Query 022048
Match_columns 303
No_of_seqs 296 out of 879
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hst_A Histone H5; chromosomal 99.9 1E-22 3.5E-27 161.9 8.3 74 120-193 3-81 (90)
2 1uss_A Histone H1; DNA binding 99.9 1.6E-22 5.5E-27 160.0 8.9 74 120-193 3-83 (88)
3 1uhm_A Histone H1, histone HHO 99.9 1.4E-22 4.8E-27 156.7 7.6 70 122-191 2-77 (78)
4 1ust_A Histone H1; DNA binding 99.8 9.8E-22 3.4E-26 157.1 6.7 74 120-193 3-82 (93)
5 2rqp_A Heterochromatin protein 99.8 7.2E-22 2.5E-26 155.9 2.0 73 120-192 5-84 (88)
6 1ghc_A GH1; chromosomal protei 99.8 1.7E-20 5.8E-25 143.4 1.0 67 123-190 2-74 (75)
7 1x58_A Hypothetical protein 49 99.8 4E-19 1.4E-23 132.6 5.9 55 3-61 6-60 (62)
8 2lso_A Histone H1X; structural 99.6 6.2E-20 2.1E-24 143.8 0.0 69 124-192 5-79 (83)
9 2aje_A Telomere repeat-binding 99.7 2.2E-18 7.5E-23 140.7 7.8 59 2-62 10-68 (105)
10 2roh_A RTBP1, telomere binding 99.7 6E-18 2.1E-22 141.4 5.0 58 2-61 28-85 (122)
11 2juh_A Telomere binding protei 99.7 8.2E-18 2.8E-22 140.4 4.2 58 2-61 14-71 (121)
12 2ckx_A NGTRF1, telomere bindin 99.7 9.5E-18 3.2E-22 131.6 4.2 54 6-61 1-54 (83)
13 3sjm_A Telomeric repeat-bindin 99.7 2.8E-17 9.5E-22 122.8 5.6 54 3-60 9-62 (64)
14 1w0t_A Telomeric repeat bindin 99.6 4.8E-16 1.6E-20 111.1 5.7 52 4-59 1-52 (53)
15 1ity_A TRF1; helix-turn-helix, 99.6 5.6E-15 1.9E-19 110.8 6.7 56 2-61 7-62 (69)
16 1guu_A C-MYB, MYB proto-oncoge 99.5 7.7E-14 2.6E-18 98.9 5.8 49 4-58 2-50 (52)
17 1gvd_A MYB proto-oncogene prot 99.4 1.6E-13 5.6E-18 97.3 6.2 49 4-58 2-50 (52)
18 2d9a_A B-MYB, MYB-related prot 99.4 1.4E-13 4.8E-18 100.3 5.9 52 2-59 5-56 (60)
19 2dim_A Cell division cycle 5-l 99.4 9E-13 3.1E-17 98.9 7.0 52 2-59 6-57 (70)
20 1x41_A Transcriptional adaptor 99.3 8.7E-13 3E-17 96.6 5.8 53 2-60 5-57 (60)
21 2elk_A SPCC24B10.08C protein; 99.3 1.1E-12 3.8E-17 95.6 5.0 48 4-57 8-56 (58)
22 1gv2_A C-MYB, MYB proto-oncoge 99.2 3.5E-11 1.2E-15 96.0 7.4 50 3-58 2-51 (105)
23 2llk_A Cyclin-D-binding MYB-li 99.2 2.1E-11 7E-16 93.5 5.6 51 2-60 20-70 (73)
24 2yum_A ZZZ3 protein, zinc fing 99.2 2.3E-11 8E-16 92.2 5.4 52 3-60 6-62 (75)
25 2cu7_A KIAA1915 protein; nucle 99.2 2.2E-11 7.5E-16 92.0 5.1 52 3-61 7-58 (72)
26 2k9n_A MYB24; R2R3 domain, DNA 99.1 4.7E-11 1.6E-15 96.0 6.3 48 5-58 1-48 (107)
27 2din_A Cell division cycle 5-l 99.1 3.2E-11 1.1E-15 89.4 4.3 50 3-60 7-56 (66)
28 3zqc_A MYB3; transcription-DNA 99.1 8.1E-11 2.8E-15 97.8 7.0 48 5-58 2-49 (131)
29 3osg_A MYB21; transcription-DN 99.1 9.4E-11 3.2E-15 96.9 6.8 50 2-58 8-57 (126)
30 1h8a_C AMV V-MYB, MYB transfor 99.1 1.2E-10 4E-15 96.3 6.9 51 2-58 24-74 (128)
31 2yus_A SWI/SNF-related matrix- 99.1 7.7E-11 2.6E-15 91.3 4.5 47 4-57 17-63 (79)
32 3zqc_A MYB3; transcription-DNA 99.1 3.8E-10 1.3E-14 93.8 8.1 61 3-70 52-112 (131)
33 1gv2_A C-MYB, MYB proto-oncoge 99.0 3.4E-10 1.1E-14 90.3 6.4 50 3-59 54-103 (105)
34 3osg_A MYB21; transcription-DN 99.0 4.9E-10 1.7E-14 92.6 6.0 52 3-61 60-111 (126)
35 2k9n_A MYB24; R2R3 domain, DNA 99.0 4.5E-10 1.5E-14 90.3 4.9 50 3-59 51-100 (107)
36 2cqr_A RSGI RUH-043, DNAJ homo 99.0 7.1E-10 2.4E-14 84.9 5.6 52 4-61 17-71 (73)
37 1h8a_C AMV V-MYB, MYB transfor 98.9 1.2E-09 4E-14 90.2 6.4 50 3-59 77-126 (128)
38 1h89_C C-MYB, MYB proto-oncoge 98.9 1.9E-09 6.5E-14 91.9 7.1 50 3-58 56-105 (159)
39 2ltp_A Nuclear receptor corepr 98.4 1.4E-10 4.8E-15 91.3 0.0 52 3-61 14-65 (89)
40 1h89_C C-MYB, MYB proto-oncoge 98.9 3.1E-10 1E-14 96.8 1.7 51 3-59 4-54 (159)
41 2cjj_A Radialis; plant develop 98.7 1.7E-08 5.9E-13 80.5 5.0 50 4-59 7-59 (93)
42 1ign_A Protein (RAP1); RAP1,ye 98.6 5E-08 1.7E-12 89.7 5.6 53 3-61 6-63 (246)
43 2eqr_A N-COR1, N-COR, nuclear 98.4 5.2E-07 1.8E-11 66.1 6.0 49 4-59 11-59 (61)
44 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.1E-06 3.7E-11 66.9 5.7 50 3-59 6-58 (72)
45 3hm5_A DNA methyltransferase 1 98.0 5.1E-06 1.8E-10 66.4 4.9 52 6-59 31-82 (93)
46 4b4c_A Chromodomain-helicase-D 97.9 1.7E-05 5.9E-10 69.7 6.7 55 5-59 134-196 (211)
47 2iw5_B Protein corest, REST co 97.8 1.4E-05 4.9E-10 73.0 5.3 52 3-61 131-182 (235)
48 1wgx_A KIAA1903 protein; MYB D 97.8 3.9E-05 1.3E-09 58.7 6.4 48 6-59 9-59 (73)
49 1fex_A TRF2-interacting telome 97.6 6.9E-05 2.4E-09 54.8 4.9 49 5-58 2-58 (59)
50 2xb0_X Chromo domain-containin 97.4 7.2E-05 2.5E-09 69.8 3.7 32 7-38 170-201 (270)
51 4iej_A DNA methyltransferase 1 97.3 0.00027 9.4E-09 56.4 4.9 52 6-59 31-82 (93)
52 2yqk_A Arginine-glutamic acid 97.0 0.0017 5.8E-08 47.7 6.3 52 4-61 8-59 (63)
53 2ebi_A DNA binding protein GT- 97.0 0.00022 7.5E-09 54.8 1.5 53 5-59 4-65 (86)
54 1ofc_X ISWI protein; nuclear p 96.9 0.00055 1.9E-08 64.8 3.9 57 3-59 210-275 (304)
55 2crg_A Metastasis associated p 96.6 0.0067 2.3E-07 45.4 7.3 52 4-61 7-58 (70)
56 2xag_B REST corepressor 1; ami 96.5 0.0022 7.4E-08 64.2 5.4 51 4-61 379-429 (482)
57 4eef_G F-HB80.4, designed hema 96.4 0.0011 3.9E-08 50.8 2.0 43 6-54 21-66 (74)
58 2y9y_A Imitation switch protei 95.8 0.0066 2.3E-07 58.9 4.5 56 4-59 227-291 (374)
59 4a69_C Nuclear receptor corepr 95.7 0.017 5.9E-07 45.6 5.8 48 5-59 43-90 (94)
60 1ug2_A 2610100B20RIK gene prod 94.8 0.035 1.2E-06 44.3 4.9 54 2-61 30-85 (95)
