Query 022049
Match_columns 303
No_of_seqs 75 out of 77
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jt1_A PEFI protein; solution 95.7 0.016 5.6E-07 44.2 5.3 49 82-132 4-57 (77)
2 2heo_A Z-DNA binding protein 1 95.6 0.027 9.2E-07 41.0 6.0 51 83-135 11-61 (67)
3 3f2g_A Alkylmercury lyase; MER 95.1 0.019 6.6E-07 52.0 4.8 59 81-146 21-79 (220)
4 3i71_A Ethanolamine utilizatio 95.1 0.027 9.3E-07 42.6 4.8 44 85-130 6-49 (68)
5 2lnb_A Z-DNA-binding protein 1 94.0 0.07 2.4E-06 41.9 5.0 44 82-125 19-62 (80)
6 1q1h_A TFE, transcription fact 93.2 0.23 8E-06 37.9 6.6 58 82-141 18-80 (110)
7 3r0a_A Putative transcriptiona 93.1 0.58 2E-05 37.1 9.0 84 82-169 26-115 (123)
8 3cuq_A Vacuolar-sorting protei 92.7 0.14 4.9E-06 46.6 5.5 71 73-145 144-216 (234)
9 3cuq_B Vacuolar protein-sortin 91.9 0.38 1.3E-05 42.9 7.2 69 74-145 145-214 (218)
10 1xmk_A Double-stranded RNA-spe 91.7 0.16 5.4E-06 39.1 3.9 61 81-144 10-71 (79)
11 1qbj_A Protein (double-strande 91.6 0.16 5.4E-06 38.9 3.8 50 80-131 8-59 (81)
12 2htj_A P fimbrial regulatory p 91.6 0.23 7.9E-06 36.4 4.6 45 84-131 2-46 (81)
13 2fu4_A Ferric uptake regulatio 91.0 0.45 1.5E-05 34.6 5.6 60 81-140 16-81 (83)
14 1u5t_A Appears to BE functiona 90.9 0.22 7.4E-06 45.4 4.6 61 84-145 169-229 (233)
15 1qgp_A Protein (double strande 90.1 0.46 1.6E-05 35.6 5.0 46 80-125 12-59 (77)
16 1xn7_A Hypothetical protein YH 89.7 0.45 1.5E-05 36.2 4.7 43 82-125 2-44 (78)
17 1oyi_A Double-stranded RNA-bin 89.6 0.38 1.3E-05 37.5 4.4 43 81-125 16-58 (82)
18 2k02_A Ferrous iron transport 89.5 0.45 1.5E-05 37.2 4.8 43 82-125 2-44 (87)
19 2oqg_A Possible transcriptiona 87.9 5.5 0.00019 29.8 9.8 59 79-141 18-77 (114)
20 3cuo_A Uncharacterized HTH-typ 87.8 1.1 3.7E-05 32.7 5.7 60 80-142 22-82 (99)
21 3f6o_A Probable transcriptiona 86.9 3.6 0.00012 31.9 8.5 61 79-143 15-76 (118)
22 1r1u_A CZRA, repressor protein 86.8 2.1 7.2E-05 32.5 7.0 59 79-141 23-81 (106)
23 1y0u_A Arsenical resistance op 86.7 1.1 3.8E-05 33.4 5.2 54 80-141 29-82 (96)
24 3jth_A Transcription activator 86.1 1.1 3.7E-05 33.3 4.9 58 80-141 21-79 (98)
25 2kko_A Possible transcriptiona 85.9 1.7 5.7E-05 33.4 6.1 57 81-141 24-80 (108)
26 3b73_A PHIH1 repressor-like pr 84.8 2.1 7.1E-05 34.4 6.3 64 83-151 14-79 (111)
27 2xvc_A ESCRT-III, SSO0910; cel 82.8 2 6.9E-05 32.0 4.9 46 80-125 8-53 (59)
28 2v9v_A Selenocysteine-specific 82.7 8.1 0.00028 30.1 8.9 63 84-148 4-66 (135)
29 2l0k_A Stage III sporulation p 82.0 0.99 3.4E-05 35.4 3.2 38 80-119 5-42 (93)
30 1sfx_A Conserved hypothetical 80.9 13 0.00043 26.8 8.8 57 82-141 20-78 (109)
31 2jsc_A Transcriptional regulat 80.8 4.2 0.00014 31.6 6.5 57 81-141 20-76 (118)
32 1ub9_A Hypothetical protein PH 80.5 13 0.00044 26.8 8.7 63 80-145 14-80 (100)
33 3f6v_A Possible transcriptiona 79.5 4.7 0.00016 33.3 6.7 59 79-141 55-113 (151)
34 2cyy_A Putative HTH-type trans 79.4 2.4 8.2E-05 34.0 4.8 42 83-125 8-49 (151)
35 3vp5_A Transcriptional regulat 78.6 1.2 4.2E-05 35.7 2.8 37 77-113 7-48 (189)
36 1r1t_A Transcriptional repress 77.9 6.4 0.00022 31.1 6.8 57 81-141 45-101 (122)
37 2pn6_A ST1022, 150AA long hypo 77.4 2.4 8.3E-05 33.7 4.2 42 83-125 4-45 (150)
38 2x4h_A Hypothetical protein SS 77.3 19 0.00065 27.7 9.3 47 85-133 16-65 (139)
39 1u5t_B Defective in vacuolar p 76.9 2.8 9.6E-05 36.0 4.7 62 77-139 93-161 (169)
40 2w25_A Probable transcriptiona 76.8 3.2 0.00011 33.2 4.8 41 83-124 8-48 (150)
41 2e1c_A Putative HTH-type trans 76.6 3 0.0001 34.9 4.8 43 82-125 27-69 (171)
42 2zkz_A Transcriptional repress 76.5 4.7 0.00016 30.4 5.4 58 80-141 25-82 (99)
43 3h5t_A Transcriptional regulat 76.4 3.9 0.00013 36.3 5.7 74 92-165 4-99 (366)
44 2cg4_A Regulatory protein ASNC 76.3 3.2 0.00011 33.2 4.7 42 83-125 9-50 (152)
45 3bqz_B HTH-type transcriptiona 76.0 1.4 4.7E-05 34.4 2.4 34 81-114 1-39 (194)
46 2d1h_A ST1889, 109AA long hypo 76.0 4.6 0.00016 29.3 5.1 47 84-132 23-69 (109)
47 4a0z_A Transcription factor FA 75.8 2.6 8.9E-05 36.5 4.3 40 83-123 13-52 (190)
48 2dbb_A Putative HTH-type trans 75.4 3.8 0.00013 32.6 4.9 42 83-125 10-51 (151)
49 1sfu_A 34L protein; protein/Z- 75.1 4.6 0.00016 31.1 5.0 51 81-133 11-63 (75)
50 3pqk_A Biofilm growth-associat 75.1 3.2 0.00011 31.0 4.1 60 80-143 21-81 (102)
51 2p5k_A Arginine repressor; DNA 74.9 9.3 0.00032 25.9 6.2 53 83-140 5-63 (64)
52 2o03_A Probable zinc uptake re 74.9 8 0.00027 30.7 6.7 61 81-141 10-75 (131)
53 1i1g_A Transcriptional regulat 74.6 3.8 0.00013 32.0 4.6 42 83-125 5-46 (141)
54 2lkp_A Transcriptional regulat 74.3 11 0.00037 28.6 7.1 58 82-143 32-89 (119)
55 4hku_A LMO2814 protein, TETR t 74.1 1.4 4.9E-05 34.9 2.0 32 81-112 6-42 (178)
56 2qwt_A Transcriptional regulat 74.1 1.8 6.1E-05 34.7 2.6 32 83-114 14-49 (196)
57 2o0y_A Transcriptional regulat 74.0 3.6 0.00012 36.3 4.8 53 85-141 23-78 (260)
58 3nrg_A TETR family transcripti 73.9 1.6 5.3E-05 34.7 2.2 35 78-112 9-48 (217)
59 2cfx_A HTH-type transcriptiona 73.8 4.4 0.00015 32.3 4.9 42 83-125 6-47 (144)
60 2eh3_A Transcriptional regulat 73.6 1.8 6E-05 34.0 2.4 33 82-114 2-39 (179)
61 1ku9_A Hypothetical protein MJ 73.2 27 0.00093 26.3 10.1 60 83-144 27-89 (152)
62 1p6r_A Penicillinase repressor 73.1 7.9 0.00027 27.8 5.7 58 82-142 9-70 (82)
63 2ia0_A Putative HTH-type trans 73.0 4.3 0.00015 33.9 4.8 43 82-125 17-59 (171)
64 3kkc_A TETR family transcripti 72.6 2.1 7.2E-05 33.0 2.6 32 82-113 12-48 (177)
65 1mkm_A ICLR transcriptional re 72.5 22 0.00074 30.9 9.4 52 86-141 12-63 (249)
66 2p5v_A Transcriptional regulat 72.1 4.9 0.00017 32.6 4.8 42 83-125 11-52 (162)
67 3i4p_A Transcriptional regulat 72.0 3.9 0.00013 33.5 4.2 42 83-125 4-45 (162)
68 1u2w_A CADC repressor, cadmium 71.7 12 0.00041 29.2 6.8 56 82-140 42-98 (122)
69 3k2z_A LEXA repressor; winged 71.6 4 0.00014 34.3 4.4 44 86-131 13-56 (196)
70 2k9l_A RNA polymerase sigma fa 71.6 2.9 0.0001 31.2 3.1 40 83-122 33-73 (76)
71 2q24_A Putative TETR family tr 71.2 2.2 7.6E-05 33.8 2.5 32 83-114 16-51 (194)
72 3vpr_A Transcriptional regulat 70.9 2.2 7.7E-05 33.6 2.5 33 82-114 3-40 (190)
73 3ppb_A Putative TETR family tr 70.9 2.4 8.1E-05 32.8 2.6 34 81-114 8-46 (195)
74 2dk8_A DNA-directed RNA polyme 70.7 13 0.00044 28.9 6.6 60 80-141 12-73 (81)
75 3cdl_A Transcriptional regulat 69.8 2.8 9.5E-05 33.7 2.8 36 79-114 6-46 (203)
76 3bdd_A Regulatory protein MARR 69.3 16 0.00056 27.5 7.0 47 83-132 32-78 (142)
77 3nnr_A Transcriptional regulat 68.6 2.4 8.1E-05 34.5 2.2 34 80-113 3-41 (228)
78 2fe3_A Peroxide operon regulat 68.3 11 0.00038 30.4 6.2 62 80-141 20-86 (145)
79 2nnn_A Probable transcriptiona 68.2 31 0.0011 25.8 8.4 47 83-132 39-85 (140)
80 3jsj_A Putative TETR-family tr 68.1 2.7 9.2E-05 32.9 2.4 34 81-114 8-45 (190)
81 3mwm_A ZUR, putative metal upt 68.0 15 0.00052 29.5 6.9 62 81-142 13-79 (139)
82 3mq0_A Transcriptional repress 67.9 4 0.00014 36.5 3.7 52 86-141 34-85 (275)
83 3bro_A Transcriptional regulat 67.0 7.4 0.00025 29.5 4.6 47 83-131 35-82 (141)
84 2zcm_A Biofilm operon icaabcd 66.9 2.9 9.8E-05 32.9 2.3 30 85-114 14-44 (192)
85 2xrn_A HTH-type transcriptiona 66.7 6.3 0.00021 34.3 4.6 53 86-141 10-62 (241)
86 2y75_A HTH-type transcriptiona 66.6 7.6 0.00026 30.3 4.7 45 86-132 13-59 (129)
87 3tgn_A ADC operon repressor AD 66.3 6.9 0.00024 30.0 4.3 41 83-125 39-79 (146)
88 2rek_A Putative TETR-family tr 65.6 2.5 8.5E-05 33.5 1.7 32 83-114 17-52 (199)
89 1r7j_A Conserved hypothetical 65.3 5.4 0.00019 30.6 3.5 48 86-136 12-64 (95)
90 3f1b_A TETR-like transcription 65.3 3.4 0.00012 32.2 2.5 32 83-114 15-51 (203)
91 1z91_A Organic hydroperoxide r 65.1 11 0.00039 28.7 5.4 47 83-132 41-87 (147)
92 3fm5_A Transcriptional regulat 65.0 8.2 0.00028 29.9 4.6 48 83-132 40-87 (150)
93 3gzi_A Transcriptional regulat 64.9 3.4 0.00012 32.9 2.4 34 81-114 16-54 (218)
94 2id6_A Transcriptional regulat 64.8 2 6.9E-05 34.4 1.0 35 79-113 2-41 (202)
95 3qkx_A Uncharacterized HTH-typ 64.6 4.2 0.00014 31.3 2.8 32 82-113 8-44 (188)
96 3dew_A Transcriptional regulat 64.5 3.1 0.00011 32.3 2.1 33 82-114 8-45 (206)
97 4a6d_A Hydroxyindole O-methylt 64.2 15 0.0005 33.5 6.8 72 76-149 22-94 (353)
98 2eth_A Transcriptional regulat 64.1 48 0.0017 25.6 9.1 47 83-132 45-91 (154)
99 1j5y_A Transcriptional regulat 64.1 8.2 0.00028 32.3 4.7 48 84-132 23-70 (187)
100 2gxg_A 146AA long hypothetical 64.0 12 0.00041 28.5 5.3 46 83-132 38-83 (146)
101 2xzm_8 RPS25E,; ribosome, tran 64.0 5.9 0.0002 34.0 3.8 62 79-140 45-106 (143)
102 2a61_A Transcriptional regulat 63.9 45 0.0015 25.2 9.1 47 83-132 34-80 (145)
103 3lhq_A Acrab operon repressor 63.7 3.6 0.00012 32.3 2.3 32 83-114 15-51 (220)
104 2pij_A Prophage PFL 6 CRO; tra 63.6 12 0.00042 25.4 4.8 49 85-141 4-54 (67)
105 3f3x_A Transcriptional regulat 63.5 37 0.0013 25.8 8.1 46 84-133 39-84 (144)
106 3lwj_A Putative TETR-family tr 63.3 3.7 0.00013 32.2 2.3 33 81-113 11-48 (202)
107 1bja_A Transcription regulator 63.3 7.3 0.00025 30.9 4.0 43 85-130 19-62 (95)
108 3bj6_A Transcriptional regulat 63.2 9.9 0.00034 29.3 4.7 47 83-132 41-87 (152)
109 2pg4_A Uncharacterized protein 63.2 6.6 0.00022 29.0 3.6 43 86-130 19-62 (95)
110 3kz9_A SMCR; transcriptional r 63.1 4.2 0.00014 31.7 2.6 33 82-114 17-54 (206)
111 1s3j_A YUSO protein; structura 63.1 49 0.0017 25.3 9.1 46 84-132 39-84 (155)
112 3nxc_A HTH-type protein SLMA; 63.1 3.1 0.00011 32.8 1.8 34 81-114 23-62 (212)
113 2dk5_A DNA-directed RNA polyme 63.0 11 0.00037 29.0 4.9 46 83-130 21-67 (91)
114 3eco_A MEPR; mutlidrug efflux 63.0 11 0.00037 28.7 4.9 48 83-132 32-80 (139)
115 3he0_A Transcriptional regulat 62.8 4.3 0.00015 31.6 2.6 33 82-114 11-48 (196)
116 2gmg_A Hypothetical protein PF 62.8 7.5 0.00025 31.7 4.0 50 81-132 10-66 (105)
117 1lva_A Selenocysteine-specific 62.8 34 0.0011 30.3 8.7 60 84-145 4-63 (258)
118 2rdp_A Putative transcriptiona 62.7 49 0.0017 25.2 9.3 47 83-132 43-89 (150)
119 2fd5_A Transcriptional regulat 62.4 4 0.00014 31.8 2.3 30 82-111 7-41 (180)
120 2hr3_A Probable transcriptiona 61.9 11 0.00037 28.8 4.7 47 84-132 37-83 (147)
121 3col_A Putative transcription 61.8 3.7 0.00013 31.8 2.0 33 82-114 10-47 (196)
122 3nrv_A Putative transcriptiona 60.9 13 0.00043 28.6 5.0 46 84-132 42-87 (148)
123 3dpj_A Transcription regulator 60.8 4.5 0.00015 31.6 2.4 33 82-114 8-45 (194)
