A P S+F VG GL GR+ G NVE L + AE ++++L
Sbjct: 14 REAMTHAYAPYSRFPVGVAGLVDDGRVVTGCNVENASYGL--GLCAECGMVSDLARTGGG 71
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
RL +A PCG CRQ L E + I + P+ +LPD FG
Sbjct: 72 RLVAVACVGGDGQPLMPCGRCRQLLWEHGGPEML------IETVSLGIVPMREVLPDAFG 125
Query: 147 PNDL 150
P+DL
Sbjct: 126 PDDL 129
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
E E L+ AA EA ++APYS+ P GVA + +G + G +E+A+Y L +
Sbjct: 2 AEPDWEALRGAAREAMTHAYAPYSRFPVGVAGLVDDGRVVTGCNVENASYGLGL-CAECG 60
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALV 263
+V+ LA G G R+VA A V
Sbjct: 61 MVSDLARTGGG-------RLVAVACV 79
>gi|260765332|gb|ACX49726.1| cytidine deaminase [uncultured Chloroflexi bacterium 1i19]
Length = 128
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L SA+ A P S + VGA L +G I G NVE +I AE+ +T+
Sbjct: 8 QQLVAAAHSARKQAYAPYSNYAVGAAVLTENGEIIPGCNVE--NASYGGTICAERVALTS 65
Query: 86 LILNAEPRLQHLAV----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
I + RL +AV +PCG CRQ + EL D+++ I+ N R + LL
Sbjct: 66 AIAQGKRRLTAIAVVTVDGGSPCGFCRQVMVEL--GVDMDVYISDAAGNFRS-TTVRALL 122
Query: 142 PDRFG 146
PD FG
Sbjct: 123 PDAFG 127
>gi|154288102|ref|XP_001544846.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408487|gb|EDN04028.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 141
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQ L + +A+ A P SKF VGA L +G NVE P+ + AE+ +
Sbjct: 12 LQTLSSKAIAAKEAAHCPYSKFRVGACLLTEEREFIVGANVENVSYPV--GVCAERCAFS 69
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKY--HP 136
++ + +AV+ A+PCG CRQF++E S + + KY
Sbjct: 70 TAVVAGHKNFRAIAVATDIVPGASPCGMCRQFMREFCPPSF----PVYLYGGDGKYTVKT 125
Query: 137 LSHLLPDRFGPNDL 150
+ LLP FGPNDL
Sbjct: 126 MGELLPHSFGPNDL 139
>gi|359764279|ref|ZP_09268128.1| cytidine deaminase [Gordonia polyisoprenivorans NBRC 16320]
gi|359318345|dbj|GAB20961.1| cytidine deaminase [Gordonia polyisoprenivorans NBRC 16320]
Length = 145
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 33 KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
K+ + +AR P S+F VGA GL G + GGNVE L + AE L++ LI +
Sbjct: 5 KANEMIARAYAPYSRFPVGAAGLTVEGDMVAGGNVENVSYGL--GVCAEVSLVSALIGSG 62
Query: 91 EPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
RL+ ++V + PCG CRQ L E ++ + + R L+ LLP
Sbjct: 63 RSRLRAVSVCDSRGVVLMPCGRCRQVLWEFGGA---DLLVDHADGPLR----LAELLPYA 115
Query: 145 FGPNDL 150
FGP+DL
Sbjct: 116 FGPDDL 121
>gi|342217147|ref|ZP_08709794.1| cytidine deaminase [Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341588037|gb|EGS31437.1| cytidine deaminase [Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 134
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S FHVGA LG +G+I+ G N+E +I AE+ I I + +Q +A
Sbjct: 17 AYVPYSHFHVGACVLGDNGKIYGGCNIETASYS--PTICAERVAIFKAISDGVQSIQAIA 74
Query: 99 VS-----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V+ PCG CRQ + E + S + + I + + ++Y L LLP F DL
Sbjct: 75 VTGDAKDTMPCGVCRQVMVEFADPS-MKVYIVNKEDDFKEY-SLEELLPFSFSKKDL 129
>gi|159117933|ref|XP_001709186.1| Cytidine deaminase [Giardia lamblia ATCC 50803]
gi|157437301|gb|EDO81512.1| Cytidine deaminase [Giardia lamblia ATCC 50803]
Length = 134
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV-- 99
P SK+ VGA L SG IF G NVE P+ + AE+ + I + + AV
Sbjct: 25 PYSKYKVGAAILTESGEIFKGCNVENAAYPI--GVCAERTAVVKAISEGKKDMVACAVVT 82
Query: 100 --SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151
+PCG CRQ L E +++ + ++ PL LLP FGP +LL
Sbjct: 83 RDGGSPCGMCRQTLNEF--NPKMHMILAKLDGEVITEMPLDELLPLGFGPANLL 134
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+P T + L AA+E + ++ PYSK G AI+ G I+KG +E+AAY +
Sbjct: 1 MPITREQRSALIKAAIEGSEHAYIPYSKYKVGAAILTESGEIFKGCNVENAAYPIGVCAE 60
Query: 235 QAALVAYLAAG 245
+ A+V ++ G
Sbjct: 61 RTAVVKAISEG 71
>gi|354477381|ref|XP_003500899.1| PREDICTED: cytidine deaminase-like [Cricetulus griseus]
Length = 147
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S+F VGA L GRIF G N+E PL + AE+ I
Sbjct: 15 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--GVCAERTAIQ 72
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+S+ +PCG CRQ ++E +D + +T + +
Sbjct: 73 KAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREF--GTDWAVYMTKPDGT-YVIRTV 129
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 130 RELLPASFGPEDL 142
>gi|283795712|ref|ZP_06344865.1| cytidine deaminase [Clostridium sp. M62/1]
gi|291077391|gb|EFE14755.1| cytidine deaminase [Clostridium sp. M62/1]
Length = 156
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
MER E E E K GL L A A P S FHV A L G +F
Sbjct: 1 MERHGMDEERKETEKENWKQGLIEAAL------GALERAYAPYSGFHVAAALLCGDGSVF 54
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA----------APCGHCRQF 110
G NVE P I AE+ + + + + +A+ APCG CRQ
Sbjct: 55 TGCNVENASYP--AGICAERSAFSAAVSSGKREFTAIAIVGGRDGKTESYCAPCGICRQV 112
Query: 111 LQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKD 154
++E + I + + ++Y L LLP+ FGP +L + KD
Sbjct: 113 MREFCRPDEFLILLARTPEDYKEY-TLEELLPESFGPENLTVSKD 156
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E EN K+ L AAL A +++APYS A++ +G+++ G +E+A+Y + ++
Sbjct: 14 EKENWKQGLIEAALGALERAYAPYSGFHVAAALLCGDGSVFTGCNVENASYPAGICAERS 73
Query: 237 ALVAYLAAG 245
A A +++G
Sbjct: 74 AFSAAVSSG 82
>gi|374606357|ref|ZP_09679236.1| cytidine deaminase [Paenibacillus dendritiformis C454]
gi|374388063|gb|EHQ59506.1| cytidine deaminase [Paenibacillus dendritiformis C454]
Length = 152
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S+F VGA L + G+IF G NVE L AE+ + + E ++
Sbjct: 31 ARKQAYAPYSRFQVGAAVL-AGGKIFRGCNVENASYGLTNC--AERTAVFKAVSEGEKKI 87
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ +AV A APCG CRQ L E + S I +++++ N ++ +S LLP F
Sbjct: 88 EAIAVVADTEGPVAPCGACRQVLAEFCD-SGTRIYLSNLHGNTEEW-TISRLLPGAFSAE 145
Query: 149 DL 150
D+
Sbjct: 146 DM 147
>gi|407642258|ref|YP_006806017.1| cytidine deaminase [Nocardia brasiliensis ATCC 700358]
gi|407305142|gb|AFT99042.1| cytidine deaminase [Nocardia brasiliensis ATCC 700358]
Length = 133
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA L + GRI G NVE L ++ AE LI NL RL LAV
Sbjct: 23 PYSRFPVGAAALSADGRIVRGCNVENVSYGL--TLCAECVLIGNLHSGGGGRLLALAVCD 80
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+ PCG CRQ L E + ++ + N R L+ LLPD FGP+DL
Sbjct: 81 SRGEILMPCGRCRQLLYEHGGS---DLLVDHRNGPVR----LAALLPDAFGPDDL 128
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+PE + + L+ A++ ++ PYS+ P G A + +G I +G +E+ +Y +L
Sbjct: 1 MPEID--WKSLRDNAIQVMRNAYVPYSRFPVGAAALSADGRIVRGCNVENVSYGLTL-CA 57
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
+ L+ L +GG G R++A A+ + ++ R LL
Sbjct: 58 ECVLIGNLHSGGGG-------RLLALAVCDSRGEILMPCGRCRQLL 96
>gi|159901099|ref|YP_001547346.1| cytidine deaminase [Herpetosiphon aurantiacus DSM 785]
gi|159894138|gb|ABX07218.1| cytidine deaminase [Herpetosiphon aurantiacus DSM 785]
Length = 135
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K+A+ A P S+F VGA L +SG+IF G N+E P+ + AE+ + E
Sbjct: 13 KTARERAYTPYSRFKVGAAVLTASGQIFHGCNIENAAYPV--CLCAERSALAAAWSAGET 70
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A APCG CRQF+ EL D+ + + ++ + P LLP F
Sbjct: 71 EFIALAVVADTPGPVAPCGMCRQFMFEL--APDLPVLLANLAEQTQHTTP-RELLPGGFS 127
Query: 147 PNDL 150
P L
Sbjct: 128 PESL 131
>gi|160903259|ref|YP_001568840.1| cytidine deaminase [Petrotoga mobilis SJ95]
gi|160360903|gb|ABX32517.1| cytidine deaminase [Petrotoga mobilis SJ95]
Length = 132
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T+++ L A+ A P S F VGA L G IF G NVE L SI AE+
Sbjct: 5 TIVEKLYEEAMKARENAYAPYSNFKVGACLLSDDGEIFSGCNVENASYGL--SICAERNA 62
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I + + + + + V A PCG CRQ + E D ++ + + K
Sbjct: 63 IFSAVAKGKREFKAMLVVAEGEAPVKPCGACRQVMAEF---GDFDVYLANTKGKIEKTR- 118
Query: 137 LSHLLPDRFGPNDL 150
+S LLP+ F P DL
Sbjct: 119 VSELLPNAFSPKDL 132
>gi|304439781|ref|ZP_07399679.1| cytidine deaminase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371768|gb|EFM25376.1| cytidine deaminase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 132
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+ + +L+ + + + + P SKF+VG G ++ GGN+E + +I AE+
Sbjct: 1 MEIKKLIELALDAKEKMTYTPYSKFNVGCAVEMEDGSVYQGGNIEI--VSYSPTICAERV 58
Query: 82 LITNLILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I + ++ + ++ PCG CRQ ++E + D I I + + RK+
Sbjct: 59 AIFKAVSEGHREIKKIVITGDNKDTFPCGVCRQVIREF--SKDPEIIIANSTEDYRKF-T 115
Query: 137 LSHLLPDRFGPNDL 150
L +LP FGP +L
Sbjct: 116 LEEILPHSFGPEEL 129
>gi|453330815|dbj|GAC87142.1| cytidine deaminase [Gluconobacter thailandicus NBRC 3255]
Length = 130
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
A++ A P S++ VGA L G I+ G NVE PL AE ++ ++L R
Sbjct: 11 DARSRAYAPYSRYQVGAA-LRCDGVIYSGCNVENAAYPLGTC--AEGGAVSAMVLGGGQR 67
Query: 94 LQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
++ + + PCG CRQ L+E D+ + + S L+ LLPD FGP
Sbjct: 68 IEEIVIVGGGDQPCTPCGGCRQKLREF-GQPDLKVHMISSTGKLLLTRTLADLLPDAFGP 126
Query: 148 NDL 150
++L
Sbjct: 127 DNL 129
>gi|87120433|ref|ZP_01076328.1| hypothetical protein MED121_09578 [Marinomonas sp. MED121]
gi|86164536|gb|EAQ65806.1| hypothetical protein MED121_09578 [Marinomonas sp. MED121]
Length = 136
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L A + A P S+F VGAV +G+++ G NVE P + AE I+ ++L+
Sbjct: 13 LANKAMSKAYVPYSEFKVGAVIETLNGKVYSGCNVENAAYP--EGTCAEAGAISAMVLDG 70
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
E ++ ++ V PCG CRQ ++E +T D I I RK + LLP
Sbjct: 71 EQKIDNIYVLGNGEQLVTPCGGCRQKIREF-STPDTQIHICG-PEGVRKTLSMEELLPFS 128
Query: 145 FGPNDL 150
FGP +L
Sbjct: 129 FGPENL 134
>gi|407769442|ref|ZP_11116817.1| cytidine deaminase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407287364|gb|EKF12845.1| cytidine deaminase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 139
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA--- 98
P SKFHVGA G+I G NVE P + + AE I+ ++L+ E + +
Sbjct: 27 PYSKFHVGAALRTERGQIIAGCNVENAAYP--EGVCAEAGAISAMVLSGETKFDEIVVVG 84
Query: 99 ---VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS--HLLPDRFGPNDL 150
V+ PCG CRQ ++E SD I I IN + L+ L+P FGP +L
Sbjct: 85 LGDVACTPCGGCRQKIREFTG-SDATIYI--INDAGKTLLTLTREELIPHSFGPENL 138
>gi|399046966|ref|ZP_10739154.1| cytidine deaminase, homotetrameric [Brevibacillus sp. CF112]
gi|433545481|ref|ZP_20501834.1| cytidine deaminase [Brevibacillus agri BAB-2500]
gi|398055116|gb|EJL47208.1| cytidine deaminase, homotetrameric [Brevibacillus sp. CF112]
gi|432183136|gb|ELK40684.1| cytidine deaminase [Brevibacillus agri BAB-2500]
Length = 132
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ LA P SKF VGA L SG ++LGGN+E L AE+ + +
Sbjct: 13 ARELAYVPYSKFQVGAALLCESGNVYLGGNIENAAYSLCNC--AERTALFKAFSERDRTY 70
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ LAV+A +PCG CRQ + EL D+ + +T++ + + +S LLP F
Sbjct: 71 KALAVAADTPGPVSPCGACRQVIAEL-CPQDMPVYLTNLKGDVEE-TTVSALLPGAFSKE 128
Query: 149 DL 150
DL
Sbjct: 129 DL 130
>gi|320170664|gb|EFW47563.1| cytidine deaminase [Capsaspora owczarzaki ATCC 30864]
Length = 142
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+A+T A P S F VGA +SGRIF G NVE L +I AE+ + +
Sbjct: 17 TAKTFAYAPYSNFRVGAALRTTSGRIFTGCNVENSSYGL--AICAERTALVKAVSEGFRE 74
Query: 94 LQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ V+ +PCG CRQF+ E +++C +S + +LPD F
Sbjct: 75 FTDICVTTDLTDKFCSPCGACRQFIVEFGLDITVHLCKPDGSS---QITTSGRILPDAFT 131
Query: 147 PNDL-LDK 153
P DL LD+
Sbjct: 132 PADLKLDR 139
>gi|363751705|ref|XP_003646069.1| hypothetical protein Ecym_4176 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889704|gb|AET39252.1| hypothetical protein Ecym_4176 [Eremothecium cymbalariae
DBVPG#7215]
Length = 152
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR- 93
++ L+ P S F VG G+ G NVE SI AE+ + +++
Sbjct: 27 SRELSYSPYSSFRVGCCIQTKCGKYISGSNVE--NASYGASICAERTAVVRAVMDGHTDD 84
Query: 94 LQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+A+S +PCG CRQ L+E N + + + + +R+ L LLPD FG
Sbjct: 85 WACIAISGDSLQQCISPCGICRQVLREFTNPKTFPVVMLNGDGTKRRLMTLEELLPDSFG 144
Query: 147 PNDL 150
P+DL
Sbjct: 145 PDDL 148
>gi|308162694|gb|EFO65075.1| Cytidine deaminase [Giardia lamblia P15]
Length = 134
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV-- 99
P SK+ VGA L SG IF G NVE P+ + AE+ + + + + AV
Sbjct: 25 PYSKYRVGAAILTKSGEIFRGCNVENAAYPI--GVCAERTAVVKAVSEGKKDIVACAVVT 82
Query: 100 --SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151
+PCG CRQ L E +++ + ++ + PL LLP FGP +LL
Sbjct: 83 RDGGSPCGMCRQTLNEF--NPKMHMILAKLDGDIITEMPLDELLPLGFGPANLL 134
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
T + L AA+E + ++ PYSK G AI+ G I++G +E+AAY + + A
Sbjct: 4 TREQRSDLIKAAIEGSEHAYIPYSKYRVGAAILTKSGEIFRGCNVENAAYPIGVCAERTA 63
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKE 266
+V ++ G + IVA A+V ++
Sbjct: 64 VVKAVSE--------GKKDIVACAVVTRD 84
>gi|198437561|ref|XP_002124294.1| PREDICTED: similar to Cytidine deaminase [Ciona intestinalis]
Length = 139
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T + L L A+ A P SKF VGA + +G +F G NVE P+ + AE+
Sbjct: 9 TTPEALIALAVEAKQRAYCPYSKFQVGAAVVVENGDVFTGCNVENACYPV--GVCAERTA 66
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I + +++ LA+++ PCG CRQ ++E I C + S E H
Sbjct: 67 ICKAVSEGHRKVEILALTSNADTMTYPCGLCRQTIREFGTEVTI-YCASKDGSYET--HD 123
Query: 137 LSHLLPDRFGPNDL 150
L+ +LP FGP L
Sbjct: 124 LNEMLPLSFGPESL 137
>gi|449275886|gb|EMC84622.1| Cytidine deaminase, partial [Columba livia]
Length = 133
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQLL + A+ A P S+F VGA L + G IF G NVE L + AE+ I
Sbjct: 3 LQLLLRRSQEAKHSAYCPYSRFPVGAALLTAGGEIFSGCNVENACYSL--GVCAERTAIL 60
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+++ PCG CRQ ++E +D +I +T + L
Sbjct: 61 KAISEGHTSFRAMAIASDMGDNFIVPCGACRQMMREF--GTDWDIYLTKADGT-YIVKRL 117
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 118 EELLPLSFGPEDL 130
>gi|371535227|gb|AEX32920.1| cytidine deaminase [Hypophthalmichthys nobilis]
Length = 154
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P SKF VGA L G +F G NVE L + AE+ I+ +
Sbjct: 26 AKKFAYCPYSKFRVGAALLTHDGTVFTGCNVENACFNL--GLCAERTAISKAVSEGYTDF 83
Query: 95 QHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ +A+++ +PCG CRQF++E D+ + S + LLP FGP
Sbjct: 84 KAIAIASDMCEHFISPCGGCRQFMREFGANWDVYL---SKPDGSYVEMTVEELLPASFGP 140
Query: 148 NDLLDKDVPL 157
DL K V +
Sbjct: 141 EDLRVKKVNI 150
>gi|409389407|ref|ZP_11241259.1| cytidine deaminase [Gordonia rubripertincta NBRC 101908]
gi|403200699|dbj|GAB84493.1| cytidine deaminase [Gordonia rubripertincta NBRC 101908]
Length = 150
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S++ VGA G+ S GR+ G NVE L I AE L+ LI L+ +
Sbjct: 37 AYAPYSQYPVGAAGVTSDGRVVAGCNVENVSYGL--GICAEVSLVAQLISQGGKSLRAVT 94
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V+ A PCG CRQ L E D+ + + PL LLPD FGP+D+
Sbjct: 95 VTDASGKVLMPCGRCRQVLFE-HGGRDLLV------DHPAGPRPLVELLPDAFGPDDI 145
>gi|182414472|ref|YP_001819538.1| cytidine deaminase [Opitutus terrae PB90-1]
gi|177841686|gb|ACB75938.1| cytidine deaminase [Opitutus terrae PB90-1]
Length = 135
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV-- 99
P SKF VGA L SSG +F G NVE L AE+ I + E ++ +AV
Sbjct: 25 PYSKFPVGAAVLTSSGHVFTGCNVENASYGLCNC--AERTAIFSAAAAGERAIKAVAVYT 82
Query: 100 ----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+ +PCG CRQ + E T+ + I+ + ++R L LLP FGP +L
Sbjct: 83 PTPTATSPCGACRQVINEFGPTA---LVISVCDGSDRIETTLDQLLPHAFGPGNL 134
>gi|441508744|ref|ZP_20990667.1| cytidine deaminase [Gordonia aichiensis NBRC 108223]
gi|441447185|dbj|GAC48628.1| cytidine deaminase [Gordonia aichiensis NBRC 108223]
Length = 152
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 6 FVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLG 62
F I + ++ ++S LT L SA + A P S F VGA GL GRI +G
Sbjct: 4 FRITQSPIPTVCEESALTHAIEWKLLRDSAADMIPRAYAPYSAFPVGASGLTDDGRIVVG 63
Query: 63 GNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRN 116
NVE + I AE L+ ++ + RL+ ++V A PCG CRQ L E
Sbjct: 64 CNVE--NVSYGLGICAEVGLVAAMVASGGGRLRAVSVCDATGSVLMPCGRCRQVLYE-HG 120
Query: 117 TSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
++ + + L+ LLPD FGP+DL
Sbjct: 121 GGELLV------DHRSGPTTLAALLPDAFGPDDL 148
>gi|377570513|ref|ZP_09799655.1| cytidine deaminase [Gordonia terrae NBRC 100016]
gi|377532309|dbj|GAB44820.1| cytidine deaminase [Gordonia terrae NBRC 100016]
Length = 134
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+L KS A P S++ VGA G+ + GR+ G NVE L I AE L+
Sbjct: 7 WDVLRDKAKSMIDRAYAPYSRYPVGAAGITAEGRVIAGCNVENVSYGL--GICAEVALVA 64
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L+ + L+ ++V A PCG CRQ L E + + PL+
Sbjct: 65 ALVNGGDRALRAVSVCDARGVVLMPCGRCRQVLLEHGGRE-------LLVDHPAGPRPLA 117
Query: 139 HLLPDRFGPNDL 150
LLPD FGP+DL
Sbjct: 118 ALLPDAFGPDDL 129
>gi|333892890|ref|YP_004466765.1| Cytidine deaminase [Alteromonas sp. SN2]
gi|332992908|gb|AEF02963.1| Cytidine deaminase [Alteromonas sp. SN2]
Length = 135
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 28 LPTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L++ AQ + + P S F VGA L SG IF G NVE PL Q AE I
Sbjct: 6 IKKLIEQAQEVQQHSHSPYSDFKVGAAVLTESGDIFAGCNVESAAYPLSQC--AEASAIG 63
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
N++ + R+ + V++ PCG CRQ + E D + S + +
Sbjct: 64 NMVSHGHKRIHSIVVASQNDEFCFPCGGCRQKIAEF--APDDTPVVMVTKSGKTHETTIG 121
Query: 139 HLLPDRFGPNDL 150
LLP+ F +DL
Sbjct: 122 ELLPNAFRAHDL 133
>gi|344283429|ref|XP_003413474.1| PREDICTED: cytidine deaminase-like [Loxodonta africana]
Length = 146
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G NVE
Sbjct: 1 MAQKGPARALEPEHVQRLLLSCREAKKTAYCPYSHFPVGAALLTGDGRIFSGCNVENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL ++ AE+ I I + +A+++ +PCG CRQ ++E +D +
Sbjct: 61 PL--AVCAERTAIQKAISEGYKDFRAIAIASDLQDDFISPCGACRQVMREF--GTDWAVY 116
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+T + + LLP FGP DL
Sbjct: 117 MTKPDGT-YIVRTVKELLPASFGPEDL 142
>gi|320583217|gb|EFW97432.1| cytidine aminohydrolase, putative cytidine deaminase, putative
[Ogataea parapolymorpha DL-1]
Length = 136
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQ L + + A P S FHVG L ++G F G NVE +I AE+
Sbjct: 7 LQTLKERALANRAKAYCPYSNFHVGCCLL-ANGEFFDGANVE--NASYGGAICAERTAAV 63
Query: 85 NLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ R + +A+S +PCG CRQFL+E S +++ I N + K L+
Sbjct: 64 AAVTQGRTRFEAVAISGDLDTCISPCGICRQFLREF---SALDVPIYMYNKDGSKVEKLT 120
Query: 139 --HLLPDRFGPNDL 150
+LP FGP DL
Sbjct: 121 MNEILPQSFGPADL 134
>gi|441511685|ref|ZP_20993534.1| cytidine deaminase [Gordonia amicalis NBRC 100051]
gi|441453665|dbj|GAC51495.1| cytidine deaminase [Gordonia amicalis NBRC 100051]
Length = 134
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 33 KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
++ + L+R P S + VGA G+ S GR+ G NVE L I AE L+ LI
Sbjct: 13 RATEMLSRAYAPYSHYPVGAAGVTSEGRVVAGCNVENVSYGL--GICAEVALVAQLISQG 70
Query: 91 EPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ L+ + V+ A PCG CRQ L E + + PLS LLPD
Sbjct: 71 DRSLRAVTVTDASGKILMPCGRCRQVLLEHGGRE-------LLVDHPAGPRPLSDLLPDA 123
Query: 145 FGPNDL 150
FGP+D+
Sbjct: 124 FGPDDI 129
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
TE P L++ A E ++++APYS P G A + EG + G +E+ +Y + + A
Sbjct: 3 TEIPWNVLRHRATEMLSRAYAPYSHYPVGAAGVTSEGRVVAGCNVENVSYGLGIC-AEVA 61
Query: 238 LVAYLAAGGS 247
LVA L + G
Sbjct: 62 LVAQLISQGD 71
>gi|433457209|ref|ZP_20415219.1| cytidine deaminase [Arthrobacter crystallopoietes BAB-32]
gi|432195176|gb|ELK51731.1| cytidine deaminase [Arthrobacter crystallopoietes BAB-32]
Length = 135
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SK+ VGA L GRI G NVE L ++ AE L++ L +
Sbjct: 20 REAMERAYVPYSKYPVGAAALTEDGRIVAGCNVENASYGL--TLCAECSLVSQLHMTGGG 77
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
RL + PCG CRQ L E R + + ++ + + + +LPD FG
Sbjct: 78 RLAAFSCVDGEGNVLMPCGRCRQLLYEFRAPGMVLLTVSGVRT-------MDEVLPDAFG 130
Query: 147 PNDL 150
P +L
Sbjct: 131 PENL 134
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L AA EA +++ PYSK P G A + +G I G +E+A+Y +L + +LV+ L
Sbjct: 15 LLQAAREAMERAYVPYSKYPVGAAALTEDGRIVAGCNVENASYGLTLC-AECSLVSQLHM 73
Query: 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
G G R+ A + V+ E V+ R LL
Sbjct: 74 TGGG-------RLAAFSCVDGEGNVLMPCGRCRQLL 102
>gi|333909385|ref|YP_004482971.1| cytidine deaminase [Marinomonas posidonica IVIA-Po-181]
gi|333479391|gb|AEF56052.1| cytidine deaminase [Marinomonas posidonica IVIA-Po-181]
Length = 135
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L K+A + A P S F VGA L SG ++ G NVE P + AE I ++ +
Sbjct: 13 LAKNAMSQAYVPYSHFTVGAAILTVSGELYSGCNVENASYP--EGTCAEAGAIAAMVRDG 70
Query: 91 EPRLQHLAVSA------APCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPD 143
+ +++ + V PCG CRQ ++E +T I+IC RK + LLP
Sbjct: 71 QTQIKEIYVMGEGEALVTPCGGCRQRIREFSSTDTMIHICGP---EGVRKSLTMDELLPF 127
Query: 144 RFGPNDL 150
FGP +L
Sbjct: 128 SFGPENL 134
>gi|299144156|ref|ZP_07037236.1| cytidine deaminase [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518641|gb|EFI42380.1| cytidine deaminase [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 135
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ +++ + P S F VGA G ++ GGN+E AE+ I
Sbjct: 5 KLIELAIEAKNNSSYTPYSNFRVGAAVEMEDGSVYKGGNIEIASYSPTNC--AERTAIFT 62
Query: 86 LILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNER-KYHPLSH 139
I + +++ +A+ PCG CRQ ++E +N I NS ER K L
Sbjct: 63 AISEGKRKIKKIAIVGDAEYTFPCGVCRQVIREF----GVNAKIIIANSVERYKVFTLEE 118
Query: 140 LLPDRFGPNDL 150
LLP FGP DL
Sbjct: 119 LLPYSFGPEDL 129
>gi|157371870|ref|YP_001479859.1| cytidine deaminase [Serratia proteamaculans 568]
gi|157323634|gb|ABV42731.1| cytidine deaminase [Serratia proteamaculans 568]
Length = 142
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q + A+ + P S F VGA + SG++F G NVE + + AE+ I
Sbjct: 7 IQEMIAAASQAREFSYAPYSNFTVGAALITKSGKVFTGCNVE--SVSYSPTTCAERVAIL 64
Query: 85 NLILNAEPRLQHLAV-------------SAAPCGHCRQFLQELRNTSDINICITSINSNE 131
+ E + + V + PCG CRQ + E DI I I + + +E
Sbjct: 65 KAVSEGERSFEMIVVIGGPRVGESKAKGYSGPCGVCRQMIYEFGK--DIQIIIAN-SLDE 121
Query: 132 RKYHPLSHLLPDRFGPNDLL 151
H +S L P FGP+ LL
Sbjct: 122 YYVHDISELFPLGFGPDHLL 141
>gi|210076983|gb|ACJ06779.1| cytidine deaminase [Geobacillus stearothermophilus]
Length = 132
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ A P SKF VGA L G ++ G N+E + AE+ + E
Sbjct: 11 KKAREFAYVPYSKFKVGAALLTKDGSVYRGCNIENAAYSVCNC--AERIALFKAYSEGET 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A PCG CRQ + EL SD+ + + +IN + K + LLPD F
Sbjct: 69 EFAALAVIADTPRPVPPCGACRQVIAEL-CPSDMKVILANINGD-VKIVTVQELLPDAFS 126
Query: 147 PNDL 150
D+
Sbjct: 127 AEDM 130
>gi|345859664|ref|ZP_08812001.1| cytidine deaminase [Desulfosporosinus sp. OT]
gi|344327260|gb|EGW38701.1| cytidine deaminase [Desulfosporosinus sp. OT]
Length = 147
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 26 QLLPTLVKSAQTLARP---PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
Q+L L+ AQ R P S + VGA L SSG I+ G NVE L ++ AE+
Sbjct: 16 QVLQELIDQAQAAYRQAYVPYSHYPVGAAALFSSGVIYGGCNVENASYGL--TVCAERNA 73
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSIN-SNERKYH 135
I + + E L+ +A++ +PCG CRQ ++E ++ + IN + K
Sbjct: 74 IFQAVAHGERELKGIAIAVPTDVFPSPCGACRQVIREFA----VDCPVILINGEGKTKVT 129
Query: 136 PLSHLLPDRFGPNDLLD 152
L LLPD FGP + D
Sbjct: 130 RLKTLLPDAFGPEFVSD 146
>gi|58037289|ref|NP_082452.1| cytidine deaminase [Mus musculus]
gi|62296704|sp|P56389.2|CDD_MOUSE RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase
gi|99031657|pdb|1ZAB|A Chain A, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With 3-Deazauridine
gi|99031658|pdb|1ZAB|B Chain B, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With 3-Deazauridine
gi|99031659|pdb|1ZAB|C Chain C, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With 3-Deazauridine
gi|99031660|pdb|1ZAB|D Chain D, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With 3-Deazauridine
gi|112490584|pdb|2FR5|A Chain A, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Tetrahydrouridine
gi|112490585|pdb|2FR5|B Chain B, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Tetrahydrouridine
gi|112490586|pdb|2FR5|C Chain C, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Tetrahydrouridine
gi|112490587|pdb|2FR5|D Chain D, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Tetrahydrouridine
gi|112490590|pdb|2FR6|A Chain A, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Cytidine
gi|112490591|pdb|2FR6|B Chain B, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Cytidine
gi|112490592|pdb|2FR6|C Chain C, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Cytidine
gi|112490593|pdb|2FR6|D Chain D, Crystal Structure Of Mouse Cytidine Deaminase Complexed
With Cytidine
gi|12843205|dbj|BAB25898.1| unnamed protein product [Mus musculus]
gi|29747846|gb|AAH50114.1| Cytidine deaminase [Mus musculus]
gi|148681316|gb|EDL13263.1| cytidine deaminase [Mus musculus]
Length = 146
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S+F VGA L GRIF G N+E PL + AE+ I
Sbjct: 15 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPL--GVCAERTAIQ 72
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+S+ +PCG CRQ ++E +D + +T + +
Sbjct: 73 KAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREF--GTDWAVYMTKPDGT-FVVRTV 129
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 130 QELLPASFGPEDL 142
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
+RL ++ EA ++ PYS+ P G A++ +G I+ G +E+A Y
Sbjct: 16 QRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60
>gi|374997404|ref|YP_004972903.1| cytidine deaminase [Desulfosporosinus orientis DSM 765]
gi|357215770|gb|AET70388.1| cytidine deaminase, homotetrameric [Desulfosporosinus orientis DSM
765]
Length = 151
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 12 EAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLP 71
E E + QKS L +++ T+ + A P S + VGA + SSG+I+ G NVE
Sbjct: 15 EIEGLDQKSILELIEQAKTVYEQAYA----PYSHYPVGAAAVFSSGKIYSGCNVENASYG 70
Query: 72 LHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICIT 125
L ++ AE+ I + E L+ +A++ +PCG CRQ ++E +D + +
Sbjct: 71 L--TVCAERNAIFQAVAQGERELKGVAIAVPGDGFPSPCGACRQVIREF--AADCPVILV 126
Query: 126 SINSNERKYHPLSHLLPDRFGPN 148
+ E + L+ LLP+ FGP
Sbjct: 127 N-GRGEVRLTSLNVLLPEGFGPE 148
>gi|299821344|ref|ZP_07053232.1| cytidine deaminase [Listeria grayi DSM 20601]
gi|299817009|gb|EFI84245.1| cytidine deaminase [Listeria grayi DSM 20601]
Length = 131
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ A P S F VGA + G + G N+E L AE+ I + E
Sbjct: 11 KQAREFAYTPYSHFPVGAALVTKDGEVIQGCNIENASFGLTNC--AERTAIFKAVSTGEK 68
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
QHL V A APCG CRQ + E D+ + +T++ N + ++ LLP F
Sbjct: 69 DFQHLVVVADTEGPVAPCGACRQVISEFCE-PDMPVTLTNLKGNTVQTT-VAELLPGAFT 126
Query: 147 PNDL 150
P DL
Sbjct: 127 PKDL 130
>gi|418404701|ref|ZP_12978148.1| cytidine deaminase [Sinorhizobium meliloti CCNWSX0020]
gi|359501329|gb|EHK73944.1| cytidine deaminase [Sinorhizobium meliloti CCNWSX0020]
Length = 131
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA GRI+ G N+E P + AE I+++++ +
Sbjct: 11 REAMAKAHAPYSKFPVGAAIRAEDGRIYTGANIENLSFP--EGWCAETTAISHMVMAGQR 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ L E S I +C + RK LS LLP F
Sbjct: 69 KITEVAVVAEKLALCPPCGGCRQRLAEFSGASTRIYLC---DETGIRKTLALSDLLPHSF 125
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K+ L AA EA K+HAPYSK P G AI +G IY G+ +E+ ++
Sbjct: 3 KDELFVAAREAMAKAHAPYSKFPVGAAIRAEDGRIYTGANIENLSF 48
>gi|256832066|ref|YP_003160793.1| cytidine deaminase [Jonesia denitrificans DSM 20603]
gi|256685597|gb|ACV08490.1| cytidine deaminase [Jonesia denitrificans DSM 20603]
Length = 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLAR---PPISKFHVGAVGLGSSGRIFLGGNVEFPGLPL 72
M L + LV AQ + + P S + VGA + + GRI G NVE G +
Sbjct: 1 MTHADDLAAVVDWNQLVAQAQKMTKMSYVPYSHYPVGAAAITTDGRIVSGCNVENAGYGV 60
Query: 73 HQSIHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITS 126
++ AE LI+ LI L PCG CRQ L E N+ + +
Sbjct: 61 --TLCAECGLISELIATGGGTLAAFVCVNGQGEVIMPCGRCRQLLWEHGGP---NLVLDT 115
