BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022046
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2NUD2|CDD_SODGM Cytidine deaminase OS=Sodalis glossinidius (strain morsitans)
GN=cdd PE=3 SV=1
Length = 309
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 150/276 (54%), Gaps = 11/276 (3%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ A + + + Q GL L TL+ A A P+S F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSAPQVKELMQAGGLDEDALCFTLLPLAAAYAVTPLSHFNVGAIACGISGNLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PL Q++HAEQ I + L E RL+ L V+ PCGHCRQF+ EL + +D+ IC+
Sbjct: 93 LAAPLQQTVHAEQSAIAHAWLRGEKRLRALTVNYTPCGHCRQFMNELNSGTDLIICLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER L+ LPD FGP DL + + L H + L + + + + L
Sbjct: 151 ---ERSAATLASYLPDAFGPRDLAIQSLLLDEIDHAFAAAAWLDHDLSAPSPDDNDPLVS 207
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
AL+AA++SHAPYS+ SGVA+ +G +Y G Y E+AA+NPSL P+Q AL+ AAG
Sbjct: 208 TALDAASRSHAPYSQSHSGVALQTQDGCVYAGRYAENAAFNPSLPPLQTALILMNAAGAD 267
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+I A L E+++A + Q A L +
Sbjct: 268 D------RQIRRAVLAERQNAPITQWPATNATLAAL 297
>sp|B4ESY3|CDD_PROMH Cytidine deaminase OS=Proteus mirabilis (strain HI4320) GN=cdd PE=3
SV=1
Length = 294
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 136/242 (56%), Gaps = 24/242 (9%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F+VGA+ G SG + G N+EF G PL Q++HAEQ +T+ L E RL + V+
Sbjct: 67 PISHFNVGAIARGESGHFYFGANMEFAGAPLQQTVHAEQSAVTHAWLRGESRLVAITVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLET 161
PCGHCRQF+ EL + + I I + RK L LPD FGP DL LL++
Sbjct: 127 TPCGHCRQFMNELNSGTHIAIHLPG-----RKVATLGDYLPDSFGPKDL--NITTLLMDK 179
Query: 162 HQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
+G QI T +L AL+A N+SHAPYS SG+A+ G I++GSY
Sbjct: 180 VNHGY-------QIDNT----SQLAQQALQAINRSHAPYSHSHSGIAVQMKSGKIFQGSY 228
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NPS+ P+QAAL+A AG + I +A L+EK D+++ Q A + L
Sbjct: 229 AENAAFNPSMPPLQAALIALNMAGEN------VMDIESAILIEKADSLLTQWDATQATLT 282
Query: 282 VI 283
+
Sbjct: 283 AL 284
>sp|Q6D3B4|CDD_ERWCT Cytidine deaminase OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=cdd PE=3 SV=1
Length = 296
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 155/283 (54%), Gaps = 28/283 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+++P F ++ A E ++ + S L V L L+ A A+ IS F VGA+ G SG
Sbjct: 24 IDKPDFAAMLTADEVNAVCEASQLDVDALAFALLPLAAACAQASISNFQVGAIAQGLSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ G N+EF + L Q++HAEQ +++ L E L+ + V+ PCGHCRQF+ ELRN +
Sbjct: 84 FYFGANMEFTAVQLQQTVHAEQSAVSHAWLRNERGLRAVTVNYTPCGHCRQFMNELRNAA 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPE 177
+ I + R+ LSH LPD FGP DL +D LL++ +G + N
Sbjct: 144 SLRIQLPG-----RQPAVLSHYLPDAFGPVDLQIDT---LLMDDINHGATLQNVNA---- 191
Query: 178 TENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAA 237
L AL+AAN+SHAPYSK SG+A+ GNIY G Y E+AA+NPSL P+QAA
Sbjct: 192 -------LTRQALDAANRSHAPYSKAISGIALETASGNIYTGRYAENAAFNPSLPPLQAA 244
Query: 238 LVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
L AG I AA+VE+ +AVV ++++L
Sbjct: 245 LNLMNLAGEDPS------TIKYAAVVERRNAVVSHWAISQIML 281
>sp|A6TBN1|CDD_KLEP7 Cytidine deaminase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=cdd PE=3 SV=1
Length = 294
