Query 022046
Match_columns 303
No_of_seqs 218 out of 2117
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01355 cyt_deam_dimer cytid 100.0 6.8E-78 1.5E-82 561.9 32.6 282 4-294 1-282 (283)
2 PLN02402 cytidine deaminase 100.0 2E-76 4.3E-81 554.6 32.6 289 1-295 1-301 (303)
3 PRK09027 cytidine deaminase; P 100.0 1.9E-76 4.2E-81 555.3 31.4 260 3-286 28-287 (295)
4 PLN02182 cytidine deaminase 100.0 5.9E-65 1.3E-69 481.8 29.3 275 4-295 28-311 (339)
5 COG0295 Cdd Cytidine deaminase 100.0 1.3E-42 2.9E-47 292.1 14.4 121 27-151 7-133 (134)
6 PRK05578 cytidine deaminase; V 100.0 1.1E-40 2.3E-45 281.2 14.5 122 26-151 4-131 (131)
7 PRK12411 cytidine deaminase; P 100.0 1.7E-40 3.7E-45 280.2 14.6 122 26-151 4-131 (132)
8 KOG0833 Cytidine deaminase [Nu 100.0 9.7E-39 2.1E-43 276.6 14.7 165 2-217 2-173 (173)
9 PRK08298 cytidine deaminase; V 100.0 1.2E-38 2.5E-43 270.2 13.4 120 22-147 1-131 (136)
10 PRK06848 hypothetical protein; 100.0 2E-38 4.4E-43 269.8 14.6 119 24-149 6-138 (139)
11 TIGR01354 cyt_deam_tetra cytid 100.0 2E-36 4.3E-41 253.8 14.9 121 26-150 1-127 (127)
12 COG0295 Cdd Cytidine deaminase 100.0 1.3E-35 2.9E-40 249.7 14.3 109 183-299 6-115 (134)
13 PRK05578 cytidine deaminase; V 100.0 1.6E-34 3.5E-39 243.6 15.3 110 182-299 3-113 (131)
14 PRK12411 cytidine deaminase; P 100.0 6.9E-34 1.5E-38 240.0 15.2 109 183-299 4-113 (132)
15 PRK08298 cytidine deaminase; V 100.0 6.8E-34 1.5E-38 241.0 14.1 106 181-296 3-112 (136)
16 PRK06848 hypothetical protein; 100.0 1.1E-31 2.3E-36 228.5 15.0 105 183-296 8-120 (139)
17 TIGR01354 cyt_deam_tetra cytid 100.0 3.1E-31 6.7E-36 222.3 14.5 108 184-299 2-110 (127)
18 PF08211 dCMP_cyt_deam_2: Cyti 100.0 6.3E-30 1.4E-34 212.8 10.4 123 137-278 1-123 (124)
19 TIGR01355 cyt_deam_dimer cytid 100.0 1E-28 2.3E-33 231.2 13.9 102 183-298 23-128 (283)
20 KOG0833 Cytidine deaminase [Nu 100.0 5.2E-28 1.1E-32 209.8 13.5 105 183-295 22-127 (173)
21 PLN02182 cytidine deaminase 99.9 3.3E-27 7.1E-32 224.6 14.2 106 185-298 48-159 (339)
22 PLN02402 cytidine deaminase 99.9 3.3E-27 7.2E-32 222.3 13.9 101 183-297 26-130 (303)
23 PRK09027 cytidine deaminase; P 99.9 2.7E-26 5.8E-31 216.2 13.0 99 23-124 187-293 (295)
24 cd01283 cytidine_deaminase Cyt 99.9 2.2E-21 4.8E-26 158.4 14.0 103 187-297 2-105 (112)
25 cd01283 cytidine_deaminase Cyt 99.9 2.9E-21 6.3E-26 157.7 13.8 99 30-131 2-106 (112)
26 PF08211 dCMP_cyt_deam_2: Cyti 99.6 8.9E-16 1.9E-20 128.1 8.9 87 19-107 27-115 (124)
27 cd00786 cytidine_deaminase-lik 99.5 1.5E-13 3.2E-18 109.6 11.2 84 30-115 2-87 (96)
28 cd00786 cytidine_deaminase-lik 99.4 1.8E-12 4E-17 103.3 11.8 86 187-286 2-89 (96)
29 PF00383 dCMP_cyt_deam_1: Cyti 99.4 2.5E-12 5.4E-17 102.4 11.1 91 22-115 1-94 (102)
30 PF00383 dCMP_cyt_deam_1: Cyti 99.1 3.2E-10 6.8E-15 90.2 8.7 89 183-285 5-95 (102)
31 PF14421 LmjF365940-deam: A di 98.7 9.5E-08 2.1E-12 84.3 8.7 83 44-128 35-182 (193)
32 cd01286 deoxycytidylate_deamin 98.5 1.3E-06 2.8E-11 73.7 10.2 86 26-115 2-109 (131)
33 cd01286 deoxycytidylate_deamin 98.3 9.3E-06 2E-10 68.5 11.7 86 184-284 3-109 (131)
34 cd01285 nucleoside_deaminase N 98.3 7.7E-06 1.7E-10 66.5 10.4 74 201-285 15-89 (109)
35 cd01285 nucleoside_deaminase N 98.3 1.4E-05 3.1E-10 64.9 11.2 70 44-115 15-88 (109)
36 PF14421 LmjF365940-deam: A di 98.2 9.8E-06 2.1E-10 71.7 9.7 97 199-295 33-182 (193)
37 PHA02588 cd deoxycytidylate de 98.0 4.1E-05 8.9E-10 67.4 10.1 88 25-115 3-122 (168)
38 TIGR02571 ComEB ComE operon pr 97.8 0.00017 3.8E-09 62.4 10.6 90 23-115 4-108 (151)
39 PHA02588 cd deoxycytidylate de 97.6 0.0009 2E-08 58.9 11.8 87 183-285 4-123 (168)
40 TIGR02571 ComEB ComE operon pr 97.5 0.0011 2.3E-08 57.5 11.1 85 184-284 8-108 (151)
41 PRK10860 tRNA-specific adenosi 97.2 0.005 1.1E-07 54.4 11.1 87 25-115 13-103 (172)
42 cd01284 Riboflavin_deaminase-r 97.2 0.0056 1.2E-07 50.7 10.7 65 44-115 17-88 (115)
43 PRK10860 tRNA-specific adenosi 97.1 0.0096 2.1E-07 52.7 11.6 89 183-284 14-103 (172)
44 cd01284 Riboflavin_deaminase-r 97.0 0.0077 1.7E-07 49.8 9.9 79 187-285 2-89 (115)
45 COG0590 CumB Cytosine/adenosin 96.8 0.02 4.4E-07 49.5 11.5 97 183-291 9-106 (152)
46 COG0590 CumB Cytosine/adenosin 96.7 0.0072 1.6E-07 52.3 7.5 90 23-115 6-99 (152)
47 COG2131 ComEB Deoxycytidylate 96.6 0.014 3E-07 51.4 8.8 89 24-115 8-118 (164)
48 PF14431 YwqJ-deaminase: YwqJ- 96.3 0.018 3.8E-07 48.3 7.5 68 47-115 16-124 (125)
49 PF14431 YwqJ-deaminase: YwqJ- 96.2 0.03 6.5E-07 46.9 8.5 80 205-284 17-124 (125)
50 PLN02807 diaminohydroxyphospho 96.0 0.071 1.5E-06 52.7 11.5 83 24-115 31-121 (380)
51 KOG1018 Cytosine deaminase FCY 95.8 0.11 2.4E-06 46.0 10.3 98 183-294 12-114 (169)
52 COG2131 ComEB Deoxycytidylate 95.4 0.17 3.7E-06 44.5 10.2 95 181-293 7-125 (164)
53 TIGR00326 eubact_ribD riboflav 95.4 0.12 2.7E-06 50.0 10.3 76 31-115 3-86 (344)
54 PF14437 MafB19-deam: MafB19-l 95.3 0.091 2E-06 45.4 7.8 82 48-130 29-139 (146)
55 COG0117 RibD Pyrimidine deamin 95.0 0.3 6.4E-06 42.2 10.2 82 24-115 5-95 (146)
56 PRK10786 ribD bifunctional dia 94.8 0.35 7.6E-06 47.5 11.5 81 26-115 4-92 (367)
57 KOG3127 Deoxycytidylate deamin 94.1 0.2 4.4E-06 46.0 7.5 86 24-115 66-173 (230)
58 TIGR00326 eubact_ribD riboflav 93.6 0.39 8.4E-06 46.6 9.0 77 187-284 2-86 (344)
59 PLN02807 diaminohydroxyphospho 93.6 0.69 1.5E-05 45.8 10.7 81 183-284 33-121 (380)
60 PRK10786 ribD bifunctional dia 92.7 1 2.2E-05 44.3 10.3 81 183-284 4-92 (367)
61 KOG1018 Cytosine deaminase FCY 92.4 0.63 1.4E-05 41.2 7.8 86 27-115 13-106 (169)
62 COG0117 RibD Pyrimidine deamin 89.1 5.9 0.00013 34.4 10.3 97 183-297 7-107 (146)
63 KOG3127 Deoxycytidylate deamin 88.9 1.4 3E-05 40.7 6.7 84 184-284 69-173 (230)
64 PF14437 MafB19-deam: MafB19-l 88.0 3 6.5E-05 36.2 7.9 82 204-297 28-139 (146)
65 PF14424 Toxin-deaminase: The 77.6 9.5 0.00021 32.4 6.8 57 228-294 71-132 (133)
66 PF14424 Toxin-deaminase: The 72.9 10 0.00022 32.2 5.7 53 74-126 72-131 (133)
67 PF14427 Pput2613-deam: Pput_2 64.0 12 0.00026 31.1 4.2 77 52-129 15-103 (118)
68 PF01614 IclR: Bacterial trans 62.4 28 0.00061 28.0 6.3 62 7-68 27-102 (129)
69 PF14440 XOO_2897-deam: Xantho 56.6 7.1 0.00015 32.7 1.7 54 227-292 42-98 (118)
70 PF14440 XOO_2897-deam: Xantho 54.4 6.3 0.00014 33.0 1.1 50 74-125 44-98 (118)
71 PRK15090 DNA-binding transcrip 53.4 44 0.00094 30.7 6.6 64 6-69 150-227 (257)
72 PF14439 Bd3614-deam: Bd3614-l 52.7 1.2E+02 0.0026 25.7 8.3 74 204-284 9-98 (136)
73 cd04513 Glycosylasparaginase G 52.4 31 0.00066 32.8 5.4 62 3-64 94-156 (263)
74 PRK13663 hypothetical protein; 48.7 82 0.0018 32.1 8.0 64 12-89 326-390 (493)
75 PF14428 SCP1201-deam: SCP1.20 44.6 72 0.0016 27.1 6.1 55 74-129 67-126 (135)
76 PF14439 Bd3614-deam: Bd3614-l 42.3 66 0.0014 27.2 5.3 67 46-116 8-99 (136)
77 PF08903 DUF1846: Domain of un 41.7 98 0.0021 31.6 7.3 65 11-89 324-389 (491)
78 PF14441 OTT_1508_deam: OTT_15 39.3 41 0.00089 28.3 3.8 42 74-115 66-107 (142)
79 TIGR02431 pcaR_pcaU beta-ketoa 38.6 1E+02 0.0023 28.0 6.7 64 6-69 144-221 (248)
80 PRK11569 transcriptional repre 37.9 1.1E+02 0.0025 28.3 6.9 64 6-69 167-244 (274)
81 COG1414 IclR Transcriptional r 34.6 1.2E+02 0.0027 27.8 6.5 65 6-70 141-219 (246)
82 cd04703 Asparaginase_2_like A 33.6 84 0.0018 29.5 5.2 44 3-65 102-146 (246)
83 PF12244 DUF3606: Protein of u 31.9 68 0.0015 23.1 3.4 24 9-33 19-42 (57)
84 PRK10163 DNA-binding transcrip 31.6 1.6E+02 0.0034 27.4 6.8 62 7-69 163-239 (271)
85 PF11372 DUF3173: Domain of un 30.6 58 0.0013 24.0 2.9 32 20-51 12-46 (59)
86 PLN02689 Bifunctional isoaspar 29.9 1.2E+02 0.0026 29.6 5.7 63 3-65 116-206 (318)
87 PRK09732 hypothetical protein; 28.3 3.4E+02 0.0074 23.0 7.6 53 183-244 13-65 (134)
88 COG4868 Uncharacterized protei 24.6 2.1E+02 0.0045 28.5 6.2 50 13-68 327-377 (493)
89 TIGR01068 thioredoxin thioredo 24.2 99 0.0021 22.8 3.3 44 83-127 6-54 (101)
90 PF07494 Reg_prop: Two compone 23.7 1.4E+02 0.003 17.4 3.2 20 202-221 4-23 (24)
91 COG3019 Predicted metal-bindin 23.4 1.4E+02 0.003 26.0 4.3 26 101-127 33-58 (149)
92 PF14428 SCP1201-deam: SCP1.20 22.9 2.9E+02 0.0062 23.5 6.2 54 229-296 67-124 (135)
93 PF14432 DYW_deaminase: DYW fa 22.7 1.1E+02 0.0023 25.1 3.4 50 74-128 60-110 (116)
94 PRK11235 bifunctional antitoxi 21.4 2.2E+02 0.0047 22.2 4.7 44 1-44 1-47 (80)
95 cd02961 PDI_a_family Protein D 20.6 1.6E+02 0.0035 21.3 3.8 32 82-115 7-38 (101)
96 PRK10424 ilvG operon leader pe 20.5 95 0.0021 19.9 2.0 9 99-107 18-26 (32)
97 PRK10226 isoaspartyl peptidase 20.1 4.1E+02 0.0089 25.9 7.3 63 3-65 117-197 (313)
No 1
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=100.00 E-value=6.8e-78 Score=561.85 Aligned_cols=282 Identities=58% Similarity=0.935 Sum_probs=251.2
Q ss_pred CcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHH
Q 022046 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83 (303)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai 83 (303)
|+|+|+++++++|++++|++++++|+++|++++++||+|||+|+|||+++++||++|+|||||+++.++++|+||||+||
T Consensus 1 ~~~~~~a~~~~~l~~~~~~~~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai 80 (283)
T TIGR01355 1 PKFVFTAEQAQSLGHNFGVTDPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLI 80 (283)
T ss_pred CCeeeCHHHHHHHHHHhCCChHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999944444456999999999
Q ss_pred HHHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCCCccccccC
Q 022046 84 TNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQ 163 (303)
Q Consensus 84 ~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~p~l~~~~~ 163 (303)
++|+++|+++|++|+|+.+|||+|||+|+||.+.++++|++.+.++. +.++|+||||++|+|+||+.+..|+|++...
T Consensus 81 ~~Av~~Ge~~i~~Iav~~~PCG~CRQ~l~Ef~~~~~~~i~l~~~~~~--~~~~l~eLLP~~F~~~dL~~~~~~ll~~~~~ 158 (283)
T TIGR01355 81 SHLALNNERGLNDLAVSYAPCGHCRQFLNEIRNASSIKILLPDPHNN--RDMSLHSYLPDRFGPDDLLIKAAPLLLEERD 158 (283)
T ss_pred HHHHHcCCCceEEEEEEeCCcchhHHHHHHhcCCCCcEEEEEcCCCc--EEeeHHHhCcCcCChhhcCcccccccccccc
Confidence 99999999999999999999999999999997546899999888775 4799999999999999998887788887655
Q ss_pred CCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHH
Q 022046 164 NGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLA 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~ 243 (303)
+.+.+. ...+ ..+++|++|+++|++++++||+|||+|+||++++++||++|+|+|+||++|++|+||||+||++|++
T Consensus 159 ~~~~~~-~~~~--~~~~~~~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~~G~nvENAay~~slcaer~Ai~~~v~ 235 (283)
T TIGR01355 159 NCLALI-DIRD--GIDSEISHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVYRGWYIESAAFNPSLGPVQAALVDFMA 235 (283)
T ss_pred cceeec-cccc--cccchHHHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEEEEEEeecCCCCCcccHHHHHHHHHHH
Confidence 444321 1011 2346778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEeC
Q 022046 244 AGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294 (303)
Q Consensus 244 ~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~~ 294 (303)
++ |+++..+|+++++++..+..++|||+|||+|++|+|++++.++..