124 2fbi_A Probable transcriptiona 60.8 50 0.0017 24.7 9.2 46 83-131 37-82 (142)
125 3deu_A Transcriptional regulat 60.7 11 0.00038 30.3 4.8 48 83-132 54-101 (166)
126 1jhf_A LEXA repressor; LEXA SO 60.6 13 0.00045 30.9 5.4 48 83-132 11-59 (202)
127 3mvp_A TETR/ACRR transcription 60.3 4 0.00014 32.2 2.0 34 81-114 25-63 (217)
128 1sgm_A Putative HTH-type trans 60.1 4.9 0.00017 31.0 2.5 31 82-112 6-41 (191)
129 1t33_A Putative transcriptiona 60.1 3.4 0.00012 33.1 1.6 33 82-114 12-48 (224)
130 3r4k_A Transcriptional regulat 59.9 3.8 0.00013 36.2 1.9 51 87-141 11-62 (260)
131 3rd3_A Probable transcriptiona 59.7 4.8 0.00016 31.2 2.3 34 81-114 9-47 (197)
132 2xig_A Ferric uptake regulatio 59.6 23 0.00077 28.9 6.5 62 80-141 25-91 (150)
133 3f0c_A TETR-molecule A, transc 59.4 5.3 0.00018 31.7 2.6 33 81-113 10-47 (216)
134 2xvc_A ESCRT-III, SSO0910; cel 59.4 3.1 0.00011 31.0 1.1 26 274-299 13-38 (59)
135 1mzb_A Ferric uptake regulatio 59.4 19 0.00064 28.7 5.9 61 81-141 17-83 (136)
136 3mkl_A HTH-type transcriptiona 59.1 11 0.00038 28.9 4.3 42 77-118 2-44 (120)
137 2ek5_A Predicted transcription 58.8 65 0.0022 25.6 9.0 60 85-147 11-75 (129)
138 2rae_A Transcriptional regulat 58.7 5.1 0.00017 31.7 2.4 33 81-113 16-53 (207)
139 3knw_A Putative transcriptiona 58.6 5.1 0.00017 31.6 2.3 34 81-114 13-51 (212)
140 2fbh_A Transcriptional regulat 58.5 13 0.00044 28.2 4.6 48 83-132 38-85 (146)
141 2qtq_A Transcriptional regulat 58.4 5.2 0.00018 31.5 2.3 34 80-113 14-52 (213)
142 1lj9_A Transcriptional regulat 58.4 21 0.00072 27.1 5.8 46 84-132 31-76 (144)
143 3him_A Probable transcriptiona 58.2 5.2 0.00018 31.3 2.3 32 80-111 14-50 (211)
144 3on2_A Probable transcriptiona 58.2 4.2 0.00014 31.5 1.8 32 81-112 11-47 (199)
145 2dg7_A Putative transcriptiona 57.9 5.5 0.00019 31.4 2.4 34 81-114 6-44 (195)
146 3by6_A Predicted transcription 57.9 36 0.0012 27.0 7.3 46 94-142 31-77 (126)
147 2kif_A O6-methylguanine-DNA me 57.9 12 0.0004 30.2 4.4 57 82-138 3-65 (108)
148 2iu5_A DHAS, YCEG, HTH-type dh 57.8 5.2 0.00018 31.7 2.3 30 82-111 13-47 (195)
149 3egq_A TETR family transcripti 57.7 4.8 0.00016 31.0 2.0 32 82-113 4-40 (170)
150 3dcf_A Transcriptional regulat 57.6 6.5 0.00022 31.0 2.8 34 81-114 30-68 (218)
151 3s5r_A Transcriptional regulat 57.5 6.4 0.00022 31.1 2.8 33 82-114 10-47 (216)
152 3qqa_A CMER; alpha-helical, he 57.3 5.5 0.00019 31.5 2.3 30 82-111 19-53 (216)
153 2yve_A Transcriptional regulat 57.3 6.6 0.00023 31.1 2.8 32 83-114 5-41 (185)
154 1tc3_C Protein (TC3 transposas 57.2 15 0.00051 22.6 4.0 40 78-120 5-44 (51)
155 2h09_A Transcriptional regulat 57.2 68 0.0023 25.1 8.8 55 86-144 44-98 (155)
156 3q0w_A HTH-type transcriptiona 57.0 5.3 0.00018 32.9 2.3 34 81-114 43-81 (236)
157 1on2_A Transcriptional regulat 57.0 65 0.0022 24.8 8.8 38 95-134 20-57 (142)
158 2zb9_A Putative transcriptiona 57.0 5.5 0.00019 31.8 2.3 33 82-114 23-60 (214)
159 3on4_A Transcriptional regulat 56.2 5.9 0.0002 30.5 2.3 32 82-113 10-46 (191)
160 3rh2_A Hypothetical TETR-like 56.1 5.8 0.0002 31.7 2.3 33 81-113 2-39 (212)
161 3bru_A Regulatory protein, TET 56.1 7.1 0.00024 31.1 2.8 34 81-114 29-67 (222)
162 2d6y_A Putative TETR family re 56.0 5.8 0.0002 31.9 2.3 32 82-113 8-44 (202)
163 3cwr_A Transcriptional regulat 56.0 5.4 0.00018 31.1 2.1 34 81-114 16-54 (208)
164 3to7_A Histone acetyltransfera 56.0 8.9 0.0003 36.0 3.8 39 84-122 195-233 (276)
165 2dg8_A Putative TETR-family tr 56.0 5.4 0.00018 31.6 2.1 32 82-113 9-45 (193)
166 1pb6_A Hypothetical transcript 55.9 6.3 0.00021 31.0 2.5 34 81-114 17-55 (212)
167 3e7q_A Transcriptional regulat 55.8 3.1 0.00011 32.7 0.7 33 81-113 13-50 (215)
168 3g3z_A NMB1585, transcriptiona 55.7 13 0.00046 28.4 4.3 47 83-132 32-78 (145)
169 2fq4_A Transcriptional regulat 55.4 6.2 0.00021 31.3 2.4 45 81-125 11-67 (192)
170 1rkt_A Protein YFIR; transcrip 54.8 6.2 0.00021 31.5 2.3 32 82-113 12-48 (205)
171 3bpv_A Transcriptional regulat 54.8 64 0.0022 24.1 8.2 46 83-131 30-75 (138)
172 2nyx_A Probable transcriptiona 54.8 14 0.00049 29.4 4.5 46 83-131 46-91 (168)
173 3qbm_A TETR transcriptional re 54.6 6.6 0.00022 30.5 2.3 32 83-114 8-44 (199)
174 3frq_A Repressor protein MPHR( 54.5 3.4 0.00012 32.6 0.7 30 84-113 10-44 (195)
175 3bja_A Transcriptional regulat 54.4 56 0.0019 24.3 7.5 47 83-132 34-80 (139)
176 3b81_A Transcriptional regulat 54.4 7.3 0.00025 30.4 2.6 33 81-113 10-47 (203)
177 2w57_A Ferric uptake regulatio 54.4 27 0.00091 28.5 6.1 62 80-141 15-82 (150)
178 3cdh_A Transcriptional regulat 54.3 56 0.0019 25.2 7.7 47 83-132 44-90 (155)
179 3neu_A LIN1836 protein; struct 54.3 76 0.0026 24.8 9.0 57 83-142 18-79 (125)
180 3kjx_A Transcriptional regulat 54.3 3.7 0.00013 36.0 1.0 69 92-165 5-94 (344)
181 1vi0_A Transcriptional regulat 54.2 5.7 0.0002 32.1 2.0 32 82-113 8-44 (206)
182 1bia_A BIRA bifunctional prote 54.2 21 0.00072 32.6 6.0 57 82-142 5-61 (321)
183 1zk8_A Transcriptional regulat 54.1 6.5 0.00022 30.5 2.2 32 82-113 8-44 (183)
184 2g7s_A Transcriptional regulat 54.0 6.8 0.00023 30.2 2.3 33 82-114 8-45 (194)
185 2b0l_A GTP-sensing transcripti 53.9 5.6 0.00019 30.9 1.8 47 84-133 30-77 (102)
186 1w7p_D VPS36P, YLR417W; ESCRT- 53.9 14 0.00047 37.6 5.1 62 81-145 493-561 (566)
187 3anp_C Transcriptional repress 53.9 6.6 0.00023 31.2 2.3 32 82-113 9-45 (204)
188 2g7u_A Transcriptional regulat 53.8 19 0.00064 31.5 5.4 47 84-132 13-62 (257)
189 2bv6_A MGRA, HTH-type transcri 53.8 19 0.00064 27.4 4.8 48 83-133 38-85 (142)
190 3o60_A LIN0861 protein; PSI, M 53.8 5.3 0.00018 32.6 1.7 33 81-113 18-56 (185)
191 3hta_A EBRA repressor; TETR fa 53.7 5.9 0.0002 32.3 2.0 32 83-114 29-65 (217)
192 3npi_A TETR family regulatory 53.6 3.6 0.00012 34.2 0.7 33 82-114 18-55 (251)
193 2heo_A Z-DNA binding protein 1 53.4 3.9 0.00013 29.4 0.8 39 260-300 1-39 (67)
194 2guh_A Putative TETR-family tr 53.4 7.1 0.00024 32.1 2.5 33 82-114 39-76 (214)
195 4aci_A HTH-type transcriptiona 53.4 4 0.00014 31.9 0.9 34 81-114 13-51 (191)
196 3txn_A 26S proteasome regulato 53.3 33 0.0011 32.8 7.4 66 82-147 301-366 (394)
197 3g7r_A Putative transcriptiona 53.1 6.7 0.00023 31.9 2.2 35 80-114 33-72 (221)
198 3vib_A MTRR; helix-turn-helix 53.1 6.9 0.00024 31.3 2.3 34 81-114 9-47 (210)
199 2gen_A Probable transcriptiona 53.0 7.2 0.00024 31.1 2.4 31 83-113 8-43 (197)
200 2qww_A Transcriptional regulat 53.0 19 0.00065 27.8 4.8 46 83-131 42-87 (154)
201 3bhq_A Transcriptional regulat 52.9 7 0.00024 31.3 2.3 34 81-114 11-49 (211)
202 2oer_A Probable transcriptiona 52.8 7.9 0.00027 31.3 2.6 33 82-114 24-61 (214)
203 2ibd_A Possible transcriptiona 52.7 7.4 0.00025 31.0 2.4 32 82-113 14-50 (204)
204 2vxz_A Pyrsv_GP04; viral prote 52.7 69 0.0024 28.0 8.6 76 82-168 11-86 (165)
205 2qko_A Possible transcriptiona 52.4 7.6 0.00026 31.1 2.5 31 82-112 28-63 (215)
206 2l01_A Uncharacterized protein 52.4 33 0.0011 26.6 5.9 54 86-142 14-68 (77)
207 3e3m_A Transcriptional regulat 52.4 7.9 0.00027 34.2 2.8 27 93-119 8-34 (355)
208 1uly_A Hypothetical protein PH 52.3 16 0.00053 31.3 4.5 51 82-136 20-73 (192)
209 3eyy_A Putative iron uptake re 52.2 34 0.0012 27.7 6.4 61 81-142 18-83 (145)
210 3dp7_A SAM-dependent methyltra 52.1 13 0.00043 33.8 4.2 62 80-146 33-94 (363)
211 3cjn_A Transcriptional regulat 51.8 81 0.0028 24.4 9.1 47 83-132 53-99 (162)
212 3bni_A Putative TETR-family tr 51.6 7.6 0.00026 31.9 2.4 33 82-114 43-80 (229)
213 2v79_A DNA replication protein 51.4 28 0.00097 28.3 5.8 59 89-147 43-105 (135)
214 1jgs_A Multiple antibiotic res 51.1 27 0.00093 26.3 5.3 47 83-132 35-81 (138)
215 2l02_A Uncharacterized protein 50.8 38 0.0013 26.5 6.1 54 86-142 12-65 (82)
216 3g1o_A Transcriptional regulat 50.7 6.4 0.00022 32.8 1.8 33 81-113 42-79 (255)
217 2qc0_A Uncharacterized protein 50.7 24 0.00082 33.0 5.9 65 80-147 295-360 (373)
218 2np5_A Transcriptional regulat 50.7 7.2 0.00025 31.3 2.1 32 82-113 9-45 (203)
219 1ufm_A COP9 complex subunit 4; 50.4 80 0.0027 23.9 7.9 63 76-138 9-72 (84)
220 2f07_A YVDT; helix-turn-helix, 50.2 8.2 0.00028 30.8 2.3 33 81-113 9-46 (197)
221 1wi9_A Protein C20ORF116 homol 50.2 26 0.00091 26.8 5.0 60 85-145 10-69 (72)
222 1neq_A DNA-binding protein NER 49.8 9.2 0.00031 28.1 2.4 33 80-115 8-40 (74)
223 3ech_A MEXR, multidrug resista 49.8 12 0.00042 28.6 3.2 46 83-131 38-83 (142)
224 2pex_A Transcriptional regulat 49.7 23 0.00078 27.3 4.8 46 83-131 48-93 (153)
225 3iz6_V 40S ribosomal protein S 49.7 18 0.0006 29.7 4.2 60 80-140 44-103 (108)
226 3pas_A TETR family transcripti 49.6 4.4 0.00015 31.3 0.6 33 82-114 8-45 (195)
227 3ljl_A Transcriptional regulat 49.5 4.9 0.00017 31.2 0.9 33 82-114 14-51 (156)
228 2xdn_A HTH-type transcriptiona 49.5 8.1 0.00028 30.9 2.2 32 82-113 11-47 (210)
229 2hsg_A Glucose-resistance amyl 49.5 6.6 0.00022 34.2 1.7 24 97-120 2-25 (332)
230 1ui5_A A-factor receptor homol 49.3 8.7 0.0003 31.3 2.4 32 82-113 9-45 (215)
231 2qib_A TETR-family transcripti 49.2 9.1 0.00031 31.4 2.5 32 82-113 13-49 (231)
232 3geu_A Intercellular adhesion 49.1 4.9 0.00017 31.4 0.8 33 82-114 3-40 (189)
233 3c7j_A Transcriptional regulat 48.6 45 0.0015 28.8 7.0 43 93-137 45-88 (237)
234 2id3_A Putative transcriptiona 48.4 8.9 0.0003 31.4 2.3 33 82-114 40-77 (225)
235 2iai_A Putative transcriptiona 48.3 9 0.00031 31.3 2.3 31 83-113 35-66 (230)
236 2k4b_A Transcriptional regulat 48.2 35 0.0012 26.4 5.6 58 82-142 35-96 (99)
237 3ccy_A Putative TETR-family tr 48.2 9.9 0.00034 30.2 2.5 31 82-112 14-49 (203)
238 2ia2_A Putative transcriptiona 48.1 24 0.00084 31.0 5.3 77 84-165 20-103 (265)
239 2ras_A Transcriptional regulat 48.1 9.1 0.00031 30.4 2.3 32 82-113 11-47 (212)
240 3mnl_A KSTR, transcriptional r 47.9 5.5 0.00019 31.2 0.9 32 82-113 20-56 (203)
241 3tqn_A Transcriptional regulat 47.9 13 0.00043 28.9 3.0 60 82-144 13-77 (113)
242 3e6m_A MARR family transcripti 47.9 22 0.00076 27.9 4.5 47 83-132 54-100 (161)
243 1jko_C HIN recombinase, DNA-in 47.8 18 0.00061 22.7 3.3 38 79-119 6-43 (52)
244 3aqt_A Bacterial regulatory pr 47.8 8.9 0.0003 31.9 2.2 32 81-112 45-81 (245)
245 3oop_A LIN2960 protein; protei 47.6 23 0.0008 27.0 4.5 47 83-132 38-84 (143)
246 2nx4_A Transcriptional regulat 47.3 9.9 0.00034 30.2 2.4 32 82-113 10-46 (194)
