BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022048
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 330 bits (847), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 208/307 (67%), Positives = 240/307 (78%), Gaps = 11/307 (3%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60
MGAPKQKWTQEEE+ALK+GVIKHG GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM+
Sbjct: 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60
Query: 61 NGWGSRDKSRLAVKRIPHIAKSEENSLALSSTIVQSDEEEIVDAKPLAVSGATPQIAAAP 120
NGWGSR+KSRLAVKR + K EENSLAL++++ QSDEE + L VS P P
Sbjct: 61 NGWGSREKSRLAVKRTFSLPKQEENSLALTNSL-QSDEENVDATSGLQVSSNPP-----P 114
Query: 121 KRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKL 180
+R VRLD+LIMEAI TLKEPGG NKTTI AYIE++Y APPDFKRLLS KLKYL GKL
Sbjct: 115 RRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKL 174
Query: 181 VKIKRKYRIAPTLPFQDRRRNSMLLLEGRQRISH----KVNNDDINVLTKSQIDLELAKL 236
VK+KRKYRI + P RR + + G+QR S K + D++N T+SQID E+A++
Sbjct: 175 VKVKRKYRIPNSTPLSSHRRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARM 234
Query: 237 RSMTPQEAAAAAARAVAEAEAAVAEAEEAAREADVAEADAEVAQAFAAAAMKTLKGRNNS 296
+SM EAAA AA+AVAEAEAA+AEAEEAA+EA+ AEA+AE AQAFA A KTLKGRN
Sbjct: 235 KSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNIC 294
Query: 297 QKMMIRA 303
KMMIRA
Sbjct: 295 -KMMIRA 300
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 159/295 (53%), Positives = 204/295 (69%), Gaps = 4/295 (1%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60
MGAPKQKWT EEEAALKAGV+KHG GKWRTIL D EFS +L RSNVDLKDKWRN+SV +
Sbjct: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 60
Query: 61 NGWGSRDKSRLAVKRIPHIAKSEENSLALSSTIVQSDEEEIVDAKPLAVSGATPQIAAAP 120
WGSR K++LA+KR P K ++N+ AL+ + +D+E P G +P+ A+
Sbjct: 61 -LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKPTSPGGSGGGSPRTCAS- 118
Query: 121 KRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKL 180
KRSI LD +I EAIT L+E GS++T+I YIEE + PP+ KR ++ +LK+L+ G L
Sbjct: 119 KRSITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTL 178
Query: 181 VKIKRKYRIAPT-LPFQDRRRNSMLLLEG-RQRISHKVNNDDINVLTKSQIDLELAKLRS 238
VKIK KYR + +P R++ L LEG ++ K + N LTK ++D EL ++
Sbjct: 179 VKIKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKG 238
Query: 239 MTPQEAAAAAARAVAEAEAAVAEAEEAAREADVAEADAEVAQAFAAAAMKTLKGR 293
MT QEAA AAARAVAEAE A+ EAE+AA+EA+ AEA+AE AQ FA AAMK LK R
Sbjct: 239 MTAQEAAEAAARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALKFR 293
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/302 (51%), Positives = 201/302 (66%), Gaps = 14/302 (4%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60
MGAPK KWT EEE ALKAGV+KHG GKWRTIL DP +S +L RSNVDLKDKWRN+SV +
Sbjct: 1 MGAPKLKWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNISVTA 60
Query: 61 NGWGSRDKSRLAVKRIPHIAKSEENSLALSSTIVQSDEEEI----VDAKPLAVSGATPQI 116
WGSR K++LA+KR P ++ S ++ A + TIV ++ +DA + P
Sbjct: 61 L-WGSRKKAKLALKRTP-LSGSRQDDNATAITIVSLANGDVGGQQIDAP------SPPAG 112
Query: 117 AAAPKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAG 176
+ P R +D +I+EAIT+LK P G + +I YIEE + PD KRL++++LKYL
Sbjct: 113 SCEPPRPSTSVDKIILEAITSLKRPFGPDGKSILMYIEENFKMQPDMKRLVTSRLKYLTN 172