T Consensus 236 ~g----~g~~~~~i~~aVl~e~~~~~vs~~~~~r~~l~~~~p~~~l~~~~~ 282 (283)
T TIGR01355 236 NG----GGKGFEDIVRAVLVEKADAKVSHEATARTLLETIAPSCELKVFHC 282 (283)
T ss_pred hC----CCCChhheeEEEEEecCCCccChHHHHHHHHHHhCCCCceEEEEe
Confidence 82 234567899999999988889999999999999999988887754
No 2
>PLN02402 cytidine deaminase
Probab=100.00 E-value=2e-76 Score=554.61 Aligned_cols=289 Identities=74% Similarity=1.160 Sum_probs=260.7
Q ss_pred CCCCcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhH
Q 022046 1 MERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQ 80 (303)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr 80 (303)
|..|+|+|+++|+++|++++|++++++|..++++++++||+|||+|+|||+++++||++|+||||||++|++++|+||||
T Consensus 1 ~~~~~f~~~a~~~~~l~~~~g~~~~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~~GvNVEnasy~l~~tiCAEr 80 (303)
T PLN02402 1 MDGPIFVIEASEAESMAKQSGLTVLQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIFLGVNLEFPGLPLHHSVHAEQ 80 (303)
T ss_pred CCCCceEEcHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEEEEEeeecCCCCCCCcccHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCc----------eeeEecccccCCCCcCCCCC
Q 022046 81 FLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSN----------ERKYHPLSHLLPDRFGPNDL 150 (303)
Q Consensus 81 ~Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~----------~~~~~~l~eLLP~~f~~~~l 150 (303)
+||++|+++|+++|++|+|+.+|||+|||+|+||.+.++++|++++.++. ..+.++|+||||++|+|+||
T Consensus 81 ~Ai~~av~~G~~~i~~iaV~~sPCG~CRQ~l~Ef~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~l~eLLP~~Fgp~dL 160 (303)
T PLN02402 81 FLITNLTLNAEPHLKYVAVSAAPCGHCRQFFQEIRDAPDIKILITGDSNSNDSYKNSLADSQQFEPLSCLLPHRFGPDDL 160 (303)
T ss_pred HHHHHHHHcCCCceEEEEEEeCCCcccHHHHHHhcCCCCcEEEEECCCCCccccccccccceeeeeHHHhCcCcCChhhc
Confidence 99999999999999999999999999999999996557999999887763 12468999999999999999
Q ss_pred CCCCCCccccccCCCceeee--ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCC
Q 022046 151 LDKDVPLLLETHQNGMSFNL--CNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYN 228 (303)
Q Consensus 151 ~~~~~p~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~ 228 (303)
..+.+|+||++++|.|.+.. ..+++ ..+ .+++|+++|++++++||+|||+|+||++|+++||+||+|+|+||++|+
T Consensus 161 ~~~~~~~ll~~~~~~l~~~~~~~~~~~-~~~-~~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~~G~nvENAay~ 238 (303)
T PLN02402 161 LDKDVPLLLEPHHNHLSFVGDDKLPNG-ISA-SSDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVYRGSYMESAAYN 238 (303)
T ss_pred ccccccccccccccccccccccccccc-ccc-cHHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEEEEEEEEcCCCC
Confidence 99989999999999997621 11111 112 257899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEeCC
Q 022046 229 PSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHCG 295 (303)
Q Consensus 229 ~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~~~ 295 (303)
+|+||||+||++|++++ |+.+.++|+++++++..+..+++-+++|.+|..++|..++.+++.+
T Consensus 239 ~slcAer~Ai~~~v~~G----~g~~~~~i~~ivlve~~~~~vs~~~~~~~~L~~iap~~~l~~~~~~ 301 (303)
T PLN02402 239 PSMGPVQAALVAYVAGG----RGGGYERIVAAVLVEKEGAVVRQEQTARLLLKEISPKCEFKVFHCS 301 (303)
T ss_pred CcccHHHHHHHHHHHcC----CCCccccEEEEEEEecCCCccchHHHHHHHHHhhCCCCceEEEEEe
Confidence 99999999999999991 1333578999999999999999999999999999988888777653
No 3
>PRK09027 cytidine deaminase; Provisional
Probab=100.00 E-value=1.9e-76 Score=555.26 Aligned_cols=260 Identities=40% Similarity=0.637 Sum_probs=239.2
Q ss_pred CCcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHH
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFL 82 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~A 82 (303)
+.+|+|+++|++++++++|+++++.+..++..++++||+|||+|+|||+++++||++|+|+||||++.++++|+||||+|
T Consensus 28 ~~~~~l~~~~~~~l~~~~g~~~~~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy~GvNvE~~~~s~~~tiCAEr~A 107 (295)
T PRK09027 28 DFPAMLTAEQVSQLKSASGLDDDALALALLPLAAACAVTPISHFNVGAIARGVSGNFYFGANMEFAGAALQQTVHAEQSA 107 (295)
T ss_pred CCCeEECHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEEEEEeeccCCCCCCCCcCHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999865667799999999
Q ss_pred HHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCCCcccccc
Q 022046 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETH 162 (303)
Q Consensus 83 i~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~p~l~~~~ 162 (303)
|++|+++|+++|++|+|+.+|||+|||||+||.++++++|++.+. +.++|+||||++|+|+||+.. |+||+++
T Consensus 108 i~~a~~~Ge~~i~~I~v~~sPCG~CRQ~l~E~~~~~~~~i~~~~~-----~~~~L~elLP~~F~~~dl~~~--~~Ll~~~ 180 (295)
T PRK09027 108 ISHAWLRGEKAIADITVNYTPCGHCRQFMNELNSASDLRIHLPGR-----QAHTLHDYLPDAFGPKDLNIT--TLLMDPQ 180 (295)
T ss_pred HHHHHHCCCCceEEEEEEecCchhhHHHHHHhCCCCCeEEEEcCC-----ccccHHHhCcCcCChhhcCcc--ccccCCc
Confidence 999999999999999999999999999999997656898988653 258999999999999999666 5999999
Q ss_pred CCCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHH
Q 022046 163 QNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYL 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~ 242 (303)
+|.+.++ + . ++|+++|++++++||+|||+|+||+||+++||+||+|+|+||++|++|+||||+||++|+
T Consensus 181 ~~~~~~~----~--~-----~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~~G~nvENAAynpslcaer~Al~~~v 249 (295)
T PRK09027 181 DHGLALD----T--G-----DPLIQAALDAANRSHAPYSQSYSGVALETKDGRIYTGRYAENAAFNPSLPPLQGALNLLN 249 (295)
T ss_pred ccccccC----C--H-----HHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEEcCCCCCcccHHHHHHHHHH
Confidence 9999752 1 1 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCC
Q 022046 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286 (303)
Q Consensus 243 ~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~ 286 (303)
++ |. +..+|++++++++.+.+++|||+|||+|+||+++
T Consensus 250 ~~-----G~-~~~~i~~i~lv~~~~~~ispcg~cRq~L~ef~~~ 287 (295)
T PRK09027 250 LS-----GE-DFSDIQRAVLVEKADAKLSQWDATQATLKALGCH 287 (295)
T ss_pred Hc-----CC-CccCEEEEEEEeCCCCCcCchHHHHHHHHHhCCC
Confidence 99 53 3468999999999888999999999999999843
No 4
>PLN02182 cytidine deaminase
Probab=100.00 E-value=5.9e-65 Score=481.81 Aligned_cols=275 Identities=50% Similarity=0.841 Sum_probs=238.1
Q ss_pred CcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHH
Q 022046 4 PRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLI 83 (303)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai 83 (303)
.+|+|+++|+ +++|+++++.|..+++.++++||+|||+|+|||+++++||++|+||||||++||++.|+||||+||
T Consensus 28 f~~~l~a~~~----~~~gl~~~~ll~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy~GvNVEnas~pl~~tICAEr~AI 103 (339)
T PLN02182 28 FKFVFTANEA----AAEGVTDPIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVYLGVNVDFPGLPLHHSIHAEQFLV 103 (339)
T ss_pred cceeEcHHHH----HHhCCChHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeecCCCccCCccCHHHHHH
Confidence 4589999999 457999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHcCCCcEEE--EEEEe------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCC
Q 022046 84 TNLILNAEPRLQH--LAVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDV 155 (303)
Q Consensus 84 ~~Av~~G~~~i~a--iav~~------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~ 155 (303)
++|+++|+++|+. |+|.+ +|||+|||||+||.+..+++|++.+.++.. +..+|+||||++| |+| .
T Consensus 104 ~~A~~~Ge~~i~~iaVaV~~~~~~~~sPCG~CRQfm~Ef~~~~di~I~l~~~~~~~-~~~tL~eLLP~~F-P~d-----~ 176 (339)
T PLN02182 104 TNLALNSEKDLCELAVAISTDGKEFGTPCGHCLQFLMEMSNALDIKILSKPKHEAG-SFSSLRHLLPNVL-PKG-----S 176 (339)
T ss_pred HHHHHCCCCceEEEEEEEecCCCCCcCCCchhHHHHHHhCCCCCeEEEEcCCCCce-EEeEHHHhCcCcC-CCC-----C
Confidence 9999999999994 44443 899999999999976558999887666543 4689999999999 888 2
Q ss_pred CccccccCCCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHH
Q 022046 156 PLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQ 235 (303)
Q Consensus 156 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr 235 (303)
|+||++++|.|.+....++. ..+ .-++|..+|++++++||+|||+++.|+||.+.||+||+|+|+||++||||+.|.|
T Consensus 177 ~~Ll~~~~~~l~~~~~~~~~-~~~-~~~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy~G~YaEnAAfNPSL~PlQ 254 (339)
T PLN02182 177 PFLLEKRDNCLTLSGPAGEI-CSL-DCSHLKCKALAAANNSFSPYTESPSGVALLDNDGKWYRGWYIESVASNPSFGPVQ 254 (339)
T ss_pred chhccccccceeeccccccc-ccc-cccHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEEEeeehhhcccCCCccHHH
Confidence 78999999999762100110 000 0158999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCC
Q 022046 236 AALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCG 295 (303)
Q Consensus 236 ~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~ 295 (303)
+||..++.++ |++++.+|+++++|+..+..+++-+..|.+|..++ |++++.++...
T Consensus 255 aALv~~~~~~----~G~~~~~I~~avLvE~~~a~vsq~~~t~~~L~~i~~p~~~~~~~~~~ 311 (339)
T PLN02182 255 AALVDFVARS----RGKMFNKIVQAVLVEKNNAIVSQERTAKIILDTIAAPNCDFKVFHCS 311 (339)
T ss_pred HHHHHHHHhc----CCCChhhhheEEEEecCCCccchHHHHHHHHHHhcCCCCceEEEEEe
Confidence 9999999982 23456799999999999999999999999999997 88766666554
No 5
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=292.12 Aligned_cols=121 Identities=37% Similarity=0.523 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe-----
Q 022046 27 LLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA----- 101 (303)
Q Consensus 27 ~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~----- 101 (303)
+|+.+|++++++||+|||+|+|||+++++||++|+|+||||++|+ +|+||||+||++||+.|.++|+.|+|++
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~tG~NiEnasy~--~t~CAErsAI~~ais~G~~~~~~v~v~~~~~~~ 84 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIYTGANVENASYG--LTVCAERSAIFKAISEGKRKFDAVVVVADTGKP 84 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEEEEEeeeccccc--chhhHHHHHHHHHHHcCCCcEEEEEEEcCCCCC
Confidence 688999999999999999999999999999999999999999986 5999999999999999999999999986
Q ss_pred -CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 102 -APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 -~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|+||.. +|..|++.+.++.. +.++|+||||++|+++||.
T Consensus 85 ~sPCG~CRQ~i~Ef~~-~d~~ii~~~~~~~~-~~~tl~eLLP~~F~~~~l~ 133 (134)
T COG0295 85 VSPCGACRQVLAEFCG-DDTLIILLPKDGIV-KTMTLGELLPDAFGPKDLE 133 (134)
T ss_pred cCCcHHHHHHHHHhcC-CCceEEEecCCCcE-EEEEHHHhCcccCCccccc
Confidence 899999999999974 78889998877765 6899999999999999975
No 6
>PRK05578 cytidine deaminase; Validated
Probab=100.00 E-value=1.1e-40 Score=281.16 Aligned_cols=122 Identities=34% Similarity=0.477 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe----
Q 022046 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA---- 101 (303)
Q Consensus 26 ~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~---- 101 (303)
++|+++|+++++++|+|||+|+||||++++||++|+|+||||++|+. ++||||+||++|+++|+++|++|+|++
T Consensus 4 ~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~~G~nvEna~~~~--~~CAE~~Ai~~av~~G~~~i~~i~vv~~~~~ 81 (131)
T PRK05578 4 KELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIYTGCNIENASYGL--TNCAERTAIFKAISEGGGRLVAIACVGETGE 81 (131)
T ss_pred HHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEEeeCccccC--CcCHHHHHHHHHHHcCCCceEEEEEEecCCC
Confidence 46999999999999999999999999999999999999999999864 999999999999999999999999986
Q ss_pred --CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 102 --APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 --~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|+||. .++++|++.+.++.. +.++|+||||++|+|+||.
T Consensus 82 ~~sPCG~CRQ~l~e~~-~~~~~v~l~~~~~~~-~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 82 PLSPCGRCRQVLAEFG-GPDLLVTLVAKDGPT-GEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred ccCccHHHHHHHHHhC-CCCcEEEEEcCCCCE-EEEEHHHhCcCcCChhhcC
Confidence 89999999999996 379999999888765 6899999999999999874
No 7
>PRK12411 cytidine deaminase; Provisional
Probab=100.00 E-value=1.7e-40 Score=280.22 Aligned_cols=122 Identities=30% Similarity=0.470 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe----
Q 022046 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA---- 101 (303)
Q Consensus 26 ~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~---- 101 (303)
++|+++|+++++++|+|||+|+||||++++||++|+|+||||++|+. ++||||+||++|+++|+++|++|+|++
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~~G~nvEn~s~~~--s~CAE~~Ai~~av~~g~~~i~~i~v~~~~~~ 81 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGL--CNCAERTALFKAVSEGDKEFVAIAIVADTKR 81 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEEEEEEeecCCCCc--CcCHHHHHHHHHHHCCCCceEEEEEEeCCCC
Confidence 57999999999999999999999999999999999999999998864 999999999999999999999999998
Q ss_pred --CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 102 --APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 --~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|+||.+ ++++|++.+.++.. +.++|+||||++|++++|+
T Consensus 82 ~~sPCG~CRQ~l~Ef~~-~~~~v~i~~~~~~~-~~~~l~eLLP~~f~~~~l~ 131 (132)
T PRK12411 82 PVPPCGACRQVMVELCK-QDTKVYLSNLHGDV-QETTVGELLPGAFLAEDLH 131 (132)
T ss_pred CcCCchhHHHHHHHhCC-CCcEEEEEcCCCCE-EEEEHHHhCcCcCCHhhcC
Confidence 899999999999964 58999999887765 5799999999999999873
No 8
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.7e-39 Score=276.63 Aligned_cols=165 Identities=51% Similarity=0.718 Sum_probs=135.2
Q ss_pred CCCcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHH
Q 022046 2 ERPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQF 81 (303)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~ 81 (303)
.+++|++++.|.++. |.++.++|..++++|++.||+|||+|+|||++|++||+||+||||||++| +.+|||||+
T Consensus 2 ~~~k~~~~~~ea~s~----~~~~~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif~G~NVEn~~~--~~sIcAEr~ 75 (173)
T KOG0833|consen 2 QQTKFVLTAEEAASE----GVEDPQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIFLGVNVENASY--HHSICAERF 75 (173)
T ss_pred CccccccccchHhhc----CCCCHHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEEEeeeecccCC--CCcccHHHH
Confidence 467899999999884 88999999999999999999999999999999999999999999999765 569999999
Q ss_pred HHHHHHHcCCCcEEEEEEEe-------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCC
Q 022046 82 LITNLILNAEPRLQHLAVSA-------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKD 154 (303)
Q Consensus 82 Ai~~Av~~G~~~i~aiav~~-------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~ 154 (303)
||.+++++|++++.+++|+. +|||+|||||.||.+.. .|++...++.. +
T Consensus 76 ai~~l~l~g~~k~~~~aV~~~~~~~f~tPCG~CRQfl~Ef~~~~--~l~~~~~n~~~-----l----------------- 131 (173)
T KOG0833|consen 76 AIANLALNGERKFRAIAVVAYEDGDFTTPCGVCRQFLREFGNAS--LLLEYRANCLY-----L----------------- 131 (173)
T ss_pred HHHHHHHcCcccceEEEEEecCCCCcCCCcHHHHHHHHHHhhcc--eeeeecCCCcc-----c-----------------
Confidence 99999999999999999885 89999999999997422 23332222211 0
Q ss_pred CCccccccCCCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE
Q 022046 155 VPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY 217 (303)
Q Consensus 155 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy 217 (303)
..+ .. .++ -.|-..|+.+++++|+|||+.+.|.++.+ ||++|
T Consensus 132 ----~~~----------~~-~~~-----~~~~~~aL~aa~~s~~p~sk~~sgv~l~~-~g~~y 173 (173)
T KOG0833|consen 132 ----SDT----------NS-EDC-----SHLKCRALLAANFSYAPYSKCPSGVALID-DGEVY 173 (173)
T ss_pred ----ccc----------cc-hhc-----cchhhhHhhhhcCCccccccCccccceec-CCeeC
Confidence 000 00 001 12345788899999999999999999999 99986
No 9
>PRK08298 cytidine deaminase; Validated
Probab=100.00 E-value=1.2e-38 Score=270.15 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=109.4
Q ss_pred CChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe
Q 022046 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101 (303)
Q Consensus 22 ~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~ 101 (303)
|+.+++|+++|+++++++|+||| +||||++++||+||+||||||++|++ ++||||+||++|++.|.+.|+.|+|++
T Consensus 1 ~~~~~~L~~~A~~a~~~aY~PYS--~VgAAllt~dG~i~tG~NvEnas~~~--t~CAEr~Ai~~av~~G~~~~~~i~v~~ 76 (136)
T PRK08298 1 MNIEQALYDVAKQLIEQRYPNGW--GGAAAMRVEDGTILTSVAPEVINAST--ELCMETGAICEAHKLQKRVTHSICVAR 76 (136)
T ss_pred CcHHHHHHHHHHHHHHhccCCCC--ceeEEEEeCCCCEEEEEeecCCCCCc--chhHHHHHHHHHHHCCCceEEEEEEEc
Confidence 45678899999999999999999 99999999999999999999999874 999999999999999999999999973
Q ss_pred ----------CCChhhHHHHHHhhCCCccEEEEecCCCc-eeeEecccccCCCCcCC
Q 022046 102 ----------APCGHCRQFLQELRNTSDINICITSINSN-ERKYHPLSHLLPDRFGP 147 (303)
Q Consensus 102 ----------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~-~~~~~~l~eLLP~~f~~ 147 (303)
+|||.|||+|+||. ++++|++.+.+|. .++.++|+||||++|+.
T Consensus 77 ~~~~~~~~~~sPCG~CRQvl~Ef~--~~~~v~~~~~~g~~~~~~~~l~eLLP~~F~~ 131 (136)
T PRK08298 77 ENEHSELKVLSPCGVCQERLFYWG--PDVMCAVTNADDPTDIIFKPLKELQPYHWTE 131 (136)
T ss_pred CCCcCCCcccCCChhHHHHHHHhC--CCCEEEEECCCCCceEEEEEHHHhCchhhcc
Confidence 59999999999993 7999999888773 23689999999999985
No 10
>PRK06848 hypothetical protein; Validated
Probab=100.00 E-value=2e-38 Score=269.75 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=109.3
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe--
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA-- 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~-- 101 (303)
++++|+++|+++++++|+| |+|+||||++++||++|+|+||||++|+. ++||||+||++|+++|+++|++|++++
T Consensus 6 ~~~~L~~~A~~a~~~ay~p-s~f~VgAa~l~~~G~i~~G~NvEnas~~~--tiCAEr~Ai~~av~~g~~~i~~i~~v~~~ 82 (139)
T PRK06848 6 EDYELIKAAEKVIEKRYRN-DWHHVGAALRTKTGRIYAAVHLEAYVGRI--TVCAEAIAIGKAISEGDHEIDTIVAVRHP 82 (139)
T ss_pred HHHHHHHHHHHHHHhccCC-CCCcEEEEEEeCCCCEEEEEEeecCCCCc--ccCHHHHHHHHHHHcCCCceEEEEEEecC
Confidence 4568999999999999999 99999999999999999999999998864 999999999999999999999997664
Q ss_pred ------------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCC
Q 022046 102 ------------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149 (303)
Q Consensus 102 ------------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~ 149 (303)
+|||+|||+|.||. ++++|++.+.++ . +.++|+||||++|++.|
T Consensus 83 ~~~~~~~~~~~~~PCG~CRQvl~E~~--~~~~v~v~~~~~-~-~~~~l~eLLP~~f~~~~ 138 (139)
T PRK06848 83 KPHEDDREIWVVSPCGACRELISDYG--KNTNVIVPYNDE-L-VKVNIMELLPNKYTREV 138 (139)
T ss_pred cccccccCCCccCCChhhHHHHHHhC--CCCEEEEECCCC-e-EEEEHHHhCccccCCCC
Confidence 59999999999994 789999998877 3 68999999999999865
No 11
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=100.00 E-value=2e-36 Score=253.78 Aligned_cols=121 Identities=39% Similarity=0.562 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe----
Q 022046 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA---- 101 (303)
Q Consensus 26 ~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~---- 101 (303)
++|+++|+++++++|+|||+|+|||+++++||++|+|+|+||++++. ++||||+||.+|++.|+++|++|+++.