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLD 152
++ Y ++ +LPD FGP+DL D
Sbjct: 116 VSG----YRTMAQVLPDAFGPSDLDD 137
>gi|194207937|ref|XP_001504385.2| PREDICTED: cytidine deaminase-like [Equus caballus]
Length = 145
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
V QLL + + A+ A P S F VGA L GRIF G N+E PL I AE+ I
Sbjct: 15 VQQLLLS-CQEAKKSAYCPYSHFPVGAALLTLDGRIFSGCNIENACYPL--GICAERTAI 71
Query: 84 TNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + +A+++ +PCG CRQ ++E D+ +T ++
Sbjct: 72 QKAVSEGYKDFKAIAIASDLQDDFISPCGACRQVMREFGTNWDVY--MTKLDGT-YVVKT 128
Query: 137 LSHLLPDRFGPNDL 150
+ LLP FGP DL
Sbjct: 129 VQELLPASFGPQDL 142
>gi|296450135|ref|ZP_06891896.1| cytidine deaminase [Clostridium difficile NAP08]
gi|296878516|ref|ZP_06902521.1| cytidine deaminase [Clostridium difficile NAP07]
gi|296260898|gb|EFH07732.1| cytidine deaminase [Clostridium difficile NAP08]
gi|296430323|gb|EFH16165.1| cytidine deaminase [Clostridium difficile NAP07]
Length = 140
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L + A+ + P S F VGA L SG+++ G N+E L AE+ I I
Sbjct: 13 LLRLAEDARQHSYAPYSSFRVGAALLTKSGKVYTGCNIECASLGGTNC--AERTAIFKAI 70
Query: 88 LNAEPRLQHLAVSAA---------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + +A+++ PCG CRQ + E SDI I IT E H +
Sbjct: 71 SEGDKDIYKIAIASDNSENNEQTYPCGICRQVIIEF--GSDIKI-ITGYTKGEVFEHDIK 127
Query: 139 HLLPDRFGPNDL 150
LLP+ F NDL
Sbjct: 128 DLLPNYFSGNDL 139
>gi|326334080|ref|ZP_08200308.1| cytidine deaminase [Nocardioidaceae bacterium Broad-1]
gi|325948131|gb|EGD40243.1| cytidine deaminase [Nocardioidaceae bacterium Broad-1]
Length = 137
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S F VG G+ GR+ G NVE + ++ AE L+++L + +L H+
Sbjct: 28 AYAPYSNFSVGVAGIADDGRLLQGCNVENAAYGV--TLCAECGLVSSLHMTGGGKLTHVV 85
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L E + + ++ + P+S +LPD FGP L
Sbjct: 86 CVNGSGEVIMPCGRCRQLLWENGGAELLLMTVSGVK-------PMSEVLPDAFGPEAL 136
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L+ A+EAA ++APYS GVA + +G + +G +E+AAY +L + LV+ L
Sbjct: 15 EGLRAQAVEAAKHAYAPYSNFSVGVAGIADDGRLLQGCNVENAAYGVTL-CAECGLVSSL 73
Query: 243 AAGGSG 248
G G
Sbjct: 74 HMTGGG 79
>gi|407700002|ref|YP_006824789.1| Cytidine deaminase [Alteromonas macleodii str. 'Black Sea 11']
gi|407249149|gb|AFT78334.1| Cytidine deaminase [Alteromonas macleodii str. 'Black Sea 11']
Length = 157
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L+ L L AQ + P S F VGA L SG F G NVE PL Q AE I
Sbjct: 28 LEKLSQLAFDAQKNSHSPYSNFKVGAAVLTPSGETFSGCNVESAAFPLGQC--AEATAIG 85
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYH-PL 137
N++ + R+ H+ +++ PCG CRQ + E + +T ++ + + +
Sbjct: 86 NMVTQGQNRIAHIVIASPNDEFCFPCGGCRQKIAEF---APDETPVTMVSQTGQVFETTI 142
Query: 138 SHLLPDRFGPNDL 150
LLP+ F +DL
Sbjct: 143 GELLPNAFRAHDL 155
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
Q+ +N E+L A +A SH+PYS G A++ G + G +ESAA+
Sbjct: 20 QVAMKKNNLEKLSQLAFDAQKNSHSPYSNFKVGAAVLTPSGETFSGCNVESAAF 73
>gi|45387777|ref|NP_991242.1| cytidine deaminase [Danio rerio]
gi|41107631|gb|AAH65476.1| Cytidine deaminase [Danio rerio]
Length = 159
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P SKF VGA L G +F G NVE L I AE+ I+ +
Sbjct: 29 QEAKKFAYCPYSKFRVGAALLTHDGTVFTGCNVENACFNL--GICAERVAISKAVSEGYR 86
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ +A+++ +PCG CRQF++E + ++ + S + LLP F
Sbjct: 87 DFKAIAIASDMCENFISPCGGCRQFMREFGSNWEVYL---SKPDGSYVEMTVEELLPASF 143
Query: 146 GPNDL 150
GP DL
Sbjct: 144 GPEDL 148
>gi|255656418|ref|ZP_05401827.1| cytidine deaminase [Clostridium difficile QCD-23m63]
Length = 133
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L + A+ + P S F VGA L SG+++ G N+E L AE+ I I
Sbjct: 6 LLRLAEDARQHSYAPYSSFRVGAALLTKSGKVYTGCNIECASLGGTNC--AERTAIFKAI 63
Query: 88 LNAEPRLQHLAVSAA---------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + +A+++ PCG CRQ + E SDI I IT E H +
Sbjct: 64 SEGDKDIYKIAIASDNSENNEQTYPCGICRQVIIEF--GSDIKI-ITGYTKGEVFEHDIK 120
Query: 139 HLLPDRFGPNDL 150
LLP+ F NDL
Sbjct: 121 DLLPNYFSGNDL 132
>gi|375009576|ref|YP_004983209.1| cytidine deaminase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288425|gb|AEV20109.1| Cytidine deaminase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 157
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 18 QKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIH 77
+KS L ++ L K A+ LA P SKF VGA L G ++ G N+E +
Sbjct: 21 RKSQLVEIEQLIVEAKKARELAYVPYSKFPVGAALLTKGGSVYRGCNIENAAYSVCNC-- 78
Query: 78 AEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNE 131
AE+ + E LAV A PCG CRQ + EL + D+ + + ++ +
Sbjct: 79 AERTALFKAYSEGEKEFTALAVIADTPRPVPPCGACRQVIAELCH-GDMKVILANLKGD- 136
Query: 132 RKYHPLSHLLPDRFGPNDL 150
K +S LLP+ F DL
Sbjct: 137 VKVMTVSELLPEAFSAEDL 155
>gi|389866410|ref|YP_006368651.1| cytidine deaminase [Modestobacter marinus]
gi|388488614|emb|CCH90191.1| Cytidine deaminase [Modestobacter marinus]
Length = 139
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
MAQ L L + A T A P S+F VG GL GR+ G NVE L
Sbjct: 1 MAQVPDLD-WDALRAAAREAMTHAYAPYSQFPVGVAGLVDDGRVVTGCNVENASYGL--G 57
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINS 129
+ AE ++++L RL +A PCG CRQ L E +D+ I S+
Sbjct: 58 LCAECGMVSDLARTGGGRLVAVACVGGDGQPLMPCGRCRQLLWE-HGGADMLIETVSLG- 115
Query: 130 NERKYHPLSHLLPDRFGPNDLL 151
+ +LPD FGP DL+
Sbjct: 116 ----IVMMREVLPDAFGPEDLV 133
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
Q+P+ + + L+ AA EA ++APYS+ P GVA + +G + G +E+A+Y L
Sbjct: 3 QVPDLD--WDALRAAAREAMTHAYAPYSQFPVGVAGLVDDGRVVTGCNVENASYGLGL-C 59
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALV 263
+ +V+ LA G G R+VA A V
Sbjct: 60 AECGMVSDLARTGGG-------RLVAVACV 82
>gi|289550661|ref|YP_003471565.1| Cytidine deaminase [Staphylococcus lugdunensis HKU09-01]
gi|315658156|ref|ZP_07911028.1| cytidine deaminase [Staphylococcus lugdunensis M23590]
gi|385784287|ref|YP_005760460.1| cytidine deaminase [Staphylococcus lugdunensis N920143]
gi|418413963|ref|ZP_12987179.1| cytidine deaminase [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180193|gb|ADC87438.1| Cytidine deaminase [Staphylococcus lugdunensis HKU09-01]
gi|315496485|gb|EFU84808.1| cytidine deaminase [Staphylococcus lugdunensis M23590]
gi|339894543|emb|CCB53825.1| cytidine deaminase [Staphylococcus lugdunensis N920143]
gi|410877601|gb|EKS25493.1| cytidine deaminase [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 135
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQ-FLITNLILNAE 91
+ AQ+ A P S+F VGA GR F G NVE P +I AEQ L + L +
Sbjct: 12 QKAQSNAYTPYSQFKVGAYLKTKDGRGFYGANVENASYPA--TICAEQSSLAAAIALGYQ 69
Query: 92 P-RLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
P + + V+ +PCG CRQ L+EL + D+ I +T+ N+ E + +S LLP
Sbjct: 70 PGDFESITVTVNSIKPTSPCGICRQVLKELCD-DDMPIYMTN-NTGEMRASSVSELLPFG 127
Query: 145 FGPNDL 150
F DL
Sbjct: 128 FSGKDL 133
>gi|418635808|ref|ZP_13198167.1| cytidine deaminase, partial [Staphylococcus lugdunensis VCU139]
gi|374841496|gb|EHS04968.1| cytidine deaminase, partial [Staphylococcus lugdunensis VCU139]
Length = 124
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQ-FLITNLILNAE 91
+ AQ+ A P S+F VGA GR F G NVE P +I AEQ L + L +
Sbjct: 1 QKAQSNAYTPYSQFKVGAYLKTKDGRGFYGANVENASYP--ATICAEQSSLAAAIALGYQ 58
Query: 92 P-RLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
P + + V+ +PCG CRQ L+EL + D+ I +T+ N+ E + +S LLP
Sbjct: 59 PGDFESITVTVNSIKPTSPCGICRQVLKELCD-DDMPIYMTN-NTGEMRASSVSELLPFG 116
Query: 145 FGPNDL 150
F DL
Sbjct: 117 FSGKDL 122
>gi|311069131|ref|YP_003974054.1| cytidine deaminase [Bacillus atrophaeus 1942]
gi|419820221|ref|ZP_14343833.1| cytidine/deoxycytidine deaminase [Bacillus atrophaeus C89]
gi|310869648|gb|ADP33123.1| cytidine deaminase [Bacillus atrophaeus 1942]
gi|388475633|gb|EIM12344.1| cytidine/deoxycytidine deaminase [Bacillus atrophaeus C89]
Length = 136
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ LA P SKF VGA L + G+++ G N+E L AE+ + + +
Sbjct: 13 ARDLAYVPYSKFKVGAALLTTDGKVYRGCNIENAAYSLCNC--AERTALFKAVSEGDTEF 70
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
Q AV+A +PCG CRQ + EL D+ + +T++ + K LLP F
Sbjct: 71 QMFAVAADTPGPVSPCGACRQVISEL-CKKDMLVILTNLQ-GQIKEMTAEELLPGAFSSE 128
Query: 149 DLLDK 153
DL D+
Sbjct: 129 DLHDE 133
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L AL A + ++ PYSK G A++ +G +Y+G +E+AAY+ + AL
Sbjct: 3 RQELISEALRARDLAYVPYSKFKVGAALLTTDGKVYRGCNIENAAYSLCNCAERTALFKA 62
Query: 242 LAAGGS 247
++ G +
Sbjct: 63 VSEGDT 68
>gi|443722792|gb|ELU11518.1| hypothetical protein CAPTEDRAFT_109312, partial [Capitella teleta]
Length = 134
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGG-NVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+A+ A P SKF VGA L +G I G NVE + ++ AE+ + N + +
Sbjct: 7 NARDNAYCPYSKFRVGAAVLCDNGSILSAGCNVE--NVSYGATVCAERVALFNAVSSGRT 64
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ + +A+ PCG CRQ L E SD I + S E K L +LLP F
Sbjct: 65 KFRAIAICCDILGKFKGPCGMCRQALIEF--GSDWEIYLVKPESKEWKKVDLDYLLPMAF 122
Query: 146 GPNDL 150
P DL
Sbjct: 123 TPKDL 127
>gi|315605975|ref|ZP_07881006.1| cytidine deaminase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312257|gb|EFU60343.1| cytidine deaminase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 150
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
+ A A P S F VGA GL GRI G NVE G + ++ AE ++++LI +
Sbjct: 12 VATDAMKRAYCPYSGFPVGAAGLTDDGRIVSGCNVENAGYGV--TLCAECGMVSDLIRSG 69
Query: 91 EPRLQHL------AVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
L + AV +PCG CRQ + E S C+ + P+S +LP
Sbjct: 70 GGTLVGVVAVNGDAVPVSPCGRCRQLIFEHGGPS----CLVLMPGG---VAPMSEVLPGA 122
Query: 145 FGPNDL 150
FGP+DL
Sbjct: 123 FGPHDL 128
>gi|198422784|ref|XP_002128314.1| PREDICTED: similar to Cytidine deaminase [Ciona intestinalis]
Length = 136
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
MA K T + L L A+ A P SKF VGA + +G +F G NVE P+
Sbjct: 1 MATK--YTTPEALIALADGAKQRAYCPYSKFQVGAAVVVENGDVFTGCNVENACYPV--G 56
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINS 129
+ AE+ I + +L +AV PCG CRQ ++E +D+ I
Sbjct: 57 VCAERTAICKAVSEGHTKLVAVAVITNGKTVNFPCGLCRQSIREF--GTDVTI---YCAK 111
Query: 130 NERKY--HPLSHLLPDRFGPNDLL 151
+R Y H L LLP FG +L+
Sbjct: 112 KDRSYQTHKLKELLPLSFGAENLI 135
>gi|254473812|ref|ZP_05087207.1| cytidine deaminase [Pseudovibrio sp. JE062]
gi|374329390|ref|YP_005079574.1| Cytidine deaminase [Pseudovibrio sp. FO-BEG1]
gi|211957198|gb|EEA92403.1| cytidine deaminase [Pseudovibrio sp. JE062]
gi|359342178|gb|AEV35552.1| Cytidine deaminase [Pseudovibrio sp. FO-BEG1]
Length = 134
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
++ L K+A+ A P S F VGA L S G++ G NVE P + AE
Sbjct: 1 MSAFDKLFEEAKAARETAYAPYSNFKVGAALLTSDGKVVSGCNVENGAYP--EGTCAEGG 58
Query: 82 LITNLILNAEPRLQHLAVSA-----APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I +I ++ + V A PCG CRQ L E + I I + ++ RK
Sbjct: 59 AIAAMIRGGSSKIDEVVVLADAALCTPCGGCRQKLSEFASNKQIKIHVANLE-GLRKTFT 117
Query: 137 LSHLLPDRFGPNDLLD 152
+ LLP F N+ ++
Sbjct: 118 MEELLPAGFELNEQIE 133
>gi|423092466|ref|ZP_17080270.1| cytidine deaminase [Clostridium difficile 70-100-2010]
gi|357553968|gb|EHJ35704.1| cytidine deaminase [Clostridium difficile 70-100-2010]
Length = 140
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L + A+ + P S F VGA L SG+++ G N+E L AE+ I I
Sbjct: 13 LLRLAEDARQHSYAPYSGFRVGAALLTKSGKVYTGCNIECASLGGTNC--AERTAIFKAI 70
Query: 88 LNAEPRLQHLAVSAA---------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + +A+++ PCG CRQ + E SDI I IT E H +
Sbjct: 71 SEGDKDIYKIAIASDNSENNEQTYPCGICRQVIIEF--GSDIKI-ITGYTKGEVFEHSIK 127
Query: 139 HLLPDRFGPNDL 150
LLP+ F NDL
Sbjct: 128 DLLPNYFSGNDL 139
>gi|85720001|gb|ABC75569.1| cytidine deaminase [Ictalurus punctatus]
Length = 114
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA-- 101
SKF VGA L G +F G NVE L L I AEQ I+ + + + +A+S+
Sbjct: 1 SKFRVGAALLTQDGTVFTGCNVENVCLTL--GICAEQVAISKAVSAGHRKFKAIAISSDM 58
Query: 102 -----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+PCG CRQ ++E ++ + S K ++ LLP+ FGP DL
Sbjct: 59 VDNFISPCGGCRQVMREFGLQWEVYM---SKPDGSFKKMTVNDLLPESFGPEDL 109
>gi|320532252|ref|ZP_08033114.1| cytidine deaminase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320135528|gb|EFW27614.1| cytidine deaminase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 144
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T Q L L A T A P S+F VGA L GR+ G NVE G + ++ AE L
Sbjct: 12 THWQALRELAVDAMTRAYAPYSRFKVGAAALVDDGRLVSGCNVENAGYGV--TLCAECGL 69
Query: 83 ITNLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
++ LI RL A + APCG CRQ L E + +D + +
Sbjct: 70 VSELIRTGGGRLVAFACVDAHGRALAPCGRCRQLLSE--HAAD-----GLVLAMPSGMMS 122
Query: 137 LSHLLPDRFGPNDL 150
+ +LPDRF D+
Sbjct: 123 IDEVLPDRFTAADV 136
>gi|340508487|gb|EGR34179.1| hypothetical protein IMG5_021320 [Ichthyophthirius multifiliis]
Length = 155
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
+ Q + + + + + P SKFHVG++ + + + ++G NVE L SI AE+ I
Sbjct: 18 IKQYINEVRQIKEEYSYAPYSKFHVGSLVIDQNDKKYIGVNVENASYGL--SICAERNAI 75
Query: 84 TNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ +++ + V+ +PCG CRQ + E + I IC SNE+ + +
Sbjct: 76 FTGVSQGLKKIKLIVVNCNTIKVGSPCGACRQVIAEFSDDKTIIIC-----SNEQDQYEI 130
Query: 138 SHL---LPDRFGPNDL 150
+ L LP F P DL
Sbjct: 131 TDLQGILPGAFTPKDL 146
>gi|452952264|gb|EME57699.1| cytidine deaminase [Amycolatopsis decaplanina DSM 44594]
Length = 132
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
V++A++ A P S HVG G+ GRI +G NVE L + AE + L L
Sbjct: 14 VEAAKS-AYAPYSGLHVGVAGVVDDGRIVVGCNVENASYGL--GMCAECTMAGQLRLTGG 70
Query: 92 PRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+L +A + PCG CRQ L E SD C+ S P+S +LPD F
Sbjct: 71 GKLVAVACRSGAGDLLMPCGRCRQILFE-HGGSD---CLVDTPSG---ILPMSAVLPDAF 123
Query: 146 GPNDL 150
GP+DL
Sbjct: 124 GPDDL 128
>gi|126700054|ref|YP_001088951.1| cytidine deaminase (Cytidine aminohydrolase) (CDA) [Clostridium
difficile 630]
gi|254976031|ref|ZP_05272503.1| cytidine deaminase [Clostridium difficile QCD-66c26]
gi|255093419|ref|ZP_05322897.1| cytidine deaminase [Clostridium difficile CIP 107932]
gi|255101597|ref|ZP_05330574.1| cytidine deaminase [Clostridium difficile QCD-63q42]
gi|255307466|ref|ZP_05351637.1| cytidine deaminase [Clostridium difficile ATCC 43255]
gi|255315164|ref|ZP_05356747.1| cytidine deaminase [Clostridium difficile QCD-76w55]
gi|255517833|ref|ZP_05385509.1| cytidine deaminase [Clostridium difficile QCD-97b34]
gi|255650949|ref|ZP_05397851.1| cytidine deaminase [Clostridium difficile QCD-37x79]
gi|260684018|ref|YP_003215303.1| cytidine deaminase [Clostridium difficile CD196]
gi|260687678|ref|YP_003218812.1| cytidine deaminase [Clostridium difficile R20291]
gi|306520829|ref|ZP_07407176.1| cytidine deaminase [Clostridium difficile QCD-32g58]
gi|384361661|ref|YP_006199513.1| cytidine deaminase [Clostridium difficile BI1]
gi|115251491|emb|CAJ69324.1| Cytidine deaminase (Cytidine aminohydrolase) (CDA) [Clostridium
difficile 630]
gi|260210181|emb|CBA64376.1| cytidine deaminase [Clostridium difficile CD196]
gi|260213695|emb|CBE05567.1| cytidine deaminase [Clostridium difficile R20291]
Length = 133
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L + A+ + P S F VGA L SG+++ G N+E L AE+ I I
Sbjct: 6 LLRLAEDARQHSYAPYSGFRVGAALLTKSGKVYTGCNIECASLGGTNC--AERTAIFKAI 63
Query: 88 LNAEPRLQHLAVSAA---------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + +A+++ PCG CRQ + E SDI I IT E H +
Sbjct: 64 SEGDKDIYKIAIASDNSENNEQTYPCGICRQVIIEF--GSDIKI-ITGYTKGEVFEHSIK 120
Query: 139 HLLPDRFGPNDL 150
LLP+ F NDL
Sbjct: 121 DLLPNYFSGNDL 132
>gi|56421024|ref|YP_148342.1| cytidine deaminase [Geobacillus kaustophilus HTA426]
gi|56380866|dbj|BAD76774.1| cytidine deaminase [Geobacillus kaustophilus HTA426]
Length = 140
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 18 QKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIH 77
+KS L ++ L K A+ LA P SKF VGA L G ++ G N+E +
Sbjct: 4 RKSQLVEIEQLIVEAKKARELAYVPYSKFPVGAALLTKGGSVYRGCNIENAAYSVCNC-- 61
Query: 78 AEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNE 131
AE+ + E LAV A PCG CRQ + EL + D+ + + ++ +
Sbjct: 62 AERTALFKAYSEGEKEFTALAVIADTPRPVPPCGACRQVIAELCH-GDMKVILANLKGD- 119
Query: 132 RKYHPLSHLLPDRFGPNDL 150
K +S LLP+ F DL
Sbjct: 120 VKVMTVSELLPEAFSAEDL 138
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
E+L A +A ++ PYSK P G A++ G++Y+G +E+AAY+
Sbjct: 12 EQLIVEAKKARELAYVPYSKFPVGAALLTKGGSVYRGCNIENAAYS 57
>gi|225715014|gb|ACO13353.1| Cytidine deaminase [Esox lucius]
Length = 192
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P SKF VGA L G +F G NVE L + AE+ + +
Sbjct: 41 AKEFAYCPYSKFRVGAALLAHDGTVFTGCNVENASHNL--GLCAERTAVVKAVSQGYQSF 98
Query: 95 QHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ +A+++ +PCG CRQFL+E + + + S K + LLP FGP
Sbjct: 99 KAVAIASDLEDQFISPCGGCRQFLREFGDQRSVYL---SKPDESYKKMTVEDLLPVSFGP 155
Query: 148 NDLLDKDV 155
DL K V
Sbjct: 156 EDLKRKRV 163
>gi|255994493|ref|ZP_05427628.1| cytidine deaminase [Eubacterium saphenum ATCC 49989]
gi|255993206|gb|EEU03295.1| cytidine deaminase [Eubacterium saphenum ATCC 49989]
Length = 136
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S VGA L SSGRI+ G NVE +I AE+ ++ + + E + +A
Sbjct: 23 AYSPYSDIKVGAALLTSSGRIYTGVNVE--NASFGATICAERVAVSKAVTDGESNFKAIA 80
Query: 99 VSA-----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDK 153
+++ PCG CRQ L E DI + + + N +E LS + D F N DK
Sbjct: 81 IASNTEGIVPCGICRQVLAEFN--KDIKLIMQAAN-DEITVKKLSEVYQDPF-LNTFFDK 136
>gi|283777810|ref|YP_003368565.1| cytidine deaminase [Pirellula staleyi DSM 6068]
gi|283436263|gb|ADB14705.1| cytidine deaminase [Pirellula staleyi DSM 6068]
Length = 130
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T Q A S F VGA L SG+I G NVE L +I AE+ + +
Sbjct: 9 LVTAALEVQQKAYAKYSNFWVGAALLTESGKIIAGCNVENASYGL--TICAERSAVFAAV 66
Query: 88 LNAEPRLQHLAVSAA----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
E + +A++ A PCG CRQ L E + + I + S + +++ H L+ LLP
Sbjct: 67 GMGETSFKAIAIATAGGYPPCGACRQVLAEFCGSLPV-ILVNSDDPADQQMHDLAQLLPG 125
Query: 144 RF 145
RF
Sbjct: 126 RF 127
>gi|313225505|emb|CBY06979.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
TVL+LL ++ + A P SKF VGA L S G+IF G NVE L + AE+
Sbjct: 5 TVLELLQK-ARAVRENAYAPYSKFRVGAALLTSDGKIFTGCNVE--NLAYGSATCAERTG 61
Query: 83 ITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I + +++ PCG+CRQ L E D+ + +T E K
Sbjct: 62 ICKAVSEGSRHFTACMITSDLEDWIYPCGNCRQTLAEF---GDLTLILTKNEGEETKIMK 118
Query: 137 LSHLLPDRFGP-NDLLDKD 154
LS + F N+LL+K+
Sbjct: 119 LSEIHGGSFATMNNLLNKE 137
>gi|291221319|ref|XP_002730668.1| PREDICTED: cytidine deaminase-like [Saccoglossus kowalevskii]
Length = 138
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS- 100
P SKF VG L G+++ G N+E L +I AE+ + I + + +A++
Sbjct: 24 PYSKFRVGCAVLTEDGKVYAGSNIENASYGL--TICAERAALAKAITEGHRKFKAMALTT 81
Query: 101 -----AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQF+ E D+ + ++ + KY LLP FGP+DL
Sbjct: 82 DLNEFTTPCGACRQFIVEF-GKYDLYMVKPDLSYEKYKY----DLLPMGFGPSDL 131
>gi|92112955|ref|YP_572883.1| cytidine deaminase [Chromohalobacter salexigens DSM 3043]
gi|91796045|gb|ABE58184.1| cytidine deaminase [Chromohalobacter salexigens DSM 3043]
Length = 140
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+ VGA+ + SGR +LG NVE + + AE I +I E + L V
Sbjct: 27 PYSRHPVGALLIAESGRHYLGCNVESANF---KGLCAEAGAIGAMIAQGEREIVTLYVIG 83
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E + + I + + N K++ + LLPD FGP +L
Sbjct: 84 PGHHLCTPCGDCRQRIREFATPATV-IVVLDGDGNPLKHYTMEQLLPDSFGPENL 137
>gi|383847207|ref|XP_003699246.1| PREDICTED: cytidine deaminase-like [Megachile rotundata]
Length = 148
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 28 LPTLVK---SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ TL+K +A+ + P SKF VGA L G IF G NVE P+ AE+ I
Sbjct: 16 IQTLIKKSIAAREYSYSPYSKFKVGAAILCVDGTIFTGCNVENASYPVGTC--AERTAIV 73
Query: 85 NLILNAEPRLQHLAVSA--------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + + + LAV+A PCG CRQ + E DI I +T ++
Sbjct: 74 KAVSEGKRKFKALAVAADKEKNDFVTPCGFCRQAIAEF---GDIIIYLTGPDTTSVLKTT 130
Query: 137 LSHLLPDRFG 146
+ LLP FG
Sbjct: 131 ICKLLPHAFG 140
>gi|15963881|ref|NP_384234.1| cytidine deaminase [Sinorhizobium meliloti 1021]
gi|334318159|ref|YP_004550778.1| cytidine deaminase [Sinorhizobium meliloti AK83]
gi|384531286|ref|YP_005715374.1| cytidine deaminase [Sinorhizobium meliloti BL225C]
gi|407722471|ref|YP_006842133.1| cytidine deaminase [Sinorhizobium meliloti Rm41]
gi|433611921|ref|YP_007188719.1| cytidine deaminase, homotetrameric [Sinorhizobium meliloti GR4]
gi|15073056|emb|CAC41515.1| Putative cytidine deaminase [Sinorhizobium meliloti 1021]
gi|333813462|gb|AEG06131.1| cytidine deaminase [Sinorhizobium meliloti BL225C]
gi|334097153|gb|AEG55164.1| cytidine deaminase [Sinorhizobium meliloti AK83]
gi|407320703|emb|CCM69307.1| cytidine deaminase [Sinorhizobium meliloti Rm41]
gi|429550111|gb|AGA05120.1| cytidine deaminase, homotetrameric [Sinorhizobium meliloti GR4]
Length = 152
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA GRI+ G N+E P + AE I+++++ +
Sbjct: 32 REAMAKAHAPYSKFPVGAAIRAEDGRIYTGANIENLSFP--EGWCAETTAISHMVMAGQR 89
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ L E S I +C + RK LS LLP F
Sbjct: 90 KITEVAVVAEKLALCPPCGGCRQRLAEFSGASTRIYLC---DETGIRKTLALSDLLPHSF 146
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K+ L AA EA K+HAPYSK P G AI +G IY G+ +E+ ++
Sbjct: 24 KDELFVAAREAMAKAHAPYSKFPVGAAIRAEDGRIYTGANIENLSF 69
>gi|423084179|ref|ZP_17072684.1| cytidine deaminase [Clostridium difficile 002-P50-2011]
gi|423086764|ref|ZP_17075155.1| cytidine deaminase [Clostridium difficile 050-P50-2011]
gi|357543226|gb|EHJ25259.1| cytidine deaminase [Clostridium difficile 002-P50-2011]
gi|357545873|gb|EHJ27836.1| cytidine deaminase [Clostridium difficile 050-P50-2011]
Length = 140
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L + A+ + P S F VGA L SG+++ G N+E L AE+ I I
Sbjct: 13 LLRLAEDARQHSYAPYSGFRVGAALLTKSGKVYTGCNIECASLGGTNC--AERTAIFKAI 70
Query: 88 LNAEPRLQHLAVSAA---------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + +A+++ PCG CRQ + E SDI I IT E H +
Sbjct: 71 SEGDKDIHKIAIASDNSENNEQTYPCGICRQVIIEF--GSDIKI-ITGYTKGEVFEHNIK 127
Query: 139 HLLPDRFGPNDL 150
LLP+ F NDL
Sbjct: 128 DLLPNYFSGNDL 139
>gi|399525207|ref|ZP_10765671.1| putative cytidine deaminase [Atopobium sp. ICM58]
gi|398373394|gb|EJN51334.1| putative cytidine deaminase [Atopobium sp. ICM58]
Length = 160
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A T A P S F VGA GL S GRI G NVE G + ++ AE ++++LI + L
Sbjct: 16 AMTHAYCPYSHFPVGAAGLASDGRIVSGCNVENAGYGV--TLCAECGMVSDLIRSGGGAL 73
Query: 95 QHLA------VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ V APCG CRQ + E S C+ + ++ +LP FGP+
Sbjct: 74 LAVVAVNGDRVPVAPCGRCRQLIYEHGGPS----CLVLMPGGVAD---MTQVLPGAFGPH 126
Query: 149 DL 150
DL
Sbjct: 127 DL 128
>gi|388580179|gb|EIM20496.1| cytidine deaminase [Wallemia sebi CBS 633.66]
Length = 150
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 29 PTLVKSA-QTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
P L+ A Q L R P SKF VGA + + IF G NVE +I AE+ +
Sbjct: 9 PELISRAFQALQRSYSPYSKFRVGAALVSTENEIFGGANVE--NASYGGAICAERTALVK 66
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSI----NSNERKYH 135
+ R Q LAV + PCG CRQF++E + + ++ N++E Y
Sbjct: 67 AVSEGHKRFQALAVVSDLDEPITPCGICRQFIREFFSPETPILLVSQAHPANNASETSYK 126
Query: 136 -PL------SHLLPDRFGPNDL 150
PL S LLPD FGP L
Sbjct: 127 GPLIKRTNISVLLPDSFGPEQL 148
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSG 248
A +A +S++PYSK G A++ E I+ G+ +E+A+Y ++ + ALV ++
Sbjct: 15 AFQALQRSYSPYSKFRVGAALVSTENEIFGGANVENASYGGAICAERTALVKAVSE---- 70
Query: 249 GGGGGYERIVAAALVEKED 267
G++R A A+V D
Sbjct: 71 ----GHKRFQALAVVSDLD 85
>gi|326791150|ref|YP_004308971.1| cytidine deaminase [Clostridium lentocellum DSM 5427]
gi|326541914|gb|ADZ83773.1| cytidine deaminase [Clostridium lentocellum DSM 5427]
Length = 134
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 26 QLLPTLVKS--AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
Q LVK+ AQ A P SKF VGA L SG+I+ G N+E + AE+ I
Sbjct: 3 QYKELLVKAHEAQEQAYVPYSKFKVGAAVLMKSGKIYTGCNIE--NASFGATNCAERTAI 60
Query: 84 TNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ E + +A+ + PCG CRQ + E + D I E K P
Sbjct: 61 FKAVSEGEHEIAAIAIVGSHNEFTYPCGICRQVIAEFMSEGDF---IFENAEGEMKVIPF 117
Query: 138 SHLLPDRFGPNDLLDKD 154
+ + P F DLL ++
Sbjct: 118 AEMFPYTFTKVDLLKEE 134
>gi|322369430|ref|ZP_08043995.1| cytidine deaminase [Haladaptatus paucihalophilus DX253]
gi|320551162|gb|EFW92811.1| cytidine deaminase [Haladaptatus paucihalophilus DX253]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ Q A P S++ VGA + G +++G N+E S+HAE+ I I +
Sbjct: 9 REIQDRAHVPYSEYPVGAALRTADGTVYVGCNIENANFS--NSLHAEEVAIAEAIKSGHR 66
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
LAVS+A PCG CRQ L E D ++ + + ++ + L LLPD
Sbjct: 67 EFDRLAVSSARRDGVTPCGMCRQTLAEF---CDDDLVVVCDHGDDVTEYTLGELLPD 120
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ L A E +++H PYS+ P G A+ +G +Y G +E+A ++ SL + A+ +
Sbjct: 2 DELVEQAREIQDRAHVPYSEYPVGAALRTADGTVYVGCNIENANFSNSLHAEEVAIAEAI 61
Query: 243 AAG 245
+G
Sbjct: 62 KSG 64
>gi|392957208|ref|ZP_10322732.1| cytidine deaminase [Bacillus macauensis ZFHKF-1]
gi|391876615|gb|EIT85211.1| cytidine deaminase [Bacillus macauensis ZFHKF-1]
Length = 132
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+A+T A P SKF VGA L + G+++ G N+E P+ AE+ + + + +
Sbjct: 12 TARTFAYVPYSKFPVGAALLSNDGKVYRGANIENAAYPMTNC--AERTALYKAVSEGDTQ 69
Query: 94 LQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+AV+A PCG CRQ L EL + + ++++ + ++ + LLP F P
Sbjct: 70 FVAIAVTADTDRPVPPCGACRQVLSEL-CPPQMKVYLSNLKGDIQETT-VEALLPGAFSP 127
Query: 148 NDL 150
DL
Sbjct: 128 GDL 130
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K++L AL A ++ PYSK P G A++ +G +Y+G+ +E+AAY + + AL
Sbjct: 3 KKQLIEEALTARTFAYVPYSKFPVGAALLSNDGKVYRGANIENAAYPMTNCAERTALYKA 62
Query: 242 LAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285
++ G + + VA A+ D V A R +L + P
Sbjct: 63 VSEGDT--------QFVAIAVTADTDRPVPPCGACRQVLSELCP 98
>gi|224080457|ref|XP_002190462.1| PREDICTED: cytidine deaminase [Taeniopygia guttata]
Length = 152
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
LQL+ + A+ A P S+F VGA L + G IF G NVE L + AE+ I
Sbjct: 22 LQLMLRRSREAKNCAYCPYSQFPVGAALLTAGGEIFSGCNVENACYSL--GMCAERAAIQ 79
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+++ PCG CRQ ++E D+ + ++ L
Sbjct: 80 KAISEGHTSFKAMAIASDMGDHFITPCGACRQVMREFGTDWDVYLTKADGTYIVKR---L 136
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 137 EELLPLSFGPEDL 149
>gi|219848377|ref|YP_002462810.1| cytidine deaminase [Chloroflexus aggregans DSM 9485]
gi|219542636|gb|ACL24374.1| cytidine deaminase [Chloroflexus aggregans DSM 9485]
Length = 136
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV-- 99
P S+F VGA L ++G IF G N+E PL +I AE+ + + A + LAV
Sbjct: 23 PYSQFAVGAAVLTANGHIFSGANIENASYPL--TICAERVALFCAHMAAAGPVTALAVVT 80
Query: 100 ----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDK 153
A+PCG CRQ + EL I + + + ++R++ + LLP FGP L ++
Sbjct: 81 PTPTVASPCGACRQVIFEL--APHAQIVLLNADGSDRRFTTPAELLPYGFGPEQLHER 136
>gi|406979022|gb|EKE00881.1| hypothetical protein ACD_21C00259G0005 [uncultured bacterium]
Length = 136
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T +L+ A A P SKFHVGA G +F G NVE + AE+
Sbjct: 3 TTPELMAQKACEAMKNAYAPYSKFHVGACVQAEDGTLFTGCNVE--NAAYGPTNCAERTA 60
Query: 83 ITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNE-RKY 134
I ++I + R++ +AV PCG CRQ ++E D I + + + + K
Sbjct: 61 IFSMIAAGKKRIKAIAVVGGSGDVLCTPCGVCRQVIREFA-APDAPIYLCNPRTQKVVKT 119
Query: 135 HPLSHLLPDRFGPNDLL 151
++ LLPD FGP L+
Sbjct: 120 TNIAELLPDSFGPESLI 136
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E + A EA ++APYSK G + +G ++ G +E+AAY P+ + A+ + +
Sbjct: 6 ELMAQKACEAMKNAYAPYSKFHVGACVQAEDGTLFTGCNVENAAYGPTNCAERTAIFSMI 65
Query: 243 AAG 245
AAG
Sbjct: 66 AAG 68
>gi|378717193|ref|YP_005282082.1| cytidine deaminase Cdd [Gordonia polyisoprenivorans VH2]
gi|375751896|gb|AFA72716.1| cytidine deaminase Cdd [Gordonia polyisoprenivorans VH2]
