Query 022046
Match_columns 303
No_of_seqs 218 out of 2117
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eg2_A Cytidine deaminase; UMP 100.0 1.1E-78 3.8E-83 570.2 28.8 265 5-293 33-297 (298)
2 1ctt_A Cytidine deaminase; hyd 100.0 1.6E-76 5.5E-81 556.4 29.9 267 1-292 24-293 (294)
3 3dmo_A Cytidine deaminase; str 100.0 1.8E-42 6.2E-47 292.6 15.6 123 20-147 7-137 (138)
4 2d30_A Cytidine deaminase; pur 100.0 7.4E-42 2.5E-46 290.3 14.5 127 20-151 8-140 (141)
5 3mpz_A Cytidine deaminase; ssg 100.0 8.4E-41 2.9E-45 285.8 11.9 118 25-151 25-148 (150)
6 3r2n_A Cytidine deaminase; str 100.0 2.3E-40 7.7E-45 280.1 12.0 120 24-152 9-134 (138)
7 1r5t_A Cytidine deaminase; zin 100.0 1.2E-39 4.2E-44 276.9 12.7 123 25-151 11-142 (142)
8 2fr5_A Cytidine deaminase; tet 100.0 1.4E-38 4.8E-43 271.6 13.8 122 25-151 15-143 (146)
9 1uwz_A Cytidine deaminase; CDD 100.0 2.5E-37 8.7E-42 260.9 13.9 124 25-152 3-132 (136)
10 3oj6_A Blasticidin-S deaminase 100.0 8.3E-37 2.8E-41 263.3 16.1 116 24-149 30-153 (158)
11 3dmo_A Cytidine deaminase; str 100.0 1.5E-36 5.1E-41 256.5 14.6 111 183-299 12-123 (138)
12 3b8f_A Putative blasticidin S 100.0 8.1E-37 2.8E-41 259.6 10.3 122 23-151 2-133 (142)
13 2d30_A Cytidine deaminase; pur 100.0 1.6E-35 5.6E-40 251.3 15.4 110 182-299 12-122 (141)
14 2z3g_A Blasticidin-S deaminase 100.0 3.3E-35 1.1E-39 246.2 15.9 117 24-148 6-129 (130)
15 3mpz_A Cytidine deaminase; ssg 100.0 6.4E-35 2.2E-39 249.4 13.0 112 175-296 18-130 (150)
16 3r2n_A Cytidine deaminase; str 100.0 3.3E-34 1.1E-38 242.4 13.2 106 181-296 9-115 (138)
17 1r5t_A Cytidine deaminase; zin 100.0 5.4E-34 1.8E-38 242.2 13.8 111 181-299 10-123 (142)
18 2fr5_A Cytidine deaminase; tet 100.0 2.9E-32 1E-36 232.5 14.8 111 181-299 14-125 (146)
19 1uwz_A Cytidine deaminase; CDD 100.0 2.2E-31 7.6E-36 224.6 15.3 110 182-299 3-113 (136)
20 3b8f_A Putative blasticidin S 100.0 4.2E-31 1.4E-35 224.3 11.0 108 182-299 4-115 (142)
21 3oj6_A Blasticidin-S deaminase 100.0 3.3E-30 1.1E-34 222.1 14.7 104 181-296 30-135 (158)
22 2z3g_A Blasticidin-S deaminase 100.0 1E-29 3.6E-34 212.8 15.2 108 181-299 6-114 (130)
23 4eg2_A Cytidine deaminase; UMP 99.9 1.2E-27 3.9E-32 224.5 12.3 97 24-124 191-295 (298)
24 1ctt_A Cytidine deaminase; hyd 99.9 1.6E-27 5.3E-32 223.9 13.0 97 25-124 188-292 (294)
25 2b3j_A TRNA adenosine deaminas 99.4 2.5E-13 8.5E-18 116.7 6.6 91 21-115 3-97 (159)
26 2a8n_A Cytidine and deoxycytid 99.4 2.3E-13 7.8E-18 115.0 6.2 89 23-115 2-94 (144)
27 1wwr_A TRNA adenosine deaminas 99.3 1.2E-12 3.9E-17 114.1 7.4 88 24-115 22-113 (171)
28 2a8n_A Cytidine and deoxycytid 99.3 7.1E-12 2.4E-16 105.8 9.8 95 183-290 5-100 (144)
29 1p6o_A Cytosine deaminase; hyd 99.3 1.9E-12 6.6E-17 111.5 4.7 90 23-115 12-105 (161)
30 1wwr_A TRNA adenosine deaminas 99.3 5.5E-12 1.9E-16 109.8 7.2 91 183-286 24-115 (171)
31 2b3j_A TRNA adenosine deaminas 99.3 6.9E-12 2.4E-16 107.7 7.6 92 183-287 8-100 (159)
32 2w4l_A DCMP deaminse, deoxycyt 99.2 4.4E-11 1.5E-15 104.7 11.0 89 22-115 10-118 (178)
33 2hvw_A Deoxycytidylate deamina 99.2 5.4E-11 1.8E-15 104.7 10.1 89 22-115 39-144 (184)
34 1p6o_A Cytosine deaminase; hyd 99.2 1.3E-11 4.5E-16 106.3 5.4 92 183-287 15-108 (161)
35 1z3a_A TRNA-specific adenosine 99.2 1.8E-11 6.2E-16 106.1 6.1 87 25-115 9-99 (168)
36 1z3a_A TRNA-specific adenosine 99.1 1.4E-10 4.8E-15 100.5 9.5 91 183-286 10-101 (168)
37 2hvw_A Deoxycytidylate deamina 99.1 2.3E-10 7.9E-15 100.6 9.5 86 183-284 43-144 (184)
38 2w4l_A DCMP deaminse, deoxycyt 99.1 4.7E-10 1.6E-14 98.1 9.9 87 183-286 14-120 (178)
39 2nx8_A TRNA-specific adenosine 98.9 3.2E-10 1.1E-14 99.3 3.2 88 24-115 15-106 (179)
40 1vq2_A DCMP deaminase, deoxycy 98.9 2.8E-09 9.6E-14 93.9 9.2 88 25-115 3-143 (193)
41 1wkq_A Guanine deaminase; doma 98.9 1.6E-09 5.5E-14 93.6 5.2 88 25-115 11-102 (164)
42 2nx8_A TRNA-specific adenosine 98.8 1.2E-08 4.1E-13 89.2 9.4 89 183-284 17-106 (179)
43 1wkq_A Guanine deaminase; doma 98.8 6.2E-09 2.1E-13 89.9 7.0 90 183-284 12-102 (164)
44 1vq2_A DCMP deaminase, deoxycy 98.7 4.8E-08 1.6E-12 86.0 8.4 87 183-285 4-144 (193)
45 2g84_A Cytidine and deoxycytid 98.1 1.2E-05 4.1E-10 71.1 10.2 91 22-115 25-125 (197)
46 2g84_A Cytidine and deoxycytid 97.8 0.00013 4.4E-09 64.4 10.6 93 183-284 29-125 (197)
47 3dh1_A TRNA-specific adenosine 97.5 0.00015 5.1E-09 63.7 6.7 87 25-115 26-122 (189)
48 3dh1_A TRNA-specific adenosine 97.2 0.002 6.7E-08 56.5 10.3 95 183-285 27-123 (189)
49 2hxv_A Diaminohydroxyphosphori 96.6 0.013 4.3E-07 55.9 11.0 82 27-115 16-106 (360)
50 2g6v_A Riboflavin biosynthesis 96.5 0.0068 2.3E-07 58.7 8.8 94 13-115 12-119 (402)
51 2b3z_A Riboflavin biosynthesis 96.4 0.023 8E-07 54.3 11.3 84 23-115 12-103 (373)
52 2hxv_A Diaminohydroxyphosphori 95.1 0.068 2.3E-06 50.8 8.9 83 184-284 16-106 (360)
53 2b3z_A Riboflavin biosynthesis 93.8 0.15 5E-06 48.7 7.9 81 183-284 15-103 (373)
54 2g6v_A Riboflavin biosynthesis 92.8 0.24 8.1E-06 47.8 7.6 81 183-284 31-119 (402)
55 3g8q_A Predicted RNA-binding p 92.0 0.77 2.6E-05 41.8 9.3 58 45-115 21-78 (278)
56 2nyt_A Probable C->U-editing e 88.0 0.74 2.5E-05 40.1 5.6 51 59-114 51-104 (190)
57 3g8q_A Predicted RNA-binding p 80.8 4.4 0.00015 36.9 7.4 59 201-284 20-78 (278)
58 2nyt_A Probable C->U-editing e 73.5 22 0.00075 30.7 9.7 53 216-283 51-104 (190)
59 1ysp_A Transcriptional regulat 63.4 14 0.00047 30.5 6.1 63 7-69 70-146 (181)
60 1tf1_A Negative regulator of a 54.0 29 0.001 29.1 6.7 62 7-69 90-166 (198)
61 1mkm_A ICLR transcriptional re 51.8 28 0.00095 30.4 6.3 63 7-69 145-221 (249)
62 2g7u_A Transcriptional regulat 48.5 34 0.0012 30.0 6.4 64 6-69 149-226 (257)
63 3bh1_A UPF0371 protein DIP2346 48.0 60 0.0021 31.8 8.3 65 11-89 330-395 (507)
64 3bjn_A Transcriptional regulat 48.0 22 0.00076 28.8 4.8 59 7-67 76-142 (165)
65 3obf_A Putative transcriptiona 46.8 14 0.00047 30.4 3.3 62 6-69 69-145 (176)
66 1p4k_A N(4)-(beta-N-acetylgluc 45.4 37 0.0013 31.4 6.2 64 3-66 99-171 (295)
67 2ia2_A Putative transcriptiona 41.6 52 0.0018 29.0 6.5 63 7-69 157-233 (265)
68 2o99_A Acetate operon represso 39.5 41 0.0014 27.6 5.2 62 7-69 74-150 (182)
69 3r4k_A Transcriptional regulat 38.8 55 0.0019 28.8 6.2 62 6-69 144-220 (260)
70 3c17_A L-asparaginase precurso 38.3 67 0.0023 29.9 6.9 63 3-65 116-196 (320)
71 1ysq_A HTH-type transcriptiona 36.8 29 0.00099 28.9 3.8 60 7-67 76-152 (193)
72 3mq0_A Transcriptional repress 35.7 27 0.00092 31.2 3.6 63 6-69 166-242 (275)
73 3d3o_A Putative transcriptiona 35.1 57 0.0019 26.7 5.4 62 7-68 71-146 (178)
74 4gdv_A L-asparaginase; NTN enz 34.0 61 0.0021 30.1 5.8 64 3-66 114-189 (310)
75 3gv1_A Disulfide interchange p 30.9 94 0.0032 24.9 5.9 26 90-115 12-37 (147)
76 2o0y_A Transcriptional regulat 27.3 84 0.0029 27.5 5.4 62 7-69 160-229 (260)
77 3v4k_A DNA DC->DU-editing enzy 26.6 1.1E+02 0.0036 26.8 5.7 51 75-125 78-133 (203)
78 2a8j_A Taspase 1, threonine as 22.6 1.3E+02 0.0044 29.1 6.0 64 3-66 160-253 (420)
79 2e7p_A Glutaredoxin; thioredox 20.7 61 0.0021 23.7 2.7 17 99-115 25-41 (116)
No 1
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-78 Score=570.17 Aligned_cols=265 Identities=37% Similarity=0.576 Sum_probs=244.7
Q ss_pred cccccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHH
Q 022046 5 RFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLIT 84 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~ 84 (303)
+++|+++|+++|++++|+++++.|..+++.++++||+|||+|+||||++++||+||+||||||+++++++++||||+||+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~~G~NvEna~as~~~t~CAEr~Ai~ 112 (298)
T 4eg2_A 33 DATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAIS 112 (298)
T ss_dssp CSEECHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHH
T ss_pred CcccCHHHHHHHHHHhCCCHHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEEEEEcccccccccCccccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999987788889999999999
Q ss_pred HHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCCCccccccCC
Q 022046 85 NLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLLLETHQN 164 (303)
Q Consensus 85 ~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~p~l~~~~~~ 164 (303)
+|+++|+++|++|+|+.+|||+|||+|+||++.++++|++.+. +.++|+||||++|+|+||..+. .||++++|
T Consensus 113 ~Av~~G~~~i~~iav~~~PCG~CRQ~l~Ef~~~~~~~v~~~~~-----~~~~l~eLLP~~F~~~~L~~~~--~ll~~~~~ 185 (298)
T 4eg2_A 113 HAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLPKR-----AAKTLQEYLPESFGPADLGIDS--GLMSPVNH 185 (298)
T ss_dssp HHHHTTCSCEEEEEESSCCCHHHHHHHTTBTTTTTCEEECSSS-----CCEEHHHHSTTCCCGGGGTCCC--CBTSCCCC
T ss_pred HHHhCCCCceEEEEeecCCCHHHHHHHHHhcCCCceEEEeCCC-----ceeEHHHhCCCCCChhhcCCch--hhccccCC
Confidence 9999999999999999999999999999997545788888643 2589999999999999998765 78888999
Q ss_pred CceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHh
Q 022046 165 GMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAA 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~ 244 (303)
++.+. + |++|+++|+++++++|+|||+|+|||||+++||+||+|+||||++|++++||||+||++|+++
T Consensus 186 ~~~~~---~--------~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~ 254 (298)
T 4eg2_A 186 GKTSD---D--------DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMM 254 (298)
T ss_dssp CCCCC---C--------CCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHT
T ss_pred CCccC---C--------HHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHC
Confidence 98751 1 258999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCCCeEEEEe
Q 022046 245 GGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPKCEFNVFH 293 (303)
Q Consensus 245 ~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~~~v~v~~ 293 (303)
|. +..+|++++++++.+.+++|||+|||+|.||+||+++..+.