T Consensus 1 ~~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~G~n~e~~~~~~--s~~AE~~Ai~~a~~~g~~~i~~i~vv~~~~~ 78 (127)
T TIGR01354 1 DKLFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFTGVNVENASYPL--TICAERSAIGKAISAGYRKFVAIAVADSADD 78 (127)
T ss_pred CHHHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEEEEeecccCCCC--CcCHHHHHHHHHHHcCCCCeEEEEEEeCCCC
Confidence 35899999999999999999999999999999999999999998764 999999999999999999999999986
Q ss_pred --CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCC
Q 022046 102 --APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDL 150 (303)
Q Consensus 102 --~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l 150 (303)
+|||+|||+|.||.+ ++++|++.+.++.. +.++|+||||++|+++||
T Consensus 79 ~~sPCG~Crq~l~e~~~-~~~~v~~~~~~~~~-~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 79 PVSPCGACRQVLAEFAG-PDTPIYMTNNDGTY-KVYTVGELLPFGFGPSDL 127 (127)
T ss_pred CcCccHHHHHHHHHhCC-CCcEEEEECCCCCE-EEEEHHHhCcCcCCcCcC
Confidence 899999999999973 68999999988865 689999999999999875
No 12
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=249.71 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAAL 262 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~ 262 (303)
++++.+|.+++++||+|||||+|||+++++||++|+|+||||++|+.++||||+||++|++. |. ++|+.+++
T Consensus 6 ~~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-----G~---~~~~~v~v 77 (134)
T COG0295 6 LELFALAPEAAANAYAPYSKFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-----GK---RKFDAVVV 77 (134)
T ss_pred HHHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-----CC---CcEEEEEE
Confidence 48899999999999999999999999999999999999999999999999999999999999 65 68999999
Q ss_pred EeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 263 VEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 263 v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
+.+.+.+++|||+|||+|+||. +|.+|++.+.++.++
T Consensus 78 ~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~~~~~~~~ 115 (134)
T COG0295 78 VADTGKPVSPCGACRQVLAEFCGDDTLIILLPKDGIVK 115 (134)
T ss_pred EcCCCCCcCCcHHHHHHHHHhcCCCceEEEecCCCcEE
Confidence 9999999999999999999999 999999998887543
No 13
>PRK05578 cytidine deaminase; Validated
Probab=100.00 E-value=1.6e-34 Score=243.59 Aligned_cols=110 Identities=29% Similarity=0.413 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 182 ~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
|++|+++|+++++++|+|||+|+||||++++||++|+|+||||++|++++||||+||++|+++ |+ ++|++++
T Consensus 3 ~~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~-----G~---~~i~~i~ 74 (131)
T PRK05578 3 WKELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIYTGCNIENASYGLTNCAERTAIFKAISE-----GG---GRLVAIA 74 (131)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEEeeCccccCCcCHHHHHHHHHHHc-----CC---CceEEEE
Confidence 679999999999999999999999999999999999999999999999999999999999999 65 5899999
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 262 LVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
++.+.+..++|||+|||+|+||. ++++|++.+.++..+
T Consensus 75 vv~~~~~~~sPCG~CRQ~l~e~~~~~~~v~l~~~~~~~~ 113 (131)
T PRK05578 75 CVGETGEPLSPCGRCRQVLAEFGGPDLLVTLVAKDGPTG 113 (131)
T ss_pred EEecCCCccCccHHHHHHHHHhCCCCcEEEEEcCCCCEE
Confidence 99988888999999999999998 899999999888655
No 14
>PRK12411 cytidine deaminase; Provisional
Probab=100.00 E-value=6.9e-34 Score=240.02 Aligned_cols=109 Identities=24% Similarity=0.357 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAAL 262 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~ 262 (303)
++|+++|.++++++|+|||+|+||||++++||++|+|+||||++|++++||||+||++|+++ |. ++|++|++
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~~G~nvEn~s~~~s~CAE~~Ai~~av~~-----g~---~~i~~i~v 75 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-----GD---KEFVAIAI 75 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEEEEEEeecCCCCcCcCHHHHHHHHHHHC-----CC---CceEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999 75 58999999
Q ss_pred EeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 263 VEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 263 v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
+.+.+.+++|||+|||+|+||. ++++|++.+.+++.+
T Consensus 76 ~~~~~~~~sPCG~CRQ~l~Ef~~~~~~v~i~~~~~~~~ 113 (132)
T PRK12411 76 VADTKRPVPPCGACRQVMVELCKQDTKVYLSNLHGDVQ 113 (132)
T ss_pred EeCCCCCcCCchhHHHHHHHhCCCCcEEEEEcCCCCEE
Confidence 9988888999999999999998 689999998887544
No 15
>PRK08298 cytidine deaminase; Validated
Probab=100.00 E-value=6.8e-34 Score=241.05 Aligned_cols=106 Identities=11% Similarity=-0.002 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 181 ~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
.|++|+++|+++++++|+||| +||||++++||+||+|+||||++|++++||||+||++|++. |. ++|+.|
T Consensus 3 ~~~~L~~~A~~a~~~aY~PYS--~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~-----G~---~~~~~i 72 (136)
T PRK08298 3 IEQALYDVAKQLIEQRYPNGW--GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKL-----QK---RVTHSI 72 (136)
T ss_pred HHHHHHHHHHHHHHhccCCCC--ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHC-----CC---ceEEEE
Confidence 578999999999999999999 99999999999999999999999999999999999999999 65 579999
Q ss_pred EEEeCCC-C---CcCCcHHHHHHHHHHCCCCeEEEEeCCC
Q 022046 261 ALVEKED-A---VVRQEHAARLLLQVISPKCEFNVFHCGC 296 (303)
Q Consensus 261 ~~v~~~~-~---~~~PCG~CRq~L~e~~~~~~v~v~~~~~ 296 (303)
+++.+.+ . +++|||+|||+|+||.|+++|++.+.++
T Consensus 73 ~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~~~v~~~~~~g 112 (136)
T PRK08298 73 CVARENEHSELKVLSPCGVCQERLFYWGPDVMCAVTNADD 112 (136)
T ss_pred EEEcCCCcCCCcccCCChhHHHHHHHhCCCCEEEEECCCC
Confidence 9887655 2 6899999999999999999999998887
No 16
>PRK06848 hypothetical protein; Validated
Probab=99.98 E-value=1.1e-31 Score=228.52 Aligned_cols=105 Identities=19% Similarity=0.088 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAAL 262 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~ 262 (303)
++|+++|+++++++|+| |+|+||||++++||+||+|+||||++|+.++||||+||++|+++ |. ++|++|++
T Consensus 8 ~~L~~~A~~a~~~ay~p-s~f~VgAa~l~~~G~i~~G~NvEnas~~~tiCAEr~Ai~~av~~-----g~---~~i~~i~~ 78 (139)
T PRK06848 8 YELIKAAEKVIEKRYRN-DWHHVGAALRTKTGRIYAAVHLEAYVGRITVCAEAIAIGKAISE-----GD---HEIDTIVA 78 (139)
T ss_pred HHHHHHHHHHHHhccCC-CCCcEEEEEEeCCCCEEEEEEeecCCCCcccCHHHHHHHHHHHc-----CC---CceEEEEE
Confidence 68999999999999999 99999999999999999999999999999999999999999999 65 57999988
Q ss_pred EeCCC--------CCcCCcHHHHHHHHHHCCCCeEEEEeCCC
Q 022046 263 VEKED--------AVVRQEHAARLLLQVISPKCEFNVFHCGC 296 (303)
Q Consensus 263 v~~~~--------~~~~PCG~CRq~L~e~~~~~~v~v~~~~~ 296 (303)
+...+ .+++|||+|||+|.||.++++|++.+.++
T Consensus 79 v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~~~v~v~~~~~ 120 (139)
T PRK06848 79 VRHPKPHEDDREIWVVSPCGACRELISDYGKNTNVIVPYNDE 120 (139)
T ss_pred EecCcccccccCCCccCCChhhHHHHHHhCCCCEEEEECCCC
Confidence 86432 46899999999999999999999998877
No 17
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.97 E-value=3.1e-31 Score=222.35 Aligned_cols=108 Identities=27% Similarity=0.373 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEE
Q 022046 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALV 263 (303)
Q Consensus 184 ~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v 263 (303)
+|+++|+++++++|+|||+|+|||+++++||+||+|+|+||++|++++||||+||.+|++. |. ++|++++++
T Consensus 2 ~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~G~n~e~~~~~~s~~AE~~Ai~~a~~~-----g~---~~i~~i~vv 73 (127)
T TIGR01354 2 KLFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFTGVNVENASYPLTICAERSAIGKAISA-----GY---RKFVAIAVA 73 (127)
T ss_pred HHHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHc-----CC---CCeEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999 65 489999999
Q ss_pred eCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 264 EKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 264 ~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
++.+..++|||+|||+|+||+ ++++|++.+.++.++
T Consensus 74 ~~~~~~~sPCG~Crq~l~e~~~~~~~v~~~~~~~~~~ 110 (127)
T TIGR01354 74 DSADDPVSPCGACRQVLAEFAGPDTPIYMTNNDGTYK 110 (127)
T ss_pred eCCCCCcCccHHHHHHHHHhCCCCcEEEEECCCCCEE
Confidence 988888999999999999998 899999999888654
No 18
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=99.96 E-value=6.3e-30 Score=212.79 Aligned_cols=123 Identities=56% Similarity=0.864 Sum_probs=86.5
Q ss_pred ccccCCCCcCCCCCCCCCCCccccccCCCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCE
Q 022046 137 LSHLLPDRFGPNDLLDKDVPLLLETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNI 216 (303)
Q Consensus 137 l~eLLP~~f~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~i 216 (303)
|.++||++|+|+||+.. |+||++++|.+.+. .. +.|+.+|++++++||+|||++++|+||+++||+|
T Consensus 1 L~~~LP~~FGP~DL~i~--~~Ll~~~~~~l~~~--~~---------d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i 67 (124)
T PF08211_consen 1 LHEYLPDAFGPKDLGIT--PLLLEPQDHGLALE--SE---------DPLVQAALEAANRSYAPYSKCPSGVALLTSDGRI 67 (124)
T ss_dssp HHHHSTT--SGGGGTS---S-BTS------------S---------SHHHHHHHHHHCT-B-TTT---EEEEEEETTS-E
T ss_pred CcccCcCCCCccccCCc--ccccCCCCCccccC--Cc---------cHHHHHHHHHHHhccCCccCCceeEEEEeCCCCE
Confidence 57899999999999773 69999999999752 11 3799999999999999999999999999999999
Q ss_pred EEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHH
Q 022046 217 YKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARL 278 (303)
Q Consensus 217 y~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq 278 (303)
|+|+|+||++||+|++|+|+||.+++++ | +++.+|+++++|+..+..+++-.+.|.
T Consensus 68 ~~G~y~EnAAfNPSl~PlQ~AL~~~~~~-----G-~~~~~I~~avLvE~~~a~vs~~~~t~~ 123 (124)
T PF08211_consen 68 YTGRYAENAAFNPSLPPLQAALVQAVLA-----G-KDFEDIVRAVLVEKKDAKVSQEATTRA 123 (124)
T ss_dssp EEEE-B--TTSTT-B-HHHHHHHHHHHT-----T---GGGEEEEEEEEETT-SS-SHHHHHH
T ss_pred EEEEEEeecccCCChHHHHHHHHHHHHc-----C-CChhhEeEEEEEEcCCCceecHHHhhc
Confidence 9999999999999999999999999999 4 567899999999999888888777764
No 19
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=99.96 E-value=1e-28 Score=231.18 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeec--cCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYME--SAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvE--naa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+.|++.|.+++++||+|||+|+|||+++++||+||+|+||| |++|+.|+||||+||++|+++ |+ ++|++|
T Consensus 23 ~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai~~Av~~-----Ge---~~i~~I 94 (283)
T TIGR01355 23 KLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLISHLALN-----NE---RGLNDL 94 (283)
T ss_pred HHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHHHHHHHc-----CC---CceEEE
Confidence 68999999999999999999999999999999999999999 999999999999999999999 76 689999
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHC--CCCeEEEEeCCCcc
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVIS--PKCEFNVFHCGCKK 298 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~--~~~~v~v~~~~~~~ 298 (303)
+++ ++|||+|||+|+||. ++++|++.+.++.+
T Consensus 95 av~------~~PCG~CRQ~l~Ef~~~~~~~i~l~~~~~~~ 128 (283)
T TIGR01355 95 AVS------YAPCGHCRQFLNEIRNASSIKILLPDPHNNR 128 (283)
T ss_pred EEE------eCCcchhHHHHHHhcCCCCcEEEEEcCCCcE
Confidence 887 589999999999997 58999999887753
No 20
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=99.95 E-value=5.2e-28 Score=209.84 Aligned_cols=105 Identities=23% Similarity=0.288 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAAL 262 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~ 262 (303)
++|...++++++.+|+|||+|+|||++++++|+||+|+||||++|..+|||||.||.+++++ |+ +++.++++
T Consensus 22 ~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif~G~NVEn~~~~~sIcAEr~ai~~l~l~-----g~---~k~~~~aV 93 (173)
T KOG0833|consen 22 QELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIFLGVNVENASYHHSICAERFAIANLALN-----GE---RKFRAIAV 93 (173)
T ss_pred HHHHHHHHHHHHhccCCccCCceEEEEEecCCcEEEeeeecccCCCCcccHHHHHHHHHHHc-----Cc---ccceEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999 76 68888766
Q ss_pred Ee-CCCCCcCCcHHHHHHHHHHCCCCeEEEEeCC
Q 022046 263 VE-KEDAVVRQEHAARLLLQVISPKCEFNVFHCG 295 (303)
Q Consensus 263 v~-~~~~~~~PCG~CRq~L~e~~~~~~v~v~~~~ 295 (303)
+. ..+.+.+|||.|||||.||.....|.+...+
T Consensus 94 ~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~~~~~n 127 (173)
T KOG0833|consen 94 VAYEDGDFTTPCGVCRQFLREFGNASLLLEYRAN 127 (173)
T ss_pred EecCCCCcCCCcHHHHHHHHHHhhcceeeeecCC
Confidence 64 3445899999999999999843344444443
No 21
>PLN02182 cytidine deaminase
Probab=99.95 E-value=3.3e-27 Score=224.56 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCC--CCCHHHHHHHHHHHhCCCCCCCCccceee--EE
Q 022046 185 LKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNP--SLGPVQAALVAYLAAGGSGGGGGGYERIV--AA 260 (303)
Q Consensus 185 l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~--slcAEr~Al~~a~~~~~~~~G~~~~~~i~--~i 260 (303)
+...+..+++++|+|||+|+|||+++++||++|+|+||||++|++ ++||||+||++|+++ |+ ++|+ +|
T Consensus 48 l~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy~GvNVEnas~pl~~tICAEr~AI~~A~~~-----Ge---~~i~~iaV 119 (339)
T PLN02182 48 LPNLIRKAMCLARAPISKYKVGAVGRASSGRVYLGVNVDFPGLPLHHSIHAEQFLVTNLALN-----SE---KDLCELAV 119 (339)
T ss_pred HHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeecCCCccCCccCHHHHHHHHHHHC-----CC---CceEEEEE
Confidence 333455668899999999999999999999999999999999998 999999999999999 76 5787 55
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHC--CCCeEEEEeCCCcc
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVIS--PKCEFNVFHCGCKK 298 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~--~~~~v~v~~~~~~~ 298 (303)
.++.+...+++|||+|||||+||. ++++|++.+.++.+
T Consensus 120 aV~~~~~~~~sPCG~CRQfm~Ef~~~~di~I~l~~~~~~~ 159 (339)
T PLN02182 120 AISTDGKEFGTPCGHCLQFLMEMSNALDIKILSKPKHEAG 159 (339)
T ss_pred EEecCCCCCcCCCchhHHHHHHhCCCCCeEEEEcCCCCce
Confidence 666666667899999999999998 38888776666543
No 22
>PLN02402 cytidine deaminase
Probab=99.95 E-value=3.3e-27 Score=222.26 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCC--CCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNP--SLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~--slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+-|...+.++++++|+|||+|+|||+++++||++|+|+||||++|++ ++||||+||++|+++ |+ ++|++|
T Consensus 26 ~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~~GvNVEnasy~l~~tiCAEr~Ai~~av~~-----G~---~~i~~i 97 (303)
T PLN02402 26 QLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIFLGVNLEFPGLPLHHSVHAEQFLITNLTLN-----AE---PHLKYV 97 (303)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEEEEEeeecCCCCCCCcccHHHHHHHHHHHc-----CC---CceEEE
Confidence 56777888999999999999999999999999999999999999987 999999999999999 76 579998
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHC--CCCeEEEEeCCCc
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVIS--PKCEFNVFHCGCK 297 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~--~~~~v~v~~~~~~ 297 (303)
+++ .+|||+|||+|+||. ++++|++.+.+++
T Consensus 98 aV~------~sPCG~CRQ~l~Ef~~~~~~~I~i~~~~~~ 130 (303)
T PLN02402 98 AVS------AAPCGHCRQFFQEIRDAPDIKILITGDSNS 130 (303)
T ss_pred EEE------eCCCcccHHHHHHhcCCCCcEEEEECCCCC
Confidence 876 389999999999995 7999999988773
No 23
>PRK09027 cytidine deaminase; Provisional
Probab=99.94 E-value=2.7e-26 Score=216.21 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=89.6
Q ss_pred ChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCC--cEEEEEEE
Q 022046 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP--RLQHLAVS 100 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~--~i~aiav~ 100 (303)
.+++.|+++|.+++++||+|||+|+||+|++++||++|+|+|+||++|+. |+||||+||++|++.|.+ +|++++++
T Consensus 187 ~~~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~~G~nvENAAynp--slcaer~Al~~~v~~G~~~~~i~~i~lv 264 (295)
T PRK09027 187 DTGDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIYTGRYAENAAFNP--SLPPLQGALNLLNLSGEDFSDIQRAVLV 264 (295)
T ss_pred CCHHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEEcCCCCC--cccHHHHHHHHHHHcCCCccCEEEEEEE
Confidence 35567999999999999999999999999999999999999999999875 999999999999999986 79999999
Q ss_pred e------CCChhhHHHHHHhhCCCccEEEE
Q 022046 101 A------APCGHCRQFLQELRNTSDINICI 124 (303)
Q Consensus 101 ~------~PCG~CRQ~L~E~~~~~~~~V~~ 124 (303)
. +|||.|||+|.||.+ .+++.+.