Length = 139
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 33 KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
K+ + +AR P S+F VGA GL G + GGNVE L + AE L++ LI +
Sbjct: 5 KANEMIARAYAPYSRFPVGAAGLTVEGDMVAGGNVENVSYGL--GVCAEVSLVSALIGSG 62
Query: 91 EPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
RL+ ++V + PCG CRQ L E ++ + + R L+ LLP
Sbjct: 63 RSRLRAVSVCDSRGVVLMPCGRCRQVLFEFGGA---DLLVDHADGPLR----LAGLLPYA 115
Query: 145 FGPNDL 150
FGP+DL
Sbjct: 116 FGPDDL 121
>gi|418047289|ref|ZP_12685377.1| cytidine deaminase [Mycobacterium rhodesiae JS60]
gi|353192959|gb|EHB58463.1| cytidine deaminase [Mycobacterium rhodesiae JS60]
Length = 137
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S+F VGA L GR+ +G NVE + + AE ++ L+ RL +A
Sbjct: 21 AYAPYSRFPVGAAALVDDGRVVIGCNVE--NVSYGLGLCAECAVVCALVSGGGGRLLAVA 78
Query: 99 V------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V + PCG CRQ L E + + + PL+ LLPD FGP+DL
Sbjct: 79 VVDTTGAALMPCGRCRQLLLEHGGPG-------LLVDHAQGPRPLAELLPDAFGPDDL 129
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
T + L+ A+E A +++APYS+ P G A + +G + G +E+ +Y L + A
Sbjct: 3 TRIDWKSLRAKAIEVAAQAYAPYSRFPVGAAALVDDGRVVIGCNVENVSYGLGLC-AECA 61
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
+V L +GG G R++A A+V+ A + R LL
Sbjct: 62 VVCALVSGGGG-------RLLAVAVVDTTGAALMPCGRCRQLL 97
>gi|399908357|ref|ZP_10776909.1| cytidine deaminase [Halomonas sp. KM-1]
Length = 137
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S+ VGA+ SG + G NVE + ++ + AE I ++ E RL+H+
Sbjct: 20 AYAPYSQHPVGAMVESESGARYFGANVE---VAHYKGLCAEASAIAAMVSAGERRLRHVY 76
Query: 99 VSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V PCG CRQ ++E + ++ I + K + + LLPD FGP +L
Sbjct: 77 VIGPGEHLCTPCGDCRQRIREFAD-AETRIHVVDAEGRLLKRYTMEQLLPDAFGPENL 133
>gi|453381550|dbj|GAC83763.1| cytidine deaminase [Gordonia paraffinivorans NBRC 108238]
Length = 134
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 33 KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
K+++ L+R P S++ VGA G+ S G I G NVE L I AE LI L+ +
Sbjct: 13 KASEMLSRAYAPYSRYPVGAAGITSEGEILGGCNVENVSYGL--GICAEVSLIAQLVAHG 70
Query: 91 EPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
L+ ++V+ A PCG CRQ L E + S R L+ LLPD
Sbjct: 71 RGTLRAVSVTDANGKVLMPCGRCRQVLLEHGGRG----LLVDHPSGSRT---LADLLPDA 123
Query: 145 FGPNDL 150
FGP+D+
Sbjct: 124 FGPDDI 129
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L++ A E ++++APYS+ P G A + EG I G +E+ +Y + + +L+A L A
Sbjct: 10 LRHKASEMLSRAYAPYSRYPVGAAGITSEGEILGGCNVENVSYGLGI-CAEVSLIAQLVA 68
Query: 245 GGSG 248
G G
Sbjct: 69 HGRG 72
>gi|343926657|ref|ZP_08766155.1| cytidine deaminase [Gordonia alkanivorans NBRC 16433]
gi|343763409|dbj|GAA13081.1| cytidine deaminase [Gordonia alkanivorans NBRC 16433]
Length = 134
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S + VGA G+ S GR+ G NVE L I AE L+ LI + L+ +
Sbjct: 21 AYAPYSHYPVGAAGVTSDGRVVAGCNVENVSYGL--GICAEVSLVAQLISQGDRSLRAVT 78
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP-----LSHLLPDRFGP 147
V+ A PCG CRQ L E D+ + HP LS LLPD FGP
Sbjct: 79 VTDASGKVLMPCGRCRQVLLE-HGGRDLLV-----------DHPAGPRLLSDLLPDAFGP 126
Query: 148 NDL 150
+D+
Sbjct: 127 DDI 129
>gi|242011954|ref|XP_002426708.1| Cytidine deaminase, putative [Pediculus humanus corporis]
gi|212510879|gb|EEB13970.1| Cytidine deaminase, putative [Pediculus humanus corporis]
Length = 149
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L L A+ A P SKF VGA L G IF G NVE L S+ AEQ I
Sbjct: 22 VQNLLQLSCVARNHAYAPYSKFAVGAALLCRDGEIFQGCNVENSSYGL--SVCAEQTAIV 79
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + + +AV A PCG CRQF+ E D+ T + E +
Sbjct: 80 KAISSGNRNISAIAVVADSNSFVTTPCGKCRQFINEFGTQIDVYCAKTDL--KEVLLSNI 137
Query: 138 SHLLPDRF 145
S+LLP F
Sbjct: 138 SNLLPYSF 145
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
+T + L + A N ++APYSK G A++ +G I++G +E+++Y S+ Q
Sbjct: 17 QTSASVQNLLQLSCVARNHAYAPYSKFAVGAALLCRDGEIFQGCNVENSSYGLSVCAEQT 76
Query: 237 ALVAYLAAG 245
A+V +++G
Sbjct: 77 AIVKAISSG 85
>gi|373457027|ref|ZP_09548794.1| cytidine deaminase [Caldithrix abyssi DSM 13497]
gi|371718691|gb|EHO40462.1| cytidine deaminase [Caldithrix abyssi DSM 13497]
Length = 129
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++ L + A+ AR S F VGA L G+I G NVE L +I AE+ +T
Sbjct: 1 MEKLIKAAREARKFARARYSNFQVGAALLTRDGQIITGSNVESSSYGL--TICAERVALT 58
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ + + +A+ A PCG CRQ L + DI I ++ N + + + L
Sbjct: 59 KALSEGIDQFEAIAIVAKDGSFTPPCGACRQLLYDY--APDIEIILS--NGKDTQKYKLK 114
Query: 139 HLLPDRFGPNDLLDK 153
LLP F ++L +K
Sbjct: 115 ELLPHAFDESNLGEK 129
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E+L AA EA + A YS G A++ +G I GS +ES++Y ++ + AL L
Sbjct: 2 EKLIKAAREARKFARARYSNFQVGAALLTRDGQIITGSNVESSSYGLTICAERVALTKAL 61
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
+ G ++ A A+V K+ + A R LL +P E
Sbjct: 62 SE--------GIDQFEAIAIVAKDGSFTPPCGACRQLLYDYAPDIEI 100
>gi|294085177|ref|YP_003551937.1| cytidine deaminase [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664752|gb|ADE39853.1| cytidine deaminase [Candidatus Puniceispirillum marinum IMCC1322]
Length = 140
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T A T A P S F VGA L +G+I G NVE P I AE I ++
Sbjct: 12 LITAAIDAMTRAYAPYSNFAVGAALLDENGQIHCGANVENAAYP--NGICAETSAIAMMV 69
Query: 88 LNAEPRLQHLAVSA---------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+++ +AV+ PCG CRQ ++E + I + + +R L+
Sbjct: 70 NAGGTQIKRIAVAGGTDAVDILCTPCGGCRQRIREFAAPDTVIIIASPVGEQQR--FTLA 127
Query: 139 HLLPDRFGPNDL 150
LLP FGP +L
Sbjct: 128 DLLPHSFGPANL 139
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
L AA++A +++APYS G A++D G I+ G+ +E+AAY + +A+
Sbjct: 9 DSTLITAAIDAMTRAYAPYSNFAVGAALLDENGQIHCGANVENAAYPNGICAETSAIAMM 68
Query: 242 LAAGGS 247
+ AGG+
Sbjct: 69 VNAGGT 74
>gi|163847749|ref|YP_001635793.1| cytidine deaminase [Chloroflexus aurantiacus J-10-fl]
gi|222525614|ref|YP_002570085.1| cytidine deaminase [Chloroflexus sp. Y-400-fl]
gi|163669038|gb|ABY35404.1| cytidine deaminase [Chloroflexus aurantiacus J-10-fl]
gi|222449493|gb|ACM53759.1| cytidine deaminase [Chloroflexus sp. Y-400-fl]
Length = 135
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA L GRIF G N+E PL +I AE+ + + A +
Sbjct: 16 ARQRAYAPYSHFAVGAAVLTDDGRIFSGANIENASYPL--TICAERVALFCAHMAAAGPV 73
Query: 95 QHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
LAV A+PCG CRQ + EL I + + + +ER+ LLP FGP+
Sbjct: 74 VALAVVTPTPTVASPCGACRQVIFEL--APQAQIVLLNHDGSERRLTTPQELLPFGFGPD 131
Query: 149 DL 150
L
Sbjct: 132 QL 133
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV-AY 241
E+L AAL A +++APYS G A++ +G I+ G+ +E+A+Y ++ + AL A+
Sbjct: 7 EQLIAAALHARQRAYAPYSHFAVGAAVLTDDGRIFSGANIENASYPLTICAERVALFCAH 66
Query: 242 LAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVF-HCGCKK 298
+AA G +VA A+V V A R ++ ++P+ + + H G ++
Sbjct: 67 MAAAGP---------VVALAVVTPTPTVASPCGACRQVIFELAPQAQIVLLNHDGSER 115
>gi|108998740|ref|XP_001096632.1| PREDICTED: cytidine deaminase [Macaca mulatta]
Length = 146
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVLQ-----LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK LQ L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKPPACTLQPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+S+ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFKAIAISSDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYVVMTVQELLPSSFGPEDL 142
>gi|196234359|ref|ZP_03133187.1| cytidine deaminase [Chthoniobacter flavus Ellin428]
gi|196221551|gb|EDY16093.1| cytidine deaminase [Chthoniobacter flavus Ellin428]
Length = 130
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T +T A P S+F VGA SGR+F G NVE L +I AE+ + +
Sbjct: 6 LLTAASEVRTKAYAPYSRFQVGAALRTKSGRVFCGCNVE--NLSFGLTICAERAAVFAAV 63
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E + +AV A PCG CRQ L E ++ +C ++ +ER ++ LL
Sbjct: 64 AAGETEFEAIAVVADSVQPVTPCGACRQVLAEF--APELKVCSANLR-DERYETSIAELL 120
Query: 142 P 142
P
Sbjct: 121 P 121
>gi|326389567|ref|ZP_08211133.1| cytidine deaminase [Thermoanaerobacter ethanolicus JW 200]
gi|392938937|ref|ZP_10304581.1| cytidine deaminase, homotetrameric [Thermoanaerobacter siderophilus
SR4]
gi|325994282|gb|EGD52708.1| cytidine deaminase [Thermoanaerobacter ethanolicus JW 200]
gi|392290687|gb|EIV99130.1| cytidine deaminase, homotetrameric [Thermoanaerobacter siderophilus
SR4]
Length = 135
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K A+ A P S F VGA L +G+ + G N+E L AE+ + N
Sbjct: 9 LIDLAKEARERAYVPYSHFKVGACVLTENGKTYQGCNIENASYGLTNC--AERTALFNAY 66
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
N E +L+ +AV A +PCG CRQ + EL D+ + ++++ + + LL
Sbjct: 67 ANGERKLKAIAVVADTEGPVSPCGACRQVMMEL-GGEDMVVILSNMKG-DYAVVTVKDLL 124
Query: 142 PDRFGPNDL 150
P F DL
Sbjct: 125 PGAFTSKDL 133
>gi|152967888|ref|YP_001363672.1| cytidine deaminase [Kineococcus radiotolerans SRS30216]
gi|151362405|gb|ABS05408.1| cytidine deaminase [Kineococcus radiotolerans SRS30216]
Length = 136
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S F VGA L GR+ G N+E ++ AE L+ L + RL A
Sbjct: 22 PYSNFPVGAAALVDDGRVVSGANIE--NASYGVTLCAECTLVGQLRMTGGGRLVAFACVD 79
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLD 152
A PCG CRQ L E D+ + + R P++ +LPD FGP+DL D
Sbjct: 80 AVGNVLMPCGRCRQLLYEF-GGPDLLV------DSPRGVVPMTEVLPDAFGPHDLTD 129
>gi|313680090|ref|YP_004057829.1| cytidine deaminase [Oceanithermus profundus DSM 14977]
gi|313152805|gb|ADR36656.1| cytidine deaminase [Oceanithermus profundus DSM 14977]
Length = 132
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 30 TLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN 89
L ++A A P SKF V AV + SGR ++G NVE PL + AEQ + ++
Sbjct: 9 VLAQTALAHAYAPYSKFPVSAVVVAKSGRSYVGVNVENGAYPLSRC--AEQIAVGAMVAA 66
Query: 90 AEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
+ ++ + V A PCG CRQ L E + +C + R L LLP
Sbjct: 67 GDREIREVLVLSTSGEPATPCGACRQILSEFADGETPVVCRNTAGKELR--FKLGELLPA 124
Query: 144 RFGPND 149
F D
Sbjct: 125 AFRLED 130
>gi|376291135|ref|YP_005163382.1| Cytidine deaminase [Corynebacterium diphtheriae C7 (beta)]
gi|372104531|gb|AEX68128.1| Cytidine deaminase [Corynebacterium diphtheriae C7 (beta)]
Length = 140
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI---LNAEPRLQHLA 98
P S F VGA L ++G IF G NVE +I AE+ IT +I + A+ R H+A
Sbjct: 25 PYSNFPVGATVLTTAGEIFTGCNVE--NAAYGDTICAERNAITTMIAATMRADER--HIA 80
Query: 99 VSAA---------PCGHCRQFLQELRNTSDINICITSINSNER---KYHPLSHLLPDRFG 146
A PCG CRQ L+E C T I +E P + LLP FG
Sbjct: 81 AVAVVGLKASPCWPCGSCRQVLREFH-------CETVIVEDESGNPTSLPFAELLPYSFG 133
Query: 147 PNDLLD 152
P L D
Sbjct: 134 PEALKD 139
>gi|406963251|gb|EKD89370.1| Cytidine deaminase [uncultured bacterium]
Length = 134
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
QL+ T V+ + A P SK+ VGA L +SG+I+ G N+E PL + AE+ I
Sbjct: 10 QLIETAVQ-VREWAYAPYSKYRVGAALLTTSGKIYDGVNIENAVYPL--GLCAERVAIFK 66
Query: 86 LILNAEPRLQHLAVSA----APCGHCRQFLQELRNTSDINICITSINSNERKYH---PLS 138
+ E +A++ PCG CRQ + E + + + T+ K H +
Sbjct: 67 AVSEGEREFVAIAIATENAGMPCGSCRQVMAEYGLSMRVIVVDTT-----GKIHFESTVE 121
Query: 139 HLLPDRFGPNDLL 151
+LLP F P DL+
Sbjct: 122 NLLPGAFTPKDLM 134
>gi|323490065|ref|ZP_08095286.1| hypothetical protein GPDM_11960 [Planococcus donghaensis MPA1U2]
gi|323396361|gb|EGA89186.1| hypothetical protein GPDM_11960 [Planococcus donghaensis MPA1U2]
gi|456011644|gb|EMF45381.1| Cytidine deaminase [Planococcus halocryophilus Or1]
Length = 136
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P SKF VGA L + G+++LG N+E G L AE+ + + + +
Sbjct: 13 ARNNAYVPYSKFPVGAALLTADGKVYLGCNIENAGYSLTNC--AERTAVFKAVSEGDNKF 70
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
LAVSA +PCG CRQ L E ++ + +T++ + ++ +S LLP F
Sbjct: 71 VALAVSADTAGPVSPCGACRQVLAEF-CPPNMPVYLTNLKGDVQE-TTISELLPGAFSTE 128
Query: 149 DL 150
DL
Sbjct: 129 DL 130
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
KE+L ++EA N ++ PYSK P G A++ +G +Y G +E+A Y+
Sbjct: 3 KEQLMKQSIEARNNAYVPYSKFPVGAALLTADGKVYLGCNIENAGYS 49
>gi|332671362|ref|YP_004454370.1| cytidine deaminase [Cellulomonas fimi ATCC 484]
gi|332340400|gb|AEE46983.1| cytidine deaminase [Cellulomonas fimi ATCC 484]
Length = 131
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P SKF VG L GR+ +G NVE L ++ AE L++ L ++ RL
Sbjct: 19 AYVPYSKFPVGVAALVDDGRVVVGCNVENASYGL--TLCAECALVSGLHVSGGGRLVAFT 76
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLD 152
PCG CRQ L E + ++ I P++ +LPD FGP DL D
Sbjct: 77 CVDGHGNVLMPCGRCRQLLWEHGGPRLLVETVSGIK-------PMTEVLPDAFGPQDLED 129
Query: 153 K 153
+
Sbjct: 130 R 130
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
E + L+ AA EA ++++ PYSK P GVA + +G + G +E+A+Y +L + AL
Sbjct: 2 EIDWDALRAAATEAMHRAYVPYSKFPVGVAALVDDGRVVVGCNVENASYGLTL-CAECAL 60
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVV------RQ---EHAA-RLLLQVIS 284
V+ L G G R+VA V+ V+ RQ EH RLL++ +S
Sbjct: 61 VSGLHVSGGG-------RLVAFTCVDGHGNVLMPCGRCRQLLWEHGGPRLLVETVS 109
>gi|407795577|ref|ZP_11142535.1| cytidine deaminase [Salimicrobium sp. MJ3]
gi|407019918|gb|EKE32632.1| cytidine deaminase [Salimicrobium sp. MJ3]
Length = 133
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA L SG ++ G N+E P S AE+ I + + + LAV+A
Sbjct: 21 PYSEFPVGAAVLTKSGEVYEGVNIENAAYP--TSCCAERVAIFKAVADGHYDFETLAVTA 78
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ + E +++ + I TS+ + K + LLP F P DL
Sbjct: 79 DTDRPVPPCGSCRQVMSEFFDSNTV-IHTTSVK-GQIKSMTMEELLPFSFTPEDL 131
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++ L A++ +++ PYS+ P G A++ G +Y+G +E+AAY S + A+
Sbjct: 4 RDELIQKAIDIRKRAYVPYSEFPVGAAVLTKSGEVYEGVNIENAAYPTSCCAERVAIFKA 63
Query: 242 LAAG 245
+A G
Sbjct: 64 VADG 67
>gi|350566285|ref|ZP_08934970.1| cytidine deaminase [Peptoniphilus indolicus ATCC 29427]
gi|348662911|gb|EGY79539.1| cytidine deaminase [Peptoniphilus indolicus ATCC 29427]
Length = 134
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ +++ + P S F VGA G ++ GGN+E AE+ I
Sbjct: 5 KLIEMAIEARDNSSYTPYSNFKVGAAVEMEDGSVYSGGNIEISSYSPTNC--AERTAIFK 62
Query: 86 LILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ ++ +A+ ++ PCG CRQ ++E D+ I I + + K L L
Sbjct: 63 AVSEGHREIKKIAIVSSGGETFPCGVCRQVIREF--GKDVQIIIAT-TPEDYKVFTLEEL 119
Query: 141 LPDRFGPNDLLDKDV 155
LP FGP DL K+V
Sbjct: 120 LPHSFGPEDLGVKNV 134
>gi|303321698|ref|XP_003070843.1| cytidine deaminase family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110540|gb|EER28698.1| cytidine deaminase family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 155
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 29/139 (20%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLIL-----N 89
A+ +A P SKF VGA L G F+G NVE P+ I AE+ + ++ +
Sbjct: 21 AKDVAYCPYSKFRVGASLLAEDGTFFVGANVENASYPV--GICAEKCVFGTAVVSPFQRD 78
Query: 90 AEPR----------LQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERK 133
PR + +AV++ +PCG CRQF+++ S + N+ K
Sbjct: 79 TFPRFPRSTAGHRSFKAVAVASDIIPGTSPCGSCRQFMRQFCPPS----FPVYMYGNDGK 134
Query: 134 Y--HPLSHLLPDRFGPNDL 150
Y + LLPD FGP DL
Sbjct: 135 YVMKTMGELLPDSFGPEDL 153
>gi|320160273|ref|YP_004173497.1| cytidine deaminase [Anaerolinea thermophila UNI-1]
gi|319994126|dbj|BAJ62897.1| cytidine deaminase [Anaerolinea thermophila UNI-1]
Length = 138
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 30 TLVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
TL+++A + A P S + VGA L SG+I+ G NVE P+ ++ AE+ +
Sbjct: 10 TLIQTALQARRWAYAPYSNYRVGAALLTDSGKIYDGVNVENAAYPV--TMCAERTAVFKA 67
Query: 87 ILNAEPRLQHLAVSAA----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLP 142
+ E R +AV+ A PCG CRQ L E DI + + +S LLP
Sbjct: 68 VSEGERRFVAIAVATANGGTPCGSCRQVLAEF--GLDIQVIVVDEQGTVHLETTVSDLLP 125
Query: 143 DRFGPNDL 150
F L
Sbjct: 126 GAFTSKQL 133
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
++ K+ L AL+A ++APYS G A++ G IY G +E+AAY
Sbjct: 4 SDEQKQTLIQTALQARRWAYAPYSNYRVGAALLTDSGKIYDGVNVENAAY 53
>gi|395521723|ref|XP_003764965.1| PREDICTED: uncharacterized protein LOC100929140 [Sarcophilus
harrisii]
Length = 424
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + + A+ A P S F VGA L G+I+ G N+E PL I AE+ I
Sbjct: 293 IQKLISRGQEAKKFAYCPYSNFPVGAALLTQDGKIYSGCNIENAAYPL--GICAERTAIQ 350
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + + +A+++ PCG CRQ ++E + + + H
Sbjct: 351 KAISEGHKKFRAIAITSNLTNDFITPCGACRQVMREFGKHWYVYMTKADGTYDVNTVH-- 408
Query: 138 SHLLPDRFGPNDL 150
LLP FGP+DL
Sbjct: 409 -ELLPKSFGPDDL 420
>gi|332981674|ref|YP_004463115.1| cytidine deaminase [Mahella australiensis 50-1 BON]
gi|332699352|gb|AEE96293.1| cytidine deaminase [Mahella australiensis 50-1 BON]
Length = 127
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ +L T VK A+ A P S F VGA L SGRI+ G N+E S AE+ I
Sbjct: 4 VDMLITKVKEARERAYAPYSHFRVGAALLTQSGRIYTGCNIE--NAAYGASNCAERTAIF 61
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ +A+ + PCG CRQ + E + DI +C T+ +R H +
Sbjct: 62 KAVSEGYSSFSAMAIISDAEEYIFPCGICRQVIWEFSHDIDIFVC-TADGRWQR--HNIK 118
Query: 139 HLLPDRF 145
LLP F
Sbjct: 119 ELLPHGF 125
>gi|448720915|ref|ZP_21703509.1| cytidine deaminase [Halobiforma nitratireducens JCM 10879]
gi|445780528|gb|EMA31410.1| cytidine deaminase [Halobiforma nitratireducens JCM 10879]
Length = 144
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L + Q+ A P S++ VGA + G +F+G N+E S+HAE+ I
Sbjct: 14 QSLLERARDIQSAAHVPYSEYRVGAALETADGEVFVGCNLENANFS--NSLHAEEVAIAE 71
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
+ + LAVS+ PCG CRQ L E + D+ + + E + L
Sbjct: 72 AVKSGHREFSRLAVSSDRRDAVTPCGMCRQTLAEFCD-DDLRVLCDEGDGEEPTEYTLGE 130
Query: 140 LLPDRFGPNDL 150
LLP+ L
Sbjct: 131 LLPNTISEETL 141
>gi|349687202|ref|ZP_08898344.1| cytidine deaminase [Gluconacetobacter oboediens 174Bp2]
Length = 132
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA + G+I+ G NVE P ++ AE I ++ ++ +A+S
Sbjct: 20 PYSRFLVGAAVETTDGQIYSGCNVENAAYP--EATCAEAGAIAAMVAQGGRHIRRVAISG 77
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E + D + + S L+ LLPD FGP++L
Sbjct: 78 GVDTACPPCGGCRQKIREF-ASPDTPVTMASPTGEVLLVRTLAELLPDSFGPDNL 131
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L AA++ +++APYS+ G A+ +G IY G +E+AAY + A+ A +A
Sbjct: 6 LIQAAVDIRLRAYAPYSRFLVGAAVETTDGQIYSGCNVENAAYPEATCAEAGAIAAMVAQ 65
Query: 245 GG 246
GG
Sbjct: 66 GG 67
>gi|359425864|ref|ZP_09216956.1| cytidine deaminase [Gordonia amarae NBRC 15530]
gi|358238861|dbj|GAB06538.1| cytidine deaminase [Gordonia amarae NBRC 15530]
Length = 134
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 21 GLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQ 80
G+T + L +S A P S+F VGA + GR G NVE + I AE
Sbjct: 3 GMTEWKTLRDNARSMIGKAYAPYSRFPVGASAITDDGRFVAGCNVE--NVSYGLGICAEV 60
Query: 81 FLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKY 134
L L+ RL+ +AV A PCG CRQ L E + +
Sbjct: 61 TLAAQLVATGGGRLRAVAVCDADGSPLMPCGRCRQVLLEFGGPG-------LLVDHADGP 113
Query: 135 HPLSHLLPDRFGPNDL 150
L LLPD FGP DL
Sbjct: 114 RTLGELLPDAFGPEDL 129
>gi|302670915|ref|YP_003830875.1| cytidine deaminase [Butyrivibrio proteoclasticus B316]
gi|302395388|gb|ADL34293.1| cytidine deaminase Cdd [Butyrivibrio proteoclasticus B316]
Length = 141
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV-- 99
P S ++VGA L ++G I+ G N+E + AE+ + +A+
Sbjct: 23 PYSHYNVGAALLAANGTIYTGCNIE--NASFTPTNCAERTAFFKAVSEGVKEFTAIAICG 80
Query: 100 ---------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+PCG CRQ + E I IC S + + K + L +LPDRFGP +L
Sbjct: 81 GADGATELDDCSPCGVCRQVMSEFCRDEFIIICAKS--TTDYKTYTLPEILPDRFGPVNL 138
Query: 151 LDK 153
L K
Sbjct: 139 LGK 141
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPS------- 230
T+ E L AL+ N S+ PYS G A++ G IY G +E+A++ P+
Sbjct: 2 TKEQIENLIEKALDMRNYSYTPYSHYNVGAALLAANGTIYTGCNIENASFTPTNCAERTA 61
Query: 231 -LGPVQAALVAYLAAGGSGGGGGGYE 255
V + + A GG G E
Sbjct: 62 FFKAVSEGVKEFTAIAICGGADGATE 87
>gi|345015795|ref|YP_004818149.1| cytidine deaminase [Streptomyces violaceusniger Tu 4113]
gi|344042144|gb|AEM87869.1| cytidine deaminase [Streptomyces violaceusniger Tu 4113]
Length = 140
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
+ A + A P S F VGA L GR G NVE + ++ AE L+++L+ +
Sbjct: 18 ARDAMSRAYAPYSDFPVGAAALVDDGRTVSGCNVENAAYGV--ALCAECGLVSSLVASGG 75
Query: 92 PRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
RL PCG CRQ L E +T I PL+ LLPD F
Sbjct: 76 GRLTAFTCCDRAGAVLMPCGRCRQLLWEHGGPELQMDTLTGI-------RPLAELLPDAF 128
Query: 146 GPNDL 150
GP DL
Sbjct: 129 GPADL 133
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
P E L+ A +A ++++APYS P G A + +G G +E+AAY +L
Sbjct: 4 TPAAAPDWEGLRAQARDAMSRAYAPYSDFPVGAAALVDDGRTVSGCNVENAAYGVAL-CA 62
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
+ LV+ L A G G R+ A ++ AV+ R LL
Sbjct: 63 ECGLVSSLVASGGG-------RLTAFTCCDRAGAVLMPCGRCRQLLW 102
>gi|296206925|ref|XP_002750430.1| PREDICTED: cytidine deaminase [Callithrix jacchus]
Length = 146
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKRPACTLKPKCVQRLLVCSQEAKKSAYCPYSHFPVGAALLTQDGRIFQGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I I + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAISEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWAVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYIVMTVQELLPSSFGPEDL 142
>gi|384538005|ref|YP_005722090.1| Cytidine deaminase [Sinorhizobium meliloti SM11]
gi|336034897|gb|AEH80829.1| Cytidine deaminase [Sinorhizobium meliloti SM11]
Length = 152
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA GRI+ G N+E P + AE I+++++ +
Sbjct: 32 REAMAKAHAPYSKFPVGAAIRAEDGRIYTGANIENLSFP--EGWCAETTAISHMVMAGQR 89
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ L E S I +C + RK LS LLP F
Sbjct: 90 KITEVAVVAEKLALCPPCGGCRQRLAEFSGASTRIYLC---DETGIRKTLALSDLLPLSF 146
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K+ L AA EA K+HAPYSK P G AI +G IY G+ +E+ ++
Sbjct: 24 KDELFVAAREAMAKAHAPYSKFPVGAAIRAEDGRIYTGANIENLSF 69
>gi|254385189|ref|ZP_05000521.1| cytidine deaminase [Streptomyces sp. Mg1]
gi|194344066|gb|EDX25032.1| cytidine deaminase [Streptomyces sp. Mg1]
Length = 132
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++L + A + A P S F VG L GR+ G NVE L S+ AE L++
Sbjct: 9 WEVLRAAARDAMSRAYAPYSGFAVGVAALVDDGRVVTGCNVENASYGL--SLCAECGLVS 66
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+L RL H S PCG CRQ L E + + PL+
Sbjct: 67 SLQATGGGRLTHFTCVDGKGESLVPCGRCRQLLFEFGGAE-------LLVDTPKGILPLA 119
Query: 139 HLLPDRFGPNDL 150
+LP FGP+ L
Sbjct: 120 EMLPQAFGPDHL 131
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L+ AA +A ++++APYS GVA + +G + G +E+A+Y SL + LV+ L
Sbjct: 10 EVLRAAARDAMSRAYAPYSGFAVGVAALVDDGRVVTGCNVENASYGLSL-CAECGLVSSL 68
Query: 243 AAGGSG 248
A G G
Sbjct: 69 QATGGG 74
>gi|325290527|ref|YP_004266708.1| cytidine deaminase [Syntrophobotulus glycolicus DSM 8271]
gi|324965928|gb|ADY56707.1| cytidine deaminase [Syntrophobotulus glycolicus DSM 8271]
Length = 137
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K+A + P S++ VGA L +GRI G NVE L ++ AE+ I I E
Sbjct: 13 KAAGANSYSPYSRYPVGAAILWETGRITTGCNVENSSYGL--TVCAERNAIYKGICEGER 70
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
++ LAVS +PCG CRQ ++E I I + L LLP+ FG
Sbjct: 71 KISALAVSVQDSKMPSPCGACRQVIREFAEECPI---ILQNGEGKIAISSLRELLPNSFG 127
Query: 147 PNDLLDKD 154
P + L+K+
Sbjct: 128 P-EFLEKN 134
>gi|296128879|ref|YP_003636129.1| cytidine deaminase [Cellulomonas flavigena DSM 20109]
gi|296020694|gb|ADG73930.1| cytidine deaminase [Cellulomonas flavigena DSM 20109]
Length = 145
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 16 MAQKSGLTV-LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
M++ S TV + L + T A P S+F VG L GR+ +G NVE +
Sbjct: 1 MSRSSTPTVDWEALRAAARDVMTRAYAPYSRFPVGVAALVDDGRVVVGCNVENASYGV-- 58
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSIN 128
+ AE L++ L + RL PCG CRQ L E + + ++ I
Sbjct: 59 GLCAECSLVSMLHVTGGGRLVAFTCVDGHGDVLMPCGRCRQLLFEHGGPTLLVETVSGI- 117
Query: 129 SNERKYHPLSHLLPDRFGPNDLLDK 153
P+S +LPD FGP DL+++
Sbjct: 118 ------RPMSEVLPDAFGPVDLVER 136
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L+ AA + +++APYS+ P GVA + +G + G +E+A+Y L + +LV+ L
Sbjct: 12 EALRAAARDVMTRAYAPYSRFPVGVAALVDDGRVVVGCNVENASYGVGL-CAECSLVSML 70
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
G G R+VA V+ V+ R LL
Sbjct: 71 HVTGGG-------RLVAFTCVDGHGDVLMPCGRCRQLL 101
>gi|392427202|ref|YP_006468196.1| cytidine deaminase [Desulfosporosinus acidiphilus SJ4]
gi|391357165|gb|AFM42864.1| cytidine deaminase [Desulfosporosinus acidiphilus SJ4]
Length = 151
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S + VGA L SSG IF G NVE L ++ AE+ I E +L+ + ++
Sbjct: 38 PYSHYPVGAAALFSSGLIFSGCNVENASYGL--TVCAERNAIFQAAAKGERKLEAIVIAV 95
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+PCG CRQ ++E ++ I I E ++ L LLP+ FGP+ L
Sbjct: 96 PTDEFPSPCGACRQVIREF---AEDCIVILVNGRRETRWTTLRKLLPESFGPDFL 147
>gi|402822808|ref|ZP_10872271.1| cytidine deaminase [Sphingomonas sp. LH128]
gi|402263675|gb|EJU13575.1| cytidine deaminase [Sphingomonas sp. LH128]
Length = 147
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE-PRLQHLAVS 100
P S FHVGA L + G + G NVE L S+ AE I ++ + P+LQ LAV+
Sbjct: 27 PYSNFHVGAALLLADGTVVTGANVENASYGL--SLCAETVAIAGILAKGDRPQLQALAVT 84
Query: 101 ------------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
PCG CRQ + E+ + + + LS LLP FGP
Sbjct: 85 GGAPGAAGQGPQVTPCGRCRQIINEIAQLGGTDPVVWCDGAEGVLETRLSELLPYAFGPA 144
Query: 149 DL 150
+L
Sbjct: 145 NL 146
>gi|427406385|ref|ZP_18896590.1| cytidine deaminase [Selenomonas sp. F0473]
gi|425709226|gb|EKU72265.1| cytidine deaminase [Selenomonas sp. F0473]
Length = 135
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S F VGA LG SGR++ G NVE P+ I AE+ I + + E + LAV A
Sbjct: 20 PYSHFAVGAALLGRSGRVYGGVNVENASYPV--GICAERAAIARAVADGERDFEALAVVA 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKD 154
PCG CRQ + EL + + ++ + R P + LLP FG L K+
Sbjct: 78 DSPGVCVPCGMCRQMIAELPVG---RVILANLRGDLRVMTP-AALLPHAFGAAALPGKE 132
>gi|320094479|ref|ZP_08026255.1| cytidine deaminase [Actinomyces sp. oral taxon 178 str. F0338]
gi|319978588|gb|EFW10155.1| cytidine deaminase [Actinomyces sp. oral taxon 178 str. F0338]
Length = 148
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
Q L L A A P S F VGA GL + GR+ G NVE G ++ AE +++
Sbjct: 15 WQRLSALAVEAMERAYCPYSGFPVGAAGLTADGRLVSGCNVENAGYGC--TLCAECSMVS 72
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L+ RL +A APCG CRQ + E C+ + + +
Sbjct: 73 ELVRTGGGRLVAVACVNGNKEPVAPCGRCRQVIYEHGGDE----CVVLMPAGAMT---MR 125
Query: 139 HLLPDRFGPNDL 150
+LP FGP+DL
Sbjct: 126 EVLPGAFGPDDL 137
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+RL A+EA +++ PYS P G A + +G + G +E+A Y +L + ++V+ L
Sbjct: 16 QRLSALAVEAMERAYCPYSGFPVGAAGLTADGRLVSGCNVENAGYGCTL-CAECSMVSEL 74
Query: 243 AAGGSGGGGGGYERIVAAALV 263
G G R+VA A V
Sbjct: 75 VRTGGG-------RLVAVACV 88
>gi|404257947|ref|ZP_10961270.1| cytidine deaminase [Gordonia namibiensis NBRC 108229]
gi|403403554|dbj|GAB99679.1| cytidine deaminase [Gordonia namibiensis NBRC 108229]
Length = 118
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S++ VGA G+ S GR+ G NVE L I AE L LI L+ +
Sbjct: 5 AYAPYSRYPVGAAGITSDGRVVAGCNVENVSYGL--GICAEVSLTAQLISQGGKSLRAVT 62
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V+ A PCG CRQ L E D+ + S R LS LLPD FGP+D+
Sbjct: 63 VTDASGKVLMPCGRCRQVLLE-HGGRDL---LVDHPSGPRV---LSDLLPDAFGPDDI 113
>gi|312135528|ref|YP_004002866.1| cytidine deaminase [Caldicellulosiruptor owensensis OL]
gi|311775579|gb|ADQ05066.1| cytidine deaminase [Caldicellulosiruptor owensensis OL]
Length = 138
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82
T++ L TL + AQ A P S F VGA +G+S +++ G NVE L S+ AE+
Sbjct: 10 TIIYFL-TLAQEAQKKAYAPYSCFKVGAAAVGNSSKVYTGCNVENASYSL--SMCAERIA 66
Query: 83 ITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDI---NICITS-INSNER 132
+ I E ++ L + +PCG CRQ + EL S I N +T I +N +
Sbjct: 67 LFKAISEGESEIKALYIIGPENEPISPCGACRQVIFELARNSTIYLSNCNMTKVIETNSK 126
Query: 133 KYHPLSHLLPDR 144
+ P L R
Sbjct: 127 ELLPYGFDLKGR 138
>gi|20806970|ref|NP_622141.1| cytidine deaminase [Thermoanaerobacter tengcongensis MB4]
gi|20515450|gb|AAM23745.1| Cytidine deaminase [Thermoanaerobacter tengcongensis MB4]
