BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022049
         (303 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GW20|Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis
           thaliana GN=At5g03900 PE=1 SV=2
          Length = 523

 Score =  361 bits (926), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 187/306 (61%), Positives = 235/306 (76%), Gaps = 11/306 (3%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDI 298
           APYLD+
Sbjct: 298 APYLDV 303


>sp|Q8FDG5|PRIM_ECOL6 DNA primase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
           / UPEC) GN=dnaG PE=3 SV=1
          Length = 581

 Score = 33.5 bits (75), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|P0ABS7|PRIM_SHIFL DNA primase OS=Shigella flexneri GN=dnaG PE=3 SV=1
          Length = 581

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|P0ABS5|PRIM_ECOLI DNA primase OS=Escherichia coli (strain K12) GN=dnaG PE=1 SV=1
          Length = 581

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|P0ABS6|PRIM_ECO57 DNA primase OS=Escherichia coli O157:H7 GN=dnaG PE=3 SV=1
          Length = 581

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|Q833N6|MURC_ENTFA UDP-N-acetylmuramate--L-alanine ligase OS=Enterococcus faecalis
           (strain ATCC 700802 / V583) GN=murC PE=3 SV=1
          Length = 445

 Score = 33.1 bits (74), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 229 WDPYYYRRRRVQTDDDDKKMNFIKSVF-SFVFGEGDPNQGIEEKRWKLIGEYIASNGGVV 287
           + P+ + R     D+  + ++    VF   +FG     QG  E R + +GE I   G V+
Sbjct: 345 FQPHTFTRTIALMDEFAEALDLADEVFLCNIFGSARETQG--EVRIEDLGEKIQKGGQVI 402

Query: 288 TAEELAPYLDIDRTMV 303
           T + ++P LD +  +V
Sbjct: 403 TEDNVSPLLDFENAVV 418


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,706,249
Number of Sequences: 539616
Number of extensions: 4822452
Number of successful extensions: 12320
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 12314
Number of HSP's gapped (non-prelim): 31
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)