T Consensus 265 ~~~~~~ispcg~cRq~L~ef~~-~~~~~~~ 293 (295)
T PRK09027 265 EKADAKLSQWDATQATLKALGC-HELERVL 293 (295)
T ss_pred eCCCCCcCchHHHHHHHHHhCC-CCcEEEe
Confidence 7 799999999999974 3555543
No 24
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.87 E-value=2.2e-21 Score=158.38 Aligned_cols=103 Identities=26% Similarity=0.300 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCC
Q 022046 187 YAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKE 266 (303)
Q Consensus 187 ~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~ 266 (303)
.+|+++.+++|+|||+++|||+++++||++|+|.|+|++.|++++|||+.||.+|... |. +.+...+.+...
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~~G~n~e~~~~~~~~hAE~~ai~~~~~~-----~~---~~~~~~i~vs~~ 73 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIFTGVNVENASYGLTLCAERTAIGKAVSE-----GL---RRYLVTWAVSDE 73 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEEEeEEeecCCCCCCcCHHHHHHHHHHHc-----CC---CceEEEEEEECC
Confidence 4577788888999999999999999999999999999999999999999999999999 54 234444445444
Q ss_pred CCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCc
Q 022046 267 DAVVRQEHAARLLLQVIS-PKCEFNVFHCGCK 297 (303)
Q Consensus 267 ~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~ 297 (303)
+...+|||+|||+|.+|. .++.+.+.+.+++
T Consensus 74 ~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~~~ 105 (112)
T cd01283 74 GGVWSPCGACRQVLAEFLPSRLYIIIDNPKGE 105 (112)
T ss_pred CCccCCCHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 677899999999999999 5888888887763
No 25
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.87 E-value=2.9e-21 Score=157.68 Aligned_cols=99 Identities=37% Similarity=0.486 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCC-CcEEEEEEE-----eCC
Q 022046 30 TLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE-PRLQHLAVS-----AAP 103 (303)
Q Consensus 30 ~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~-~~i~aiav~-----~~P 103 (303)
..|.++..++|+|||+|+|||+++++||++|.|+|+|+++++. ++|||+.||.+|.+.|. .....+++. -+|
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~~G~n~e~~~~~~--~~hAE~~ai~~~~~~~~~~~~~~i~vs~~~~~~sP 79 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIFTGVNVENASYGL--TLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSP 79 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEEEeEEeecCCCCC--CcCHHHHHHHHHHHcCCCceEEEEEEECCCCccCC
Confidence 3466777888999999999999999999999999999998754 99999999999999987 456666777 489
Q ss_pred ChhhHHHHHHhhCCCccEEEEecCCCce
Q 022046 104 CGHCRQFLQELRNTSDINICITSINSNE 131 (303)
Q Consensus 104 CG~CRQ~L~E~~~~~~~~V~~~~~~~~~ 131 (303)
||+|||+|.||.. .++.+++.+.++..
T Consensus 80 C~~C~~~l~~~~~-~~v~~~~~~~~~~~ 106 (112)
T cd01283 80 CGACRQVLAEFLP-SRLYIIIDNPKGEE 106 (112)
T ss_pred CHHHHHHHHHhCC-CCeEEEEEcCCCCE
Confidence 9999999999974 58888888877643
No 26
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=99.63 E-value=8.9e-16 Score=128.10 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=61.4
Q ss_pred HcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCC--cEEE
Q 022046 19 KSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP--RLQH 96 (303)
Q Consensus 19 ~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~--~i~a 96 (303)
.+.+...+.|+++|.+++.+||+|||++++|+|+++.||+||+|.++||++|+. |++++|+|+..++.+|.. .|+.
T Consensus 27 ~l~~~~~d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~~G~y~EnAAfNP--Sl~PlQ~AL~~~~~~G~~~~~I~~ 104 (124)
T PF08211_consen 27 GLALESEDPLVQAALEAANRSYAPYSKCPSGVALLTSDGRIYTGRYAENAAFNP--SLPPLQAALVQAVLAGKDFEDIVR 104 (124)
T ss_dssp ------SSHHHHHHHHHHCT-B-TTT---EEEEEEETTS-EEEEE-B--TTSTT---B-HHHHHHHHHHHTT--GGGEEE
T ss_pred ccccCCccHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEeecccCC--ChHHHHHHHHHHHHcCCChhhEeE
Confidence 345556677999999999999999999999999999999999999999999875 999999999999999874 8999
Q ss_pred EEEEeCCChhh
Q 022046 97 LAVSAAPCGHC 107 (303)
Q Consensus 97 iav~~~PCG~C 107 (303)
++++..+.+.=
T Consensus 105 avLvE~~~a~v 115 (124)
T PF08211_consen 105 AVLVEKKDAKV 115 (124)
T ss_dssp EEEEEETT-SS
T ss_pred EEEEEcCCCce
Confidence 99887655543
No 27
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.51 E-value=1.5e-13 Score=109.63 Aligned_cols=84 Identities=31% Similarity=0.417 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCCCCCCceEEEEEeC--CCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEeCCChhh
Q 022046 30 TLVKSAQTLARPPISKFHVGAVGLGS--SGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHC 107 (303)
Q Consensus 30 ~~A~~a~~~ay~PyS~f~VgAavl~~--dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~~PCG~C 107 (303)
+.|.+.++++|.++++++|||+++.+ ++.++.|+|.++..++. +.|||+.||.++...+..+...|++.-.||++|
T Consensus 2 ~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~--~~HAE~~ai~~a~~~~~~~~~tly~tlePC~mC 79 (96)
T cd00786 2 TEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSM--CNHAERTALFNAGSEGDTKGQMLYVALSPCGAC 79 (96)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCC--eeCHHHHHHHHHHHcCCCCceEEEEECCChHHH
Confidence 45677778888999999999999987 56688999999987654 999999999999988877777787777999999
Q ss_pred HHHHHHhh
Q 022046 108 RQFLQELR 115 (303)
Q Consensus 108 RQ~L~E~~ 115 (303)
+|.|.+++
T Consensus 80 ~~ai~~~g 87 (96)
T cd00786 80 AQLIIELG 87 (96)
T ss_pred HHHHHHhC
Confidence 99999996
No 28
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.43 E-value=1.8e-12 Score=103.31 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEeC--CCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEe
Q 022046 187 YAALEAANKSHAPYSKCPSGVAIMDC--EGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVE 264 (303)
Q Consensus 187 ~~A~~a~~~syaPyS~~~vgaal~~~--dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~ 264 (303)
+.|++.++++|.++++++|||+++++ ++.+++|+|.++..++++.|||+.||.++... +. .+...+++.
T Consensus 2 ~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~-----~~---~~~~tly~t- 72 (96)
T cd00786 2 TEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSE-----GD---TKGQMLYVA- 72 (96)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHc-----CC---CCceEEEEE-
Confidence 56788888899999999999999987 56688999999999999999999999999887 32 233334332
Q ss_pred CCCCCcCCcHHHHHHHHHHCCC
Q 022046 265 KEDAVVRQEHAARLLLQVISPK 286 (303)
Q Consensus 265 ~~~~~~~PCG~CRq~L~e~~~~ 286 (303)
..||++|++.|.+++.+
T Consensus 73 -----lePC~mC~~ai~~~gi~ 89 (96)
T cd00786 73 -----LSPCGACAQLIIELGIK 89 (96)
T ss_pred -----CCChHHHHHHHHHhCCC
Confidence 48999999999999854
No 29
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.41 E-value=2.5e-12 Score=102.36 Aligned_cols=91 Identities=29% Similarity=0.334 Sum_probs=75.2
Q ss_pred CChhhhHHHHHHHHHhhcCCCCCCCceEEEEEe-CCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcE--EEEE
Q 022046 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLG-SSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL--QHLA 98 (303)
Q Consensus 22 ~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~-~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i--~aia 98 (303)
|+.++.+++.|.+++++++ +.++++|||+++. +++.++.|.|.+....+ .++|||+.||.++...|...+ ..++
T Consensus 1 m~~~~~~m~~a~~~a~~s~-~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~--~~~HAE~~Ai~~~~~~~~~~~~~~~ly 77 (102)
T PF00383_consen 1 MEWDEEFMRIAIELAKRSR-PCGNFPVGAVIVDPDGKIIATGYNGEPPGKN--PTIHAEMNAIRKAARNGGSSLKGCTLY 77 (102)
T ss_dssp -CHHHHHHHHHHHHHHTHB-TTTSSSEEEEEEETTTEEEEEEESBHHSTTG--GTB-HHHHHHHHHHHTTSSGETTEEEE
T ss_pred CHHHHHHHHHHHHHHHhcc-ccCCCCEEEEEEeccCccEEEEeeeeeeecc--ccccchhhhhhhhhhhccccccCcccc
Confidence 4678899999999999999 7899999999999 56789999999986643 489999999999998874455 5666
Q ss_pred EEeCCChhhHHHHHHhh
Q 022046 99 VSAAPCGHCRQFLQELR 115 (303)
Q Consensus 99 v~~~PCG~CRQ~L~E~~ 115 (303)
++..||++|++.|.+++
T Consensus 78 vt~ePC~~C~~ai~~~g 94 (102)
T PF00383_consen 78 VTLEPCGMCAMAIVHAG 94 (102)
T ss_dssp EEE--BHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHC
Confidence 66699999999999996
No 30
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.12 E-value=3.2e-10 Score=90.20 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEe-CCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceee-EE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMD-CEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV-AA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~-~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~-~i 260 (303)
+++++.|++++++++ +.++++|||++++ .++.++.|.|.+...+++.+|||+.||.++... |. .+++ ..
T Consensus 5 ~~~m~~a~~~a~~s~-~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-----~~---~~~~~~~ 75 (102)
T PF00383_consen 5 EEFMRIAIELAKRSR-PCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-----GG---SSLKGCT 75 (102)
T ss_dssp HHHHHHHHHHHHTHB-TTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-----TS---SGETTEE
T ss_pred HHHHHHHHHHHHhcc-ccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-----cc---ccccCcc
Confidence 678999999999998 8899999999999 567799999999988889999999999999999 42 2332 22
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHCC
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVISP 285 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~~ 285 (303)
+.+ ...||++|++.|.+++.
T Consensus 76 lyv-----t~ePC~~C~~ai~~~gi 95 (102)
T PF00383_consen 76 LYV-----TLEPCGMCAMAIVHAGI 95 (102)
T ss_dssp EEE-----EE--BHHHHHHHHHHTS
T ss_pred ccc-----CCCCHHHHHHHHHHHCc
Confidence 323 24899999999999983
No 31
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=98.67 E-value=9.5e-08 Score=84.25 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=66.2
Q ss_pred CCCceEEEEEeC--------CC--cEEEeeecCCCCCCCCCccChhHHHHHHHHHcC----CCcEEEEEEEe--------
Q 022046 44 SKFHVGAVGLGS--------SG--RIFLGGNVEFPGLPLHQSIHAEQFLITNLILNA----EPRLQHLAVSA-------- 101 (303)
Q Consensus 44 S~f~VgAavl~~--------dG--~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G----~~~i~aiav~~-------- 101 (303)
++-+|-|.++.+ +| ..|.|+|.|- |.|.| ++|+||+||++|.++. .+.++.|+|.+
T Consensus 35 ~~kPVlavLlV~~~~~~~~~~~~~~~~~gvN~Ev-SmPTG-SlCSErNAiG~aLAsdp~l~r~~l~~iavl~~~~~~~~~ 112 (193)
T PF14421_consen 35 DRKPVLAVLLVDKNHCEVHGDGRPEFVRGVNYEV-SMPTG-SLCSERNAIGKALASDPTLRRRDLKMIAVLSVNLTGGGS 112 (193)
T ss_pred CCCcEEEEEEEeccccccCCCCCccEEEEEEeEE-cCCCc-chhHHHHHhhhhhhcCchhhhhhcceeEEEEEeccCCCC
Confidence 455688887653 23 4899999997 46754 9999999999988765 35788888863
Q ss_pred ------------------------------------------CCChhhHHHHHHhhC-CCccEEEEecCC
Q 022046 102 ------------------------------------------APCGHCRQFLQELRN-TSDINICITSIN 128 (303)
Q Consensus 102 ------------------------------------------~PCG~CRQ~L~E~~~-~~~~~V~~~~~~ 128 (303)
.|||.|-++|..+.. ++++.|++++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~pt~~vR~~~~~g~~~~s~~~~NPL~PCGaC~ewL~KIAe~np~f~v~mFd~t 182 (193)
T PF14421_consen 113 SAVTSPTAVEGADDGGGEPTSPVREVFVHGANLTSPRDPNPLFPCGACKEWLRKIAEANPDFRVYMFDDT 182 (193)
T ss_pred ccccCccccccCcccCCCCCccccceeecccccCCCCCCCCCCcchHHHHHHHHHHHhCCCeEEEEecCC
Confidence 699999999998864 589999998764
No 32
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=98.47 E-value=1.3e-06 Score=73.71 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCC---------------------CCCCCCCccChhHHHHH
Q 022046 26 QLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEF---------------------PGLPLHQSIHAEQFLIT 84 (303)
Q Consensus 26 ~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~---------------------~s~~~~~~vCAEr~Ai~ 84 (303)
+..+++|.+++++++.| +++|||+++.+++-|-+|.|-.. ..+ ..++|||..||.
T Consensus 2 ~~~m~~A~~~A~~s~~~--~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~HAE~~Ai~ 77 (131)
T cd01286 2 EYFMAIARLAALRSTCP--RRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKC--CRTVHAEQNAIL 77 (131)
T ss_pred HHHHHHHHHHHHHcCCC--CCCEEEEEEECCEEEEEeeCCCCCCCCCccccccccccccccccccc--CCCCCHHHHHHH
Confidence 44678888888899886 79999999987666778877542 122 248999999999
Q ss_pred HHHHcCCC-cEEEEEEEeCCChhhHHHHHHhh
Q 022046 85 NLILNAEP-RLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 85 ~Av~~G~~-~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
++...|.. .=..|++...||-+|...|.+.+
T Consensus 78 ~a~~~~~~~~~~tLyvT~ePC~~C~~ai~~~g 109 (131)
T cd01286 78 QAARHGVSLEGATLYVTLFPCIECAKLIIQAG 109 (131)
T ss_pred HHhHcCCCcCCeEEEEecCcHHHHHHHHHHhC
Confidence 99876543 23556666699999999999875
No 33
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=98.32 E-value=9.3e-06 Score=68.50 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeec---------------------cCCCCCCCCHHHHHHHHHH
Q 022046 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYME---------------------SAAYNPSLGPVQAALVAYL 242 (303)
Q Consensus 184 ~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvE---------------------naa~~~slcAEr~Al~~a~ 242 (303)
..+..|++++++|+.| +++|||+|+.+++-|-+|.|-. +..+.+++|||..||.++.
T Consensus 3 ~~m~~A~~~A~~s~~~--~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~ 80 (131)
T cd01286 3 YFMAIARLAALRSTCP--RRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAA 80 (131)
T ss_pred HHHHHHHHHHHHcCCC--CCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHh
Confidence 4578889899999886 6899999998766677888854 3467799999999999988
Q ss_pred HhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHC
Q 022046 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 243 ~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
.. |. .+....+... ..||.+|...|.+.+
T Consensus 81 ~~-----~~----~~~~~tLyvT----~ePC~~C~~ai~~~g 109 (131)
T cd01286 81 RH-----GV----SLEGATLYVT----LFPCIECAKLIIQAG 109 (131)
T ss_pred Hc-----CC----CcCCeEEEEe----cCcHHHHHHHHHHhC
Confidence 76 32 2222233221 489999999999887
No 34
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=98.30 E-value=7.7e-06 Score=66.51 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=58.6
Q ss_pred CCCcEEEEEEeCCCCE-EEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHH
Q 022046 201 SKCPSGVAIMDCEGNI-YKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLL 279 (303)
Q Consensus 201 S~~~vgaal~~~dG~i-y~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~ 279 (303)
++++|||+|++.||+| .+|.|-++..++++.|||..||.++.... +. ..++...++.. ..||.+|...
T Consensus 15 ~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~----~~---~~~~~~~ly~t----~EPC~mC~~a 83 (109)
T cd01285 15 GEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRL----GS---YLLSGCTLYTT----LEPCPMCAGA 83 (109)
T ss_pred CCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHh----CC---CccCCeEEEEe----CCChHHHHHH
Confidence 4789999999998997 68999999889999999999999998872 21 23444444432 3699999999
Q ss_pred HHHHCC
Q 022046 280 LQVISP 285 (303)
Q Consensus 280 L~e~~~ 285 (303)
|...+-
T Consensus 84 i~~~gi 89 (109)
T cd01285 84 LLWARI 89 (109)
T ss_pred HHHHCC
Confidence 997763
No 35
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=98.26 E-value=1.4e-05 Score=64.91 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=54.4
Q ss_pred CCCceEEEEEeCCCcE-EEeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEEEEEE--EeCCChhhHHHHHHhh
Q 022046 44 SKFHVGAVGLGSSGRI-FLGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQHLAV--SAAPCGHCRQFLQELR 115 (303)
Q Consensus 44 S~f~VgAavl~~dG~i-y~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~aiav--~~~PCG~CRQ~L~E~~ 115 (303)
++++|||+++++||+| ..|.|-++.... .+.|||..||.++... +...+....+ ..-||.+|...|...+
T Consensus 15 ~~~~vgaviv~~~~~ii~~g~n~~~~~~~--~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC~mC~~ai~~~g 88 (109)
T cd01285 15 GEVPFGAVIVDDDGKVIARGHNRVEQDGD--PTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPMCAGALLWAR 88 (109)
T ss_pred CCCcEEEEEEeCCCEEEEEEeCCCCCCCC--CcccHHHHHHHHHHHHhCCCccCCeEEEEeCCChHHHHHHHHHHC
Confidence 5788999999998996 789999986543 4899999999999776 4333444333 3389999999999764
No 36
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=98.21 E-value=9.8e-06 Score=71.70 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEEeC--------CC--CEEEeEeeccCCCCCCCCHHHHHHHHHHHh------------------CCCCC-
Q 022046 199 PYSKCPSGVAIMDC--------EG--NIYKGSYMESAAYNPSLGPVQAALVAYLAA------------------GGSGG- 249 (303)
Q Consensus 199 PyS~~~vgaal~~~--------dG--~iy~G~nvEnaa~~~slcAEr~Al~~a~~~------------------~~~~~- 249 (303)
.-++-||-+.|+.. +| ..|.|+|.|-+--..|+|+||+||++|.++ +++++
T Consensus 33 rK~~kPVlavLlV~~~~~~~~~~~~~~~~~gvN~EvSmPTGSlCSErNAiG~aLAsdp~l~r~~l~~iavl~~~~~~~~~ 112 (193)
T PF14421_consen 33 RKDRKPVLAVLLVDKNHCEVHGDGRPEFVRGVNYEVSMPTGSLCSERNAIGKALASDPTLRRRDLKMIAVLSVNLTGGGS 112 (193)
T ss_pred hcCCCcEEEEEEEeccccccCCCCCccEEEEEEeEEcCCCcchhHHHHHhhhhhhcCchhhhhhcceeEEEEEeccCCCC
Confidence 34455776666542 23 378999999888888999999999998776 01100
Q ss_pred C--------------CCccceee-EEEEEeC------CCCCcCCcHHHHHHHHHHC---CCCeEEEEeCC
Q 022046 250 G--------------GGGYERIV-AAALVEK------EDAVVRQEHAARLLLQVIS---PKCEFNVFHCG 295 (303)
Q Consensus 250 G--------------~~~~~~i~-~i~~v~~------~~~~~~PCG~CRq~L~e~~---~~~~v~v~~~~ 295 (303)
+ ++..+..+ .+.+-+. +..+..|||+|-+.|..++ |++.|++|+.-
T Consensus 113 ~~~~~~~~~~~~~~~~~~pt~~vR~~~~~g~~~~s~~~~NPL~PCGaC~ewL~KIAe~np~f~v~mFd~t 182 (193)
T PF14421_consen 113 SAVTSPTAVEGADDGGGEPTSPVREVFVHGANLTSPRDPNPLFPCGACKEWLRKIAEANPDFRVYMFDDT 182 (193)
T ss_pred ccccCccccccCcccCCCCCccccceeecccccCCCCCCCCCCcchHHHHHHHHHHHhCCCeEEEEecCC
Confidence 0 00011111 1222111 1136789999999998886 99999998764
No 37
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=98.03 E-value=4.1e-05 Score=67.40 Aligned_cols=88 Identities=24% Similarity=0.240 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCC------------------------------CCCC
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPG------------------------------LPLH 73 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s------------------------------~~~~ 73 (303)
|+..+++|...+.++..+ +.+|||++. .||+|. +|.|--... +...