Length = 135
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + K A+ A P S F VGA L G I+ G N+E L ++ AE+ + N
Sbjct: 9 LIEIAKEARENAYAPYSNFKVGACVLTEDGNIYKGCNIENASFGL--TVCAERVAMFNAY 66
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E +L+ +AV A +PCG CRQ + EL D+ + ++++ + + LL
Sbjct: 67 SGGERKLKAIAVVADTDGPVSPCGACRQVMMEL-GGEDMVVILSNMKG-DHAIMTVRDLL 124
Query: 142 PDRFGPNDL 150
P F D+
Sbjct: 125 PGAFTSKDM 133
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV-AY 241
E+L A EA ++APYS G ++ +GNIYKG +E+A++ ++ + A+ AY
Sbjct: 7 EKLIEIAKEARENAYAPYSNFKVGACVLTEDGNIYKGCNIENASFGLTVCAERVAMFNAY 66
Query: 242 LAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
GG ++ A A+V D V A R ++
Sbjct: 67 ---------SGGERKLKAIAVVADTDGPVSPCGACRQVM 96
>gi|376255031|ref|YP_005143490.1| Cytidine deaminase [Corynebacterium diphtheriae PW8]
gi|372118115|gb|AEX70585.1| Cytidine deaminase [Corynebacterium diphtheriae PW8]
Length = 140
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI---LNAEPRLQHLA 98
P S F VGA L ++G IF G NVE +I AE+ IT +I + A+ R H+A
Sbjct: 25 PYSNFPVGAAVLTTAGEIFTGCNVE--NAAYGDTICAERNAITTMIAATMRADER--HIA 80
Query: 99 VSA---------APCGHCRQFLQELRNTSDINICITSINSNER---KYHPLSHLLPDRFG 146
A PCG CRQ L+E C T I +E P + LLP FG
Sbjct: 81 AVAIVGLKASPCWPCGSCRQVLREFH-------CETVIVEDESGSPTSLPFAELLPYSFG 133
Query: 147 PNDLLD 152
P L D
Sbjct: 134 PEALKD 139
>gi|403287459|ref|XP_003934962.1| PREDICTED: cytidine deaminase [Saimiri boliviensis boliviensis]
gi|403287461|ref|XP_003934963.1| PREDICTED: cytidine deaminase [Saimiri boliviensis boliviensis]
Length = 146
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKHPACTLKPECVQRLLVCSQEAKKSAYCPYSHFPVGAALLTQDGRIFQGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I I + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAISEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWAVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYVVMTVQELLPSSFGPEDL 142
>gi|381181733|ref|ZP_09890566.1| cytidine deaminase [Treponema saccharophilum DSM 2985]
gi|380766519|gb|EIC00525.1| cytidine deaminase [Treponema saccharophilum DSM 2985]
Length = 129
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + A+ A P SK+ VGA L G +F G N+E P I E+ ++ I
Sbjct: 6 LVEMALDARKNAYTPYSKYQVGAALLCDDGTVFTGCNIESASYPC--GICGERTAMSKAI 63
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ +A++ + PCG CRQF+ E ++ + S N+ + + H L+ LL
Sbjct: 64 SEGHIKFTKIAIAGSSEKICTPCGMCRQFMYEFNPNLEV---LCSDNAGKFEKHTLADLL 120
Query: 142 PDRFGPNDL 150
FG + +
Sbjct: 121 SCGFGSSSM 129
>gi|52081077|ref|YP_079868.1| cytidine/deoxycytidine deaminase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319644965|ref|ZP_07999198.1| cdd protein [Bacillus sp. BT1B_CT2]
gi|404489959|ref|YP_006714065.1| cytidine deaminase Cdd [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423683055|ref|ZP_17657894.1| cytidine/deoxycytidine deaminase [Bacillus licheniformis WX-02]
gi|52004288|gb|AAU24230.1| cytidine/deoxycytidine deaminase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348958|gb|AAU41592.1| cytidine deaminase Cdd [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392774|gb|EFV73568.1| cdd protein [Bacillus sp. BT1B_CT2]
gi|383439829|gb|EID47604.1| cytidine/deoxycytidine deaminase [Bacillus licheniformis WX-02]
Length = 136
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+T +L+ +K A+ A P SKF VGA L G+++ G N+E L AE+
Sbjct: 1 MTKQELIAEALK-AREFAYVPYSKFKVGAALLTEDGKVYKGCNIENAAYSLCNC--AERT 57
Query: 82 LITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYH 135
+ E + LAV+A +PCG CRQ + EL + ++ + +T++N + K
Sbjct: 58 ALFKAYSEGEKSFKMLAVAADTPGPVSPCGACRQVISEL-CSPNMPVILTNLN-GQVKEM 115
Query: 136 PLSHLLPDRFGPNDLLD 152
+ LLP F DL D
Sbjct: 116 TVQELLPGAFSSEDLHD 132
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
K+ L AL+A ++ PYSK G A++ +G +YKG +E+AAY+
Sbjct: 3 KQELIAEALKAREFAYVPYSKFKVGAALLTEDGKVYKGCNIENAAYS 49
>gi|375293793|ref|YP_005128333.1| Cytidine deaminase [Corynebacterium diphtheriae INCA 402]
gi|376243539|ref|YP_005134391.1| Cytidine deaminase [Corynebacterium diphtheriae CDCE 8392]
gi|376252013|ref|YP_005138894.1| Cytidine deaminase [Corynebacterium diphtheriae HC03]
gi|376257831|ref|YP_005145722.1| Cytidine deaminase [Corynebacterium diphtheriae VA01]
gi|371583465|gb|AEX47131.1| Cytidine deaminase [Corynebacterium diphtheriae INCA 402]
gi|372106781|gb|AEX72843.1| Cytidine deaminase [Corynebacterium diphtheriae CDCE 8392]
gi|372113517|gb|AEX79576.1| Cytidine deaminase [Corynebacterium diphtheriae HC03]
gi|372120348|gb|AEX84082.1| Cytidine deaminase [Corynebacterium diphtheriae VA01]
Length = 140
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI---LNAEPRLQHLA 98
P S F VGA L ++G IF G NVE +I AE+ IT +I + A+ R H+A
Sbjct: 25 PYSNFPVGAAVLTTAGEIFTGCNVE--NAAYGDTICAERNAITTMIAATMRADER--HIA 80
Query: 99 VSA---------APCGHCRQFLQELRNTSDINICITSINSNER---KYHPLSHLLPDRFG 146
A PCG CRQ L+E C T I +E P + LLP FG
Sbjct: 81 AVAIVGLKASPCWPCGSCRQVLREFH-------CETVIVEDESGNPTSLPFAELLPYSFG 133
Query: 147 PNDLLD 152
P L D
Sbjct: 134 PEALKD 139
>gi|150398529|ref|YP_001328996.1| cytidine deaminase [Sinorhizobium medicae WSM419]
gi|150030044|gb|ABR62161.1| cytidine deaminase [Sinorhizobium medicae WSM419]
Length = 152
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA G+I+ G N+E P + AE I+++++ +
Sbjct: 32 REAMAKAHAPYSKFPVGAAIRAEDGKIYTGANIENLSFP--EGWCAETTAISHMVMAGQR 89
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ L E S I +C + RK LS LLP F
Sbjct: 90 KITEVAVVAEKLALCPPCGGCRQRLAEFSGASTRIYLC---DETGIRKTLALSDLLPHSF 146
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
K+ L AA EA K+HAPYSK P G AI +G IY G+ +E+ ++
Sbjct: 24 KDELFVAAREAMAKAHAPYSKFPVGAAIRAEDGKIYTGANIENLSF 69
>gi|430758712|ref|YP_007208929.1| cytidine deaminase [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430023232|gb|AGA23838.1| Cytidine deaminase [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 131
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L T A+ +A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFK 61
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERK 133
+ E Q LAV+A +PCG CRQ + EL T D+ + +T++ ++
Sbjct: 62 AVSEGETEFQMLAVAADTPGPVSPCGACRQVISEL-CTKDVIVVLTNLQGQIKR 114
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
++ L AL+A + ++APYSK G A++ +G +Y+G +E+AAY+
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYS 49
>gi|124027705|ref|YP_001013025.1| cytidine deaminase [Hyperthermus butylicus DSM 5456]
gi|123978399|gb|ABM80680.1| Cytidine deaminase [Hyperthermus butylicus DSM 5456]
Length = 150
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S HV AV L G ++LG NVE L +I AE+ + +I R++ +A+ +
Sbjct: 25 PYSGVHVAAVVLADDGTVYLGVNVENVSYGL--TICAERAAVAAMITAGRRRIKAVAIVS 82
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
PCG CRQ + E + D I S+ + E + L LLPD P
Sbjct: 83 DTTLPLPPCGACRQVIAEFAD-DDTVIASRSLVTGETRVWRLRDLLPDPVKP 133
>gi|87198171|ref|YP_495428.1| cytidine deaminase [Novosphingobium aromaticivorans DSM 12444]
gi|87133852|gb|ABD24594.1| cytidine deaminase [Novosphingobium aromaticivorans DSM 12444]
Length = 145
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+ L ++A A P S FHVGA L G I G NVE L S+ AE + +
Sbjct: 11 EALVAAARTAMGTAYAPYSGFHVGAALLFEDGAIVTGANVENASYGL--SLCAET-VACS 67
Query: 86 LILNAEPRLQHLAVSAA------------PCGHCRQFLQELRNTSDINICITSINSNERK 133
+ +A R LAV+ + PCG CRQ L EL + + ++ E
Sbjct: 68 IAAHAGRRGGLLAVAVSGGAGGRADAAISPCGRCRQVLNELAALGGTDPLVICTSAKETV 127
Query: 134 YHPLSHLLPDRFGPNDL 150
LS LLP+ FGP +L
Sbjct: 128 EMRLSALLPNAFGPANL 144
>gi|313126388|ref|YP_004036658.1| cytidine deaminase [Halogeometricum borinquense DSM 11551]
gi|448286230|ref|ZP_21477465.1| cytidine deaminase [Halogeometricum borinquense DSM 11551]
gi|312292753|gb|ADQ67213.1| cytidine deaminase [Halogeometricum borinquense DSM 11551]
gi|445575281|gb|ELY29760.1| cytidine deaminase [Halogeometricum borinquense DSM 11551]
Length = 137
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 30 TLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
+LV A+ + A P S++ VGA + G +F+G N+E S+HAE+ +
Sbjct: 4 SLVTRAREMLEQAHVPYSEYRVGAALRTADGEVFVGCNIENANYS--NSLHAEEVAVAEA 61
Query: 87 ILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
I N LAV++ PCG CRQ L E + + +C E + L L
Sbjct: 62 IKNGHREFDRLAVTSGARDGVTPCGMCRQTLAEFCDEDLVVVC--DEGGEETTEYTLGEL 119
Query: 141 LPDRFGPNDL 150
LP+ + L
Sbjct: 120 LPNTISLDTL 129
>gi|376288460|ref|YP_005161026.1| Cytidine deaminase [Corynebacterium diphtheriae BH8]
gi|419861517|ref|ZP_14384149.1| cytidine deaminase [Corynebacterium diphtheriae bv. intermedius
str. NCTC 5011]
gi|371585794|gb|AEX49459.1| Cytidine deaminase [Corynebacterium diphtheriae BH8]
gi|387981988|gb|EIK55509.1| cytidine deaminase [Corynebacterium diphtheriae bv. intermedius
str. NCTC 5011]
Length = 140
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI---LNAEPRLQHLA 98
P S F VGA L ++G IF G NVE +I AE+ IT +I + A+ R H+A
Sbjct: 25 PYSNFPVGAAVLTTAGEIFTGCNVE--NAAYGDTICAERNAITTMIAATMRADER--HIA 80
Query: 99 VSA---------APCGHCRQFLQELRNTSDINICITSINSNER---KYHPLSHLLPDRFG 146
A PCG CRQ L+E C T I +E P + LLP FG
Sbjct: 81 AVAIVGLKASPCWPCGSCRQVLREFH-------CETVIVEDESGNPTSLPFAELLPYSFG 133
Query: 147 PNDLLD 152
P L D
Sbjct: 134 PEALKD 139
>gi|396585041|ref|ZP_10485476.1| putative cytidine deaminase [Actinomyces sp. ICM47]
gi|395547258|gb|EJG14734.1| putative cytidine deaminase [Actinomyces sp. ICM47]
Length = 160
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
A T A P S F VGA GL + GRI G NVE G + ++ AE ++++LI
Sbjct: 15 DAMTHAYCPYSHFPVGAAGLSADGRIVSGCNVENAGYGV--ALCAECGMVSDLIRTGGGT 72
Query: 94 LQHLA------VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
L + V APCG CRQ + E S C+ + ++ +LP FGP
Sbjct: 73 LVAVVAVNGDRVPVAPCGRCRQLIYEHGGPS----CLVLMPGGVAD---MTQVLPGAFGP 125
Query: 148 NDL 150
+DL
Sbjct: 126 HDL 128
>gi|302524165|ref|ZP_07276507.1| cytidine deaminase [Streptomyces sp. AA4]
gi|302433060|gb|EFL04876.1| cytidine deaminase [Streptomyces sp. AA4]
Length = 129
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S HVG + GR G NVE L + AE + L L+ RL +A +
Sbjct: 23 PYSGLHVGVAAIVDDGRQVTGCNVENASYGL--GLCAECTMAGQLRLSGGGRLVAVACRS 80
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L EL +S C+ R P+S +LPD FGP DL
Sbjct: 81 GAGELLMPCGRCRQILFELGGSS----CLVD---TPRGVLPMSEVLPDAFGPEDL 128
>gi|119717759|ref|YP_924724.1| cytidine deaminase [Nocardioides sp. JS614]
gi|119538420|gb|ABL83037.1| cytidine deaminase [Nocardioides sp. JS614]
Length = 133
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + A A P S+F VGA L GR +G NVE + + AE L++ L
Sbjct: 13 LKAAAEEAMRHAYVPYSRFSVGAAALVDDGRTVVGCNVENASYGV--GLCAECGLVSQLH 70
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
++ RL H PCG CRQ L E + + +++ +R + +L
Sbjct: 71 ISGGGRLTHFVCVNGEREIIMPCGRCRQLLHE---NGGPGLLLWTVSGVKR----MDEVL 123
Query: 142 PDRFGPNDL 150
PD FGP+DL
Sbjct: 124 PDAFGPDDL 132
>gi|373859077|ref|ZP_09601809.1| cytidine deaminase [Bacillus sp. 1NLA3E]
gi|372451168|gb|EHP24647.1| cytidine deaminase [Bacillus sp. 1NLA3E]
Length = 132
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ A P SKF VGA L G+++ G N+E + AE+ + + + +
Sbjct: 11 KVAREKAYVPYSKFKVGAALLTVDGKVYHGCNIENAAYSMTNC--AERTALFKAVSDGDT 68
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A +PCG CRQ + E + D+ + ++++ + R+ + LLP F
Sbjct: 69 EFAMLAVIADTEGPVSPCGACRQVISEF-CSKDMLVVLSNLKGDIRE-TSVGDLLPGAFS 126
Query: 147 PNDLLD 152
P DL D
Sbjct: 127 PEDLND 132
>gi|295091385|emb|CBK77492.1| cytidine deaminase [Clostridium cf. saccharolyticum K10]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
MER E E E K L L A A P S FHV A L G +F
Sbjct: 1 MERHGMDEERKETEKENWKQSLISSAL------GALERAYAPYSGFHVAAALLCGDGSVF 54
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA----------APCGHCRQF 110
G NVE P I AE+ + + + + +A+ APCG CRQ
Sbjct: 55 TGCNVENASYP--AGICAERSAFSAAVSSGKREFTAIAIVGGRDGKTESYCAPCGICRQV 112
Query: 111 LQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
++E + I + + ++Y L LLP+ FGP +L
Sbjct: 113 MREFCRPDEFLILLARTPEDYKEY-TLEELLPESFGPENL 151
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
E EN K+ L +AL A +++APYS A++ +G+++ G +E+A+Y + ++
Sbjct: 14 EKENWKQSLISSALGALERAYAPYSGFHVAAALLCGDGSVFTGCNVENASYPAGICAERS 73
Query: 237 ALVAYLAAG 245
A A +++G
Sbjct: 74 AFSAAVSSG 82
>gi|257125649|ref|YP_003163763.1| cytidine deaminase [Leptotrichia buccalis C-1013-b]
gi|257049588|gb|ACV38772.1| cytidine deaminase [Leptotrichia buccalis C-1013-b]
Length = 136
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
S+ +K L+ + + L+K+A P S+F V A+ + +GR G NVE L
Sbjct: 2 SLNEKEILSYINEVNLLLKNAYV----PYSQFPVAALLIDDNGRKHKGVNVENASFGL-- 55
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSIN 128
+I AE+ IT I +++ L ++ +PCG CRQ ++E + I I +
Sbjct: 56 TICAERNAITTAITENMKKIKVLVITGNTPEPISPCGACRQVIREFSDKD--TIIILANK 113
Query: 129 SNERKYHPLSHLLPDRFGPNDL 150
N+ K + LLP FG DL
Sbjct: 114 ENKYKITSIEELLPYSFGAEDL 135
>gi|260889554|ref|ZP_05900817.1| cytidine deaminase [Leptotrichia hofstadii F0254]
gi|260860965|gb|EEX75465.1| cytidine deaminase [Leptotrichia hofstadii F0254]
Length = 138
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P SKF V A+ + +G G NVE L ++ AE+ IT I +++ L
Sbjct: 25 AYVPYSKFPVAALLIDDNGNKHKGVNVENASFGL--TLCAERNAITTAITENMKKIKLLV 82
Query: 99 VSA------APCGHCRQFLQELRNTSDINICITSINSNERKYH--PLSHLLPDRFGPNDL 150
V+ +PCG CRQ ++E SD I N N RKY L LLP FGP DL
Sbjct: 83 VTGNTPEPISPCGACRQVIKEF---SDKETVIILTNKN-RKYRITSLDELLPYSFGPEDL 138
>gi|268536108|ref|XP_002633189.1| C. briggsae CBR-CDD-2 protein [Caenorhabditis briggsae]
Length = 166
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG I LG NVE +I AE+ + + +
Sbjct: 18 LARTAMKRAHCPYSKFPVGAALLTESGDIILGCNVE--NASYGGTICAERSAVVSAVSQG 75
Query: 91 EPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + ++V A+PCG CRQFL E D + I + +++ LLP
Sbjct: 76 HTKFRAISVVTELSEPASPCGLCRQFLVEF---GDFKVIIGTAFNSKTLITSTRELLPFA 132
Query: 145 FGPNDL 150
F P L
Sbjct: 133 FTPESL 138
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A A ++H PYSK P G A++ G+I G +E+A+Y ++ ++A+V+ ++ G
Sbjct: 19 ARTAMKRAHCPYSKFPVGAALLTESGDIILGCNVENASYGGTICAERSAVVSAVSQG 75
>gi|345566805|gb|EGX49747.1| hypothetical protein AOL_s00078g236 [Arthrobotrys oligospora ATCC
24927]
Length = 154
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
SA++LA P S F VG L + G LG N+E P+ +I AE+ +++ +
Sbjct: 24 SAKSLAYCPYSNFRVGCAILCADGSYVLGANIENASYPV--TICAERTAFGKAVVDGKRE 81
Query: 94 ---LQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSN-ERKYHPLSHLLPD 143
+ + VS A+PCG CRQF++E D+ I +S E L LLP
Sbjct: 82 SGGFKAVGVSTDISPPASPCGMCRQFIREF---CDLKTPIFMWDSKGEYIVMTLEQLLPM 138
Query: 144 RFGPNDLLDKD 154
FGP+ L D
Sbjct: 139 SFGPDQLHKPD 149
>gi|344305552|gb|EGW35784.1| hypothetical protein SPAPADRAFT_58993 [Spathaspora passalidarum
NRRL Y-27907]
Length = 147
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
V A++L+ P SKF VG L +S G N+E SI AE+ I+ IL+
Sbjct: 24 VLKAKSLSYSPYSKFRVGCTILTASNEFISGANIE--NASYGASICAERTTISKAILSGH 81
Query: 92 PRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ +A+S+ +PCG CRQ ++E D+ + + + K + ++ LLP
Sbjct: 82 TTFKVIAISSDQEDDFISPCGICRQVIREF--AKDVPVYMFKSSGEFIKVY-MNDLLPLS 138
Query: 145 FGPNDLL 151
FGP +LL
Sbjct: 139 FGPENLL 145
>gi|397904342|ref|ZP_10505259.1| Cytidine deaminase [Caloramator australicus RC3]
gi|343179089|emb|CCC58158.1| Cytidine deaminase [Caloramator australicus RC3]
Length = 133
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + ++ A P S F VGA L G+IF G N+E ++ AE+ + I
Sbjct: 6 LVEIANKSKENAYVPYSNFRVGAALLTEEGKIFTGCNIE--NASYGGTVCAERTALFKAI 63
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ + +A+++ PCG CRQ + E D+ I S N E K L+ LL
Sbjct: 64 SEGYNKFRAIAITSDSPNLTFPCGICRQVMSEFGLDIDV---IVSNNKGEYKVFKLNELL 120
Query: 142 PDRFGPNDL 150
P F +D+
Sbjct: 121 PYAFSSDDM 129
>gi|393771766|ref|ZP_10360234.1| cytidine deaminase [Novosphingobium sp. Rr 2-17]
gi|392722777|gb|EIZ80174.1| cytidine deaminase [Novosphingobium sp. Rr 2-17]
Length = 151
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 59/127 (46%), Gaps = 19/127 (14%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR---LQHLA 98
P S FHVGA L S GRI G NVE L ++ AE + ++ +E R L+ +A
Sbjct: 28 PYSGFHVGAALLLSDGRIVTGANVENASYGL--ALCAETVAVAKIL--SEGRRGGLEAVA 83
Query: 99 VSAA-----------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
V+ PCG CRQ L EL + I + LS LLP FGP
Sbjct: 84 VTGGAPGAPGQATVTPCGRCRQVLNELAALGKTDPIIWCDGPDGGLELRLSELLPHAFGP 143
Query: 148 NDL-LDK 153
+DL LD+
Sbjct: 144 SDLGLDQ 150
>gi|357055239|ref|ZP_09116313.1| cytidine deaminase [Clostridium clostridioforme 2_1_49FAA]
gi|355383195|gb|EHG30281.1| cytidine deaminase [Clostridium clostridioforme 2_1_49FAA]
Length = 138
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S FHV A L G+++ G N+E I AE+ + E + + +
Sbjct: 20 PYSHFHVSAALLCRDGKVYTGNNIE--NAAYSPGICAERCAFAKAVSEGEREFEAIVICG 77
Query: 102 A----------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E N I I + ++ E + + L+ LLP+ FGP+ L
Sbjct: 78 GPDGKAGDYCPPCGVCRQVMREFCNPDSFCI-ILAKSAEEYREYTLAQLLPESFGPDHL 135
>gi|426328168|ref|XP_004024873.1| PREDICTED: cytidine deaminase [Gorilla gorilla gorilla]
Length = 146
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKRPTCTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYIVMTVQELLPSSFGPEDL 142
>gi|402853253|ref|XP_003891312.1| PREDICTED: cytidine deaminase [Papio anubis]
gi|355557630|gb|EHH14410.1| hypothetical protein EGK_00332 [Macaca mulatta]
gi|355744988|gb|EHH49613.1| hypothetical protein EGM_00303 [Macaca fascicularis]
Length = 146
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVLQ-----LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK LQ L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKPPACTLQPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFKAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYVVMTVQELLPSSFGPEDL 142
>gi|168335271|ref|ZP_02693372.1| cytidine deaminase [Epulopiscium sp. 'N.t. morphotype B']
Length = 128
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+ L+LL K A+ + S FHVGA +G+SG ++LG NVE G + AE+
Sbjct: 1 MDYLELLKQAEK-AKKFSYANYSNFHVGAALIGASGTVYLGANVE--GASYGVTTCAERT 57
Query: 82 LITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSN-ERKY 134
I E + +A+ + PCG CRQ + + D N I NSN E +
Sbjct: 58 AFYKAITEGERKFTTIAIISDSDKIIYPCGICRQVMSDF---VDDNFVIICGNSNLEYEV 114
Query: 135 HPLSHLLP 142
+ L+P
Sbjct: 115 YTFEQLMP 122
>gi|149186343|ref|ZP_01864656.1| cytidine deaminase [Erythrobacter sp. SD-21]
gi|148829932|gb|EDL48370.1| cytidine deaminase [Erythrobacter sp. SD-21]
Length = 134
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA-EPRLQHLAVS 100
P S+F VG+ L + G + G N+E L ++ AE ++ + + L+ +AV+
Sbjct: 20 PYSRFAVGSALLFADGSVVTGTNIENASYGL--ALCAETVAVSKAMADGVRGGLEKVAVT 77
Query: 101 A------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151
PCG CRQ L EL + I + +E + LS LLPD FGP L+
Sbjct: 78 GPGDMPITPCGRCRQVLNELAQLGGTDPEILCVGPDEVRRTRLSALLPDAFGPASLV 134
>gi|313231433|emb|CBY08547.1| unnamed protein product [Oikopleura dioica]
gi|313241003|emb|CBY33306.1| unnamed protein product [Oikopleura dioica]
gi|313241007|emb|CBY33310.1| unnamed protein product [Oikopleura dioica]
Length = 263
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 12 EAESMAQKSGLTVLQLLPTLV-KSAQTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFP 68
EAE Q+ + + +L +V K+ Q L + SKFHVGA L + G+ F G NVE
Sbjct: 119 EAEVRDQQGEVISMAVLQDMVSKAKQNLEKAYCTYSKFHVGASLLTTKGQ-FDGVNVENA 177
Query: 69 GLPLHQSIHAEQFLITNLI-LNAEPRLQHLAVS--------AAPCGHCRQFLQELRNTSD 119
L +I AE+ + + I + + + +A++ AAPCG CRQFL E D
Sbjct: 178 SYGL--TICAERSAMCSAISQHGKHEFRAIAIATTSPHDTWAAPCGACRQFLVEF---GD 232
Query: 120 INICITSINSNERKYHPLSHLLPDRFGPNDL 150
+ +T+ + K LLPD F P+D+
Sbjct: 233 FPVILTNNKDEKVKIIKTKELLPDCFCPDDM 263
>gi|377566345|ref|ZP_09795605.1| cytidine deaminase [Gordonia sputi NBRC 100414]
gi|377526413|dbj|GAB40770.1| cytidine deaminase [Gordonia sputi NBRC 100414]
Length = 133
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 57/120 (47%), Gaps = 19/120 (15%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S F VGA L RI +G NVE + I AE L+ +LI + RL ++
Sbjct: 21 AYAPYSSFPVGASALTDDDRIVVGCNVE--NVSYGLGICAEVGLVASLIASGGGRLLAVS 78
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP--LSHLLPDRFGPNDL 150
V A PCG CRQ L E D+ + + + P L+ LLPD FGP+DL
Sbjct: 79 VCDATGSILMPCGRCRQVLYE-HGGGDLLV--------DHRAGPTTLARLLPDAFGPDDL 129
>gi|11386157|ref|NP_001776.1| cytidine deaminase [Homo sapiens]
gi|114554458|ref|XP_001161389.1| PREDICTED: cytidine deaminase isoform 2 [Pan troglodytes]
gi|397486674|ref|XP_003814450.1| PREDICTED: cytidine deaminase [Pan paniscus]
gi|1705718|sp|P32320.2|CDD_HUMAN RecName: Full=Cytidine deaminase; AltName: Full=Cytidine
aminohydrolase
gi|598149|gb|AAA57254.1| cytidine deaminase [Homo sapiens]
gi|2769252|emb|CAA04113.1| cytidine deaminase [Homo sapiens]
gi|4321793|gb|AAD15828.1| cytidine deaminase [Homo sapiens]
gi|119615338|gb|EAW94932.1| cytidine deaminase, isoform CRA_b [Homo sapiens]
gi|410209450|gb|JAA01944.1| cytidine deaminase [Pan troglodytes]
gi|410247368|gb|JAA11651.1| cytidine deaminase [Pan troglodytes]
gi|410301170|gb|JAA29185.1| cytidine deaminase [Pan troglodytes]
gi|410341749|gb|JAA39821.1| cytidine deaminase [Pan troglodytes]
Length = 146
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYIVMTVQELLPSSFGPEDL 142
>gi|381164408|ref|ZP_09873638.1| cytidine deaminase, homotetrameric [Saccharomonospora azurea
NA-128]
gi|418460516|ref|ZP_13031609.1| cytidine deaminase [Saccharomonospora azurea SZMC 14600]
gi|359739397|gb|EHK88264.1| cytidine deaminase [Saccharomonospora azurea SZMC 14600]
gi|379256313|gb|EHY90239.1| cytidine deaminase, homotetrameric [Saccharomonospora azurea
NA-128]
Length = 132
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
SA A P S+ VGA L GRI G NVE + + AE + L L+ R
Sbjct: 17 SAAQKAYAPYSRLRVGAAALTDDGRIVTGCNVENASYGV--GLCAECTMTGQLRLSGGGR 74
Query: 94 LQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+A + PCG CRQ L E T C+ + P++ +LP FGP
Sbjct: 75 FVAVACRSGEGELLMPCGRCRQLLYEFGGTE----CLVDTPAG---VQPMTAVLPQAFGP 127
Query: 148 NDL 150
DL
Sbjct: 128 EDL 130
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
ERL+ A AA K++APYS+ G A + +G I G +E+A+Y L
Sbjct: 9 ERLRAEATSAAQKAYAPYSRLRVGAAALTDDGRIVTGCNVENASYGVGL 57
>gi|258575469|ref|XP_002541916.1| cytidine deaminase [Uncinocarpus reesii 1704]
gi|237902182|gb|EEP76583.1| cytidine deaminase [Uncinocarpus reesii 1704]
Length = 142
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S F VGA L G F+G NVE P+ I AE+ I + + +AV++
Sbjct: 28 PYSHFRVGASLLTEDGTYFIGANVENASYPV--GICAEKNAIGTAVTAGHKSFRAVAVAS 85
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKY--HPLSHLLPDRFGPNDL 150
+PCG CRQF+++ S + + KY + LLPD FGP DL
Sbjct: 86 DIIPGTSPCGSCRQFMRQFCPPS----LPIYMYGTDGKYVMKTMGELLPDSFGPEDL 138
>gi|116181992|ref|XP_001220845.1| hypothetical protein CHGG_01624 [Chaetomium globosum CBS 148.51]
gi|88185921|gb|EAQ93389.1| hypothetical protein CHGG_01624 [Chaetomium globosum CBS 148.51]
Length = 172
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA-- 90
+ A+T A P S+F VGA L ++G LG NVE P+ + AE+ + +++
Sbjct: 35 QDAKTRAYCPYSRFRVGAALLTAAGDYVLGANVENASYPV--TTCAERVALGRAVVDGYH 92
Query: 91 -EPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERK-YHPLSHLLP 142
+ +AV+ A+PCG CRQF++E D+++ I + + L LLP
Sbjct: 93 LRGGFRAVAVATDAGEPASPCGMCRQFIREF---CDLSVPIIMFDKDTNYVVMKLEELLP 149
Query: 143 DRFGPNDL 150
FGP++L
Sbjct: 150 LSFGPDNL 157
>gi|402302724|ref|ZP_10821831.1| cytidine deaminase [Selenomonas sp. FOBRC9]
gi|400380140|gb|EJP32966.1| cytidine deaminase [Selenomonas sp. FOBRC9]
Length = 136
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA L SGR++ G NVE P+ I AE+ I + + E LAV A
Sbjct: 20 PYSRFAVGAALLARSGRVYGGVNVENASYPV--GICAERAAIARAVTDGERAFDALAVVA 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKD 154
APCG CRQ + E + + ++ + + P + LLP FG L K+
Sbjct: 78 DTPDVCAPCGMCRQVMAEFPIR---RVILANLRGDMHVFSP-AELLPHAFGAAALPAKE 132
>gi|317418859|emb|CBN80897.1| Cytidine deaminase [Dicentrarchus labrax]
Length = 165
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQ---TLARPPISKFHVGAVGLGSSG 57
M++ +F E + SG ++ L++ +Q T A P SKF VGA L
Sbjct: 1 MDQVKFSREVMNIKD--HSSGHLSQDMVKKLIQQSQEAKTQAYCPYSKFRVGAALLTPDN 58
Query: 58 RIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQF 110
+F G NVE L + AE+ I+ + + +A+++ +PCG CRQF
Sbjct: 59 CVFTGCNVENACYNL--GVCAERNAISRAVSEGHRSFKAIAIASDLDDQFISPCGGCRQF 116
Query: 111 LQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDV 155
++E D+ + S +S LLP FGP DL K V
Sbjct: 117 MREFGPNWDVYL---SKPDGSYLQMTVSELLPASFGPEDLSMKKV 158
>gi|162454139|ref|YP_001616506.1| cytidine deaminase [Sorangium cellulosum So ce56]
gi|161164721|emb|CAN96026.1| putative Cytidine deaminase [Sorangium cellulosum So ce56]
Length = 154
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF 60
M RP +A +A + A+ + L + +T A P S + VGA L SGR+F
Sbjct: 1 MSRPPR--DAGDALASAEAAQTIDWDALDQAALAVRTRAHAPYSSYRVGAAILVRSGRVF 58
Query: 61 LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQEL 114
G NVE L +I AE+ I ++ E L V+ +PCG CRQ L E
Sbjct: 59 TGCNVENASYGL--TICAERSAIVQMVAAGERDPIALTVATSGPVLGSPCGMCRQTLAEF 116
Query: 115 RNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
I + + LS LLP+ FG L
Sbjct: 117 AVDFPIRLIAAEAGGVAPRTTSLSALLPEAFGAAAL 152
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ L AAL ++HAPYS G AI+ G ++ G +E+A+Y ++ ++A+V +
Sbjct: 24 DALDQAALAVRTRAHAPYSSYRVGAAILVRSGRVFTGCNVENASYGLTICAERSAIVQMV 83
Query: 243 AAG 245
AAG
Sbjct: 84 AAG 86
>gi|328950641|ref|YP_004367976.1| cytidine deaminase [Marinithermus hydrothermalis DSM 14884]
gi|328450965|gb|AEB11866.1| cytidine deaminase [Marinithermus hydrothermalis DSM 14884]
Length = 128
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L TL K A A P S+F V A +SG ++LG NVE PL + AEQ + L+
Sbjct: 4 LLTLAKHALEHAYAPYSRFPVAAAVRSASGAVYLGVNVENSAYPLSRC--AEQIAVGALV 61
Query: 88 LNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
E + + + A PCG CRQ L E + C+ + E + L+ LL
Sbjct: 62 TAGEREIAEVVIYSTSSPPATPCGACRQILAEFGRPNTRVRCVNP--AGETREFTLAELL 119
Query: 142 PDRF 145
P F
Sbjct: 120 PHAF 123
>gi|374583191|ref|ZP_09656285.1| cytidine deaminase, homotetrameric [Desulfosporosinus youngiae DSM
17734]
gi|374419273|gb|EHQ91708.1| cytidine deaminase, homotetrameric [Desulfosporosinus youngiae DSM
17734]
Length = 154
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 16/144 (11%)
Query: 17 AQKSGLTVLQLLPTLV---KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
A+ G +LL L+ K+A A P S + VG+ + SSG I+ G NVE L
Sbjct: 14 AEIRGTIAPELLDELIHQAKAAYEHAYVPYSHYPVGSAAVFSSGTIYSGCNVENSSYGL- 72
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSI 127
+I AE+ I I E L+ +A++ +PCG CRQ ++E ++ + +
Sbjct: 73 -TICAERNAIFKAIARGERELKGIAIAVPSDVFPSPCGACRQVIREF----AVDCPVILV 127
Query: 128 NSN-ERKYHPLSHLLPDRFGPNDL 150
N + ++ L LLP+ FGP L
Sbjct: 128 NGQGQVRWTSLKRLLPEAFGPEFL 151
>gi|320530450|ref|ZP_08031508.1| cytidine deaminase [Selenomonas artemidis F0399]
gi|320137283|gb|EFW29207.1| cytidine deaminase [Selenomonas artemidis F0399]
Length = 136
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA L SGR++ G NVE P+ I AE+ I + + E LAV A
Sbjct: 20 PYSRFAVGAALLARSGRVYGGVNVENASYPV--GICAERAAIARAVTDGERAFDALAVVA 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKD 154
APCG CRQ + E + + ++ + + P + LLP FG L K+
Sbjct: 78 DTPDVCAPCGMCRQVMAEFPIR---RVILANLRGDMHVFSP-AELLPHAFGAAALPAKE 132
>gi|302926760|ref|XP_003054358.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735299|gb|EEU48645.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 165
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 1 MERPRFVI--EAAEAESMAQKSGLTVLQL--LPTLVKSAQTLARPPISKFHVGAVGLGSS 56
ME P + +AA + ++ G+T + L +A+ A P S+F VGA L
Sbjct: 1 METPETISKGDAARTAEICEQHGITPNEFSELRQRATAAKATAYCPYSRFRVGATVLSGE 60
Query: 57 GRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQF 110
G+ G NVE P+ AE+ + + + +AV+ A+PCG CRQF