61 1irz_A ARR10-B; helix-turn-hel 94.1 0.092 3.2E-06 39.1 5.5 53 2-58 4-61 (64)
62 2lr8_A CAsp8-associated protei 92.9 0.011 3.8E-07 44.7 0.0 52 2-60 11-64 (70)
63 4b4c_A Chromodomain-helicase-D 93.1 0.079 2.7E-06 46.1 4.3 50 4-57 6-57 (211)
64 2a07_F Forkhead box protein P2 92.6 0.22 7.5E-06 39.4 5.9 57 123-183 4-64 (93)
65 3g73_A Forkhead box protein M1 92.5 0.24 8.4E-06 42.0 6.4 71 119-193 15-96 (142)
66 2c6y_A Forkhead box protein K2 91.8 0.31 1.1E-05 39.7 6.0 59 121-183 15-77 (111)
67 1ign_A Protein (RAP1); RAP1,ye 91.6 0.2 6.7E-06 46.1 5.1 51 4-60 93-200 (246)
68 2hfh_A Genesis, HFH-2; HNF-3 h 91.3 0.38 1.3E-05 39.1 6.0 58 122-183 3-64 (109)
69 2hdc_A Protein (transcription 91.3 0.32 1.1E-05 38.7 5.4 56 124-183 4-63 (97)
70 1vtn_C HNF-3/FORK head DNA-rec 91.2 0.35 1.2E-05 38.8 5.6 57 123-183 4-64 (102)
71 1kq8_A HFH-1, hepatocyte nucle 89.9 0.38 1.3E-05 38.5 4.7 56 124-183 4-63 (100)
72 3bpy_A FORK head domain, forkh 89.1 0.49 1.7E-05 36.7 4.7 58 123-184 6-72 (85)
73 3l2c_A Forkhead box protein O4 88.7 0.53 1.8E-05 38.2 4.8 59 122-184 24-91 (110)
74 3coa_C Forkhead box protein O1 87.4 1.2 4.1E-05 36.6 6.2 57 123-183 12-77 (117)
75 2xb0_X Chromo domain-containin 87.0 1 3.5E-05 41.8 6.3 52 4-59 2-55 (270)
76 1e17_A AFX; DNA binding domain 84.2 1.1 3.6E-05 38.5 4.5 67 123-193 41-123 (150)
77 1r7j_A Conserved hypothetical 72.1 6.2 0.00021 30.3 5.2 57 126-191 5-61 (95)
78 2xag_B REST corepressor 1; ami 68.5 1 3.5E-05 45.0 0.0 47 6-59 190-236 (482)
79 1qgp_A Protein (double strande 63.6 12 0.00041 27.7 5.1 58 127-191 15-75 (77)
80 1ofc_X ISWI protein; nuclear p 59.3 11 0.00036 35.6 5.0 48 6-59 111-158 (304)
81 1y0u_A Arsenical resistance op 53.6 32 0.0011 25.4 6.1 44 142-192 42-85 (96)
82 1sfu_A 34L protein; protein/Z- 47.7 28 0.00095 26.4 4.8 52 127-185 13-64 (75)
83 1qbj_A Protein (double-strande 47.5 53 0.0018 24.6 6.4 58 128-192 12-72 (81)
84 3fbl_A Putative uncharacterize 45.8 18 0.00061 27.1 3.4 29 129-157 51-82 (82)
85 1ldd_A APC2WHB, anaphase promo 44.6 15 0.00052 27.7 2.9 26 165-190 48-74 (74)
86 1tbx_A ORF F-93, hypothetical 42.9 56 0.0019 23.9 5.9 51 128-184 10-60 (99)
87 2lnb_A Z-DNA-binding protein 1 42.1 15 0.00052 28.3 2.5 55 127-190 20-75 (80)
88 2kpm_A Uncharacterized protein 40.4 43 0.0015 26.8 5.1 34 125-158 20-54 (105)
89 2heo_A Z-DNA binding protein 1 38.6 72 0.0025 22.5 5.7 54 127-189 11-65 (67)
90 3jth_A Transcription activator 38.2 76 0.0026 23.2 6.0 47 137-191 31-81 (98)
91 1psm_A SPAM-H1; polymorphic an 37.9 0.79 2.7E-05 30.5 -4.5 15 254-268 19-33 (38)
92 2dk5_A DNA-directed RNA polyme 35.6 1.4E+02 0.0049 22.5 8.1 53 125-185 19-71 (91)
93 2kzv_A Uncharacterized protein 33.7 66 0.0023 24.9 5.1 38 126-163 8-48 (92)
94 1p6r_A Penicillinase repressor 32.8 1E+02 0.0036 21.7 5.9 52 127-184 10-61 (82)
95 3cuo_A Uncharacterized HTH-typ 31.9 97 0.0033 22.1 5.6 45 130-184 28-72 (99)
96 2v9v_A Selenocysteine-specific 30.8 76 0.0026 24.6 5.2 61 126-191 63-130 (135)
97 1uxc_A FRUR (1-57), fructose r 29.7 26 0.0009 25.0 2.0 39 136-174 4-45 (65)
98 1oyi_A Double-stranded RNA-bin 28.6 48 0.0016 25.3 3.4 49 129-185 17-65 (82)
99 2x4h_A Hypothetical protein SS 26.9 99 0.0034 23.7 5.2 54 129-189 16-70 (139)
100 2jt1_A PEFI protein; solution 25.6 1.4E+02 0.0049 22.0 5.6 22 165-186 39-60 (77)
101 2og0_A Excisionase; protein-DN 25.4 61 0.0021 22.6 3.2 26 168-193 18-47 (52)
102 1mkm_A ICLR transcriptional re 24.0 1.1E+02 0.0039 26.4 5.5 53 131-192 13-66 (249)
No 1
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.87 E-value=1e-22 Score=161.94 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCc-----ceecCCCC
Q 022048 120 PKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKR-----KYRIAPTL 193 (303)
Q Consensus 120 ~~~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~-----syKl~~~~ 193 (303)
...+||+|.+||+|||.+|+||+|||++||++||+++|+++++|+.+|+.+|++||++|.|+|++| +|||++..
T Consensus 3 ~~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 3 RSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp ---CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 356899999999999999999999999999999999999977899999999999999999999998 99998764
No 2
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.87 E-value=1.6e-22 Score=159.98 Aligned_cols=74 Identities=18% Similarity=0.400 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC----CccHHHHHHHHHHhhhhCCceeeeCc---ceecCCC
Q 022048 120 PKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA----PPDFKRLLSAKLKYLAGTGKLVKIKR---KYRIAPT 192 (303)
Q Consensus 120 ~~~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v----p~nf~~lL~~~LKrlV~~GkLvkvK~---syKl~~~ 192 (303)
...+||+|.+||+|||.+|+||+|||++||++||+++|++ |++|+.+|+.+|++||++|+|+|++| +|||++.
T Consensus 3 ~~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k 82 (88)
T 1uss_A 3 SSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKK 82 (88)
T ss_dssp TCCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCS
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCcc
Confidence 3568999999999999999999999999999999999985 68999999999999999999999998 9999874
Q ss_pred C
Q 022048 193 L 193 (303)
Q Consensus 193 ~ 193 (303)
.