T Consensus 3 d~~fM~~A~~~A~~s~~~--~~~VGAVIV-~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PHA02588 3 DSTYLQIAYLVSQESKCV--SWKVGAVIE-KNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSK 79 (168)
T ss_pred HHHHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCC
Confidence 345778888888888886 679999877 677765 888742110 0012
Q ss_pred CccChhHHHHHHHHHcCCC-cEEEEEEEeCCChhhHHHHHHhh
Q 022046 74 QSIHAEQFLITNLILNAEP-RLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 74 ~~vCAEr~Ai~~Av~~G~~-~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
.++|||.+||.+|...|.. .=-.++++-.||..|...|...+
T Consensus 80 ~~~HAE~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~g 122 (168)
T PHA02588 80 NEIHAELNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSG 122 (168)
T ss_pred CCccHHHHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhC
Confidence 3799999999998776542 11334555599999999999874
No 38
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=97.85 E-value=0.00017 Score=62.42 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=63.9
Q ss_pred ChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCC-------------CCCccChhHHHHHHHHH
Q 022046 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLP-------------LHQSIHAEQFLITNLIL 88 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~-------------~~~~vCAEr~Ai~~Av~ 88 (303)
+-|+..+.+|...+.++..| +.+|||++. .||++. +|.|-...... ...++|||.+||.++..
T Consensus 4 ~~d~~fM~~A~~~A~rs~~~--~~~VGAVIV-~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~ 80 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRSTCT--RLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80 (151)
T ss_pred cHHHHHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHh
Confidence 34566788888888888776 679999877 567654 48887643320 01369999999999876
Q ss_pred cCCC-cEEEEEEEeCCChhhHHHHHHhh
Q 022046 89 NAEP-RLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 89 ~G~~-~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
.|.. .=..+++...||-+|-..|...+
T Consensus 81 ~~~~l~g~tlYvT~ePC~~Ca~ai~~ag 108 (151)
T TIGR02571 81 FGVSTEGAEIYVTHFPCLQCTKSIIQAG 108 (151)
T ss_pred cCCCcCCcEEEEeCCCcHHHHHHHHHhC
Confidence 6532 22334555589999999999864
No 39
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=97.62 E-value=0.0009 Score=58.93 Aligned_cols=87 Identities=14% Similarity=0.044 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccC--------------------------------CCCC
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESA--------------------------------AYNP 229 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEna--------------------------------a~~~ 229 (303)
+..++.|+..+.+|..+ ..+|||+|+ +||+|. +|.|=-.. ....
T Consensus 4 ~~fM~~A~~~A~~s~~~--~~~VGAVIV-~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 4 STYLQIAYLVSQESKCV--SWKVGAVIE-KNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred HHHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 35788999999999876 569999888 678866 78873110 1256
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCC
Q 022046 230 SLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285 (303)
Q Consensus 230 slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~ 285 (303)
+++||..||.++... |. .++...++.. ..||.+|...|...+.
T Consensus 81 ~~HAE~nAi~~a~~~-----~~----~~~g~tLYvT----lePC~~Ca~aI~~~gI 123 (168)
T PHA02588 81 EIHAELNAILFAARN-----GI----SIEGATMYVT----ASPCPDCAKAIAQSGI 123 (168)
T ss_pred CccHHHHHHHHHhhc-----CC----CCCCcEEEEe----CCCcHHHHHHHHHhCC
Confidence 899999999988776 32 2333333321 4899999999998873
No 40
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=97.55 E-value=0.0011 Score=57.49 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCC---------------CCCCCCHHHHHHHHHHHhCCC
Q 022046 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAA---------------YNPSLGPVQAALVAYLAAGGS 247 (303)
Q Consensus 184 ~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa---------------~~~slcAEr~Al~~a~~~~~~ 247 (303)
..+..|+..+++|..| +.+|||+|. +||+|. +|.|-.... +..+++||..||.++...
T Consensus 8 ~fM~~A~~~A~rs~~~--~~~VGAVIV-~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~--- 81 (151)
T TIGR02571 8 YFMAQSHLLALRSTCT--RLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKF--- 81 (151)
T ss_pred HHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhc---
Confidence 5588899999998776 569999887 577765 588875332 246899999999998766
Q ss_pred CCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHC
Q 022046 248 GGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 248 ~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
|. .++...+... ..||-+|-..|...+
T Consensus 82 --~~----~l~g~tlYvT----~ePC~~Ca~ai~~ag 108 (151)
T TIGR02571 82 --GV----STEGAEIYVT----HFPCLQCTKSIIQAG 108 (151)
T ss_pred --CC----CcCCcEEEEe----CCCcHHHHHHHHHhC
Confidence 32 2333333321 489999999999886
No 41
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=97.18 E-value=0.005 Score=54.44 Aligned_cols=87 Identities=24% Similarity=0.187 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCc-EEEeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEE--EEEEE
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGR-IFLGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQ--HLAVS 100 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~-iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~--aiav~ 100 (303)
++.++++|.+.+++++.. .+++|||++.. +|+ +-.|.|-....- ..+.|||..||.+|... +...+. .+++.
T Consensus 13 ~~~~m~~A~~~A~~a~~~-g~~pvGAVIV~-~g~IIa~g~N~~~~~~--d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~T 88 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDE-REVPVGAVLVH-NNRVIGEGWNRPIGRH--DPTAHAEIMALRQGGLVLQNYRLLDATLYVT 88 (172)
T ss_pred HHHHHHHHHHHHHHhhcc-CCCCEEEEEEe-CCEEEEEeeCCCCCCC--CCccCHHHHHHHHHHHhcCCCCcCCcEEEee
Confidence 345677777777777764 57899998885 677 445777543221 24789999999988653 333332 33444
Q ss_pred eCCChhhHHHHHHhh
Q 022046 101 AAPCGHCRQFLQELR 115 (303)
Q Consensus 101 ~~PCG~CRQ~L~E~~ 115 (303)
.-||-+|--.|...+
T Consensus 89 lEPC~MC~~aii~ag 103 (172)
T PRK10860 89 LEPCVMCAGAMVHSR 103 (172)
T ss_pred CCCcHHHHHHHHHhC
Confidence 489999999999875
No 42
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=97.17 E-value=0.0056 Score=50.66 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=48.4
Q ss_pred CCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEeCCC------hhhHHHHHHhh
Q 022046 44 SKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPC------GHCRQFLQELR 115 (303)
Q Consensus 44 S~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~~PC------G~CRQ~L~E~~ 115 (303)
.+++|||++..+||+|. .|.|-.. + +.|||..||.++-...-+. -.+++.--|| .+|-..|.+.+
T Consensus 17 ~~~pvGaviv~~~g~iv~~g~n~~~---~---~~HAE~~ai~~a~~~~l~g-~tly~TlEPC~~~~~~~mC~~ai~~~g 88 (115)
T cd01284 17 PNPPVGCVIVDDDGEIVGEGYHRKA---G---GPHAEVNALASAGEKLARG-ATLYVTLEPCSHHGKTPPCVDAIIEAG 88 (115)
T ss_pred CCCCEEEEEEeCCCeEEEEecCCCC---C---cccHHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCchHHHHHHHHHC
Confidence 36789999999889855 4888764 2 7899999999987641111 2344444899 79999999975
No 43
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=97.05 E-value=0.0096 Score=52.65 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+..++.|++.+++++.. .+.||||+|.. +|+|. .|.|-......++.|||..||-++...+ +. .++....
T Consensus 14 ~~~m~~A~~~A~~a~~~-g~~pvGAVIV~-~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~----~~---~~l~g~t 84 (172)
T PRK10860 14 EYWMRHALTLAKRAWDE-REVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL----QN---YRLLDAT 84 (172)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCEEEEEEe-CCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhc----CC---CCcCCcE
Confidence 35678888888888764 46899999886 67754 7888766666789999999999887652 21 1233333
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHC
Q 022046 262 LVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
++.. .-||.+|-..|...+
T Consensus 85 lY~T----lEPC~MC~~aii~ag 103 (172)
T PRK10860 85 LYVT----LEPCVMCAGAMVHSR 103 (172)
T ss_pred EEee----CCCcHHHHHHHHHhC
Confidence 3321 479999999998887
No 44
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=97.00 E-value=0.0077 Score=49.84 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHHHHhcC--CCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEE
Q 022046 187 YAALEAANKS--HAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALV 263 (303)
Q Consensus 187 ~~A~~a~~~s--yaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v 263 (303)
+.|++.++++ ... .+.||||+|+..||+|. .|.|-.. ++.+||..||-++... .++...++
T Consensus 2 ~~al~~A~~~~~~~~-~~~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~a~~~-----------~l~g~tly 65 (115)
T cd01284 2 RRALELAEKGRGLTS-PNPPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALASAGEK-----------LARGATLY 65 (115)
T ss_pred HHHHHHHHhcccccC-CCCCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHHHhhc-----------CCCCeEEE
Confidence 3455666655 321 36799999999889965 5777764 7899999999987663 11122222
Q ss_pred eCCCCCcCCc------HHHHHHHHHHCC
Q 022046 264 EKEDAVVRQE------HAARLLLQVISP 285 (303)
Q Consensus 264 ~~~~~~~~PC------G~CRq~L~e~~~ 285 (303)
. -.-|| .+|-..|...+.
T Consensus 66 ~----TlEPC~~~~~~~mC~~ai~~~gi 89 (115)
T cd01284 66 V----TLEPCSHHGKTPPCVDAIIEAGI 89 (115)
T ss_pred E----eCCCCCCCCCchHHHHHHHHHCc
Confidence 2 13699 799999999983
No 45
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.02 Score=49.52 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
...+++|++.+++++ -..+.|+||+|+..+|+|. .|.|--+..-+++-|||-.||-++...+ |. + ..+...
T Consensus 9 ~~~m~~al~~A~~a~-~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~----~~--~-~l~~~t 80 (152)
T COG0590 9 EDFMREALKEAKKAG-DEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETL----GN--Y-RLKDCT 80 (152)
T ss_pred HHHHHHHHHHHHHHH-hcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhh----CC--C-CcCCcE
Confidence 356777888888777 5668899999999888654 5888777777899999999999988873 22 1 233322
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHCCCCeEEE
Q 022046 262 LVEKEDAVVRQEHAARLLLQVISPKCEFNV 291 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v 291 (303)
++. -..||-+|---|.--..+--++.
T Consensus 81 lyv----T~EPC~MCagAi~~ari~rvvyg 106 (152)
T COG0590 81 LYV----TLEPCPMCAGAIIWARIDRVVYG 106 (152)
T ss_pred EEE----ecCCHHHHHHHHHHhCCCeEEEe
Confidence 222 14799999998886664333333
No 46
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0072 Score=52.35 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=62.6
Q ss_pred ChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEE-eeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEE--EEE
Q 022046 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL-GGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQ--HLA 98 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~-G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~--aia 98 (303)
..+...++.|.+.+..++ -..+.+|||+++..+|++.. |.|--+..- ..+-|||-.||-+|-.. |..+++ .++
T Consensus 6 ~~~~~~m~~al~~A~~a~-~~ge~PvGaviV~~~~~ii~~~~N~~~~~~--dptaHAEi~air~a~~~~~~~~l~~~tly 82 (152)
T COG0590 6 EKDEDFMREALKEAKKAG-DEGEVPVGAVIVDADGEIIARGHNRREEDN--DPTAHAEILAIRAAAETLGNYRLKDCTLY 82 (152)
T ss_pred hhhHHHHHHHHHHHHHHH-hcCCCCEEEEEEcCCCCEEEEecCccccCC--CccccHHHHHHHHHHHhhCCCCcCCcEEE
Confidence 345556666666666777 56688999999998886554 666554332 34789999999988655 443333 334
Q ss_pred EEeCCChhhHHHHHHhh
Q 022046 99 VSAAPCGHCRQFLQELR 115 (303)
Q Consensus 99 v~~~PCG~CRQ~L~E~~ 115 (303)
++.-||-+|--.|..-+
T Consensus 83 vT~EPC~MCagAi~~ar 99 (152)
T COG0590 83 VTLEPCPMCAGAIIWAR 99 (152)
T ss_pred EecCCHHHHHHHHHHhC
Confidence 44489999999998764
No 47
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.014 Score=51.37 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-Eeeec---------------CC---CC--CCCCCccChhHHH
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNV---------------EF---PG--LPLHQSIHAEQFL 82 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~Nv---------------E~---~s--~~~~~~vCAEr~A 82 (303)
-|+--++.|.-++.++-+| +-+|||+++- ||+|. +|.|= +. .+ .-.-.++|||++|
T Consensus 8 wdeyfm~~A~l~a~Rstc~--r~~VGAvIvk-d~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NA 84 (164)
T COG2131 8 WDEYFMAIAELVALRSTCP--RRQVGAVIVK-DGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNA 84 (164)
T ss_pred HHHHHHHHHHHHHHHccCc--ccceeEEEEe-CCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHH
Confidence 3555667788888999997 4579999888 77754 44432 11 00 0012379999999
Q ss_pred HHHHHHcCCC-cEEEEEEEeCCChhhHHHHHHhh
Q 022046 83 ITNLILNAEP-RLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 83 i~~Av~~G~~-~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
|.++...|.. +=..++|...||=.|--.|-+-+
T Consensus 85 il~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aG 118 (164)
T COG2131 85 ILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAG 118 (164)
T ss_pred HHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhC
Confidence 9999999876 33455666689999988887753
No 48
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=96.31 E-value=0.018 Score=48.29 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=45.8
Q ss_pred ceEEEEEeCCCcEEEeeecCCC---------------------CCC-CCCccChhHHHHHHHHHc---------CCCcEE
Q 022046 47 HVGAVGLGSSGRIFLGGNVEFP---------------------GLP-LHQSIHAEQFLITNLILN---------AEPRLQ 95 (303)
Q Consensus 47 ~VgAavl~~dG~iy~G~NvE~~---------------------s~~-~~~~vCAEr~Ai~~Av~~---------G~~~i~ 95 (303)
.+++++....|++|+|.|--.. ++. ++.+-|||-.||.+++.. |.+ +.
T Consensus 16 ~~a~~l~~~tG~~~~g~n~~~~~~~~~lHP~v~~~ld~~~~~~~~~~~~~G~cAEv~avn~~L~~~d~~~~~~~~a~-~~ 94 (125)
T PF14431_consen 16 AVAAALDVRTGKIYTGTNGKGDDSPPDLHPLVQDRLDNLPSEESRERFGAGRCAEVIAVNDALWARDAARRSLEGAK-IT 94 (125)
T ss_pred ceEEEEEecCCcEEEEECCCCCCCccccCHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHhhhcccccccccc-ce
Confidence 3555555566999999997422 111 136899999999999886 322 22
Q ss_pred EEEEEe----------CCChhhHHHHHHhh
Q 022046 96 HLAVSA----------APCGHCRQFLQELR 115 (303)
Q Consensus 96 aiav~~----------~PCG~CRQ~L~E~~ 115 (303)
...|-. +||-.|..+|..|+
T Consensus 95 ~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~ 124 (125)
T PF14431_consen 95 TRRIREPGDPEHGKYAPPCRNCAALLKHFG 124 (125)
T ss_pred eeeeecccCCCCCCCCCCCchHHHHHhhcC
Confidence 222211 89999999998874
No 49
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=96.24 E-value=0.03 Score=46.93 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCEEEeEeeccC------------------------CCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 205 SGVAIMDCEGNIYKGSYMESA------------------------AYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 205 vgaal~~~dG~iy~G~nvEna------------------------a~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+++++...+|++|+|.|--.. .|+.+-|||-.||.+++.+...-.+..+..++...