247 2wui_A MEXZ, transcriptional r 47.2 11 0.00036 30.3 2.5 33 81-113 10-47 (210)
248 4ham_A LMO2241 protein; struct 47.2 13 0.00044 29.5 3.0 36 94-131 34-70 (134)
249 2hyt_A TETR-family transcripti 46.9 9.5 0.00032 30.3 2.2 31 82-112 12-47 (197)
250 3fiw_A Putative TETR-family tr 46.6 7.9 0.00027 32.2 1.7 32 82-113 25-61 (211)
251 3kkd_A Transcriptional regulat 46.5 8.3 0.00028 31.5 1.8 31 81-111 34-69 (237)
252 2gqq_A Leucine-responsive regu 46.3 4.9 0.00017 32.7 0.4 43 82-125 13-55 (163)
253 2jj7_A Hemolysin II regulatory 46.3 5.3 0.00018 31.1 0.6 33 82-114 7-44 (186)
254 2fa5_A Transcriptional regulat 46.1 24 0.00083 27.4 4.4 47 83-132 50-96 (162)
255 2z99_A Putative uncharacterize 46.1 36 0.0012 30.6 6.0 58 79-136 11-72 (219)
256 3bjb_A Probable transcriptiona 46.0 10 0.00035 30.6 2.3 33 82-114 22-59 (207)
257 2xub_A DNA-directed RNA polyme 45.8 54 0.0018 32.2 7.8 61 86-147 364-430 (534)
258 1t6s_A Conserved hypothetical 45.2 36 0.0012 29.0 5.7 43 94-136 19-66 (162)
259 2w53_A Repressor, SMet; antibi 45.2 11 0.00037 30.3 2.3 32 82-113 11-47 (219)
260 1z0x_A Transcriptional regulat 45.1 9.3 0.00032 31.8 2.0 32 83-114 6-43 (220)
261 3c2b_A Transcriptional regulat 45.0 10 0.00034 30.3 2.1 34 81-114 14-52 (221)
262 3t72_q RNA polymerase sigma fa 44.9 65 0.0022 24.9 6.7 43 77-119 18-61 (99)
263 3boq_A Transcriptional regulat 44.8 13 0.00045 28.9 2.7 48 83-132 48-95 (160)
264 3jw4_A Transcriptional regulat 44.5 14 0.00048 28.5 2.8 43 83-125 42-85 (148)
265 3u5c_Z RP45, S31, YS23, 40S ri 44.4 19 0.00066 29.4 3.6 60 80-140 43-102 (108)
266 2hyj_A Putative TETR-family tr 44.2 10 0.00036 30.3 2.1 33 82-114 12-49 (200)
267 2fbq_A Probable transcriptiona 44.2 11 0.00038 31.1 2.3 31 82-112 7-42 (235)
268 3eqx_A FIC domain containing t 44.2 34 0.0012 32.3 5.9 60 84-146 299-359 (373)
269 2vn2_A DNAD, chromosome replic 44.2 29 0.00098 27.5 4.6 52 96-147 50-105 (128)
270 1lva_A Selenocysteine-specific 43.9 19 0.00064 31.9 3.8 63 70-133 129-192 (258)
271 3eup_A Transcriptional regulat 43.9 6.3 0.00021 30.7 0.7 32 82-113 11-47 (204)
272 1uxc_A FRUR (1-57), fructose r 43.8 12 0.0004 27.1 2.0 22 98-119 1-22 (65)
273 2np3_A Putative TETR-family re 43.7 5.6 0.00019 31.8 0.4 31 83-113 35-66 (212)
274 2i10_A Putative TETR transcrip 43.5 12 0.00041 30.0 2.3 29 86-114 19-48 (202)
275 2pq8_A Probable histone acetyl 43.4 11 0.00038 35.3 2.3 39 84-122 195-233 (278)
276 3crj_A Transcription regulator 43.2 12 0.00041 29.9 2.3 34 80-113 12-50 (199)
277 4hbl_A Transcriptional regulat 43.1 32 0.0011 26.6 4.7 42 83-125 42-83 (149)
278 2zcx_A SCO7815, TETR-family tr 43.0 12 0.00041 31.2 2.3 33 81-113 22-59 (231)
279 3la7_A Global nitrogen regulat 43.0 39 0.0013 28.1 5.5 34 96-131 192-225 (243)
280 3loc_A HTH-type transcriptiona 42.9 6.5 0.00022 30.9 0.6 33 82-114 18-55 (212)
281 3i53_A O-methyltransferase; CO 42.7 17 0.00058 32.1 3.4 56 76-135 19-74 (332)
282 3k0l_A Repressor protein; heli 42.7 17 0.00059 28.6 3.1 47 83-132 47-93 (162)
283 1qpz_A PURA, protein (purine n 42.4 11 0.00037 33.0 2.0 22 98-119 1-22 (340)
284 2pi2_A Replication protein A 3 42.4 5.2 0.00018 36.0 0.0 46 82-129 207-255 (270)
285 2g9w_A Conserved hypothetical 42.3 38 0.0013 26.6 5.1 53 82-136 9-65 (138)
286 3lsj_A DEST; transcriptional r 42.3 8.3 0.00028 30.8 1.2 31 82-112 11-47 (220)
287 2wte_A CSA3; antiviral protein 42.2 28 0.00096 31.0 4.7 47 83-132 153-199 (244)
288 2of7_A Putative TETR-family tr 42.1 14 0.00047 31.1 2.5 34 81-114 47-85 (260)
289 3lmm_A Uncharacterized protein 42.0 5.4 0.00018 40.0 0.0 51 82-135 516-566 (583)
290 3ni7_A Bacterial regulatory pr 41.9 16 0.00055 30.1 2.9 33 82-114 7-44 (213)
291 3v6g_A Probable transcriptiona 41.2 14 0.00046 30.3 2.3 32 82-113 14-50 (208)
292 1zg3_A Isoflavanone 4'-O-methy 40.4 28 0.00096 31.2 4.5 69 74-144 22-101 (358)
293 3h5o_A Transcriptional regulat 40.4 5.9 0.0002 34.7 0.0 24 96-119 3-26 (339)
294 3u2r_A Regulatory protein MARR 40.4 19 0.00066 28.5 3.0 48 83-132 47-95 (168)
295 2qvo_A Uncharacterized protein 40.3 23 0.00078 26.1 3.3 42 95-138 28-69 (95)
296 1fp2_A Isoflavone O-methyltran 39.9 62 0.0021 28.9 6.7 68 74-143 28-98 (352)
297 3s2w_A Transcriptional regulat 39.8 39 0.0013 26.3 4.8 47 83-132 51-97 (159)
298 2hku_A A putative transcriptio 39.7 15 0.0005 29.4 2.3 34 81-114 19-56 (215)
299 2o20_A Catabolite control prot 39.6 6.2 0.00021 34.4 0.0 25 96-120 4-28 (332)
300 3lsg_A Two-component response 39.4 37 0.0013 25.0 4.4 39 83-121 3-43 (103)
301 2oi8_A Putative regulatory pro 39.2 16 0.00055 30.0 2.5 36 79-114 13-53 (216)
302 3bil_A Probable LACI-family tr 38.9 6.4 0.00022 34.9 0.0 26 95-120 6-31 (348)
303 2p8t_A Hypothetical protein PH 38.7 32 0.0011 30.4 4.5 53 84-136 17-74 (200)
304 2g3b_A Putative TETR-family tr 38.4 8.3 0.00028 31.2 0.6 32 82-113 3-39 (208)
305 2jt1_A PEFI protein; solution 38.3 6.2 0.00021 29.8 -0.2 28 271-298 4-36 (77)
306 2pz9_A Putative regulatory pro 38.2 8.9 0.0003 31.3 0.8 32 82-113 30-66 (226)
307 3oio_A Transcriptional regulat 38.1 32 0.0011 25.9 3.8 37 84-120 9-46 (113)
308 3nqo_A MARR-family transcripti 37.6 30 0.001 28.4 3.9 48 83-132 42-90 (189)
309 3l4g_A Phenylalanyl-tRNA synth 37.6 6.9 0.00024 39.2 0.0 45 81-125 4-48 (508)
310 1tbx_A ORF F-93, hypothetical 37.6 1.1E+02 0.0039 22.0 8.5 46 84-132 10-59 (99)
311 4aik_A Transcriptional regulat 37.4 39 0.0013 26.9 4.4 45 84-130 33-77 (151)
312 2k9m_A RNA polymerase sigma fa 37.3 11 0.00038 30.9 1.2 40 85-124 26-66 (130)
313 3hsr_A HTH-type transcriptiona 37.2 26 0.00088 26.9 3.2 47 83-132 37-83 (140)
314 2g7g_A RHA04620, putative tran 37.2 17 0.00057 30.1 2.3 31 82-113 11-45 (213)
315 2hs5_A Putative transcriptiona 37.2 95 0.0033 26.6 7.2 57 83-141 33-94 (239)
316 2yu3_A DNA-directed RNA polyme 36.9 52 0.0018 25.9 5.0 43 82-124 37-80 (95)
317 1qpz_A PURA, protein (purine n 36.9 69 0.0024 27.8 6.3 56 77-132 25-94 (340)
318 1v4r_A Transcriptional repress 36.7 2.9 9.8E-05 31.6 -2.3 37 94-132 31-68 (102)
319 2k5e_A Uncharacterized protein 36.6 33 0.0011 25.3 3.6 30 97-126 40-69 (73)
320 2o7t_A Transcriptional regulat 36.3 17 0.0006 28.6 2.2 32 83-114 9-45 (199)
321 2xub_A DNA-directed RNA polyme 36.3 1E+02 0.0035 30.2 8.1 55 86-141 23-77 (534)
322 2frh_A SARA, staphylococcal ac 36.2 38 0.0013 26.0 4.1 43 83-125 38-81 (127)
323 2l8n_A Transcriptional repress 36.2 12 0.00041 27.2 1.1 23 96-118 8-30 (67)
324 1z6r_A MLC protein; transcript 36.2 36 0.0012 31.3 4.5 40 84-124 18-57 (406)
325 1pzn_A RAD51, DNA repair and r 36.1 41 0.0014 30.9 4.9 52 72-125 33-92 (349)
326 3sxy_A Transcriptional regulat 36.0 89 0.003 26.1 6.7 65 77-144 11-79 (218)
327 1okr_A MECI, methicillin resis 35.8 36 0.0012 25.5 3.8 56 83-141 11-71 (123)
328 2gfn_A HTH-type transcriptiona 35.5 17 0.00057 29.4 2.0 33 81-113 8-45 (209)
329 3hrs_A Metalloregulator SCAR; 35.4 1.3E+02 0.0043 25.6 7.6 40 93-134 16-55 (214)
330 2fxa_A Protease production reg 35.3 44 0.0015 28.2 4.6 42 83-125 49-90 (207)
331 2ou2_A Histone acetyltransfera 35.1 18 0.00061 33.9 2.3 38 85-122 194-237 (280)
332 1mgt_A MGMT, protein (O6-methy 35.1 47 0.0016 28.8 4.9 57 81-142 90-154 (174)
333 3jvd_A Transcriptional regulat 35.1 8 0.00027 34.0 0.0 25 95-119 4-28 (333)
334 3mn2_A Probable ARAC family tr 35.0 39 0.0013 25.1 3.9 36 85-120 5-41 (108)
335 2pjp_A Selenocysteine-specific 35.0 23 0.00078 27.8 2.7 50 82-134 7-56 (121)
336 3t8r_A Staphylococcus aureus C 34.6 53 0.0018 26.5 4.8 44 87-132 16-61 (143)
337 1bl0_A Protein (multiple antib 34.5 49 0.0017 25.6 4.5 39 81-119 10-49 (129)
338 1z05_A Transcriptional regulat 34.4 39 0.0013 31.5 4.5 41 83-124 40-80 (429)
339 1jye_A Lactose operon represso 34.3 8.4 0.00029 34.0 0.0 25 97-121 3-27 (349)
340 3bwg_A Uncharacterized HTH-typ 34.1 27 0.00093 30.2 3.2 57 83-142 10-71 (239)
341 3u1d_A Uncharacterized protein 34.0 49 0.0017 28.0 4.7 70 80-151 27-107 (151)
342 2cqq_A RSGI RUH-037, DNAJ homo 33.9 18 0.0006 27.1 1.7 33 248-293 17-49 (72)
343 4fx0_A Probable transcriptiona 33.8 39 0.0013 26.8 3.9 47 84-132 35-85 (148)
344 1hqc_A RUVB; extended AAA-ATPa 33.7 89 0.003 26.8 6.4 60 78-138 244-304 (324)
345 3rkx_A Biotin-[acetyl-COA-carb 33.7 47 0.0016 30.6 4.9 41 83-123 4-45 (323)
346 3kp7_A Transcriptional regulat 33.6 19 0.00065 27.9 1.9 45 83-131 39-83 (151)
347 3oou_A LIN2118 protein; protei 33.3 42 0.0014 25.0 3.8 37 85-121 8-45 (108)
348 1ylf_A RRF2 family protein; st 33.3 39 0.0013 27.2 3.9 38 87-124 19-57 (149)
349 3dkw_A DNR protein; CRP-FNR, H 33.3 91 0.0031 25.0 6.1 48 82-131 152-210 (227)
350 2k53_A A3DK08 protein; NESG, C 33.1 33 0.0011 25.6 3.1 29 96-124 37-65 (76)
351 2ozu_A Histone acetyltransfera 33.0 28 0.00095 32.8 3.2 38 84-121 200-238 (284)
352 3kjx_A Transcriptional regulat 32.9 67 0.0023 28.0 5.6 57 77-133 35-105 (344)
353 3ic7_A Putative transcriptiona 32.9 24 0.00082 27.9 2.5 84 79-165 12-103 (126)
354 2v57_A TETR family transcripti 32.6 20 0.00069 27.7 2.0 33 81-114 13-49 (190)
355 3kfw_X Uncharacterized protein 32.5 1.1E+02 0.0036 27.6 6.9 64 80-148 2-69 (247)
356 3dbi_A Sugar-binding transcrip 32.2 9.6 0.00033 33.2 0.0 24 97-120 3-26 (338)
357 2b5a_A C.BCLI; helix-turn-heli 31.8 17 0.00058 24.9 1.3 33 81-115 9-41 (77)
358 3ke2_A Uncharacterized protein 31.7 52 0.0018 27.3 4.3 46 87-135 25-70 (117)
359 3c07_A Putative TETR-family tr 31.7 27 0.00091 30.0 2.8 34 81-114 40-78 (273)
360 1z7u_A Hypothetical protein EF 31.6 77 0.0026 24.0 5.1 44 80-125 20-64 (112)
361 3r3t_A 30S ribosomal protein S 31.4 28 0.00094 27.0 2.5 39 248-291 4-44 (99)
362 2wv0_A YVOA, HTH-type transcri 31.1 29 0.001 30.2 3.0 57 83-142 15-76 (243)
363 3ctp_A Periplasmic binding pro 31.1 10 0.00035 33.0 0.0 25 97-121 2-26 (330)
364 1uxc_A FRUR (1-57), fructose r 31.0 28 0.00096 25.0 2.3 22 78-99 29-50 (65)
365 2l8n_A Transcriptional repress 30.9 27 0.00092 25.3 2.3 22 78-99 35-56 (67)
366 2qlz_A Transcription factor PF 30.9 47 0.0016 29.5 4.3 55 81-139 164-218 (232)
367 2k9s_A Arabinose operon regula 30.7 57 0.0019 24.2 4.2 36 85-120 6-43 (107)
368 4b4t_R RPN7, 26S proteasome re 30.6 1.3E+02 0.0046 28.1 7.6 69 79-147 329-397 (429)
369 3gwz_A MMCR; methyltransferase 30.5 28 0.00097 31.6 2.8 49 96-147 70-118 (369)