T Consensus 83 ~ 83 (88)
T 1uss_A 83 K 83 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.87 E-value=1.4e-22 Score=156.72 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC--C-ccHHHHHHHHHHhhhhCCceeeeC---cceecCC
Q 022048 122 RSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA--P-PDFKRLLSAKLKYLAGTGKLVKIK---RKYRIAP 191 (303)
Q Consensus 122 ~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--p-~nf~~lL~~~LKrlV~~GkLvkvK---~syKl~~ 191 (303)
.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+|+++|++|+|+|+| |+|||++
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 47999999999999999999999999999999999986 5 899999999999999999999976 5999975
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.85 E-value=9.8e-22 Score=157.12 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC--C-ccHHHHHHHHHHhhhhCCceeeeC---cceecCCCC
Q 022048 120 PKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA--P-PDFKRLLSAKLKYLAGTGKLVKIK---RKYRIAPTL 193 (303)
Q Consensus 120 ~~~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--p-~nf~~lL~~~LKrlV~~GkLvkvK---~syKl~~~~ 193 (303)
...+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+|++||++|.|+|++ |+|||++..
T Consensus 3 k~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k~ 82 (93)
T 1ust_A 3 EEASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKK 82 (93)
T ss_dssp CSSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSCC
T ss_pred CCCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCCC
Confidence 3568999999999999999999999999999999999985 6 899999999999999999999976 699998743
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.83 E-value=7.2e-22 Score=155.92 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC-C-CccHHHHHHHHHHhhhhCCceeeeCc-----ceecCCC
Q 022048 120 PKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW-A-PPDFKRLLSAKLKYLAGTGKLVKIKR-----KYRIAPT 192 (303)
Q Consensus 120 ~~~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v-p~nf~~lL~~~LKrlV~~GkLvkvK~-----syKl~~~ 192 (303)
...+||+|.+||+|||.+|+||+|||++||++||+++|+ + +++|+.+|+.+|+++|++|.|+|++| +|||++.
T Consensus 5 ~~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 5 ASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 456899999999999999999999999999999999998 4 57899999999999999999999998 9999875
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.78 E-value=1.7e-20 Score=143.41 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHh-CCCCccHHHHHHHHHHhhhhCCceeeeCc-----ceecC
Q 022048 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEK-YWAPPDFKRLLSAKLKYLAGTGKLVKIKR-----KYRIA 190 (303)
Q Consensus 123 ~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~-y~vp~nf~~lL~~~LKrlV~~GkLvkvK~-----syKl~ 190 (303)
+||+|.+||+|||.+|+||+|||+++|++||+++ |.++ +++.+|+.+|+++|++|.|+|++| +|||+
T Consensus 2 ~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~~~-~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~ 74 (75)
T 1ghc_A 2 AGPSVTELITKAVSASKERKGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLS 74 (75)
T ss_dssp CSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCCSS-SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSC
T ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCCch-hHHHHHHHHHHHHHhcCCeEeccCCCCccccccC
Confidence 6999999999999999999999999999999999 5565 579999999999999999999998 99986
No 7
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=4e-19 Score=132.57 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=50.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
+.|++||+||++.|++||++||. +|++|+.+|.| |.+||+||||||||||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f---~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF---QKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC---CTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC---ccCcccchHHHHHHHHHhccc
Confidence 57899999999999999999999 99999997655 689999999999999998754
No 8
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.2e-20 Score=143.83 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC-CCccHHHHHHHHHHhhhhCCceeeeCc-----ceecCCC
Q 022048 124 IVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW-APPDFKRLLSAKLKYLAGTGKLVKIKR-----KYRIAPT 192 (303)
Q Consensus 124 hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-vp~nf~~lL~~~LKrlV~~GkLvkvK~-----syKl~~~ 192 (303)
.++|.+||+|||.+|+||+|||++||++||+++|+ .+++|+.+|+.+||++|++|+|+|+|| +|||++.
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k 79 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRK 79 (83)
Confidence 36899999999999999999999999999999995 478999999999999999999999998 9999864
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.74 E-value=2.2e-18 Score=140.73 Aligned_cols=59 Identities=31% Similarity=0.467 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCCC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSNG 62 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~~ 62 (303)
.+++++||.|||++|++||++||.|+|+.|++.+ | ++|.+||++|||||||||++.+..
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-F-EDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-S-SSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhccC
Confidence 4688999999999999999999999999999964 3 367899999999999999998763
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6e-18 Score=141.43 Aligned_cols=58 Identities=29% Similarity=0.507 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
.++|++||.|||++|++||++||.|+|+.|++.+ | .+|.+||++|||||||||++.+.
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA-F-ENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHH-H-SSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999999999953 3 35789999999999999998765
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=8.2e-18 Score=140.44 Aligned_cols=58 Identities=28% Similarity=0.429 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
.++|++||.|||+.|++||++||.|+|+.|+.++.| +|.+||++|||||||||++.+.
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~--~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD--NADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS--CCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc--ccCCCCHHHHHHHHHHHHhhhc
Confidence 468899999999999999999999999999997654 4789999999999999998755
No 12
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.69 E-value=9.5e-18 Score=131.60 Aligned_cols=54 Identities=30% Similarity=0.498 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 6 QKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
++||+|||+.|++||++||.|+|+.|++++. .+|.+||++|||||||||++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~--~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAF--DNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHC--TTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhc--cccCCCCHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999642 35789999999999999998755
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.68 E-value=2.8e-17 Score=122.77 Aligned_cols=54 Identities=44% Similarity=0.735 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
.+|++||+|||+.|+++|++||.|+|+.|++.+. |.+||++||+|||+||++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP----FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC----CCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999999999998543 46899999999999998763
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.61 E-value=4.8e-16 Score=111.12 Aligned_cols=52 Identities=40% Similarity=0.797 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
+|++||+|||+.|+++|++||.|+|..|... |. |.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cC--CCCCCHHHHHHHHHHHHcc
Confidence 4789999999999999999999999999984 22 3389999999999999875
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=5.6e-15 Score=110.81 Aligned_cols=56 Identities=38% Similarity=0.674 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
.+++++||+|||+.|+.+|++||.|+|..|+... . |.+||++||++||+|+++...
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~--~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--K--FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--C--CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--C--cCCCCHHHHHHHHHHHcCCCC
Confidence 4678999999999999999999999999999832 1 238999999999999988754
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.45 E-value=7.7e-14 Score=98.86 Aligned_cols=49 Identities=31% Similarity=0.630 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
.+.+||+|||+.|+++|++||.++|..|.. .|.+||..||++||.+++.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN------YLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH------TSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999998 2569999999999999864
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=1.6e-13 Score=97.29 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
.|.+||+|||+.|+++|++||.++|..|.. .|.+||..||++||.|++.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH------HcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999998 2569999999999999874
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=1.4e-13 Score=100.30 Aligned_cols=52 Identities=25% Similarity=0.454 Sum_probs=47.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
+..+.+||+|||+.|+++|.+||.++|..|.. .|.+||..||++||.+++..