Sbjct: 61 GQFIDGANVENASYPVGTC--AERVALGTAVTGGHRGFRAVAVATDIAPPASPCGMCRQF 118
Query: 111 LQELRNTSDINICITSINSNER-KYHPLSHLLPDRFGPNDL 150
++E + I + NE L LLP FGP+ L
Sbjct: 119 IREF---CTLETPIIMFDKNEDFVVVKLGQLLPMSFGPDQL 156
>gi|32450432|gb|AAH54036.1| Cytidine deaminase [Homo sapiens]
gi|312153078|gb|ADQ33051.1| cytidine deaminase [synthetic construct]
Length = 146
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKRPACTLKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYIVMTVQELLPSSFGPEDL 142
>gi|448738943|ref|ZP_21720963.1| cytidine deaminase [Halococcus thailandensis JCM 13552]
gi|445800757|gb|EMA51105.1| cytidine deaminase [Halococcus thailandensis JCM 13552]
Length = 131
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + A A P S++ VGA + G +FLG N+E S+HAE+ + +
Sbjct: 6 LIDRARDATASAHVPYSEYRVGAALETADGTVFLGCNIENANYS--NSLHAEEVALAEAV 63
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
N LAV+++ PCG CRQ L E D + + R + L LL
Sbjct: 64 KNGHHDFARLAVASSEHDGVLPCGMCRQSLSEF---CDDDFRVLCDEGESRSEYRLGELL 120
Query: 142 PD 143
PD
Sbjct: 121 PD 122
>gi|269123291|ref|YP_003305868.1| cytidine deaminase [Streptobacillus moniliformis DSM 12112]
gi|268314617|gb|ACZ00991.1| cytidine deaminase [Streptobacillus moniliformis DSM 12112]
Length = 139
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SK+ V AV + S G + G NVE L +I AE+ I + I ++ + ++
Sbjct: 26 PYSKYKVAAVMIDSEGNLHEGVNVENASYGL--TICAERNAIASSITKGMKKIDLIVITG 83
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+PCG CRQ ++E + D I + S S E + ++P FGP DL
Sbjct: 84 DVDNPISPCGMCRQVIREF-SKKDTLIVLASSRSKEYILWTVEEMIPYSFGPEDL 137
>gi|198422786|ref|XP_002128380.1| PREDICTED: similar to cytidine deaminase [Ciona intestinalis]
Length = 145
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + + A+ A P SKF VGA + GRIF G NVE G +I AE+ I I
Sbjct: 9 LLEMAREAKKFAYNPYSKFRVGAALVTKEGRIFTGCNVENVGFT--STICAERTAICKAI 66
Query: 88 LNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+AV++ PCG CRQ L E + + + + E L L
Sbjct: 67 SEGYRDFVEIAVTSDLEDEIVTPCGVCRQTLSEFGSNIKVYCSKSDLGFEE---FTLKEL 123
Query: 141 LPDRFGPNDL 150
LP F N L
Sbjct: 124 LPRAFENNHL 133
>gi|448314341|ref|ZP_21504039.1| cytidine deaminase [Natronolimnobius innermongolicus JCM 12255]
gi|445595168|gb|ELY49280.1| cytidine deaminase [Natronolimnobius innermongolicus JCM 12255]
Length = 130
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ Q+ A P S++ VGA + G +F+G N+E S+HAE+ I + N
Sbjct: 9 RKIQSSAHVPYSEYPVGAALETADGEVFVGCNLE--NANFSNSLHAEEVAIAEAVKNGHR 66
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
LAVS+ PCG CRQ L E + + C + + +Y L LLP+
Sbjct: 67 DFSRLAVSSGRRDGVTPCGMCRQTLAEFCDDDLVVFCDEGEDEDPSEY-TLGELLPN 122
>gi|157822603|ref|NP_001102158.1| cytidine deaminase [Rattus norvegicus]
gi|392348457|ref|XP_003750114.1| PREDICTED: cytidine deaminase-like [Rattus norvegicus]
gi|149024378|gb|EDL80875.1| cytidine deaminase (predicted) [Rattus norvegicus]
Length = 146
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S+F VGA L GRIF G NVE PL + AE+ I
Sbjct: 15 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNVENACYPL--GVCAERTAIQ 72
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+++ +PCG CRQ ++E + + R +
Sbjct: 73 KAISEGYKDFRAIAIASDLQEEFISPCGACRQVMREFGTNWAVYMTKPDGTFVVRT---V 129
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 130 QELLPASFGPEDL 142
>gi|17540514|ref|NP_501221.1| Protein CDD-2 [Caenorhabditis elegans]
gi|351062473|emb|CCD70446.1| Protein CDD-2 [Caenorhabditis elegans]
Length = 166
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG I G NVE +I AE+ I + +
Sbjct: 18 LARAAMKRAHCPYSKFPVGAALLTESGEIVQGCNVE--NASYGGTICAERSAIVSAVSQG 75
Query: 91 EPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + +AV A+PCG CRQFL E D + + + ++N+ LLP
Sbjct: 76 YTKFRAIAVVTELSEPASPCGLCRQFLVEF---GDYKVVVGTASNNKILITSTRALLPFA 132
Query: 145 FGPNDL 150
F P L
Sbjct: 133 FTPESL 138
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
L + A A ++H PYSK P G A++ G I +G +E+A+Y ++ ++A+V+ ++
Sbjct: 14 ELVHLARAAMKRAHCPYSKFPVGAALLTESGEIVQGCNVENASYGGTICAERSAIVSAVS 73
Query: 244 AG 245
G
Sbjct: 74 QG 75
>gi|420151127|ref|ZP_14658272.1| cytidine deaminase [Actinomyces georgiae F0490]
gi|394772503|gb|EJF51710.1| cytidine deaminase [Actinomyces georgiae F0490]
Length = 139
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
Q L L A A P S F VGA GL + GR+ G NVE G ++ AE +++
Sbjct: 6 WQRLSALAVEAMERAYCPYSGFPVGAAGLTADGRLVSGCNVENAGYGC--TLCAECSMVS 63
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L+ RL +A APCG CRQ + E C + + +
Sbjct: 64 ELVRTGGGRLVAVACVNGNKEPVAPCGRCRQVIYEHGGDE----CAVLMPAGAMT---MR 116
Query: 139 HLLPDRFGPNDL 150
+LP FGP+DL
Sbjct: 117 EVLPGAFGPDDL 128
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+RL A+EA +++ PYS P G A + +G + G +E+A Y +L + ++V+ L
Sbjct: 7 QRLSALAVEAMERAYCPYSGFPVGAAGLTADGRLVSGCNVENAGYGCTL-CAECSMVSEL 65
Query: 243 AAGGSGGGGGGYERIVAAALV 263
G G R+VA A V
Sbjct: 66 VRTGGG-------RLVAVACV 79
>gi|375093565|ref|ZP_09739830.1| cytidine deaminase [Saccharomonospora marina XMU15]
gi|374654298|gb|EHR49131.1| cytidine deaminase [Saccharomonospora marina XMU15]
Length = 132
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S VGA L + G + G NVE L S+ AE L+ L RL LA
Sbjct: 22 AYAPYSGLRVGAAALLADGGVVTGCNVENASYGL--SLCAEATLVGQSRLTGGGRLVALA 79
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
AA PCG CRQ + EL N C+ R +S +LP+ FGP DL
Sbjct: 80 CRAATGELLMPCGRCRQLVFELGG----NTCLVDTPLGARA---MSEVLPEAFGPADL 130
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
ERL+ A+ A++++APYS G A + +G + G +E+A+Y SL
Sbjct: 9 ERLRAEAVRVADRAYAPYSGLRVGAAALLADGGVVTGCNVENASYGLSL 57
>gi|345004835|ref|YP_004807688.1| cytidine deaminase [halophilic archaeon DL31]
gi|344320461|gb|AEN05315.1| cytidine deaminase [halophilic archaeon DL31]
Length = 150
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+SA A P S++ VGA L + G +F G N+E S+HAE+ + +
Sbjct: 17 RSALETAYVPYSEYRVGAAVLTAEGEVFSGCNIE--NANYSNSLHAEEVAVGGAVRAGHR 74
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
L +AV++A PCG CRQ L E + C E H L L+PD
Sbjct: 75 ELVAVAVTSAARDAVTPCGMCRQTLAEFGDEEIPVFC--DEGDGEWTEHRLGTLIPDTIT 132
Query: 147 PNDL 150
P L
Sbjct: 133 PEML 136
>gi|257052462|ref|YP_003130295.1| cytidine deaminase [Halorhabdus utahensis DSM 12940]
gi|256691225|gb|ACV11562.1| cytidine deaminase [Halorhabdus utahensis DSM 12940]
Length = 133
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S++ VGA ++G ++ G NVE + S+HAE+ +T + E + +A
Sbjct: 17 AYVPYSEYPVGAALETTAGEVYRGFNVEV--VNYSNSLHAEEVALTGALRAGESDFERVA 74
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLD 152
V +A PCG CRQ L E S I + + E ++ L LLP P +L D
Sbjct: 75 VVSAEHDGLTPCGMCRQTLAEFCADS---FEILTEDDGEITHYTLGDLLPAAMKPGNLQD 131
Query: 153 K 153
+
Sbjct: 132 R 132
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AA +A ++ PYS+ P G A+ G +Y+G +E Y+ SL + AL L AG S
Sbjct: 9 AATDALEDAYVPYSEYPVGAALETTAGEVYRGFNVEVVNYSNSLHAEEVALTGALRAGES 68
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEH 274
+ER+ AVV EH
Sbjct: 69 -----DFERV----------AVVSAEH 80
>gi|381204256|ref|ZP_09911327.1| cytidine deaminase [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 141
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M++ + LL + A+ A P S+F VGA L G++ G NVE P Q
Sbjct: 1 MSENDPMMDENLLLDAAREARMKAYAPYSRFLVGAAILDDQGKLHKGCNVENAAYP--QG 58
Query: 76 IHAEQFLITNLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINS 129
AE I +IL +++ +AV PCG CRQ ++E + I I I +
Sbjct: 59 TCAEAGAIAAMILAEGRQIKAIAVVGDSPDPVTPCGGCRQKIREFAEPT-IPILIGDLK- 116
Query: 130 NERKYHPLSHLLPDRFGPNDLLDK 153
R L+ LLP FGP LL++
Sbjct: 117 QLRLRQTLADLLPHSFGPEYLLNE 140
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA EA K++APYS+ G AI+D +G ++KG +E+AAY A+ A + A G
Sbjct: 16 AAREARMKAYAPYSRFLVGAAILDDQGKLHKGCNVENAAYPQGTCAEAGAIAAMILAEG 74
>gi|160937135|ref|ZP_02084498.1| hypothetical protein CLOBOL_02026 [Clostridium bolteae ATCC
BAA-613]
gi|158440036|gb|EDP17784.1| hypothetical protein CLOBOL_02026 [Clostridium bolteae ATCC
BAA-613]
Length = 176
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S FHV A L G+++ G N+E I AE+ + E + + +
Sbjct: 58 PYSHFHVSAALLCRDGKVYTGNNIE--NAAYSPGICAERCAFAKAVSEGEREFEAIVICG 115
Query: 102 A----------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E N I I + ++ E + + L+ LLP+ FGP+ L
Sbjct: 116 GPDGKAGDYCPPCGVCRQVMREFCNPDSFCI-ILAKSAEEYREYTLAQLLPESFGPDHL 173
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
+E L AL+ +S+APYS A++ +G +Y G+ +E+AAY+P + + A
Sbjct: 41 RELLIQTALDGLGRSYAPYSHFHVSAALLCRDGKVYTGNNIENAAYSPGICAERCAFAKA 100
Query: 242 LAAG 245
++ G
Sbjct: 101 VSEG 104
>gi|149183350|ref|ZP_01861788.1| cytidine deaminase [Bacillus sp. SG-1]
gi|148848947|gb|EDL63159.1| cytidine deaminase [Bacillus sp. SG-1]
Length = 132
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T K A+ A P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 6 LITEAKIARDRAYVPYSKFGVGAALLTEDGKVYHGCNIENAAYSMCNC--AERTALFKAY 63
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ + LAV A PCG CRQ + EL D+ + ++++N + ++ +S +L
Sbjct: 64 SEGDKKFTKLAVVADTKRPVPPCGACRQVISEL-CPPDMKVVLSNLNGDIQELT-VSEIL 121
Query: 142 PDRFGPNDL 150
P F P DL
Sbjct: 122 PGAFSPEDL 130
>gi|126328515|ref|XP_001377496.1| PREDICTED: hypothetical protein LOC100027099 [Monodelphis
domestica]
Length = 393
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
++ L L + A+ A P S F VGA L G+IF G N+E PL AE+ I
Sbjct: 262 IEKLILLGQEAKKFAYCPYSNFPVGAALLTLDGKIFSGCNIENASYPL--GTCAERTAIQ 319
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
I + +A+++ APCG CRQ ++E + + + R H
Sbjct: 320 KAISEGYKEFRAIAITSNMKNDFIAPCGACRQVMREFGKHWYVYMTKEDGTYDVRTVH-- 377
Query: 138 SHLLPDRFGPNDL 150
LLP FGP+DL
Sbjct: 378 -ELLPASFGPDDL 389
>gi|156373955|ref|XP_001629575.1| predicted protein [Nematostella vectensis]
gi|156216578|gb|EDO37512.1| predicted protein [Nematostella vectensis]
Length = 148
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI------L 88
A+ + P SKF VG+ L + RIF G NVE + I AE+ + +
Sbjct: 27 AKEFSYSPYSKFRVGSAVLTNDNRIFTGCNVENASYGI--GICAERTALVKAVSEGFRGF 84
Query: 89 NAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPL--SHLLPDRFG 146
A +A PCG CRQF+ E ++ +C S + Y L LLP F
Sbjct: 85 KAIAVCTDVAAYTGPCGACRQFIAEFGLDIEVYMC-----STDHSYQLLLIKDLLPRAFT 139
Query: 147 PNDLLDKD 154
P DL++ +
Sbjct: 140 PMDLVNAE 147
>gi|297666158|ref|XP_002811396.1| PREDICTED: cytidine deaminase [Pongo abelii]
Length = 146
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKHPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYIVMTVQELLPSSFGPEDL 142
>gi|448727832|ref|ZP_21710179.1| cytidine deaminase [Halococcus morrhuae DSM 1307]
gi|445789390|gb|EMA40077.1| cytidine deaminase [Halococcus morrhuae DSM 1307]
Length = 131
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + A A P S++ VGA + G +FLG N+E S+HAE+ + +
Sbjct: 6 LIDRAREATASAHVPYSEYRVGAALETADGTVFLGCNIENANYS--NSLHAEEVALAEAV 63
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
N LAV+++ PCG CRQ L E D + + + + + L LL
Sbjct: 64 KNGHHDFARLAVASSERDGVLPCGMCRQSLSEF---CDDDFRVLCDEEDSKSEYRLGELL 120
Query: 142 PD 143
PD
Sbjct: 121 PD 122
>gi|325068234|ref|ZP_08126907.1| cytidine deaminase [Actinomyces oris K20]
Length = 144
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
Q L L A T A P S+F VGA L GR+ G NVE G + ++ AE L++
Sbjct: 14 WQALHELAVEAMTHAYAPYSRFKVGAAALVDDGRLVSGCNVENAGYGV--TLCAECGLVS 71
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L RL A + APCG CRQ L E + + + S +
Sbjct: 72 ELTRTGGGRLVAFACVDAHGRALAPCGRCRQLLSEHAADGMVLAMPSGMMS-------ID 124
Query: 139 HLLPDRFGPNDL 150
+LPDRF +D+
Sbjct: 125 EVLPDRFCADDV 136
>gi|269120406|ref|YP_003308583.1| cytidine deaminase [Sebaldella termitidis ATCC 33386]
gi|268614284|gb|ACZ08652.1| cytidine deaminase [Sebaldella termitidis ATCC 33386]
Length = 133
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M S +L+L+ V+ ++ A S F VGAV + +GR F G NVE L S
Sbjct: 1 MVNLSEKEILELIDEAVEISKK-AYVNYSHFPVGAVLIDENGRKFKGVNVENASFGL--S 57
Query: 76 IHAEQFLITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINS 129
+ AE+ IT + + +++ L V+ +PCG CRQF+ E +D N I N
Sbjct: 58 LCAERNAITTAVTDGMKKIKTLVVTGDTDKPISPCGACRQFMLEF---ADENTVIILSNY 114
Query: 130 N-ERKYHPLSHLLPDRF 145
N E K + LLP F
Sbjct: 115 NREYKICSMEDLLPYSF 131
>gi|163839087|ref|YP_001623492.1| thymidine phosphorylase [Renibacterium salmoninarum ATCC 33209]
gi|162952563|gb|ABY22078.1| thymidine phosphorylase [Renibacterium salmoninarum ATCC 33209]
Length = 338
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN---- 89
+A A P SKF VGA L GRI +G NVE L ++ AE L+ L ++
Sbjct: 16 AAMRRAYVPYSKFPVGAAALTKDGRIVVGCNVENASYGL--TLCAECTLVGALQMSGGGK 73
Query: 90 --AEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
A R+ PCG CRQ L E R SD+ + S + +LPD FGP
Sbjct: 74 IAAFYRVDGEGKVLMPCGRCRQLLYEHRG-SDMQLMTVS------GIKTMDQVLPDAFGP 126
Query: 148 NDLLDKDVPLLLET 161
+L L+ E+
Sbjct: 127 ENLFRIASELMTES 140
>gi|433609463|ref|YP_007041832.1| Cytidine deaminase [Saccharothrix espanaensis DSM 44229]
gi|407887316|emb|CCH34959.1| Cytidine deaminase [Saccharothrix espanaensis DSM 44229]
Length = 129
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
V++AQ+ A P S VG+ + GR+ LG NVE + + AE + L L
Sbjct: 14 VEAAQS-AYCPYSGLRVGSAAVCDDGRVVLGCNVENASYGV--GLCAECTMAGQLRLTGG 70
Query: 92 PRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
R +A + PCG CRQ L EL C+ S P+S +LPD F
Sbjct: 71 GRFVAVACRSGAGELLMPCGRCRQVLYELGGPD----CLVDTPSG---VLPMSRVLPDAF 123
Query: 146 GPNDL 150
GP DL
Sbjct: 124 GPEDL 128
>gi|15790030|ref|NP_279854.1| cytidine deaminase [Halobacterium sp. NRC-1]
gi|169235754|ref|YP_001688954.1| cytidine deaminase [Halobacterium salinarum R1]
gi|10580458|gb|AAG19334.1| cytidine aminohydrolase [Halobacterium sp. NRC-1]
gi|167726820|emb|CAP13606.1| cytidine deaminase [Halobacterium salinarum R1]
Length = 134
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S++ VGA +SG ++ G N+E S+HAE+ + + + Q LAV++
Sbjct: 20 PYSEYKVGAALDTASGAVYTGCNIENANYS--NSLHAEEVAVGKAVSAGDTDFQRLAVTS 77
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+ PCG CRQ L E +C + ++ + L LLPD ++L
Sbjct: 78 SQRDAVTPCGMCRQTLAEFAADDLTILCDSGDDTAGVVTYTLGELLPDTITASNL 132
>gi|354544492|emb|CCE41216.1| hypothetical protein CPAR2_302050 [Candida parapsilosis]
Length = 148
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L +V ++LA P SKF V + L SG G NVE I AE+ I+ +
Sbjct: 20 LKDMVTETKSLAYCPYSKFRVASCVLTESGDFITGVNVE--NASYGAGICAERSAISRAV 77
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ + +A++A PCG CRQF++E +I + + + +S+ K + L LL
Sbjct: 78 SQGYRKFRVIAIAADTPEPIVPCGICRQFMREF--NENIALFLFNNDSDFIKVY-LKDLL 134
Query: 142 PDRFGPNDL 150
P FGP +L
Sbjct: 135 PLSFGPENL 143
>gi|134109233|ref|XP_776731.1| hypothetical protein CNBC2220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259411|gb|EAL22084.1| hypothetical protein CNBC2220 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 164
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 61/138 (44%), Gaps = 28/138 (20%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P SKF VGA LG+ GR++ G NVE I AE+ + + ++ +A
Sbjct: 27 AYAPYSKFRVGAALLGADGRLYGGCNVE--NASYGAGICAERTAVVKAVSESQQSFLAVA 84
Query: 99 V-------SAAPCGHCRQFLQELRNTSDINICITS--------------INSNERKYHPL 137
V S +PCG CRQFL+E + D I S IN E K + L
Sbjct: 85 VVSDIPSPSCSPCGICRQFLREFVSL-DTPIFYVSGEYPVNASPSFLADINGKEAKKYIL 143
Query: 138 S----HLLPDRFGPNDLL 151
+LP FGP+ LL
Sbjct: 144 QTTMGEILPHSFGPDHLL 161
>gi|451339549|ref|ZP_21910064.1| Cytidine deaminase [Amycolatopsis azurea DSM 43854]
gi|449417755|gb|EMD23393.1| Cytidine deaminase [Amycolatopsis azurea DSM 43854]
Length = 129
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
V++A++ A P S HVG + GRI +G NVE L + AE + L L
Sbjct: 14 VEAAKS-AYAPYSGLHVGVAAVVDDGRIVVGCNVENASYGL--GMCAECTMAGQLRLTGG 70
Query: 92 PRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+L +A + PCG CRQ L E SD C+ S P+S +LPD F
Sbjct: 71 GKLVAVACRSGSGDLLMPCGRCRQILFE-HGGSD---CLVDTPSG---ILPMSSVLPDAF 123
Query: 146 GPNDL 150
GP+DL
Sbjct: 124 GPDDL 128
>gi|448377605|ref|ZP_21560301.1| cytidine deaminase [Halovivax asiaticus JCM 14624]
gi|445655549|gb|ELZ08394.1| cytidine deaminase [Halovivax asiaticus JCM 14624]
Length = 134
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query: 28 LPTLVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L+K+A Q + P S++ VGA + G +F G N+E + S+HAE+ I
Sbjct: 1 MDDLIKAAREVQAASHVPYSEYRVGAALETADGTVFTGCNLE--NVNFSNSLHAEEVAIA 58
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP-- 136
+ N LAVS++ PCG CRQ L E D ++ I ++ P
Sbjct: 59 EAVKNGSHEFARLAVSSSRRDGVTPCGMCRQTLAEF---CDDDLVIACDEGDDESGTPIV 115
Query: 137 ----LSHLLPDRFGPNDL 150
L LLP +DL
Sbjct: 116 TTYTLGELLPAAMSESDL 133
>gi|168187764|ref|ZP_02622399.1| cytidine deaminase [Clostridium botulinum C str. Eklund]
gi|169294408|gb|EDS76541.1| cytidine deaminase [Clostridium botulinum C str. Eklund]
Length = 132
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ T +K ++ A P S F VGA + G+I+ G N+E AE+ I +
Sbjct: 5 ELIKTALKYRES-AYSPYSNFKVGAAVIMDDGKIYGGCNIENASYGATNC--AERTAIFS 61
Query: 86 LILNAEPRLQ------HLAVSAAPCGHCRQFLQELRNTSDINICITSI-NSNERKYHPLS 138
+ +L+ L+ PCG CRQ + E SD N I I N N+ K L
Sbjct: 62 AVAQGNKKLKAIALVGDLSTYTTPCGICRQVISEF---SDENTEIILIKNENDYKVKKLE 118
Query: 139 HLLPDRFGPNDLL 151
L P F DLL
Sbjct: 119 DLFPGAFTKGDLL 131
>gi|118444585|ref|YP_878553.1| cytidine deaminase [Clostridium novyi NT]
gi|118135041|gb|ABK62085.1| cytidine deaminase [Clostridium novyi NT]
Length = 132
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ +K +T A P SKF VGA + G+I+ G N+E + AE+ I +
Sbjct: 5 ELIKEALKYRET-AYSPYSKFKVGAAVIMDDGKIYGGCNIE--NASYGATNCAERTAIFS 61
Query: 86 LILNAEPRLQ------HLAVSAAPCGHCRQFLQELRNTSDINICITSI-NSNERKYHPLS 138
+ +L+ L+ PCG CRQ + E SD N I I N N+ K L
Sbjct: 62 AVAQGNKKLKAIALVGDLSTYTTPCGICRQVISEF---SDENTDIILIKNENDYKIKKLE 118
Query: 139 HLLPDRFGPNDLL 151
P F DLL
Sbjct: 119 DFFPGGFTKEDLL 131
>gi|134300319|ref|YP_001113815.1| cytidine deaminase [Desulfotomaculum reducens MI-1]
gi|134053019|gb|ABO50990.1| cytidine deaminase [Desulfotomaculum reducens MI-1]
Length = 142
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L + K A+ A P SKF VGA L G++F G NVE L + AE+ I +
Sbjct: 8 LIEMAKEAREKAYVPYSKFKVGAALLTQEGKVFTGCNVENASFGL--TCCAERTAIFKAV 65
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
LAV A +PCG CRQ + E D+ + + +++ + K +S LL
Sbjct: 66 SEGNREFVALAVIADVPTLCSPCGACRQVMAEF--AGDMKVHMANLH-GQYKTITVSELL 122
Query: 142 PDRFGPNDL 150
P F D+
Sbjct: 123 PGYFTAEDM 131
>gi|383762274|ref|YP_005441256.1| cytidine deaminase [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382542|dbj|BAL99358.1| cytidine deaminase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 129
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S + VGA L G +FLG NVE P +I AE+ +T + + R
Sbjct: 13 ARRRAYAPYSHYTVGAAVLTEDGEVFLGCNVENAAYP--ATICAERVALTAAVAQGKRRF 70
Query: 95 QHLAV----SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
+AV +PCG CRQ + EL D+ + I + + + LLPD F L
Sbjct: 71 TAIAVVTRNGGSPCGACRQVMIEL--GPDMVVYIAD-ETGAYRTTTVRALLPDGFDHASL 127
Query: 151 L 151
L
Sbjct: 128 L 128
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 180 NPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALV 239
+P E ++ AA+EA +++APYS G A++ +G ++ G +E+AAY ++ + AL
Sbjct: 2 SPTELIE-AAMEARRRAYAPYSHYTVGAAVLTEDGEVFLGCNVENAAYPATICAERVALT 60
Query: 240 AYLAAG 245
A +A G
Sbjct: 61 AAVAQG 66
>gi|255939506|ref|XP_002560522.1| Pc16g01040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585145|emb|CAP92774.1| Pc16g01040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 164
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
L L T A+ A P SKF VGA L +SG G NVE P+ AE+ I
Sbjct: 10 LTTLSTKAIDAKATAYCPYSKFRVGACILTASGEFITGANVENASYPVGTC--AERVTIG 67
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTS 118
I+ + LAV +A+PCG CRQF++E + S
Sbjct: 68 AAIVAGHRDFKALAVATDIKPAASPCGMCRQFIREFTSPS 107
>gi|453052779|gb|EMF00255.1| cytidine deaminase [Streptomyces mobaraensis NBRC 13819 = DSM
40847]
Length = 131
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A + A P S F VGA + GR+ G NVE + ++ AE LI+ L+ +
Sbjct: 15 RDAMSRAYAPYSGFPVGAAAVVDDGRVVTGCNVENAAYGV--ALCAECGLISALVSSGGG 72
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
RL PCG CRQ L E ++ + S PL+ LLPD FG
Sbjct: 73 RLTAFTCCDRNGDVLMPCGRCRQLLWE-HGGPELAVDTAS------GIRPLAELLPDAFG 125
Query: 147 PNDL 150
P DL
Sbjct: 126 PADL 129
>gi|358064198|ref|ZP_09150778.1| hypothetical protein HMPREF9473_02841 [Clostridium hathewayi
WAL-18680]
gi|356697554|gb|EHI59134.1| hypothetical protein HMPREF9473_02841 [Clostridium hathewayi
WAL-18680]
Length = 144
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 30 TLVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL---- 82
TL++ A + + PIS F VGA LG G I+ G N+E GL F
Sbjct: 11 TLIREALRAREYSFSPISGFAVGAALLGEDGTIYRGCNIECAGLTPSNCAERTAFFKAVS 70
Query: 83 -----ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ + P+ + LA PCG CRQ + + + I I +++ + K L
Sbjct: 71 EGCLKFRAIAIVGGPKGKPLADYCPPCGVCRQLMAQFCSLDTFKI-IMAVDETDWKECTL 129
Query: 138 SHLLP---DRFGPN 148
LLP RF PN
Sbjct: 130 GELLPMAFQRFNPN 143
>gi|452992447|emb|CCQ96072.1| cytidine/deoxycytidine deaminase [Clostridium ultunense Esp]
Length = 141
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+A+ A P S F VGA + G+IF G N+E P+ + AE+ ++ + E
Sbjct: 20 AAREKAYVPYSNFPVGAALITKEGKIFTGCNIENAAFPV--TCCAERTVLFKAVSEGERS 77
Query: 94 LQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ LAV A +PCG CRQ L E ++ + + ++ E + ++ LLP FG
Sbjct: 78 FEALAVVADTDRPVSPCGSCRQVLAEF-CPPEMPVYLANLR-GEVEIMDVASLLPGAFGA 135
Query: 148 NDLLDK 153
DL+ +
Sbjct: 136 KDLMKR 141
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
KE L AL A K++ PYS P G A++ EG I+ G +E+AA+
Sbjct: 11 KEELVKKALAAREKAYVPYSNFPVGAALITKEGKIFTGCNIENAAF 56
>gi|347542287|ref|YP_004856923.1| cytidine deaminase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985322|dbj|BAK80997.1| cytidine deaminase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 135
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P SKF VG+ L + +IF G NVE S AE+ I + ++ L
Sbjct: 20 AYVPYSKFPVGSSVLFENSKIFTGCNVE--NASFGASNCAERTAIFKAVSEGYRKIYALC 77
Query: 99 VSAA------PCGHCRQFLQELRNTSDINI-CITSINSNERKYHPLSHLLPDRFGPNDLL 151
V + PCG CRQ L E D+NI I + N E + H LS +LP FG +L+
Sbjct: 78 VVGSLNDFTYPCGICRQVLSEF--VFDMNIPVIIAKNKEEYRVHKLSEILPYDFGVKNLI 135
>gi|408400714|gb|EKJ79791.1| hypothetical protein FPSE_00071 [Fusarium pseudograminearum CS3096]
Length = 165
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS- 100
P S+F VGA L S G++ G NVE P+ AE+ + + + + +AV+
Sbjct: 46 PYSQFRVGATVLSSEGKLTSGANVENASYPVGTC--AERVALGTAVTSGHRGFRAIAVAT 103
Query: 101 -----AAPCGHCRQFLQELRNTSDINICITSINSNER-KYHPLSHLLPDRFGPNDL 150
A+PCG CRQF++E ++ I + NE L +LP FGP+ L
Sbjct: 104 DIAPPASPCGMCRQFIREF---CKLDTPIIMFDKNEDFVVVKLEQILPMSFGPDQL 156
>gi|321458259|gb|EFX69330.1| hypothetical protein DAPPUDRAFT_202914 [Daphnia pulex]
Length = 148
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q + K+ + A P SKF VGA L G I G NVE + +I AE+ I
Sbjct: 17 IQKIINKAKAVREKAYCPYSKFAVGAALLCDDGAIIDGCNVE--NVSYGLTICAERSAIC 74
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ + +A+ A PCG CRQ L E D+ +C +NE +
Sbjct: 75 KAMSEGQKVFNSIAICAEMKDKFVGPCGACRQVLAEFNVNLDVYLCKP---NNEILKTSM 131
Query: 138 SHLLPDRFGPN 148
+ LLP F PN
Sbjct: 132 AKLLPLSFTPN 142
>gi|54022917|ref|YP_117159.1| cytidine deaminase [Nocardia farcinica IFM 10152]
gi|54014425|dbj|BAD55795.1| putative cytidine deaminase [Nocardia farcinica IFM 10152]
Length = 133
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S+F VGA L + G I G NVE + + AE L+ N I RL ++
Sbjct: 20 AYAPYSRFPVGAAALRADGGIVSGCNVE--NVSYGLGLCAETVLVGNFIAGGGGRLLAVS 77
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V+ + PCG CRQ L E + + PL+ LLPD FGP+DL
Sbjct: 78 VTDSRGEILLPCGRCRQVLYEHGGAG-------LLVDHRAGPVPLARLLPDAFGPDDL 128
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+PE + L+ A + ++APYS+ P G A + +G I G +E+ +Y L
Sbjct: 1 MPEID--WNSLRDNAFRVMHNAYAPYSRFPVGAAALRADGGIVSGCNVENVSYGLGL-CA 57
Query: 235 QAALVAYLAAGGSG 248
+ LV AGG G
Sbjct: 58 ETVLVGNFIAGGGG 71
>gi|444306326|ref|ZP_21142094.1| cytidine deaminase [Arthrobacter sp. SJCon]
gi|443481376|gb|ELT44303.1| cytidine deaminase [Arthrobacter sp. SJCon]
Length = 136
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S F VGA L GRI G NVE L ++ AE L+ NL + L+
Sbjct: 23 AYAPYSGFPVGAAALAGDGRIVSGCNVENASFGL--TLCAECVLVGNLQMTGGGLLRAFY 80
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L E R D+ + T R + +LPD FGP L
Sbjct: 81 CVDGSGNILMPCGRCRQLLYEFR-APDMELMTT------RGIKTMDQVLPDAFGPEHL 131
>gi|399061244|ref|ZP_10746010.1| cytidine deaminase, homotetrameric [Novosphingobium sp. AP12]
gi|398036056|gb|EJL29279.1| cytidine deaminase, homotetrameric [Novosphingobium sp. AP12]
Length = 133
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+FHVGA L + G + G NVE L S+ AE + ++ ++ +AV+
Sbjct: 14 PYSRFHVGAALLMADGSVVTGANVENASYGL--SLCAETVAVAKILSGDRLAVEAVAVTG 71
Query: 102 A------------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149
PCG CRQ L E+ + I + LS LLP FGP +
Sbjct: 72 GAPGEPGQGARVTPCGRCRQVLNEIAQVGGTDPVIWCDGAEGVLELRLSKLLPHAFGPAN 131
Query: 150 LL 151
LL
Sbjct: 132 LL 133
>gi|332244906|ref|XP_003271607.1| PREDICTED: cytidine deaminase [Nomascus leucogenys]
Length = 146
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 16 MAQKSGLTVL-----QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGL 70
MAQK L Q L + A+ A P S F VGA L GRIF G N+E
Sbjct: 1 MAQKRPACTLKPECVQQLLLCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 71 PLHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINIC 123
PL I AE+ I + + +A+++ +PCG CRQ ++E + +
Sbjct: 61 PL--GICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM- 117
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDL 150
+ + LLP FGP DL
Sbjct: 118 --TKPDGTYIVMTVQELLPSSFGPEDL 142
>gi|433639124|ref|YP_007284884.1| cytidine deaminase, homotetrameric [Halovivax ruber XH-70]
gi|433290928|gb|AGB16751.1| cytidine deaminase, homotetrameric [Halovivax ruber XH-70]
Length = 134
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 31 LVKSA---QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
LV++A Q+ + P S++ VGA + G +F G N+E + S+HAE+ I +
Sbjct: 4 LVRAAREIQSASHVPYSEYRVGAALETTDGTVFTGCNLE--NVNFSNSLHAEEVAIAEAV 61
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHP----- 136
N LAVS++ PCG CRQ L E D ++ I ++ P
Sbjct: 62 KNGSHEFARLAVSSSRRDGVTPCGMCRQTLAEF---CDDDLVIACDEGDDESGTPIVTTY 118
Query: 137 -LSHLLPDRFGPNDL 150
L LLP +DL
Sbjct: 119 TLGELLPASMSESDL 133
>gi|399574420|ref|ZP_10768179.1| cytidine deaminase [Halogranum salarium B-1]
gi|399240252|gb|EJN61177.1| cytidine deaminase [Halogranum salarium B-1]
Length = 139
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S++ VGA + G +F+G N+E S+HAE+ I + LA
Sbjct: 16 AYVPYSEYRVGAALRATDGTVFVGCNIENANYS--NSLHAEEVAIAEAVKQGYTEFDRLA 73
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
V++A PCG CRQ L E + +C +E + L LLP+
Sbjct: 74 VTSAARDGVTPCGMCRQTLAEFCDEDLTVVC--DEGDDETTEYTLGELLPN 122
>gi|329945941|ref|ZP_08293628.1| putative cytidine deaminase [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328528389|gb|EGF55367.1| putative cytidine deaminase [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 144
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L L A A P S+F VGA L GR+ G NVE G + ++ AE L++
Sbjct: 14 WRALHDLAVEAMAQAYAPYSRFKVGAAALVDDGRLVSGCNVENAGYGV--TLCAECGLVS 71
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L+ RL A + APCG CRQ L E + +D + + +
Sbjct: 72 ELVRTGGGRLVAFACVDAHGRACAPCGRCRQLLSE--HAAD-----GMVLAMPSGRMTID 124
Query: 139 HLLPDRFGPNDL 150
+LPDRF +D+
Sbjct: 125 EVLPDRFTADDV 136
>gi|256389998|ref|YP_003111562.1| cytidine deaminase [Catenulispora acidiphila DSM 44928]
gi|256356224|gb|ACU69721.1| cytidine deaminase [Catenulispora acidiphila DSM 44928]
Length = 137
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T + A A P S F VGA L GRI G NVE L ++ AE L++ L
Sbjct: 10 LRTAAREAMAHAYVPYSTFPVGAAALVDDGRIVSGCNVENASYGL--TLCAECGLVSALH 67