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ +GL L L+ A ARP +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQHATGLDEDALAFALLPLAAACARPDLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDEQDHGFPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>sp|B2VIF3|CDD_ERWT9 Cytidine deaminase OS=Erwinia tasmaniensis (strain DSM 17950 /
Et1/99) GN=cdd PE=3 SV=1
Length = 296
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 21/232 (9%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I A +A+ + Q+ GL +L TL+ A A P+S F+VGAV G SG ++ G N+EF
Sbjct: 33 ISAQQADGVKQQCGLDDSELAFTLLPLAAACAVAPLSDFNVGAVARGKSGTLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G + Q++HAEQ +T+ L E L + V+ PCGHCRQF+ EL + +D+ I +
Sbjct: 93 VGATMQQTVHAEQSAVTHAWLRGESGLAGITVNYTPCGHCRQFMNELNSGTDLTIELPG- 151
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPK-ERLK 186
R L H LPD FGP DL LL++ +G++ P+ ++L+
Sbjct: 152 ----RAAATLGHYLPDSFGPRDL--AITTLLMDEVDHGIA-------------PRGDKLE 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
AAL AAN+SHAPYS SGVA+ G IY G Y E+AA+NPSL P+Q AL
Sbjct: 193 QAALAAANQSHAPYSGACSGVALQTRSGAIYAGRYAENAAFNPSLPPLQGAL 244
>sp|Q7N6K3|CDD_PHOLL Cytidine deaminase OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=cdd PE=3 SV=1
Length = 294
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 158/287 (55%), Gaps = 25/287 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A +A+S+ + G L L+ A + PIS F+VGA+ G SG ++ G N+E
Sbjct: 32 MLTAEQAKSIKKACGFDDNTLAVALLPLAAASSLTPISHFNVGAIARGESGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ IT+ L E RL + V+ +PCGHCRQF+ EL + + + I +
Sbjct: 92 FAGVPLQQTIHAEQCAITHAWLLGEKRLASVTVNYSPCGHCRQFMNELNSGTQLEIHLPK 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
S+ L H LPD FGPNDL LL++ +G ET ++L
Sbjct: 152 QASST-----LDHYLPDSFGPNDL--GITTLLMDPVNHGYKL--------ET---TDKLV 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AL+AAN+S+APYS SG A++ +G IY G Y E+AA+NPSL P+QAAL+
Sbjct: 194 LTALDAANQSYAPYSNSYSGTALLGKDGIIYPGRYAENAAFNPSLPPLQAALI---LMNI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVF 292
SGG ER A LVE + + + Q A + +L + K ++ F
Sbjct: 251 SGGDCLAIER---AVLVEGKHSDLSQRSATQSILAALGCSKFDYYTF 294
>sp|A8GC32|CDD_SERP5 Cytidine deaminase OS=Serratia proteamaculans (strain 568) GN=cdd
PE=3 SV=1
Length = 294
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 154/285 (54%), Gaps = 26/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
++ P F +++A + +++ Q+ GL L L+ A + PIS+F+VGA+ G SG
Sbjct: 24 IDAPDFPAMLKAEQVDAITQRCGLDDDALAFALLPLAAACSLAPISQFYVGAIARGQSGN 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
++ G N+EF G P+ Q+IHAEQ +T+ L EP L + V+ PCGHCRQF+ EL +
Sbjct: 84 LYFGANMEFSGAPMQQTIHAEQCAVTHAWLRGEPALASITVNYTPCGHCRQFMNELNSGV 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ L LPD FGP DL LL++ +G L
Sbjct: 144 SLKIRLPG-----REPATLGDYLPDSFGPKDL--DITTLLMDQVDHGFQLAL-------- 188
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L+ AAL AAN+SHAPYS SGVA+ +G +Y G Y E+AA+NPSL P+QAAL
Sbjct: 189 ---TDELEKAALAAANQSHAPYSNAHSGVALEAEDGTVYTGRYAENAAFNPSLPPLQAAL 245
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
+ +G +++ A L E E A++ Q A R L +
Sbjct: 246 ILMNVSGDD------CQKVKRAVLAEPESAILTQWDATRATLAAL 284
>sp|B5XP65|CDD_KLEP3 Cytidine deaminase OS=Klebsiella pneumoniae (strain 342) GN=cdd
PE=3 SV=1
Length = 294
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 27/285 (9%)
Query: 1 MERPRF--VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR 58