T Consensus 255 -----G~-~~~~i~aiv~v~~~~~~~sPCG~CRqvL~e~~pdv~l~y~~ 297 (298)
T 4eg2_A 255 -----GE-SFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLS 297 (298)
T ss_dssp -----TC-CGGGEEEEEEEECTTCSSCCHHHHHHHHHHHCTTCCEEEEE
T ss_pred -----CC-CccCeEEEEEEeCCCCCcCCcHHHHHHHHHhCCCCceEEEe
Confidence 64 34589999999998889999999999999999999987653
No 2
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=100.00 E-value=1.6e-76 Score=556.42 Aligned_cols=267 Identities=39% Similarity=0.620 Sum_probs=245.1
Q ss_pred CCCCccc--ccHHHHHHHHHHcCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccCh
Q 022046 1 MERPRFV--IEAAEAESMAQKSGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHA 78 (303)
Q Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCA 78 (303)
|..+.|. |++++++++++++|++.++.|+++++++++++|+|||+|+|||+++++||+||+|+||||++|++++++||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CA 103 (294)
T 1ctt_A 24 LADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHA 103 (294)
T ss_dssp TTSTTCCSEECHHHHHHHHHHSCCCHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCH
T ss_pred HcCCCcccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEEEEEcCCccCccCCCccCH
Confidence 4556666 99999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred hHHHHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCCCCCCcc
Q 022046 79 EQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLDKDVPLL 158 (303)
Q Consensus 79 Er~Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~~~~p~l 158 (303)
||+||++|+++|+++|++|+|+.+|||+|||+|.||+++++++|++.+.+ .++|+||||++|+|+||..+ +.|
T Consensus 104 Er~Ai~~A~~~G~~~~~~iav~~~PCG~CRQ~l~E~~~~~~~~i~~~~~~-----~~~l~eLLP~~F~~~~l~~~--~~l 176 (294)
T 1ctt_A 104 EQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGRE-----AHALRDYLPDAFGPKDLEIK--TLL 176 (294)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESSCCCHHHHHHHTTBTTGGGCEEECTTSC-----CEEHHHHSTTCCCGGGGTCC--CCB
T ss_pred HHHHHHHHHHcCCCcEEEEEEEcCCCHHHHHHHHHhCCCCCeEEEEECCC-----CCcHHHhCCCCCChhhcCcc--hhc
Confidence 99999999999999999999999999999999999964478999997654 27899999999999999766 589
Q ss_pred ccccCCCceeeeccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHH
Q 022046 159 LETHQNGMSFNLCNGQIPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAAL 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al 238 (303)
|++++|.+++ .+ ++|+++|+++++++|+|||+|+|||||+++||+||+|+|+||++|++++||||+||
T Consensus 177 l~~~~~~~~~----~~--------~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai 244 (294)
T 1ctt_A 177 MDEQDHGYAL----TG--------DALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGAL 244 (294)
T ss_dssp TSCCCCCCCC----CS--------SHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHH
T ss_pred cccccccccc----Ch--------HHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHH
Confidence 9999888864 11 48999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEE
Q 022046 239 VAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVF 292 (303)
Q Consensus 239 ~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~ 292 (303)
++|+++ |. +.++|++++++++.+.+++|||+|||+|.||+ ++++++.+
T Consensus 245 ~~av~~-----G~-~~~~i~~i~vv~~~~~~~sPCG~CRq~L~ef~~~~~~v~~~ 293 (294)
T 1ctt_A 245 ILLNLK-----GY-DYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLL 293 (294)
T ss_dssp HHHHHT-----TC-CGGGEEEEEEEECTTCSSCCHHHHHHHHHHHTCCCEEEEEC
T ss_pred HHHHHc-----CC-CcCCEEEEEEEecCCCCcCccHHHHHHHHHHCCCCeEEEEe
Confidence 999999 53 34689999999998889999999999999998 78887653
No 3
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.8e-42 Score=292.65 Aligned_cols=123 Identities=30% Similarity=0.456 Sum_probs=112.8
Q ss_pred cCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCC--cEEEE
Q 022046 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP--RLQHL 97 (303)
Q Consensus 20 ~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~--~i~ai 97 (303)
.+|+.. +|+++|++++++||+|||+|+||||++++||++|+||||||++|++ ++||||+||++|+++|++ +|++|
T Consensus 7 ~~~~~~-~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iytG~NVEnasy~~--t~CAEr~Ai~~Avs~G~~~~~i~ai 83 (138)
T 3dmo_A 7 HHMTHH-ALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGL--CNCAERTALFSALAAGYRPGEFAAI 83 (138)
T ss_dssp TTCCHH-HHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGG--CBCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccHH-HHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEEEEEeeccccccc--ccCHHHHHHHHHHHcCCCcccEEEE
Confidence 345544 4999999999999999999999999999999999999999999864 999999999999999999 99999
Q ss_pred EEEe------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCC
Q 022046 98 AVSA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGP 147 (303)
Q Consensus 98 av~~------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~ 147 (303)
+|++ +|||.|||+|+||.+ ++++|++.+.+|.. +.++|+||||++|++
T Consensus 84 avv~~~~~~~~PCG~CRQ~l~Ef~~-~~~~V~~~~~~g~~-~~~tl~eLLP~~F~~ 137 (138)
T 3dmo_A 84 AVVGETHGPIAPCGACRQVMIELGK-PTLEVVLTNMQGDV-RVTSAGDLLPDAFYL 137 (138)
T ss_dssp EEEESCSSSCCCCHHHHHHHHHHHC-TTCEEEEECSSSCE-EEEEHHHHSTTCCCC
T ss_pred EEEcCCCCccCCCHHHHHHHHHhCC-CCcEEEEECCCCCE-EEeEHHHhCcCccCC
Confidence 9996 899999999999974 68999999888865 689999999999986
No 4
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=100.00 E-value=7.4e-42 Score=290.26 Aligned_cols=127 Identities=28% Similarity=0.450 Sum_probs=109.4
Q ss_pred cCCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEE
Q 022046 20 SGLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAV 99 (303)
Q Consensus 20 ~~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav 99 (303)
.+|+ +++|+++|++++++||+|||+|+||||++++||+||+|+||||++|++ ++||||+||++|+++|+++|++|+|
T Consensus 8 ~~~~-~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~~G~NvEnasy~~--t~CAEr~Ai~~Avs~G~~~~~aiav 84 (141)
T 2d30_A 8 HHMN-SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGL--CNCAERTALFKAVSEGDKEFVAIAI 84 (141)
T ss_dssp --CC-HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEEEEECBCCSSGGG--CBCHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccC-HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEEEeeccccCCCCc--ccCHHHHHHHHHHHCCCCceEEEEE
Confidence 3454 455999999999999999999999999999999999999999999864 9999999999999999999999999
Q ss_pred Ee------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 100 SA------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 100 ~~------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
++ +|||+|||+|.||.+ ++++|++.+.+|.. +.++|+||||++|+|+||.
T Consensus 85 ~~~~~~~~~PCG~CRQ~l~E~~~-~~~~V~~~~~~g~~-~~~~l~eLLP~~F~~~~l~ 140 (141)
T 2d30_A 85 VADTKRPVPPCGACRQVMVELCK-QDTKVYLSNLHGDV-QETTVGELLPGAFLAEDLH 140 (141)
T ss_dssp EESCSSCCCCCHHHHHHHHHHSC-TTCEEEEECSSSCE-EEEEHHHHSTTC-------
T ss_pred EeCCCCccCcCHHHHHHHHHhcC-CCeEEEEECCCCCE-EEEEHHHhCCCCCChhhcC
Confidence 96 899999999999964 79999999888765 6799999999999999983
No 5
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=100.00 E-value=8.4e-41 Score=285.82 Aligned_cols=118 Identities=36% Similarity=0.510 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe---
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA--- 101 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~--- 101 (303)
.++|+++|+++++++|+|||+|+||||++++||+||+||||||++|++ ++||||+||++|+++|+++|++|+|++
T Consensus 25 ~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~tG~NvEnasy~~--t~CAEr~Ai~~Avs~G~~~i~aiavv~~~~ 102 (150)
T 3mpz_A 25 WNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGL--GLCAECAVVCALHSGGGGRLVALSCVGPDG 102 (150)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCSSGGG--CBCHHHHHHHHHHHTTCCCEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEEEEEecccccCCc--cccHHHHHHHHHHHcCCCceEEEEEEcCCC
Confidence 467999999999999999999999999999999999999999999864 999999999999999999999999997
Q ss_pred ---CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 102 ---APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 ---~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|+||++ +++ ++.+.+| .++|+||||++|+|+||.
T Consensus 103 ~~~~PCG~CRQ~L~Ef~~-~~v--~v~~~~g----~~tl~eLLP~~F~~~~L~ 148 (150)
T 3mpz_A 103 GVLMPCGRCRQVLLEHGG-PEL--LIDHAHG----PRPLRELLPDAFGPDDLG 148 (150)
T ss_dssp CBCCCCHHHHHHHHHHHC-TTC--EECCTTC----CEEHHHHSTTCCCC----
T ss_pred CccCCCHHHHHHHHHhCC-CCE--EEEcCCC----cEEHHHhCCCCCChhhhc
Confidence 899999999999974 454 4455555 379999999999999985
No 6
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=100.00 E-value=2.3e-40 Score=280.09 Aligned_cols=120 Identities=29% Similarity=0.472 Sum_probs=101.0
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe--
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA-- 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~-- 101 (303)
++++|+++|+++++++|+|||+|+||||++++||+||+|+||||++|++ ++||||+||++|+++|+++|++|+|++
T Consensus 9 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~~G~NvEnasy~~--t~CAEr~Ai~~Av~~G~~~i~aiav~~~~ 86 (138)
T 3r2n_A 9 NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGL--ALCAECSMISALYATGGGRLVAVYCVDGN 86 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCSSGGG--CBCHHHHHHHHHHHTTCCCEEEEEEECTT
T ss_pred hHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEEEEEcccccCCCC--CcCHHHHHHHHHHHcCCCceEEEEEEcCC
Confidence 4567999999999999999999999999999999999999999999864 999999999999999999999999995
Q ss_pred ----CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCC
Q 022046 102 ----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLD 152 (303)
Q Consensus 102 ----~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~ 152 (303)
+|||+|||+|.||.+ ++ |++.+.+| .++|+||||++|+|++|..
T Consensus 87 ~~~~~PCG~CRQ~l~E~~~-~~--i~v~~~~g----~~~l~eLLP~~F~~~~l~~ 134 (138)
T 3r2n_A 87 GDSLMPCGRCRQLLYEHGG-PE--LKIMTPKG----VQTMAQLLPQAFNPQERIF 134 (138)
T ss_dssp SCBCCCCHHHHHHHHHHHC-TT--CEEEETTE----EEEHHHHSCC---------
T ss_pred CCcCCCCHHHHHHHHHhCC-CC--EEEECCCC----cEEHHHhCCCCCChhhhcc
Confidence 899999999999974 44 56666654 4899999999999999853
No 7
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=100.00 E-value=1.2e-39 Score=276.92 Aligned_cols=123 Identities=29% Similarity=0.489 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCc-EEEEEEEe--
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPR-LQHLAVSA-- 101 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~-i~aiav~~-- 101 (303)
+++|+++|+++++++|+|||+|+||||++++||+||+|+||||++|+. ++||||+||++|+++|+++ |++|+|++
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~~G~NvEnasy~~--t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSN--CICAERSAMIQVLMAGHRSGWKCMVICGDS 88 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEEEEECBCCSSGGG--CBCHHHHHHHHHHHTTCCSCCCEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEEEEEeecccCCCC--CcCHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 567999999999999999999999999999999999999999999864 9999999999999999988 99999997
Q ss_pred -----CCChhhHHHHHHhhCCCccEEEEecCCCceeeEe-cccccCCCCcCCCCCC
Q 022046 102 -----APCGHCRQFLQELRNTSDINICITSINSNERKYH-PLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 -----~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~-~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|.||.+ ++++|++.+.+|.. +.+ +|+||||++|+|+||.
T Consensus 89 ~~~~~~PCG~CRq~l~e~~~-~~~~v~~~~~~g~~-~~~~~l~eLLP~~f~~~~l~ 142 (142)
T 1r5t_A 89 EDQCVSPCGVCRQFINEFVV-KDFPIVMLNSTGSR-SKVMTMGELLPMAFGPSHLN 142 (142)
T ss_dssp SSSCCCCCHHHHHHHHTTSC-TTCEEEEECSSSSS-EEEEEHHHHSTTCCCGGGCC
T ss_pred CCcccCHHHHHHHHHHHhCC-CCEEEEEECCCCCE-EEeCcHHHHCCCCCChhhcC
Confidence 799999999999964 79999999888865 456 9999999999998873
No 8
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=100.00 E-value=1.4e-38 Score=271.55 Aligned_cols=122 Identities=34% Similarity=0.544 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe---
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA--- 101 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~--- 101 (303)
+++|+++|+++++++|+|||+|+||||++++||+||+|+|+||++|+ .++||||+||++|+++|+++|++|+|++
T Consensus 15 ~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~~G~NvEnas~~--~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 15 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYP--LGVCAERTAIQKAISEGYKDFRAIAISSDLQ 92 (146)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGG--GCBCHHHHHHHHHHHTTCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEEEEEeccccCCC--CCcCHHHHHHHHHHhCCCCceEEEEEEeCCC
Confidence 45799999999999999999999999999999999999999999986 4999999999999999999999999995
Q ss_pred ----CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 102 ----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 ----~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|.||+ ++++|++.+.+|.. +.++|+||||++|+++||.
T Consensus 93 ~~~~~PCG~Crq~l~E~~--~~~~v~~~~~~g~~-~~~~l~eLLP~~F~~~~l~ 143 (146)
T 2fr5_A 93 EEFISPCGACRQVMREFG--TDWAVYMTKPDGTF-VVRTVQELLPASFGPEDLQ 143 (146)
T ss_dssp SSCCCCCHHHHHHHHHTC--SSCEEEEECTTSCE-EEEEHHHHSTTCCCGGGGT
T ss_pred CcccCCCHHHHHHHHHhC--CCCEEEEECCCCCE-EEEEHHHhCCCCCChHHHh
Confidence 59999999999996 79999999888865 5789999999999999884
No 9
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=100.00 E-value=2.5e-37 Score=260.89 Aligned_cols=124 Identities=34% Similarity=0.517 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe---
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA--- 101 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~--- 101 (303)
+++|+++|.++++++|+|||+|+|||+++++||+||+|+|+||++|+ .++||||+||.+|+++|+++|++++++.
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~~G~Nvena~~~--~t~cAE~~Ai~~A~~~G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYS--MCNCAEATALFKAVSEGDTEFQMLAVAADTP 80 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGG--GCBCHHHHHHHHHHHHTCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEEEEeCcccCCCC--CccCHHHHHHHHHHHCCCCCeEEEEEEeCCC
Confidence 46799999999999999999999999999999999999999999986 4999999999999999999999999996
Q ss_pred ---CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCCC
Q 022046 102 ---APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLLD 152 (303)
Q Consensus 102 ---~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~~ 152 (303)
+|||+|||+|.||++ ++++|++.+.+|.. +.++|+||||++|+|+||.+
T Consensus 81 ~~~~PCg~Crq~l~e~~~-~~~~v~~~~~~g~~-~~~~l~eLLP~~f~~~~l~~ 132 (136)
T 1uwz_A 81 GPVSPCGACRQVISELCT-KDVIVVLTNLQGQI-KEMTVEELLPGAFSSEDLHD 132 (136)
T ss_dssp SSCCCCHHHHHHHHHHSC-TTCEEEEECSSSCE-EEEEHHHHSTTCCCGGGC--
T ss_pred CccCHHHHHHHHHHHcCC-CCcEEEEECCCCCE-EEEEHHHhCCCCCCchHhcc
Confidence 799999999999964 78999999888765 68999999999999999853
No 10
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=100.00 E-value=8.3e-37 Score=263.27 Aligned_cols=116 Identities=26% Similarity=0.404 Sum_probs=105.5
Q ss_pred hhhhHHHHHHHHHhhcCCCCCC-CceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe-
Q 022046 24 VLQLLPTLVKSAQTLARPPISK-FHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA- 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~-f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~- 101 (303)
++++|+++|++++++ +|||+ |+||||++++||++|+|||||| |++ ++||||+||++|+++|+++|++|++++
T Consensus 30 ed~~Li~~A~~a~~~--~PyS~~f~VGAAll~~dG~i~tG~NVEn--~~~--~lCAEr~Ai~~Avs~G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 30 AGQNLIDTATSVING--IPVSDFYSVASAAISDDGRVFSGVNVYH--FNG--GPCAELVVLGVAAAAGATKLTHIVAIAN 103 (158)
T ss_dssp HHHHHHHHHHHHHHT--SCCCSSSCEEEEEEETTSCEEEEECCCC--TTT--CCCHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred HHHHHHHHHHHHHHh--CCCCCCCcEEEEEEeCCCCEEEEEcccc--CCc--cccHHHHHHHHHHHhCCCceEEEEEEeC
Confidence 567899999999875 89997 9999999999999999999997 654 899999999999999999999998885
Q ss_pred ------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCC
Q 022046 102 ------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPND 149 (303)
Q Consensus 102 ------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~ 149 (303)
+|||.|||+|+||. ++++|++.+.+| . +.++|+||||++|++++
T Consensus 104 ~~~~~~~PCG~CRQvL~Ef~--~~~~vil~~~~g-~-~~~~l~eLLP~~F~~d~ 153 (158)
T 3oj6_A 104 EGRGILSPCGRCRQVLADLH--PGIKAIVIGKEG-P-KMVAVEELLPSIYAWDK 153 (158)
T ss_dssp TTTEEECCCHHHHHHHHHHS--TTCEEEECCSSS-C-EEEEGGGGSSSCCCCCT
T ss_pred CCCCcCCCCHHHHHHHHHhC--CCCEEEEEcCCC-c-EEEEHHHhCcCCCCCcc
Confidence 79999999999996 689999998887 3 68999999999999854
No 11
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.5e-36 Score=256.48 Aligned_cols=111 Identities=26% Similarity=0.317 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAAL 262 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~ 262 (303)
.+|+++|+++++++|+|||+|+||||++++||+||+|+||||++|+.++||||+||++|+++ |.+ ..+|++|++
T Consensus 12 ~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~-----G~~-~~~i~aiav 85 (138)
T 3dmo_A 12 HALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAA-----GYR-PGEFAAIAV 85 (138)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-----TCC-TTCEEEEEE
T ss_pred HHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHc-----CCC-cccEEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999 651 128999999
Q ss_pred EeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 263 VEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 263 v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
+.+.+.+++|||+|||+|+||+ ++++|++.+.+|+.+
T Consensus 86 v~~~~~~~~PCG~CRQ~l~Ef~~~~~~V~~~~~~g~~~ 123 (138)
T 3dmo_A 86 VGETHGPIAPCGACRQVMIELGKPTLEVVLTNMQGDVR 123 (138)
T ss_dssp EESCSSSCCCCHHHHHHHHHHHCTTCEEEEECSSSCEE
T ss_pred EcCCCCccCCCHHHHHHHHHhCCCCcEEEEECCCCCEE
Confidence 9988889999999999999996 899999999888654
No 12
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=100.00 E-value=8.1e-37 Score=259.56 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=111.7
Q ss_pred ChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe-
Q 022046 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA- 101 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~- 101 (303)
+++++|+++|+++++++|+||| +||||++++||+||+|+|+||++|+. ++||||+||++|+++|++.++.++|++
T Consensus 2 ~~~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~~G~NvEnas~~~--~lcAEr~Ai~~a~~~G~~~~~~~~v~~~ 77 (142)
T 3b8f_A 2 NIEQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIYTSVAPDVINAST--ELCMETGAILEAHKFQKKVTHSICLARE 77 (142)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEEEECCCCCSSGGG--CCCTTHHHHHHHHHHTCCEEEEEEEEES
T ss_pred cHHHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEEEEECcccccCCc--ccCHHHHHHHHHHHCCCCcEEEEEEEec
Confidence 4678899999999999999999 99999999999999999999999865 999999999999999999899999885
Q ss_pred ---------CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCCCCC
Q 022046 102 ---------APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPNDLL 151 (303)
Q Consensus 102 ---------~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~~l~ 151 (303)
+|||+|||+|.||+ ++++|++.+.+|.. +.++|+||||++|+|+|+.