370 4b4t_O 26S proteasome regulato 30.2 44 0.0015 31.3 4.2 75 95-170 305-382 (393)
371 2ev1_A Hypothetical protein RV 30.1 31 0.0011 31.1 3.0 38 98-140 79-116 (222)
372 3lwf_A LIN1550 protein, putati 29.8 62 0.0021 27.0 4.6 30 95-124 42-71 (159)
373 3df8_A Possible HXLR family tr 29.7 62 0.0021 24.8 4.3 60 83-144 28-88 (111)
374 3gva_A Alkyltransferase-like p 29.7 34 0.0012 27.9 2.9 57 82-138 5-67 (116)
375 3eet_A Putative GNTR-family tr 29.4 32 0.0011 30.7 2.9 43 83-125 34-81 (272)
376 2fi0_A Conserved domain protei 29.3 15 0.0005 27.5 0.6 27 95-121 47-73 (81)
377 2r3s_A Uncharacterized protein 29.2 38 0.0013 29.5 3.3 59 80-145 24-82 (335)
378 3ihu_A Transcriptional regulat 28.9 1.5E+02 0.0053 24.7 7.0 49 93-145 35-84 (222)
379 4b4t_Q 26S proteasome regulato 28.8 1.4E+02 0.0046 25.8 6.8 69 79-147 338-406 (434)
380 2k9q_A Uncharacterized protein 28.8 45 0.0015 23.1 3.1 32 81-114 1-32 (77)
381 1fse_A GERE; helix-turn-helix 28.7 73 0.0025 21.6 4.1 47 77-127 10-56 (74)
382 3dv8_A Transcriptional regulat 28.5 41 0.0014 26.9 3.2 49 82-132 147-202 (220)
383 3edp_A LIN2111 protein; APC883 28.4 30 0.001 30.0 2.5 49 81-131 12-65 (236)
384 3iuo_A ATP-dependent DNA helic 28.0 59 0.002 25.9 4.0 40 86-125 21-60 (122)
385 3cjd_A Transcriptional regulat 27.9 27 0.00093 27.9 2.0 33 80-112 10-47 (198)
386 2kz3_A Putative uncharacterize 27.5 89 0.0031 23.9 4.8 50 77-127 6-63 (83)
387 3dbi_A Sugar-binding transcrip 27.3 33 0.0011 29.8 2.6 57 77-133 28-100 (338)
388 1fx7_A Iron-dependent represso 27.3 2.4E+02 0.0083 23.9 8.1 59 83-144 7-68 (230)
389 3p9c_A Caffeic acid O-methyltr 27.3 44 0.0015 30.5 3.5 52 79-132 37-94 (364)
390 2hxi_A Putative transcriptiona 27.1 31 0.0011 29.3 2.4 33 82-114 29-66 (241)
391 1ais_B TFB TFIIB, protein (tra 27.1 52 0.0018 27.3 3.7 39 88-126 156-194 (200)
392 3f8m_A GNTR-family protein tra 27.0 54 0.0018 28.6 3.9 45 94-142 32-77 (248)
393 2fbk_A Transcriptional regulat 26.8 21 0.00073 28.8 1.2 43 83-125 70-114 (181)
394 2hsg_A Glucose-resistance amyl 26.7 31 0.0011 29.9 2.3 23 77-99 27-49 (332)
395 4ac0_A Tetracycline repressor 26.7 18 0.0006 30.3 0.7 30 84-113 5-39 (202)
396 1x57_A Endothelial differentia 26.7 87 0.003 22.3 4.4 38 75-114 6-43 (91)
397 1b4a_A Arginine repressor; hel 26.4 1.3E+02 0.0045 25.0 6.1 56 83-144 6-67 (149)
398 3qyf_A Crispr-associated prote 26.4 56 0.0019 31.1 4.1 66 71-147 197-264 (324)
399 2z43_A DNA repair and recombin 26.3 14 0.00048 33.2 0.0 51 72-124 10-68 (324)
400 1pdn_C Protein (PRD paired); p 26.3 1.2E+02 0.004 22.2 5.2 47 75-124 14-60 (128)
401 2g7h_A Methylated-DNA--protein 26.0 79 0.0027 27.3 4.7 58 81-143 78-142 (167)
402 3ryp_A Catabolite gene activat 25.9 80 0.0027 25.0 4.5 34 97-132 167-200 (210)
403 4ich_A Transcriptional regulat 25.9 33 0.0011 29.8 2.3 35 80-114 118-157 (311)
404 1ft9_A Carbon monoxide oxidati 25.7 78 0.0027 25.6 4.4 51 81-133 133-197 (222)
405 2jpc_A SSRB; DNA binding prote 25.5 74 0.0025 21.0 3.6 33 95-127 11-43 (61)
406 2l42_A DNA-binding protein RAP 25.5 29 0.00099 28.4 1.7 17 274-290 33-49 (106)
407 1xd7_A YWNA; structural genomi 25.5 78 0.0027 25.3 4.3 37 87-124 14-50 (145)
408 1wrj_A Methylated-DNA--protein 25.5 72 0.0024 27.1 4.3 55 81-135 70-128 (156)
409 1x19_A CRTF-related protein; m 25.4 55 0.0019 29.3 3.7 69 74-149 43-111 (359)
410 1fp1_D Isoliquiritigenin 2'-O- 25.3 91 0.0031 28.1 5.2 63 79-143 41-118 (372)
411 3ulq_B Transcriptional regulat 25.2 68 0.0023 24.0 3.7 32 96-127 43-74 (90)
412 2ip2_A Probable phenazine-spec 25.0 60 0.002 28.5 3.9 50 82-135 28-77 (334)
413 1tw3_A COMT, carminomycin 4-O- 24.9 53 0.0018 29.1 3.6 62 75-142 32-93 (360)
414 1cqm_A Ribosomal protein S6; a 24.6 53 0.0018 25.4 3.1 39 248-291 1-41 (101)
415 2hzt_A Putative HTH-type trans 24.6 83 0.0028 23.6 4.1 41 83-125 15-56 (107)
416 3iwz_A CAP-like, catabolite ac 24.5 91 0.0031 25.1 4.6 49 82-132 159-220 (230)
417 2hoe_A N-acetylglucosamine kin 24.4 29 0.00098 31.8 1.7 38 85-124 23-60 (380)
418 2ra5_A Putative transcriptiona 24.3 16 0.00056 31.9 0.1 50 76-125 18-68 (247)
419 1z6t_A APAF-1, apoptotic prote 24.2 1.6E+02 0.0055 27.8 6.9 74 76-152 372-448 (591)
420 3b02_A Transcriptional regulat 23.9 68 0.0023 25.5 3.7 50 81-132 110-172 (195)
421 1zug_A Phage 434 CRO protein; 23.8 73 0.0025 21.1 3.3 31 83-115 4-34 (71)
422 2opt_A Actii protein; helical 23.7 36 0.0012 29.0 2.1 32 83-114 7-43 (234)
423 3k69_A Putative transcription 23.7 44 0.0015 27.7 2.6 38 87-124 17-55 (162)
424 3b7h_A Prophage LP1 protein 11 23.6 72 0.0024 21.6 3.3 31 82-114 7-37 (78)
425 2oz6_A Virulence factor regula 23.5 93 0.0032 24.5 4.4 34 97-132 164-197 (207)
426 3ctp_A Periplasmic binding pro 23.5 61 0.0021 28.0 3.6 55 77-131 27-95 (330)
427 1sd4_A Penicillinase repressor 23.4 2.3E+02 0.0078 21.0 7.6 53 82-137 10-66 (126)
428 1je8_A Nitrate/nitrite respons 23.3 1.4E+02 0.0047 21.5 5.0 47 78-128 21-67 (82)
429 1hw1_A FADR, fatty acid metabo 23.2 42 0.0014 28.3 2.4 57 83-142 12-73 (239)
430 3e3m_A Transcriptional regulat 22.9 59 0.002 28.5 3.4 56 77-132 37-106 (355)
431 2di3_A Bacterial regulatory pr 22.8 52 0.0018 27.9 3.0 48 94-143 24-77 (239)
432 1stz_A Heat-inducible transcri 22.7 90 0.0031 29.0 4.8 43 82-124 17-65 (338)
433 3d0s_A Transcriptional regulat 22.6 90 0.0031 25.2 4.2 34 97-132 177-210 (227)
434 1qzz_A RDMB, aclacinomycin-10- 22.6 60 0.0021 28.8 3.4 67 73-143 27-93 (374)
435 3rag_A Uncharacterized protein 22.4 1.3E+02 0.0046 27.2 5.7 58 75-132 110-175 (242)
436 2g7l_A TETR-family transcripti 22.3 45 0.0015 28.5 2.4 32 83-114 20-56 (243)
437 3h5t_A Transcriptional regulat 22.3 38 0.0013 29.9 2.0 21 77-97 34-54 (366)
438 2ysk_A Hypothetical protein TT 22.2 12 0.00041 31.1 -1.2 67 100-166 20-94 (145)
439 3fx3_A Cyclic nucleotide-bindi 22.2 1.6E+02 0.0056 23.8 5.8 56 79-138 150-215 (237)
440 2elh_A CG11849-PA, LD40883P; s 21.9 1.2E+02 0.0041 22.1 4.5 40 78-120 22-61 (87)
441 2kog_A Vesicle-associated memb 21.7 1.9E+02 0.0063 23.4 5.9 12 155-166 86-97 (119)
442 1ku3_A Sigma factor SIGA; heli 21.7 1.1E+02 0.0037 21.3 4.0 44 77-120 9-53 (73)
443 3h5o_A Transcriptional regulat 21.7 54 0.0019 28.5 2.9 57 77-133 29-99 (339)
444 2zcw_A TTHA1359, transcription 21.5 1.1E+02 0.0039 24.2 4.6 49 82-132 118-179 (202)
445 2fmy_A COOA, carbon monoxide o 21.5 86 0.0029 25.3 3.9 50 81-132 137-200 (220)
446 3lap_A Arginine repressor; arg 21.3 1.9E+02 0.0064 24.8 6.1 57 72-146 27-85 (170)
447 2vpr_A Tetracycline resistance 21.3 26 0.00088 29.1 0.7 32 82-113 4-40 (207)
448 2o20_A Catabolite control prot 21.2 76 0.0026 27.4 3.7 56 77-132 30-99 (332)
449 3pfi_A Holliday junction ATP-d 20.9 1.6E+02 0.0053 25.6 5.7 51 86-137 267-318 (338)
450 1sfe_A ADA O6-methylguanine-DN 20.8 64 0.0022 28.0 3.1 57 81-138 95-158 (180)
451 3lda_A DNA repair protein RAD5 20.7 1E+02 0.0034 29.3 4.7 53 72-125 79-140 (400)
452 2qlz_A Transcription factor PF 20.6 67 0.0023 28.5 3.3 52 81-136 11-63 (232)
453 1tty_A Sigma-A, RNA polymerase 20.5 1E+02 0.0035 22.3 3.8 53 77-129 17-70 (87)
454 1r69_A Repressor protein CI; g 20.5 91 0.0031 20.5 3.3 29 85-115 4-32 (69)
455 3bil_A Probable LACI-family tr 20.5 74 0.0025 27.9 3.5 56 77-132 33-102 (348)
456 1adr_A P22 C2 repressor; trans 20.5 82 0.0028 21.1 3.1 31 82-114 5-35 (76)
457 3bqy_A Putative TETR family tr 20.4 45 0.0015 27.5 2.0 29 86-114 10-39 (209)
458 1zyb_A Transcription regulator 20.4 1.2E+02 0.0042 24.8 4.6 52 79-132 160-219 (232)
459 3lmm_A Uncharacterized protein 20.4 1.3E+02 0.0045 30.0 5.7 63 85-151 433-498 (583)
460 1aw0_A Menkes copper-transport 20.3 50 0.0017 21.3 1.8 19 84-102 54-72 (72)
461 3mcz_A O-methyltransferase; ad 20.2 59 0.002 28.7 2.9 49 96-149 55-103 (352)
No 1
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.68 E-value=0.016 Score=44.20 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHhc-----CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 82 ~~~~~im~Ave~~-----g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+...+|++.+++. ||.+|+.|+|...|+|...+++.|.+|..+ |.|+-.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k--G~I~R~ 57 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV--GVLEKV 57 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEec
Confidence 4567899999888 999999999999999999999999999876 344443
No 2
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.59 E-value=0.027 Score=41.02 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesG 135 (303)
.+++|++.+++.+..+|+.|+|...|++...+.+.|..|.++.- ++.++.|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~--I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR--VSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS--EEEEETT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc--EecCCCc
Confidence 57899999999888899999999999999999999999987644 6656666
No 3
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=95.13 E-value=0.019 Score=51.98 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=50.4
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhH
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fR 146 (303)
..+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|.+|. .++.+++|+|+. ||---|
T Consensus 21 ~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp~S~~ 79 (220)
T 3f2g_A 21 ADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YGLTLR 79 (220)
T ss_dssp HHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SSEESS
T ss_pred hHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ecCCCC
Confidence 445667788887 89999999999999999999999999985 699999999977 765544
No 4
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=95.13 E-value=0.027 Score=42.56 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 022049 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~Le 130 (303)
+.++.-+....+..|+|+||+.-|.|+++|+.+|..|-+| |.|+
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~--G~LR 49 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA--GTLR 49 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc--chhh
Confidence 4667778888999999999999999999999999999886 4444
No 5
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.05 E-value=0.07 Score=41.94 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
+..++|++++++.|.-+..||||..+|++..++.++|.+|-.+.