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS------HFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH------HCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HccCCCHHHHHHHHHHHcCC
Confidence 45788999999999999999999999999998 25699999999999999765
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9e-13 Score=98.89 Aligned_cols=52 Identities=27% Similarity=0.466 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
+.++++||+|||+.|+.+|++||.++|..|.. .|.+||..||++||.|++..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS------LLHRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH------HSTTCCHHHHHHHHHHTSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HhcCCCHHHHHHHHHHHcCC
Confidence 45688999999999999999999999999988 25699999999999998765
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=8.7e-13 Score=96.56 Aligned_cols=53 Identities=19% Similarity=0.424 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
...+.+||+|||+.|+++|++||.++|..|.. .|.+||..||++||.+++...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVAN------QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH------HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH------HhCCCCHHHHHHHHHHHccCC
Confidence 35688999999999999999999999999998 256899999999999997653
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.32 E-value=1.1e-12 Score=95.57 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCC-CCChHHHHHHHHhhc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLY-LRSNVDLKDKWRNMS 57 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~-~RT~vdLKDKWRnl~ 57 (303)
.+.+||+|||..|+++|++||.++|..|.. .+. +||..||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~------~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIAD------YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHH------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999988 256 899999999999874
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.19 E-value=3.5e-11 Score=96.00 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
-.+++||+|||+.|+.+|++||.++|..|.. .|++||+.||++||++++.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhh------hhcCCCHHHHHHHHHhccC
Confidence 4689999999999999999999999999987 3579999999999999863
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=93.47 Aligned_cols=51 Identities=39% Similarity=0.423 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
+..+.+||+|||+.|++.|.+||. +|+.|.+ .| +||..+||+||+.|.+..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~------~l-gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA------AL-GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH------HH-TSCHHHHHHHHHHCSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH------Hh-CCCHHHHHHHHHHHHHHc
Confidence 356889999999999999999998 6999988 36 999999999999887654
No 24
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=92.16 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-----CchhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGA-----GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~-----G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
..+.+||.|||+.|+++|++||. ++|..|.. .|.+||..||++||.+++...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~------~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD------ELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH------HHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH------HhCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999996 79999988 256899999999998887653
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.17 E-value=2.2e-11 Score=91.98 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
..+.+||+|||+.|+++|++||. +|..|.. .|.+||..||++||.++++...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~------~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK------LIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999 9999998 3569999999999999877643
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.14 E-value=4.7e-11 Score=96.05 Aligned_cols=48 Identities=29% Similarity=0.547 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 5 r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
|++||+|||+.|+.+|++||.++|..|.. .|++||+.||++||.|++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ------LMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH------HTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh------hcCCCCHHHHHHHHHHHHc
Confidence 57999999999999999999999999987 3569999999999999865
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.2e-11 Score=89.39 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
..+.+||.|||+.|+..|+.||. +|..|.. |.+||..||++||.+++...
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-------~~gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-------IIGRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-------HHSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-------ccCcCHHHHHHHHHHHhChH
Confidence 46789999999999999999998 9999998 23799999999999997653
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.12 E-value=8.1e-11 Score=97.82 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 5 r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
|++||+|||+.|+.+|++||.++|..|.. .|++||+.||++||+|++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS------FLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT------SCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH------HHCCCCHHHHHHHHhhccC
Confidence 68999999999999999999999999987 3579999999999999874
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.11 E-value=9.4e-11 Score=96.92 Aligned_cols=50 Identities=36% Similarity=0.652 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
+.+|++||+|||+.|+.+|++||. +|..|.. .|.+||..||++||+|++.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA------TFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH------TCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHhhhcc
Confidence 467899999999999999999998 9999987 2569999999999999874
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.10 E-value=1.2e-10 Score=96.25 Aligned_cols=51 Identities=29% Similarity=0.477 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
+..+++||+|||+.|+.+|++||.++|..|.. .|++||..||++||.+++.
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK------HLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH------HSSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH------HhcCCcHHHHHHHHHHhcc
Confidence 34688999999999999999999999999988 3579999999999999764
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.07 E-value=7.7e-11 Score=91.27 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMS 57 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~ 57 (303)
.+.+||.|||..|+++|++|| ++|..|.. .+.+||..||+.||.++.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~------~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE------HVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH------HHSSCCHHHHHHHHTTSC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH------HcCCCCHHHHHHHHHHhc
Confidence 467999999999999999999 89999998 246899999999999983
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.05 E-value=3.8e-10 Score=93.75 Aligned_cols=61 Identities=26% Similarity=0.462 Sum_probs=52.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCCCCCCccccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSNGWGSRDKSR 70 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~~~gs~~k~~ 70 (303)
..+.+||+|||+.|+.+|.+||. +|..|.. .|++||..+|++||.++++.....++..+..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK------LIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT------TSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 46789999999999999999996 9999987 3679999999999999998877555555443
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.02 E-value=3.4e-10 Score=90.26 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..+.+||+|||+.|+.+|.+||. +|..|.. .|++||..+|++||+++++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT------TCTTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHHHhc
Confidence 46789999999999999999997 9999987 36799999999999998764
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.98 E-value=4.9e-10 Score=92.59 Aligned_cols=52 Identities=27% Similarity=0.542 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
..+.+||+|||+.|+.+|.+||. +|..|.. .|++||..+|++||+++++.-+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK------FFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT------TSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999996 9999997 3679999999999999987633
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.96 E-value=4.5e-10 Score=90.29 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..+.+||+|||..|+.+|.+||. +|..|.. .|++||..+|++||.++.+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK------FLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999998 9999997 35799999999999998775
No 36
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=7.1e-10 Score=84.85 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 4 PKQKWTQEEEAALKAGVIKHG---AGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G---~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
.+.+||.||+..|+.+|.+|| +.+|..|.. .|++||..||++||.+|.....
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~------~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR------CVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG------GCSSSCHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHccc
Confidence 457899999999999999999 358999998 3579999999999999977643
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.93 E-value=1.2e-09 Score=90.22 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..+.+||+|||+.|+.+|.+||. +|..|.. .|++||..+|++||+++++.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG------GSTTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhc
Confidence 45789999999999999999997 9999997 36799999999999998765
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.91 E-value=1.9e-09 Score=91.88 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
..+.+||+|||+.|+.+|++||.++|..|.. .|++||+.||++||.|++.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH------TSTTCCHHHHHHHHHHTTC
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHH------HcCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999989999987 3579999999999999864
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.43 E-value=1.4e-10 Score=91.33 Aligned_cols=52 Identities=27% Similarity=0.454 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
..+.+||+|||+.|+.+|.+||. +|..|.. .|.+||..||+++|.++++..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~------~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR------MVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 45789999999999999999999 8999987 3579999999999999987744
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.89 E-value=3.1e-10 Score=96.81 Aligned_cols=51 Identities=29% Similarity=0.582 Sum_probs=10.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..+++||+|||+.|+.+|++||.++|..|.. .|++||+.||++||+|++..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p 54 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIAN------YLPNRTDVQCQHRWQKVLNP 54 (159)
T ss_dssp ---------------------------------------------CHHHHHHTTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HcCCCCHHHHHHHHHHccCC
Confidence 3567999999999999999999999999987 35699999999999998754
No 41
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.67 E-value=1.7e-08 Score=80.48 Aligned_cols=50 Identities=12% Similarity=0.342 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 4 PKQKWTQEEEAALKAGVIKHG---AGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G---~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
.+.+||.|||..|..++.+|| +.+|..|+. .|++||..+|+.||.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~------~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVAR------AVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH------HSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999998 457999998 36799999999999999644
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.56 E-value=5e-08 Score=89.74 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCc-----hhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGK-----WRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~-----W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
..|.+||+|||+.|++.|++||..+ |..|.+ .|+|||..+||+||+++++...