+ P F ++EA + ++ Q +GL L L+ A AR +S F+VGA+ G SGR
Sbjct: 24 LADPHFPALLEADQVATLQQATGLDEDALAFALLPLAAACARADLSHFNVGAIARGVSGR 83
Query: 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTS 118
+ GGN+EF G + Q++HAEQ I++ L E L+ + V+ PCGHCRQF+ EL +
Sbjct: 84 WYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETSLRAITVNYTPCGHCRQFMNELNSGL 143
Query: 119 DINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPET 178
+ I + R+ H L H LPD FGP DL K LL++ +G +
Sbjct: 144 ALRIHLPG-----REAHALEHYLPDAFGPKDLEIK--TLLMDAQDHGFPVS--------- 187
Query: 179 ENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238
+ L AA++AAN+ HAPYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL
Sbjct: 188 ---GDALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLPPLQGAL 244
Query: 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G Y I A L EK DA + Q A L+ +
Sbjct: 245 NLL------SLNGYDYPAIQRAILAEKADAALIQWDATVATLKAL 283
>sp|Q7MK48|CDD_VIBVY Cytidine deaminase OS=Vibrio vulnificus (strain YJ016) GN=cdd PE=3
SV=2
Length = 295
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 24/280 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ + + + +++G+T QL L+ A + PIS+F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSTVQFDELLKQTGMTDNQLRVALLPFAAAYSYAPISEFYVGAIVRGLSGTLYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G+ L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL + ++ I +
Sbjct: 93 DGVQLGQTVHAEQSAISHAWMKGEQGLSDITINFSPCGHCRQFMNELSSAKELKIQLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER+ L LPD FGP+D L + L+ + H +G + TE+ + L
Sbjct: 151 ---EREEKKLHDYLPDSFGPSD-LGIESALMSQVH-HGFA----------TED-DDALMQ 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EA N+SHAPY+ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 195 RAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLAGER 254
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + L+ ++P
Sbjct: 255 ------FENIQSAALVESHKGKISHLACTQSTLEALNPDI 288
>sp|Q8DA31|CDD_VIBVU Cytidine deaminase OS=Vibrio vulnificus (strain CMCP6) GN=cdd PE=3
SV=2
Length = 295
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 24/280 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
+ + + + +++G+T QL L+ A + PIS+F+VGA+ G SG ++ G N+EF
Sbjct: 33 LSTVQFDELLKQTGMTDNQLRVALLPFAAAYSYAPISEFYVGAIVRGLSGALYFGANMEF 92
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
G+ L Q++HAEQ I++ + E L + ++ +PCGHCRQF+ EL + ++ I +
Sbjct: 93 DGVQLGQTVHAEQSAISHAWMKGEQGLSDITINFSPCGHCRQFMNELSSAKELKIQLP-- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
ER+ L LPD FGP+D L + L+ + H +G + TE+ + L
Sbjct: 151 ---EREEKKLHDYLPDSFGPSD-LGIESALMSQVH-HGFA----------TED-DDALMQ 194
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A+EA N+SHAPY+ SGVA+ G +Y G+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 195 RAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLAGER 254
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+E I +AALVE + + L+ ++P
Sbjct: 255 ------FENIQSAALVESHKGKISHLACTQSTLEALNPDI 288
>sp|C5BCM4|CDD_EDWI9 Cytidine deaminase OS=Edwardsiella ictaluri (strain 93-146) GN=cdd
PE=3 SV=1
Length = 295
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 145/277 (52%), Gaps = 23/277 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
VI AA+ +++ L L L+ A A PIS F VGA+ G+SG ++ G N+E
Sbjct: 32 VITAAQVDAIGHACHLDRQALSFALLPLAAAYALTPISHFQVGAIVHGASGNLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G PL Q+IHAEQ IT+ L E L + V+ PCGHCRQF+ EL + + + I +