Query: 177 TGKLVKIKRKYRIAPTLPFQ-DRRRNSMLLLEGRQRISHKVNNDDINVLTKSQIDLELAK 235
G LVK K KYRI+ + + +R+ LLLEG + + K + + LTKSQ+ E+
Sbjct: 173 VGTLVKKKHKYRISQNYMAEGEGQRSPQLLLEGNKENTPKPEENGVKNLTKSQVGGEVM- 231
Query: 236 LRSMTPQEAAAAAARAVAEAEAAVAEAEEAAREADVAEADAEVAQAFAAAAMKTLKGRNN 295
+ MT +EAAAAAARAVAEAE A+AEAEEAAREAD AEA+AE A FA AAMK +K R +
Sbjct: 232 IMGMTEKEAAAAAARAVAEAEFAMAEAEEAAREADKAEAEAEAAHIFAKAAMKAVKYRMH 291
Query: 296 SQ 297
SQ
Sbjct: 292 SQ 293
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 8/185 (4%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60
MG K KWT EEE AL AG+ KHG GKW+ IL+DPEF+ L RSN+DLKDKWRN+SV
Sbjct: 1 MGNQKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPP 60
Query: 61 NGWGSRDKSRLAVKRIPHIAKSEENSLALSSTIVQSDEEEIVDAKPLAVSGATPQ--IAA 118
+K+R P K E ++ A + + I P P I
Sbjct: 61 GTQSLTNKAR------PAKVKEEGDTPAADANDAVTIPRPIPTIPPPPGRRTLPSELIPD 114
Query: 119 APKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTG 178
++ R D +I EA++ L + GS+ ++I +IE ++ PP+F+R+LS +L+ LA
Sbjct: 115 ENTKNAPRYDGVIFEALSALADGNGSDVSSIYHFIEPRHEVPPNFRRILSTRLRRLAAQS 174
Query: 179 KLVKI 183
KL K+
Sbjct: 175 KLEKV 179
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 145/278 (52%), Gaps = 26/278 (9%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60
MG K KWT EEE AL AGV KHG GKW+ IL+DPE + L RSN+DLKDKWRN+SV
Sbjct: 1 MGNQKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLSVAP 60
Query: 61 NGWGSRDKSRLAVKRIPHIAKSEENSLALSSTIVQSDEEEIVDAKPLAV---SGATP--- 114
GS+DK R P I + + A ++ + + + P+A SG++
Sbjct: 61 GIQGSKDKI-----RTPKIKAAAFHLAAAAAAAIVTPTHS-GHSSPVATLPRSGSSDLSI 114
Query: 115 ----QIAAAPKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAK 170
I A PK + R D +I EA++ L + GS+ + I +IE++ PP+F+R+LS++
Sbjct: 115 DDSFNIVADPKNA-PRYDGMIFEALSNLTDANGSDVSAIFNFIEQRQEVPPNFRRMLSSR 173
Query: 171 LKYLAGTGKLVKIKRKYRIAPTLPFQDRRRNSMLLLEGRQRISHKVNNDDINVLTKSQID 230
L+ LA GKL K+ + T F NS++ QR H + N ++ Q +
Sbjct: 174 LRRLAAQGKLEKVS---HLKSTQNFYKMNDNSLV-----QRTPHVARPKESNTKSRQQTN 225
Query: 231 LELAKLRSMTPQEAAAAAARAVAEAEAAVAEAEEAARE 268
+ + S EA+ AA + E E + ++ AA E
Sbjct: 226 SQGPSI-SQQIVEASITAAYKLVEVENKLDVSKGAAEE 262
>sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2
Length = 246
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 130 LIMEAITTLKEPGGSNKTTIAAYIEEKYWA--PPDFKRLLSAKLKYLAGTGKLVKIKRKY 187
++ EAIT+LKE GS+ IA ++E+K+ A PP+F++LL+ +LK L GKL K+K Y
Sbjct: 56 MVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSY 115
Query: 188 RIA 190
+++
Sbjct: 116 KLS 118
>sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
Length = 273
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 128 DNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA-PPDFKRLLSAKLKYLAGTGKLVKIKRK 186
+ +I +AI TLKE GS++ I +IEEK+ + PP F++LL LK L + KLVK+K
Sbjct: 66 EEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKAS 125
Query: 187 YRI 189
++I
Sbjct: 126 FKI 128
>sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2
Length = 238
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 130 LIMEAITTLKEPGGSNKTTIAAYIEEKYWA--PPDFKRLLSAKLKYLAGTGKLVKIKRKY 187
++ EAI LKE GS+ I +IE+K+ A P +F+++L ++K L GKL K+K Y