T Consensus 78 ~~~~~~~~~sPCG~CRq~l~e~~--~~~~v~~~~~~g~~-~~~~l~eLLP~~f~~~~~~ 133 (142)
T 3b8f_A 78 NEHSELKVLSPCGVCQERLFYWG--PEVQCAITNAKQDI-IFKPLKELQPYHWTEAYHD 133 (142)
T ss_dssp STTSCCEECCCCHHHHHHHGGGC--TTCEEECCCTTCCC-CEEEHHHHCTTCGGGGGHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHhC--CCCEEEEECCCCCE-EEEEHHHhCCCCCCchhhc
Confidence 59999999999994 79999998887754 5789999999999998864
No 13
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=100.00 E-value=1.6e-35 Score=251.25 Aligned_cols=110 Identities=24% Similarity=0.354 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 182 ~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
|++|+++|+++++++|+|||+|+||||++++||+||+|+||||++|++++||||+||++|+++ |. ++|++|+
T Consensus 12 ~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-----G~---~~~~aia 83 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-----GD---KEFVAIA 83 (141)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-----TC---CCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-----CC---CceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999 65 6899999
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 262 LVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
++.+.+.+++|||+|||+|.||+ ++++|++.+.+|+.+
T Consensus 84 v~~~~~~~~~PCG~CRQ~l~E~~~~~~~V~~~~~~g~~~ 122 (141)
T 2d30_A 84 IVADTKRPVPPCGACRQVMVELCKQDTKVYLSNLHGDVQ 122 (141)
T ss_dssp EEESCSSCCCCCHHHHHHHHHHSCTTCEEEEECSSSCEE
T ss_pred EEeCCCCccCcCHHHHHHHHHhcCCCeEEEEECCCCCEE
Confidence 99988888999999999999998 899999999887654
No 14
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=100.00 E-value=3.3e-35 Score=246.24 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=102.9
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEe--
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSA-- 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~-- 101 (303)
++++|+++|+++++++|+| |+|+||||++++||+||+|+|+| +|+ .++||||+||++|+++|+++|+++++++
T Consensus 6 ~~~~L~~~A~~a~~~ay~~-s~f~VGAal~~~dG~i~~G~NvE--~~~--~t~cAE~~Ai~~A~~~G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 6 EESTLIERATATINSIPIS-EDYSVASAALSSDGRIFTGVNVY--HFT--GGPCAELVVLGTAAAAAAGNLTCIVAIGNE 80 (130)
T ss_dssp HHHHHHHHHHHHHHHSCCC-SSSCEEEEEEETTSCEEEEECCC--CTT--TCCCHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhhCCC-CCCCEEEEEEecCCeEEEEeccc--cCC--cccCHHHHHHHHHHHcCCCceEEEEEEECC
Confidence 4567999999999999997 99999999999999999999999 465 4999999999999999999999999875
Q ss_pred -----CCChhhHHHHHHhhCCCccEEEEecCCCceeeEecccccCCCCcCCC
Q 022046 102 -----APCGHCRQFLQELRNTSDINICITSINSNERKYHPLSHLLPDRFGPN 148 (303)
Q Consensus 102 -----~PCG~CRQ~L~E~~~~~~~~V~~~~~~~~~~~~~~l~eLLP~~f~~~ 148 (303)
+|||+|||+|.||+ ++++|++.+.+|.. +.++|+||||++|+|+
T Consensus 81 ~~~~~~PCG~Crq~l~e~~--~~~~v~~~~~~g~~-~~~~l~eLLP~~f~~~ 129 (130)
T 2z3g_A 81 NRGILSPCGRCRQVLLDLH--PGIKAIVKDSDGQP-TAVGIRELLPSGYVWE 129 (130)
T ss_dssp TTEEECCCHHHHHHHHHHC--TTCEEEEECTTSCE-EEEEGGGGSCC-----
T ss_pred CCCccCcCHHHHHHHHHhC--CCCEEEEECCCCCE-EEEEHHHhCcCCCCCC
Confidence 69999999999996 68999999888765 6799999999999874
No 15
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=100.00 E-value=6.4e-35 Score=249.44 Aligned_cols=112 Identities=26% Similarity=0.324 Sum_probs=100.1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCcc
Q 022046 175 IPETENPKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGY 254 (303)
Q Consensus 175 ~~~~~~~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~ 254 (303)
+|..+..|++|+++|+++++++|+|||+|+|||||+++||+||+|+||||++|++++||||+||++|+++ |+
T Consensus 18 ~~~~~~~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-----G~--- 89 (150)
T 3mpz_A 18 GPGSMVNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-----GG--- 89 (150)
T ss_dssp --CCSCCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-----TC---
T ss_pred CCCccHHHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-----CC---
Confidence 3444567899999999999999999999999999999999999999999999999999999999999999 65
Q ss_pred ceeeEEEEEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCC
Q 022046 255 ERIVAAALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGC 296 (303)
Q Consensus 255 ~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~ 296 (303)
++|++|+++.+.+.+++|||+|||+|+||+ +++ +|.+.++
T Consensus 90 ~~i~aiavv~~~~~~~~PCG~CRQ~L~Ef~~~~v--~v~~~~g 130 (150)
T 3mpz_A 90 GRLVALSCVGPDGGVLMPCGRCRQVLLEHGGPEL--LIDHAHG 130 (150)
T ss_dssp CCEEEEEEECTTSCBCCCCHHHHHHHHHHHCTTC--EECCTTC
T ss_pred CceEEEEEEcCCCCccCCCHHHHHHHHHhCCCCE--EEEcCCC
Confidence 689999999888888999999999999998 554 4555555
No 16
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=100.00 E-value=3.3e-34 Score=242.35 Aligned_cols=106 Identities=29% Similarity=0.371 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 181 ~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
.|++|+++|+++++++|+|||+|+|||||+++||+||+|+||||++|++++||||+||++|+++ |+ ++|++|
T Consensus 9 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~-----G~---~~i~ai 80 (138)
T 3r2n_A 9 NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYAT-----GG---GRLVAV 80 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-----TC---CCEEEE
T ss_pred hHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHc-----CC---CceEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999 65 689999
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCC
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGC 296 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~ 296 (303)
+++.+.+.+++|||+|||+|.||+ ++ |++.+.++
T Consensus 81 av~~~~~~~~~PCG~CRQ~l~E~~~~~--i~v~~~~g 115 (138)
T 3r2n_A 81 YCVDGNGDSLMPCGRCRQLLYEHGGPE--LKIMTPKG 115 (138)
T ss_dssp EEECTTSCBCCCCHHHHHHHHHHHCTT--CEEEETTE
T ss_pred EEEcCCCCcCCCCHHHHHHHHHhCCCC--EEEECCCC
Confidence 999888888999999999999998 55 56676665
No 17
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=100.00 E-value=5.4e-34 Score=242.21 Aligned_cols=111 Identities=22% Similarity=0.318 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccce-eeE
Q 022046 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYER-IVA 259 (303)
Q Consensus 181 ~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~-i~~ 259 (303)
.|++|+++|+++++++|+|||+|+|||||+++||+||+|+|+||++|++++||||+||++|+++ |. ++ |++
T Consensus 10 ~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~-----G~---~~~i~~ 81 (142)
T 1r5t_A 10 QLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMA-----GH---RSGWKC 81 (142)
T ss_dssp HHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-----TC---CSCCCE
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHc-----CC---CCceEE
Confidence 4689999999999999999999999999999999999999999999999999999999999999 65 35 999
Q ss_pred EEEEeCCCCCc-CCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 260 AALVEKEDAVV-RQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 260 i~~v~~~~~~~-~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
++++++.+.++ +|||+|||+|.||+ ++++|++.+.+|+.+
T Consensus 82 i~vv~~~~~~~~~PCG~CRq~l~e~~~~~~~v~~~~~~g~~~ 123 (142)
T 1r5t_A 82 MVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRS 123 (142)
T ss_dssp EEEEESCSSSCCCCCHHHHHHHHTTSCTTCEEEEECSSSSSE
T ss_pred EEEEeCCCCcccCHHHHHHHHHHHhCCCCEEEEEECCCCCEE
Confidence 99999887788 99999999999998 899999999888543
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.98 E-value=2.9e-32 Score=232.51 Aligned_cols=111 Identities=20% Similarity=0.298 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 181 ~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
.|++|+++|+++++++|+|||+|+|||||+++||+||+|+|+||++|++++||||+||++|+++ |. ++|+++
T Consensus 14 ~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-----G~---~~l~~i 85 (146)
T 2fr5_A 14 HVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-----GY---KDFRAI 85 (146)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-----TC---CCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-----CC---CceEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999999 65 689999
Q ss_pred EEEeCCCCC-cCCcHHHHHHHHHHCCCCeEEEEeCCCccc
Q 022046 261 ALVEKEDAV-VRQEHAARLLLQVISPKCEFNVFHCGCKKS 299 (303)
Q Consensus 261 ~~v~~~~~~-~~PCG~CRq~L~e~~~~~~v~v~~~~~~~~ 299 (303)
+++.+.+.+ ++|||+|||+|.||+++++|++.+.+|+.+
T Consensus 86 ~v~~~~~~~~~~PCG~Crq~l~E~~~~~~v~~~~~~g~~~ 125 (146)
T 2fr5_A 86 AISSDLQEEFISPCGACRQVMREFGTDWAVYMTKPDGTFV 125 (146)
T ss_dssp EEEESCSSSCCCCCHHHHHHHHHTCSSCEEEEECTTSCEE
T ss_pred EEEeCCCCcccCCCHHHHHHHHHhCCCCEEEEECCCCCEE
Confidence 999887777 899999999999999999999999888644
No 19
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.97 E-value=2.2e-31 Score=224.56 Aligned_cols=110 Identities=23% Similarity=0.315 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 182 ~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+++|+++|+++++++|+|||+|+|||||+++||+||+|+|+||++|++++||||+||.+|+++ |. ++|++++
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-----G~---~~~~~~~ 74 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-----GD---TEFQMLA 74 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-----TC---CCEEEEE
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-----CC---CCeEEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999 65 5899999
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHC-CCCeEEEEeCCCccc
Q 022046 262 LVEKEDAVVRQEHAARLLLQVIS-PKCEFNVFHCGCKKS 299 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~-~~~~v~v~~~~~~~~ 299 (303)
++.+.+.+++|||+|||+|.||+ ++++|++.+.+|+.+
T Consensus 75 l~~~~~~~~~PCg~Crq~l~e~~~~~~~v~~~~~~g~~~ 113 (136)
T 1uwz_A 75 VAADTPGPVSPCGACRQVISELCTKDVIVVLTNLQGQIK 113 (136)
T ss_dssp EEESCSSSCCCCHHHHHHHHHHSCTTCEEEEECSSSCEE
T ss_pred EEeCCCCccCHHHHHHHHHHHcCCCCcEEEEECCCCCEE
Confidence 99887778999999999999998 899999999887654
No 20
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.97 E-value=4.2e-31 Score=224.34 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 182 KERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 182 ~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+++|+++|+++++++|+||| +|||||+++||+||+|+|+||++|++++||||+||++|+++ |. +.++.++
T Consensus 4 ~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~-----G~---~~~~~~~ 73 (142)
T 3b8f_A 4 EQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKF-----QK---KVTHSIC 73 (142)
T ss_dssp HHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHH-----TC---CEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHC-----CC---CcEEEEE
Confidence 57899999999999999999 99999999999999999999999999999999999999999 64 5788888
Q ss_pred EEeCCCC----CcCCcHHHHHHHHHHCCCCeEEEEeCCCccc
Q 022046 262 LVEKEDA----VVRQEHAARLLLQVISPKCEFNVFHCGCKKS 299 (303)
Q Consensus 262 ~v~~~~~----~~~PCG~CRq~L~e~~~~~~v~v~~~~~~~~ 299 (303)
++++.+. +++|||+|||+|.||+++++|++.+.+++.+
T Consensus 74 v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~~~~~g~~~ 115 (142)
T 3b8f_A 74 LARENEHSELKVLSPCGVCQERLFYWGPEVQCAITNAKQDII 115 (142)
T ss_dssp EEESSTTSCCEECCCCHHHHHHHGGGCTTCEEECCCTTCCCC
T ss_pred EEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEEECCCCCEE
Confidence 8876554 6899999999999999999999998877543
No 21
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=99.97 E-value=3.3e-30 Score=222.07 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCC-CcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeE
Q 022046 181 PKERLKYAALEAANKSHAPYSK-CPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVA 259 (303)
Q Consensus 181 ~~~~l~~~A~~a~~~syaPyS~-~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~ 259 (303)
.+++|+++|++++++ +|||+ |+||||++++||+||+|+|||| |+.++||||+||++|+++ |. ++|++
T Consensus 30 ed~~Li~~A~~a~~~--~PyS~~f~VGAAll~~dG~i~tG~NVEn--~~~~lCAEr~Ai~~Avs~-----G~---~~~~a 97 (158)
T 3oj6_A 30 AGQNLIDTATSVING--IPVSDFYSVASAAISDDGRVFSGVNVYH--FNGGPCAELVVLGVAAAA-----GA---TKLTH 97 (158)
T ss_dssp HHHHHHHHHHHHHHT--SCCCSSSCEEEEEEETTSCEEEEECCCC--TTTCCCHHHHHHHHHHHT-----TC---CCEEE
T ss_pred HHHHHHHHHHHHHHh--CCCCCCCcEEEEEEeCCCCEEEEEcccc--CCccccHHHHHHHHHHHh-----CC---CceEE
Confidence 358999999999884 79997 9999999999999999999997 889999999999999999 65 68999
Q ss_pred EEEEeC-CCCCcCCcHHHHHHHHHHCCCCeEEEEeCCC
Q 022046 260 AALVEK-EDAVVRQEHAARLLLQVISPKCEFNVFHCGC 296 (303)
Q Consensus 260 i~~v~~-~~~~~~PCG~CRq~L~e~~~~~~v~v~~~~~ 296 (303)
++++.. .+.+++|||+|||+|+||+++++|++.+.+|
T Consensus 98 i~vv~~~~~~~~~PCG~CRQvL~Ef~~~~~vil~~~~g 135 (158)
T 3oj6_A 98 IVAIANEGRGILSPCGRCRQVLADLHPGIKAIVIGKEG 135 (158)
T ss_dssp EEEEETTTTEEECCCHHHHHHHHHHSTTCEEEECCSSS
T ss_pred EEEEeCCCCCcCCCCHHHHHHHHHhCCCCEEEEEcCCC
Confidence 988876 4567899999999999999999999998887
No 22
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.97 E-value=1e-29 Score=212.81 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 181 PKERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 181 ~~~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
.+++|+++|+++++++|+| |+|+|||||+++||+||+|+|+| +|++++||||+||.+|+++ |. ++|+++
T Consensus 6 ~~~~L~~~A~~a~~~ay~~-s~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-----G~---~~~~~i 74 (130)
T 2z3g_A 6 EESTLIERATATINSIPIS-EDYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-----AA---GNLTCI 74 (130)
T ss_dssp HHHHHHHHHHHHHHHSCCC-SSSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-----TC---CCEEEE
T ss_pred HHHHHHHHHHHHHHhhCCC-CCCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-----CC---CceEEE
Confidence 4578999999999999987 99999999999999999999999 6999999999999999999 65 589999
Q ss_pred EEEeCCCC-CcCCcHHHHHHHHHHCCCCeEEEEeCCCccc
Q 022046 261 ALVEKEDA-VVRQEHAARLLLQVISPKCEFNVFHCGCKKS 299 (303)
Q Consensus 261 ~~v~~~~~-~~~PCG~CRq~L~e~~~~~~v~v~~~~~~~~ 299 (303)
+++.+.+. +++|||+|||+|.||+++++|++.+.+|+.+
T Consensus 75 ~vv~~~~~~~~~PCG~Crq~l~e~~~~~~v~~~~~~g~~~ 114 (130)
T 2z3g_A 75 VAIGNENRGILSPCGRCRQVLLDLHPGIKAIVKDSDGQPT 114 (130)
T ss_dssp EEEETTTTEEECCCHHHHHHHHHHCTTCEEEEECTTSCEE
T ss_pred EEEECCCCCccCcCHHHHHHHHHhCCCCEEEEECCCCCEE
Confidence 99987666 7899999999999999999999999887654
No 23
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=99.95 E-value=1.2e-27 Score=224.54 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=89.5
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCC--cEEEEEEEe
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEP--RLQHLAVSA 101 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~--~i~aiav~~ 101 (303)
..++|+++|+++++++|+|||+|+||||++++||+||+|+||||++|+. ++||||+||++|+++|++ +|+++++++
T Consensus 191 ~~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iytG~nvEnAay~~--slcAEr~Al~~av~~G~~~~~i~aiv~v~ 268 (298)
T 4eg2_A 191 DDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNP--SLPPLQVALAQAMMMGESFEDIEAAALVE 268 (298)
T ss_dssp CCCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTT--CBCHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEEEEEeeeccccCC--CCCHHHHHHHHHHHCCCCccCeEEEEEEe
Confidence 4478999999999999999999999999999999999999999999864 999999999999999986 999999997
Q ss_pred ------CCChhhHHHHHHhhCCCccEEEE
Q 022046 102 ------APCGHCRQFLQELRNTSDINICI 124 (303)
Q Consensus 102 ------~PCG~CRQ~L~E~~~~~~~~V~~ 124 (303)
+|||.|||+|.||+ +|+++-.