Sbjct: 92 FSGTPLQQTIHAEQCAITHAWLRGETALASITVNCTPCGHCRQFMNELNSGTSLPIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL K + LL TH M N + + L+
Sbjct: 152 -----RHTATLGDYLPDAFGPRDLQIKTL-LLDPTHHGLMLDNAAS----------DPLQ 195
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL+AAN SHAPYS+ SGVA+ + +Y G Y E+AA+NPSL P+QAAL+
Sbjct: 196 QAALDAANASHAPYSQAYSGVAV-ETPRAVYAGRYAENAAFNPSLPPLQAALIL------ 248
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
G I AALVE A + Q A R LQ +
Sbjct: 249 PNMSGDNVNAIRRAALVESRQAPLSQYAATRATLQAL 285
>sp|B1JPZ5|CDD_YERPY Cytidine deaminase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=cdd PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|A4TKN7|CDD_YERPP Cytidine deaminase OS=Yersinia pestis (strain Pestoides F) GN=cdd
PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|Q1CGT5|CDD_YERPN Cytidine deaminase OS=Yersinia pestis bv. Antiqua (strain Nepal516)
GN=cdd PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|A9R1B9|CDD_YERPG Cytidine deaminase OS=Yersinia pestis bv. Antiqua (strain Angola)
GN=cdd PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|Q8ZG08|CDD_YERPE Cytidine deaminase OS=Yersinia pestis GN=cdd PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|Q1C9U7|CDD_YERPA Cytidine deaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua)
GN=cdd PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|A7FJK3|CDD_YERP3 Cytidine deaminase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=cdd PE=3 SV=1
Length = 294
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL + S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNSGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|Q6LRI0|CDD_PHOPR Cytidine deaminase OS=Photobacterium profundum GN=cdd PE=3 SV=1
Length = 295
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 143/274 (52%), Gaps = 28/274 (10%)
Query: 15 SMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQ 74
++ + +T +L L+ A + PISKF VGA+ G SGR++ G N+EF G L Q
Sbjct: 40 TLLSTTHMTDSELRVALLPIAAAYSVAPISKFFVGAIVRGESGRLYFGANMEFVGASLSQ 99
Query: 75 SIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKY 134
+IHAEQ I++ + E + + ++ +PCGHCRQF+ EL + + + ER+
Sbjct: 100 TIHAEQSAISHAWIKGETGITDITINYSPCGHCRQFMNELTTAKTLIVQLP-----EREE 154
Query: 135 HPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAAL--EA 192
L LP+ FGP DL D LL +GM+ KE ++ A+ +A
Sbjct: 155 QTLQQYLPESFGPADLNITDA--LLGKIDHGMTI-------------KETDEFVAIACKA 199
Query: 193 ANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGG 252
AN SHAPY+K SGVA+ +G ++ G Y E+AA+NPSL P+Q ALV G
Sbjct: 200 ANGSHAPYTKNYSGVALKATDGKVFTGKYAENAAFNPSLPPLQVALV------NMNMAGY 253
Query: 253 GYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286
I AALVEK D+ + + L+ ++P
Sbjct: 254 ALTEIAEAALVEKADSTISHLSDTQTTLEALNPD 287
>sp|Q083S7|CDD_SHEFN Cytidine deaminase OS=Shewanella frigidimarina (strain NCIMB 400)
GN=cdd PE=3 SV=1
Length = 298
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 24/278 (8%)
Query: 8 IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF 67
I+A++ + + SG T Q+L L+ A LA PPIS+F+VGA+ GSSG +++G N+E
Sbjct: 32 IDASQFAGLVKASGKTEQQVLMDLLPIAAALANPPISEFYVGAIAKGSSGDLYMGANLEL 91
Query: 68 PGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSI 127
PG L S+HAEQ I++ L+ E + + V+ +PCGHCRQF+ EL N S INI + +