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999999998764
No 6
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.17 E-value=0.23 Score=37.88 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee-----ccccEEEEc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYVF 141 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs-----esGdIlYvF 141 (303)
+.+-+|+..+.+.|.++|+.|+|...|+|...+.++|..|.++. -++.. ..|-.+|.+
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G--lV~~~~~~~~~~g~~v~~~ 80 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG--FVSYRKTRDKDSGWFIYYW 80 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT--SCEEEEEC---CCCCEEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEEEecccCCCceEEEEe
Confidence 45678999887788789999999999999999999999999875 45554 467777733
No 7
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.07 E-value=0.58 Score=37.06 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHhcCCc-eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee----ccccEEEEc-ChhhHHHHhhhhHH
Q 022049 82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVF-PNNYRAKLAAKSFR 155 (303)
Q Consensus 82 ~~~~~im~Ave~~g~r-vTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs----esGdIlYvF-P~~fRs~l~~Ks~r 155 (303)
..+-+|+.++.+.+.. +|+.|+|...|++...+.+.|..|.... -++-. +.|-..|+| +...... ..-.+
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G--lV~r~~~~~d~~~~~~~y~~~~~~~~--~~~i~ 101 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE--ILQRSQQNLDGGGYVYIYKIYSKNQI--RNIIQ 101 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT--SEEEEEEECTTSCEEEEEEECCHHHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEeeCCccCCCcceEEEecCCHHHH--HHHHH
Confidence 3467899999988877 9999999999999999999999998764 44332 234456665 3333332 23456
Q ss_pred HhHHHHHHHHhhhh
Q 022049 156 LKVEPVIDKAKAAA 169 (303)
Q Consensus 156 ~rlq~~~~k~w~v~ 169 (303)
..++.|.+.+...+
T Consensus 102 ~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 102 KIVQSWADRLGQEL 115 (123)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777765543
No 8
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=92.66 E-value=0.14 Score=46.65 Aligned_cols=71 Identities=17% Similarity=0.339 Sum_probs=53.5
Q ss_pred ccccCC--CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 73 IVESDK--LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 73 ~~~~~~--l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
.|+|.. |.++. .+|++.++.+| .||+.+++...|.+..-|+.+|..|.++.-.-+.-..+||-.|-||.-|
T Consensus 144 ~VqSvp~el~~D~-~~vLela~~~g-~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Yw~P~lf 216 (234)
T 3cuq_A 144 LIQSVPAELNMDH-TVVLQLAEKNG-YVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF 216 (234)
T ss_dssp EEECSCCCCCHHH-HHHHHHHTTTS-EECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEEECTTSS
T ss_pred EEEeCCCccchHH-HHHHHHHHhcC-cCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCCCCcceeecchhh
Confidence 344443 44443 45778888665 5999999999999999999999998887655555434689999999655
No 9
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=91.87 E-value=0.38 Score=42.90 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=53.6
Q ss_pred cccCCCC-chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 74 ~~~~~l~-~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
|++..-. .....+|++.++.+| .||+.++|..-|.+..-|+..|..+.. .|.|=+.++++-+|.||.-|
T Consensus 145 vqs~~~~~~~~~~~il~~~~~~g-~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f 214 (218)
T 3cuq_B 145 IELQSHKEEEMVASALETVSEKG-SLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF 214 (218)
T ss_dssp EEETTCCGGGGHHHHHHHHHHTS-CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred EEcCCCchHHHHHHHHHHHHHCC-CcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 5554332 356788899888766 499999999999999999999998666 56666666666688899655
No 10
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.74 E-value=0.16 Score=39.08 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=49.9
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeeccccEEEEcChh
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~-eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~ 144 (303)
++.+++|++.+++.|. +|+.|+|..-|++.. .+++.|..|..+ |-++-...|-.+|.-...
T Consensus 10 ~~~~~~IL~~Lk~~g~-~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~LT~~ 71 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSD-SSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHLTDK 71 (79)
T ss_dssp HHHHHHHHHHHHHTCC-EEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEECHH
T ss_pred hhHHHHHHHHHHHcCC-cCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEeCHh
Confidence 3578999999999984 999999999999999 999999999986 455545567677765443
No 11
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.61 E-value=0.16 Score=38.90 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=42.0
Q ss_pred CchhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
..+...+|++++++.+ .++|+.|+|.+.|++...+++.|..|..+ |.|+.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~--G~I~~ 59 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence 3456788999999887 58999999999999999999999999875 34543
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.56 E-value=0.23 Score=36.36 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
+.+|++.+.+.| .+|+.|+|...|++...+.+.|..|.++ |-++.
T Consensus 2 r~~Il~~L~~~~-~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRHN-GGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR 46 (81)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 578999998765 5999999999999999999999999876 55664
No 13
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=90.98 E-value=0.45 Score=34.59 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEE
Q 022049 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (303)
Q Consensus 81 ~~~~~~im~Ave~~g-~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYv 140 (303)
...|..|++.+.+.+ ..+|+.|++... +++...+-+.|..|....--+-...++|...|.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 456788999998876 789999999998 999999999999999875433222235566665
No 14
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=90.86 E-value=0.22 Score=45.43 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=47.4
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
..+|++.++..| .||+.+++...|.+..-|+.+|..|.++.-.-+.-..+|+..|-||..|
T Consensus 169 ~~~vLe~a~~~g-~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Yw~P~lf 229 (233)
T 1u5t_A 169 QTKILEICSILG-YSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPSWI 229 (233)
T ss_dssp HHHHHHTTTTTS-CCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEECGGGG
T ss_pred HHHHHHHHHhcC-cCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCCCccceechhhh
Confidence 456678887665 4999999999999999999999998776544443323458899999665
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.08 E-value=0.46 Score=35.57 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=40.1
Q ss_pred CchhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
..+...+|++++++++ .++|+.|+|.+.|++...+++.|..|..+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3455688999999988 589999999999999999999999998754
No 16
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.69 E-value=0.45 Score=36.19 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
..-.+|++.|++.| ++|+.|+|..-|+|...+++.|..|.+..
T Consensus 2 m~L~~Il~~L~~~g-~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 2 ASLIQVRDLLALRG-RMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp CCHHHHHHHHHHSC-SBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHcC-CCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34467999998865 59999999999999999999999999874
No 17
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.61 E-value=0.38 Score=37.50 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=38.5
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
..+..+|++.+++.| .|+.|+|.+-|++...+++-|..|..+.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 357789999999777 9999999999999999999999998763
No 18
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=89.54 E-value=0.45 Score=37.19 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
..-.+|++.|++.| ++|+.|+|..-|+|...+++.|..|....
T Consensus 2 m~L~~Il~~L~~~g-~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 2 ASLMEVRDMLALQG-RMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp CCTHHHHHHHHHSC-SEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcC-CCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34468999998865 69999999999999999999999998764
No 19
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=87.88 E-value=5.5 Score=29.77 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEc
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvF 141 (303)
|....|-+|+..+ ..| ..|+.|+|...|++...+.+.|..|.. .|-++...+|. ..|..
T Consensus 18 l~~~~r~~IL~~L-~~~-~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~~~gr~~~y~l 77 (114)
T 2oqg_A 18 LSDETRWEILTEL-GRA-DQSASSLATRLPVSRQAIAKHLNALQA--CGLVESVKVGREIRYRA 77 (114)
T ss_dssp TTCHHHHHHHHHH-HHS-CBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred hCChHHHHHHHHH-HcC-CCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEEecCCEEEEEe
Confidence 3445678899999 444 489999999999999999999999965 46777666676 44444
No 20
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.84 E-value=1.1 Score=32.68 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=46.9
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEcC
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFP 142 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvFP 142 (303)
....+-+|+.++.+ ++..|+.|+|...|++...+.+.|..|.. .|-++...+|. ..|...
T Consensus 22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~--~glv~~~~~~r~~~y~l~ 82 (99)
T 3cuo_A 22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRD--EGLIDSQRDAQRILYSIK 82 (99)
T ss_dssp CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEEECSSCEEEEEC
T ss_pred CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEEC
Confidence 34567889999865 56799999999999999999999999964 57777666665 445443
No 21
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=86.87 E-value=3.6 Score=31.89 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=48.2
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEcCh
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFPN 143 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvFP~ 143 (303)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|. ..|..-.
T Consensus 15 l~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~~~gr~~~y~l~~ 76 (118)
T 3f6o_A 15 LADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTHKQGRVRTCAIEK 76 (118)
T ss_dssp HTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECS
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEEecCCEEEEEECH
Confidence 34567888999997 35689999999999999999999999964 57787777776 4454433
No 22
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=86.77 E-value=2.1 Score=32.50 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=47.3
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
|....|-+|+..+. . +..|++|+|...|++...+.+.|..|. ..|-++...+|.-+|..
T Consensus 23 l~~~~r~~IL~~L~-~-~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 23 LGDYNRIRIMELLS-V-SEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp TCSHHHHHHHHHHH-H-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH-h-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCCEEEEE
Confidence 34556788999987 3 458999999999999999999999997 46778877778755543
No 23
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.65 E-value=1.1 Score=33.43 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=43.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
....|.+|++.+ . +..|++|+|...|++...+.+.|..|... |-++... | .|..
T Consensus 29 ~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~--Glv~~~~-g--~y~l 82 (96)
T 1y0u_A 29 TNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAG--FCIERVG-E--RWVV 82 (96)
T ss_dssp SCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-T--EEEE
T ss_pred CCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEC-C--EEEE
Confidence 345677889998 3 45999999999999999999999999765 6666666 6 5554
No 24
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=86.09 E-value=1.1 Score=33.31 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=47.3
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvF 141 (303)
....|-+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|..
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 21 ANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp CSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCCEEEE
T ss_pred CCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 34567788998876 6799999999999999999999999975 57788888776 44544
No 25
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=85.95 E-value=1.7 Score=33.44 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=46.3
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
...|-+|+..+.+ +..|+.|+|...|++...+.+.|..|.. .|-++...+|.-+|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 80 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKS--GGLVEARREGTRQYYR 80 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 4557789999874 5689999999999999999999999976 4678777788755543
No 26
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=84.79 E-value=2.1 Score=34.42 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc--CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHHHhh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKA--GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAA 151 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~a--GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~l~~ 151 (303)
.+.+|++.+.+.| +.|++++|... |++...+.+-|..|..+ |-++....| +|.-...=+..|..
T Consensus 14 ~d~~IL~~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~--GLV~~~~rg--~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH--DLLQPLANG--VYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT--TSEEECSTT--CEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCEEecCCc--eEEECchHHHHHHH
Confidence 4688999998876 89999999999 99999999999999875 555555555 77776555555544
No 27
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=82.84 E-value=2 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=42.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.|-.-..+++-++..|+-+-+.++|++-|++.+++-..|..|+++.
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4556688999999999999999999999999999999999999874
No 28
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=82.72 E-value=8.1 Score=30.12 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHH
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAK 148 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~ 148 (303)
.+.+...++..+..++..|++..+|++.++.++.|.+|.+... -+.+..+++..| +..++-..
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~ 66 (135)
T 2v9v_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQ-VTLLRVENDLYA-ISTERYQA 66 (135)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTC-EEEEEETTEEEE-EEHHHHHH
T ss_pred HHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCc-EEEEecCCCeEE-ecHHHHHH
Confidence 4567777888888887799999999999999999999986544 555543344334 54444443
No 29
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.97 E-value=0.99 Score=35.44 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=32.8
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHH
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
+.+-+.+|++.+.+.+ +|+.|||..+|+|...+.+.|.
T Consensus 5 ~~~R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 5 IKERTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 3456678899999887 9999999999999999988873
No 30
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=80.90 E-value=13 Score=26.79 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec--cccEEEEc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVF 141 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse--sGdIlYvF 141 (303)
..+-+|+..+.+.+ .+|+.|+|...|++...+.+.|..|.++ |-++... ++...|.+
T Consensus 20 ~~~~~il~~l~~~~-~~s~~ela~~l~is~~tv~~~l~~L~~~--glv~~~~~~~~r~~~~~ 78 (109)
T 1sfx_A 20 PSDVRIYSLLLERG-GMRVSEIARELDLSARFVRDRLKVLLKR--GFVRREIVEKGWVGYIY 78 (109)
T ss_dssp HHHHHHHHHHHHHC-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEeecCCceEEEE
Confidence 45677899997754 5999999999999999999999999776 4455433 45455544
No 31
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=80.82 E-value=4.2 Score=31.64 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
...|-+|+..+.+ +..|+.|+|...|++...+.+.|..|.. .|-++...+|.-+|..
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 76 (118)
T 2jsc_A 20 DPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVATYEGRQVRYA 76 (118)
T ss_dssp SHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEEECSSSEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEEEECCEEEEE
Confidence 4567789998873 3589999999999999999999999976 6778887777744443
No 32
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=80.52 E-value=13 Score=26.77 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec---cccE-EEEcChhh
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDV-LYVFPNNY 145 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse---sGdI-lYvFP~~f 145 (303)
....+-+|+..+.+.+ ..|+.|+|...|++...+.+.|..|..+ |-++... +|.- .|.-...-
T Consensus 14 ~~~~~~~iL~~L~~~~-~~~~~ela~~l~is~~tvs~~l~~L~~~--gli~~~~~~~~~r~~~~~lt~~g 80 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRR-KAPFSQIQKVLDLTPGNLDSHIRVLERN--GLVKTYKVIADRPRTVVEITDFG 80 (100)
T ss_dssp HSHHHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEECSSSCEEEEEECHHH
T ss_pred CChHHHHHHHHHHhcC-CcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCcceEEEEECHHH
Confidence 3445778898887655 6999999999999999999999999887 5665433 5554 44444433
No 33
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=79.50 E-value=4.7 Score=33.32 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|.-+|..
T Consensus 55 L~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~--aGlV~~~~~Gr~~~y~ 113 (151)
T 3f6v_A 55 AAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTE--AGLVTPRKDGRFRYYR 113 (151)
T ss_dssp HTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEE
Confidence 34567889999997 35699999999999999999999999965 4678888888755443
No 34
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=79.38 E-value=2.4 Score=34.04 Aligned_cols=42 Identities=7% Similarity=0.257 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+.+|++++.+.| +.|..|+|.+.|+|...+.+-|..|.+..
T Consensus 8 ~~~~il~~L~~~~-~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 8 IDKKIIKILQNDG-KAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4568899998765 89999999999999999999999998764
No 35
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=78.65 E-value=1.2 Score=35.71 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCCCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 77 DKLPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 77 ~~l~~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
.+++.+.|++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 48 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGS 48 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHH
Confidence 356777888887775 56688 89999999999999754
No 36
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=77.95 E-value=6.4 Score=31.06 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
...|-+|+.++.+ +..|++|+|...|++...+-+.|..|-. .|-++...+|.-+|..