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk------~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH------YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT------TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH------HcCCCCHHHHHHHHHHHHhhhc
Confidence 3578999999999999999999853 999997 4789999999999999887755
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=5.2e-07 Score=66.12 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
...+||+||++.+.+++.+||. +|..|.. .|++||..||...|....+.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~------~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIAS------YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-CHHHHHH------HCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHhcCC
Confidence 3468999999999999999996 9999986 36799999999999887665
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.27 E-value=1.1e-06 Score=66.91 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGA---GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~---G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
.....||.||+..|..++.+|+. .+|..|... + +||..||+.+|..|...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~------l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE------L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH------H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH------h-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999994 579999982 3 79999999999999766
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.01 E-value=5.1e-06 Score=66.36 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 6 QKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
.+||.||++.|.+.+++||. +|..|..-+.+.+ +.+||-.|||+||-.+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~-~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTT-SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCC-CCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999998 9999998554432 3589999999999877654
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.90 E-value=1.7e-05 Score=69.70 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhccCCCcc--cc------CCCCChHHHHHHHHhhccc
Q 022048 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFS--GV------LYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 5 r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~--~~------l~~RT~vdLKDKWRnl~k~ 59 (303)
...||.+||..|+.||.+||.|+|..|..||.++ +- ...++.+.|..|-..|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999743 11 2467788999997666543
No 47
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.84 E-value=1.4e-05 Score=72.97 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 3 APKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
+...+||+||...+++|+.+||. +|..|.+ .+.+||..||+..|.+..+..+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk------~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH------HHSSCCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHhh
Confidence 34568999999999999999997 9999988 3579999999999998887644
No 48
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.80 E-value=3.9e-05 Score=58.73 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 6 QKWTQEEEAALKAGVIKHGA---GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~---G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..||.||+.+|..++..|+. ++|..|.. .+.+||..+|+.+|..|.+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~------~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA------AVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH------HTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH------HcCCCCHHHHHHHHHHHHhc
Confidence 47999999999999999986 68999998 35689999999999998554
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.61 E-value=6.9e-05 Score=54.79 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCchhhhccCCCccccCCCCChHHHHHHHHhhcc
Q 022048 5 KQKWTQEEEAALKAGVIKH--------GAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSV 58 (303)
Q Consensus 5 r~~WT~EE~~~L~~GV~k~--------G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (303)
|.+||.|||..|++-|.+| |..-|+.|... .++.+|-.+++|||++.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-----~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-----SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-----CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-----HCCCCCHHHHHHHHHHHcc
Confidence 7899999999999999999 66679999771 2468999999999998654
No 50
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.43 E-value=7.2e-05 Score=69.76 Aligned_cols=32 Identities=44% Similarity=0.831 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhccCCCcc
Q 022048 7 KWTQEEEAALKAGVIKHGAGKWRTILKDPEFS 38 (303)
Q Consensus 7 ~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~ 38 (303)
.|+.+||..|+.||.+||.|+|..|..||.+.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~ 201 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLG 201 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCcccC
Confidence 39999999999999999999999999999754
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.27 E-value=0.00027 Score=56.39 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 6 QKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..||.||++.|.+.+++|+- +|--|..-+.+.+ +..||--|||+||-.+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~-~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTT-SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCC-CCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999998 9999998665542 4589999999999766543
No 52
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.0017 Score=47.67 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
....||+||-....+|+.+||. +|..|..+ ++..||..||..-|-...+...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~~ 59 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE-----LLPNKETGELITFYYYWKKTSG 59 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH-----SCTTSCHHHHHHHHHHHHCSSC
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCcHHHHHHHHhcccCCCC
Confidence 3468999999999999999998 99999862 2568999999988877766644
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.96 E-value=0.00022 Score=54.84 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---------CchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 5 KQKWTQEEEAALKAGVIKHGA---------GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 5 r~~WT~EE~~~L~~GV~k~G~---------G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
...||.+|+..|+.....+-. ..|..|... +...=..||+.||++||.||.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~--m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSK--MREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH--HHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999875322 169999772 11000279999999999999877
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.90 E-value=0.00055 Score=64.82 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---Cchhhhc----cCCCc--cccCCCCChHHHHHHHHhhccc
Q 022048 3 APKQKWTQEEEAALKAGVIKHGA---GKWRTIL----KDPEF--SGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 3 ~~r~~WT~EE~~~L~~GV~k~G~---G~W~~I~----~~~~f--~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
++.+.||.|||..|+-++.+||. |+|..|. ..|.| .-+|.+||+.+|..|-..|.+.
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999 9999995 34433 3345799999999999888765
No 55
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.62 E-value=0.0067 Score=45.43 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
....||+||-.....|+.+||. +|..|..+ +++.||..||-.-|-...+...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~~ 58 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQD-----FLPWKSLTSIIEYYYMWKTTDR 58 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT-----TCSSSCHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCCHHHHHHHHHhhcCCch
Confidence 4568999999999999999998 89999873 2568999999999886666544
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.54 E-value=0.0022 Score=64.18 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 4 PKQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
...+||.||-..+++||.+||. +|..|.. ++..||..||+.-|.+..+..+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~------~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHH------HHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HhCCCCHHHHHHHHHHHHHHhC
Confidence 3568999999999999999997 9999987 3568999999999987766644
No 57
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.42 E-value=0.0011 Score=50.80 Aligned_cols=43 Identities=14% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCC---chhhhccCCCccccCCCCChHHHHHHHH
Q 022048 6 QKWTQEEEAALKAGVIKHGAG---KWRTILKDPEFSGVLYLRSNVDLKDKWR 54 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~G---~W~~I~~~~~f~~~l~~RT~vdLKDKWR 54 (303)
..||.||+.+|..++.+|+.+ .|.+|.. .++|||..+|+..|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~------~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQ------YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG------GSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH------HcCCCCHHHHHHHHH
Confidence 479999999999999999886 8999988 367999999998764
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.81 E-value=0.0066 Score=58.95 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---Cchhhhcc----CCCc--cccCCCCChHHHHHHHHhhccc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGA---GKWRTILK----DPEF--SGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~---G~W~~I~~----~~~f--~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
+.+.||.|||..|+-++.+||. |+|..|.. .|.| .=+|..||+..|..|...|++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999 99999854 3443 3336799999999999888754
No 59
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.73 E-value=0.017 Score=45.58 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 5 r~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
...||+||-+.+.+++..||. +|..|.. .|+.||..||-.=|-...+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~------~l~~Kt~~~cV~~YY~~Kk~ 90 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS------FLERKTVAECVLYYYLTKKN 90 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH------TCTTCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH------HcCCCCHHHHHHHHhccccC
Confidence 467999999999999999997 9999965 36799999998776554443
No 60
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.84 E-value=0.035 Score=44.25 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CchhhhccCCCccccCCCCChHHHHHHHHhhcccCC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGA--GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMSN 61 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~--G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (303)
|..---||.|||..++...++-|. ..|..|.. .|.+|+..|+++|++.|.+-..
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~------~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ------QLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH------HHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH------HHccCCHHHHHHHHHHHHHHHH
Confidence 445567999999999999999998 47999877 3678999999999999876533
No 61
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.12 E-value=0.092 Score=39.06 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCc--hhhhccCCCccccCCCCChHHHH---HHHHhhcc
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGAGK--WRTILKDPEFSGVLYLRSNVDLK---DKWRNMSV 58 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~G~--W~~I~~~~~f~~~l~~RT~vdLK---DKWRnl~k 58 (303)
.++|-.||+|.-+..+++|+..|..+ |+.|++. .. ..+.|..+++ .|||..++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~--M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDL--MN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHH--HC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHH--cC--CCCCCHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999543 8899872 22 3578999888 45555543
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.85 E-value=0.011 Score=44.74 Aligned_cols=52 Identities=12% Similarity=0.279 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CchhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 2 GAPKQKWTQEEEAALKAGVIKHGA--GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 2 g~~r~~WT~EE~~~L~~GV~k~G~--G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
|-.--.||.|||..|+..+++-|. ..|..|.. .| +||+-|+++|++.|.+-.
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~------~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKRGPSSKTFAYLAA------KL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 334457999999999999999998 36888876 36 899999999999987653
No 63
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.11 E-value=0.079 Score=46.15 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCchhhhccCCCccccCCCCChHHHHHHHHhhc
Q 022048 4 PKQKWTQEEEAALKAGVIKHG--AGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMS 57 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G--~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~ 57 (303)
....||..|-..|+.++.+|| .+.|..|..+.. |.++|..++++=++.+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~----L~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE----LVDKSETDLRRLGELVH 57 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT----CTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc----cCCCCHHHHHHHHHHHH
Confidence 456899999999999999999 689999998754 56899999998555544
No 64
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=92.63 E-value=0.22 Score=39.41 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC----CCccHHHHHHHHHHhhhhCCceeee
Q 022048 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW----APPDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 123 ~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
+.-+|..||..||..- ..++.++.-|.+||+++|. -+...+.-++..|- -++-|++|
T Consensus 4 Pp~SY~~LI~~AI~~s-p~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLS---ln~~F~kv 64 (93)
T 2a07_F 4 PPFTYATLIRQAIMES-SDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLS---LHKCFVRV 64 (93)
T ss_dssp CSCCHHHHHHHHHHHS-TTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCTTBCCE
T ss_pred CCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCCccccCCCccccccceeee---hhhceeec
Confidence 3457999999999975 3457899999999999985 24566666666553 34455555
No 65
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=92.54 E-value=0.24 Score=41.99 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC-----CCccHHHHHHHHHHhhhhCCceeeeC-----c-ce
Q 022048 119 APKRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW-----APPDFKRLLSAKLKYLAGTGKLVKIK-----R-KY 187 (303)
Q Consensus 119 ~~~~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-----vp~nf~~lL~~~LKrlV~~GkLvkvK-----~-sy 187 (303)
...++.-+|..||..||.... .++.++..|.+||+++|. -+..++.-|+..|- -+.-|+++. | -+
T Consensus 15 ~~~KPpySYa~LI~~AI~~sp-~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLS---ln~~F~r~~~~~GKg~~W 90 (142)
T 3g73_A 15 VSERPPYSYMAMIQFAINSTE-RKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLS---LHDMFVRETSANGKVSFW 90 (142)
T ss_dssp TTSCCSSCHHHHHHHHHHTST-TSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHH---HCTTEEEEECTTSCCEEE
T ss_pred CCCCCCCCHHHHHHHHHHhCC-CCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhh---hhhhheecCCCCCCCceE
Confidence 345555689999999998844 345899999999999996 35667777776553 445666542 3 35
Q ss_pred ecCCCC
Q 022048 188 RIAPTL 193 (303)
Q Consensus 188 Kl~~~~ 193 (303)
.|.|..