Query: 88 LNAEPRLQHLA------VSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ RL A + PCG CRQ L E T ++ + +E LS LL
Sbjct: 68 ASGGGRLVAFACVDGEGAALMPCGRCRQLLFEFGGT---DLLVDLGPDSEPSATSLSDLL 124
Query: 142 PDRFGPNDL 150
P FGP++L
Sbjct: 125 PRAFGPDNL 133
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
TE L+ AA EA ++ PYS P G A + +G I G +E+A+Y +L +
Sbjct: 3 TEIDWAALRTAAREAMAHAYVPYSTFPVGAAALVDDGRIVSGCNVENASYGLTL-CAECG 61
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
LV+ L A G G R+VA A V+ E A + R LL
Sbjct: 62 LVSALHASGGG-------RLVAFACVDGEGAALMPCGRCRQLL 97
>gi|226443164|ref|NP_001140065.1| Cytidine deaminase [Salmo salar]
gi|221221622|gb|ACM09472.1| Cytidine deaminase [Salmo salar]
gi|223646524|gb|ACN10020.1| Cytidine deaminase [Salmo salar]
gi|223672371|gb|ACN12367.1| Cytidine deaminase [Salmo salar]
Length = 166
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA L R+F G NVE L + AE+ I +
Sbjct: 37 AKEFAYCPYSNFRVGAALLAHDDRVFTGCNVENACNNL--GVCAERNAIAKAVSEGCRSF 94
Query: 95 QHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ +A+++ +PCG CRQF++E + D+ + + E +S LLP FGP
Sbjct: 95 KAIAIASDLHDQFISPCGGCRQFMREFGASWDVYLTKPDGSYKEMN---VSELLPVSFGP 151
Query: 148 NDLLDKDV 155
D+ K V
Sbjct: 152 EDMSMKKV 159
>gi|197303896|ref|ZP_03168930.1| hypothetical protein RUMLAC_02633 [Ruminococcus lactaris ATCC
29176]
gi|197297011|gb|EDY31577.1| cytidine deaminase [Ruminococcus lactaris ATCC 29176]
Length = 143
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + + + A P S F VGA L + G+++ G N+E S AE+
Sbjct: 6 IQRLIRIAEEQMSHAYAPYSHFQVGAALLTAGGKVYAGCNIE--NAAYTPSNCAERTAFF 63
Query: 85 NLILNAEPRLQHLAV----------SAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
+ E + + + APCG CRQ + E I I +++ K
Sbjct: 64 KAVSEGERKFSAICIVGGMNGIAVEYTAPCGVCRQVMMEFCQPETFQI-ILAVDEENYKV 122
Query: 135 HPLSHLLPDRFGPNDLLDKD 154
L L P FGP++L ++D
Sbjct: 123 CSLRELFPFGFGPDNLQERD 142
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPS 230
+RL A E + ++APYS G A++ G +Y G +E+AAY PS
Sbjct: 7 QRLIRIAEEQMSHAYAPYSHFQVGAALLTAGGKVYAGCNIENAAYTPS 54
>gi|239917030|ref|YP_002956588.1| cytidine deaminase [Micrococcus luteus NCTC 2665]
gi|281414508|ref|ZP_06246250.1| cytidine deaminase [Micrococcus luteus NCTC 2665]
gi|239838237|gb|ACS30034.1| cytidine deaminase [Micrococcus luteus NCTC 2665]
Length = 143
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHL---- 97
P S F VGA L GR+ G N+E L ++ AE L+ +L + RL
Sbjct: 32 PYSGFRVGAAALTDDGRLVSGCNIENASYGL--TLCAECALLADLRMGGGGRLAAFVCVD 89
Query: 98 --AVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDV 155
V PCG CRQ L E R + + + ER + +LPD FGP DL D
Sbjct: 90 GEGVLTMPCGRCRQLLYEFRAPGLVLL----TPAGERG---IDAVLPDAFGPADLERADR 142
Query: 156 P 156
P
Sbjct: 143 P 143
>gi|452975096|gb|EME74915.1| cytidine/deoxycytidine deaminase [Bacillus sonorensis L12]
Length = 136
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
+T +L+ +K A+ LA P SKF VGA L G+++ G N+E L AE+
Sbjct: 1 MTKQELIAEALK-ARELAYVPYSKFKVGAALLTEDGKVYKGCNIENAAYSLCNC--AERT 57
Query: 82 LITNLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYH 135
+ + + LAV+A +PCG CRQ + EL + ++ + +T++ + +
Sbjct: 58 ALFKAYSEGDKAFKMLAVAADTPRPVSPCGACRQVIAEL-CSKNMPVILTNLK-GQIEET 115
Query: 136 PLSHLLPDRFGPNDLLDK 153
+ LLP F DL DK
Sbjct: 116 TVQELLPGAFSSEDLHDK 133
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228
K+ L AL+A ++ PYSK G A++ +G +YKG +E+AAY+
Sbjct: 3 KQELIAEALKARELAYVPYSKFKVGAALLTEDGKVYKGCNIENAAYS 49
>gi|332796440|ref|YP_004457940.1| cytidine deaminase [Acidianus hospitalis W1]
gi|332694175|gb|AEE93642.1| cytidine deaminase [Acidianus hospitalis W1]
Length = 131
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 18 QKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIH 77
Q++ L+ +LL + K+A + P S HVGA + G+IF G N+E L SI
Sbjct: 2 QETDLSDEKLLE-IAKNATRNSYAPYSNIHVGAAIVTEDGKIFTGTNIENSSYGL--SIC 58
Query: 78 AEQFLITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNE 131
AE+ + N + N + + +A+ + PCG CRQ L E ++ IT
Sbjct: 59 AERVAVFNAVSNGYRKFKKIAIITSEGKGIMPCGACRQVLAEFSENMEV---ITLDKEGN 115
Query: 132 RKYHPLSHLLPDRF 145
L+ LLP F
Sbjct: 116 VIRFKLNDLLPHAF 129
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+ ET+ E+L A A S+APYS G AI+ +G I+ G+ +E+++Y S+
Sbjct: 1 MQETDLSDEKLLEIAKNATRNSYAPYSNIHVGAAIVTEDGKIFTGTNIENSSYGLSICAE 60
Query: 235 QAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
+ A+ ++ GY + A++ E + A R +L S E
Sbjct: 61 RVAVFNAVS--------NGYRKFKKIAIITSEGKGIMPCGACRQVLAEFSENME 106
>gi|313894943|ref|ZP_07828502.1| cytidine deaminase [Selenomonas sp. oral taxon 137 str. F0430]
gi|312976396|gb|EFR41852.1| cytidine deaminase [Selenomonas sp. oral taxon 137 str. F0430]
Length = 136
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA L SGR++ G NVE P+ I AE+ I + + E LA+ A
Sbjct: 20 PYSRFAVGAALLARSGRVYGGVNVENASYPV--GICAERAAIARAVTDGERDFDALAIVA 77
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKD 154
APCG CRQ + E + + ++ N P + LLP FG L K+
Sbjct: 78 DSPDVCAPCGMCRQVMAEFPIR---RVILANLRGNMHVLSP-AELLPHAFGAAALPAKE 132
>gi|263657|gb|AAB24946.1| cytidine deaminase [Homo sapiens]
Length = 145
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S F VGA L GRIF G N+E PL I AE+ I
Sbjct: 14 VQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPL--GICAERTAIQ 71
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ + +A+++ +PCG CRQ ++E + + + +
Sbjct: 72 KAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM---TKPDGTYIVMTV 128
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 129 QELLPSSFGPEDL 141
>gi|400292662|ref|ZP_10794589.1| putative cytidine deaminase [Actinomyces naeslundii str. Howell
279]
gi|399902247|gb|EJN85075.1| putative cytidine deaminase [Actinomyces naeslundii str. Howell
279]
Length = 149
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
Q L L A T A P S+F VGA L GR+ G NVE G + ++ AE L++
Sbjct: 19 WQNLHDLAVEAMTHAYAPYSRFKVGAAALVDDGRLVSGCNVENAGYGV--TLCAECGLVS 76
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+L+ L A + APCG CRQ L E + +D + + +
Sbjct: 77 DLVRTGGGHLVAFACVDADGRACAPCGRCRQLLSE--HAAD-----GMVLAMPAGMMTID 129
Query: 139 HLLPDRFGPNDL 150
+LPDRF D+
Sbjct: 130 EVLPDRFTAADV 141
>gi|38492430|pdb|1MQ0|A Chain A, Crystal Structure Of Human Cytidine Deaminase
gi|38492431|pdb|1MQ0|B Chain B, Crystal Structure Of Human Cytidine Deaminase
Length = 140
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ A P S F VGA L GRIF G N+E PL I AE+ I
Sbjct: 9 VQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPL--GICAERTAIQ 66
Query: 85 NLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
+ + +A+++ +PCG CRQ ++E + + + +
Sbjct: 67 KAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYM---TKPDGTYIVMTV 123
Query: 138 SHLLPDRFGPNDL 150
LLP FGP DL
Sbjct: 124 QELLPSSFGPEDL 136
>gi|403237534|ref|ZP_10916120.1| cytidine deaminase [Bacillus sp. 10403023]
Length = 134
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ LA P SKF VGA L G+++ G N+E + AE+ + + +
Sbjct: 11 KKARELAYVPYSKFKVGAAILTKDGKVYHGCNIENAAYSVTNC--AERTALFKAVSEGDK 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+AV A PCG CRQ + EL D + ++++ + ++ + LLP F
Sbjct: 69 EFAAIAVVADTERPVPPCGACRQVISELCG-RDTKVYLSNLKGDVQEI-TIDELLPGAFT 126
Query: 147 PNDL 150
P DL
Sbjct: 127 PEDL 130
>gi|395237971|ref|ZP_10415966.1| cytidine deaminase [Turicella otitidis ATCC 51513]
gi|423351748|ref|ZP_17329379.1| cytidine deaminase [Turicella otitidis ATCC 51513]
gi|394486672|emb|CCI84054.1| cytidine deaminase [Turicella otitidis ATCC 51513]
gi|404386236|gb|EJZ81403.1| cytidine deaminase [Turicella otitidis ATCC 51513]
Length = 141
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 16/119 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE----PRLQHL 97
P S F VGA L SG + LG NVE ++I AE+ +T L+ + E P L+ +
Sbjct: 26 PYSSFSVGAAALAPSGAVTLGCNVE--NAAYGETICAERNAVTTLVADREPGEAPALEAV 83
Query: 98 AV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
AV PCG CRQ L+E + E P +LP FGP L
Sbjct: 84 AVVGLKANPCWPCGACRQVLREF----GCRRVVVEGPDGEALSVPFEEILPHSFGPEAL 138
>gi|307150537|ref|YP_003885921.1| cytidine deaminase [Cyanothece sp. PCC 7822]
gi|306980765|gb|ADN12646.1| cytidine deaminase [Cyanothece sp. PCC 7822]
Length = 134
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
++A LA P SKF VGA LG+ G I+ G NVE L S+ AE+ + I E
Sbjct: 16 ENAAQLAYAPYSKFRVGAAILGNKG-IYQGTNVENASYGL--SLCAERAAFAHAIAQGER 72
Query: 93 RLQHLAVSA------------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ +AV+ PCG CRQ++ EL ++I IC + + L L
Sbjct: 73 EFRAIAVACIDAKEPNNIQLMMPCGACRQWIAELAPNAEIIICAAN------QSFCLEEL 126
Query: 141 LPDRF 145
LP+ F
Sbjct: 127 LPNSF 131
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 180 NPKER--LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
+P+ER L AA AA ++APYSK G AI+ +G IY+G+ +E+A+Y SL +AA
Sbjct: 4 SPQERKQLCQAAENAAQLAYAPYSKFRVGAAILGNKG-IYQGTNVENASYGLSLCAERAA 62
Query: 238 LVAYLAAG 245
+A G
Sbjct: 63 FAHAIAQG 70
>gi|125973583|ref|YP_001037493.1| cytidine deaminase [Clostridium thermocellum ATCC 27405]
gi|256003402|ref|ZP_05428393.1| cytidine deaminase [Clostridium thermocellum DSM 2360]
gi|281417788|ref|ZP_06248808.1| cytidine deaminase [Clostridium thermocellum JW20]
gi|385778495|ref|YP_005687660.1| cytidine deaminase [Clostridium thermocellum DSM 1313]
gi|419723678|ref|ZP_14250793.1| cytidine deaminase [Clostridium thermocellum AD2]
gi|419724497|ref|ZP_14251559.1| cytidine deaminase [Clostridium thermocellum YS]
gi|125713808|gb|ABN52300.1| cytidine deaminase [Clostridium thermocellum ATCC 27405]
gi|255992692|gb|EEU02783.1| cytidine deaminase [Clostridium thermocellum DSM 2360]
gi|281409190|gb|EFB39448.1| cytidine deaminase [Clostridium thermocellum JW20]
gi|316940175|gb|ADU74209.1| cytidine deaminase [Clostridium thermocellum DSM 1313]
gi|380772044|gb|EIC05902.1| cytidine deaminase [Clostridium thermocellum YS]
gi|380780360|gb|EIC10043.1| cytidine deaminase [Clostridium thermocellum AD2]
Length = 128
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA L SG++F G N+E ++ AE+ + + E + +A+S+
Sbjct: 20 PYSKFRVGAAVLAKSGKVFTGVNIE--NASFGATVCAERTAVFKAVSEGEREIAAVAISS 77
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
PCG CRQ L+E + IC + E L LLP+ F
Sbjct: 78 DSDEYTFPCGICRQVLREFGDDDTKVIC--GNKNGEFTVFRLGELLPNAF 125
>gi|359772408|ref|ZP_09275836.1| cytidine deaminase [Gordonia effusa NBRC 100432]
gi|359310411|dbj|GAB18614.1| cytidine deaminase [Gordonia effusa NBRC 100432]
Length = 134
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S F VGA L GR+ G NVE L + AE L NL + RL ++
Sbjct: 21 AYAPYSAFPVGAAALVDDGRLVHGCNVENVSYGL--GVCAEVTLAGNLAVTGGGRLVAVS 78
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V + PCG CRQ L E +++ + S + R L LLPD FGP+DL
Sbjct: 79 VCDSRGELLMPCGRCRQVLLE---HGGVDLLVASPSGPRR----LGDLLPDAFGPDDL 129
>gi|448591308|ref|ZP_21650909.1| cytidine deaminase [Haloferax elongans ATCC BAA-1513]
gi|445733567|gb|ELZ85134.1| cytidine deaminase [Haloferax elongans ATCC BAA-1513]
Length = 140
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P S++ VGA + G +F+G N+E S+HAE+ I + N
Sbjct: 10 RDALDNAYTPYSEYTVGAALRTADGTVFVGCNIENANYS--NSLHAEEVAIAEAVKNGHT 67
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ V++ PCG CRQ L E + D+ I + + E + L LLP+
Sbjct: 68 EFDRIVVTSGARDGVTPCGMCRQTLAEFAD-EDLEI-VCDLGGEETAEYTLGELLPNTIS 125
Query: 147 PNDL 150
+ L
Sbjct: 126 LDTL 129
>gi|448361934|ref|ZP_21550547.1| cytidine deaminase [Natrialba asiatica DSM 12278]
gi|445649614|gb|ELZ02551.1| cytidine deaminase [Natrialba asiatica DSM 12278]
Length = 157
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S++ VGA ++G +F+G N+E S+HAE+ I + N HLAVS+
Sbjct: 32 PYSEYRVGAALETAAGEVFVGCNLENANFS--NSLHAEEVAIAEAVKNGHREFSHLAVSS 89
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNE 131
PCG CRQ L E + + C S+E
Sbjct: 90 DRQDGVTPCGMCRQTLAEFCDDELVVWCDEGDGSDE 125
>gi|289705962|ref|ZP_06502336.1| cytidine deaminase [Micrococcus luteus SK58]
gi|289557299|gb|EFD50616.1| cytidine deaminase [Micrococcus luteus SK58]
Length = 143
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHL---- 97
P S F VGA L GR+ G N+E L ++ AE L+ +L + RL
Sbjct: 32 PYSGFRVGAAALTDDGRLVSGCNIENASYGL--TLCAECALLADLRMGGGGRLAAFVCVD 89
Query: 98 --AVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDV 155
V PCG CRQ L E R + + + ER + +LPD FGP DL D
Sbjct: 90 GDGVLTMPCGRCRQLLYEFRAPGLVLL----TPAGERG---IDAVLPDAFGPADLERADR 142
Query: 156 P 156
P
Sbjct: 143 P 143
>gi|118372387|ref|XP_001019390.1| cytidine deaminase family protein [Tetrahymena thermophila]
gi|89301157|gb|EAR99145.1| cytidine deaminase family protein [Tetrahymena thermophila SB210]
Length = 155
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 25 LQLLPTLVKSAQTLARP---PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
++ + + +K AQ + + P SKFHVG + G++ G NVE L +I AE+
Sbjct: 19 IEEIESYIKLAQEVKKKAYCPYSKFHVGCILFDQDGKMHEGVNVENASYGL--TICAERN 76
Query: 82 LITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYH 135
I + + + + ++ +PCG CRQ + E N I + S ++ +
Sbjct: 77 AIISAVTKGMKSISLIVINCKTEKVGSPCGACRQVIGEFSNEK--TIVVLSNDNGLYEIT 134
Query: 136 PLSHLLPDRFGPNDLL 151
+LP FGP DL
Sbjct: 135 DFESILPGAFGPKDLF 150
>gi|47227442|emb|CAG04590.1| unnamed protein product [Tetraodon nigroviridis]
Length = 130
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L + A+ LA P S F VGA L + G I G NVE L ++ AE+ +
Sbjct: 1 VQELVSKCLKARDLAYCPYSHFPVGAALLTADGAIVTGCNVENASFGL--TVCAERVAVQ 58
Query: 85 NLILNAEPRLQHLAVS-------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPL 137
++ R +AV+ PCG CRQ L E SD + +T + + R+ L
Sbjct: 59 RAVVEGHRRFTAIAVTCDIEDSFVGPCGACRQVLMEF--GSDWTVYLTKPDGSYRR-TSL 115
Query: 138 SHLLPDRFGPNDL 150
LLP F P L
Sbjct: 116 RELLPLAFTPEHL 128
>gi|220911985|ref|YP_002487294.1| cytidine deaminase [Arthrobacter chlorophenolicus A6]
gi|219858863|gb|ACL39205.1| cytidine deaminase [Arthrobacter chlorophenolicus A6]
Length = 133
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
A A P SKF VGA L +GRI G NVE L ++ AE L+ NL +
Sbjct: 16 DAMRKAYAPYSKFPVGAAALTGNGRIVSGCNVENASYGL--TLCAECALVGNLQMTGGGS 73
Query: 94 LQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
L+ PCG CRQ L E R D+ + T + + +LPD FGP
Sbjct: 74 LRAFYCVDGNGNVLMPCGRCRQLLYEFR-APDMELMTT------QGIKTMDQVLPDAFGP 126
Query: 148 NDL 150
L
Sbjct: 127 EHL 129
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L+ AA++A K++APYSK P G A + G I G +E+A+Y +L + ALV L
Sbjct: 10 LEAAAVDAMRKAYAPYSKFPVGAAALTGNGRIVSGCNVENASYGLTL-CAECALVGNLQM 68
Query: 245 GGSG 248
G G
Sbjct: 69 TGGG 72
>gi|448576121|ref|ZP_21642164.1| cytidine deaminase [Haloferax larsenii JCM 13917]
gi|445729801|gb|ELZ81395.1| cytidine deaminase [Haloferax larsenii JCM 13917]
Length = 140
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P S++ VGA + G +F+G N+E S+HAE+ I + N
Sbjct: 10 RDALDNAYTPYSEYTVGAALRTADGTVFVGCNIENANYS--NSLHAEEVAIAEAVKNGHT 67
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ V++ PCG CRQ L E + D+ I + + E + L LLP+
Sbjct: 68 EFDRIVVTSGARDGVTPCGMCRQTLAEFAD-EDLEI-VCDLGGEETAEYTLGELLPNTIS 125
Query: 147 PNDL 150
+ L
Sbjct: 126 LDTL 129
>gi|289577677|ref|YP_003476304.1| cytidine deaminase [Thermoanaerobacter italicus Ab9]
gi|297543984|ref|YP_003676286.1| cytidine deaminase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|289527390|gb|ADD01742.1| cytidine deaminase [Thermoanaerobacter italicus Ab9]
gi|296841759|gb|ADH60275.1| cytidine deaminase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 135
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K A+ A P S F VGA L G+ + G N+E L AE+ + +
Sbjct: 9 LIELAKEAREKAYVPYSHFKVGACVLTEDGKTYQGCNIENASYGLTNC--AERTALFSAY 66
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
N E +L+ +AV A +PCG CRQ + EL D+ + ++++ + + LL
Sbjct: 67 ANGERKLKAIAVVADTEGPVSPCGACRQVMMEL-GGEDMVVVLSNMKGD-YAVVTVKDLL 124
Query: 142 PDRFGPNDL 150
P F DL
Sbjct: 125 PGAFTSKDL 133
>gi|221090371|ref|XP_002167076.1| PREDICTED: probable cytidine deaminase-like [Hydra magnipapillata]
Length = 142
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83
V LL + +K+ + + P SKF VGA + G+ F G NVE L +I AE+
Sbjct: 10 VSNLLDSCIKAKEN-SYSPYSKFRVGAALYTTCGKTFTGCNVENVSYGL--AICAERTAY 66
Query: 84 TNLILNAEPRLQHLAVSAA-------PCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + AVS PCG CRQF+ E D+ + +T+ + N
Sbjct: 67 VKAVSEGYTSFKACAVSTDVKDSFTYPCGACRQFMSEF---GDVEVFLTNDDKN-HTITT 122
Query: 137 LSHLLPDRFGPNDL 150
L LLP +F +L
Sbjct: 123 LKKLLPFQFSAEEL 136
>gi|403526265|ref|YP_006661152.1| cytidine deaminase Cdd [Arthrobacter sp. Rue61a]
gi|403228692|gb|AFR28114.1| cytidine deaminase Cdd [Arthrobacter sp. Rue61a]
Length = 134
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+L K A A P SKF VGA L GRI G NVE L ++ AE L+
Sbjct: 8 WHVLEDAAKQAMQRAYAPYSKFPVGAAALTEDGRIVSGCNVENASYGL--TLCAECALVG 65
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L + R+ PCG CRQ L E R + I + +
Sbjct: 66 QLHMTGGGRIAAFYCVDGQGNILMPCGRCRQLLYEFRAPGMQLMTTQGIKT-------MD 118
Query: 139 HLLPDRFGPNDL 150
+LPD FGP +L
Sbjct: 119 QVLPDAFGPENL 130
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+P + L+ AA +A +++APYSK P G A + +G I G +E+A+Y +L
Sbjct: 1 MPANDIDWHVLEDAAKQAMQRAYAPYSKFPVGAAALTEDGRIVSGCNVENASYGLTL-CA 59
Query: 235 QAALVAYLAAGGSG 248
+ ALV L G G
Sbjct: 60 ECALVGQLHMTGGG 73
>gi|116669702|ref|YP_830635.1| cytidine deaminase [Arthrobacter sp. FB24]
gi|116609811|gb|ABK02535.1| cytidine deaminase [Arthrobacter sp. FB24]
Length = 145
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHL- 97
A P SKF VGA L + GR+ G NVE L ++ AE L+ NL + L+
Sbjct: 33 AYAPYSKFAVGAAALTADGRMVSGCNVENASYGL--TLCAECTLVGNLHMTGGGLLRAFY 90
Query: 98 AVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V AA PCG CRQ L E R D+ + + + +LPD FGP L
Sbjct: 91 CVDAAGNILMPCGRCRQLLYEFR-APDMEL------MTAQGIKTMDQVLPDAFGPQHL 141
>gi|103486255|ref|YP_615816.1| cytidine deaminase [Sphingopyxis alaskensis RB2256]
gi|98976332|gb|ABF52483.1| cytidine deaminase [Sphingopyxis alaskensis RB2256]
Length = 151
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFP--GLPLHQSIH-----AEQFLITNL----ILNA 90
P S FHVGA L +G + G NVE GL L A + I L I+
Sbjct: 24 PYSGFHVGAALLLKNGDVVTGANVENASYGLTLCAETAAVAKIANEGWIGELAEVAIVGG 83
Query: 91 EPRLQHLAVS--AAPCGHCRQFLQEL--RNTSDINICITSINSNERKYHPLSHLLPDRFG 146
P + L S PCG CRQ L E R+ +DI + S + + + LS LLP FG
Sbjct: 84 RPDGEALTGSDPVHPCGRCRQILNEAAERSQTDILVHCASGDDSAVATYKLSELLPAAFG 143
Query: 147 PNDL 150
P DL
Sbjct: 144 PKDL 147
>gi|313245331|emb|CBY40093.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 12 EAESMAQKSGLTVLQLLPTLVKSA-QTLARP--PISKFHVGAVGLGSSGRIFLGGNVEFP 68
EAE Q+ + + +L +V A Q L + SKFHVGA L + G+ F G NVE
Sbjct: 110 EAEVRDQQGEVISMAVLQDMVSRAKQNLEKAYCTYSKFHVGANLLTTKGQ-FDGVNVENA 168
Query: 69 GLPLHQSIHAEQFLITNLI-LNAEPRLQHLAVS--------AAPCGHCRQFLQELRNTSD 119
L +I AE+ + + I + + + +A++ AAPCG CRQFL E D
Sbjct: 169 SYGL--TICAERSAMCSAISQHGKHEFRAIAIATTSPHDTWAAPCGACRQFLVEF---GD 223
Query: 120 INICITSINSNER-KYHPLSHLLPDRFGPNDL 150
+ +T+ N NE+ K LLPD F P+D+
Sbjct: 224 FPVILTN-NKNEKVKIIKTKELLPDCFCPDDM 254
>gi|377574355|ref|ZP_09803385.1| cytidine deaminase [Mobilicoccus pelagius NBRC 104925]
gi|377536911|dbj|GAB48550.1| cytidine deaminase [Mobilicoccus pelagius NBRC 104925]
Length = 146
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
QLL L + A T A P S F VGA L +SG + G NVE L +I AE+ T
Sbjct: 12 QLL-ELAREAATKAYIPYSTFPVGAALLTASGEVVQGCNVENASYGL--TICAERTATTR 68
Query: 86 LILNAE-------PRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNER 132
+I++++ R+ +A+ PCG CRQ L E S I + R
Sbjct: 69 MIVSSDGPDDADARRIVKVAIVGLKASPCFPCGACRQVLHEFGCQS----VIVEEDGAPR 124
Query: 133 KYHPLSHLLPDRFGPNDL 150
Y P + +LP FGP DL
Sbjct: 125 AY-PFAEILPHGFGPADL 141
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 174 QIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
Q+P+ +L A EAA K++ PYS P G A++ G + +G +E+A+Y ++
Sbjct: 6 QVPD----DAQLLELAREAATKAYIPYSTFPVGAALLTASGEVVQGCNVENASYGLTICA 61
Query: 234 VQAALVAYLAAGGSGGGGGGYERIVAAALV 263
+ A + + G RIV A+V
Sbjct: 62 ERTATTRMIVS-SDGPDDADARRIVKVAIV 90
>gi|354613980|ref|ZP_09031873.1| CMP/dCMP deaminase zinc-binding [Saccharomonospora paurometabolica
YIM 90007]
gi|353221654|gb|EHB85999.1| CMP/dCMP deaminase zinc-binding [Saccharomonospora paurometabolica
YIM 90007]
Length = 165
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S VG+ L GR+ G NVE L + AE ++ L L R +A +
Sbjct: 58 PYSGLAVGSAALTDDGRVVTGCNVENASYGL--GLCAEVTMVGQLRLTGGGRFVAVACRS 115
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L E+ S C+ R P+S +LPD FG DL
Sbjct: 116 GAGALLMPCGRCRQLLVEMGGGS----CLV---DTPRGVLPMSTVLPDAFGAGDL 163
>gi|349701367|ref|ZP_08902996.1| cytidine deaminase [Gluconacetobacter europaeus LMG 18494]
Length = 132
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+F VGA + GRIF G NVE P + AE I ++ ++ + V
Sbjct: 20 PYSRFPVGAAVETADGRIFAGCNVENAAYP--EGTCAEAGAIAAMVARGGRQIHRVVVCG 77
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ ++E + + + S L+ LLPD FGP+ L
Sbjct: 78 GTDAPCTPCGGCRQKIREF-AAPETPVSMVSAGGTVLLVRTLADLLPDSFGPDSL 131
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244
L AA++ +++APYS+ P G A+ +G I+ G +E+AAY A+ A +A
Sbjct: 6 LVQAAIDVRLRAYAPYSRFPVGAAVETADGRIFAGCNVENAAYPEGTCAEAGAIAAMVAR 65
Query: 245 GG 246
GG
Sbjct: 66 GG 67
>gi|407774662|ref|ZP_11121959.1| cytidine deaminase [Thalassospira profundimaris WP0211]
gi|407282144|gb|EKF07703.1| cytidine deaminase [Thalassospira profundimaris WP0211]
Length = 137
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
+A+ A P S F VGA + G++ G NVE P + + AE I+ ++L+ E R
Sbjct: 17 AARDKAYAPYSNFFVGAALRTTEGKVISGCNVENAAYP--EGVCAEAGAISAMVLSGETR 74
Query: 94 LQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS--HLLPDRF 145
+ V + PCG CRQ ++E D I I IN LS L+P F
Sbjct: 75 FDEIVVVGLGDIACTPCGGCRQKIREFTG-PDATIFI--INDAGETLLTLSREELIPHSF 131
Query: 146 GPNDL 150
GP +L
Sbjct: 132 GPENL 136
>gi|404214311|ref|YP_006668506.1| Cytidine deaminase [Gordonia sp. KTR9]
gi|403645110|gb|AFR48350.1| Cytidine deaminase [Gordonia sp. KTR9]
Length = 134
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
KS A P S++ VGA G+ + GR+ G NVE L I AE L+ L+ +
Sbjct: 15 KSMIERAYAPYSQYPVGAAGITAEGRVIAGCNVENVSYGL--GICAEVALVAALVNGGDR 72
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
L+ ++V + PCG CRQ L E + + + L+ LLPD FG
Sbjct: 73 ALRAVSVCDSRGAVLMPCGRCRQVLLEHGGRG-------LLVDHPQGPRTLADLLPDAFG 125
Query: 147 PNDL 150
P+DL
Sbjct: 126 PDDL 129
>gi|348571239|ref|XP_003471403.1| PREDICTED: cytidine deaminase-like [Cavia porcellus]
Length = 145
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P S F VGA L +G IF G NVE PL AE+ I I
Sbjct: 23 QEAKKSAYCPYSHFPVGAALLTGNGLIFSGCNVENACYPL--GTCAERTAIQKAISEGHK 80
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ +A+S+ +PCG CRQ ++E +D + +T + L LLP F
Sbjct: 81 DFRAIAISSDLQDDFISPCGACRQVMREF--GTDWAVYMTKADGT-YVVRTLQELLPASF 137
Query: 146 GPNDL 150
GP DL
Sbjct: 138 GPEDL 142
>gi|227823957|ref|YP_002827930.1| cytidine deaminase [Sinorhizobium fredii NGR234]
gi|227342959|gb|ACP27177.1| cytidine deaminase [Sinorhizobium fredii NGR234]
Length = 139
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA G+I+ G N+E P + AE I+++++ +
Sbjct: 19 REAMAKAHAPYSKFPVGAAIRAEDGKIYTGANIENLSFP--EGWCAETTAISHMVMAGQR 76
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ L E S I +C + +K LS LLP F
Sbjct: 77 KIMEVAVIAEKLALCPPCGGCRQRLAEFSGASTRIYLC---DETGIKKSLALSDLLPHSF 133
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
PK+ L AA EA K+HAPYSK P G AI +G IY G+ +E+ ++
Sbjct: 10 PKDELFVAAREAMAKAHAPYSKFPVGAAIRAEDGKIYTGANIENLSF 56
>gi|409081151|gb|EKM81510.1| hypothetical protein AGABI1DRAFT_69771 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 159
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++RL AA EA N +++PYSK P G A+M +G+I KG+ +E+A+Y ++ + ALV
Sbjct: 13 RKRLIEAAFEAKNGTYSPYSKFPVGAALMAADGSIIKGANIENASYGATICAERTALVKA 72
Query: 242 LAAG 245
++ G
Sbjct: 73 ISEG 76
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA + + G I G N+E +I AE+ + I LAV++
Sbjct: 30 PYSKFPVGAALMAADGSIIKGANIE--NASYGATICAERTALVKAISEGVRSFVALAVTS 87
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHP-----------LSHLLPDR 144
+PCG CRQF++E + + + K P L LLP
Sbjct: 88 NVKSAISPCGICRQFIREFCSLDMPILLVPGDYPQAGKLEPGYSEGGVRDTTLGELLPMS 147
Query: 145 FGPNDL 150
FGP DL
Sbjct: 148 FGPEDL 153
>gi|119964185|ref|YP_947041.1| cytidine deaminase [Arthrobacter aurescens TC1]
gi|119951044|gb|ABM09955.1| cytidine deaminase [Arthrobacter aurescens TC1]
Length = 136
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+L K A A P SKF VGA L GRI G NVE L ++ AE L+
Sbjct: 10 WHVLEDAAKQAMQRAYAPYSKFPVGAAALTEDGRIVSGCNVENASYGL--TLCAECALVG 67
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L + R+ PCG CRQ L E R + I + +
Sbjct: 68 QLHMTGGGRIAAFYCVDGQGNILMPCGRCRQLLYEFRAPGMQLMTTQGIKT-------MD 120
Query: 139 HLLPDRFGPNDL 150
+LPD FGP +L
Sbjct: 121 QVLPDAFGPENL 132
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPV 234
+P + L+ AA +A +++APYSK P G A + +G I G +E+A+Y +L
Sbjct: 3 MPANDIDWHVLEDAAKQAMQRAYAPYSKFPVGAAALTEDGRIVSGCNVENASYGLTL-CA 61
Query: 235 QAALVAYLAAGGSG 248
+ ALV L G G
Sbjct: 62 ECALVGQLHMTGGG 75
>gi|205374161|ref|ZP_03226961.1| cytidine deaminase [Bacillus coahuilensis m4-4]
Length = 132
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K+A+ A P SKF VGA G++G+++ G N+E + AE+ +
Sbjct: 11 KAAREKAYVPYSKFKVGAALFGTNGQVYHGCNIENAAYSMCNC--AERTALFKAYSEGVK 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+ V A PCG CRQ + EL + D+ + +T++N + ++ + LLP F
Sbjct: 69 DFTTMVVVADTKRPVPPCGACRQVISEL-CSKDMKMVLTNLNGDIQEL-TVEQLLPGAFS 126
Query: 147 PNDL 150
P DL
Sbjct: 127 PEDL 130
>gi|308491416|ref|XP_003107899.1| CRE-CDD-2 protein [Caenorhabditis remanei]
gi|308249846|gb|EFO93798.1| CRE-CDD-2 protein [Caenorhabditis remanei]
Length = 164
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG LG NVE +I AE+ I + +
Sbjct: 18 LARNAMKRAHCPYSKFPVGAALLTESGETILGCNVE--NASYGGTICAERSAIVSAVSQG 75
Query: 91 EPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + +AV A+PCG CRQFL E D + + + ++++ LLP
Sbjct: 76 HNKFRAIAVVTGLSEPASPCGLCRQFLVEF---GDFKVVVGTASNSKILTTSTRDLLPYA 132
Query: 145 FGPNDL 150
F P L
Sbjct: 133 FTPESL 138
>gi|226184650|dbj|BAH32754.1| probable cytidine deaminase [Rhodococcus erythropolis PR4]
Length = 134
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 31 LVKSAQTLAR---PPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L +AQ + R P S + VGA L GRI G NVE L S+ AE L+ NL
Sbjct: 9 LRHNAQVVMRQAYAPYSGYAVGAAALVDDGRIVSGCNVENVSYGL--SLCAECGLVGNLA 66
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
RL A PCG CRQ L E ++ + +S + PLS LL
Sbjct: 67 ATGGGRLVAFTCCDAKGSILMPCGRCRQLLLE-HGGGEMLVDTSS------GFKPLSELL 119
Query: 142 PDRFGP 147
PD FGP
Sbjct: 120 PDAFGP 125
>gi|322699067|gb|EFY90832.1| cytidine deaminase [Metarhizium acridum CQMa 102]
Length = 179
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 21 GLTVLQL--LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHA 78
GLT Q L +A++ A P S+F VGA LG G + G NVE P+ A
Sbjct: 25 GLTREQFAALREQASAAKSTAYCPYSRFRVGAALLGDDGSVTTGANVENASYPVGTC--A 82
Query: 79 EQFLITNLILNAEPR-LQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNE 131
E+ + + + R + +AV+ A+PCG CRQF++E +++ + + +E
Sbjct: 83 ERVALGKAVTDRGLRAFKAVAVATDVAPPASPCGMCRQFIREF---CRLDMPVIMFDKDE 139
Query: 132 R-KYHPLSHLLPDRFGPNDL-LDKD 154
L LLP FGP L LD D
Sbjct: 140 NFVVLTLEELLPLSFGPEKLALDGD 164
>gi|313888898|ref|ZP_07822558.1| cytidine deaminase [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845071|gb|EFR32472.1| cytidine deaminase [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 137
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ + + + P S F+VG G ++ GGN+E AE+ I
Sbjct: 5 KLIELAIDARDNMTYTPYSHFNVGCAVEMEDGSVYTGGNIEIASYSPTNC--AERTAIFK 62
Query: 86 LILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ + ++ +AV PCG CRQ ++E +I I + ++ + K + +
Sbjct: 63 AVSEGKREIKKIAVVGDSDYTFPCGVCRQVIREFSKNPEI---IVANSTEDYKIFGMEEI 119
Query: 141 LPDRFGPNDL 150
LP FGP DL
Sbjct: 120 LPHSFGPEDL 129
>gi|426196383|gb|EKV46311.1| hypothetical protein AGABI2DRAFT_205453 [Agaricus bisporus var.