T Consensus 269 ~~~~~~sPCG~CRqvL~e~~--pdv~l~y 295 (298)
T 4eg2_A 269 SATGKISHLADTQATLEVIN--PDIPLSY 295 (298)
T ss_dssp CTTCSSCCHHHHHHHHHHHC--TTCCEEE
T ss_pred CCCCCcCCcHHHHHHHHHhC--CCCceEE
Confidence 89999999999997 5666643
No 24
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.95 E-value=1.6e-27 Score=223.88 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCC--CcEEEEEEEe-
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAE--PRLQHLAVSA- 101 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~--~~i~aiav~~- 101 (303)
+++|+++|+++++++|+|||+|+||||++++||+||+|+|+||++|+. ++||||+||++|+++|. ++|+++++++
T Consensus 188 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~tG~NvEnasy~~--tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~ 265 (294)
T 1ctt_A 188 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNP--TLPPLQGALILLNLKGYDYPDIQRAVLAEK 265 (294)
T ss_dssp SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTT--CBCHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEeeecCCCCC--ccCHHHHHHHHHHHcCCCcCCEEEEEEEec
Confidence 467999999999999999999999999999999999999999999865 99999999999999996 5899999997
Q ss_pred -----CCChhhHHHHHHhhCCCccEEEE
Q 022046 102 -----APCGHCRQFLQELRNTSDINICI 124 (303)
Q Consensus 102 -----~PCG~CRQ~L~E~~~~~~~~V~~ 124 (303)
+|||+|||+|.||+. ++++|++
T Consensus 266 ~~~~~sPCG~CRq~L~ef~~-~~~~v~~ 292 (294)
T 1ctt_A 266 ADAPLIQWDATSATLKALGC-HSIDRVL 292 (294)
T ss_dssp TTCSSCCHHHHHHHHHHHTC-CCEEEEE
T ss_pred CCCCcCccHHHHHHHHHHCC-CCeEEEE
Confidence 699999999999964 6787775
No 25
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.40 E-value=2.5e-13 Score=116.74 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=75.1
Q ss_pred CCChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEE--E
Q 022046 21 GLTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQ--H 96 (303)
Q Consensus 21 ~~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~--a 96 (303)
+|+.|+.++++|.+++++++.+ ++++|||+++. ||+|+ +|.|.++.++. .+.|||+.||.+|... |...++ .
T Consensus 3 ~m~~d~~~m~~A~~~A~~a~~~-~~~pVGAviv~-~g~Ii~~G~N~~~~~~~--~~~HAE~~Ai~~a~~~~~~~~l~~~t 78 (159)
T 2b3j_A 3 HMTNDIYFMTLAIEEAKKAAQL-GEVPIGAIITK-DDEVIARAHNLRETLQQ--PTAHAEHIAIERAAKVLGSWRLEGCT 78 (159)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTC--TTCCHHHHHHHHHHHHHTSSCCTTEE
T ss_pred CchHHHHHHHHHHHHHHHhhcC-CCCCEEEEEEE-CCEEEEEEECCCCCCCC--CccCHHHHHHHHHHHHcCCCCcceeE
Confidence 4556778999999999999998 89999999997 99999 89999987654 3899999999999875 544433 3
Q ss_pred EEEEeCCChhhHHHHHHhh
Q 022046 97 LAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 97 iav~~~PCG~CRQ~L~E~~ 115 (303)
+++...||++|+|.|.+++
T Consensus 79 lyvT~EPC~mC~~ai~~ag 97 (159)
T 2b3j_A 79 LYVTLEPCVMCAGTIVMSR 97 (159)
T ss_dssp EEEEECCCHHHHHHHHHTT
T ss_pred EEECCCCcHHHHHHHHHhC
Confidence 4444589999999999986
No 26
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.40 E-value=2.3e-13 Score=114.96 Aligned_cols=89 Identities=24% Similarity=0.231 Sum_probs=74.4
Q ss_pred ChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEE--EEE
Q 022046 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQ--HLA 98 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~--aia 98 (303)
..|+.++++|.+++++++.| ++++|||+++. ||+|+ +|.|.++.++. .+.|||+.||.+|... |...++ .++
T Consensus 2 ~~d~~~m~~A~~~A~~a~~~-~~~~VGAviv~-~g~Ii~~G~N~~~~~~~--~~~HAE~~Ai~~a~~~~~~~~~~~~tly 77 (144)
T 2a8n_A 2 AERTHFMELALVEARSAGER-DEVPIGAVLVL-DGRVIARSGNRTRELND--VTAHAEIAVIRMACEALGQERLPGADLY 77 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTC--TTCCHHHHHHHHHHHHHTCSCCTTCEEE
T ss_pred hhHHHHHHHHHHHHHHhhcC-CCCCEEEEEEE-CCEEEEEEECCCCCCCC--CcCCHHHHHHHHHHHHcCCCccCCeEEE
Confidence 45677899999999999998 89999999997 99999 99999987664 4899999999999875 544333 444
Q ss_pred EEeCCChhhHHHHHHhh
Q 022046 99 VSAAPCGHCRQFLQELR 115 (303)
Q Consensus 99 v~~~PCG~CRQ~L~E~~ 115 (303)
+...||++|+|.|.+++
T Consensus 78 ~T~ePC~mC~~ai~~~~ 94 (144)
T 2a8n_A 78 VTLEPCTMCAAAISFAR 94 (144)
T ss_dssp EEECCBHHHHHHHHHTT
T ss_pred ECCCChHHHHHHHHHHC
Confidence 55589999999999986
No 27
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.35 E-value=1.2e-12 Score=114.06 Aligned_cols=88 Identities=22% Similarity=0.173 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEEE--EEE
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQH--LAV 99 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~a--iav 99 (303)
.++.++++|.++++++|.| ++++|||+++. ||+|+ +|.|.++.++. .+.|||+.||.+|... |...++. +++
T Consensus 22 ~~~~~M~~A~~~A~~a~~~-~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d--~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEK-GEVPVGAIIVK-EGEIISKAHNSVEELKD--PTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTC--TTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred hHHHHHHHHHHHHHhcccC-CCCCEEEEEEE-CCEEEEEEECCCCccCC--cccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 4567889999999999998 89999999997 99999 89999987764 4899999999999875 5444433 333
Q ss_pred EeCCChhhHHHHHHhh
Q 022046 100 SAAPCGHCRQFLQELR 115 (303)
Q Consensus 100 ~~~PCG~CRQ~L~E~~ 115 (303)
...||++|+|.|.+++
T Consensus 98 T~EPC~mC~~ai~~ag 113 (171)
T 1wwr_A 98 TLEPCIMCSYALVLSR 113 (171)
T ss_dssp SSCCBHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHC
Confidence 3489999999999986
No 28
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.31 E-value=7.1e-12 Score=105.76 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+.++++|+++++++|.| ++++|||+|+. ||+|+ +|.|.++..++++.|||+.||.++.... |.. .++...
T Consensus 5 ~~~m~~A~~~A~~a~~~-~~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~----~~~---~~~~~t 75 (144)
T 2a8n_A 5 THFMELALVEARSAGER-DEVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL----GQE---RLPGAD 75 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH----TCS---CCTTCE
T ss_pred HHHHHHHHHHHHHhhcC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHc----CCC---ccCCeE
Confidence 57889999999999998 79999999998 99999 9999999999999999999999998863 222 233323
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHCCCCeEE
Q 022046 262 LVEKEDAVVRQEHAARLLLQVISPKCEFN 290 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~~~~~v~ 290 (303)
++. ...||++|++.|.+++.+--|+
T Consensus 76 ly~----T~ePC~mC~~ai~~~~i~rvv~ 100 (144)
T 2a8n_A 76 LYV----TLEPCTMCAAAISFARIRRLYY 100 (144)
T ss_dssp EEE----EECCBHHHHHHHHHTTCSEEEE
T ss_pred EEE----CCCChHHHHHHHHHHCCCEEEE
Confidence 322 1379999999999998443333
No 29
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.28 E-value=1.9e-12 Score=111.47 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=73.5
Q ss_pred ChhhhHHHHHHHHHhhcCCCCCCCceEEEEE-eCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHcCCCcE--EEEE
Q 022046 23 TVLQLLPTLVKSAQTLARPPISKFHVGAVGL-GSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRL--QHLA 98 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl-~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i--~aia 98 (303)
..|+.++++|.+++++++.|. +++|||+++ ++||+|+ +|.|.++.++. .+.|||+.||.+|...|...+ -.++
T Consensus 12 ~~d~~~M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~--~t~HAE~~Ai~~a~~~~~~~~~~~tlY 88 (161)
T 1p6o_A 12 KWDQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGS--ATLHGEISTLENCGRLEGKVYKDTTLY 88 (161)
T ss_dssp TTHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTC--SSCCHHHHHHHHHCSCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCC--cccCHHHHHHHHHHHhCCccccccccc
Confidence 446778899999999999984 999999999 5999999 99999986543 489999999999977643222 3445
Q ss_pred EEeCCChhhHHHHHHhh
Q 022046 99 VSAAPCGHCRQFLQELR 115 (303)
Q Consensus 99 v~~~PCG~CRQ~L~E~~ 115 (303)
+...||++|++.|.+++
T Consensus 89 vT~EPC~mC~~ai~~ag 105 (161)
T 1p6o_A 89 TTLSPCDMCTGAIIMYG 105 (161)
T ss_dssp EEECCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHhC
Confidence 55589999999999996
No 30
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.27 E-value=5.5e-12 Score=109.78 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+.++++|+++++++|.| ++++|||+|+. ||+|+ +|.|.++..++++.|||+.||.++...+ |. ..++...
T Consensus 24 ~~~M~~A~~~A~~a~~~-~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~----g~---~~l~~~t 94 (171)
T 1wwr_A 24 EYFLKVALREAKRAFEK-GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL----NT---KYLEGCE 94 (171)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH----TC---SCCTTEE
T ss_pred HHHHHHHHHHHHhcccC-CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHc----CC---CccCceE
Confidence 67899999999999998 79999999997 99999 8999999999999999999999998862 22 2344444
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHCCC
Q 022046 262 LVEKEDAVVRQEHAARLLLQVISPK 286 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~~~ 286 (303)
++. ...||++|++.|.+++.+
T Consensus 95 lYv----T~EPC~mC~~ai~~agi~ 115 (171)
T 1wwr_A 95 LYV----TLEPCIMCSYALVLSRIE 115 (171)
T ss_dssp EEE----SSCCBHHHHHHHHHTTCS
T ss_pred EEE----CCCChHHHHHHHHHHCCC
Confidence 432 247999999999999743
No 31
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.27 E-value=6.9e-12 Score=107.68 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+.+++.|+++++++|.+ ++++|||+|+. ||+|+ +|.|.++..++++.|||+.||.++...+ |. .+++...