T Consensus 91 ~i~p~~ 96 (142)
T 3g73_A 91 TIHPSA 96 (142)
T ss_dssp EECTTT
T ss_pred EECccc
Confidence 666544
No 66
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=91.84 E-value=0.31 Score=39.73 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC----CCccHHHHHHHHHHhhhhCCceeee
Q 022048 121 KRSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW----APPDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 121 ~~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
.++.-+|..||..||.... .+..++.-|.+||+++|+ -+..++.-|+..|- -+.-|++|
T Consensus 15 ~KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 77 (111)
T 2c6y_A 15 SKPPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKV 77 (111)
T ss_dssp CCCSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEE
T ss_pred CCCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhccc
Confidence 4445679999999999853 456799999999999997 26677777776654 45667766
No 67
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=91.61 E-value=0.2 Score=46.15 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-h--------------------------------CC------------------------C
Q 022048 4 PKQKWTQEEEAALKAGVIK-H--------------------------------GA------------------------G 26 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k-~--------------------------------G~------------------------G 26 (303)
-|.+||.|||-.|...|.+ | |+ +
T Consensus 93 iK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~ 172 (246)
T 1ign_A 93 IKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIARE 172 (246)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTT
T ss_pred ccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHH
Confidence 4789999999999999988 2 11 3
Q ss_pred chhhhccCCCccccCCCCChHHHHHHHHhhcccC
Q 022048 27 KWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMS 60 (303)
Q Consensus 27 ~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (303)
.|+.|.+ .+++||.+..+|||+.+++..
T Consensus 173 ~fk~ia~------~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAE------EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHH------HTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHH------HCCCCChhhHHHHHHHHHhhc
Confidence 6888887 256999999999999988763
No 68
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=91.30 E-value=0.38 Score=39.08 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC----CCccHHHHHHHHHHhhhhCCceeee
Q 022048 122 RSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW----APPDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 122 ~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
++.-+|..||..||..- ..++.++.-|.+||+++|+ -+..++.-|+..|- -+.-|++|
T Consensus 3 KPp~SYa~LI~~AI~~s-p~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 64 (109)
T 2hfh_A 3 KPPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 64 (109)
T ss_dssp CCCCCHHHHHHHHHHTC-SSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHH---HHTCCBCC
T ss_pred CCCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhh---hhhhhhcC
Confidence 34457999999999864 3456799999999999986 36777777777653 23455554
No 69
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=91.27 E-value=0.32 Score=38.72 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC----CCccHHHHHHHHHHhhhhCCceeee
Q 022048 124 IVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW----APPDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 124 hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
.-+|..||..||..- ..++.++.-|.+||+++|+ -+...+.-|+..|- -+.-|++|
T Consensus 4 p~SY~~LI~~AI~~s-p~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~Kv 63 (97)
T 2hdc_A 4 PYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 63 (97)
T ss_dssp CCCHHHHHHHHHHTC-TTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHH---HHHCCEEE
T ss_pred CCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhh---hhhheeec
Confidence 457999999999874 3456899999999999996 25667777776653 23455555
No 70
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=91.16 E-value=0.35 Score=38.76 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC----CCccHHHHHHHHHHhhhhCCceeee
Q 022048 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW----APPDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 123 ~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
+.-+|..||..||... ..++.++.-|.+||+++|+ -+..++.-|+..|- -+.-|++|
T Consensus 4 Pp~SY~~LI~~AI~~s-p~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 64 (102)
T 1vtn_C 4 PPYSYISLITMAIQQA-PGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLS---FNDCFVKV 64 (102)
T ss_dssp CSSCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHH---HCTTEEEE
T ss_pred cCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhh---hccceEec
Confidence 3457999999999975 3456899999999999996 25666677776654 35667776
No 71
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=89.92 E-value=0.38 Score=38.48 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCC----CCccHHHHHHHHHHhhhhCCceeee
Q 022048 124 IVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYW----APPDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 124 hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
.-+|..||..||.... .+..++.-|.+||+++|. -+..++.-|+..|- -+.-|++|
T Consensus 4 p~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 63 (100)
T 1kq8_A 4 PYSYIALITMAIRDSA-GGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLS---LNDCFVKV 63 (100)
T ss_dssp ---CHHHHHHHHTTSS-SSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHH---HHTCCEEC
T ss_pred CCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHhCccccCCCCceecccchhee---hhheeeec
Confidence 3478999999999854 355899999999999997 25666777776653 23456655
No 72
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=89.14 E-value=0.49 Score=36.66 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC---------CccHHHHHHHHHHhhhhCCceeeeC
Q 022048 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA---------PPDFKRLLSAKLKYLAGTGKLVKIK 184 (303)
Q Consensus 123 ~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v---------p~nf~~lL~~~LKrlV~~GkLvkvK 184 (303)
..-+|..||..||....+ +..++..|..||+++|+. ....+.-|+..|- -+.-|++|.
T Consensus 6 p~~SY~~LI~~Ai~~sp~-~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 6 GNQSYAELISQAIESAPE-KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp BSCCHHHHHHHHHHHSTT-SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCCc-CCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 345799999999998554 348999999999999851 2356666766553 457777774
No 73
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=88.68 E-value=0.53 Score=38.21 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC---------CccHHHHHHHHHHhhhhCCceeeeC
Q 022048 122 RSIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA---------PPDFKRLLSAKLKYLAGTGKLVKIK 184 (303)
Q Consensus 122 ~~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v---------p~nf~~lL~~~LKrlV~~GkLvkvK 184 (303)
+..-+|..||..||....+ +..++..|..||+++|.. ...++.-|+..|- -+.-|++|.
T Consensus 24 kPpySY~~LI~~AI~~sp~-~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 24 WGNQSYAELISQAIESAPE-KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp TBSCCHHHHHHHHHHHSTT-SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhCCc-cCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 3445799999999998654 448999999999999851 2356777777553 456677774
No 74
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=87.45 E-value=1.2 Score=36.60 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC----C-----ccHHHHHHHHHHhhhhCCceeee
Q 022048 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA----P-----PDFKRLLSAKLKYLAGTGKLVKI 183 (303)
Q Consensus 123 ~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v----p-----~nf~~lL~~~LKrlV~~GkLvkv 183 (303)
+..+|..||..||..- ..+..++.-|..||+++|+. + ..++.-|+..|- -+.-|++|
T Consensus 12 Pp~SYa~LI~~AI~~s-p~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv 77 (117)
T 3coa_C 12 GNLSYADLITKAIESS-AEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRV 77 (117)
T ss_dssp BSCCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEE
T ss_pred CCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhccc
Confidence 4458999999999974 34568999999999999862 2 455666666553 45677776
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.04 E-value=1 Score=41.79 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 4 PKQKWTQEEEAALKAGVIKHGA--GKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 4 ~r~~WT~EE~~~L~~GV~k~G~--G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
|++.||.-|...|++.+.+||. ++|..|..|-. |..++...++.=+..|...