bisporus H97]
Length = 159
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
++RL AA EA N +++PYSK P G A+M +G+I KG+ +E+A+Y ++ + ALV
Sbjct: 13 RKRLIEAAFEAKNGTYSPYSKFPVGAALMAADGSIIKGANIENASYGATICAERTALVKA 72
Query: 242 LAAG 245
++ G
Sbjct: 73 ISEG 76
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA + + G I G N+E +I AE+ + I LAV++
Sbjct: 30 PYSKFPVGAALMAADGSIIKGANIE--NASYGATICAERTALVKAISEGVRSFVALAVTS 87
Query: 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHP-----------LSHLLPDR 144
+PCG CRQF++E + + + K P L LLP
Sbjct: 88 NVKSAISPCGICRQFIREFCSLDMPILLVPGDYPQAGKSEPGYSEGGVRDTTLGELLPMS 147
Query: 145 FGPNDL 150
FGP DL
Sbjct: 148 FGPEDL 153
>gi|222479370|ref|YP_002565607.1| cytidine deaminase [Halorubrum lacusprofundi ATCC 49239]
gi|222452272|gb|ACM56537.1| cytidine deaminase [Halorubrum lacusprofundi ATCC 49239]
Length = 133
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P S++ VGA + G ++ G N+E S+HAE+ + + N
Sbjct: 8 RDALDDAHVPYSEYRVGAALRTADGTVYTGCNIENANYS--NSLHAEEVALAEAVKNGHR 65
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+AV++ PCG CRQ L E +D I + E + L LLP+
Sbjct: 66 EFDRIAVTSGVRDGVTPCGMCRQSLTEF--AADDLIVVCDEGDGETSEYTLGELLPNTIS 123
Query: 147 PNDLLD 152
+ L D
Sbjct: 124 EDTLDD 129
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AA +A + +H PYS+ G A+ +G +Y G +E+A Y+ SL + AL + G
Sbjct: 6 AARDALDDAHVPYSEYRVGAALRTADGTVYTGCNIENANYSNSLHAEEVALAEAVKNG 63
>gi|383624758|ref|ZP_09949164.1| cytidine deaminase [Halobiforma lacisalsi AJ5]
gi|448697100|ref|ZP_21698256.1| cytidine deaminase [Halobiforma lacisalsi AJ5]
gi|445782229|gb|EMA33079.1| cytidine deaminase [Halobiforma lacisalsi AJ5]
Length = 143
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ Q+ A P S++ VGA G +F+G N+E S+HAE+ I + N
Sbjct: 22 REIQSQAHVPYSEYAVGAAIETGDGEVFVGCNLENANFS--NSLHAEEVAIAEAVKNGHG 79
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAVS+ PCG CRQ L E + D+ + E + L LLP+
Sbjct: 80 EFTRLAVSSDRRDGVTPCGMCRQTLAEFCD-DDLRVICDEGEGVEPTEYALGELLPNTIS 138
Query: 147 PNDL 150
L
Sbjct: 139 EETL 142
>gi|374340170|ref|YP_005096906.1| cytidine deaminase [Marinitoga piezophila KA3]
gi|372101704|gb|AEX85608.1| cytidine deaminase, homotetrameric [Marinitoga piezophila KA3]
Length = 141
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ LL K A + P S F VGA L G+I+ G N+E L S+ AE+ I
Sbjct: 8 IDLLYQKAKDAMQNSYSPYSNFKVGAALLTKDGKIYTGTNIENASYGL--SMCAERTAIF 65
Query: 85 NLILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
+ E + L V +PCG CRQ + E NI +T++ + K +
Sbjct: 66 KAVSEGEKNFEALVVIGETDEPISPCGACRQVIAEFGVE---NIILTNL-KKDLKIMTVE 121
Query: 139 HLLPDRFGPNDLLDKD 154
LLP F DL D++
Sbjct: 122 ELLPYGFSGKDLNDQN 137
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A +A S++PYS G A++ +G IY G+ +E+A+Y S+ + A+ ++ G
Sbjct: 15 AKDAMQNSYSPYSNFKVGAALLTKDGKIYTGTNIENASYGLSMCAERTAIFKAVSEG 71
>gi|398381860|ref|ZP_10539965.1| cytidine deaminase, homotetrameric [Rhizobium sp. AP16]
gi|397718731|gb|EJK79315.1| cytidine deaminase, homotetrameric [Rhizobium sp. AP16]
Length = 130
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA G+I+ G N+E L Q AE I+++I+
Sbjct: 10 RGAMAFAHAPYSKFPVGAAIRAEDGKIYAGANIE--NLSFPQGWCAEPTAISHMIMGGAK 67
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNT-SDINICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ + E + + + +C + RK + LLP F
Sbjct: 68 KIVEMAVIAEKLPLCPPCGGCRQKIAEFASKETRVYLC---DETGVRKTMTMDELLPFSF 124
Query: 146 GPNDL 150
L
Sbjct: 125 ETETL 129
>gi|229489453|ref|ZP_04383316.1| cytidine deaminase [Rhodococcus erythropolis SK121]
gi|229323550|gb|EEN89308.1| cytidine deaminase [Rhodococcus erythropolis SK121]
Length = 134
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 31 LVKSAQTLAR---PPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L +AQ + R P S + VGA L GRI G NVE L S+ AE L+ NL
Sbjct: 9 LRHNAQVVMRQAYAPYSGYAVGAAALVDDGRIVSGCNVENVSYGL--SLCAECGLVGNLA 66
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
RL A PCG CRQ L E ++ + +S + PLS LL
Sbjct: 67 ATGGGRLLAFTCCDAKGSILMPCGRCRQLLLE-HGGGEMLVDTSS------GFKPLSELL 119
Query: 142 PDRFGP 147
PD FGP
Sbjct: 120 PDAFGP 125
>gi|238854659|ref|ZP_04644989.1| cytidine deaminase [Lactobacillus jensenii 269-3]
gi|260664398|ref|ZP_05865250.1| cytidine deaminase [Lactobacillus jensenii SJ-7A-US]
gi|313472198|ref|ZP_07812690.1| cytidine deaminase [Lactobacillus jensenii 1153]
gi|238832449|gb|EEQ24756.1| cytidine deaminase [Lactobacillus jensenii 269-3]
gi|239529578|gb|EEQ68579.1| cytidine deaminase [Lactobacillus jensenii 1153]
gi|260561463|gb|EEX27435.1| cytidine deaminase [Lactobacillus jensenii SJ-7A-US]
Length = 140
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI---LNAEPRLQ 95
A P SKFHV A L SG+I G N+E +I AE+ I N + L +P ++
Sbjct: 19 AYAPYSKFHVSAALLTESGKITTGVNIE--NAAYGSTICAERVAIFNYVNQGLTNDP-IK 75
Query: 96 HLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149
L ++ +PCG CRQ + E +D I +T+ + ++ L+ +LP F D
Sbjct: 76 CLLITGNTSRPISPCGSCRQVMAEFMQ-ADTKIVLTNAKGDYKE-ATLADILPYYFTDGD 133
Query: 150 LLD 152
L+D
Sbjct: 134 LVD 136
>gi|410659182|ref|YP_006911553.1| Cytidine deaminase [Dehalobacter sp. DCA]
gi|410662167|ref|YP_006914538.1| Cytidine deaminase [Dehalobacter sp. CF]
gi|409021537|gb|AFV03568.1| Cytidine deaminase [Dehalobacter sp. DCA]
gi|409024523|gb|AFV06553.1| Cytidine deaminase [Dehalobacter sp. CF]
Length = 139
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S + VGA L SGRI G NVE L ++ AE+ + + I E R++ +A
Sbjct: 26 AYAPYSCYKVGAAVLWESGRITSGVNVENASYGL--TVCAERNAVFHGIGLGERRIKAVA 83
Query: 99 VSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V+ +PCG CRQ ++E + + S E + L+ LLPD FGP L
Sbjct: 84 VTVPREEMPSPCGACRQVIREFATDC---LVLLSNGGGEIRQISLNDLLPDSFGPEFL 138
>gi|375098962|ref|ZP_09745225.1| cytidine deaminase, homotetrameric [Saccharomonospora cyanea
NA-134]
gi|374659694|gb|EHR59572.1| cytidine deaminase, homotetrameric [Saccharomonospora cyanea
NA-134]
Length = 132
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+ VG+ L GRI G NVE + + AE ++ L L+ RL +A +
Sbjct: 25 PYSRLRVGSAALTDDGRIVTGCNVENASYGV--GLCAECTMVGQLRLSGGGRLVAVACRS 82
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L E T C+ + P++ +LP FGP DL
Sbjct: 83 GEGELLMPCGRCRQLLYEFGGTE----CLVDTPAG---VQPMTSVLPQAFGPEDL 130
>gi|410636854|ref|ZP_11347445.1| cytidine deaminase [Glaciecola lipolytica E3]
gi|410143660|dbj|GAC14650.1| cytidine deaminase [Glaciecola lipolytica E3]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L K AQ A P S F VG+ L +G+++ G N+E PL Q AE I
Sbjct: 6 QKLIQAAKLAQQNAYAPYSNFQVGSAILADNGKVYAGCNIENAAYPLGQC--AEAGAIAA 63
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRN 116
+IL+ +++ + +++ PCG CRQ ++E N
Sbjct: 64 MILDGGTKIEKILIASPNEKRCPPCGGCRQKIKEFAN 100
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+N ++L AA A ++APYS G AI+ G +Y G +E+AAY A+
Sbjct: 2 DNSTQKLIQAAKLAQQNAYAPYSNFQVGSAILADNGKVYAGCNIENAAYPLGQCAEAGAI 61
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEK 265
A + GG+ E+I+ A+ EK
Sbjct: 62 AAMILDGGT-----KIEKILIASPNEK 83
>gi|222084454|ref|YP_002542983.1| cytidine deaminase [Agrobacterium radiobacter K84]
gi|221721902|gb|ACM25058.1| cytidine deaminase [Agrobacterium radiobacter K84]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA G+I+ G N+E L Q AE I+++I+
Sbjct: 10 RGAMAFAHAPYSKFPVGAAIRAEDGKIYAGANIE--NLSFPQGWCAEPTAISHMIMGGAK 67
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNT-SDINICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ + E + + + +C + RK + LLP F
Sbjct: 68 KIVEMAVIAEKLPLCPPCGGCRQKIAEFASKETRVYLC---DEAGVRKMMTMDELLPFSF 124
>gi|269128385|ref|YP_003301755.1| cytidine deaminase [Thermomonospora curvata DSM 43183]
gi|268313343|gb|ACY99717.1| cytidine deaminase [Thermomonospora curvata DSM 43183]
Length = 138
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI----- 87
+ A A P S F VGA L GR+ G NVE L + AE L++ L
Sbjct: 14 REAMQRAYAPYSNFPVGAAALTDDGRVITGCNVENASYGL--GLCAECSLVSALYGPDLP 71
Query: 88 -LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ PRL L+V PCG CRQ L E + + R P+S +
Sbjct: 72 AGSRRPRLVALSVVDGNGDPLMPCGRCRQLLWEHGGPH-------LLLATARGIVPMSQV 124
Query: 141 LPDRFGPNDL 150
LPD FGP+DL
Sbjct: 125 LPDAFGPDDL 134
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
TE RL+ AA EA +++APYS P G A + +G + G +E+A+Y
Sbjct: 2 TEIDWARLREAAREAMQRAYAPYSNFPVGAAALTDDGRVITGCNVENASY 51
>gi|448352849|ref|ZP_21541630.1| cytidine deaminase [Natrialba hulunbeirensis JCM 10989]
gi|445642128|gb|ELY95199.1| cytidine deaminase [Natrialba hulunbeirensis JCM 10989]
Length = 138
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ Q+ A P S++ VGA + G +F+G N+E S+HAE+ I + N
Sbjct: 13 RKIQSQAHVPYSEYRVGAALETADGEVFVGCNLENANFS--NSLHAEEVAIAEAVKNGHR 70
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERK---YHPLSHLLPD 143
LAVS+ PCG CRQ L E + + C + + + L LLP+
Sbjct: 71 EFTRLAVSSDRRDGVTPCGMCRQTLAEFCDDDLVVFCDEGEDQDADDGTTVYTLGELLPN 130
Query: 144 RFGPNDL 150
L
Sbjct: 131 TISEETL 137
>gi|448306129|ref|ZP_21496039.1| cytidine deaminase [Natronorubrum bangense JCM 10635]
gi|445598767|gb|ELY52819.1| cytidine deaminase [Natronorubrum bangense JCM 10635]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ Q+ A P S++ VGA +G +F+G N+E S+HAE+ I + N
Sbjct: 9 RDVQSAAHVPYSEYAVGAALETEAGEVFVGCNLENANYS--NSLHAEEVAIAEAVKNGHR 66
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+AVS+ PCG CRQ L E + + IC +Y L LLP+
Sbjct: 67 EFARIAVSSGRRDGVTPCGMCRQTLAEFCDDELLVICDEGDAEPPTEY-TLGELLPNTIS 125
Query: 147 PNDL 150
L
Sbjct: 126 EETL 129
>gi|448410269|ref|ZP_21575134.1| cytidine deaminase [Halosimplex carlsbadense 2-9-1]
gi|445671965|gb|ELZ24544.1| cytidine deaminase [Halosimplex carlsbadense 2-9-1]
Length = 129
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S++ VGA + GR++ G N+E S+HAE+ + + + LAVS+
Sbjct: 18 PYSEYAVGAALRVADGRVYTGCNIENANYS--NSLHAEEVALGTAVRDGHREFDRLAVSS 75
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
A PCG CRQ L E S + +C S + E + L LLP+
Sbjct: 76 AAEDGVTPCGMCRQSLAEFCEESFVVVCEGSDGAVE---YELGELLPE 120
>gi|448238768|ref|YP_007402826.1| cytidine deaminase [Geobacillus sp. GHH01]
gi|445207610|gb|AGE23075.1| cytidine deaminase [Geobacillus sp. GHH01]
Length = 132
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ LA P SKF VGA L G ++ G N+E + AE+ + E
Sbjct: 11 KKARELAYVPYSKFPVGAALLTKGGSVYRGCNIENAAYSVCNC--AERTALFKAYSEGEK 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A PCG CRQ + EL + D+ + + ++ + K +S LLP+ F
Sbjct: 69 EFTALAVIADTPRPVPPCGACRQVIAELCH-GDMKVILANLKGD-VKVMTVSELLPEAFS 126
Query: 147 PNDL 150
DL
Sbjct: 127 AEDL 130
>gi|348508072|ref|XP_003441579.1| PREDICTED: cytidine deaminase-like [Oreochromis niloticus]
Length = 165
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 12 EAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLP 71
E S TV +L+ L A+ P SKF VGA L + G NVE
Sbjct: 14 EDRDFKHVSKETVAKLI-QLSHEAKKQTYCPYSKFRVGAALLTLDNSLLTGCNVENASYN 72
Query: 72 LHQSIHAEQFLITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICI 124
L + AE+ +I + + +A+++ +PCG CRQF++E S+ ++ +
Sbjct: 73 L--GMCAERNVIAKAVSEGHRGFKAIAIASDESDQFISPCGGCRQFMREF--GSNWDVYL 128
Query: 125 TSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLL 158
T + + K + LLP FGP DL K V +
Sbjct: 129 TKPDGSYMKM-TVEELLPVSFGPEDLTKKKVSYI 161
>gi|157364141|ref|YP_001470908.1| cytidine deaminase [Thermotoga lettingae TMO]
gi|157314745|gb|ABV33844.1| cytidine deaminase [Thermotoga lettingae TMO]
Length = 127
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L A A P S F VGAV + SG+IF G NVE L SI AE+ I + I
Sbjct: 6 LIELAIDAMKRAYVPYSNFRVGAVVVSKSGKIFTGCNVENASYGL--SICAERVAIFSTI 63
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
+ E ++ L V A +PCG CRQ + E D + + + N + +S LL
Sbjct: 64 ASGE-EIEKLVVVADTPQPVSPCGACRQVMSEF---GDFEVVLANTNGDIITTK-VSDLL 118
Query: 142 PDRF 145
P F
Sbjct: 119 PHAF 122
>gi|424889138|ref|ZP_18312741.1| cytidine deaminase, homotetrameric [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174687|gb|EJC74731.1| cytidine deaminase, homotetrameric [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 129
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA GR++ G N+E L Q AE I+ +I+
Sbjct: 10 RGAMAFAHAPYSKFPVGAAIRAEDGRVYTGANIE--NLSFPQGWCAEPTAISAMIMGGAR 67
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ + E + D I + + +K + LLP F
Sbjct: 68 KIVEMAVIAEKLPLCPPCGGCRQKISEF-ASKDTKIYLCD-EAGVKKTMTMEELLPFSF 124
>gi|261203331|ref|XP_002628879.1| cytidine deaminase [Ajellomyces dermatitidis SLH14081]
gi|239586664|gb|EEQ69307.1| cytidine deaminase [Ajellomyces dermatitidis SLH14081]
Length = 121
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 16 MAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQS 75
M + T L L + +A+ A P SKF VGA L G +G NVE P+
Sbjct: 1 MFTQLSATELHTLSSKAIAAKEAAHCPYSKFRVGACLLTDEGEFIVGANVENVSYPV--G 58
Query: 76 IHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDIN 121
+ AE+ ++ ++ + +AV+ A+PCG CRQFL R + N
Sbjct: 59 VCAERCALSTAVVAGHKNFKAIAVATDINPGASPCGMCRQFLHVWRGRNVYN 110
>gi|261418493|ref|YP_003252175.1| cytidine deaminase [Geobacillus sp. Y412MC61]
gi|297529345|ref|YP_003670620.1| cytidine deaminase [Geobacillus sp. C56-T3]
gi|319767546|ref|YP_004133047.1| cytidine deaminase [Geobacillus sp. Y412MC52]
gi|261374950|gb|ACX77693.1| cytidine deaminase [Geobacillus sp. Y412MC61]
gi|297252597|gb|ADI26043.1| cytidine deaminase [Geobacillus sp. C56-T3]
gi|317112412|gb|ADU94904.1| cytidine deaminase [Geobacillus sp. Y412MC52]
Length = 132
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ LA P SKF VGA L G ++ G N+E + AE+ + E
Sbjct: 11 KKARELAYVPYSKFPVGAALLTKGGSVYRGCNIENAAYSVCNC--AERTALFKAYSEGEK 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A PCG CRQ + EL + D+ + + ++ + K +S LLP+ F
Sbjct: 69 EFTALAVIADTPRPVPPCGACRQVIAELCH-GDMKVILANLKGD-VKVMTVSELLPEAFS 126
Query: 147 PNDL 150
DL
Sbjct: 127 AEDL 130
>gi|380015738|ref|XP_003691853.1| PREDICTED: cytidine deaminase-like [Apis florea]
Length = 148
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA L G IF G NVE P+ AE+ I + + + + L V A
Sbjct: 33 PYSKFKVGAAILCDDGSIFTGCNVENASYPVGTC--AERTAIVKAVSEGKRKFKVLTVVA 90
Query: 102 --------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
PCG CRQ + E DI I +T + LS+LLP FG
Sbjct: 91 DKKNNIFTTPCGFCRQAIAEF---GDIPIYLTGPDMKNVLKTTLSNLLPHAFG 140
>gi|241955104|ref|XP_002420273.1| cytidine aminohydrolase, putative; cytidine deaminase, putative
[Candida dubliniensis CD36]
gi|223643614|emb|CAX42497.1| cytidine aminohydrolase, putative [Candida dubliniensis CD36]
Length = 147
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
V A++ A P SKF VG L SG G NVE + AE+ I +
Sbjct: 24 VIKAKSTAYCPYSKFRVGCALLTESGEFISGANVE--NASYGAGVCAERTAIVKAVTEGH 81
Query: 92 PRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+ + +AV+ PCG CRQF++E +I + + + + K + L LLP F
Sbjct: 82 TKFKAIAVAGNTKDPITPCGICRQFIREF--APEIPVFMFNEGNGFIKVY-LQDLLPLSF 138
Query: 146 GPNDL 150
GP DL
Sbjct: 139 GPEDL 143
>gi|19115233|ref|NP_594321.1| cytidine deaminase Ccd1 (predicted) [Schizosaccharomyces pombe
972h-]
gi|19862844|sp|Q09190.2|CDD_SCHPO RecName: Full=Putative cytidine deaminase; Short=CDA; AltName:
Full=Cytidine aminohydrolase
gi|6448609|emb|CAB61215.1| cytidine deaminase Ccd1 (predicted) [Schizosaccharomyces pombe]
Length = 133
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL-GGNVEFPGLPLHQSIHAEQFLI 83
++ L VK + + P S F VGA + ++ G NVE I AE+ I
Sbjct: 6 IEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVE--NASYGNCICAERVAI 63
Query: 84 TNLILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
T + + + V +A PCG CRQ ++E + DIN+ + + +
Sbjct: 64 TKAVSMGYTKFMAIGVMSAKGRVTPCGICRQVIREF--SKDINVYMFH-DDGGYDMKTIE 120
Query: 139 HLLPDRFGPNDL 150
LLPD FGP+DL
Sbjct: 121 ELLPDSFGPDDL 132
>gi|159184173|ref|NP_353166.2| cytidine deaminase [Agrobacterium fabrum str. C58]
gi|159139506|gb|AAK85951.2| cytidine deaminase [Agrobacterium fabrum str. C58]
Length = 134
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A A P SKF VGA G+I+ G N+E P Q AE I+ +I+ ++
Sbjct: 17 AMAFAYAPYSKFPVGAAIRAEDGKIYTGANIENISFP--QGWCAEPSAISAMIMGGAKKI 74
Query: 95 QHLAVSA------APCGHCRQFLQELRN-TSDINICITSINSNERKYHPLSHLLPDRF 145
+AV A +PCG CRQ + E + I +C + +K + LLP F
Sbjct: 75 SEVAVIAEKLPLCSPCGGCRQKIAEFATPETKIYLC---DETGVQKVMTMEELLPSVF 129
>gi|341887064|gb|EGT42999.1| hypothetical protein CAEBREN_29459 [Caenorhabditis brenneri]
Length = 166
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG I LG NVE +I AE+ + + +
Sbjct: 17 LARTALKRAHCPYSKFPVGAALLTESGEIILGCNVE--NASYGGTICAERSAVVSAVSQG 74
Query: 91 EPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + ++V A+PCG CRQFL E D + I + + + LLP
Sbjct: 75 HTKFRAISVVTELNEPASPCGLCRQFLVEF---GDFKVIIGTAFNTKILITSTRDLLPFA 131
Query: 145 FGPNDL 150
F P L
Sbjct: 132 FTPESL 137
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
L + A A ++H PYSK P G A++ G I G +E+A+Y ++ ++A+V+ ++
Sbjct: 13 ELVHLARTALKRAHCPYSKFPVGAALLTESGEIILGCNVENASYGGTICAERSAVVSAVS 72
Query: 244 AG 245
G
Sbjct: 73 QG 74
>gi|1431583|emb|CAA66974.1| pcd1+ [Schizosaccharomyces pombe]
Length = 133
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL-GGNVEFPGLPLHQSIHAEQFLI 83
++ L VK + + P S F VGA + ++ G NVE I AE+ I
Sbjct: 6 IEKLFQEVKESLQYSYCPYSNFAVGACVVSDDKNTYIYGANVE--NASYGNCICAERVAI 63
Query: 84 TNLILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
T + + + V +A PCG CRQ ++E + DIN+ + + +
Sbjct: 64 TKAVSMGYTKFMAIGVMSAKGRVTPCGICRQVIREF--SKDINVYMFH-DDGGYDMKTIE 120
Query: 139 HLLPDRFGPNDL 150
LLPD FGP+DL
Sbjct: 121 ELLPDSFGPDDL 132
>gi|114567082|ref|YP_754236.1| cytidine deaminase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338017|gb|ABI68865.1| cytidine deaminase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 132
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ AQ A P S F VGA L + G+++ G NVE L SI AE+ + + + E
Sbjct: 12 REAQKNAYAPYSNFQVGAALLSAGGKVYTGSNVENSSYGL--SICAERAAVFKAVNDGER 69
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
LAV A+ PCG C Q L E + ++ + IT + ++Y L +LP F
Sbjct: 70 DFALLAVVASGQGYVFPCGACLQVLAEF--SPEMKLIITDEKDHYKEY-ALQDMLPQIF 125
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 180 NPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ +E L A EA ++APYS G A++ G +Y GS +E+++Y S+ +AA+
Sbjct: 2 SSREELLKRAREAQKNAYAPYSNFQVGAALLSAGGKVYTGSNVENSSYGLSICAERAAV 60
>gi|331092341|ref|ZP_08341168.1| cytidine deaminase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401574|gb|EGG81157.1| cytidine deaminase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 137
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L T K A+ + P SKF VGA L G+++ G N+E + AE+ +
Sbjct: 6 LLTEAKKARLKSYAPYSKFQVGAALLTKDGKVYHGCNIE--NASYTPTNCAERTAFFKAV 63
Query: 88 LNAEPRLQHLAVSA-----------APCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
+ + +A+ APCG CRQ + E N + I I + + K
Sbjct: 64 SEGDTEFEKIAIVGGKEGTDADELCAPCGVCRQVMMEFCNPEEFQI-ILADGKDGMKVMS 122
Query: 137 LSHLLPDRFGPNDL 150
L +LP F P+DL
Sbjct: 123 LKEMLPYGFCPSDL 136
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSG 248
A +A KS+APYSK G A++ +G +Y G +E+A+Y P+ + A ++ G +
Sbjct: 10 AKKARLKSYAPYSKFQVGAALLTKDGKVYHGCNIENASYTPTNCAERTAFFKAVSEGDT- 68
Query: 249 GGGGGYERIVAAALVEKEDA 268
+E+I E DA
Sbjct: 69 ----EFEKIAIVGGKEGTDA 84
>gi|389843248|ref|YP_006345328.1| cytidine deaminase [Mesotoga prima MesG1.Ag.4.2]
gi|387857994|gb|AFK06085.1| cytidine deaminase [Mesotoga prima MesG1.Ag.4.2]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ + P SKF VGA L GR+F+G NVE L S+ AE+ I + + N +
Sbjct: 17 AKERSYSPYSKFPVGAALLTEEGRVFVGTNVENSSYGL--SMCAERSAIVSAVSNGYRKF 74
Query: 95 QHLAVSA------APCGHCRQFLQELRN 116
+ +A+ + +PCG CRQF+ E N
Sbjct: 75 RSIAIVSDRKEPTSPCGACRQFMVEFGN 102
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 40/57 (70%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
A+EA +S++PYSK P G A++ EG ++ G+ +E+++Y S+ ++A+V+ ++ G
Sbjct: 14 AIEAKERSYSPYSKFPVGAALLTEEGRVFVGTNVENSSYGLSMCAERSAIVSAVSNG 70
>gi|223646670|gb|ACN10093.1| Cytidine deaminase [Salmo salar]
gi|223672519|gb|ACN12441.1| Cytidine deaminase [Salmo salar]
Length = 166
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA L R+F G NVE L + AE+ I +
Sbjct: 37 AKEFAYCPYSNFRVGAALLAHDDRVFTGCNVENACNNL--GVCAERNAIAKAVSEGCRSF 94
Query: 95 QHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
+ +A+++ +PCG CRQF++E D+ + + E +S LLP FGP
Sbjct: 95 KAIAIASDLHDQFISPCGGCRQFMREFGARWDVYLTKPDGSYKEMN---VSELLPVSFGP 151
Query: 148 NDLLDKDV 155
D+ K V
Sbjct: 152 EDMSMKKV 159
>gi|193216013|ref|YP_001997212.1| cytidine deaminase [Chloroherpeton thalassium ATCC 35110]
gi|193089490|gb|ACF14765.1| cytidine deaminase [Chloroherpeton thalassium ATCC 35110]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A +A P SKF VGA SSG ++ G N+E L S+ AE+ + + E
Sbjct: 94 AMKMAIAPYSKFQVGAALKASSGNVYTGQNIESASFGL--SMCAERVALFKALSEGERGF 151
Query: 95 QHLAVSAAP------CGHCRQFLQELRNTSDINICITSINSN-ERKYHPLSHLLPDRF 145
+ ++++ CG CRQ L E NI + +N E K L LLP+ F
Sbjct: 152 SEIVITSSSDDFCPLCGACRQVLLEFAG----NISVIMVNGKGEMKKQKLQKLLPEAF 205
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 189 ALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSG 248
A EA + APYSK G A+ GN+Y G +ESA++ S+ + AL L+ G G
Sbjct: 91 ANEAMKMAIAPYSKFQVGAALKASSGNVYTGQNIESASFGLSMCAERVALFKALSEGERG 150
>gi|329848721|ref|ZP_08263749.1| cytidine deaminase [Asticcacaulis biprosthecum C19]
gi|328843784|gb|EGF93353.1| cytidine deaminase [Asticcacaulis biprosthecum C19]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
Q L ++A + P S F VGA GRI G N+E P + I AE I +
Sbjct: 3 QDLFEAARAAMRHSHSPYSNFKVGAALRDEDGRIHAGCNIENVAFP--EGICAEGTAIAH 60
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSH 139
LI+ ++ +AV A APCG CRQ L E + + + + N ++ + LS
Sbjct: 61 LIMAGARQILEVAVIAERRDLVAPCGGCRQKLAEF-ASPETRVWLCDANGPQKSF-TLSE 118
Query: 140 LLPDRFGPNDL 150
LLP F + L
Sbjct: 119 LLPAAFATDSL 129
>gi|376285449|ref|YP_005158659.1| Cytidine deaminase [Corynebacterium diphtheriae 31A]
gi|371578964|gb|AEX42632.1| Cytidine deaminase [Corynebacterium diphtheriae 31A]
Length = 140
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI---LNAEPRLQHLA 98
P S F VGA + ++G F G NVE +I AE+ IT +I + A+ R H+A
Sbjct: 25 PYSNFPVGAAVMTTAGETFTGCNVE--NAAYGDTICAERNAITTMIAATMRADER--HIA 80
Query: 99 VSA---------APCGHCRQFLQELRNTSDINICITSINSNER---KYHPLSHLLPDRFG 146
A PCG CRQ L+E C T I +E P + LLP FG
Sbjct: 81 AVAIVGLKASPCWPCGSCRQVLREFH-------CETVIVEDESGNPTSLPFAELLPYSFG 133
Query: 147 PNDLLD 152
P L D
Sbjct: 134 PEALKD 139
>gi|336177052|ref|YP_004582427.1| cytidine deaminase [Frankia symbiont of Datisca glomerata]
gi|334858032|gb|AEH08506.1| cytidine deaminase [Frankia symbiont of Datisca glomerata]
Length = 178
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S+ HVGA + GR+ +G NVE L ++ AE L+ L RL
Sbjct: 40 PYSRLHVGAAAVVDDGRLVVGCNVENASYGL--TLCAECVLVGALHTAGGGRLVAFVCVT 97
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDV 155
PCG CRQ L E ++ + + R L+ LLPD FGP DL D+
Sbjct: 98 GTGAPVLPCGRCRQLLYEHGGP---DLLVATAGGPRR----LADLLPDAFGPADLPSADL 150
Query: 156 P 156
P
Sbjct: 151 P 151
>gi|6478520|gb|AAF13876.1|AF187304_1 cytidine deaminase [Bacillus caldolyticus]
gi|5689607|emb|CAB51902.1| cytidine deaminase [Bacillus caldolyticus]
Length = 132
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ LA P SKF VGA L G ++ G N+E + AE+ + E
Sbjct: 11 KKARELAYVPYSKFPVGAALLTKGGSVYRGCNIENAAYSVCNC--AERTALFKAYSEGEK 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A PCG CRQ + EL + D+ + + ++ + K +S LLP+ F
Sbjct: 69 EFTALAVIADTPRPVPPCGACRQVIAELCH-GDMKVILANLKGD-VKVMTVSELLPEAFS 126
Query: 147 PNDL 150
DL
Sbjct: 127 AEDL 130
>gi|386714537|ref|YP_006180860.1| cytidine deaminase [Halobacillus halophilus DSM 2266]
gi|384074093|emb|CCG45586.1| cytidine deaminase [Halobacillus halophilus DSM 2266]
Length = 135
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K ++ A P SKF VGA L + G ++ G N+E P+ + AE+ I I
Sbjct: 11 KDSREKAYTPYSKFPVGAALLTADGTLYTGCNIENAAYPV--ACCAERVAIFKAISEGHV 68
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSIN-SNERKYHPLSHLLPDRF 145
+ Q LAV A PCG CRQ + E D N+ I + N + K + LLP F
Sbjct: 69 KFQELAVVADTKRPVPPCGSCRQVMSEFF---DSNVKIHASNLLGDCKTVSMDELLPFSF 125
Query: 146 GPNDL 150
DL
Sbjct: 126 SSADL 130
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAY 227
+E+L A ++ K++ PYSK P G A++ +G +Y G +E+AAY
Sbjct: 3 QEQLIQHAKDSREKAYTPYSKFPVGAALLTADGTLYTGCNIENAAY 48
>gi|126725061|ref|ZP_01740904.1| cytidine deaminase [Rhodobacterales bacterium HTCC2150]
gi|126706225|gb|EBA05315.1| cytidine deaminase [Rhodobacteraceae bacterium HTCC2150]
Length = 131
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 30 TLVK---SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNL 86
TL+K +A+ A P SKF VGA + G ++ G NVE P + AE I +
Sbjct: 4 TLLKDALAARLNAHAPYSKFLVGAAIRTADGTVYQGCNVENIAYP--EGTCAEAGAIAAM 61
Query: 87 ILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ E ++ + V A PCG CRQ L E + D+ + + ++ E K + L
Sbjct: 62 CVAGERKIAEVCVVADSPLPVTPCGGCRQKLAEF-SAPDVVVTMATLGGEEIKTT-VGEL 119
Query: 141 LPDRFGPNDL 150
LP FGP+ +
Sbjct: 120 LPGAFGPDHM 129
>gi|341885496|gb|EGT41431.1| hypothetical protein CAEBREN_31593 [Caenorhabditis brenneri]
Length = 166
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 31 LVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA 90
L ++A A P SKF VGA L SG I LG NVE +I AE+ + + +
Sbjct: 17 LARTALKRAHCPYSKFPVGAALLTESGEIILGCNVE--NASYGGTICAERSAVVSAVSQG 74
Query: 91 EPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDR 144
+ + ++V A+PCG CRQFL E D + I + + + LLP
Sbjct: 75 HTKFRAISVVTELNEPASPCGLCRQFLVEF---GDFKVIIGTAFNTKILITSTRDLLPFA 131
Query: 145 FGPNDL 150
F P L
Sbjct: 132 FTPESL 137
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243
L + A A ++H PYSK P G A++ G I G +E+A+Y ++ ++A+V+ ++
Sbjct: 13 ELVHLARTALKRAHCPYSKFPVGAALLTESGEIILGCNVENASYGGTICAERSAVVSAVS 72
Query: 244 AG 245
G
Sbjct: 73 QG 74
>gi|110764733|ref|XP_001122944.1| PREDICTED: cytidine deaminase-like [Apis mellifera]
Length = 148
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P SKF VGA L G IF G NVE P+ AE+ I + + + + L V A
Sbjct: 33 PYSKFKVGAAILCDDGSIFTGCNVENASYPVGTC--AERTAIVKAVSEGKRKFKVLTVVA 90
Query: 102 --------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
PCG CRQ + E DI I +T + LS+LLP FG
Sbjct: 91 DKKNNIFTTPCGFCRQAIAEF---GDILIYLTGPDMKNVLKTTLSNLLPHAFG 140
>gi|325282508|ref|YP_004255049.1| cytidine deaminase [Deinococcus proteolyticus MRP]
gi|324314317|gb|ADY25432.1| cytidine deaminase [Deinococcus proteolyticus MRP]
Length = 148
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 29 PTLVKSAQTL---ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
P L+++AQ A P SKFHVGA SG+I+ G NVE L + AEQ +
Sbjct: 17 PQLLEAAQVAFKQAYAPYSKFHVGAALRSESGQIYFGANVENASYGLTRC--AEQSAVQT 74
Query: 86 LILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICIT 125
L E + + V A+PCG CRQ L E + + +C+
Sbjct: 75 LASRGERHFEDIVVYSEAEPPASPCGACRQILFEFAPDARV-VCVN 119
>gi|262201722|ref|YP_003272930.1| cytidine deaminase [Gordonia bronchialis DSM 43247]
gi|262085069|gb|ACY21037.1| cytidine deaminase [Gordonia bronchialis DSM 43247]
Length = 133
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P S+F VGA + GR +G NVE L I AE L+ L+ RL ++
Sbjct: 21 AYAPYSRFPVGAAAITDDGRYVVGCNVENVSYGL--GICAEVALVAQLVTGGSSRLVAVS 78
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
V + PCG CRQ L E + + L+ LLPD FGP+DL
Sbjct: 79 VCDSRGSVLMPCGRCRQVLYEHGGGE-------LLVDHRDGPRTLAALLPDAFGPDDL 129
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 177 ETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
TE L++ A + +++APYS+ P G A + +G G +E+ +Y + +
Sbjct: 2 RTEIDWNVLRHNANKMIERAYAPYSRFPVGAAAITDDGRYVVGCNVENVSYGLGI-CAEV 60
Query: 237 ALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVV 270
ALVA L GGS R+VA ++ + +V+
Sbjct: 61 ALVAQLVTGGS-------SRLVAVSVCDSRGSVL 87