T Consensus 8 ~~~m~~A~~~A~~a~~~-~~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~----~~---~~l~~~t 78 (159)
T 2b3j_A 8 IYFMTLAIEEAKKAAQL-GEVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL----GS---WRLEGCT 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH----TS---SCCTTEE
T ss_pred HHHHHHHHHHHHHhhcC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHc----CC---CCcceeE
Confidence 46889999999999998 79999999998 99998 8999999999999999999999998863 22 2333333
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHCCCC
Q 022046 262 LVEKEDAVVRQEHAARLLLQVISPKC 287 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~~~~ 287 (303)
++. ...||++|++.|.+++.+-
T Consensus 79 lyv----T~EPC~mC~~ai~~agi~r 100 (159)
T 2b3j_A 79 LYV----TLEPCVMCAGTIVMSRIPR 100 (159)
T ss_dssp EEE----EECCCHHHHHHHHHTTCSE
T ss_pred EEE----CCCCcHHHHHHHHHhCCCe
Confidence 332 1479999999999998443
No 32
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.23 E-value=4.4e-11 Score=104.68 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=69.2
Q ss_pred CChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCC-------------------CCCCCCccChhHH
Q 022046 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFP-------------------GLPLHQSIHAEQF 81 (303)
Q Consensus 22 ~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~-------------------s~~~~~~vCAEr~ 81 (303)
++.|+.++++|.++++++++| +++|||+++++||+|+ +|.|.+.. .|+ .++|||++
T Consensus 10 ~~~d~~~M~~A~~~A~~s~~p--~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~--~t~HAE~~ 85 (178)
T 2w4l_A 10 LEWPEYFMAVAFLSAQRSKDP--NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYP--YVCHAELN 85 (178)
T ss_dssp CCHHHHHHHHHHHHHTTCCCS--SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTT--TCBCHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccC--CcCCHHHH
Confidence 455778999999999999998 9999999999999999 99999853 232 37999999
Q ss_pred HHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhh
Q 022046 82 LITNLILNAEPRLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 82 Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
||.+|....-+. -.+++...||++|++.|.+++
T Consensus 86 AI~~a~g~~~~g-~tlYvTlePC~~Ca~aIi~ag 118 (178)
T 2w4l_A 86 AIMNKNLTDVKG-CSMYVALFPCNECAKLIIQAG 118 (178)
T ss_dssp HHHC----CCTT-CEEEEEECCCHHHHHHHHHTT
T ss_pred HHHHhcCCCccc-cEEEEeCCcHHHHHHHHHHHC
Confidence 999874211111 245555689999999999986
No 33
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.20 E-value=5.4e-11 Score=104.69 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=71.5
Q ss_pred CChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCC---------------CCCCCCccChhHHHHHH
Q 022046 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFP---------------GLPLHQSIHAEQFLITN 85 (303)
Q Consensus 22 ~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~---------------s~~~~~~vCAEr~Ai~~ 85 (303)
++.|+.++++|.+++++++.| +++|||+|+. ||+|+ +|.|.... +|. .+.|||++||.+
T Consensus 39 ~~~de~~M~~A~~~A~~s~~~--~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~--~t~HAE~~AI~~ 113 (184)
T 2hvw_A 39 LSWQDYFMANAELISKRSTCN--RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCI--RTVHAEMNALIQ 113 (184)
T ss_dssp CCHHHHHHHHHHHHGGGCCCT--TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEEC--SEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccC--CccCHHHHHHHH
Confidence 456778999999999999987 9999999885 99998 79999643 232 389999999999
Q ss_pred HHHcCCC-cEEEEEEEeCCChhhHHHHHHhh
Q 022046 86 LILNAEP-RLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 86 Av~~G~~-~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
|...|.. +=-.|++...||++|++.|.+++
T Consensus 114 A~~~g~~l~g~tlYvTlEPC~mCa~aIi~ag 144 (184)
T 2hvw_A 114 CAKEGISANNTEIYVTHFPCINCTKALLQAG 144 (184)
T ss_dssp HHHHTCCCTTEEEEEEECCCHHHHHHHHHHT
T ss_pred HHHcCCCceeEEEEECCCCHHHHHHHHHHHC
Confidence 9887642 22344555589999999999986
No 34
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.19 E-value=1.3e-11 Score=106.28 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEE-eCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIM-DCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~-~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+.+++.|+++++++|.|+ ++||||+|+ ++||+|+ +|.|.++..++++.|||+.||.++... |. ..++..
T Consensus 15 ~~~M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~-----~~---~~~~~~ 85 (161)
T 1p6o_A 15 QKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL-----EG---KVYKDT 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC-----CH---HHHTTE
T ss_pred HHHHHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHh-----CC---cccccc
Confidence 578899999999999886 899999999 5999999 999999998999999999999998654 22 123333
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHCCCC
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVISPKC 287 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~~~~ 287 (303)
.++. -..||++|++.|.+++.+-
T Consensus 86 tlYv----T~EPC~mC~~ai~~agi~r 108 (161)
T 1p6o_A 86 TLYT----TLSPCDMCTGAIIMYGIPR 108 (161)
T ss_dssp EEEE----EECCCHHHHHHHHHHTCCE
T ss_pred cccc----CCCCCHHHHHHHHHhCCCE
Confidence 3321 1369999999999998443
No 35
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.18 E-value=1.8e-11 Score=106.10 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEE--EEEEE
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQ--HLAVS 100 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~--aiav~ 100 (303)
|+.++++|.+++++++.+ ++++|||+++ +||+|+ .|.|.++.++. .+.|||+.||.+|... |...+. .+++.
T Consensus 9 d~~~M~~A~~~A~~a~~~-~~~pVGAviV-~~g~Ii~~G~N~~~~~~d--~t~HAE~~Ai~~a~~~~~~~~l~~~tlYvT 84 (168)
T 1z3a_A 9 HEYWMRHALTLAKRAWDE-REVPVGAVLV-HNNRVIGEGWNRPIGRHD--PTAHAEIMALRQGGLVMQNYRLIDATLYVT 84 (168)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSCCCEEEEE-ETTEEEEEEECCHHHHTC--TTCCHHHHHHHHHHHHHTSSCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhc-CCCcEEEEEE-ECCEEEEEEEcccccCCC--cchhHHHHHHHHHHHHcCCCcccccEEEEc
Confidence 566889999999999987 8999999999 699999 89999987654 4899999999999875 333222 44555
Q ss_pred eCCChhhHHHHHHhh
Q 022046 101 AAPCGHCRQFLQELR 115 (303)
Q Consensus 101 ~~PCG~CRQ~L~E~~ 115 (303)
.-||++|++.|.+++
T Consensus 85 lEPC~mC~~ai~~ag 99 (168)
T 1z3a_A 85 LEPCVMCAGAMIHSR 99 (168)
T ss_dssp ECCCHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHC
Confidence 589999999999996
No 36
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.14 E-value=1.4e-10 Score=100.51 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+.+++.|+++++++|.+ +++||||+|+ .||+|+ +|.|.++..++++.|||+.||.++...+ |.. .++...
T Consensus 10 ~~~M~~A~~~A~~a~~~-~~~pVGAviV-~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~----~~~---~l~~~t 80 (168)
T 1z3a_A 10 EYWMRHALTLAKRAWDE-REVPVGAVLV-HNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM----QNY---RLIDAT 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH----TSS---CCTTCE
T ss_pred HHHHHHHHHHHHHhhhc-CCCcEEEEEE-ECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHc----CCC---cccccE
Confidence 57889999999999987 7899999999 599999 8999999999999999999999998872 221 222222
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHCCC
Q 022046 262 LVEKEDAVVRQEHAARLLLQVISPK 286 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~~~ 286 (303)
++. -..||++|++.|.+++.+
T Consensus 81 lYv----TlEPC~mC~~ai~~agi~ 101 (168)
T 1z3a_A 81 LYV----TLEPCVMCAGAMIHSRIG 101 (168)
T ss_dssp EEE----EECCCHHHHHHHHHHTCS
T ss_pred EEE----cCCCcHHHHHHHHHHCcC
Confidence 221 146999999999999843
No 37
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.10 E-value=2.3e-10 Score=100.63 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeec---------------cCCCCCCCCHHHHHHHHHHHhCC
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYME---------------SAAYNPSLGPVQAALVAYLAAGG 246 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvE---------------naa~~~slcAEr~Al~~a~~~~~ 246 (303)
+.+++.|+++++++++| +++|||+|+. ||+|+ +|.|.. |..|+++.|||+.||.++...
T Consensus 43 e~~M~~A~~~A~~s~~~--~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~-- 117 (184)
T 2hvw_A 43 DYFMANAELISKRSTCN--RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE-- 117 (184)
T ss_dssp HHHHHHHHHHGGGCCCT--TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCC--CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc--
Confidence 46899999999999987 8899999995 99998 799984 556789999999999999888
Q ss_pred CCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHC
Q 022046 247 SGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 247 ~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
|. .++...++.. ..||++|++.|.+++
T Consensus 118 ---g~----~l~g~tlYvT----lEPC~mCa~aIi~ag 144 (184)
T 2hvw_A 118 ---GI----SANNTEIYVT----HFPCINCTKALLQAG 144 (184)
T ss_dssp ---TC----CCTTEEEEEE----ECCCHHHHHHHHHHT
T ss_pred ---CC----CceeEEEEEC----CCCHHHHHHHHHHHC
Confidence 42 3444444321 479999999999998
No 38
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.07 E-value=4.7e-10 Score=98.08 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeecc-------------------CCCCCCCCHHHHHHHHHH
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMES-------------------AAYNPSLGPVQAALVAYL 242 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEn-------------------aa~~~slcAEr~Al~~a~ 242 (303)
+.+++.|++++++|++| +++|||+|+++||+|+ +|.|.++ ..|+.+.|||+.||.++.
T Consensus 14 ~~~M~~A~~~A~~s~~p--~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~ 91 (178)
T 2w4l_A 14 EYFMAVAFLSAQRSKDP--NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN 91 (178)
T ss_dssp HHHHHHHHHHHTTCCCS--SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCCC--CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc
Confidence 46899999999999998 8899999999999999 9999874 457779999999998873
Q ss_pred HhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCCC
Q 022046 243 AAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISPK 286 (303)
Q Consensus 243 ~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~~ 286 (303)
.. .++...++. -..||++|++.|.+++.+
T Consensus 92 g~-----------~~~g~tlYv----TlePC~~Ca~aIi~agI~ 120 (178)
T 2w4l_A 92 LT-----------DVKGCSMYV----ALFPCNECAKLIIQAGIK 120 (178)
T ss_dssp -------------CCTTCEEEE----EECCCHHHHHHHHHTTCC
T ss_pred CC-----------CccccEEEE----eCCcHHHHHHHHHHHCCC
Confidence 21 122222221 136999999999999843
No 39
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=98.93 E-value=3.2e-10 Score=99.27 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=71.0
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcE--EEEEE
Q 022046 24 VLQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRL--QHLAV 99 (303)
Q Consensus 24 ~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i--~aiav 99 (303)
.|+.++++|.+++++++.+ ++++|||+++. ||+|+ .|.|.++.++. .+.|||..||.+|... |...+ -.+++
T Consensus 15 ~d~~~M~~Al~~A~~a~~~-g~~pVGAVIV~-~g~Ii~~G~N~~~~~~d--~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 15 EQTYFMQEALKESEKSLQK-AEIPIGCVIVK-DGEIIGRGHNAREESNQ--AIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTC--TTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHhcccc-CCCCEEEEEEE-CCEEEEEEECCCCCcCC--CccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 4667889999999899886 79999999996 89988 79999876543 4899999999998765 43333 24555
Q ss_pred EeCCChhhHHHHHHhh
Q 022046 100 SAAPCGHCRQFLQELR 115 (303)
Q Consensus 100 ~~~PCG~CRQ~L~E~~ 115 (303)
..-||++|.+.|.+.+
T Consensus 91 TlEPC~mCa~ai~~ag 106 (179)
T 2nx8_A 91 TIEPCVMCSGAIGLAR 106 (179)
T ss_dssp EECCBHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHhC
Confidence 5589999999999986
No 40
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=98.93 E-value=2.8e-09 Score=93.92 Aligned_cols=88 Identities=23% Similarity=0.226 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCC--------------------------------
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLP-------------------------------- 71 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~-------------------------------- 71 (303)
|+..+++|..++.+|+.| +++|||++. +||+|+ +|.|-.+.+.+
T Consensus 3 d~~fM~~A~~~A~rs~~~--~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESKCC--SWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFG 79 (193)
T ss_dssp HHHHHHHHHHHHTTCCCS--SBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-----------------
T ss_pred HHHHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccc
Confidence 566889999999999987 799999888 899999 99999875311
Q ss_pred -------------------CCCccChhHHHHHHHHHcCCC-cEEEEEEEeCCChhhHHHHHHhh
Q 022046 72 -------------------LHQSIHAEQFLITNLILNAEP-RLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 72 -------------------~~~~vCAEr~Ai~~Av~~G~~-~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
+..++|||++||.+|...|.. .=-.++|+..||.+|.+.|.+.+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC~~Ca~aIi~aG 143 (193)
T 1vq2_A 80 STDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSG 143 (193)
T ss_dssp ---CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHT
T ss_pred cccccccchhhccccccccCCCCCCHHHHHHHHHHhcCCCcCCeEEEEeCCCcHHHHHHHHHhC
Confidence 012789999999999877632 12355666699999999999986
No 41
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=98.87 E-value=1.6e-09 Score=93.59 Aligned_cols=88 Identities=20% Similarity=0.109 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcEE--EEEEE
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRLQ--HLAVS 100 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i~--aiav~ 100 (303)
++..+++|.+.+++++.++++++|||+++ +||+|+ +|.|..+.... .+.|||..||.+|... |...+. .++++
T Consensus 11 ~~~~M~~Al~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~~~~d--~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 11 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTTSND--PTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHHHTC--TTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCcCCCC--cccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 44567778888888888888999999999 699988 89999875433 4899999999998764 543332 44555
Q ss_pred eCCChhhHHHHHHhh
Q 022046 101 AAPCGHCRQFLQELR 115 (303)
Q Consensus 101 ~~PCG~CRQ~L~E~~ 115 (303)
.-||++|.+.|.+.+
T Consensus 88 ~EPC~mCa~ai~~ag 102 (164)
T 1wkq_A 88 CEPCPMCLGAIYWAR 102 (164)
T ss_dssp ECCCHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHC
Confidence 589999999999985
No 42
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=98.82 E-value=1.2e-08 Score=89.23 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+.+++.|++++++++.+ ++++|||+|+. ||+|+ +|.|.++..++++.|||..||.++...+ |.. .++...
T Consensus 17 ~~~M~~Al~~A~~a~~~-g~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~----~~~---~l~g~t 87 (179)
T 2nx8_A 17 TYFMQEALKESEKSLQK-AEIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHE----GNW---RLLDTT 87 (179)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH----TSS---CCTTEE
T ss_pred HHHHHHHHHHHHhcccc-CCCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHc----CCC---cccceE
Confidence 46889999999999876 68999999996 99988 7999999989999999999999998763 221 233333
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHC
Q 022046 262 LVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
++. ...||++|.+.|.+.+
T Consensus 88 lYv----TlEPC~mCa~ai~~ag 106 (179)
T 2nx8_A 88 LFV----TIEPCVMCSGAIGLAR 106 (179)
T ss_dssp EEE----EECCBHHHHHHHHHTT
T ss_pred EEE----CCCCcHHHHHHHHHhC
Confidence 332 2479999999999987
No 43
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=98.81 E-value=6.2e-09 Score=89.91 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
+..+++|++.+++++.++++.||||+|+ +||+|. +|.|..+..++++.|||..||-++...+ |.. +++...
T Consensus 12 ~~~M~~Al~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~----~~~---~l~g~t 83 (164)
T 1wkq_A 12 ETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVL----GAY---QLDDCI 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH----TSS---SCTTEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHc----CCC---CcCceE
Confidence 5778899999999998888999999999 599988 8999998888999999999999998753 221 233333
Q ss_pred EEeCCCCCcCCcHHHHHHHHHHC
Q 022046 262 LVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 262 ~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
++. -..||++|.+.|.+.+
T Consensus 84 lYv----T~EPC~mCa~ai~~ag 102 (164)
T 1wkq_A 84 LYT----SCEPCPMCLGAIYWAR 102 (164)
T ss_dssp EEE----EECCCHHHHHHHHHHC
T ss_pred EEE----eCCChHHHHHHHHHHC
Confidence 332 2479999999999997
No 44
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=98.67 E-value=4.8e-08 Score=85.98 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCC-----------------------------------
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAA----------------------------------- 226 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa----------------------------------- 226 (303)
+..+..|+.++++|+.| +++|||+|+ +||+|. +|.|-.+..