Sbjct: 92 PGEALFHSVHAEQSAISHAWLSGETEIVDIIVNFSPCGHCRQFMNELVNGSKINIHLPN- 150
Query: 128 NSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKY 187
++ L+H LP FGP+D LD VPLL + Q FN C+ P +
Sbjct: 151 ----QETQTLAHYLPYAFGPSD-LDVTVPLLCKREQ---EFN-CDSDDP--------MII 193
Query: 188 AALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGS 247
A++ S+APY+ + V + +G + G Y ESAA+NPS+ P+Q AL +
Sbjct: 194 EAIDQMGLSYAPYTNNNAAVVLETNDGATFCGRYAESAAFNPSMQPMQMALSNLIR---- 249
Query: 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285
Y I A LVE + AA L I+P
Sbjct: 250 --NNRQYSEIKRAVLVESSVGKITLVGAAMDALHAIAP 285
>sp|Q66C79|CDD_YERPS Cytidine deaminase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=cdd PE=3 SV=1
Length = 294
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 143/266 (53%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNCGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|B2JZJ6|CDD_YERPB Cytidine deaminase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=cdd PE=3 SV=1
Length = 294
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 143/266 (53%), Gaps = 24/266 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + +++ SGL L L+ A A PIS F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVKTVKNISGLDDDALAFALLPLATACALTPISHFNVGAIARGKSGNFYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+PL Q+IHAEQ +T+ L E L + V+ PCGHCRQF+ EL S+++I +
Sbjct: 92 FRGVPLQQTIHAEQCAVTHAWLRGETNLVAITVNYTPCGHCRQFMNELNCGSELHIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R L LPD FGP DL LL++ +G + + ET + L
Sbjct: 152 -----RPPSTLGQYLPDSFGPTDL--AITTLLMDPVNHGYT-------LAET----DPLT 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AAL AAN SHAPYS+ SGVA+ G IY G Y E+AA+NPSL P+QAAL+ A
Sbjct: 194 QAALNAANHSHAPYSQSHSGVALETTNGKIYAGRYAENAAFNPSLPPLQAALI---LANI 250
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQ 272
+G R A LVE +AV Q
Sbjct: 251 TGENCASIRR---AVLVEGHNAVTSQ 273
>sp|B5FMZ9|CDD_SALDC Cytidine deaminase OS=Salmonella dublin (strain CT_02021853) GN=cdd
PE=3 SV=1
Length = 294
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 144/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A T AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAATCARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|C6DDS7|CDD_PECCP Cytidine deaminase OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=cdd PE=3 SV=1
Length = 296
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 131/240 (54%), Gaps = 26/240 (10%)
Query: 42 PISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101
PIS F VGA+ G SG + G N+EF + L Q++HAEQ +++ + E L+ + V+
Sbjct: 67 PISNFQVGAIAQGLSGNFYFGANMEFSAVQLQQTVHAEQSAVSHAWMRNERGLRAVTVNY 126
Query: 102 APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLE 160
PCGHCRQF+ ELR+ + + I + R+ LSH LPD FGP DL +D LL++
Sbjct: 127 TPCGHCRQFMNELRDAASLRIQLPG-----RQPATLSHYLPDSFGPVDLQIDT---LLMD 178
Query: 161 THQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGS 220
+G + N L AL+AAN+SHAPYSK SG+ + GN Y G
Sbjct: 179 DINHGATLQNMNA-----------LARQALDAANRSHAPYSKAISGIVLETSSGNTYTGR 227
Query: 221 YMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280
Y E+AA+NPSL P+Q AL AG + A +VE+ +AVV ++++L
Sbjct: 228 YAENAAFNPSLPPLQTALNLMNLAGED------LSTVKHAVVVERRNAVVSHWAISQIML 281
>sp|B1IYC6|CDD_ECOLC Cytidine deaminase OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=cdd PE=3 SV=1
Length = 294
Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL ++ D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSSLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILL------NLKGYDYPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|C3LLS7|CDD_VIBCM Cytidine deaminase OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=cdd PE=3 SV=1
Length = 295
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>sp|Q9KSM5|CDD_VIBCH Cytidine deaminase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cdd PE=1 SV=1
Length = 295
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SGL L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>sp|B7NMA8|CDD_ECO7I Cytidine deaminase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC)
GN=cdd PE=3 SV=1
Length = 294
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L+ + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALEAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|Q9CP11|CDD_PASMU Cytidine deaminase OS=Pasteurella multocida (strain Pm70) GN=cdd
PE=3 SV=1
Length = 294
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 31/287 (10%)
Query: 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGG 63
P F +E + K LT QL L+ A + PIS+FHVGA+ +G G + G
Sbjct: 35 PYFTVE-----HLCTKHQLTPQQLALKLLPIAAAYSLAPISQFHVGAIAIGQRGAYYFGA 89
Query: 64 NVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINIC 123
N+EF + Q++HAEQ I++ +N E + + V+ PCGHCRQF+ EL+ + I
Sbjct: 90 NLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVNYTPCGHCRQFMNELKTAPQLKIH 149
Query: 124 ITSINSNERKYHPLSHLLPDRFGPNDLLDKDVP-LLLETHQNGMSFNLCNGQIPETENPK 182
+ +N L LPD FGP DL D+ LL+ N +++ ET++P
Sbjct: 150 LPHSQNN-----LLHSYLPDAFGPADL---DIQHFLLDAQNNQLTY--------ETQDP- 192
Query: 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242
+ ALE AN +HAPYSK G+AI + IY+GSY E+AA+NPSL +Q AL L
Sbjct: 193 --VMLTALECANAAHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLL 250
Query: 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEF 289
SG +RIV ++EK + + + A L+ ++ ++
Sbjct: 251 L---SGDTLQNIQRIV---MIEKANHLCYRHMAEDLVANLVDIPLDY 291
>sp|Q87Q52|CDD_VIBPA Cytidine deaminase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=cdd PE=3 SV=1
Length = 295
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
+ A + E + + L+ +L L+ A + PIS+F+VGA+ G SGR++ G N+E
Sbjct: 32 TLSAQQFEQLLSATSLSDKELRVALLPFAAAYSYAPISEFYVGAIVRGLSGRLYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G+ L Q++HAEQ I++ + E ++ + ++ +PCGHCRQF+ EL ++ + +
Sbjct: 92 FFGVQLGQTVHAEQSAISHAWMKGEHGVKDITINFSPCGHCRQFMNELSTAKELKVQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
ER L LP+ FGP DL + + HQ +C+ K+ L
Sbjct: 151 ----ERDEKSLHEYLPEAFGPADLGIESGLMAEVKHQ-----FVCDD--------KDALI 193
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
A+EA N SHAPY+ SG+A+ G ++KG+Y E+AA+NPSL P+Q AL+ L AG
Sbjct: 194 QQAVEAMNMSHAPYTNNLSGLALELANGRVFKGAYAENAAFNPSLPPLQVALIQVLLAGE 253
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
+ ++ I AAALVE + + + L+ ++P
Sbjct: 254 T------FDSIKAAALVENSEGKISHLADTQSTLEALNPDI 288
>sp|A4WCI1|CDD_ENT38 Cytidine deaminase OS=Enterobacter sp. (strain 638) GN=cdd PE=3
SV=1
Length = 294
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 132/242 (54%), Gaps = 27/242 (11%)
Query: 43 ISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAA 102
+S F+VGA+ G SG + GGN+EF G + Q++HAEQ I++ L E L + V+
Sbjct: 68 LSHFNVGAIARGVSGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEHALNAITVNYT 127