>gi|338730764|ref|YP_004660156.1| cytidine deaminase [Thermotoga thermarum DSM 5069]
gi|335365115|gb|AEH51060.1| cytidine deaminase [Thermotoga thermarum DSM 5069]
Length = 134
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ +K+ Q A P S F VGA L SG+++LG NVE L +I AE+ I +
Sbjct: 9 ELIELALKAMQK-AYAPYSNFKVGAALLTKSGKVYLGCNVENASYGL--TICAERVAIFS 65
Query: 86 LILNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDI 120
+ + E + L V A +PCG CRQ + E N I
Sbjct: 66 AVADGEREFEKLVVVANTPLPVSPCGACRQVMAEFGNFEVI 106
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L AL+A K++APYS G A++ G +Y G +E+A+Y ++ + A+ + +
Sbjct: 8 EELIELALKAMQKAYAPYSNFKVGAALLTKSGKVYLGCNVENASYGLTICAERVAIFSAV 67
Query: 243 AAG 245
A G
Sbjct: 68 ADG 70
>gi|326774155|ref|ZP_08233437.1| cytidine deaminase [Actinomyces viscosus C505]
gi|326636294|gb|EGE37198.1| cytidine deaminase [Actinomyces viscosus C505]
Length = 144
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L L A T A P S+F VGA L GR+ G NVE G + ++ AE L++
Sbjct: 14 WRALHELAVEAMTHAYAPYSRFKVGAAALVDDGRLVSGCNVENAGYGV--TLCAECGLVS 71
Query: 85 NLILNAEPRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
L RL A + APCG CRQ L E + + + S +
Sbjct: 72 ELTRTGGGRLVAFACVDAHGRALAPCGRCRQLLSEHAADGMVLAMPSGMMS-------ID 124
Query: 139 HLLPDRFGPNDL 150
+LPDRF +D+
Sbjct: 125 EVLPDRFCADDV 136
>gi|167644684|ref|YP_001682347.1| cytidine deaminase [Caulobacter sp. K31]
gi|167347114|gb|ABZ69849.1| cytidine deaminase [Caulobacter sp. K31]
Length = 142
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 44 SKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA- 102
S F V A + GR LG NVE P AEQ I ++ + + ++A
Sbjct: 33 SNFTVAAAVIDQDGRAHLGVNVENAAYP--SGTCAEQTAIGAMVTAGGRGIARVLIAAGS 90
Query: 103 -----PCGHCRQFLQELRNTSDINIC-ITSI-NSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ + E ++ C I S+ N + P LLPD FGP DL
Sbjct: 91 NAVVQPCGACRQRIAEFA----VDTCEIVSVQNGQATRRTPFWSLLPDSFGPRDL 141
>gi|256380437|ref|YP_003104097.1| zinc-binding CMP/dCMP deaminase [Actinosynnema mirum DSM 43827]
gi|255924740|gb|ACU40251.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
Length = 147
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S VG+ L GR+ +G NVE L + AE + L L R + S
Sbjct: 41 PYSGLKVGSAALCDDGRVVVGCNVENASYGL--GLCAECAMAGQLRLTGGGRFVAVTCSD 98
Query: 102 A------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
PCG CRQ L EL C+ S P+S +LPD FGP DL
Sbjct: 99 GEGRLLMPCGRCRQVLYELGGAD----CLVETPSG---VLPMSAVLPDAFGPEDL 146
>gi|453067721|ref|ZP_21971007.1| cytidine deaminase [Rhodococcus qingshengii BKS 20-40]
gi|452766664|gb|EME24908.1| cytidine deaminase [Rhodococcus qingshengii BKS 20-40]
Length = 134
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 31 LVKSAQTLAR---PPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L +AQ + R P S + VGA L GRI G NVE L S+ AE L+ NL
Sbjct: 9 LRHNAQVVMRHAYAPYSGYAVGAAALVDDGRIVSGCNVENVSYGL--SLCAECGLVGNLA 66
Query: 88 LNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
RL A PCG CRQ L E ++ + +S + PLS LL
Sbjct: 67 ATGGGRLIAFTCCDAKGSILMPCGRCRQLLLE-HGGGEMLVDTSS------GFKPLSELL 119
Query: 142 PDRFGP 147
PD FGP
Sbjct: 120 PDAFGP 125
>gi|448303089|ref|ZP_21493039.1| cytidine deaminase [Natronorubrum sulfidifaciens JCM 14089]
gi|445594096|gb|ELY48263.1| cytidine deaminase [Natronorubrum sulfidifaciens JCM 14089]
Length = 130
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
++ Q+ A P S++ VGA SG +F+G N+E S+HAE+ I +
Sbjct: 9 RNVQSAAHVPYSEYAVGAALETDSGEVFVGCNLENANYS--NSLHAEEVAIAEAVKTGHR 66
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
+AVS++ PCG CRQ L E + + IC +Y L LLP+
Sbjct: 67 EFTRIAVSSSRRDGVTPCGMCRQTLTEFCDDDLLVICDEGEGEPPTEY-TLGELLPNTIS 125
Query: 147 PNDL 150
L
Sbjct: 126 EETL 129
>gi|345016915|ref|YP_004819268.1| cytidine deaminase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032258|gb|AEM77984.1| cytidine deaminase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 135
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K A+ A P S F VGA L G+ + G N+E L AE+ + +
Sbjct: 9 LIELAKEAREKAYVPYSHFKVGACVLTEDGKTYQGCNIENASYGLTNC--AERTALFSAY 66
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
N + +L+ +AV A +PCG CRQ + EL D+ + ++++ + + LL
Sbjct: 67 ANGDRKLKAIAVVADTEGPVSPCGACRQVMLEL-GGEDMTVILSNMKGD-YAVVTVKDLL 124
Query: 142 PDRFGPNDL 150
P F DL
Sbjct: 125 PGAFTSKDL 133
>gi|399041473|ref|ZP_10736528.1| cytidine deaminase, homotetrameric [Rhizobium sp. CF122]
gi|398060243|gb|EJL52072.1| cytidine deaminase, homotetrameric [Rhizobium sp. CF122]
Length = 129
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA G+++ G N+E L Q AE I+ +I+
Sbjct: 10 RGAMAFAHAPYSKFPVGAAIRADDGKVYTGANIE--NLSFPQGWCAEPTAISAMIMGGAK 67
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ + E + D I + + +K + LLP F
Sbjct: 68 KIVEMAVIAEKLPLCPPCGGCRQKISEF-ASKDTKIYLCD-EAGVKKTMTMDELLPFSF 124
>gi|333026698|ref|ZP_08454762.1| putative cytidine deaminase [Streptomyces sp. Tu6071]
gi|332746550|gb|EGJ76991.1| putative cytidine deaminase [Streptomyces sp. Tu6071]
Length = 132
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
++A A P S + VGA + GR G NVE L S+ AE L++ L+L+
Sbjct: 18 RTAMLQAYAPYSGYRVGAAARVADGRTVTGCNVENASYGL--SLCAECGLVSQLLLSGGG 75
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
RL H PCG CRQ L E + D + T+ L+ LPD FG
Sbjct: 76 RLTHFTCVDGEGQVLMPCGRCRQLLHE--HGGDALLLETAAG-----VRTLAQQLPDAFG 128
Query: 147 PNDL 150
P+ L
Sbjct: 129 PHKL 132
>gi|448358690|ref|ZP_21547367.1| cytidine deaminase [Natrialba chahannaoensis JCM 10990]
gi|445645272|gb|ELY98278.1| cytidine deaminase [Natrialba chahannaoensis JCM 10990]
Length = 193
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ Q+ A P S++ VGA + G +F+G N+E S+HAE+ I + N
Sbjct: 72 RDIQSAAHVPYSEYRVGAALETADGEVFVGCNLE--NANFSNSLHAEEVAIAEAVKNGHR 129
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
LAVS+ PCG CRQ L E I C + Y L LLP+
Sbjct: 130 EFTRLAVSSDRRDGVTPCGMCRQTLSEFCEDDLIVFCDEGEDEGPTVYT-LGDLLPN 185
>gi|318060159|ref|ZP_07978882.1| cytidine deaminase [Streptomyces sp. SA3_actG]
gi|318075408|ref|ZP_07982740.1| cytidine deaminase [Streptomyces sp. SA3_actF]
Length = 134
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
++A A P S + VGA + GR G NVE L S+ AE L++ L+L+
Sbjct: 20 RTAMLQAYAPYSGYRVGAAARVADGRTVTGCNVENASYGL--SLCAECGLVSQLLLSGGG 77
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
RL H PCG CRQ L E + D + T+ L+ LPD FG
Sbjct: 78 RLTHFTCVDGEGQVLMPCGRCRQLLHE--HGGDALLLETAAG-----VRTLAQQLPDAFG 130
Query: 147 PNDL 150
P+ L
Sbjct: 131 PHKL 134
>gi|119484038|ref|XP_001261922.1| cytidine deaminase, putative [Neosartorya fischeri NRRL 181]
gi|119410078|gb|EAW20025.1| cytidine deaminase, putative [Neosartorya fischeri NRRL 181]
Length = 153
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 16 MAQKSGLTV--LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLH 73
MA SGLT+ L+ L + +A+ A P SKF VGA L +G G NVE P+
Sbjct: 1 MATLSGLTMQELETLSSKAIAAKANAYCPYSKFRVGACVLTKTGEYIAGANVENVAYPVG 60
Query: 74 QSIHAEQFLITNLILNAEPRLQHLAVS------AAPCGHCRQFLQEL 114
AE+ + + +AV+ A+PCG CRQF++E
Sbjct: 61 TC--AERVAFGTAVAAGHQDFKAVAVATDITPGASPCGMCRQFMREF 105
>gi|159146785|gb|ABW90692.1| cytidine deaminase [Haliotis diversicolor supertexta]
Length = 149
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 36 QTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQ 95
+ +A P SKF VGA L G +F G NVE L SI AE+ I + +
Sbjct: 20 KKMAYCPYSKFPVGAALLTEDGTVFTGCNVENASYGL--SICAERTAIVKAVSEGHRKFT 77
Query: 96 HLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149
+A+++ PCG CRQ L E D+ + + K + LLP F P+D
Sbjct: 78 AIAIASDMKEMIVPCGVCRQSLVEFGVDWDMYMTKPDMT---YKVMKVKELLPLAFVPSD 134
Query: 150 LLDKDVP 156
L + +P
Sbjct: 135 LQRERLP 141
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 175 IPE-TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGP 233
+PE +E +++ A+ E ++ PYSK P G A++ +G ++ G +E+A+Y S+
Sbjct: 1 MPEYSEEQLQKILKASHEVKKMAYCPYSKFPVGAALLTEDGTVFTGCNVENASYGLSICA 60
Query: 234 VQAALVAYLAAG 245
+ A+V ++ G
Sbjct: 61 ERTAIVKAVSEG 72
>gi|399924388|ref|ZP_10781746.1| cytidine deaminase [Peptoniphilus rhinitidis 1-13]
Length = 137
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITN 85
+L+ + + P S F+VG G ++ GGN+E AE+ I
Sbjct: 5 KLIELAIYARDNSTYTPYSHFNVGCAVEMEDGEVYTGGNIEIASYSPTNC--AERTAIFK 62
Query: 86 LILNAEPRLQHLAVSAA-----PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ + + ++ +A+ PCG CRQ ++E +I I + + + K + + +
Sbjct: 63 AVSDGKREIKKIAIVGDSDYTFPCGVCRQVIREFSKKPEI---IIANSKEDYKIYGMEEI 119
Query: 141 LPDRFGPNDLL 151
LP FGP DL+
Sbjct: 120 LPHSFGPEDLV 130
>gi|429190392|ref|YP_007176070.1| cytidine deaminase [Natronobacterium gregoryi SP2]
gi|448326302|ref|ZP_21515669.1| cytidine deaminase [Natronobacterium gregoryi SP2]
gi|429134610|gb|AFZ71621.1| cytidine deaminase, homotetrameric [Natronobacterium gregoryi SP2]
gi|445612959|gb|ELY66676.1| cytidine deaminase [Natronobacterium gregoryi SP2]
Length = 131
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81
++V +LL + Q+ A P S++ VGA + G +F+G N+E S+HAE+
Sbjct: 1 MSVSELLER-AREIQSSAHVPYSEYRVGAALETTDGAVFVGCNLENANFS--NSLHAEEV 57
Query: 82 LITNLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYH 135
I + N +AVS++ PCG CRQ L E +D + + + +
Sbjct: 58 AIAEAVKNGHRDFDRIAVSSSRRDGVTPCGMCRQTLAEF--CADDLVIVCDEGDEQPTEY 115
Query: 136 PLSHLLPD 143
L LLP+
Sbjct: 116 TLGELLPN 123
>gi|154507787|ref|ZP_02043429.1| hypothetical protein ACTODO_00269 [Actinomyces odontolyticus ATCC
17982]
gi|153797421|gb|EDN79841.1| cytidine deaminase [Actinomyces odontolyticus ATCC 17982]
Length = 151
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 19/117 (16%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S F VGAVGL + G + G NVE G + ++ AE ++++LI + L +AV A
Sbjct: 25 PYSNFPVGAVGLTADGWLVSGCNVENAGYGV--TLCAECGMVSDLIRSGGGTL--VAVVA 80
Query: 102 --------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
APCG CRQ + E S C+ + P++ +LP FGP+DL
Sbjct: 81 VNGNEEPVAPCGRCRQLIYEHGGPS----CLVLMPDG---VAPMTEVLPGAFGPHDL 130
>gi|335032858|ref|ZP_08526230.1| cytidine deaminase [Agrobacterium sp. ATCC 31749]
gi|333795534|gb|EGL66859.1| cytidine deaminase [Agrobacterium sp. ATCC 31749]
Length = 134
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A A P SKF VGA G+I+ G N+E P Q AE I+ +I+ ++
Sbjct: 17 AMAFAYAPYSKFPVGAAIRAEDGKIYKGANIENISFP--QGWCAEPSAISAMIMGGAKKI 74
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+AV A +PCG CRQ + E T D I + + +K + LLP F
Sbjct: 75 SEVAVIAEKLPLCSPCGGCRQKIAEFA-TPDTKIYLCD-EAGVQKVMTMEELLPFSF 129
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 178 TENPKERLKY-AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQA 236
+ +PK + AA+EA ++APYSK P G AI +G IYKG+ +E+ ++ +
Sbjct: 2 SSDPKSHALFEAAVEAMAFAYAPYSKFPVGAAIRAEDGKIYKGANIENISFPQGWCAEPS 61
Query: 237 ALVAYLAAGG 246
A+ A + G
Sbjct: 62 AISAMIMGGA 71
>gi|154290352|ref|XP_001545772.1| hypothetical protein BC1G_15730 [Botryotinia fuckeliana B05.10]
Length = 169
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+ L + SA++ A P S F VGA L + G+ G NVE P+ AE+
Sbjct: 31 ISTLQSRCASAKSTAYCPYSNFRVGATILTNEGKYVDGANVENAAYPVGTC--AERVAFG 88
Query: 85 NLILNAEPRLQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSN-ERKYHPL 137
I + +AV+ A+PCG CRQF++E ++++ I + N + L
Sbjct: 89 KAITEGHKGFKTIAVATDISPPASPCGMCRQFIREF---CELDMPIFMFDKNGDFMVARL 145
Query: 138 SHLLPDRFGPNDL 150
LLP FGP L
Sbjct: 146 GELLPLSFGPEAL 158
>gi|153953549|ref|YP_001394314.1| cytidine deaminase [Clostridium kluyveri DSM 555]
gi|219854171|ref|YP_002471293.1| hypothetical protein CKR_0828 [Clostridium kluyveri NBRC 12016]
gi|146346430|gb|EDK32966.1| Cdd [Clostridium kluyveri DSM 555]
gi|219567895|dbj|BAH05879.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 138
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 34 SAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR 93
A+ LA P SKF VGA L G I+ G N+E + + AE+ + +
Sbjct: 12 DAKKLAYAPYSKFRVGAAVLTGDGNIYTGCNIE--NVSYGATNCAERTAVFKAVSEGHRD 69
Query: 94 LQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147
L+ +A++ + PCG CRQ + E D+ I I N NE L +LP F
Sbjct: 70 LRAIAIAGSNKEYTYPCGICRQVISEFAR-EDMEIIIVK-NENEYMVKKLEEILPYAFIK 127
Query: 148 NDLLDKD 154
L +++
Sbjct: 128 KHLENRE 134
>gi|452847456|gb|EME49388.1| hypothetical protein DOTSEDRAFT_163720 [Dothistroma septosporum
NZE10]
Length = 166
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+Q L A+ A P S F VG L ++G I G NVE P+ AE+ I
Sbjct: 25 VQKLSETCIEAKARAYCPYSHFRVGCSLLLANGDIVQGANVENAAYPVGTC--AERVTIA 82
Query: 85 NLILNAEPR--LQHLAVS------AAPCGHCRQFLQELRNTSDINICITSINSNERKYHP 136
I + ++ +AV+ A+PCG CRQF++E S + +
Sbjct: 83 TAICQGAKKGDIRAIAVATDISPPASPCGMCRQFIREFCEQS--TPILMYDKDGKSVVMT 140
Query: 137 LSHLLPDRFGPNDLLDKDV 155
L LLP FGP LL DV
Sbjct: 141 LEQLLPMSFGPEKLLGTDV 159
>gi|167038222|ref|YP_001665800.1| cytidine deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167039068|ref|YP_001662053.1| cytidine deaminase [Thermoanaerobacter sp. X514]
gi|256751565|ref|ZP_05492441.1| cytidine deaminase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913342|ref|ZP_07130659.1| cytidine deaminase [Thermoanaerobacter sp. X561]
gi|307723644|ref|YP_003903395.1| cytidine deaminase [Thermoanaerobacter sp. X513]
gi|320116632|ref|YP_004186791.1| cytidine deaminase [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166853308|gb|ABY91717.1| cytidine deaminase [Thermoanaerobacter sp. X514]
gi|166857056|gb|ABY95464.1| cytidine deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256749515|gb|EEU62543.1| cytidine deaminase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890027|gb|EFK85172.1| cytidine deaminase [Thermoanaerobacter sp. X561]
gi|307580705|gb|ADN54104.1| cytidine deaminase [Thermoanaerobacter sp. X513]
gi|319929723|gb|ADV80408.1| cytidine deaminase [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 135
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 28 LPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLI 87
L L K A+ A P S F VGA L G+ + G N+E L AE+ + +
Sbjct: 9 LVELAKDAREKAYVPYSHFKVGACVLTEDGKAYQGCNIENASYGLTNC--AERTALFSAY 66
Query: 88 LNAEPRLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLL 141
N + +L+ +AV A +PCG CRQ + EL D+ + ++++ + + LL
Sbjct: 67 ANGDRKLKAIAVVADTEGPVSPCGACRQVMMEL-GGEDMVVILSNMKGD-YAVVTVKDLL 124
Query: 142 PDRFGPNDL 150
P F DL
Sbjct: 125 PGAFTSKDL 133
>gi|398355752|ref|YP_006401216.1| cytidine deaminase Cdd [Sinorhizobium fredii USDA 257]
gi|390131078|gb|AFL54459.1| cytidine deaminase Cdd [Sinorhizobium fredii USDA 257]
Length = 157
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A A P SKF VGA G+I+ G N+E P + AE I+++++ +
Sbjct: 37 REAMAKAHAPYSKFPVGAAIRAEDGQIYTGANIENLSFP--EGWCAETTAISHMVMAGQR 94
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSD-INICITSINSNERKYHPLSHLLPDRF 145
++ +AV A PCG CRQ L E S I +C + +K LS LLP F
Sbjct: 95 KIMEVAVIAEKLALCPPCGGCRQRLAEFSGASTRIYLC---DETGIKKSLALSDLLPHSF 151
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 172 NGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSL 231
N P +EN L AA EA K+HAPYSK P G AI +G IY G+ +E+ ++ P
Sbjct: 22 NKDRPMSEN---ELFVAAREAMAKAHAPYSKFPVGAAIRAEDGQIYTGANIENLSF-PEG 77
Query: 232 GPVQAALVAYLAAGG 246
+ ++++ G
Sbjct: 78 WCAETTAISHMVMAG 92
>gi|111023212|ref|YP_706184.1| cytidine deaminase [Rhodococcus jostii RHA1]
gi|397736637|ref|ZP_10503318.1| cytidine deaminase [Rhodococcus sp. JVH1]
gi|110822742|gb|ABG98026.1| probable cytidine deaminase [Rhodococcus jostii RHA1]
gi|396927547|gb|EJI94775.1| cytidine deaminase [Rhodococcus sp. JVH1]
Length = 134
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84
+LL + A P S F VGA L GRI +G NVE L + AE L+
Sbjct: 6 WKLLRANAREVMGQAYAPYSGFAVGAAALVDDGRIVVGCNVENVSYGL--GLCAECVLVG 63
Query: 85 NLILNAEPRLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLS 138
NL RL A PCG CRQ L E + + PL
Sbjct: 64 NLFAGGGGRLIAFTCCDASGDILMPCGRCRQILFEHGGPG-------LLVDHRAGVRPLE 116
Query: 139 HLLPDRFGPND 149
LLPD FGP +
Sbjct: 117 QLLPDAFGPEE 127
>gi|334141431|ref|YP_004534637.1| cytidine deaminase [Novosphingobium sp. PP1Y]
gi|333939461|emb|CCA92819.1| cytidine deaminase [Novosphingobium sp. PP1Y]
Length = 144
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFP--GLPL-HQSIHAEQF--------LITNLILNA 90
P SKFHVGA L + G + G NVE GL L +++ + + LI +
Sbjct: 24 PYSKFHVGAALLFADGSVVTGANVENASYGLSLCAETVASAKVLSSGGSGGLIAVAVTGG 83
Query: 91 EPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
P + PCG CRQ L EL + I N LS LLP FGP +L
Sbjct: 84 VPGQPGSGATVTPCGRCRQVLNELAQLGGTDPLIWCDGDNGGLELRLSELLPHAFGPANL 143
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 197 HAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGG 249
+APYSK G A++ +G++ G+ +E+A+Y SL A L++GGSGG
Sbjct: 22 YAPYSKFHVGAALLFADGSVVTGANVENASYGLSLCAETVASAKVLSSGGSGG 74
>gi|331085621|ref|ZP_08334705.1| cytidine deaminase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407508|gb|EGG87010.1| cytidine deaminase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 137
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA L SG+++ G N+E + AE+ + E
Sbjct: 13 AREYAYTPYSDFRVGAALLTKSGKLYYGCNIE--SASYTPTNCAERTAFFKAVSEGEREF 70
Query: 95 QHLAVSA-----------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPD 143
+ +A+ APCG CRQ +QE + I + KY L LLP
Sbjct: 71 EGIAIVGGKGTGRSGNVCAPCGVCRQVMQEFCRPDEFYIVLEDGKGGWNKYL-LKELLPL 129
Query: 144 RFGPNDL 150
FGP +L
Sbjct: 130 GFGPENL 136
>gi|255524677|ref|ZP_05391629.1| cytidine deaminase [Clostridium carboxidivorans P7]
gi|296185636|ref|ZP_06854045.1| cytidine deaminase [Clostridium carboxidivorans P7]
gi|255511571|gb|EET87859.1| cytidine deaminase [Clostridium carboxidivorans P7]
gi|296049764|gb|EFG89189.1| cytidine deaminase [Clostridium carboxidivorans P7]
Length = 132
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 39 ARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLA 98
A P SKF VGA L G+++ G N+E AE+ I + ++ +A
Sbjct: 17 AYAPYSKFKVGAAVLTEDGKVYTGCNIENASYGATNC--AERTAIFKAVSEGYTTIKAIA 74
Query: 99 VSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151
+ PCG CRQ + E + DI I I N NE L +LP F DL+
Sbjct: 75 IVGIENEYTYPCGICRQVIAEF-GSEDIEI-ILGKNENEYIVKTLDEILPGAFTKRDLI 131
>gi|256829617|ref|YP_003158345.1| cytidine deaminase [Desulfomicrobium baculatum DSM 4028]
gi|256578793|gb|ACU89929.1| cytidine deaminase [Desulfomicrobium baculatum DSM 4028]
Length = 144
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 18 QKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIH 77
Q G + Q L + A A P S F VGA LG +G I+ G NVE L L
Sbjct: 8 QGLGAAIAQRLLEEARLAAGYAYAPYSNFRVGAAVLGGNGTIYTGVNVENASLGLGTC-- 65
Query: 78 AEQFLITNLILNAEPRLQHLAVSAA------------PCGHCRQFLQELRNTSDINICIT 125
AE+ + + I + E + LAVS PCG C Q++QEL ++I I
Sbjct: 66 AERVALASAIADGERTIVALAVSCVDAPADSPPAQRMPCGACLQWIQELAPQAEIFIL-- 123
Query: 126 SINSNERKYHPLSHLLPDRF 145
E + + LLP F
Sbjct: 124 ----GENQSFQIHDLLPVAF 139
>gi|441522231|ref|ZP_21003881.1| cytidine deaminase [Gordonia sihwensis NBRC 108236]
gi|441458190|dbj|GAC61842.1| cytidine deaminase [Gordonia sihwensis NBRC 108236]
Length = 141
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFP----GLPLHQSIHAEQFLITNLIL 88
+A T A P S F VGA G+ SG+I G NVE GL S+ A + +
Sbjct: 15 STAMTRAYAPYSGFAVGAAGITLSGQIITGSNVENVSYGLGLCAEVSMVAAGISLGRMDA 74
Query: 89 NAEPRLQHLAVSA--------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHL 140
+ R + +AVS PCG CRQ L E + + S PL L
Sbjct: 75 DRASRERLIAVSVCDARGSVLTPCGRCRQVLLEFGGE---ELLVDSAAGP----RPLREL 127
Query: 141 LPDRFGPNDL 150
LPD FGP L
Sbjct: 128 LPDAFGPGHL 137
>gi|402815646|ref|ZP_10865238.1| cytidine deaminase Cdd [Paenibacillus alvei DSM 29]
gi|402506686|gb|EJW17209.1| cytidine deaminase Cdd [Paenibacillus alvei DSM 29]
Length = 133
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA L + G I+ G NVE L AE+ + + + ++
Sbjct: 12 ARKQAYAPYSHFQVGAAIL-ADGVIYRGCNVENASYGLTNC--AERTAVFKAVSEGKTKV 68
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
+ +AV A +PCG CRQ L E + D I +T++ N ++ +S LLP F
Sbjct: 69 EAVAVVADTDGPVSPCGACRQVLAEFCD-GDTKIYLTNLKGNTEEW-TMSQLLPGAFSGA 126
Query: 149 DLLDKD 154
D ++KD
Sbjct: 127 D-MEKD 131
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAY 241
K++L ALEA +++APYS G AI+ +G IY+G +E+A+Y + + A+
Sbjct: 2 KDQLIQEALEARKQAYAPYSHFQVGAAIL-ADGVIYRGCNVENASYGLTNCAERTAVFKA 60
Query: 242 LAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCE 288
++ G + ++ A A+V D V A R QV++ C+
Sbjct: 61 VSEGKT--------KVEAVAVVADTDGPVSPCGACR---QVLAEFCD 96
>gi|334336494|ref|YP_004541646.1| cytidine deaminase [Isoptericola variabilis 225]
gi|334106862|gb|AEG43752.1| cytidine deaminase [Isoptericola variabilis 225]
Length = 141
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ T A P S+F VGA L GR+ +G NVE + ++ AE L++ L++
Sbjct: 24 RDVATRAYVPYSRFPVGAAALVDDGRVVVGCNVENAAYGV--TLCAECSLVSALVVGGGG 81
Query: 93 RLQHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
RL PCG CRQ L E + + R P++ +LPD FG
Sbjct: 82 RLVAFTCVDRNGDVLMPCGRCRQLLWE-HGGPGLQV------ETVRGVVPMTEVLPDAFG 134
Query: 147 PNDLLDK 153
DL ++
Sbjct: 135 AADLENR 141
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
E E L+ AA + A +++ PYS+ P G A + +G + G +E+AAY +L + +L
Sbjct: 13 EVDWEALRAAARDVATRAYVPYSRFPVGAAALVDDGRVVVGCNVENAAYGVTLC-AECSL 71
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
V+ L GG G R+VA V++ V+ R LL
Sbjct: 72 VSALVVGGGG-------RLVAFTCVDRNGDVLMPCGRCRQLLW 107
>gi|359397913|ref|ZP_09190938.1| cytidine deaminase [Novosphingobium pentaromativorans US6-1]
gi|357600799|gb|EHJ62493.1| cytidine deaminase [Novosphingobium pentaromativorans US6-1]
Length = 144
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFP--GLPL-HQSIHAEQF--------LITNLILNA 90
P SKFHVGA L + G + G NVE GL L +++ + + LI +
Sbjct: 24 PYSKFHVGAALLFADGSVVTGANVENASYGLSLCAETVASAKVLSSGGRGGLIAVAVTGG 83
Query: 91 EPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150
P + PCG CRQ L EL + I N LS LLP FGP +L
Sbjct: 84 VPGQPGRGATVTPCGRCRQVLNELAQLGGTDPLIWCDGENGGLELRLSELLPHAFGPANL 143
>gi|154686790|ref|YP_001421951.1| hypothetical protein RBAM_023600 [Bacillus amyloliquefaciens FZB42]
gi|375363062|ref|YP_005131101.1| cytidine deaminase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|384266140|ref|YP_005421847.1| cytidine deaminase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385265528|ref|ZP_10043615.1| Cytidine and deoxycytidylate deaminase zinc-binding region
[Bacillus sp. 5B6]
gi|387899163|ref|YP_006329459.1| cytidine deaminase [Bacillus amyloliquefaciens Y2]
gi|394992071|ref|ZP_10384864.1| cytidine deaminase [Bacillus sp. 916]
gi|421730952|ref|ZP_16170078.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505938|ref|YP_007187122.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346264|ref|YP_007444895.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens IT-45]
gi|452856294|ref|YP_007497977.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154352641|gb|ABS74720.1| Cdd [Bacillus amyloliquefaciens FZB42]
gi|371569056|emb|CCF05906.1| cytidine deaminase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|380499493|emb|CCG50531.1| cytidine deaminase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385150024|gb|EIF13961.1| Cytidine and deoxycytidylate deaminase zinc-binding region
[Bacillus sp. 5B6]
gi|387173273|gb|AFJ62734.1| cytidine deaminase [Bacillus amyloliquefaciens Y2]
gi|393807087|gb|EJD68413.1| cytidine deaminase [Bacillus sp. 916]
gi|407075106|gb|EKE48093.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487528|gb|AFZ91452.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850022|gb|AGF27014.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens IT-45]
gi|452080554|emb|CCP22317.1| cytidine/deoxycytidine deaminase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 136
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 35 AQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL 94
A+ A P S F VGA L G+++ G N+E + AE+ I + +
Sbjct: 13 ARDTAYVPYSNFRVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTAIFKAVSEGDTEF 70
Query: 95 QHLAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148
LAV+A +PCG CRQ + EL + D+ + +T++ + K LLP F
Sbjct: 71 AMLAVAADTPGPVSPCGACRQVISEL-CSKDMLVILTNLQ-GQIKEMTAEELLPGAFSSE 128
Query: 149 DLLDK 153
DL D+
Sbjct: 129 DLHDE 133
>gi|239827760|ref|YP_002950384.1| cytidine deaminase [Geobacillus sp. WCH70]
gi|239808053|gb|ACS25118.1| cytidine deaminase [Geobacillus sp. WCH70]
Length = 159
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
K A+ A P SKF VGA L G+++ G N+E + AE+ + +
Sbjct: 38 KKARGYAYVPYSKFKVGAALLTKDGKVYRGCNIENAAYSMCNC--AERTALFKAYSEGDK 95
Query: 93 RLQHLAVSAA------PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFG 146
LAV A PCG CRQ + EL SD+ I + ++N + + + LLP+ F
Sbjct: 96 EFAALAVIADTPRPVPPCGACRQVISEL-CPSDMKIILANLNGDITEL-TVKELLPNAFS 153
Query: 147 PNDL 150
DL
Sbjct: 154 AEDL 157
>gi|417003678|ref|ZP_11942667.1| cytidine deaminase [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478378|gb|EGC81493.1| cytidine deaminase [Anaerococcus prevotii ACS-065-V-Col13]
Length = 131
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS- 100
P S F V AV + +G I+ G N+E P +I AE+ + I + ++
Sbjct: 21 PYSNFRVSAVVMTKNGEIYKGVNIENASYP--ATICAERSALAAAISEGARDFHTIVITG 78
Query: 101 ----AAPCGHCRQFLQELRNTSDINICITSINS-NERKYHPLSHLLPDRFGPNDLL 151
PCG CRQF+ E+ DI+ + NS + K + + LLP F DLL
Sbjct: 79 DSNDTYPCGVCRQFMAEVL---DIDTKVVIANSPTDYKTYSMEDLLPHSFSKKDLL 131
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
E L AL+ S++PYS +M G IYKG +E+A+Y ++ ++AL A +
Sbjct: 5 EELIQIALDNKENSYSPYSNFRVSAVVMTKNGEIYKGVNIENASYPATICAERSALAAAI 64
Query: 243 AAGG 246
+ G
Sbjct: 65 SEGA 68
>gi|448369478|ref|ZP_21556030.1| cytidine deaminase [Natrialba aegyptia DSM 13077]
gi|445650653|gb|ELZ03569.1| cytidine deaminase [Natrialba aegyptia DSM 13077]
Length = 157
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
P S++ VGA +G +F+G N+E S+HAE+ I + N HLAVS+
Sbjct: 32 PYSEYRVGAALETEAGDVFVGCNLENANFS--NSLHAEEVAIAEAVKNGHREFSHLAVSS 89
Query: 102 ------APCGHCRQFLQEL 114
PCG CRQ L E
Sbjct: 90 DRRDGVTPCGMCRQTLAEF 108
>gi|399154610|ref|ZP_10754677.1| cytidine deaminase [gamma proteobacterium SCGC AAA007-O20]
Length = 131
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 32 VKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE 91
K A + A P S + VGA+ + +G + G NVE P + AE I ++++ E
Sbjct: 10 TKEAMSKAYVPYSNYPVGALIVTKNGNTYSGCNVENASYP--EGHCAETTAIASMVMGGE 67
Query: 92 PRLQHLAV------SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
++ + V PCG CRQ ++E + D + + S + +++ L+ LLP+ F
Sbjct: 68 KNIKMIYVMSQNDQGGCPCGGCRQRIREFSDI-DTQVILCSPSGVQQRLL-LADLLPNSF 125
Query: 146 GPNDLL 151
GP LL
Sbjct: 126 GPEYLL 131
>gi|395821087|ref|XP_003783879.1| PREDICTED: cytidine deaminase [Otolemur garnettii]
Length = 146
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 33 KSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP 92
+ A+ A P S F VGA L G+IF G N+E PL I AE+ I +
Sbjct: 23 QEAKKSAYCPYSHFPVGAALLTKDGKIFSGCNIENACYPL--GICAERTAIQKAVSEGYK 80
Query: 93 RLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRF 145
+A+++ +PCG CRQ ++E ++ + +T ++ + LLP F
Sbjct: 81 DFSAIAIASDLQDNFISPCGACRQVMREF--GTNWAVYMTKLDGT-YVVRTVQELLPASF 137
Query: 146 GPNDL 150
GP DL
Sbjct: 138 GPEDL 142
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,813,817,751
Number of Sequences: 23463169
Number of extensions: 207654717
Number of successful extensions: 946593
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 1053
Number of HSP's that attempted gapping in prelim test: 940508
Number of HSP's gapped (non-prelim): 4315
length of query: 303
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 162
effective length of database: 9,050,888,538
effective search space: 1466243943156
effective search space used: 1466243943156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)