T Consensus 4 ~~fM~~A~~~A~rs~~~--~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T 1vq2_A 4 STVLQIAYLVSQESKCC--SWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS 80 (193)
T ss_dssp HHHHHHHHHHHTTCCCS--SBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------
T ss_pred HHHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccc
Confidence 46789999999999987 689999888 899998 999998742
Q ss_pred ------------------CCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHHHHHCC
Q 022046 227 ------------------YNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLLQVISP 285 (303)
Q Consensus 227 ------------------~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L~e~~~ 285 (303)
|.+++|||+.||.++... |. .++...+.. -..||.+|.+.|.+.+-
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~-----g~----~~~g~tLYv----T~ePC~~Ca~aIi~aGI 144 (193)
T 1vq2_A 81 TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAEN-----GS----SIEGATMYV----TLSPCPDCAKAIAQSGI 144 (193)
T ss_dssp --CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHH-----TC----CCTTCEEEE----EECCCHHHHHHHHHHTC
T ss_pred ccccccchhhccccccccCCCCCCHHHHHHHHHHhc-----CC----CcCCeEEEE----eCCCcHHHHHHHHHhCC
Confidence 235899999999999887 42 222222221 14799999999999984
No 45
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=98.13 E-value=1.2e-05 Score=71.09 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=69.3
Q ss_pred CChhhhHHHHHHHHHhhcCCCCCCCceEEEEEeCC-CcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc-CCCcE----
Q 022046 22 LTVLQLLPTLVKSAQTLARPPISKFHVGAVGLGSS-GRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN-AEPRL---- 94 (303)
Q Consensus 22 ~~~~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~d-G~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~-G~~~i---- 94 (303)
+..|+..+++|.+.+.++. ..+..+|||+++..| |+|+ +|.|-.+.... .+.|||..||.+|... |...+
T Consensus 25 ~~~d~~~M~~Al~~A~~a~-~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~--~~~HAE~~Ai~~a~~~~~~~~L~~~~ 101 (197)
T 2g84_A 25 LAAPEARMGYVLELVRANI-AADGGPFAAAVFERDSGLLIAAGTNRVVPGRC--SAAHAEILALSLAQAKLDTHDLSADG 101 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHH-HTTCCSCEEEEEETTTCBEEEEEECCTTTTTC--TTCCHHHHHHHHHHHHHTCSCTTCTT
T ss_pred CHHHHHHHHHHHHHHHhhh-hcCCCCEEEEEEEcCCCEEEEEEECCCCccCC--CccCHHHHHHHHHHHHcCCccccccC
Confidence 3456778888888888887 446789999999877 9977 89997654332 3899999999988654 43332
Q ss_pred ---EEEEEEeCCChhhHHHHHHhh
Q 022046 95 ---QHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 95 ---~aiav~~~PCG~CRQ~L~E~~ 115 (303)
-.++|+.-||-+|-..|...+
T Consensus 102 ~~g~tlYvTlEPC~mCa~Aii~ag 125 (197)
T 2g84_A 102 LPACELVTSAEPCVMCFGAVIWSG 125 (197)
T ss_dssp SCCEEEEEEECCCHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCHHHHHHHHHhC
Confidence 356666699999999999875
No 46
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=97.80 E-value=0.00013 Score=64.42 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCC-CCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccce--ee
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCE-GNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYER--IV 258 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~d-G~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~--i~ 258 (303)
+..++.|++.++++. ..+..||||+|+..| |+|. +|.|-.+....++.|||..||-++...+ |..+... ++
T Consensus 29 ~~~M~~Al~~A~~a~-~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~----~~~~L~~~~~~ 103 (197)
T 2g84_A 29 EARMGYVLELVRANI-AADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL----DTHDLSADGLP 103 (197)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH----TCSCTTCTTSC
T ss_pred HHHHHHHHHHHHhhh-hcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc----CCccccccCcC
Confidence 467888988888887 445679999999977 9977 8999887778899999999999887662 2211111 11
Q ss_pred EEEEEeCCCCCcCCcHHHHHHHHHHC
Q 022046 259 AAALVEKEDAVVRQEHAARLLLQVIS 284 (303)
Q Consensus 259 ~i~~v~~~~~~~~PCG~CRq~L~e~~ 284 (303)
...++. -.-||-+|-..|...+
T Consensus 104 g~tlYv----TlEPC~mCa~Aii~ag 125 (197)
T 2g84_A 104 ACELVT----SAEPCVMCFGAVIWSG 125 (197)
T ss_dssp CEEEEE----EECCCHHHHHHHHHHC
T ss_pred CEEEEE----eCCCCHHHHHHHHHhC
Confidence 122221 1369999999999887
No 47
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=97.52 E-value=0.00015 Score=63.72 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHc----CC-----CcE
Q 022046 25 LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILN----AE-----PRL 94 (303)
Q Consensus 25 ~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~----G~-----~~i 94 (303)
|+..+++|.+.++++.. ..+.+|||+++. ||+|+ .|.|-.+... ..+.|||..||.+|... |. -.=
T Consensus 26 d~~~M~~Al~lA~~a~~-~~~~pVGAVIV~-~g~IIa~G~N~~~~~~--~~t~HAEi~AI~~a~~~~~~~~~~~~~~l~g 101 (189)
T 3dh1_A 26 TEKWMEEAMHMAKEALE-NTEVPVGCLMVY-NNEVVGKGRNEVNQTK--NATRHAEMVAIDQVLDWCRQSGKSPSEVFEH 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCCCEEEEEE-TTEEEEEEECCHHHHT--CTTCCHHHHHHHHHHHHHHHHCCCHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhh-CCCCCEEEEEEE-CCEEEEEEeCCCCccC--CCcCcHHHHHHHHHHHHHhhcCcccccccCC
Confidence 44455666665555542 136789999885 89877 7999632211 12799999999988542 21 011
Q ss_pred EEEEEEeCCChhhHHHHHHhh
Q 022046 95 QHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 95 ~aiav~~~PCG~CRQ~L~E~~ 115 (303)
-.++|+--||-+|-..|.+.+
T Consensus 102 ~tLYvTlEPC~mCa~Aii~ag 122 (189)
T 3dh1_A 102 TVLYVTVEPCIMCAAALRLMK 122 (189)
T ss_dssp EEEEEEECCBHHHHHHHHHHT
T ss_pred eEEEEeCCChHHHHHHHHHhC
Confidence 345666689999999999975
No 48
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.002 Score=56.54 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceee-EE
Q 022046 183 ERLKYAALEAANKSHAPYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV-AA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~syaPyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~-~i 260 (303)
+..++.|++.++++.. ..+.||||+|+. ||+|. +|.|-.+....++.+||..||-++...... .|......++ ..
T Consensus 27 ~~~M~~Al~lA~~a~~-~~~~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~-~~~~~~~~l~g~t 103 (189)
T 3dh1_A 27 EKWMEEAMHMAKEALE-NTEVPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQ-SGKSPSEVFEHTV 103 (189)
T ss_dssp HHHHHHHHHHHHHHHH-TTSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHH-HCCCHHHHHTTEE
T ss_pred HHHHHHHHHHHHHhhh-CCCCCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhh-cCcccccccCCeE
Confidence 4567778877777642 236799999886 89877 799975555678999999999988642000 0100000112 22
Q ss_pred EEEeCCCCCcCCcHHHHHHHHHHCC
Q 022046 261 ALVEKEDAVVRQEHAARLLLQVISP 285 (303)
Q Consensus 261 ~~v~~~~~~~~PCG~CRq~L~e~~~ 285 (303)
+.++ .-||.+|-..|...+-
T Consensus 104 LYvT-----lEPC~mCa~Aii~agI 123 (189)
T 3dh1_A 104 LYVT-----VEPCIMCAAALRLMKI 123 (189)
T ss_dssp EEEE-----ECCBHHHHHHHHHHTC
T ss_pred EEEe-----CCChHHHHHHHHHhCC
Confidence 2222 4799999999999873
No 49
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=96.60 E-value=0.013 Score=55.91 Aligned_cols=82 Identities=26% Similarity=0.263 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhhcCC-CCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHcCCC-cEEEEEEEeCC
Q 022046 27 LLPTLVKSAQTLARP-PISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILNAEP-RLQHLAVSAAP 103 (303)
Q Consensus 27 ~L~~~A~~a~~~ay~-PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~-~i~aiav~~~P 103 (303)
..+++|.+.++++.. ...+.+|||++.. ||+|+ .|.|-.. .+.|||..||.+|...|.. .=-.++|.--|
T Consensus 16 ~~m~~al~lA~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~Ai~~a~~~~~~~~g~tlYvTlEP 88 (360)
T 2hxv_A 16 TFMKRAIELAKKGLGRVNPNPPVGAVVVK-DGRIIAEGFHPYF------GGPHAERMAIESARKKGEDLRGATLIVTLEP 88 (360)
T ss_dssp HHHHHHHHHHHTTTTTSTTSCCCEEEEEE-TTEEEEEEECCST------TSCCHHHHHHHHHHHTTCCCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEE-CCEEEEEEeCCCC------CCcCHHHHHHHHHHhcCCCcCCcEEEEecCc
Confidence 355666666666543 2347899999885 89875 6888753 2789999999998765542 22345556689
Q ss_pred C------hhhHHHHHHhh
Q 022046 104 C------GHCRQFLQELR 115 (303)
Q Consensus 104 C------G~CRQ~L~E~~ 115 (303)
| .+|-+.|.+.+
T Consensus 89 C~h~g~t~~C~~ai~~ag 106 (360)
T 2hxv_A 89 CDHHGKTPPCTDLIIESG 106 (360)
T ss_dssp CCSCSSSCCHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHhC
Confidence 9 68999999875
No 50
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=96.54 E-value=0.0068 Score=58.71 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=59.0
Q ss_pred HHHHHHHcCCC------hhhhHHHHHHHHHhhcCC-CCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHH
Q 022046 13 AESMAQKSGLT------VLQLLPTLVKSAQTLARP-PISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLIT 84 (303)
Q Consensus 13 ~~~~~~~~~~~------~~~~L~~~A~~a~~~ay~-PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~ 84 (303)
.++|.++.... .|+..+++|.+.++++.. ...+.+|||++.. ||+|. .|.|-.. .+.|||.+||.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~------g~~HAE~~Ai~ 84 (402)
T 2g6v_A 12 STSLYKKAGSETLYIQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVK-DGEIVGEGYHQRA------GEPHAEVHALR 84 (402)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEE-TTEEEEEEECCCT------TSCCHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEE-CCEEEEEEeCCCC------CccHHHHHHHH
Confidence 34555555553 356678888888888753 2347899999886 88864 6888753 27899999999
Q ss_pred HHHHcCCCcEEEEEEEeCCC------hhhHHHHHHhh
Q 022046 85 NLILNAEPRLQHLAVSAAPC------GHCRQFLQELR 115 (303)
Q Consensus 85 ~Av~~G~~~i~aiav~~~PC------G~CRQ~L~E~~ 115 (303)
+|-..- +=-.+++..-|| .+|-+.|.+.+
T Consensus 85 ~a~~~~--~g~tlyvt~ePC~h~G~tp~C~~ai~~ag 119 (402)
T 2g6v_A 85 MAGEKA--KGATAYVTLEPCSHHGRTPPCCDALIAAG 119 (402)
T ss_dssp HHGGGG--GSSCEEESSCCC-------CCHHHHHHTT
T ss_pred HhhHhc--CCeEEEEeCCCcCCCCCchHHHHHHHHhC
Confidence 884321 111345555899 68999999875
No 51
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=96.36 E-value=0.023 Score=54.31 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=60.1
Q ss_pred ChhhhHHHHHHHHHhhcCC-CCCCCceEEEEEeCCCcEE-EeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEE
Q 022046 23 TVLQLLPTLVKSAQTLARP-PISKFHVGAVGLGSSGRIF-LGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVS 100 (303)
Q Consensus 23 ~~~~~L~~~A~~a~~~ay~-PyS~f~VgAavl~~dG~iy-~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~ 100 (303)
+.|+..+++|.+.++++.. ...+.+|||++. +||+|. +|.|-.. .+.|||..||.+|-..- .=-.++|.
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~------~~~HAE~~Ai~~a~~~~--~g~tlyvT 82 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLKY------GEAHAEVHAIHMAGAHA--EGADIYVT 82 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCST------TSCCHHHHHHHHHGGGG--TTCEEEES
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCCC------CCcCHHHHHHHHhhHhc--CCeEEEEe
Confidence 3466677888888888764 234789999888 588865 6888753 27899999999884321 11234555
Q ss_pred eCCC------hhhHHHHHHhh
Q 022046 101 AAPC------GHCRQFLQELR 115 (303)
Q Consensus 101 ~~PC------G~CRQ~L~E~~ 115 (303)
--|| .+|-+.|.+-+
T Consensus 83 lePC~~~G~t~~C~~ai~~ag 103 (373)
T 2b3z_A 83 LEPCSHYGKTPPCAELIINSG 103 (373)
T ss_dssp SCCCCCCSSSCCHHHHHHHHT
T ss_pred CCCccCcCCChHHHHHHHHhC
Confidence 5899 78999999875
No 52
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=95.13 E-value=0.068 Score=50.82 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCC-CCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEE
Q 022046 184 RLKYAALEAANKSHA-PYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAA 261 (303)
Q Consensus 184 ~l~~~A~~a~~~sya-PyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~ 261 (303)
..++.|++.++++.. -..+.+|||+|+. ||+|. +|.|-. ..+.+||..||-++... |. .++...
T Consensus 16 ~~m~~al~lA~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~~-----~~----~~~g~t 81 (360)
T 2hxv_A 16 TFMKRAIELAKKGLGRVNPNPPVGAVVVK-DGRIIAEGFHPY----FGGPHAERMAIESARKK-----GE----DLRGAT 81 (360)
T ss_dssp HHHHHHHHHHHTTTTTSTTSCCCEEEEEE-TTEEEEEEECCS----TTSCCHHHHHHHHHHHT-----TC----CCTTCE
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEE-CCEEEEEEeCCC----CCCcCHHHHHHHHHHhc-----CC----CcCCcE
Confidence 567788888887643 2336789999885 89876 688765 35899999999998655 32 121111
Q ss_pred EEeCCCCCcCCc------HHHHHHHHHHC
Q 022046 262 LVEKEDAVVRQE------HAARLLLQVIS 284 (303)
Q Consensus 262 ~v~~~~~~~~PC------G~CRq~L~e~~ 284 (303)
++- -.-|| .+|-..|.+.+
T Consensus 82 lYv----TlEPC~h~g~t~~C~~ai~~ag 106 (360)
T 2hxv_A 82 LIV----TLEPCDHHGKTPPCTDLIIESG 106 (360)
T ss_dssp EEE----EECCCCSCSSSCCHHHHHHHHT
T ss_pred EEE----ecCcccccCCCHHHHHHHHHhC
Confidence 211 13588 68999999887
No 53
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=93.80 E-value=0.15 Score=48.71 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHA-PYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~sya-PyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+..++.|++.++++.. -..+.+|||+|+ +||+|. +|.|-. ..+.+||..||.++-..+ .|. .+
T Consensus 15 ~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~~~---~g~-------tl 79 (373)
T 2b3z_A 15 EYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLK----YGEAHAEVHAIHMAGAHA---EGA-------DI 79 (373)
T ss_dssp HHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCS----TTSCCHHHHHHHHHGGGG---TTC-------EE
T ss_pred HHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCC----CCCcCHHHHHHHHhhHhc---CCe-------EE
Confidence 4678999999998753 234678999888 589876 688765 358999999999874331 011 12
Q ss_pred EEEeCCCCCcCCc------HHHHHHHHHHC
Q 022046 261 ALVEKEDAVVRQE------HAARLLLQVIS 284 (303)
Q Consensus 261 ~~v~~~~~~~~PC------G~CRq~L~e~~ 284 (303)
+ ++ .-|| .+|-..|.+-+
T Consensus 80 y-vT-----lePC~~~G~t~~C~~ai~~ag 103 (373)
T 2b3z_A 80 Y-VT-----LEPCSHYGKTPPCAELIINSG 103 (373)
T ss_dssp E-ES-----SCCCCCCSSSCCHHHHHHHHT
T ss_pred E-Ee-----CCCccCcCCChHHHHHHHHhC
Confidence 2 21 3688 68999998886
No 54
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=92.80 E-value=0.24 Score=47.83 Aligned_cols=81 Identities=16% Similarity=0.039 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCcEEEEEEeCCCCEE-EeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEE
Q 022046 183 ERLKYAALEAANKSHA-PYSKCPSGVAIMDCEGNIY-KGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAA 260 (303)
Q Consensus 183 ~~l~~~A~~a~~~sya-PyS~~~vgaal~~~dG~iy-~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i 260 (303)
+..++.|++.++++.. ...+.+|||+|+. ||+|. .|.|-. ..+.+||..||-++-.. ++..