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~~~gr~~~y~ 101 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYRKQGRHVYYQ 101 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 3456678888864 4689999999999999999999999988 6778777778755554
No 37
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=77.36 E-value=2.4 Score=33.70 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+.+|++++.+. .+.|..|+|.+.|+|...+.+.|..|.+..
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 467899988765 479999999999999999999999998765
No 38
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=77.30 E-value=19 Score=27.68 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 85 NRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 85 ~~im~Ave~---~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
..+++++.. .+..+|+.|+|...|++...+.+.|..|..+ |-++...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~--Gli~r~~ 65 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK--GLVKKKE 65 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC--CCEEecC
Confidence 445555543 4778999999999999999999999999887 6776655
No 39
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=76.86 E-value=2.8 Score=36.02 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCCCch-hhHHHHHHHHhcCCc----eeeh-h-hhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEE
Q 022049 77 DKLPAD-VRNRAMDAVDACNRR----VTIG-D-VAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (303)
Q Consensus 77 ~~l~~~-~~~~im~Ave~~g~r----vTvg-D-VAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlY 139 (303)
-+++++ ...+|++.++..++. +|.. + +|.+.|.+..-|+..|..+.++.-.-..-+.+| +-|
T Consensus 93 ~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G-~~y 161 (169)
T 1u5t_B 93 TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG-IYY 161 (169)
T ss_dssp ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC-EEE
T ss_pred eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc-ceE
Confidence 445554 346789999988677 9999 9 999999999999999999877654444444466 444
No 40
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.76 E-value=3.2 Score=33.18 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
.+.+|++++.+. ++.|..|+|.+.|+|...+.+.|..|.+.
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889999765 57999999999999999999999999765
No 41
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=76.64 E-value=3 Score=34.86 Aligned_cols=43 Identities=7% Similarity=0.272 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
+.+.+|++++.+.+ +.|..|+|.+.|+|...+.+-|..|-++.
T Consensus 27 ~~d~~IL~~L~~~~-~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDG-KAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34568899998764 89999999999999999999999997764
No 42
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=76.50 E-value=4.7 Score=30.42 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=45.9
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
....|-+|+..+...| ..|+.|+|...|++...+-+-|..|... -++...+|.-+|..
T Consensus 25 ~~~~Rl~IL~~l~~~~-~~~~~ela~~l~is~stvs~hL~~L~~~---lv~~~~~gr~~~y~ 82 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHK-ALNVTQIIQILKLPQSTVSQHLCKMRGK---VLKRNRQGLEIYYS 82 (99)
T ss_dssp CSHHHHHHHHHHHHHS-CEEHHHHHHHHTCCHHHHHHHHHHHBTT---TBEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHCC-CcCHHHHHHHHCcCHHHHHHHHHHHHHH---hhhheEeCcEEEEE
Confidence 3456778887776654 4999999999999999999999999876 67777778755544
No 43
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=76.44 E-value=3.9 Score=36.26 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=43.6
Q ss_pred HhcCCceeehhhhhhcCCCHHHHHHHHH--------------HHHhhcCC--------ceEeeccccEEEEcChhhHHHH
Q 022049 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTDG--------FLEVSDEGDVLYVFPNNYRAKL 149 (303)
Q Consensus 92 e~~g~rvTvgDVAa~aGLsl~eAe~aL~--------------aLAad~~G--------~LeVsesGdIlYvFP~~fRs~l 149 (303)
.....++|+.|||..+|+|...+-++|. +.|.+.|= .|.-..++.|..++|.....-+
T Consensus 4 ~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~ 83 (366)
T 3h5t_A 4 GRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAF 83 (366)
T ss_dssp ---CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHH
T ss_pred CccCCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccc
Confidence 3456789999999999999999887774 33444332 2555567778888887544334
Q ss_pred hhhhHHHhHHHHHHHH
Q 022049 150 AAKSFRLKVEPVIDKA 165 (303)
Q Consensus 150 ~~Ks~r~rlq~~~~k~ 165 (303)
.+.++..-++.+-+.+
T Consensus 84 ~~~~~~~~~~gi~~~a 99 (366)
T 3h5t_A 84 EDMASVDFLAGVAQAA 99 (366)
T ss_dssp HSHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4555554444444433
No 44
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=76.29 E-value=3.2 Score=33.24 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+.+|++++.+. .+.|..|+|.+.|+|...+.+.|..|....
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 456889988776 579999999999999999999999997764
No 45
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=76.01 E-value=1.4 Score=34.40 Aligned_cols=34 Identities=6% Similarity=0.127 Sum_probs=23.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
|+.|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 1 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 39 (194)
T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNL 39 (194)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhH
Confidence 3455666554 567786 599999999999997654
No 46
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=75.95 E-value=4.6 Score=29.29 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=36.1
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+-.++..+-+.+..+|+.|+|...|++...+.+.|..|.+. |-++..
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~--g~v~~~ 69 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL--GLVVRT 69 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCeEee
Confidence 34455555554667999999999999999999999999765 455544
No 47
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=75.81 E-value=2.6 Score=36.47 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAa 123 (303)
-+..|++.++++| .+|+.|+|..-|.|....++.|.+|..
T Consensus 13 R~~~i~~~l~~~~-~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDSNP-FITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCC-CEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 4566788888755 699999999999999999999999854
No 48
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=75.42 E-value=3.8 Score=32.64 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
...+|++++++. .+.|..|+|.+.|+|...+.+.|..|.++.
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456889988765 679999999999999999999999997763
No 49
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=75.11 E-value=4.6 Score=31.09 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 81 ~~~~~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
++.-+.+++++..++ ...|.-++|-+-|++..++.+.|-.|..+ |-|.+..
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk--G~V~~~~ 63 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE--DTVKMVP 63 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEC
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC--CCEecCC
Confidence 578899999999885 44899999999999999999999999876 3444443
No 50
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=75.09 E-value=3.2 Score=31.02 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEcCh
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFPN 143 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvFP~ 143 (303)
....|-+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|.-..
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 21 SHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp CSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSSCCEEEECS
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEECc
Confidence 44567889999964 4599999999999999999999999965 46777777776 5555433
No 51
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.95 E-value=9.3 Score=25.88 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeec-cccEEEE
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSD-EGDVLYV 140 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVse-sGdIlYv 140 (303)
.|..++..+-+.+..+|+.|++... ++|...+.+.|..+ |-+++.. +|...|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l-----g~v~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL-----HLVKVPTNNGSYKYS 63 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH-----TCEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc-----CCEEEecCCCceeee
Confidence 4555555444556689999999998 99999999999944 4456654 4555564
No 52
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=74.90 E-value=8 Score=30.71 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....=-+=-...+|...|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 356788999999888889999999876 9999999999999988754432233467788875
No 53
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=74.65 E-value=3.8 Score=32.01 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+.+|++++.+. .+.|..|+|.+.|+|...+.+.|..|.++.
T Consensus 5 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 46 (141)
T 1i1g_A 5 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKG 46 (141)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456789988765 468999999999999999999999998764
No 54
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=74.33 E-value=11 Score=28.65 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcCh
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~ 143 (303)
..+-+|+.++.+ ...|+.|+|...|++...+.+.|..|-. -|-+....+|.-+|..+.
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEEc
Confidence 456788899887 4689999999999999999999999988 566766666765554443
No 55
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=74.11 E-value=1.4 Score=34.95 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=24.5
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~ 112 (303)
...|++|++|. .+.|| .+|+.|||.++|++..
T Consensus 6 ~~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~ 42 (178)
T 4hku_A 6 RLSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTHA 42 (178)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCHh
Confidence 34577777665 45698 5899999999999853
No 56
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=74.08 E-value=1.8 Score=34.72 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=25.1
Q ss_pred hhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.|+.+|+.|||.++|++....
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tl 49 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTV 49 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Confidence 45566555 567799999999999999997654
No 57
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=74.01 E-value=3.6 Score=36.29 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 85 NRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 85 ~~im~Ave~---~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
.|.++.++. .+..+|+.|+|.+.|++...+-+-|..|.+ .|.|+-.++| -|.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~~~--~Y~l 78 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRADG--SYSL 78 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--eEEe
Confidence 445555544 346899999999999999999999999987 5778777666 6766
No 58
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=73.94 E-value=1.6 Score=34.74 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=27.5
Q ss_pred CCCchhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHH
Q 022049 78 KLPADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLN 112 (303)
Q Consensus 78 ~l~~~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~ 112 (303)
+.+.+.|++|++|. .+.||. +|+.|||.++|++..
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 48 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKG 48 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTT
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHH
Confidence 45667778887664 678886 999999999999853
No 59
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=73.79 E-value=4.4 Score=32.28 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+.+|++.+.+. .+.|..|+|.+.|+|...+.+.|..|.+..
T Consensus 6 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 47 (144)
T 2cfx_A 6 IDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (144)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 455889999775 579999999999999999999999997653
No 60
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=73.58 E-value=1.8 Score=34.00 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=25.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtl 39 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAF 39 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHH
Confidence 456666555 467798 699999999999987543
No 61
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=73.18 E-value=27 Score=26.27 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee---ccccEEEEcChh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGDVLYVFPNN 144 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs---esGdIlYvFP~~ 144 (303)
..-+++..+......+|+.|+|...|++...+-+.|..|... |-++.. ++....|..+.+
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~--G~v~r~~~~~d~r~~~~~~~~ 89 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL--GFVRKVWIKGERKNYYEAVDG 89 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEECCTTCSSCEEEECCH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCceEEEeecch
Confidence 345678888534567999999999999999999999999875 566654 345577877755
No 62
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=73.13 E-value=7.9 Score=27.82 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aG----Lsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
..+..||+++.+ +..+|+.|++...+ ++...+..-|..|..+ |.++...+|.-.+..|
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k--Glv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK--GALNHHKEGRVFVYTP 70 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC--CCeEEEecCCEEEEEe
Confidence 456789999988 45799999998875 7899999999999876 5777767777433333
No 63
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.96 E-value=4.3 Score=33.86 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
+.+.+|++++++.+ +.|..|+|.+.|+|...+.+.|..|.++.
T Consensus 17 ~~d~~IL~~L~~~~-~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 17 DLDRNILRLLKKDA-RLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp HHHHHHHHHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34568999998754 79999999999999999999999996653
No 64
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=72.60 E-value=2.1 Score=33.03 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.4
Q ss_pred hhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..+++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t 48 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRST 48 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhh
Confidence 3456676665 45687 89999999999998653
No 65
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=72.46 E-value=22 Score=30.87 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
+|++++.+.+...|+.|+|.+.|++...+.+-|..|.+ .|-++-.++| -|.-
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~--~Y~l 63 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDK--RYVP 63 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEECCCC--cEEE
Confidence 57788877777899999999999999999999999987 4667665444 3554
No 66
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=72.10 E-value=4.9 Score=32.57 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+.+|++++.+.+ +.|..|+|.+.|+|...+.+-|..|-...
T Consensus 11 ~~~~il~~L~~~~-~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 11 TDIKILQVLQENG-RLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4568899887765 69999999999999999999999997653
No 67
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=72.01 E-value=3.9 Score=33.50 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
...+|++++++. .|+|..|+|.+.|+|...+.+-|..|-.+.
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456788888765 578999999999999999999999998876
No 68
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=71.69 E-value=12 Score=29.19 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEE
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYV 140 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYv 140 (303)
..|-+|+..+.+.| ..|++|+|...|++...+.+-|..|. ..|-++...+|. +.|.
T Consensus 42 ~~rl~IL~~L~~~~-~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~ 98 (122)
T 1u2w_A 42 ENRAKITYALCQDE-ELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGKLALYS 98 (122)
T ss_dssp HHHHHHHHHHHHSS-CEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC----CCEEE
T ss_pred HHHHHHHHHHHHCC-CcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEECCEEEEE
Confidence 44668888887654 58999999999999999999999998 357777777776 3444
No 69
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=71.62 E-value=4 Score=34.34 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
-|.+.+++.|+-.|+.|+|...|++...+.+-|.+|..+ |.|+.
T Consensus 13 ~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~--G~i~~ 56 (196)
T 3k2z_A 13 FIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK--GYIER 56 (196)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC--CCEEe
Confidence 344455678999999999999999999999999999775 44443
No 70
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=71.57 E-value=2.9 Score=31.17 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHH
Q 022049 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALA 122 (303)
Q Consensus 83 ~~~~im~Ave~~g~-rvTvgDVAa~aGLsl~eAe~aL~aLA 122 (303)
.=..++++++..|| +.++.++|...|++.+++++.|..|.
T Consensus 33 Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 33 LALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 33567899999999 78899999999999999999988765
No 71
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=71.22 E-value=2.2 Score=33.76 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=25.2
Q ss_pred hhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.||.+|+.|||.++|++....
T Consensus 16 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tl 51 (194)
T 2q24_A 16 NRDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTL 51 (194)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHH
Confidence 35566554 567899999999999999998654
No 72
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=70.94 E-value=2.2 Score=33.62 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=25.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~ 40 (190)
T 3vpr_A 3 TTRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAAL 40 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 345666555 6778885 89999999999997654
No 73
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=70.86 E-value=2.4 Score=32.82 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=25.7
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++|. .+.|+ .+|+.|||.++|++....
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 46 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTL 46 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHH
Confidence 34566776665 55686 799999999999997654
No 74
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=70.69 E-value=13 Score=28.86 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=51.4
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhh-cCCCHHHHHHHHHHHHhhcCCceEeecc-ccEEEEc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGK-AGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~-aGLsl~eAe~aL~aLAad~~G~LeVses-GdIlYvF 141 (303)
+.++..+|++.+++....+|-.|+++. .+++.++--++++.|.+ .|.|+.-.+ |.++|..
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~--~gkiel~K~~~~liYr~ 73 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLS--MGQLDLLRSNTGLLYRI 73 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHH--HTSEEEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH--cCCeEEEecCCeEEEEe
Confidence 567788999999999999999999976 56799999999999998 577887776 5588864
No 75
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=69.84 E-value=2.8 Score=33.66 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=27.2
Q ss_pred CCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 022049 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 79 l~~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.+...|++|++|. .+.|| .+|+.|||.++|++.-..
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 46 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTV 46 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHH
Confidence 3445677776664 56787 699999999999987643
No 76
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=69.27 E-value=16 Score=27.47 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 32 ~~~~iL~~l~~~~-~~~~~ela~~l~is~~~vs~~l~~L~~~--gli~~~ 78 (142)
T 3bdd_A 32 TRYSILQTLLKDA-PLHQLALQERLQIDRAAVTRHLKLLEES--GYIIRK 78 (142)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEec
Confidence 3456888888766 5999999999999999999999999987 555544
No 77
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=68.58 E-value=2.4 Score=34.50 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=26.1
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 80 ~~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
++..|++|++| +.+.||. +|+.|||.++|++...
T Consensus 3 ~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 41 (228)
T 3nnr_A 3 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGN 41 (228)
T ss_dssp -CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred CchHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCcc
Confidence 45667777666 4667986 9999999999999754
No 78
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=68.33 E-value=11 Score=30.45 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=48.6
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....=-+=-...+|...|..
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 3567888999999888889999999876 8999999999999998754332223456777875
No 79
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=68.19 E-value=31 Score=25.82 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|.++ |-++..