Sbjct: 61 MVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSY 120
Query: 188 RIA 190
++A
Sbjct: 121 KLA 123
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
G+ KQKWT +E +K GV K+G G+W+TI + F R++V +KD++R M
Sbjct: 662 GSKKQKWTVQESEWIKDGVRKYGEGRWKTISEKYPFQN----RTSVQIKDRYRTM 712
>sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1
Length = 202
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 129 NLIMEAITTLKEPGGSNKTTIAAYIEEKYW--APPDFKRLLSAKLKYLAGTGKLVKIKRK 186
+I EA+ L E GGS+ +A Y+E+K+ P +F+++L +LK A GKL+KIK
Sbjct: 54 QMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKAS 113
Query: 187 YRIA 190
Y+++
Sbjct: 114 YKLS 117
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
+Q W EE+ LK GV K+G G W IL +F+ R++V LKD+WR M
Sbjct: 367 RQTWLWEEDRILKCGVKKYGEGNWAKILSHYKFNN----RTSVMLKDRWRTM 414
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
KQKWT EE +KAGV K+G G W I K+ F R+ V +KD+WR M
Sbjct: 447 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN----RTAVMIKDRWRTM 494
>sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1
Length = 274
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 116 IAAAPKRSIVR----LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA-PPDFKRLLSAK 170
+AAAPK+ V + +I +AI TLKE GS++ I +IEEK PP F++LL
Sbjct: 50 VAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLN 109
Query: 171 LKYLAGTGKLVKIKRKYRI 189
LK L +GKLVK+K +++
Sbjct: 110 LKRLVASGKLVKVKASFKL 128
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
+Q W EE+ L++GV K+G G W IL +F+ R++V LKD+WR M
Sbjct: 380 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN----RTSVMLKDRWRTM 427
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
+Q W EE+ L++GV K+G G W IL +F+ R++V LKD+WR M
Sbjct: 380 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN----RTSVMLKDRWRTM 427
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
KQKWT EE +K GV K+G G W I K F R+ V +KD+WR M
Sbjct: 488 KQKWTIEESEWVKDGVRKYGEGNWAAISKSYPFVN----RTAVMIKDRWRTM 535
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
P+ KWT++E L G HG G W+ IL D F RS DLKD++R +
Sbjct: 54 PRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFH--FTNRSPNDLKDRFRTI 104
>sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3
Length = 261
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 130 LIMEAITTLKEPGGSNKTTIAAYIEEKYWA---PPDFKRLLSAKLKYLAGTGKLVKIKRK 186
++ +AITTLKE GS+ + +IE KY +F + LS +K GKLVK+K
Sbjct: 65 MVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGS 124
Query: 187 YRIAPTL 193
++++ L
Sbjct: 125 FKLSEAL 131
>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2
Length = 743
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTI 31
K KWT EE+ LKA V KHG G+W+TI
Sbjct: 31 KVKWTPEEDETLKALVKKHGQGEWKTI 57
>sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1
Length = 265
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 128 DNLIMEAITTLKEPGGSNKTTIAAYIEEKY-WAPPDFKRLLSAKLKYLAGTGKLVKIKRK 186
+ +I +AI +LKE GS++ IA +IEEK P +FK+LL LK +GKL+K+K
Sbjct: 66 EEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGS 125
Query: 187 YRIA 190
++++
Sbjct: 126 FKLS 129
>sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3
Length = 241