T Consensus 31 ~~~m~~A~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~g~~HAE~~Ai~~a~~~------------~~g~ 93 (402)
T 2g6v_A 31 EYYMARALKLAQRGRFTTHPNPNVGCVIVK-DGEIVGEGYHQR----AGEPHAEVHALRMAGEK------------AKGA 93 (402)
T ss_dssp HHHHHHHHHHHHTTTTTCTTSCCCEEEEEE-TTEEEEEEECCC----TTSCCHHHHHHHHHGGG------------GGSS
T ss_pred HHHHHHHHHHHHhhCccCCCCCCEEEEEEE-CCEEEEEEeCCC----CCccHHHHHHHHHhhHh------------cCCe
Confidence 4678899999998753 2346789999986 88875 788765 35899999999887433 1111
Q ss_pred EEEeCCCCCcCCc------HHHHHHHHHHC
Q 022046 261 ALVEKEDAVVRQE------HAARLLLQVIS 284 (303)
Q Consensus 261 ~~v~~~~~~~~PC------G~CRq~L~e~~ 284 (303)
.++. -..|| .+|-..|...+
T Consensus 94 tlyv----t~ePC~h~G~tp~C~~ai~~ag 119 (402)
T 2g6v_A 94 TAYV----TLEPCSHHGRTPPCCDALIAAG 119 (402)
T ss_dssp CEEE----SSCCC-------CCHHHHHHTT
T ss_pred EEEE----eCCCcCCCCCchHHHHHHHHhC
Confidence 1111 13588 58988888876
No 55
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=91.97 E-value=0.77 Score=41.80 Aligned_cols=58 Identities=31% Similarity=0.320 Sum_probs=39.8
Q ss_pred CCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHcCCCcEEEEEEEeCCChhhHHHHHHhh
Q 022046 45 KFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILNAEPRLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 45 ~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~G~~~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
|-+|||++.. ||+|.. .. ++ .+.|||..||... ...=-.+++..-||-+|-..|...+
T Consensus 21 NPpVGAVIVk-DGeIIA-~G-e~------gTaHAEInAIrg~----~L~GaTLYVTLEPC~MCAgAII~AG 78 (278)
T 3g8q_A 21 KRTVTAALLE-GGEIVA-VE-EA------DDEHAERKLVRRH----DVEGKVVFVTARPCLYCARELAEAG 78 (278)
T ss_dssp CSSCEEEEEE-TTEEEE-EE-EC------SSSCHHHHHHHHS----CCTTCEEEESSCCCHHHHHHHHTTT
T ss_pred CCCEEEEEEE-CCEEEE-ec-CC------CCCCHHHHHhCCC----CCCCcEEEEeCCchHHHHHHHHHhC
Confidence 5579999875 888664 22 33 2799999999611 1111245555589999999999875
No 56
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=87.96 E-value=0.74 Score=40.14 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=35.8
Q ss_pred EEEeeecCCCCCCCCCccChhHHHHHHHHH-cCCC-c-EEEEEEEeCCChhhHHHHHHh
Q 022046 59 IFLGGNVEFPGLPLHQSIHAEQFLITNLIL-NAEP-R-LQHLAVSAAPCGHCRQFLQEL 114 (303)
Q Consensus 59 iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~-~G~~-~-i~aiav~~~PCG~CRQ~L~E~ 114 (303)
+-.|.|-+.. .+.|||..||.+|.. .+.. . =-.++|+-.||-+|-+.|.++
T Consensus 51 i~~G~~~~~~-----~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC~~Ca~aIi~a 104 (190)
T 2nyt_A 51 ASRGYLEDEH-----AAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKT 104 (190)
T ss_pred EEEEECCCCC-----CCcCHHHHHHHHHHHhcCccccCCeEEEEEcChHHHHHHHHHHh
Confidence 4578888742 279999999988764 2222 1 123445558999999999998
No 57
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=80.79 E-value=4.4 Score=36.86 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=39.3
Q ss_pred CCCcEEEEEEeCCCCEEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceeeEEEEEeCCCCCcCCcHHHHHHH
Q 022046 201 SKCPSGVAIMDCEGNIYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIVAAALVEKEDAVVRQEHAARLLL 280 (303)
Q Consensus 201 S~~~vgaal~~~dG~iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~~i~~v~~~~~~~~PCG~CRq~L 280 (303)
-+.+|||+|.. ||+|.. .- ++ ++.|||..||- .. . ++...++. -..||-+|-..|
T Consensus 20 PNPpVGAVIVk-DGeIIA-~G-e~----gTaHAEInAIr---g~------~-----L~GaTLYV----TLEPC~MCAgAI 74 (278)
T 3g8q_A 20 PKRTVTAALLE-GGEIVA-VE-EA----DDEHAERKLVR---RH------D-----VEGKVVFV----TARPCLYCAREL 74 (278)
T ss_dssp CCSSCEEEEEE-TTEEEE-EE-EC----SSSCHHHHHHH---HS------C-----CTTCEEEE----SSCCCHHHHHHH
T ss_pred CCCCEEEEEEE-CCEEEE-ec-CC----CCCCHHHHHhC---CC------C-----CCCcEEEE----eCCchHHHHHHH
Confidence 35689999885 888763 22 32 89999999995 11 1 11112221 247999999999
Q ss_pred HHHC
Q 022046 281 QVIS 284 (303)
Q Consensus 281 ~e~~ 284 (303)
...+
T Consensus 75 I~AG 78 (278)
T 3g8q_A 75 AEAG 78 (278)
T ss_dssp HTTT
T ss_pred HHhC
Confidence 8876
No 58
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=73.55 E-value=22 Score=30.68 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=34.9
Q ss_pred EEEeEeeccCCCCCCCCHHHHHHHHHHHhCCCCCCCCccceee-EEEEEeCCCCCcCCcHHHHHHHHHH
Q 022046 216 IYKGSYMESAAYNPSLGPVQAALVAYLAAGGSGGGGGGYERIV-AAALVEKEDAVVRQEHAARLLLQVI 283 (303)
Q Consensus 216 iy~G~nvEnaa~~~slcAEr~Al~~a~~~~~~~~G~~~~~~i~-~i~~v~~~~~~~~PCG~CRq~L~e~ 283 (303)
+-.|.+-+. .++.+||..||-++...+ +. ... .+.+.- -..||-+|-+.|.++
T Consensus 51 i~~G~~~~~---~~~~HAE~~Ai~~a~~~l-----~~---~~~~g~TlYv----TlePC~~Ca~aIi~a 104 (190)
T 2nyt_A 51 ASRGYLEDE---HAAAHAEEAFFNTILPAF-----DP---ALRYNVTWYV----SSSPCAACADRIIKT 104 (190)
T ss_pred EEEEECCCC---CCCcCHHHHHHHHHHHhc-----Cc---cccCCeEEEE----EcChHHHHHHHHHHh
Confidence 446777763 268999999999886531 11 122 222221 148999999999999
No 59
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=63.44 E-value=14 Score=30.55 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=47.7
Q ss_pred cccHHHHHHHHHHcC--------CChhhhHHHHHHHHHhhcCCC------CCCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQKSG--------LTVLQLLPTLVKSAQTLARPP------ISKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~L~~~A~~a~~~ay~P------yS~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++.+++++++.+.. +++.+.|.+...+++++.|+= ..-..||+-|.+.+|++...+++-.+.
T Consensus 70 ~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~iR~~Gya~~~~e~~~g~~~vAaPv~~~~g~~~~alsv~~p~ 146 (181)
T 1ysp_A 70 WRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPT 146 (181)
T ss_dssp TSCHHHHHHHHTTCCCCCCSTTCCCSHHHHHHHHHHHHHHTCEEEESSSSTTBEEEEEEEECTTSCEEEEEEECCBS
T ss_pred CCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHHHHHHHHhCCeEEccccccCCEEEEEEEECCCCCEEEEEEEEeeh
Confidence 467889999987754 234567888888999999982 122367888899999999999997654
No 60
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=53.96 E-value=29 Score=29.10 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++.+++++++++.++ ++.+.|.+...+++++.|+ ++ -..||+-|.+.+|++..++++-.+.
T Consensus 90 ~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~iR~~Gya-~~~~e~~~gv~~iAaPI~~~~g~~~aalsvs~p~ 166 (198)
T 1tf1_A 90 PLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYT-VDKEEHVVGLNCIASAIYDDVGSVVAAISISGPS 166 (198)
T ss_dssp TSCHHHHHHHHHHHCCCCCSTTCCCSHHHHHHHHHHHHHHTCE-EEESSSSTTEEEEEEEEECTTSCEEEEEEEEEET
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhCCE-EeccccccCceEEEEEEECCCCCEEEEEEEeeeh
Confidence 4678899999987432 3456788888899999997 22 2357788898999999999986544
No 61
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=51.84 E-value=28 Score=30.39 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHcC--------CChhhhHHHHHHHHHhhcCCC------CCCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQKSG--------LTVLQLLPTLVKSAQTLARPP------ISKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~L~~~A~~a~~~ay~P------yS~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++.++++++.++.+ +++.+.|.+...+++++.|+= ..-..||+-|.+.+|++..+++|-.+.
T Consensus 145 ~~~~~~~~~~l~~~~l~~~t~~t~~~~~~l~~~l~~iR~~Gya~~~~e~~~g~~~iAaPI~~~~g~~~aalsv~~p~ 221 (249)
T 1mkm_A 145 FVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVA 221 (249)
T ss_dssp HSCHHHHHHHHHHCCCCCSSTTCCCCHHHHHHHHHHHHHHSSEEEESSSSTTEEEEEEEEECTTSCEEEEEEEEEEG
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhCCcccccccccCCEEEEEEEECCCCCEEEEEEEEEEh
Confidence 467889999998754 345567888888999999982 112357778888999999999986543
No 62
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=48.48 E-value=34 Score=30.01 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=48.1
Q ss_pred ccccHHHHHHHHHHcC--------CChhhhHHHHHHHHHhhcCCC------CCCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQKSG--------LTVLQLLPTLVKSAQTLARPP------ISKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~--------~~~~~~L~~~A~~a~~~ay~P------yS~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
..++.++++++.++.. +++.+.|.+...+++++.|+= ..-..||+-|.+.+|++..+++|-.+.
T Consensus 149 A~~~~~~~~~~l~~~~l~~~t~~t~~~~~~l~~~l~~iR~~Gya~~~~e~~~g~~~iAaPI~~~~g~~~aalsvs~p~ 226 (257)
T 2g7u_A 149 AWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSS 226 (257)
T ss_dssp TTSCHHHHHHHHHHCCCCCCSTTCCCSHHHHHHHHHHHHHHSSEEEESSSSTTEEEEEEEEECTTSCEEEEEEEEEET
T ss_pred hCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhCCEEeccccccCCEEEEEEEECCCCCEEEEEEEEeeh
Confidence 3567889999998653 345567888888999999982 112357888899999999999997544
No 63
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=48.05 E-value=60 Score=31.80 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCh-hhhHHHHHHHHHhhcCCCCCCCceEEEEEeCCCcEEEeeecCCCCCCCCCccChhHHHHHHHHHc
Q 022046 11 AEAESMAQKSGLTV-LQLLPTLVKSAQTLARPPISKFHVGAVGLGSSGRIFLGGNVEFPGLPLHQSIHAEQFLITNLILN 89 (303)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~L~~~A~~a~~~ay~PyS~f~VgAavl~~dG~iy~G~NvE~~s~~~~~~vCAEr~Ai~~Av~~ 89 (303)
+.++-++++.|++. |+..+..|++..+..-.| ++|+...||+|++|-+=+. +.|--.+|.+|+..
T Consensus 330 ~k~~llM~~~~i~~~dR~vv~~A~~~ae~t~~p------a~AieL~DG~IvTGKtS~L--------lgasaA~lLNAlK~ 395 (507)
T 3bh1_A 330 DRAAVVMAKAGIKASQRVVVEPARQVEERTSLP------GCAIELVDGSIITGATSDL--------LGCSSSMLLNALKH 395 (507)
T ss_dssp HHHHHHHHHHTCCGGGSTTHHHHHHHHHHHSSC------EEEEECTTSCEEEEECCSS--------BCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHhhHHHHHHHHHHHHhCCC------eEEEEeCCCCEEeCCCccc--------cchHHHHHHHHHHH
Confidence 34567889999974 556777787777776665 6889999999999998764 33445777888654
No 64
>3bjn_A Transcriptional regulator, putative; putative transcriptional regulator ICLR, ST genomics, PSI-2; HET: MSE; 1.65A {Vibrio cholerae o1 biovar eltor str}
Probab=48.03 E-value=22 Score=28.79 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHc-CCChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCC
Q 022046 7 VIEAAEAESMAQKS-GLTVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEF 67 (303)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~ 67 (303)
.++.+++++++++. ..++.+.|.+...+.+++.|+= + -..||+-|. .+|++...+++-.
T Consensus 76 ~~~~~~~~~~l~~~~t~~~~~~l~~~l~~iR~~Gya~-~~~e~~~g~~~iAaPI~-~~g~~~aalsv~~ 142 (165)
T 3bjn_A 76 YMPAARCEKILRYFGEDPTLDKWQSEFEKIRRHGYAV-STSEIDPGVSGISAPVM-KGSKLIGAISVMA 142 (165)
T ss_dssp HSCHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHTSEE-EESSSSTTEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred CCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCcEe-eCccccCCceEEEEEEc-cCCEEEEEEEEEE
Confidence 46788899998875 3345567888888999999882 2 125777788 9999999988843
No 65
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=46.79 E-value=14 Score=30.39 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=45.7
Q ss_pred ccccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
..++.++.++++.+..+ ++.+.|.+ ..+++++.|+= + -..||+-|.+.+|++...+++-.+.
T Consensus 69 A~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~-l~~iR~~Gya~-~~~e~~~g~~~iAaPI~~~~g~~~aalsv~~p~ 145 (176)
T 3obf_A 69 ASENEDRVRQLLRSGSITLTGVDEDAVEAYLLR-LKESMERGWAV-NFGETSIEEVGVASPVYDHRGNMVASVLIPAPK 145 (176)
T ss_dssp HTBCHHHHHHHHHHTSSBCTTCCHHHHHHHHHH-HHHHHHHTSEE-EESSSSTTEEEEEEEEECTTSCEEEEEEEEEEG
T ss_pred hCCCHHHHHHHHhcCCCccCCCCCcCCHHHHHH-HHHHHHcCCEe-eccccccCcEEEEEEEECCCCCEEEEEEeEeeh
Confidence 35678899999988533 23456777 88899999882 2 1267888899999999999986543
No 66
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=45.43 E-value=37 Score=31.38 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=44.5
Q ss_pred CCcccccHHHHHHHHHHcCCChhhhHHHHHHHHH-----hhcCCCC---CC-CceEEEEEeCCCcEEEeeecC
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVLQLLPTLVKSAQ-----TLARPPI---SK-FHVGAVGLGSSGRIFLGGNVE 66 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~A~~a~-----~~ay~Py---S~-f~VgAavl~~dG~iy~G~NvE 66 (303)
+||-+|.-+.+++|.++.|+..+..+-+.+++.. +..|.|. .+ =.|||+.++.+|++-.|+.--
T Consensus 99 t~h~lLvG~gA~~fA~~~G~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~lAaaTSTg 171 (295)
T 1p4k_A 99 TPHVMLVGDGALEFALSQGFKKENLLTAESEKEWKEWLKTSQYKPIVNIENHNTIGMIALDAQGNLSGACTTS 171 (295)
T ss_dssp SSCSEEEHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTTCCCCCCBSSSBBCCEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEECHHHHHHHHHcCCCcccCCCHHHHHHHHHHHhhcccCcccccCCCCCEEEEEEcCCCCEEEEEccC
Confidence 5788899999999999999985443333332222 1234442 22 389999999999999988753
No 67
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=41.58 E-value=52 Score=29.00 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHcC--------CChhhhHHHHHHHHHhhcCCC------CCCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQKSG--------LTVLQLLPTLVKSAQTLARPP------ISKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~L~~~A~~a~~~ay~P------yS~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++.+++++++.+.+ +++.+.|.+...+++++.|+= ..-..||+-|.+.+|++..+++|-.+.