T Consensus 39 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~~--glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGETG-PCPQNQLGRLTAMDAATIKGVVERLDKR--GLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHTTCCHHHHHHHHHHHHHT--TCEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 3457899998777 7999999999999999999999999987 555543
No 80
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=68.09 E-value=2.7 Score=32.92 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=26.3
Q ss_pred chhhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.||.+|+.|||.++|++....
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tl 45 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSM 45 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHH
Confidence 4566777665 467898899999999999987543
No 81
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=68.01 E-value=15 Score=29.55 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=49.5
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....=-+=-..++|...|..-
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 356788999999988899999998764 89999999999999987654433345777888763
No 82
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=67.91 E-value=4 Score=36.52 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
+|++++.+.+..+|+.|+|.++||+...+-+-|..|.+. |.|+-.++| -|.-
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~--G~v~~~~~~--~Y~L 85 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL--DLLARSADG--TLRI 85 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT--TSEEECTTS--EEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEECCCC--cEEe
Confidence 468888888888999999999999999999999999865 667766655 4665
No 83
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=66.99 E-value=7.4 Score=29.49 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~-rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.++..+.+.+. .+|+.|+|...|++...+.+.|..|..+ |-++.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r 82 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK--KLLYR 82 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC--CCEEe
Confidence 35678999988765 7999999999999999999999999987 44443
No 84
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=66.92 E-value=2.9 Score=32.95 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 85 ~~im~Ave~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
+.+++.+.+.|| .+|+.|||.++|++....
T Consensus 14 ~aA~~lf~~~G~~~~t~~~IA~~agvs~~tl 44 (192)
T 2zcm_A 14 DNAITLFSEKGYDGTTLDDISKSVNIKKASL 44 (192)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCcccCCHHHHHHHhCCChHHH
Confidence 344555677898 599999999999997653
No 85
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=66.69 E-value=6.3 Score=34.31 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
+|++++.+.+...|+.|+|...|++...+.+-|..|... |.|+-.+++. -|.-
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~--G~v~~~~~~~-~Y~l 62 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE--FLVEALGPAG-GFRL 62 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT--TSEEECGGGC-EEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeCCCC-eEEE
Confidence 467777777778999999999999999999999999764 6676654322 3554
No 86
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=66.56 E-value=7.6 Score=30.29 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 86 RAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 86 ~im~Ave~~--g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
++|..+.+. +..+|+.|+|.+.|+|...+++.|..|... |-++..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~--Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA--GLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC--CceEec
Confidence 345555544 567999999999999999999999999874 345543
No 87
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=66.29 E-value=6.9 Score=29.95 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+-.|+..+...+ +|++|+|...|++...+.+.|..|..+.
T Consensus 39 ~~~~iL~~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~~~G 79 (146)
T 3tgn_A 39 TQEHILMLLSEES--LTNSELARRLNVSQAAVTKAIKSLVKEG 79 (146)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4567899998877 9999999999999999999999998763
No 88
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=65.61 E-value=2.5 Score=33.49 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.3
Q ss_pred hhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.||.+|+.|||.++|++....
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~ 52 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSATL 52 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHH
Confidence 45666665 457899999999999999997654
No 89
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=65.33 E-value=5.4 Score=30.63 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc-----CCceEeecccc
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT-----DGFLEVSDEGD 136 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~-----~G~LeVsesGd 136 (303)
.|++++. .| ++..++|..+||+-..+++.|..|.... .+....|+.|.
T Consensus 12 ~IL~~i~-~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~ 64 (95)
T 1r7j_A 12 AILEACK-SG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGE 64 (95)
T ss_dssp HHHHHHT-TC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHHHH-cC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECCeeEEChhHH
Confidence 4566665 23 9999999999999999999999998753 33344444443
No 90
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=65.32 E-value=3.4 Score=32.23 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=24.6
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPML 51 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHH
Confidence 45666555 566797 899999999999997653
No 91
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=65.13 E-value=11 Score=28.72 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 41 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--glv~r~ 87 (147)
T 1z91_A 41 PQYLALLLLWEHE-TLTVKKMGEQLYLDSGTLTPMLKRMEQQ--GLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHTTTCCHHHHHHHHHHHHHH--TSEECC
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCcCcHHHHHHHHHHC--CCEEec
Confidence 4567899998876 7999999999999999999999999988 555543
No 92
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=65.04 E-value=8.2 Score=29.94 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~r~ 87 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER--GLVVRT 87 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT--TSEEC-
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 456788899888878999999999999999999999999876 555543
No 93
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=64.91 E-value=3.4 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=25.7
Q ss_pred chhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
.+.|++|++|. .+.||. +|+.|||.++|++....
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 54 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLI 54 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHH
Confidence 34667776665 556985 99999999999987543
No 94
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=64.76 E-value=2 Score=34.45 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=26.8
Q ss_pred CCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 79 l~~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
++|+.|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 2 ~~~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~Agvskgt 41 (202)
T 2id6_A 2 HMLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGL 41 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHH
T ss_pred CchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 3466777787665 56787 69999999999998643
No 95
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=64.58 E-value=4.2 Score=31.30 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=24.8
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++|. .+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGT 44 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 4566666655 577986 9999999999998754
No 96
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=64.47 E-value=3.1 Score=32.32 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMI 45 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHH
Confidence 355666554 577898 899999999999998654
No 97
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=64.15 E-value=15 Score=33.49 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=53.8
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee-ccccEEEEcChhhHHHH
Q 022049 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-DEGDVLYVFPNNYRAKL 149 (303)
Q Consensus 76 ~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs-esGdIlYvFP~~fRs~l 149 (303)
|.-|-.+++-.|.+.+.+.++.+|+.|+|+++|++..-.++=|+.|++ -|-|++. +.|+-.|.=...-+.-|
T Consensus 22 s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~~~~~~~y~~t~~s~~~l 94 (353)
T 4a6d_A 22 SQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVS--LKLLKVETRGGKAFYRNTELSSDYL 94 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHH--CCCEEEeccCccceeeCCHHHHHHh
Confidence 333445566678888888888899999999999999999888888886 4667654 56677887665444433
No 98
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=64.13 E-value=48 Score=25.65 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.||..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 45 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALFG-PKKMKEIAEFLSTTKSNVTNVVDSLEKR--GLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 4567899998877 6999999999999999999999999987 555543
No 99
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=64.08 E-value=8.2 Score=32.33 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=38.8
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+.+|++.+.+.+..+|+.|+|.+.|+|...+++.|..|-+ .|-.++.+
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~-~G~~I~~~ 70 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVAT 70 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEE
Confidence 4567888887777799999999999999999999999976 33335543
No 100
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=64.00 E-value=12 Score=28.47 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+. +..+|+.|+|...|++...+.+.|..|.++ |-++..
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 83 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEM--GLVVRV 83 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHC--CCEEee
Confidence 4567788887 667999999999999999999999999988 566544
No 101
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=63.97 E-value=5.9 Score=33.99 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=49.1
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEE
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYv 140 (303)
++.+.-+++++-|-+.|.-+|+.-|+.+-.++...|+++|+.|.+..-=.+=+....-.||.
T Consensus 45 fDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 45 IEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp CCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred ecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 34666778888888887889999999999999999999999999875444334445667776
No 102
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=63.91 E-value=45 Score=25.17 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.||..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~~la~~l~~s~~tvs~~l~~L~~~--glv~r~ 80 (145)
T 2a61_A 34 AQFDILQKIYFEG-PKRPGELSVLLGVAKSTVTGLVKRLEAD--GYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 3567888888765 5999999999999999999999999987 555554
No 103
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=63.69 E-value=3.6 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=24.6
Q ss_pred hhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAI 51 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceee
Confidence 45556554 5678986 99999999999997654
No 104
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=63.60 E-value=12 Score=25.43 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe--eccccEEEEc
Q 022049 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV--SDEGDVLYVF 141 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV--sesGdIlYvF 141 (303)
.++.+++++.| |+.++|...|++-...-+-+. ....+.. ++.|+.+|.-
T Consensus 4 ~~l~~~~~~~g---s~~~~A~~lgis~~~vs~~~~-----~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 4 IPLSKYLEEHG---TQSALAAALGVNQSAISQMVR-----AGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp EEHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHH-----TTCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHcC---CHHHHHHHHCcCHHHHHHHHc-----CCCCCCeEEccCceEehHh
Confidence 35667788887 899999999999877766552 3334555 9999988864
No 105
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=63.52 E-value=37 Score=25.85 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=39.7
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
+-.++..+.+.+. |+.|+|...|++...+-+.|..|..+ |-++-..
T Consensus 39 ~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~--Glv~r~~ 84 (144)
T 3f3x_A 39 DFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAK--GLVRRIR 84 (144)
T ss_dssp HHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHC--CCEEecc
Confidence 4578899988877 99999999999999999999999998 6666543
No 106
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=63.32 E-value=3.7 Score=32.21 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=25.1
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 48 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGT 48 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchh
Confidence 3455666554 577898 69999999999998643
No 107
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=63.30 E-value=7.3 Score=30.92 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCceeehhhhh-hcCCCHHHHHHHHHHHHhhcCCceE
Q 022049 85 NRAMDAVDACNRRVTIGDVAG-KAGLKLNEAQKALQALAADTDGFLE 130 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa-~aGLsl~eAe~aL~aLAad~~G~Le 130 (303)
=.++-.+.+++ ..|++|+|. ..|++....-+.|..|..+ |-++
T Consensus 19 fsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~--GlVe 62 (95)
T 1bja_A 19 ATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKK--GLVE 62 (95)
T ss_dssp HHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHC--CCee
Confidence 45778888888 899999999 9999999999999999998 7787
No 108
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=63.19 E-value=9.9 Score=29.25 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~~vs~~l~~Le~~--Glv~r~ 87 (152)
T 3bj6_A 41 GQRAILEGLSLTP-GATAPQLGAALQMKRQYISRILQEVQRA--GLIERR 87 (152)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeeec
Confidence 4567889998876 6999999999999999999999999887 455543
No 109
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=63.17 E-value=6.6 Score=28.95 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHH-HHHHHHHHHhhcCCceE
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNE-AQKALQALAADTDGFLE 130 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~e-Ae~aL~aLAad~~G~Le 130 (303)
.++..+.+.|+.+|+.|+|...|++... +-+.|..|..+ |.++
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~--Glv~ 62 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA--GLVK 62 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT--TSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC--CCee
Confidence 3566778888789999999999999999 99999999876 5565
No 110
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=63.14 E-value=4.2 Score=31.70 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.6
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++|. .+.||. +|+.|||.++|++....
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 54 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATV 54 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHH
Confidence 4566776654 567987 99999999999997543
No 111
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.06 E-value=49 Score=25.33 Aligned_cols=46 Identities=7% Similarity=0.167 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 39 ~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 84 (155)
T 1s3j_A 39 QLFVLASLKKHG-SLKVSEIAERMEVKPSAVTLMADRLEQK--NLIART 84 (155)
T ss_dssp HHHHHHHHHHHS-EEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeec
Confidence 456888888765 6999999999999999999999999887 566554
No 112
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=63.06 E-value=3.1 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=22.9
Q ss_pred chhhHHHHHHH-----HhcC-CceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV-----DACN-RRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av-----e~~g-~rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++|. .+.| ..+|+.|||.++|++....
T Consensus 23 ~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 62 (212)
T 3nxc_A 23 RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAAL 62 (212)
T ss_dssp CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHH
Confidence 34578888873 3447 4699999999999997643
No 113
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=62.97 E-value=11 Score=29.04 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 022049 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (303)
Q Consensus 83 ~~~~im~Ave~~g-~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~Le 130 (303)
.+-.|++.++..| ..+|..|+|.+++|+..++...|..|-. -|-++
T Consensus 21 ~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp SHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 4578899999865 4899999999999999999999999966 46666
No 114
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=62.97 E-value=11 Score=28.67 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g-~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...+ ..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 80 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK--KLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 4567899998887 78999999999999999999999999887 556544
No 115
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=62.80 E-value=4.3 Score=31.61 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=24.9
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 11 ~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 48 (196)
T 3he0_A 11 DKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTI 48 (196)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchH
Confidence 445566555 5677976 99999999999987643
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=62.78 E-value=7.5 Score=31.74 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=40.2
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCC---CHHH-HHHHHHHHHhhc---CCceEee
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNE-AQKALQALAADT---DGFLEVS 132 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGL---sl~e-Ae~aL~aLAad~---~G~LeVs 132 (303)
.++|++|++.++ +.-.|+.|+|...|+ +..+ +-..|..+|.-. |..|.|.
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~ 66 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIK 66 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEEC
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 478999999998 688999999999999 7777 888888888655 3345444
No 117
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=62.77 E-value=34 Score=30.28 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
.+.+...++..++.++..|++..+|++.++.++.|..|.+... -+.+..+++..| +..++
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~-~~~~~ 63 (258)
T 1lva_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQ-VTLLRVENDLYA-ISTER 63 (258)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEEETTEEEE-EEHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCC-EEEeccCCccEE-EcHHH
Confidence 3556777888888877799999999999999999999886544 455543344334 44443
No 118
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=62.70 E-value=49 Score=25.19 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+.+.+ .+|+.|+|...|++...+.+.|..|.++ |-++..
T Consensus 43 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 89 (150)
T 2rdp_A 43 PQFVALQWLLEEG-DLTVGELSNKMYLACSTTTDLVDRMERN--GLVARV 89 (150)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 4567889998876 6999999999999999999999999988 555553
No 119
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=62.42 E-value=4 Score=31.75 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=22.9
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl 111 (303)
..|++|++| +.+.|| .+|+.|||.++|++.
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCG
T ss_pred cCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 345566555 566888 799999999999974
No 120
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.85 E-value=11 Score=28.84 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=38.8
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+-.++..+.+.+..+|+.|+|...|++...+.+.|..|.++ |-++..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~--glv~r~ 83 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG--GLIVRH 83 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCEeeC
Confidence 34678888874557999999999999999999999999987 455443
No 121
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=61.77 E-value=3.7 Score=31.75 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=25.2
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (196)
T 3col_A 10 NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNV 47 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHH
Confidence 456666655 456788 799999999999997653
No 122
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=60.91 E-value=13 Score=28.59 Aligned_cols=46 Identities=13% Similarity=0.348 Sum_probs=39.4
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+-.++..+...| .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 42 ~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 87 (148)
T 3nrv_A 42 EWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEK--KYIEVN 87 (148)
T ss_dssp HHHHHHHHHHSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 456888998877 8999999999999999999999999988 666554
No 123
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=60.80 E-value=4.5 Score=31.64 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=25.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tl 45 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNF 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHH
Confidence 455666555 567887 799999999999997654
No 124
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.79 E-value=50 Score=24.70 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.++..+.+.+. +|+.|+|...|++...+.+.|..|..+ |-++.