T Consensus 17 ~a~~l~~~tG~~~~g~n~~~~~~~~~lHP~v~~~ld~~~~~~~~~~~~~G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~ 96 (125)
T PF14431_consen 17 VAAALDVRTGKIYTGTNGKGDDSPPDLHPLVQDRLDNLPSEESRERFGAGRCAEVIAVNDALWARDAARRSLEGAKITTR 96 (125)
T ss_pred eEEEEEecCCcEEEEECCCCCCCccccCHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHhhhccccccccccceee
Confidence 556656666999999997532 26789999999999999861000000001233333
Q ss_pred EEEe----CCCCCcCCcHHHHHHHHHHC
Q 022046 261 ALVE----KEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 261 ~~v~----~~~~~~~PCG~CRq~L~e~~ 284 (303)
.+-+ ..+.+..||-.|..+|..|+
T Consensus 97 ~ir~~~~~~~G~~~~pC~nC~~~l~~~~ 124 (125)
T PF14431_consen 97 RIREPGDPEHGKYAPPCRNCAALLKHFG 124 (125)
T ss_pred eeecccCCCCCCCCCCCchHHHHHhhcC
Confidence 3333 12356789999999999875
No 50
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=96.05 E-value=0.071 Score=52.75 Aligned_cols=83 Identities=25% Similarity=0.176 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHhhcCCCCC-CCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe
Q 022046 24 VLQLLPTLVKSAQTLARPPIS-KFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS-~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~ 101 (303)
.|+..+++|.+.+++++.--+ +.+|||++.. ||+|. .|.|-.. .+.|||..||.+|-..-.. -.++|.-
T Consensus 31 ~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~-~g~Ii~~g~n~~~------g~~HAEi~Ai~~a~~~~~g--~tlyvTL 101 (380)
T PLN02807 31 DDSFYMRRCVELARKAIGCTSPNPMVGCVIVK-DGRIVGEGFHPKA------GQPHAEVFALRDAGDLAEN--ATAYVSL 101 (380)
T ss_pred hHHHHHHHHHHHHHhhcccCCCCCCEEEEEEE-CCEEEEEEeCCCC------CCcCHHHHHHHHhhhhcCC--cEEEEEc
Confidence 455677888887777654323 5679998874 69866 6888542 1589999999987543111 2344444
Q ss_pred CCC------hhhHHHHHHhh
Q 022046 102 APC------GHCRQFLQELR 115 (303)
Q Consensus 102 ~PC------G~CRQ~L~E~~ 115 (303)
-|| .+|-+.|.+.+
T Consensus 102 EPC~h~Gktp~C~~aii~ag 121 (380)
T PLN02807 102 EPCNHYGRTPPCTEALIKAK 121 (380)
T ss_pred CCCcCCCCChHHHHHHHHhC
Confidence 899 79999999875
No 51
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.11 Score=45.99 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCcEEEEEEeCCCC-EEEeEeeccCCCCCCCCHHHHHHHH---HHHhCCCCCCCCcccee
Q 022046 183 ERLKYAALEAANKSHAPYS-KCPSGVAIMDCEGN-IYKGSYMESAAYNPSLGPVQAALVA---YLAAGGSGGGGGGYERI 257 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS-~~~vgaal~~~dG~-iy~G~nvEnaa~~~slcAEr~Al~~---a~~~~~~~~G~~~~~~i 257 (303)
.+....|.+.+.+++ |+. +.|+|+.++..||+ +..|-|.=|..+.++.+||..||.. |..++ +. ..+
T Consensus 12 ~~~m~~a~eea~ka~-d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~----~~---~~l 83 (169)
T KOG1018|consen 12 IAFMVEAVEEAKKAL-DEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSL----RT---IDL 83 (169)
T ss_pred HHHHHHHHHHHHhhc-cCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhc----Cc---eec
Confidence 466778888888886 677 89999999996666 6688888888899999999999999 77662 11 122
Q ss_pred eEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEeC
Q 022046 258 VAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFHC 294 (303)
Q Consensus 258 ~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~~ 294 (303)
+...++. .+.||-+|--.|...+ ++.+++..
T Consensus 84 s~~tlyv----t~ePc~mC~gal~~~g--v~~vv~G~ 114 (169)
T KOG1018|consen 84 SETTLYV----TCEPCPMCAGALAQSG--VKRVVFGA 114 (169)
T ss_pred cCCEEEE----EecccHHHHHHHHHcC--CCEEEEec
Confidence 3222221 2468999999988876 44555544
No 52
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.17 Score=44.54 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=61.8
Q ss_pred hHHHH-HHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEe-Ee---------------ecc-------CCCCCCCCHHHH
Q 022046 181 PKERL-KYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKG-SY---------------MES-------AAYNPSLGPVQA 236 (303)
Q Consensus 181 ~~~~l-~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G-~n---------------vEn-------aa~~~slcAEr~ 236 (303)
.|+++ ++.|.-++.||=+| +-.|||+++. ||+|... -| .+. -.+.-+++||++
T Consensus 7 ~wdeyfm~~A~l~a~Rstc~--r~~VGAvIvk-d~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~N 83 (164)
T COG2131 7 MWDEYFMAIAELVALRSTCP--RRQVGAVIVK-DGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQN 83 (164)
T ss_pred HHHHHHHHHHHHHHHHccCc--ccceeEEEEe-CCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHH
Confidence 36664 45677778888886 4579999888 8887633 22 222 123346899999
Q ss_pred HHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEe
Q 022046 237 ALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293 (303)
Q Consensus 237 Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~ 293 (303)
||.++..+ |. .++...++. -..||-.|--.|-+-+ ++-+++.
T Consensus 84 Ail~aa~~-----g~----~~~~atlYv----t~~PC~~Cak~Ii~aG--Ik~Vvy~ 125 (164)
T COG2131 84 AILQAARH-----GV----GLEGATLYV----THFPCSNCAKLIIQAG--IKEVVYA 125 (164)
T ss_pred HHHHHHhc-----CC----CCCCcEEEE----EecccHHHHHHHHHhC--ceEEEee
Confidence 99999999 53 223333332 1479999988887765 4444443
No 53
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=95.43 E-value=0.12 Score=50.03 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=50.3
Q ss_pred HHHHHHhhcCCC-CCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEeCCC----
Q 022046 31 LVKSAQTLARPP-ISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPC---- 104 (303)
Q Consensus 31 ~A~~a~~~ay~P-yS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~~PC---- 104 (303)
+|.+.++++... .-+.+|||++.. ||++. +|.|--. .+.|||..||.+|-..- +. -.++++--||
T Consensus 3 ~a~~~a~~~~~~~~~~~~vGaviv~-~~~ii~~g~n~~~------~~~HAE~~ai~~a~~~~-~g-~tlyvtlEPC~~~g 73 (344)
T TIGR00326 3 RALDLAKKGQGTTHPNPLVGCVIVK-NGEIVGEGAHQKA------GEPHAEVHALRQAGENA-KG-ATAYVTLEPCSHQG 73 (344)
T ss_pred HHHHHHHhcCCCCCCCCCEEEEEEe-CCEEEEEeeCCCC------CCCCHHHHHHHHhcccc-CC-cEEEEeCCCCCCCC
Confidence 344444444432 236789999887 88854 4888632 27899999999885421 11 2344444899
Q ss_pred --hhhHHHHHHhh
Q 022046 105 --GHCRQFLQELR 115 (303)
Q Consensus 105 --G~CRQ~L~E~~ 115 (303)
++|-..|.+.+
T Consensus 74 ~~~~C~~ai~~~g 86 (344)
T TIGR00326 74 RTPPCAEAIIEAG 86 (344)
T ss_pred CCcHHHHHHHHcC
Confidence 78999999875
No 54
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=95.26 E-value=0.091 Score=45.43 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=56.2
Q ss_pred eEEEEEeCCCcEEEeeecCCCC-----C-------------------CCCCccChhHHHHHHHHHcCCC--cEEEEEEEe
Q 022046 48 VGAVGLGSSGRIFLGGNVEFPG-----L-------------------PLHQSIHAEQFLITNLILNAEP--RLQHLAVSA 101 (303)
Q Consensus 48 VgAavl~~dG~iy~G~NvE~~s-----~-------------------~~~~~vCAEr~Ai~~Av~~G~~--~i~aiav~~ 101 (303)
.-.|..--+|++|+|+|--.-. . +.-...|||-.||-+|.-.|.+ +...+.|-.
T Consensus 29 ~tvA~~~I~G~~f~gvN~~~rp~ad~n~p~~~~dri~~~~~~~~~pn~~~~~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr 108 (146)
T PF14437_consen 29 GTVAEGEINGQKFFGVNSTARPIADPNLPTLIRDRIAAKIPGKPGPNNNMAKAHAEAGAIQQAYDAGKTVGRSMTMYVDR 108 (146)
T ss_pred ceEEEEEECCeEEEeeCCCCcccCCCCCcceeccccccccccccCccchhHHHHHHHHHHHHHHHhcCccCCeEEEEECc
Confidence 3355566789999999986420 0 0113679999999999998876 445555556
Q ss_pred CCChhhHHHHHHhhCC---CccEEEEecCCCc
Q 022046 102 APCGHCRQFLQELRNT---SDINICITSINSN 130 (303)
Q Consensus 102 ~PCG~CRQ~L~E~~~~---~~~~V~~~~~~~~ 130 (303)
.+|+.||+-|..+... +.+.|+-.+ +|.
T Consensus 109 ~vC~~C~~~i~~~a~~lGl~~L~I~~~~-sG~ 139 (146)
T PF14437_consen 109 DVCGYCGGDIPSMAEKLGLKSLTIHEPD-SGK 139 (146)
T ss_pred ccchHHHHHHHHHHHHcCCCeEEEEecC-CCc
Confidence 9999999999887632 344444432 454
No 55
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=95.04 E-value=0.3 Score=42.24 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHHhh-cCCCCCCCceEEEEEeCCCcE-EEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe
Q 022046 24 VLQLLPTLVKSAQTL-ARPPISKFHVGAVGLGSSGRI-FLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~-ay~PyS~f~VgAavl~~dG~i-y~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~ 101 (303)
.|+..+++|.+.+.+ .+.-+.|+.|||+++.++ +| =.|.... + ..-|||..||.+| |+.-=-+.+.+.
T Consensus 5 ~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~-~Ivg~G~h~~-a-----G~pHAEv~Al~~a---g~~a~Gat~yVT 74 (146)
T COG0117 5 LDERYMERALELAEKGQGTTSPNPSVGCVIVKDG-EIVGEGYHEK-A-----GGPHAEVCALRMA---GEAARGATAYVT 74 (146)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECC-EEEeeeecCC-C-----CCCcHHHHHHHHc---CcccCCCEEEEE
Confidence 355666777666655 667688999999988776 43 3455544 2 2789999999887 443222334443
Q ss_pred -CCChh------hHHHHHHhh
Q 022046 102 -APCGH------CRQFLQELR 115 (303)
Q Consensus 102 -~PCG~------CRQ~L~E~~ 115 (303)
-||-| |-..|-+-+
T Consensus 75 LEPCsH~GrTPPC~~ali~ag 95 (146)
T COG0117 75 LEPCSHYGRTPPCADALIKAG 95 (146)
T ss_pred ecCcccCCCCcchHHHHHHhC
Confidence 34422 568887764
No 56
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=94.80 E-value=0.35 Score=47.52 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhhcCC-CCCCCceEEEEEeCCCc-EEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEeCC
Q 022046 26 QLLPTLVKSAQTLARP-PISKFHVGAVGLGSSGR-IFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAP 103 (303)
Q Consensus 26 ~~L~~~A~~a~~~ay~-PyS~f~VgAavl~~dG~-iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~~P 103 (303)
+..+++|.+.++++.- -.-+.+|||++. +||+ +-+|.|... + +.|||..||.+|-..-. . -.++++--|
T Consensus 4 ~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~-----g-~~HAE~~ai~~a~~~~~-g-~tlyvTlEP 74 (367)
T PRK10786 4 EFYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRA-----G-EPHAEVHALRMAGEKAK-G-ATAYVTLEP 74 (367)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCCEEEEEE-eCCEEEEEEeCCCC-----C-CCCHHHHHHHHHhhhcC-C-CEEEEecCC
Confidence 4456777777767653 234788999888 4777 567888653 1 58999999999854211 1 234555589
Q ss_pred C------hhhHHHHHHhh
Q 022046 104 C------GHCRQFLQELR 115 (303)
Q Consensus 104 C------G~CRQ~L~E~~ 115 (303)
| .+|-+.|...+
T Consensus 75 C~~~g~t~mC~~aii~ag 92 (367)
T PRK10786 75 CSHHGRTPPCCDALIAAG 92 (367)
T ss_pred ccCCCCChHHHHHHHHhC
Confidence 9 79999999875
No 57
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.2 Score=46.02 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=60.1
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEE-eee---------------------cCCCCCCCCCccChhHH
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFL-GGN---------------------VEFPGLPLHQSIHAEQF 81 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~-G~N---------------------vE~~s~~~~~~vCAEr~ 81 (303)
=|+-.+..|.-++.|+-.| +-+|||++.+.+++|+. |-| -++ -|. ..+|||.+
T Consensus 66 wd~yFM~iA~LsA~RSkDp--ntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~-k~~--yv~HAE~N 140 (230)
T KOG3127|consen 66 WDDYFMAIAFLSAKRSKDP--NTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDL-KYC--YVVHAEEN 140 (230)
T ss_pred HHHHHHHHHHHHHHhccCc--ccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCc-ceE--EEeehHHH
Confidence 3455667788888999888 55799999999988642 222 111 122 37999999
Q ss_pred HHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhh
Q 022046 82 LITNLILNAEPRLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 82 Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
||.++-..-.+. -.+++.--||--|-+.|-+++
T Consensus 141 Ai~~~~~~~~~~-~~lYvtl~PC~~Ca~liiq~G 173 (230)
T KOG3127|consen 141 AILNKGRERVGG-CSLYVTLCPCNECAKLIIQAG 173 (230)
T ss_pred HHHHhCccccCC-ceEEEeecchHHHHHHHHHhh
Confidence 998864332222 445555589999999999986
No 58
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=93.61 E-value=0.39 Score=46.58 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEe
Q 022046 187 YAALEAANKSHAP-YSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVE 264 (303)
Q Consensus 187 ~~A~~a~~~syaP-yS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~ 264 (303)
++|++.++++... .-+.+|||+|.. ||+|. +|.|-. ..+.|||..||-+|-.. ++...++.
T Consensus 2 ~~a~~~a~~~~~~~~~~~~vGaviv~-~~~ii~~g~n~~----~~~~HAE~~ai~~a~~~------------~~g~tlyv 64 (344)
T TIGR00326 2 NRALDLAKKGQGTTHPNPLVGCVIVK-NGEIVGEGAHQK----AGEPHAEVHALRQAGEN------------AKGATAYV 64 (344)
T ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEe-CCEEEEEeeCCC----CCCCCHHHHHHHHhccc------------cCCcEEEE
Confidence 4566666665542 235689999887 88865 577753 25789999999886443 11112221
Q ss_pred CCCCCcCCc------HHHHHHHHHHC
Q 022046 265 KEDAVVRQE------HAARLLLQVIS 284 (303)
Q Consensus 265 ~~~~~~~PC------G~CRq~L~e~~ 284 (303)
-.-|| ++|-..|.+.+
T Consensus 65 ----tlEPC~~~g~~~~C~~ai~~~g 86 (344)
T TIGR00326 65 ----TLEPCSHQGRTPPCAEAIIEAG 86 (344)
T ss_pred ----eCCCCCCCCCCcHHHHHHHHcC
Confidence 14699 79999999887
No 59
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=93.56 E-value=0.69 Score=45.85 Aligned_cols=81 Identities=20% Similarity=0.057 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHAPYS-KCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS-~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+..++.|++.+++++.--+ +.+|||+|+. ||+|. .|.|-.. .+.|||..||-+|-..+ . .+.
T Consensus 33 ~~~M~~Al~lA~~~~~~~~~np~VGaViV~-~g~Ii~~g~n~~~----g~~HAEi~Ai~~a~~~~---------~--g~t 96 (380)
T PLN02807 33 SFYMRRCVELARKAIGCTSPNPMVGCVIVK-DGRIVGEGFHPKA----GQPHAEVFALRDAGDLA---------E--NAT 96 (380)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCEEEEEEE-CCEEEEEEeCCCC----CCcCHHHHHHHHhhhhc---------C--CcE
Confidence 4678899998888753222 4569998874 78866 6887542 35799999998864431 0 111
Q ss_pred EEEeCCCCCcCCc------HHHHHHHHHHC
Q 022046 261 ALVEKEDAVVRQE------HAARLLLQVIS 284 (303)
Q Consensus 261 ~~v~~~~~~~~PC------G~CRq~L~e~~ 284 (303)
+.++ ..|| .+|-+.|.+.+
T Consensus 97 lyvT-----LEPC~h~Gktp~C~~aii~ag 121 (380)
T PLN02807 97 AYVS-----LEPCNHYGRTPPCTEALIKAK 121 (380)
T ss_pred EEEE-----cCCCcCCCCChHHHHHHHHhC
Confidence 2222 3689 79999999987
No 60
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=92.65 E-value=1 Score=44.33 Aligned_cols=81 Identities=19% Similarity=0.070 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCcEEEEEEeCCCCE-EEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHA-PYSKCPSGVAIMDCEGNI-YKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~sya-PyS~~~vgaal~~~dG~i-y~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+..++.|++.++++.- -..+.+|||+|. +||+| -+|.|..+ .+.|||..||.++-..+ .|. .+
T Consensus 4 ~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~----g~~HAE~~ai~~a~~~~---~g~-------tl 68 (367)
T PRK10786 4 EFYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRA----GEPHAEVHALRMAGEKA---KGA-------TA 68 (367)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCCEEEEEE-eCCEEEEEEeCCCC----CCCCHHHHHHHHHhhhc---CCC-------EE
Confidence 4567888888888753 233678999888 47874 47888663 34899999999975541 011 11
Q ss_pred EEEeCCCCCcCCc------HHHHHHHHHHC
Q 022046 261 ALVEKEDAVVRQE------HAARLLLQVIS 284 (303)
Q Consensus 261 ~~v~~~~~~~~PC------G~CRq~L~e~~ 284 (303)
+ ++ ..|| .+|...|...+
T Consensus 69 y-vT-----lEPC~~~g~t~mC~~aii~ag 92 (367)
T PRK10786 69 Y-VT-----LEPCSHHGRTPPCCDALIAAG 92 (367)
T ss_pred E-Ee-----cCCccCCCCChHHHHHHHHhC
Confidence 2 21 4799 79999999887
No 61
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=92.44 E-value=0.63 Score=41.19 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhcCCCCC-CCceEEEEEeCCCc-EEEeeecCCCCCCCCCccChhHHHHHH---HHHc-CCCcEEE--EE
Q 022046 27 LLPTLVKSAQTLARPPIS-KFHVGAVGLGSSGR-IFLGGNVEFPGLPLHQSIHAEQFLITN---LILN-AEPRLQH--LA 98 (303)
Q Consensus 27 ~L~~~A~~a~~~ay~PyS-~f~VgAavl~~dG~-iy~G~NvE~~s~~~~~~vCAEr~Ai~~---Av~~-G~~~i~a--ia 98 (303)
+-...|.+-+.+++. +. +++|||+++..||+ +..|=|.-|..+. .+.|||..||.+ |... +...++. ++
T Consensus 13 ~~m~~a~eea~ka~d-~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d--~t~HaE~~~I~~~~~~~~~~~~~~ls~~tly 89 (169)
T KOG1018|consen 13 AFMVEAVEEAKKALD-EGDEVPVGAVLVHMDGKVLASGGNMVNEKKD--PTAHAEVIAIREEEVMCKSLRTIDLSETTLY 89 (169)
T ss_pred HHHHHHHHHHHhhcc-CCCCCceEEEEEeCCCeEEecccceecccCC--cchhhHHHHHhhHHHHhhhcCceeccCCEEE
Confidence 344555555666665 45 89999999996665 6777777555443 499999999998 6544 3333333 33
Q ss_pred EEeCCChhhHHHHHHhh
Q 022046 99 VSAAPCGHCRQFLQELR 115 (303)
Q Consensus 99 v~~~PCG~CRQ~L~E~~ 115 (303)
++.-||-+|--.|...+
T Consensus 90 vt~ePc~mC~gal~~~g 106 (169)
T KOG1018|consen 90 VTCEPCPMCAGALAQSG 106 (169)
T ss_pred EEecccHHHHHHHHHcC
Confidence 44489999999998774
No 62
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=89.08 E-value=5.9 Score=34.35 Aligned_cols=97 Identities=19% Similarity=0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhc-CCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANK-SHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~-syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+..++.|++.+++ .+.-+.+++|||.|+..+ +|. .|+..+ .-.-+||..||.++--. . +.-...