T Consensus 157 ~~~~~~~~~~l~~~~l~~~t~~ti~~~~~l~~~l~~iR~~Gya~~~~e~~~g~~~iAaPI~~~~g~~~aalsvs~p~ 233 (265)
T 2ia2_A 157 GLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRGASGLTVAAVNISTPA 233 (265)
T ss_dssp TSCHHHHHHHHHHCCCCCCSTTSCCCHHHHHHHHHHHHHHSCEEEESSSSTTEEEEEEEEECTTSCEEEEEEEEEEG
T ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhCcEEEccccccCCEEEEEEEECCCCCEEEEEEEEEEh
Confidence 467889999998754 345567888888999999972 112357888899999999999986543
No 68
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=39.45 E-value=41 Score=27.60 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=43.2
Q ss_pred cccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++.+++++++++..+ ++.+.|.+...+++++.|+ ++ -..||+-|.+.+|++...+++-.+.
T Consensus 74 ~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~iR~~Gya-~~~~e~~~gv~~iAaPv~~~~g~~~aalsv~~p~ 150 (182)
T 2o99_A 74 QLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYS-FDDEEHALGLRCLAACIFDEHREPFAAISISGPI 150 (182)
T ss_dssp TSCHHHHHC----CCCCCSSTTSCCSHHHHHHHHHHHHHHTSE-EEESSSSTTEEEEEEEEECTTSCEEEEEEEEEET
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhCCE-EeccccccCCEEEEEEEECCCCCEEEEEEEEeeh
Confidence 4678888888876543 3456788888889999987 22 2257778888999999999987554
No 69
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=38.79 E-value=55 Score=28.76 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHcCC--------ChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQKSGL--------TVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--------~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
..++.+++++++++ ++ ++.+.|.+...+++++.|+ ++ -..||+-|.+.+|++...++|-.+.
T Consensus 144 A~~~~~~~~~~l~~-~l~~~t~~t~~~~~~l~~~l~~iR~~Gya-~~~~e~~~g~~~iAaPI~~~~g~~~aalsvs~p~ 220 (260)
T 3r4k_A 144 AYSEPSFVDAVLAA-PLTARTPQTQTDPAAIRAEIAEVRRTGLA-QSIGGFEAEVHSHAVPIFGPDRAVLGALAVAAPT 220 (260)
T ss_dssp TTSCHHHHHHHHHS-CCCCSSTTSCCCHHHHHHHHHHHHHHSCE-EEESSSSTTEEEEEEEEECTTSCEEEEEEEEEEG
T ss_pred HCCCHHHHHHHHcc-CCCCCCCCCCCCHHHHHHHHHHHHHCCeE-EeCCccccCceEEEEEEECCCCCEEEEEEEEEeh
Confidence 35678899999887 33 3456788888899999998 33 2367888899999999999996544
No 70
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase, autoprot precursor, hydrolase; 1.95A {Escherichia coli} PDB: 2zak_A
Probab=38.28 E-value=67 Score=29.89 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=40.8
Q ss_pred CCcccccHHHHHHHHHHcCCChhh--hH-----HHHHHHHHhhc----------CCCCCC-CceEEEEEeCCCcEEEeee
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVLQ--LL-----PTLVKSAQTLA----------RPPISK-FHVGAVGLGSSGRIFLGGN 64 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~L-----~~~A~~a~~~a----------y~PyS~-f~VgAavl~~dG~iy~G~N 64 (303)
+|+-+|.-+.+++|.++.|+...+ .| .+.-++..++. |.|+.+ =.|||+.++.+|++-.|++
T Consensus 116 t~h~lLvG~GA~~fA~~~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~lAaaTS 195 (320)
T 3c17_A 116 SPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHSGAPLDEKQKMGAVGAVALDLDGNLAAATS 195 (320)
T ss_dssp SSCSEEEHHHHHHHHHHTTCCCCCGGGGCCHHHHHHHHHHHCCCC--------SEECTTTCCCEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEcHHHHHHHHHcCCCccccccccCHHHHHHHHHHHhccccccCcccccccCcCCCCCEEEEEEeCCCCEEEEEc
Confidence 577888999999999999986421 11 11111222211 122232 3899999999999998886
Q ss_pred c
Q 022046 65 V 65 (303)
Q Consensus 65 v 65 (303)
-
T Consensus 196 T 196 (320)
T 3c17_A 196 T 196 (320)
T ss_dssp E
T ss_pred C
Confidence 4
No 71
>1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, protein structure initiative, midwest center for structural genomics; 1.75A {Escherichia coli}
Probab=36.84 E-value=29 Score=28.85 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=43.8
Q ss_pred cccHHHHHHHH--HHc--------CCChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCC
Q 022046 7 VIEAAEAESMA--QKS--------GLTVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEF 67 (303)
Q Consensus 7 ~~~~~~~~~~~--~~~--------~~~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~ 67 (303)
.++.+++++++ .+. .+++.+.|.+...+++++.|+ ++ -..||+-|.+.+|++..++++-.
T Consensus 76 ~~~~~~~~~~l~~~~~~l~~~t~~t~~~~~~l~~~l~~iR~~Gya-~~~~e~~~gv~~iAaPI~~~~g~~~aalsv~~ 152 (193)
T 1ysq_A 76 FGHPDYVKSYWESHQHEIQPLTRNTITELPAMFDELAHIRESGAA-MDREENELGVSCIAVPVFDIHGRVPYAVSISL 152 (193)
T ss_dssp TSCHHHHHHHHHHTTTTCCCSSTTCCCSHHHHHHHHHHHHHHTCE-EEESSSSTTEEEEEEEECCTTSCCSEEEEEEE
T ss_pred CCCHHHHHHHHhcccCCCCCCCCCCCCCHHHHHHHHHHHHHhCcE-EeccccccCCEEEEEEEECCCCCEEEEEEEEE
Confidence 46788899988 432 233556788888899999998 22 23577778888999888888854
No 72
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=35.73 E-value=27 Score=31.22 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=46.6
Q ss_pred ccccHHHHHHHHHH-------cCCChhhhHHHHHHHHHhhcCCCCC-------CCceEEEEEeCCCcEEEeeecCCCC
Q 022046 6 FVIEAAEAESMAQK-------SGLTVLQLLPTLVKSAQTLARPPIS-------KFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 6 ~~~~~~~~~~~~~~-------~~~~~~~~L~~~A~~a~~~ay~PyS-------~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
..++.+++++++++ ..+++.+.|.+...+++++.|+ ++ -..||+-|.+.+|++...++|-.+.
T Consensus 166 A~~~~~~~~~~l~~~~~~~t~~ti~~~~~l~~~l~~iR~~Gya-~~~~E~~~gv~~vAaPV~~~~g~~~aalsvs~p~ 242 (275)
T 3mq0_A 166 SDLGPGELRMLFSQFPQPLTSRSVAGLSQLEEELALTRARGYS-IDDGQIREGMLCIGAAIRDYSGAASAGIAISLIR 242 (275)
T ss_dssp TTSCHHHHHHHCSSCCCCSSTTSCCSHHHHHHHHHHHHHHTSE-EEESSSSTTEEEEEEEEECTTSCEEEEEEEEEET
T ss_pred hCCCHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHcCeE-EeCcccccCcEEEEEEEECCCCCEEEEEEEEEEh
Confidence 34677888888765 1234557788888899999998 22 2367888899999999999987654
No 73
>3d3o_A Putative transcriptional regulator, ICIR family; alpha-beta structure, effector domain, structural genomics, protein structure initiative; HET: MSE; 2.46A {Acinetobacter SP}
Probab=35.12 E-value=57 Score=26.66 Aligned_cols=62 Identities=0% Similarity=-0.138 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHc--------CCChhhhHHHHHHHHHhhcCCCC------CCCceEEEEEeCCCcEEEeeecCCC
Q 022046 7 VIEAAEAESMAQKS--------GLTVLQLLPTLVKSAQTLARPPI------SKFHVGAVGLGSSGRIFLGGNVEFP 68 (303)
Q Consensus 7 ~~~~~~~~~~~~~~--------~~~~~~~L~~~A~~a~~~ay~Py------S~f~VgAavl~~dG~iy~G~NvE~~ 68 (303)
.++.+++++++.+. .+++.+.|.+...+++++.|+=- .-..||+-|.+.+|++..++++-.+
T Consensus 71 ~~~~~~~~~~l~~~~~~~~t~~t~~~~~~l~~~l~~iR~~Gya~~~~e~~~gv~~iAaPv~~~~g~~~~alsv~~p 146 (178)
T 3d3o_A 71 TMNDKAIDNTVRRANTITQKDGIRFEVDDMMARIRQVREQGYASAEHIPFVGGGTICVLLPMTIQGQPVTMGLGGA 146 (178)
T ss_dssp TSCHHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHSEEEEESSSSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhhccccCCCCCcCCHHHHHHHHHHHHHcCCEEeCCcccCCceEEEEEEEcCCCCEEEEEEEEEe
Confidence 45677787776542 23455678888889999988721 1135788889899999999998543
No 74
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=34.00 E-value=61 Score=30.06 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=40.5
Q ss_pred CCcccccHHHHHHHHHHcCCChh--hhHH-HHHHHHHh-----hcC---CCCCCC-ceEEEEEeCCCcEEEeeecC
Q 022046 3 RPRFVIEAAEAESMAQKSGLTVL--QLLP-TLVKSAQT-----LAR---PPISKF-HVGAVGLGSSGRIFLGGNVE 66 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~L~-~~A~~a~~-----~ay---~PyS~f-~VgAavl~~dG~iy~G~NvE 66 (303)
+|+-+|.-+.+++|.++.|+... +.|+ +..++..+ ..+ .++.++ .||++.++.+|++-.|+.--
T Consensus 114 t~h~~LvG~gA~~fA~~~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~dTVG~ValD~~G~iaaaTSTg 189 (310)
T 4gdv_A 114 TPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEKEKHEKGAQKTDCQKNLGTVGAVALDCKGNVAYATSTG 189 (310)
T ss_dssp SSCSEEEHHHHHHHHHHTTCCCCCGGGTCCHHHHHHHHHHTC-----------CCCCEEEEEECTTSCEEEEEEEC
T ss_pred CCCccccCcHHHHHHHHhCCCccCCcccccHHHHHHHHHHHhhhcccccccccccCceeeEEEeCCCCEEEEECCC
Confidence 57888999999999999998641 2122 22222211 111 122233 89999999999999888753
No 75
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=30.94 E-value=94 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEeCCChhhHHHHHHhh
Q 022046 90 AEPRLQHLAVSAAPCGHCRQFLQELR 115 (303)
Q Consensus 90 G~~~i~aiav~~~PCG~CRQ~L~E~~ 115 (303)
|..++.-+.+..+=|+.||++-.++.
T Consensus 12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~ 37 (147)
T 3gv1_A 12 GNGKLKVAVFSDPDCPFCKRLEHEFE 37 (147)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCChhHHHHHHHHh
Confidence 44554444444488999999999885
No 76
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=27.29 E-value=84 Score=27.48 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=44.3
Q ss_pred cccHHHHHHHHHH--cCCChhhhHHHHHHHHHhhcCCC------CCCCceEEEEEeCCCcEEEeeecCCCC
Q 022046 7 VIEAAEAESMAQK--SGLTVLQLLPTLVKSAQTLARPP------ISKFHVGAVGLGSSGRIFLGGNVEFPG 69 (303)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~~~L~~~A~~a~~~ay~P------yS~f~VgAavl~~dG~iy~G~NvE~~s 69 (303)
.++ ++++++.++ ..+++.+.|.+...+++++.|+= ..-..||+-|.+.+|++..+++|-.+.
T Consensus 160 ~~~-~~~~~~l~~t~~t~~~~~~l~~~l~~iR~~Gya~~~~e~~~g~~~vAaPI~~~~g~~~aalsvs~p~ 229 (260)
T 2o0y_A 160 AAP-ELIDDVAADSPHGPEFADQLREKVEDGRERGYQLVHGERELGSSGLSFPLVDSHGTVVAALTLGGPT 229 (260)
T ss_dssp GCG-GGHHHHHHHSTTCGGGHHHHHHHHHHHHHHSSEEEESSSSTTEEEEEEEEECTTCCEEEEEEEEEEG
T ss_pred CCH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCeEEecccccCCceEEEEEEECCCCCEEEEEEEEeeh
Confidence 456 778888876 22334567888888999999972 112357788899999999988886543
No 77
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=26.58 E-value=1.1e+02 Score=26.83 Aligned_cols=51 Identities=18% Similarity=0.453 Sum_probs=33.3
Q ss_pred ccChhHHHHHHHHH---cCCCcEEEEEEEe-CCChhhHHHHHHhhC-CCccEEEEe
Q 022046 75 SIHAEQFLITNLIL---NAEPRLQHLAVSA-APCGHCRQFLQELRN-TSDINICIT 125 (303)
Q Consensus 75 ~vCAEr~Ai~~Av~---~G~~~i~aiav~~-~PCG~CRQ~L~E~~~-~~~~~V~~~ 125 (303)
+.|||..=+..--. +....-+-..-++ +||-.|-|-|.+|-. .+++.+.+.
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If 133 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIK 133 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEE
Confidence 57999998865433 2233444333344 999999999999963 355555553
No 78
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A
Probab=22.57 E-value=1.3e+02 Score=29.07 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCcccccHHHHHHHHHHcCCCh--hhhHH-HHHHHHHhh-----cC--------C-------------CCC-CCceEEEE
Q 022046 3 RPRFVIEAAEAESMAQKSGLTV--LQLLP-TLVKSAQTL-----AR--------P-------------PIS-KFHVGAVG 52 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~L~-~~A~~a~~~-----ay--------~-------------PyS-~f~VgAav 52 (303)
+|+-+|.-+.+++|.++.|+.. .+.|+ +.+++..++ .+ . ++. +=.|||+.
T Consensus 160 tpH~lLvGeGA~~FA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVA 239 (420)
T 2a8j_A 160 IPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDTVGAVV 239 (420)
T ss_dssp CCCSEEEHHHHHHHHHHTTCCBCC--------------------------------------------------CEEEEE
T ss_pred CCCeEEecHHHHHHHHHcCCCcCChhhcCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccCCCCEEEEE
Confidence 4788899999999999999962 22222 222111110 00 0 112 23799999
Q ss_pred EeCCCcEEEeeecC
Q 022046 53 LGSSGRIFLGGNVE 66 (303)
Q Consensus 53 l~~dG~iy~G~NvE 66 (303)
++.+|++-.|+.--
T Consensus 240 lD~~G~lAAaTSTG 253 (420)
T 2a8j_A 240 VDHEGNVAAAVSSG 253 (420)
T ss_dssp EETTCCEEEEEEEC
T ss_pred EeCCCCEEEEEcCC
Confidence 99999998888753
No 79
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=20.70 E-value=61 Score=23.72 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=12.6
Q ss_pred EEeCCChhhHHHHHHhh
Q 022046 99 VSAAPCGHCRQFLQELR 115 (303)
Q Consensus 99 v~~~PCG~CRQ~L~E~~ 115 (303)
+.++=|+.|+++...|.
T Consensus 25 f~a~~C~~C~~~~~~l~ 41 (116)
T 2e7p_A 25 FSKTYCGYCNRVKQLLT 41 (116)
T ss_dssp EECTTCHHHHHHHHHHH
T ss_pred EECCCChhHHHHHHHHH
Confidence 34466999999887764
Done!