Query: 103 PCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162
PCGHCRQF+ EL + ++ IN R+ H L LPD FGP DL D+ LL
Sbjct: 128 PCGHCRQFMNELNSGLELR-----INLPGREPHTLGDYLPDAFGPKDL---DIKTLLMDE 179
Query: 163 QN-GMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSY 221
QN G + + L +A+ AANKSHAPYS+ PSGVA+ +G I+ GSY
Sbjct: 180 QNHGYALT------------GDELTQSAIAAANKSHAPYSQSPSGVALECRDGRIFSGSY 227
Query: 222 MESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQ 281
E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A L+
Sbjct: 228 AENAAFNPTLPPLQGAL-NLLSLNGY-----DYPDIQRAILAEKADAPLIQWDATAATLK 281
Query: 282 VI 283
+
Sbjct: 282 AL 283
>sp|B4TNP0|CDD_SALSV Cytidine deaminase OS=Salmonella schwarzengrund (strain CVM19633)
GN=cdd PE=3 SV=1
Length = 294
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGTTMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|A5F1V7|CDD_VIBC3 Cytidine deaminase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=cdd PE=3 SV=1
Length = 295
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
A + + + SG+ L L+ A + PIS+F+VGA+ G SGR++LG N+E
Sbjct: 32 TFSAEQYQQLLTLSGMEDSDLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G L Q++HAEQ I++ + E + + ++ +PCGHCRQF+ EL S + I +
Sbjct: 92 FTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLP- 150
Query: 127 INSNERKYHPLSHLLPDRFGPNDL-LDKDVPLLLETHQNGMSFNLCNGQIPETENPKERL 185
+R L LP+ FGP DL +D +G+ + +G+ T + E L
Sbjct: 151 ----KRAAKTLQEYLPESFGPADLGID-----------SGLMSPVNHGK---TSDDDEEL 192
Query: 186 KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAG 245
AL A N SH+PY++ SGVA+ G IY G+Y E+AA+NPSL P+Q AL + G
Sbjct: 193 IQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMG 252
Query: 246 GSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKC 287
S +E I AAALVE + + L+VI+P
Sbjct: 253 ES------FEDIEAAALVESATGKISHLADTQATLEVINPDI 288
>sp|B5EYN3|CDD_SALA4 Cytidine deaminase OS=Salmonella agona (strain SL483) GN=cdd PE=3
SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----NYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|Q57MF5|CDD_SALCH Cytidine deaminase OS=Salmonella choleraesuis (strain SC-B67)
GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|Q8ZNM0|CDD_SALTY Cytidine deaminase OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|C0Q0V4|CDD_SALPC Cytidine deaminase OS=Salmonella paratyphi C (strain RKS4594)
GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|A9N6L3|CDD_SALPB Cytidine deaminase OS=Salmonella paratyphi B (strain ATCC BAA-1250
/ SPB7) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|B4SY15|CDD_SALNS Cytidine deaminase OS=Salmonella newport (strain SL254) GN=cdd PE=3
SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|B4TAK5|CDD_SALHS Cytidine deaminase OS=Salmonella heidelberg (strain SL476) GN=cdd
PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|B5RC22|CDD_SALG2 Cytidine deaminase OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|B5R153|CDD_SALEP Cytidine deaminase OS=Salmonella enteritidis PT4 (strain P125109)
GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 7 VIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVE 66
++ A + ++ +GL L L+ A AR +S F+VGA+ G SG + G N+E
Sbjct: 32 MLTAEQVSTLKNTAGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANME 91
Query: 67 FPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITS 126