T Consensus 7 ~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~-~Ivg~G~h~~----aG~pHAEv~Al~~ag~~------a---~Gat~y 72 (146)
T COG0117 7 ERYMERALELAEKGQGTTSPNPSVGCVIVKDG-EIVGEGYHEK----AGGPHAEVCALRMAGEA------A---RGATAY 72 (146)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCceeEEEEECC-EEEeeeecCC----CCCCcHHHHHHHHcCcc------c---CCCEEE
Confidence 5788999998887 566678899999888755 655 555554 35679999999886222 1 111222
Q ss_pred EEEeCCCC--CcCCcHHHHHHHHHHCCCCeEEEEeCCCc
Q 022046 261 ALVEKEDA--VVRQEHAARLLLQVISPKCEFNVFHCGCK 297 (303)
Q Consensus 261 ~~v~~~~~--~~~PCG~CRq~L~e~~~~~~v~v~~~~~~ 297 (303)
+..++=.+ -.+| |-..|-+-+. ..|++...|-+
T Consensus 73 VTLEPCsH~GrTPP---C~~ali~agi-~rVvva~~DPn 107 (146)
T COG0117 73 VTLEPCSHYGRTPP---CADALIKAGV-ARVVVAMLDPN 107 (146)
T ss_pred EEecCcccCCCCcc---hHHHHHHhCC-CEEEEEecCCC
Confidence 33333222 2456 5677766662 34556555543
No 63
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=88.88 E-value=1.4 Score=40.67 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEee--------------------ccCCCCCCCCHHHHHHHHHH
Q 022046 184 RLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYM--------------------ESAAYNPSLGPVQAALVAYL 242 (303)
Q Consensus 184 ~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nv--------------------Enaa~~~slcAEr~Al~~a~ 242 (303)
-.+..|.-+++||-.|- .+|||++++.+++|. +|-|- +..-|-..+|||+.||.+.-
T Consensus 69 yFM~iA~LsA~RSkDpn--tqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~NAi~~~~ 146 (230)
T KOG3127|consen 69 YFMAIAFLSAKRSKDPN--TQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEENAILNKG 146 (230)
T ss_pred HHHHHHHHHHHhccCcc--cceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHHHHHHHhC
Confidence 45667888889988774 579999999999876 23221 12334567899999987754
Q ss_pred HhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHC
Q 022046 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 243 ~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
.. -- .. ..+-+ ..-||--|-++|-+++
T Consensus 147 ~~-----~~---~~--~~lYv-----tl~PC~~Ca~liiq~G 173 (230)
T KOG3127|consen 147 RE-----RV---GG--CSLYV-----TLCPCNECAKLIIQAG 173 (230)
T ss_pred cc-----cc---CC--ceEEE-----eecchHHHHHHHHHhh
Confidence 43 00 11 11212 1379999999999998
No 64
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=87.96 E-value=3 Score=36.16 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=52.3
Q ss_pred cEEEEEEeCCCCEEEeEeeccCC-----------C---------------CCCCCHHHHHHHHHHHhCCCCCCCCcccee
Q 022046 204 PSGVAIMDCEGNIYKGSYMESAA-----------Y---------------NPSLGPVQAALVAYLAAGGSGGGGGGYERI 257 (303)
Q Consensus 204 ~vgaal~~~dG~iy~G~nvEnaa-----------~---------------~~slcAEr~Al~~a~~~~~~~~G~~~~~~i 257 (303)
..-.|...-+|++|+|+|--.-. - -...|||-.||-+|+-. |....+++
T Consensus 28 ~~tvA~~~I~G~~f~gvN~~~rp~ad~n~p~~~~dri~~~~~~~~~pn~~~~~~HAE~~aiqqA~d~-----G~~~g~~~ 102 (146)
T PF14437_consen 28 PGTVAEGEINGQKFFGVNSTARPIADPNLPTLIRDRIAAKIPGKPGPNNNMAKAHAEAGAIQQAYDA-----GKTVGRSM 102 (146)
T ss_pred cceEEEEEECCeEEEeeCCCCcccCCCCCcceeccccccccccccCccchhHHHHHHHHHHHHHHHh-----cCccCCeE
Confidence 34455666699999999976421 0 12579999999999999 42100121
Q ss_pred eEEEEEeCCCCCcCCcHHHHHHHHHHC--CCC-eEEEEeC-CCc
Q 022046 258 VAAALVEKEDAVVRQEHAARLLLQVIS--PKC-EFNVFHC-GCK 297 (303)
Q Consensus 258 ~~i~~v~~~~~~~~PCG~CRq~L~e~~--~~~-~v~v~~~-~~~ 297 (303)
. +.|+ . ..|+.|++-|..++ -++ +++|... .|+
T Consensus 103 -t-m~Vd-r----~vC~~C~~~i~~~a~~lGl~~L~I~~~~sG~ 139 (146)
T PF14437_consen 103 -T-MYVD-R----DVCGYCGGDIPSMAEKLGLKSLTIHEPDSGK 139 (146)
T ss_pred -E-EEEC-c----ccchHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 2 2233 2 68999999998887 333 4556555 453
No 65
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=77.65 E-value=9.5 Score=32.36 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCcccee--eEEEEEeCCCCCcCCcHHHHHHHHHHC---CCCeEEEEeC
Q 022046 228 NPSLGPVQAALVAYLAAGGSGGGGGGYERI--VAAALVEKEDAVVRQEHAARLLLQVIS---PKCEFNVFHC 294 (303)
Q Consensus 228 ~~slcAEr~Al~~a~~~~~~~~G~~~~~~i--~~i~~v~~~~~~~~PCG~CRq~L~e~~---~~~~v~v~~~ 294 (303)
.-..++|.-.|-.....+ +.. ... -.|-++.. ..||..|.-+|.+|. |++.+.|++.
T Consensus 71 ~R~~DsE~KiL~~ia~~l----~~~--~~~~~G~i~l~te----~~pC~SC~~vi~qF~~~~pni~~~v~~~ 132 (133)
T PF14424_consen 71 PRNNDSEYKILEDIAKKL----GDN--PDPSGGTIDLFTE----LPPCESCSNVIEQFKKDFPNIKVNVVYN 132 (133)
T ss_pred cccccHHHHHHHHHHHHh----ccc--cccCCceEEEEec----CCcChhHHHHHHHHHHHCCCcEEEEecC
Confidence 567899999988877775 221 222 25666654 389999999999997 8888888754
No 66
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=72.91 E-value=10 Score=32.23 Aligned_cols=53 Identities=9% Similarity=0.379 Sum_probs=36.7
Q ss_pred CccChhHHHHHHHHHc-CCCc-E--EEEEEEe--CCChhhHHHHHHhhCC-CccEEEEec
Q 022046 74 QSIHAEQFLITNLILN-AEPR-L--QHLAVSA--APCGHCRQFLQELRNT-SDINICITS 126 (303)
Q Consensus 74 ~~vCAEr~Ai~~Av~~-G~~~-i--~aiav~~--~PCG~CRQ~L~E~~~~-~~~~V~~~~ 126 (303)
-...+|.-.+-+.... +... . -.|-+.+ +||..|+-+|.+|... |++.|.+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred ccccHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHHHHCCCcEEEEec
Confidence 3789999988766543 3222 1 2455555 9999999999999743 677777654
No 67
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=63.96 E-value=12 Score=31.09 Aligned_cols=77 Identities=26% Similarity=0.350 Sum_probs=44.4
Q ss_pred EEeCCCc------EEEeeecCCCC---CCCC-CccChhHHHHHHHHHcCCCcEEEEEEEe--CCChhhHHHHHHhhCCCc
Q 022046 52 GLGSSGR------IFLGGNVEFPG---LPLH-QSIHAEQFLITNLILNAEPRLQHLAVSA--APCGHCRQFLQELRNTSD 119 (303)
Q Consensus 52 vl~~dG~------iy~G~NvE~~s---~~~~-~~vCAEr~Ai~~Av~~G~~~i~aiav~~--~PCG~CRQ~L~E~~~~~~ 119 (303)
|.+.||. +..|.-.++.. ||-. +..|-|.-++...-.+-.. =+.+.|-+ +||-.||--|+.+....+
T Consensus 15 ~~d~~G~~~~~~~~~SG~mt~~e~~LgFP~~slaTHTE~ri~~~l~~~~~~-Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g 93 (118)
T PF14427_consen 15 LYDSSGVLKARSIITSGNMTEAERKLGFPESSLATHTEARITRDLPLNQVP-GDRMLIDGQYPPCNSCKGKMRRASEKSG 93 (118)
T ss_pred EEcCCCCEeeccceecCCccCCccccCCchhhhhhhhHhHHHhhcCccccC-CceEEEeeecCCCchhHHHHHHhhhccC
Confidence 3455654 44566555521 2211 3567777766554322100 12344555 999999999999976566
Q ss_pred cEEEEecCCC
Q 022046 120 INICITSINS 129 (303)
Q Consensus 120 ~~V~~~~~~~ 129 (303)
..|.....++
T Consensus 94 ~~I~Y~w~~~ 103 (118)
T PF14427_consen 94 ATIQYTWPNG 103 (118)
T ss_pred cEEEEecCCC
Confidence 7777655443
No 68
>PF01614 IclR: Bacterial transcriptional regulator This Pfam family contains some of the members of the iclR family; InterPro: IPR014757 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; PDB: 3MQ0_A 2IA2_D 3OBF_B 2G7U_C 3R4K_A 1TF1_D 1MKM_A 1YSP_A 3BJN_A 1TD5_A ....
Probab=62.35 E-value=28 Score=28.00 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHHcC--------CChhhhHHHHHHHHHhhcCCC----CC-C-CceEEEEEeCCCcEEEeeecCCC
Q 022046 7 VIEAAEAESMAQKSG--------LTVLQLLPTLVKSAQTLARPP----IS-K-FHVGAVGLGSSGRIFLGGNVEFP 68 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~L~~~A~~a~~~ay~P----yS-~-f~VgAavl~~dG~iy~G~NvE~~ 68 (303)
.++.++.+++..+.. ++..++|.+...+++++.|+= +. + ..|++-|.+.+|++..++++--+
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ir~~Gya~~~~~~~~gv~~iA~Pi~~~~g~~~~alsv~~~ 102 (129)
T PF01614_consen 27 FLPEEEREALLARLPLEPYTERTITDPEELRQELAEIRERGYAVSDGEYEPGVAAIAVPIFDPNGQVVAALSVSGP 102 (129)
T ss_dssp TSGHHHHHHHHHHHTSSBSSTTSCCSHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEEETTSCEEEEEEEEEE
T ss_pred hCCHHHHHHHHhccccccccCCCCCCHHHHHHHHHHHHHhcccccchhcccccceEEEEEECCCCCEEEEEEEeeE
Confidence 467889999999822 234567888898999998872 11 1 14777788889999999998654
No 69
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=56.56 E-value=7.1 Score=32.67 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHH---HHHHHHHHCCCCeEEEE
Q 022046 227 YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHA---ARLLLQVISPKCEFNVF 292 (303)
Q Consensus 227 ~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~---CRq~L~e~~~~~~v~v~ 292 (303)
++.++++|+..|..+... |- ....|+.+.. ...||.. |..+|.+.-|+++|.-.
T Consensus 42 ~~~~~H~E~~il~~l~~~-----~v-~p~~I~elYt------El~PC~~~~~C~~~l~~~~p~a~vt~s 98 (118)
T PF14440_consen 42 SGGKPHSERAILHQLRAH-----GV-PPEQITELYT------ELEPCELGGYCARMLRNSLPGAEVTYS 98 (118)
T ss_pred CCCCCChHHHHHHHHHHc-----CC-cHHHHHHHHH------hcccccccchHHHHHHhhCCCCeEEEe
Confidence 378999999999998877 42 2234555442 2479998 99999998899998654
No 70
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=54.40 E-value=6.3 Score=32.96 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=40.0
Q ss_pred CccChhHHHHHHHHHcCCC--cEEEEEEEeCCChh---hHHHHHHhhCCCccEEEEe
Q 022046 74 QSIHAEQFLITNLILNAEP--RLQHLAVSAAPCGH---CRQFLQELRNTSDINICIT 125 (303)
Q Consensus 74 ~~vCAEr~Ai~~Av~~G~~--~i~aiav~~~PCG~---CRQ~L~E~~~~~~~~V~~~ 125 (303)
.+.|+|+..+..+...|.. .|+.|..=-.||.. |.++|.+.- |+++|.-.
T Consensus 44 ~~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~~~~C~~~l~~~~--p~a~vt~s 98 (118)
T PF14440_consen 44 GKPHSERAILHQLRAHGVPPEQITELYTELEPCELGGYCARMLRNSL--PGAEVTYS 98 (118)
T ss_pred CCCChHHHHHHHHHHcCCcHHHHHHHHHhcccccccchHHHHHHhhC--CCCeEEEe
Confidence 4899999999999888764 66666544489999 999999975 67777754
No 71
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=53.35 E-value=44 Score=30.71 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCC-CC-----CCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPP-IS-----KFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~P-yS-----~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
+.++.++++++.+++.+ +..++|.+...+++++.|+= .. -+.||+-|.+.+|++..+++|-.+.
T Consensus 150 A~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~iR~~Gya~~~~e~~~gv~~vA~Pv~~~~g~~~aalsv~~p~ 227 (257)
T PRK15090 150 AWRDRDEVREILSGVEFKRSTEKTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPT 227 (257)
T ss_pred hCCCHHHHHHHHccCCCCcCCCCCCCCHHHHHHHHHHHHHhCCCccccccccCCEEEEEEEECCCCCEEEEEEEEeeh
Confidence 45678889988876443 34466888888999999882 11 1367778889999999999997654
No 72
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=52.72 E-value=1.2e+02 Score=25.70 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=46.1
Q ss_pred cEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCC-CCC------------ccceee--EEEEEeCCC
Q 022046 204 PSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGG-GGG------------GYERIV--AAALVEKED 267 (303)
Q Consensus 204 ~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~-G~~------------~~~~i~--~i~~v~~~~ 267 (303)
.|.|+|++.+|.++ .++|. | +-|..++||-+-|.-.....-+-+ |+. .-+.|. +.++++
T Consensus 9 ~VvA~lv~~~G~l~daa~Nt-N-a~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vT--- 83 (136)
T PF14439_consen 9 RVVAALVSPDGELVDAAVNT-N-ADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVT--- 83 (136)
T ss_pred ceeEEEECCCCcEEEeeecc-C-CccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEe---
Confidence 68899999999987 44554 2 346779999998887766521000 000 000111 122222
Q ss_pred CCcCCcHHHHHHHHHHC
Q 022046 268 AVVRQEHAARLLLQVIS 284 (303)
Q Consensus 268 ~~~~PCG~CRq~L~e~~ 284 (303)
..||-||-.++.+.+
T Consensus 84 --lqcCkMCAalv~a~~ 98 (136)
T PF14439_consen 84 --LQCCKMCAALVCAAS 98 (136)
T ss_pred --chhHHHHHHHHHHHh
Confidence 369999999999997
No 73
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=52.42 E-value=31 Score=32.75 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=42.2
Q ss_pred CCcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCC-CCCceEEEEEeCCCcEEEeee
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPI-SKFHVGAVGLGSSGRIFLGGN 64 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~Py-S~f~VgAavl~~dG~iy~G~N 64 (303)
+|+-+|.-+.+++|.++.|+.....+-+.+++..++..... ++=.|||+.++..|++-.++.
T Consensus 94 t~h~~LvG~gA~~fA~~~G~~~~~l~t~~~~~~~~~~~~~~~~~dTVGaValD~~G~laaatS 156 (263)
T cd04513 94 TKHTLLVGEGATRFAVSMGFPEENLLTERSRKAWKKWLEENCNHDTIGMIALDANGNIAAGTS 156 (263)
T ss_pred CCCeEEeCHHHHHHHHHcCCCCCcCCCHHHHHHHHHHHhcCCCCCCEEEEEEeCCCCEEEEEC
Confidence 57788889999999999999755444444443332211111 223799999999999877654
No 74
>PRK13663 hypothetical protein; Provisional
Probab=48.71 E-value=82 Score=32.11 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCh-hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHc
Q 022046 12 EAESMAQKSGLTV-LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN 89 (303)
Q Consensus 12 ~~~~~~~~~~~~~-~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~ 89 (303)
.++-++.+.|++. |+..+..|++..+..-.| ++|+...||+|++|-+=+. +.|--.+|.+|+..
T Consensus 326 k~~llM~~~gi~~~dR~vv~~A~~~a~~t~~p------a~AieL~DG~IiTGKtS~L--------lgasaA~lLNAlK~ 390 (493)
T PRK13663 326 KIELLMNDAGITPEDRKVVVAAREKAEETGEP------ALAIELPDGTIVTGKTSEL--------LGATAAVLLNALKH 390 (493)
T ss_pred HHHHHHHHcCCChhhhHHHHHHHHHHHHhCCC------eEEEEeCCCCEEeCCCccc--------cchHHHHHHHHHHH
Confidence 3556788999974 556777777777776665 7899999999999987664 23334667777654
No 75
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=44.65 E-value=72 Score=27.14 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=40.1
Q ss_pred CccChhHHHHHHHHHcCCCcEEEEEEE-eCCChh---hHHHHHHhhC-CCccEEEEecCCC
Q 022046 74 QSIHAEQFLITNLILNAEPRLQHLAVS-AAPCGH---CRQFLQELRN-TSDINICITSINS 129 (303)
Q Consensus 74 ~~vCAEr~Ai~~Av~~G~~~i~aiav~-~~PCG~---CRQ~L~E~~~-~~~~~V~~~~~~~ 129 (303)
.+-|.|..+-..|..+|.+. ..|+|. ..|||. |.|.|.-+-. +..+.|+..+..+
T Consensus 67 ~~~HVE~k~Aa~Mr~~g~~~-a~vvIN~n~pC~~~~gC~~~l~~iLP~GstLtV~~~~~~~ 126 (135)
T PF14428_consen 67 AASHVEGKAAAWMRRNGIKH-ATVVINPNGPCGGRDGCDQLLPAILPEGSTLTVHWPGGRG 126 (135)
T ss_pred chhhhhHHHHHHHHHcCCeE-EEEEEeCCCCCCCccCHHHHHHHhCCCCCEEEEEeeCCCc
Confidence 47799999888998877664 344555 589999 9999998753 3456666665544
No 76
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=42.30 E-value=66 Score=27.20 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=44.8
Q ss_pred CceEEEEEeCCCcEEE-eeecCCCCCCCCCccChhHHHHHHHHHc--C-------------------CCcE--EEEEEEe
Q 022046 46 FHVGAVGLGSSGRIFL-GGNVEFPGLPLHQSIHAEQFLITNLILN--A-------------------EPRL--QHLAVSA 101 (303)
Q Consensus 46 f~VgAavl~~dG~iy~-G~NvE~~s~~~~~~vCAEr~Ai~~Av~~--G-------------------~~~i--~aiav~~ 101 (303)
-.|.|+++..+|.++. ++|...-+ ..+|||-+-+.-.... | .+.| -+...++
T Consensus 8 R~VvA~lv~~~G~l~daa~NtNa~N----~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vT 83 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNTNADN----KMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVT 83 (136)
T ss_pred cceeEEEECCCCcEEEeeeccCCcc----ceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEe
Confidence 3699999999999774 55554322 3799999988755321 0 0111 1223333
Q ss_pred -CCChhhHHHHHHhhC
Q 022046 102 -APCGHCRQFLQELRN 116 (303)
Q Consensus 102 -~PCG~CRQ~L~E~~~ 116 (303)
-||-+|--++.+++.