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 129 NLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPD-----FKRLLSAKLKYLAGTGKLVKI 183
++ +AI +LKE GS+ + +IE KY D F + LS LK GKLVK+
Sbjct: 30 QMVTDAILSLKERDGSSLPALKKFIEAKYGK--DIHDKKFPKTLSLALKTFVKNGKLVKV 87
Query: 184 KRKYRIA 190
K Y+++
Sbjct: 88 KNSYKLS 94
>sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1
Length = 287
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 130 LIMEAITTLKEPGGSNKTTIAAYIEEKYWA-PPDFKRLLSAKLKYLAGTGKLVKIKRKYR 188
+I +AI TLKE GS++ I +IEEK + P +FK+LL +LK + KLVK+K Y+
Sbjct: 62 MIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYK 121
Query: 189 I 189
+
Sbjct: 122 L 122
>sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1
Length = 229
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 130 LIMEAITTLKEPGGSNKTTIAAYIEEKY-WAPPDFKRLLSAKLKYLAGTGKLVKIKRKYR 188
+I +AI+TLKE GS++ I ++E+K+ P +F++LL LK L +GKLVK+K ++
Sbjct: 57 MISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFK 116
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 8 WTQEEEAALKAGVIKHGAGKWRTILKDPEFSGV 40
WT+EE+ L GV K+G G W I DP F G+
Sbjct: 1175 WTKEEDEKLLIGVFKYGYGSWTQIRDDP-FLGI 1206
>sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A OS=Glycine max PE=2 SV=1
Length = 176
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 122 RSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKL 180
+S+ +I++ + L EP GSNK+ I+ YIE Y PD +L + L + +G+L
Sbjct: 10 QSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDAT-VLGSHLNKMKDSGEL 67
>sp|Q6E434|TRF1_SCHPO Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1
Length = 485
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSG-------VLYLRSNVDLKDKWRN 55
A ++ WT+EEE AL G+ +W IL E G VL R+ V LKDK RN
Sbjct: 403 ANRRSWTKEEEEALLDGLDLVKGPRWSQIL---ELYGPGGKKSEVLKYRNQVQLKDKARN 459
Query: 56 MSVM 59
M +
Sbjct: 460 MKLF 463
>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4
PE=2 SV=2
Length = 257
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRN 55
MG K WT EE+ L A + +HG G WR + P+ +G+ LR + +W N
Sbjct: 10 MGLKKGPWTPEEDKVLVAHIQRHGHGNWRAL---PKQAGL--LRCGKSCRLRWIN 59
>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
Length = 316
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
+G K WT EE+ L + + +HG G WR I P +G+ LR + + +W N
Sbjct: 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRAI---PSNTGL--LRCSKSCRLRWTNY 60
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
++ +T E AL V + G G+WR + K F+ V + R+ VDLKDKW+ +
Sbjct: 315 RRPFTVSEVEALVQAVERLGTGRWRDV-KSHAFNHVNH-RTYVDLKDKWKTL 364
>sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hrp3 PE=1 SV=1
Length = 1388
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 7 KWTQEEEAALKAGVIKHGAGKWRTILKDPEF 37
+W E++ L +G+ KHG G W I DPE
Sbjct: 1122 QWGPREDSMLLSGICKHGFGAWLEIRDDPEL 1152
>sp|P54671|H1_DICDI Histone H1 OS=Dictyostelium discoideum GN=H1 PE=1 SV=3
Length = 180
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 120 PKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPD-FKRLLSAKLKYLAGTG 178
PK + +I AI K+ GS++ I YIE Y PD FK L LK L G
Sbjct: 20 PKPNHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKG 79