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~----L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT----LPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS----SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHH
Confidence 7889999999999999999994 79999999754 5689999999877766544
No 76
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=84.22 E-value=1.1 Score=38.49 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCC---------CccHHHHHHHHHHhhhhCCceeeeC------c-c
Q 022048 123 SIVRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWA---------PPDFKRLLSAKLKYLAGTGKLVKIK------R-K 186 (303)
Q Consensus 123 ~hP~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v---------p~nf~~lL~~~LKrlV~~GkLvkvK------~-s 186 (303)
..-+|..||..||..-. .+..++.-|..||+++|.. ...++.-|+..| --+.-|++|. | -
T Consensus 41 Pp~SYa~LI~~AI~sSp-~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNL---SLnk~F~Kv~r~~~GKG~~ 116 (150)
T 1e17_A 41 GNQSYAELISQAIESAP-EKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL---SLHSKFIKVHNEATGKSSW 116 (150)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHH---HSSTTEEEECCTTTSSSCE
T ss_pred CCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCchhccCCCCccccchhhccceee---eeeeeeEecCCCCCCCcce
Confidence 44689999999999853 4468999999999999962 134555566554 3456677764 2 3
Q ss_pred eecCCCC
Q 022048 187 YRIAPTL 193 (303)
Q Consensus 187 yKl~~~~ 193 (303)
+.|.|..
T Consensus 117 W~ldp~~ 123 (150)
T 1e17_A 117 WMLNPEG 123 (150)
T ss_dssp EEECTTC
T ss_pred EEECccc
Confidence 4666553
No 77
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=72.06 E-value=6.2 Score=30.32 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCcceecCC
Q 022048 126 RLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKRKYRIAP 191 (303)
Q Consensus 126 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~syKl~~ 191 (303)
+..++|.+-|..+.+ |..+..|+..+.=++ +.++..|..|+++|-|.+..+.|.|.+
T Consensus 5 s~~eIi~~IL~~i~~--~~~~t~La~~~~ls~-------~~~~~~l~~L~~~GLI~~~~~~~~LT~ 61 (95)
T 1r7j_A 5 SKLEIIQAILEACKS--GSPKTRIMYGANLSY-------ALTGRYIKMLMDLEIIRQEGKQYMLTK 61 (95)
T ss_dssp CHHHHHHHHHHHHTT--CBCHHHHHHHHTCCH-------HHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHhCcCH-------HHHHHHHHHHHHCCCeEEECCeeEECh
Confidence 356788888888874 388888888774332 678999999999999999998898865
No 78
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=68.54 E-value=1 Score=45.03 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 6 QKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..||.+|...+.+|+.+||. +|..|.+ +|++||--+|-.-|....+.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~------~lp~Ksv~e~V~yYY~WKKt 236 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ------MLPDKSIASLVKFYYSWKKT 236 (482)
T ss_dssp ------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH------HcCCCCHHHHHHHhcccccc
Confidence 47999999999999999998 9999986 36789998887665544444
No 79
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=63.56 E-value=12 Score=27.67 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeC---cceecCC
Q 022048 127 LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIK---RKYRIAP 191 (303)
Q Consensus 127 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK---~syKl~~ 191 (303)
.+..|++.|....+..+.+...|++-+. ++ ++-++.+|.+|...|.|..+. +.|.+.+
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC----CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 3567889999988888999999988874 44 367899999999999998864 4677755
No 80
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=59.34 E-value=11 Score=35.58 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhccCCCccccCCCCChHHHHHHHHhhccc
Q 022048 6 QKWTQEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVM 59 (303)
Q Consensus 6 ~~WT~EE~~~L~~GV~k~G~G~W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (303)
..||..+-..++.|+.+||...|..|..+ +.+.|..+++.=...+...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e------v~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD------VEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS------STTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH------hcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999999999983 3479999997655544433
No 81
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=53.62 E-value=32 Score=25.36 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCcceecCCC
Q 022048 142 GGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKRKYRIAPT 192 (303)
Q Consensus 142 ~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~syKl~~~ 192 (303)
.+.+...|+..+ .++ ...++.+|+.|.+.|.|...+|.|.|.+.
T Consensus 42 ~~~~~~eLa~~l----~is---~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTL----SLS---KKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 346666666555 343 35689999999999999987788988764
No 82
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=47.66 E-value=28 Score=26.39 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCc
Q 022048 127 LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKR 185 (303)
Q Consensus 127 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~ 185 (303)
-.++|..||..|.+...+...-|++ +.+++ ++-++..|-+|-.+|.|.++.+
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAk----kLg~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSN----RLKIN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHH----HTTCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHH----HHCCC---HHHHHHHHHHHHHCCCEecCCC
Confidence 3678999999999887777666555 44554 4668999999999999987754
No 83
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=47.55 E-value=53 Score=24.58 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeC---cceecCCC
Q 022048 128 DNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIK---RKYRIAPT 192 (303)
Q Consensus 128 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK---~syKl~~~ 192 (303)
+.-|++.|.......+.+...|++-+. ++ ++-++.+|.+|...|.|..+. +.|.+.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg----vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCc
Confidence 455888888766666788888887774 44 467999999999999998764 47777653
No 84
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=45.77 E-value=18 Score=27.10 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCCCCH---HHHHHHHHHhC
Q 022048 129 NLIMEAITTLKEPGGSNK---TTIAAYIEEKY 157 (303)
Q Consensus 129 ~MI~EAI~~Lker~GSS~---~AI~kyIe~~y 157 (303)
+-|-.||++...|.|.|. +.|+.||..||
T Consensus 51 eyinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 51 EYINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 335568899999999986 55889999887
No 85
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.59 E-value=15 Score=27.71 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhCCceee-eCcceecC
Q 022048 165 RLLSAKLKYLAGTGKLVK-IKRKYRIA 190 (303)
Q Consensus 165 ~lL~~~LKrlV~~GkLvk-vK~syKl~ 190 (303)
..|..-|-++|..|+|+. ..|.|||+
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 678999999999999997 58999984
No 86
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=42.86 E-value=56 Score=23.86 Aligned_cols=51 Identities=8% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeC
Q 022048 128 DNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIK 184 (303)
Q Consensus 128 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK 184 (303)
.-.|+..| .+..|.+...|.+.|.+...+. ...++..|++|+..|-|.+..
T Consensus 10 q~~iL~~l---~~~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 10 EAIVLAYL---YDNEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHHH---TTCTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH---HHcCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEEEe
Confidence 33455555 4457789999988887777764 356888999999999998753
No 87
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=42.07 E-value=15 Score=28.31 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCcce-ecC
Q 022048 127 LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKRKY-RIA 190 (303)
Q Consensus 127 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~sy-Kl~ 190 (303)
..+.|++++....++- +-.-|++ .-.+| ++-|+..|++|-..|+|+.++.+| .|.