T Consensus 84 lqcCkMCAalv~a~~d 99 (136)
T PF14439_consen 84 LQCCKMCAALVCAASD 99 (136)
T ss_pred chhHHHHHHHHHHHhh
Confidence 899999999999975
No 77
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=41.67 E-value=98 Score=31.63 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCh-hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHc
Q 022046 11 AEAESMAQKSGLTV-LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN 89 (303)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~ 89 (303)
+.++-++++.|++. |+..+..|++..+..-.| ++|+...||+|++|-+=+. +.|--.+|.+|+..
T Consensus 324 ~k~~llM~~~~i~~~dR~vv~~A~~~ae~t~~p------a~AieL~DG~IvTGktS~L--------lgasaA~lLNAlK~ 389 (491)
T PF08903_consen 324 QKIELLMNQAGITPEDRPVVAAAREKAEETGAP------AAAIELPDGTIVTGKTSDL--------LGASAAALLNALKY 389 (491)
T ss_dssp HHHHHHHHHHT--GGGSTTHHHHHHHHHHHSS-------EEEEE-TTS-EEEEE--SS--------B-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHhhHHHHHHHHHHHHhCCC------eEEEEeCCCCEEeCCCccc--------cchHHHHHHHHHHH
Confidence 34567889999974 556777888888777665 6888999999999998764 23334677787653
No 78
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=39.27 E-value=41 Score=28.31 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=34.5
Q ss_pred CccChhHHHHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhh
Q 022046 74 QSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 74 ~~vCAEr~Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
..+|||..-+.....+.....+-|.++-.||..|..+|..+.
T Consensus 66 ~~vHaE~~ll~~~~~~~~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 66 PSVHAEMQLLDHLERHFDPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCeehHHHHHHHHHHhcCCCCCEEEEeCchHHhHHHHHHHhC
Confidence 489999998888777744566777766699999999999985
No 79
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=38.64 E-value=1e+02 Score=27.97 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=47.2
Q ss_pred ccccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCC------CCCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPP------ISKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~P------yS~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
+.++.++++++..+... ++.++|.+...+++++.|+= ..-..||+-|.+.+|++..+++|-.+.
T Consensus 144 A~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~ir~~Gya~~~~e~~~g~~~vA~Pv~~~~g~~~aalsv~~p~ 221 (248)
T TIGR02431 144 AGLDDEELDEYLARSTLQALTPRTITDRDALLAELLAVRAQGYALVDQELELGLRSIAVPIRNARGQVVAALNVSTHA 221 (248)
T ss_pred cCCCHHHHHHHHhCCCCccCCCCCCCCHHHHHHHHHHHHHcCcEeehhhcccCCeEEEEEEECCCCCEEEEEEEeeec
Confidence 45678889999876533 34467888888999999882 122367777888999999999987554
No 80
>PRK11569 transcriptional repressor IclR; Provisional
Probab=37.87 E-value=1.1e+02 Score=28.34 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=46.4
Q ss_pred ccccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCCC------CCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPPI------SKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~Py------S~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
+.++.++.+.+..+..+ +..+.|.+...+++++.|+=- .-+.||+.|.+.+|++..+++|-.+.
T Consensus 167 A~l~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~ir~~Gya~~~~e~~~gv~~iA~Pi~~~~g~~~aalsvs~p~ 244 (274)
T PRK11569 167 AQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCVAACIFDEHREPFAAISISGPI 244 (274)
T ss_pred cCCCHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCccccccCCcCcEEEEEEEECCCCCEEEEEEEEeeh
Confidence 35677888888876543 234568888889999998831 11367777888999999999996543
No 81
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=34.65 E-value=1.2e+02 Score=27.85 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=49.7
Q ss_pred ccccHHHHHHHHHHc--------CCChhhhHHHHHHHHHhhcCCCCC------CCceEEEEEeCCCcEEEeeecCCCCC
Q 022046 6 FVIEAAEAESMAQKS--------GLTVLQLLPTLVKSAQTLARPPIS------KFHVGAVGLGSSGRIFLGGNVEFPGL 70 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~--------~~~~~~~L~~~A~~a~~~ay~PyS------~f~VgAavl~~dG~iy~G~NvE~~s~ 70 (303)
..++.++.+.+..+. .+++.+.|.+...+++++.|+=.. -.-|++.+.+.+|++..+++|-.+.+
T Consensus 141 A~l~~~e~~~~~~~~~~~~~t~~t~~~~~~l~~el~~iR~~Gya~~~~e~~~gv~~iAaPi~~~~g~v~aaisv~~p~~ 219 (246)
T COG1414 141 AFLPEEEREALLEEEELRPFTPRTITDPEALLEELAEIRARGYAVDDEELEPGVRCIAAPIFDAGGEVVAAISVSGPAS 219 (246)
T ss_pred hcCCHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHHHhcCeeeeccccccCcEEEEEEEECCCCCEEEEEEEeechh
Confidence 345677888877766 234557788889999999998322 23788999999999999999987764
No 82
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=33.65 E-value=84 Score=29.54 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=33.8
Q ss_pred CCcccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCC-CceEEEEEeCCCcEEEeeec
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISK-FHVGAVGLGSSGRIFLGGNV 65 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~-f~VgAavl~~dG~iy~G~Nv 65 (303)
+|+-+|.-+.+++|.+++|+. +..+ =.||++.++. |++-.++.-
T Consensus 102 t~h~lLvG~gA~~fA~~~G~~------------------~~~~~dTVG~valD~-G~laaatST 146 (246)
T cd04703 102 TPHVLLAGDGAVKFAALTGVE------------------DPGGHDTVGAVARDG-GRLAAATST 146 (246)
T ss_pred CCCeEEECHHHHHHHHHhCCC------------------CCCCCCCEEEEEEEC-CCEEEEECC
Confidence 467777888888888888887 2233 3799999999 998877653
No 83
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=31.91 E-value=68 Score=23.14 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHcCCChhhhHHHHHH
Q 022046 9 EAAEAESMAQKSGLTVLQLLPTLVK 33 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~L~~~A~ 33 (303)
.+.|+.-|+++||++.++ |.++.+
T Consensus 19 e~~ev~ywa~~~gvt~~~-L~~AV~ 42 (57)
T PF12244_consen 19 EPYEVRYWAKRFGVTEEQ-LREAVR 42 (57)
T ss_pred CHHHHHHHHHHHCcCHHH-HHHHHH
Confidence 467899999999999887 555443
No 84
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=31.64 E-value=1.6e+02 Score=27.37 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCCCC--C-----CceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPPIS--K-----FHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~PyS--~-----f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++.++++++..+.++ ++.++|.+...+++++.|+ ++ . ..||+-|++.+|++..+++|-.+.
T Consensus 163 ~l~~~~~~~~l~~~~l~~~t~~t~~~~~~l~~eL~~ir~~Gya-~~~~E~~~gv~~vAvPI~~~~g~~~aalsvs~p~ 239 (271)
T PRK10163 163 PLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYT-VDKEEHVVGLNCIASAIYDDVGSVVAAISISGPS 239 (271)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhCCe-ecccccCcCCeEEEEEEECCCCCEEEEEEEEEec
Confidence 4567788888765432 3446688888889999998 22 1 367777888999999999997654
No 85
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=30.64 E-value=58 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=23.7
Q ss_pred cCCCh--hhhHHHHHHHHH-hhcCCCCCCCceEEE
Q 022046 20 SGLTV--LQLLPTLVKSAQ-TLARPPISKFHVGAV 51 (303)
Q Consensus 20 ~~~~~--~~~L~~~A~~a~-~~ay~PyS~f~VgAa 51 (303)
+|..+ .+.++..|++.+ ++.|++|.+-++|-+
T Consensus 12 lGf~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~V 46 (59)
T PF11372_consen 12 LGFSESTARDIIRQAKALLVQKGFSFYNNKRLGRV 46 (59)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCcccCCccCcc
Confidence 35543 456888888865 899999999887643
No 86
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=29.92 E-value=1.2e+02 Score=29.60 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=39.7
Q ss_pred CCcccccHHHHHHHHHHcCCChh--hhHH-HHH----HHHHh------hcCCCCC--------------CC-ceEEEEEe
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVL--QLLP-TLV----KSAQT------LARPPIS--------------KF-HVGAVGLG 54 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~L~-~~A----~~a~~------~ay~PyS--------------~f-~VgAavl~ 54 (303)
+|+-+|.-+.+++|.++.|+... +.|+ +.. ++..+ +-..|+. ++ .|||++++
T Consensus 116 t~H~lLvG~GA~~fA~~~G~~~~~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD 195 (318)
T PLN02689 116 TPHIYLAFDGAEAFARQQGVETVDNSYFITEENVERLKQAKEANSVQFDYRIPLDKPAKAAALAADGDAQPETVGCVAVD 195 (318)
T ss_pred CCCEEEEChHHHHHHHHcCCCcCCcccccCHHHHHHHHHHHHhcccccccccCCCcccccccccccCCCCCCcEEEEEEe
Confidence 57789999999999999999531 1111 111 11111 1112321 22 79999999
Q ss_pred CCCcEEEeeec
Q 022046 55 SSGRIFLGGNV 65 (303)
Q Consensus 55 ~dG~iy~G~Nv 65 (303)
.+|++-.+++-
T Consensus 196 ~~G~lAaaTST 206 (318)
T PLN02689 196 SDGNCAAATST 206 (318)
T ss_pred CCCCEEEEECC
Confidence 99999887754
No 87
>PRK09732 hypothetical protein; Provisional
Probab=28.30 E-value=3.4e+02 Score=22.97 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHh
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~ 244 (303)
++++++|++.+++- +.+|..+|++..|+...=.-.+++.+ .+.| .|..+|++.
T Consensus 13 ~~~~~aA~~~A~~~-----g~~v~iaVvD~~G~l~a~~RmDgA~~---~s~~-iA~~KA~TA 65 (134)
T PRK09732 13 SAIIAAGQEEAQKN-----NWSVSIAVADDGGHLLALSRMDDCAP---IAAY-ISQEKARTA 65 (134)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEEcCCCCEEEEEEcCCCcc---ccHH-HHHHHHHHH
No 88
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.59 E-value=2.1e+02 Score=28.50 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCh-hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCC
Q 022046 13 AESMAQKSGLTV-LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFP 68 (303)
Q Consensus 13 ~~~~~~~~~~~~-~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~ 68 (303)
.+-++..+|++. |+.....|++..+..-.| |.|+-..||++++|-+-|--
T Consensus 327 ie~~M~~~G~t~eDRkVv~~A~~k~E~tg~p------a~A~elpdG~iiTGK~SeL~ 377 (493)
T COG4868 327 IELLMNDLGLTPEDRKVVVFARQKAELTGQP------ALAFELPDGKIITGKTSELF 377 (493)
T ss_pred HHHHHhhcCCChhcchhhhHhHHHHHhcCCC------ceEEEcCCCceeeccchhhc
Confidence 455677888864 566778888888777776 78889999999999998863
No 89
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=24.23 E-value=99 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhhC-----CCccEEEEecC
Q 022046 83 ITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRN-----TSDINICITSI 127 (303)
Q Consensus 83 i~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~-----~~~~~V~~~~~ 127 (303)
+.+.+.. ..+...|.+.++-|+.||+++..|.. +.++.++..+.
T Consensus 6 ~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~ 54 (101)
T TIGR01068 6 FDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNV 54 (101)
T ss_pred HHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEEC
Confidence 3344443 34455666666779999998766632 23466665543
No 90
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.71 E-value=1.4e+02 Score=17.43 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=15.6
Q ss_pred CCcEEEEEEeCCCCEEEeEe
Q 022046 202 KCPSGVAIMDCEGNIYKGSY 221 (303)
Q Consensus 202 ~~~vgaal~~~dG~iy~G~n 221 (303)
...|-+...+++|+++.|.+
T Consensus 4 ~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEET
T ss_pred CCeEEEEEEcCCcCEEEEeC
Confidence 44688999999999999863
No 91
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=23.38 E-value=1.4e+02 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.612 Sum_probs=19.0
Q ss_pred eCCChhhHHHHHHhhCCCccEEEEecC
Q 022046 101 AAPCGHCRQFLQELRNTSDINICITSI 127 (303)
Q Consensus 101 ~~PCG~CRQ~L~E~~~~~~~~V~~~~~ 127 (303)
+++||-|+.++.-+. ..+++|-....
T Consensus 33 sPnCGCC~~w~~~mk-~~Gf~Vk~~~~ 58 (149)
T COG3019 33 SPNCGCCDEWAQHMK-ANGFEVKVVET 58 (149)
T ss_pred CCCCccHHHHHHHHH-hCCcEEEEeec
Confidence 499999999988774 45676665433
No 92
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=22.90 E-value=2.9e+02 Score=23.48 Aligned_cols=54 Identities=20% Similarity=0.088 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHH---HHHHHHHHCC-CCeEEEEeCCC
Q 022046 229 PSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHA---ARLLLQVISP-KCEFNVFHCGC 296 (303)
Q Consensus 229 ~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~---CRq~L~e~~~-~~~v~v~~~~~ 296 (303)
.+-+.|..+-+.|..+ | |+...++-. +-.||+- |.+.|.-+-| +-.+.|...++
T Consensus 67 ~~~HVE~k~Aa~Mr~~-----g------~~~a~vvIN---~n~pC~~~~gC~~~l~~iLP~GstLtV~~~~~ 124 (135)
T PF14428_consen 67 AASHVEGKAAAWMRRN-----G------IKHATVVIN---PNGPCGGRDGCDQLLPAILPEGSTLTVHWPGG 124 (135)
T ss_pred chhhhhHHHHHHHHHc-----C------CeEEEEEEe---CCCCCCCccCHHHHHHHhCCCCCEEEEEeeCC
Confidence 3345566666677777 4 334333322 2389999 9999999984 46777776655
No 93
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=22.72 E-value=1.1e+02 Score=25.14 Aligned_cols=50 Identities=20% Similarity=0.437 Sum_probs=35.7
Q ss_pred CccChhHHHHHHHHHcCCCcEEEEEEEe-CCChhhHHHHHHhhCCCccEEEEecCC
Q 022046 74 QSIHAEQFLITNLILNAEPRLQHLAVSA-APCGHCRQFLQELRNTSDINICITSIN 128 (303)
Q Consensus 74 ~~vCAEr~Ai~~Av~~G~~~i~aiav~~-~PCG~CRQ~L~E~~~~~~~~V~~~~~~ 128 (303)
+..|+|+-||+-.+.+- .|+... -=|+-|-+++.-+..-.+-+|+|.+.+
T Consensus 60 ~~~HSEKlAiafgli~~-----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~ 110 (116)
T PF14432_consen 60 LCYHSEKLAIAFGLINT-----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSN 110 (116)
T ss_pred hhccHHHHHHHhcccce-----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCC
Confidence 36799999998765443 222223 689999999998764456678887764
No 94
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=21.44 E-value=2.2e+02 Score=22.18 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=35.0
Q ss_pred CCCCcccccH---HHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCC
Q 022046 1 MERPRFVIEA---AEAESMAQKSGLTVLQLLPTLVKSAQTLARPPIS 44 (303)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS 44 (303)
|++-+++|+. .+++++++++|++..+.+--..++.....--|++
T Consensus 1 m~~i~vRiD~~lK~~A~~vl~~lGls~S~Ai~~fl~qi~~~~~iPF~ 47 (80)
T PRK11235 1 MATINVRVDDELKARAYAVLEKLGVTPSEALRLLLQYVAENGRLPFK 47 (80)
T ss_pred CceEEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 5666677765 5788999999999999888888888877777765
No 95
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=20.56 E-value=1.6e+02 Score=21.30 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhh
Q 022046 82 LITNLILNAEPRLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 82 Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
.+.+++..+. ..-|.+.++=|+.|+++...|.
T Consensus 7 ~~~~~i~~~~--~~~v~f~~~~C~~C~~~~~~~~ 38 (101)
T cd02961 7 NFDELVKDSK--DVLVEFYAPWCGHCKALAPEYE 38 (101)
T ss_pred HHHHHHhCCC--cEEEEEECCCCHHHHhhhHHHH
Confidence 4555666655 2233333355999999988774
No 96
>PRK10424 ilvG operon leader peptide; Provisional
Probab=20.54 E-value=95 Score=19.86 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=6.1
Q ss_pred EEeCCChhh
Q 022046 99 VSAAPCGHC 107 (303)
Q Consensus 99 v~~~PCG~C 107 (303)
++-+|||.-
T Consensus 18 iiippcgaa 26 (32)
T PRK10424 18 IIIPPCGAA 26 (32)
T ss_pred EEecCchhh
Confidence 334999963
No 97
>PRK10226 isoaspartyl peptidase; Provisional
Probab=20.08 E-value=4.1e+02 Score=25.86 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=39.8
Q ss_pred CCcccccHHHHHHHHHHcCCChhh--hHHH-----HHHHHHhhc-------CCCCC---C-CceEEEEEeCCCcEEEeee
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVLQ--LLPT-----LVKSAQTLA-------RPPIS---K-FHVGAVGLGSSGRIFLGGN 64 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~L~~-----~A~~a~~~a-------y~PyS---~-f~VgAavl~~dG~iy~G~N 64 (303)
+|+-+|.-+.+++|.+++|+...+ .|+. .-.+..+.. -.|+. + =.|||+.++.+|++-.|+.
T Consensus 117 t~hv~LvG~gA~~fA~~~G~~~~~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~lAaaTS 196 (313)
T PRK10226 117 SPHVMMIGEGAENFAFAHGMERVSPEIFSTPLRYEQLLAARAEGATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATS 196 (313)
T ss_pred CCCeEEEcHHHHHHHHHcCCCcCCcccccCHHHHHHHHHHHhhcccccccccCccccCCCCCCEEEEEEeCCCCEEEEEC
Confidence 577889999999999999996321 1211 111111110 02332 1 2799999999999887765
Q ss_pred c
Q 022046 65 V 65 (303)
Q Consensus 65 v 65 (303)
-
T Consensus 197 T 197 (313)
T PRK10226 197 T 197 (313)
T ss_pred C
Confidence 3
Done!