Query: 179 KLVKIKRKYRIA 190
L +K Y+++
Sbjct: 80 TLTMVKASYKLS 91
>sp|P48016|ATH1_YEAST Vacuolar acid trehalase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ATH1 PE=1 SV=1
Length = 1211
Score = 35.4 bits (80), Expect = 0.52, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 63 WGSRDKSRLAVKRIPHIAKSEENSLALSSTIVQSDEEEIVDAKPLAVSGATPQIAAAPKR 122
WG R +++ +PH K E ++ + S +++++ G A P
Sbjct: 1024 WGQRPAKNISISILPHSEKVENLFANVTEIMQNSGNDQLLN----ETIGQLLDNAGIPVE 1079
Query: 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLS--AKLKYLAGTGKL 180
+++ D + E +L + + A + +W D +L+ +L +L K
Sbjct: 1080 NVIDFDGIEQEDDESLDD--------VQALL---HWKKEDLAKLIEQIPRLNFL--KRKF 1126
Query: 181 VKIKRKYRIAPTLPFQDRRRN-SMLLLEGRQRISHKVNNDDINVLTKSQID 230
VKI ++P+ P+ + RN S++ + R + ++ D + V K D
Sbjct: 1127 VKILDNVPVSPSEPYYEASRNQSLIEILPSNRTTFTIDYDKLQVGDKGNTD 1177
>sp|B0G0Y5|MYBAA_DICDI Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1
Length = 971
Score = 34.7 bits (78), Expect = 0.97, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM---SVMSN 61
K WT+EE+ L++ V HG +W+ I + +L LR+ +++W N S+ +
Sbjct: 757 KGHWTKEEDEKLRSLVDLHGTKRWKYI------ASLLCLRNGRQCRERWSNQLDPSIKRD 810
Query: 62 GW 63
W
Sbjct: 811 AW 812
>sp|P10290|MYBC_MAIZE Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
G + WT +E+ AL A V HG GKWR + P+ +G+ R + +W N
Sbjct: 11 GVKRGAWTSKEDDALAAYVKAHGEGKWREV---PQKAGL--RRCGKSCRLRWLNY 60
>sp|P15869|H1B_STRPU Histone H1-beta, late embryonic OS=Strongylocentrotus purpuratus
PE=3 SV=1
Length = 211
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 130 LIMEAITTLKEPGGSNKTTIAAYIEEKY 157
+++ AIT LKE GGS+ I YIE+ Y
Sbjct: 24 MVLAAITALKERGGSSAQAIRKYIEKNY 51
>sp|P27898|MYBP_MAIZE Myb-related protein P OS=Zea mays GN=P PE=2 SV=1
Length = 399
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 1 MGAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLK 50
+G + +WT EE+ L + +HG G WR++ P+ +G+L + L+
Sbjct: 10 VGLKRGRWTAEEDQLLANYIAEHGEGSWRSL---PKNAGLLRCGKSCRLR 56
>sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein OS=Mus musculus GN=Immt PE=1
SV=1
Length = 757
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 101 IVDAKPLAVSGATPQIAAAPKR---SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKY 157
I DAK ++GATP I AA R IV LDN++ + + S ++ Y E
Sbjct: 308 IEDAKKREIAGATPHITAAEGRLHNMIVDLDNVVKKV-----QAAQSEAKVVSQYHELVV 362
Query: 158 WAPPDFKRLLSA 169
A DF++ L +
Sbjct: 363 QARDDFRKELDS 374
>sp|P40262|H1E_CHIPA Histone H1E OS=Chironomus pallidivittatus PE=3 SV=1
Length = 235
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 127 LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGT---GKLVKI 183
+ +++ AITTLKE GGS+ I ++ +Y D ++L+ K+L + G L++
Sbjct: 54 VSEMVVNAITTLKERGGSSLIAIKKFVAAQYKV--DVEKLVPFIKKFLKASVAKGTLLQA 111
Query: 184 KRK 186
K K
Sbjct: 112 KGK 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,945,773
Number of Sequences: 539616
Number of extensions: 3951648
Number of successful extensions: 19161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 278
Number of HSP's that attempted gapping in prelim test: 17634
Number of HSP's gapped (non-prelim): 1386
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)