T Consensus 20 ~eekVLe~LkeaG~Pl--kageIae----~~Gvd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPV--KLAQLVK----ECQAP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCE--EHHHHHH----HHTSC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCCC--CHHHHHH----HHCCC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 3678999998877763 3333333 33444 578999999999999999998754 443
No 88
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=40.36 E-value=43 Score=26.75 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHhCC
Q 022048 125 VRLDNLIMEAITTLKEPGG-SNKTTIAAYIEEKYW 158 (303)
Q Consensus 125 P~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y~ 158 (303)
.....+|.+||..+.+.+| .+..+|-.||..+|+
T Consensus 20 ~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~P 54 (105)
T 2kpm_A 20 AFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQP 54 (105)
T ss_dssp CCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCc
Confidence 3568999999999998777 799999999999886
No 89
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=38.61 E-value=72 Score=22.46 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeC-cceec
Q 022048 127 LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIK-RKYRI 189 (303)
Q Consensus 127 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK-~syKl 189 (303)
...-|++.|.. +....|...|++.+ .++ +..+...|+.|.+.|.|+..+ |.|.|
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~~l----gls---r~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVKKC----QVP---KKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHHHH----CSC---HHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCcEecCCCceEee
Confidence 35567787765 22346777766554 555 577888999999999988764 67776
No 90
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=38.24 E-value=76 Score=23.15 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=33.3
Q ss_pred hcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCc----ceecCC
Q 022048 137 TLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKR----KYRIAP 191 (303)
Q Consensus 137 ~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~----syKl~~ 191 (303)
.|.+ .+.+...|+..+ .++ ...++.+|+.|.+.|-|...+. .|.+.+
T Consensus 31 ~L~~-~~~~~~ela~~l----~is---~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 31 MLHN-QELSVGELCAKL----QLS---QSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp HTTT-SCEEHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred HHhc-CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 3444 567888888777 343 3578999999999999987642 355544
No 91
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=37.86 E-value=0.79 Score=30.52 Aligned_cols=15 Identities=67% Similarity=0.749 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 022048 254 EAEAAVAEAEEAARE 268 (303)
Q Consensus 254 EAE~~~~~AeeA~~E 268 (303)
|||+++-+||+|.++
T Consensus 19 dAe~a~~~AEqAsKd 33 (38)
T 1psm_A 19 DAENASKEAEEAAKE 33 (38)
T ss_dssp TTTHHHHHTTTTTCT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 92
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=35.57 E-value=1.4e+02 Score=22.53 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCc
Q 022048 125 VRLDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKR 185 (303)
Q Consensus 125 P~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~ 185 (303)
....-||+..|....+ .|.+...|++-+ .++ ..-++..|++|...|-|..+++
T Consensus 19 t~~q~~Vl~~I~~~g~-~gi~qkeLa~~~----~l~---~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGN-KGIWSRDVRYKS----NLP---LTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp CSSHHHHHHHHHHHCT-TCEEHHHHHHHT----TCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred CHHHHHHHHHHHHcCC-CCcCHHHHHHHH----CCC---HHHHHHHHHHHHHCCCEEEecC
Confidence 4468899999997554 488888887665 343 3668999999999999986654
No 93
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=33.66 E-value=66 Score=24.87 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHhCC-C-CccH
Q 022048 126 RLDNLIMEAITTLKEPGG-SNKTTIAAYIEEKYW-A-PPDF 163 (303)
Q Consensus 126 ~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y~-v-p~nf 163 (303)
...++|.+||..+.+.+| .+..+|-.||..+|+ . |-|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnY 48 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNW 48 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTT
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCcccc
Confidence 468999999999998777 799999999999986 2 5444
No 94
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=32.81 E-value=1e+02 Score=21.74 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeC
Q 022048 127 LDNLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIK 184 (303)
Q Consensus 127 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK 184 (303)
....|+.+|.. ..+.+...|...+.....+. ..-+...|++|++.|-|.+.+
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTSTWS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCCcc---HHHHHHHHHHHHHCCCeEEEe
Confidence 35567777766 35789999999997653332 356889999999999998765
No 95
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=31.85 E-value=97 Score=22.12 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeC
Q 022048 130 LIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIK 184 (303)
Q Consensus 130 MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK 184 (303)
-|+..| .+..+.+...|+..+ .++ ...++.+|+.|...|-|...+
T Consensus 28 ~il~~l---~~~~~~s~~ela~~l----~is---~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 28 LILCML---SGSPGTSAGELTRIT----GLS---ASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHH---TTCCSEEHHHHHHHH----CCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH---HhCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEEe
Confidence 344444 445567888887776 333 367899999999999998764
No 96
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=30.85 E-value=76 Score=24.61 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCcceecCC
Q 022048 126 RLDNLIMEAITTLK-------EPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKRKYRIAP 191 (303)
Q Consensus 126 ~y~~MI~EAI~~Lk-------er~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~syKl~~ 191 (303)
.|..+.-+.+..|. ++-|.++.-+......++ + .+++..-|..|++.|.|+...+-..++.
T Consensus 63 ~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~--~---~~~~~~ll~~l~~~g~l~~~~~~v~Lp~ 130 (135)
T 2v9v_A 63 RYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL--P---ARVYQALLEEWSREGRLQLAANTVALAG 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS--C---HHHHHHHHHHHHHTTSEEECSSEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC--C---HHHHHHHHHHHHHCCCEEecCCEEECCC
Confidence 35666666666666 789999999988774222 2 4667788899999999999998888854
No 97
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.74 E-value=26 Score=25.05 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.5
Q ss_pred HhcCCCCCCCHHHHHHHHHHhC---CCCccHHHHHHHHHHhh
Q 022048 136 TTLKEPGGSNKTTIAAYIEEKY---WAPPDFKRLLSAKLKYL 174 (303)
Q Consensus 136 ~~Lker~GSS~~AI~kyIe~~y---~vp~nf~~lL~~~LKrl 174 (303)
..+.++-|.|..+|..++..+- .+.+..+..|...++.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3445567999999999999876 77666666666666544
No 98
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=28.56 E-value=48 Score=25.31 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCc
Q 022048 129 NLIMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKR 185 (303)
Q Consensus 129 ~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~ 185 (303)
.+...-|.-|+ ++|.+...|++-+ .++ +..++.+|.+|...|.|++..+
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~L----giS---k~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQL----NME---KREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHHS----SSC---HHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEeCCC
Confidence 45556666777 5777777776655 444 3678999999999999998765
No 99
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=26.95 E-value=99 Score=23.73 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=38.0
Q ss_pred HHHHHHHHhcC-CCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeeeCcceec
Q 022048 129 NLIMEAITTLK-EPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKIKRKYRI 189 (303)
Q Consensus 129 ~MI~EAI~~Lk-er~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkvK~syKl 189 (303)
.-++.+|..+. ...+.+...|++.+. ++ +..++..|++|...|-|.+..+.|.|
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~----is---~~tv~~~l~~Le~~Gli~r~~~~~~L 70 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLK----IA---PSSVFEEVSHLEEKGLVKKKEDGVWI 70 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhC----CC---hHHHHHHHHHHHHCCCEEecCCeEEE
Confidence 34566676653 445678888888763 33 46789999999999999876544554
No 100
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.60 E-value=1.4e+02 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhCCceeeeCcc
Q 022048 165 RLLSAKLKYLAGTGKLVKIKRK 186 (303)
Q Consensus 165 ~lL~~~LKrlV~~GkLvkvK~s 186 (303)
.-+...|+.|..+|.|.++.|.
T Consensus 39 ~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 39 YQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHCCcEEecCCC
Confidence 4488999999999999988553
No 101
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=25.44 E-value=61 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHhhhhCCce----eeeCcceecCCCC
Q 022048 168 SAKLKYLAGTGKL----VKIKRKYRIAPTL 193 (303)
Q Consensus 168 ~~~LKrlV~~GkL----vkvK~syKl~~~~ 193 (303)
...|.+.+.+|+| +|+.++|++.++.
T Consensus 18 ~~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a 47 (52)
T 2og0_A 18 LETVRRWVRESRIFPPPVKDGREYLFHESA 47 (52)
T ss_dssp HHHHHHHHHTTCEESCCEEETTEEEEETTC
T ss_pred HHHHHHHHHCCCCCCcccccCCEEEEcccc
Confidence 4567788889999 8888999997654
No 102
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=24.01 E-value=1.1e+02 Score=26.42 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccHHHHHHHHHHhhhhCCceeee-CcceecCCC
Q 022048 131 IMEAITTLKEPGGSNKTTIAAYIEEKYWAPPDFKRLLSAKLKYLAGTGKLVKI-KRKYRIAPT 192 (303)
Q Consensus 131 I~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlV~~GkLvkv-K~syKl~~~ 192 (303)
|+++|.. ...+.+...|...+ .+| +.-+...|+.|++.|-|.+. .+.|+|.+.
T Consensus 13 iL~~l~~--~~~~~~~~ela~~~----gl~---~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~ 66 (249)
T 1mkm_A 13 ILDFIVK--NPGDVSVSEIAEKF----NMS---VSNAYKYMVVLEEKGFVLRKKDKRYVPGYK 66 (249)
T ss_dssp HHHHHHH--CSSCBCHHHHHHHT----TCC---HHHHHHHHHHHHHTTSEEECTTSCEEECTH
T ss_pred HHHHHHh--CCCCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCcEEECCCCcEEECHH
Confidence 5666654 23467877776655 444 46678889999999999998 578999763
Done!