F G + Q++HAEQ I++ L E L + V+ PCGHCRQF+ EL + D+ I +
Sbjct: 92 FLGATMQQTVHAEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPG 151
Query: 127 INSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLK 186
R H L LPD FGP DL K LL++ +G + + L
Sbjct: 152 -----RAPHTLRDYLPDAFGPKDLEIK--TLLMDEQDHGFTLT------------GDTLT 192
Query: 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGG 246
AA+ AANKSH PYS PSGVA+ +G I+ GSY E+AA+NP+L P+Q AL L+ G
Sbjct: 193 QAAITAANKSHMPYSHSPSGVALECKDGRIFTGSYAENAAFNPTLPPLQGAL-NLLSLNG 251
Query: 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVI 283
Y I A L EK DA + Q A L+ +
Sbjct: 252 Y-----DYADIQRAILAEKGDAALIQWDATAATLKAL 283
>sp|B5BE52|CDD_SALPK Cytidine deaminase OS=Salmonella paratyphi A (strain AKU_12601)
GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|Q5PE68|CDD_SALPA Cytidine deaminase OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 129/244 (52%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R +S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L E L + V
Sbjct: 65 RTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVHAEQSAISHAWLRGEKGLAAVTV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----RAPHTLRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AANKSH PYS PSGVA+ +G I+ G
Sbjct: 178 DEQDHGFTLT------------GDTLTQAAITAANKSHMPYSHSPSGVALECKDGRIFTG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL L+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGAL-NLLSLNGY-----DYADIQRAILAEKGDAALIQWDATAAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|Q1R9T0|CDD_ECOUT Cytidine deaminase OS=Escherichia coli (strain UTI89 / UPEC) GN=cdd
PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|B7NCH2|CDD_ECOLU Cytidine deaminase OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|Q8FFV3|CDD_ECOL6 Cytidine deaminase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|Q0TFU8|CDD_ECOL5 Cytidine deaminase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|A1AD04|CDD_ECOK1 Cytidine deaminase OS=Escherichia coli O1:K1 / APEC GN=cdd PE=3
SV=1
Length = 294
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
>sp|B7MXF5|CDD_ECO81 Cytidine deaminase OS=Escherichia coli O81 (strain ED1a) GN=cdd
PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 40 RPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99
R P+S F+VGA+ G SG + G N+EF G + Q++HAEQ I++ L+ E L + V
Sbjct: 65 RTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITV 124
Query: 100 SAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLL 159
+ PCGHCRQF+ EL + D+ I + R+ H L LPD FGP DL K LL+
Sbjct: 125 NYTPCGHCRQFMNELNSGLDLRIHLPG-----REAHALRDYLPDAFGPKDLEIK--TLLM 177
Query: 160 ETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG 219
+ +G + + L AA+ AAN+SH PYSK PSGVA+ +G I+ G
Sbjct: 178 DEQDHGYALT------------GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSG 225
Query: 220 SYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279
SY E+AA+NP+L P+Q AL+ G Y I A L EK DA + Q A
Sbjct: 226 SYAENAAFNPTLPPLQGALILLNLKGYD------YPDIQRAVLAEKADAPLIQWDATSAT 279
Query: 280 LQVI 283
L+ +
Sbjct: 280 LKAL 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,827,454
Number of Sequences: 539616
Number of extensions: 4991344
Number of successful extensions: 22511
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 22053
Number of HSP's gapped (non-prelim): 208
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)