T Consensus 37 ~~~~iL~~l~~~~~-~t~~ela~~l~~s~~~vs~~l~~Le~~--glv~r 82 (142)
T 2fbi_A 37 QQWRVIRILRQQGE-MESYQLANQACILRPSMTGVLARLERD--GIVRR 82 (142)
T ss_dssp HHHHHHHHHHHHCS-EEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEe
Confidence 35568889988764 999999999999999999999999987 44444
No 125
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=60.67 E-value=11 Score=30.26 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--GlV~r~ 101 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK--GLISRQ 101 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC--CCEEee
Confidence 356789999887778999999999999999999999999886 555544
No 126
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=60.59 E-value=13 Score=30.91 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCC-HHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLK-LNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLs-l~eAe~aL~aLAad~~G~LeVs 132 (303)
.-+++-++.++.|+..|..|+|...|++ ...+.+-+..|+.. |.|++.
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~--~~l~~~ 59 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK--GVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC--CCceeC
Confidence 4456777778888888999999999999 88888888888874 466654
No 127
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=60.35 E-value=4 Score=32.22 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 63 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTL 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHH
Confidence 3456666655 567797 899999999999987644
No 128
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=60.12 E-value=4.9 Score=31.00 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=23.1
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHH
Q 022049 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 82 ~~~~~im~----Ave~~g~-rvTvgDVAa~aGLsl~ 112 (303)
..|++|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 41 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKG 41 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSC
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCch
Confidence 34555554 4567887 6999999999998753
No 129
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=60.05 E-value=3.4 Score=33.12 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||.+|+.|||.++|++....
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~ti 48 (224)
T 1t33_A 12 QAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAI 48 (224)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHH
Confidence 345566554 567898899999999999997643
No 130
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=59.85 E-value=3.8 Score=36.22 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=39.0
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecc-ccEEEEc
Q 022049 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (303)
Q Consensus 87 im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVses-GdIlYvF 141 (303)
|++++.+.+..+|+.|+|.++||+...+-+-|..|.+. |-|+-.++ |. |.-
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~--G~v~~~~~~~~--Y~l 62 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA--GFVEQVEGARS--YRL 62 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEECSSSSE--EEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEcCCCCc--EEc
Confidence 45555555678999999999999999999999999865 56665544 43 655
No 131
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=59.70 E-value=4.8 Score=31.23 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 9 ~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tl 47 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSF 47 (197)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhH
Confidence 3466677665 456788 699999999999987543
No 132
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.60 E-value=23 Score=28.90 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=49.0
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....--+=-...+|...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3456788999999888889999999765 8999999999999998765443333467777875
No 133
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=59.44 E-value=5.3 Score=31.69 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t 47 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKAS 47 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHH
Confidence 4456666665 577898 59999999999998754
No 134
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=59.42 E-value=3.1 Score=31.00 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCeEeeecccCccCCC
Q 022049 274 KLIGEYIASNGGVVTAEELAPYLDID 299 (303)
Q Consensus 274 q~Ig~~Ir~N~GvV~AEQlAPyLD~~ 299 (303)
+.+..|||+|||++..+.++..++..
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~ 38 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVE 38 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCC
Confidence 45899999999999999888777654
No 135
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.36 E-value=19 Score=28.71 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 81 ~~~~~~im~Ave~~g-~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
...|..|++++.+.+ .-+|+.||.... ++++..+=+.|..|....=-+=-..++|...|..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 457788999999887 789999999775 8999999999999998764432222367778875
No 136
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=59.14 E-value=11 Score=28.88 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCCchhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHH
Q 022049 77 DKLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKAL 118 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL 118 (303)
+.+..+.-.++++.++++ ....|+.|+|...|+|...-++.+
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~f 44 (120)
T 3mkl_A 2 NALQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKL 44 (120)
T ss_dssp ---CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHH
Confidence 445666778889999777 668999999999999987665443
No 137
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=58.78 E-value=65 Score=25.62 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=41.2
Q ss_pred HHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHH
Q 022049 85 NRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (303)
Q Consensus 85 ~~im~Ave~~----g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs 147 (303)
..+.+.+... |-++ |..++|.+-|+|.+.++++|..|.++ |-++.. .|-=.|+=+.+...
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~--Gli~~~-~g~G~~V~~~~~~~ 75 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEA--GILYKK-RGIGMFVSAQAPAL 75 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT--TSEEEE-TTTEEEECTTHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEe-cCCEEEEecCchHh
Confidence 3444444443 4455 88999999999999999999999877 556544 34445665554443
No 138
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=58.72 E-value=5.1 Score=31.66 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=25.2
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...+++|++| +.+.|| .+|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 53 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRT 53 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcch
Confidence 4556666665 566788 59999999999998653
No 139
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=58.58 E-value=5.1 Score=31.58 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.2
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...+++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 51 (212)
T 3knw_A 13 EAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSF 51 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHH
Confidence 3566777665 467787 799999999999997654
No 140
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.53 E-value=13 Score=28.22 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...+..+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~--glv~r~ 85 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ--GLVRRL 85 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCeeec
Confidence 345788898445667999999999999999999999999976 445443
No 141
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=58.41 E-value=5.2 Score=31.46 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=25.9
Q ss_pred CchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 80 ~~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
....+++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t 52 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSAL 52 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhh
Confidence 345567776654 56688 79999999999999754
No 142
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=58.41 E-value=21 Score=27.08 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=39.0
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+-.+|..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 31 ~~~iL~~l~~~~-~~t~~~la~~l~~s~~~vs~~l~~Le~~--gli~r~ 76 (144)
T 1lj9_A 31 QYLYLVRVCENP-GIIQEKIAELIKVDRTTAARAIKRLEEQ--GFIYRQ 76 (144)
T ss_dssp HHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHCc-CcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 456888888876 7999999999999999999999999988 555543
No 143
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=58.24 E-value=5.2 Score=31.29 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=25.2
Q ss_pred CchhhHHHHHHH----HhcCCc-eeehhhhhhcCCCH
Q 022049 80 PADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKL 111 (303)
Q Consensus 80 ~~~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl 111 (303)
..+.|++|++|. .+.||. +|+.|||.++|++.
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCc
Confidence 456777777665 467875 99999999999975
No 144
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=58.23 E-value=4.2 Score=31.52 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=21.7
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~ 112 (303)
...|++|++| +.+.||. +|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 47 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHA 47 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChH
Confidence 3456677665 4567886 899999999998753
No 145
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=57.93 E-value=5.5 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=25.7
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 44 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSY 44 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHH
Confidence 3456667665 4667886 99999999999987543
No 146
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=57.91 E-value=36 Score=26.96 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.5
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 94 ~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
-|.++ |..++|.+-|+|...++++|..|.++ |-|+.. .|-=.|+=+
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~--Gli~~~-~g~G~~V~~ 77 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEAQ--KVIRTI-PGKGTFITG 77 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECS
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe-cCCeEEEcc
Confidence 35567 99999999999999999999999876 445443 333345544
No 147
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=57.88 E-value=12 Score=30.22 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhc--CCceeehhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeeccccEE
Q 022049 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVL 138 (303)
Q Consensus 82 ~~~~~im~Ave~~--g~rvTvgDVAa~aGLs--l~eAe~aL~a--LAad~~G~LeVsesGdIl 138 (303)
+.+.+|.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++-...||==|..+|.+-
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~ 65 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKIS 65 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCS
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCC
Confidence 5788999999998 5668889999999974 3444444444 344579999999999985
No 148
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=57.81 E-value=5.2 Score=31.69 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=23.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl 111 (303)
..|++|++| +.+.||. +|+.|||.++|++.
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~ 47 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRR 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCH
Confidence 356666665 4678885 99999999999985
No 149
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=57.73 E-value=4.8 Score=30.99 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSL 40 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchh
Confidence 456666665 457888 59999999999999754
No 150
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=57.59 E-value=6.5 Score=30.97 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...+++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
Confidence 3456666655 566797 599999999999997654
No 151
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=57.52 E-value=6.4 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (216)
T 3s5r_A 10 NTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMI 47 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHH
Confidence 445666555 5778976 99999999999997654
No 152
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=57.32 E-value=5.5 Score=31.49 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=22.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl 111 (303)
..|++|++| +.+.||. +|+.|||.++|++.
T Consensus 19 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 53 (216)
T 3qqa_A 19 ARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSY 53 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCH
Confidence 345555554 5678876 99999999999874
No 153
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=57.27 E-value=6.6 Score=31.10 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=24.2
Q ss_pred hhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~----Ave~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++ .+.+.|| .+|+.|||.++|++....
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 41 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGL 41 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHH
Confidence 4555554 4567788 699999999999997543
No 154
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.21 E-value=15 Score=22.57 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=30.6
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHH
Q 022049 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 78 ~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
+|+++.+..|+...+ ...|..+||...|++...+.+-+..
T Consensus 5 ~l~~~~~~~i~~~~~---~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL---LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 567777777776553 3469999999999999999877653
No 155
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=57.15 E-value=68 Score=25.11 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChh
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~ 144 (303)
.|+..+... +..|+.|+|...|++...+.+.|..|..+ |-++... |.-+|.=+.+
T Consensus 44 ~i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~--Glv~r~~-~~~~~lT~~g 98 (155)
T 2h09_A 44 LISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRLATM--GLIEMIP-WRGVFLTAEG 98 (155)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TCEEEET-TTEEEECHHH
T ss_pred HHHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHC--CCEEEec-CCceEEChhH
Confidence 334455554 45899999999999999999999999988 5665543 3345544443
No 156
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=57.00 E-value=5.3 Score=32.87 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=26.2
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tl 81 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTF 81 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHH
Confidence 3556666665 456798 899999999999997643
No 157
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=56.96 E-value=65 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=31.8
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecc
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVses 134 (303)
+..+|+.|+|...|++...+.+.|..|..+ |-++-..+
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~--Glv~r~~~ 57 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKD--EYLIYEKY 57 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEeeC
Confidence 456999999999999999999999999874 66665543
No 158
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=56.96 E-value=5.5 Score=31.84 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~----Ave~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++ .+.+.|| .+|+.|||..+|++....
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~ 60 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTL 60 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHH
Confidence 34555555 4567897 799999999999997653
No 159
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=56.19 E-value=5.9 Score=30.54 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
+.|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t 46 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTAS 46 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcch
Confidence 456777665 4678885 9999999999999754
No 160
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=56.12 E-value=5.8 Score=31.68 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
+..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 2 ~~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t 39 (212)
T 3rh2_A 2 MKTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGN 39 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 3455666554 5678987 9999999999999754
No 161
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=56.09 E-value=7.1 Score=31.05 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...+++|++| +.+.|| .+|+.|||.++|++....
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~ 67 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSF 67 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchh
Confidence 4556676655 466887 799999999999987543
No 162
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=56.04 E-value=5.8 Score=31.89 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=24.6
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 44 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQL 44 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 455666655 456788 89999999999999754
No 163
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=56.04 E-value=5.4 Score=31.13 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=26.2
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 54 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTL 54 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHH
Confidence 4566777665 4567885 99999999999997643
No 164
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=56.01 E-value=8.9 Score=35.97 Aligned_cols=39 Identities=8% Similarity=0.242 Sum_probs=35.4
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHH
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLA 122 (303)
+..|++.+.+.+..+|+.|++..||+..+++-.+|+.|-
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 467899999999999999999999999999999998873
No 165
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=55.96 E-value=5.4 Score=31.57 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 45 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGS 45 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchh
Confidence 445666555 567788 79999999999998654
No 166
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=55.88 E-value=6.3 Score=31.03 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=26.2
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++|. .+.|+ .+|+.|||.++|++....
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 55 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNL 55 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHH
Confidence 45677777764 56686 789999999999997643
No 167
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=55.78 E-value=3.1 Score=32.67 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=25.6
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 50 (215)
T 3e7q_A 13 EQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGL 50 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 34566776665 56787 89999999999999754
No 168
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=55.73 E-value=13 Score=28.43 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...+. +|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 32 ~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 78 (145)
T 3g3z_A 32 NLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQ--GLIEWQ 78 (145)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeec
Confidence 45678899988875 999999999999999999999999886 555543
No 169
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=55.38 E-value=6.2 Score=31.27 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=31.6
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH------HHHHH-HHHhhc
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA------QKALQ-ALAADT 125 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~eA------e~aL~-aLAad~ 125 (303)
...|++|++|. .+.|| .+|+.|||.++|++.... +.+|. ++..+.
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~~~~~~ 67 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSA 67 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCCCHHHHHHHHHHHh
Confidence 34567777664 56787 699999999999998754 55555 344333
No 170
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=54.83 E-value=6.2 Score=31.53 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gt 48 (205)
T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGG 48 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcch
Confidence 456667665 456798 69999999999998754
No 171
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.81 E-value=64 Score=24.06 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.+|..+.+. ..+|+.|+|...|++...+.+.|..|.++ |-++.
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~--glv~~ 75 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEES--GFIER 75 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 456688888876 56999999999999999999999999987 55554
No 172
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=54.78 E-value=14 Score=29.42 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 46 ~~~~iL~~L~~~~-~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r 91 (168)
T 2nyx_A 46 PQFRTLVILSNHG-PINLATLATLLGVQPSATGRMVDRLVGA--ELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 3457889998876 6999999999999999999999999887 55544
No 173
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=54.56 E-value=6.6 Score=30.49 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=23.8
Q ss_pred hhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~----Ave~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
.|++|++ .+.+.|+. +|+.|||.++|++....
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 8 TRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHH
Confidence 4555554 45677865 89999999999987544
No 174
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=54.53 E-value=3.4 Score=32.61 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=24.3
Q ss_pred hHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 84 RNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 84 ~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t 44 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAA 44 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHH
Confidence 66666654 77888 79999999999998754
No 175
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=54.40 E-value=56 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~ 80 (139)
T 3bja_A 34 VQFGVIQVLAKSG-KVSMSKLIENMGCVPSNMTTMIQRMKRD--GYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHCSSCCTTHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhHHHHHHHHHHHC--CCeeec
Confidence 4557888997765 6999999999999999999999999988 555543
No 176
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=54.38 E-value=7.3 Score=30.44 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t 47 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGA 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchh
Confidence 3456666555 467787 59999999999999753
No 177
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.36 E-value=27 Score=28.47 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=48.3
Q ss_pred CchhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 80 PADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g-~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
....|..|++++.+.+ .-+|+.||.... ++++..+=+.|..|....--+=-..++|...|..
T Consensus 15 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3567888999998877 789999999765 8999999999999998754332223467788875
No 178
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=54.31 E-value=56 Score=25.16 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 44 ~~~~iL~~l~~~~-~~t~~ela~~l~i~~~tvs~~l~~Le~~--Glv~r~ 90 (155)
T 3cdh_A 44 PEWRVLACLVDND-AMMITRLAKLSLMEQSRMTRIVDQMDAR--GLVTRV 90 (155)
T ss_dssp HHHHHHHHHSSCS-CBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEec
Confidence 3456888887765 6999999999999999999999999987 555543
No 179
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=54.30 E-value=76 Score=24.83 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 83 VRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 83 ~~~~im~Ave~~----g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
+-..+.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-|+.. .|-=.|+=+
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~-~g~G~~V~~ 79 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA--GYIYAK-RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CeEEEe-cCCEEEEec
Confidence 344555555543 4455 68999999999999999999999986 456544 333344444
No 180
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=54.30 E-value=3.7 Score=36.03 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=40.8
Q ss_pred HhcCCceeehhhhhhcCCCHHHHHHHHH--------------HHHhhcC-------CceEeeccccEEEEcChhhHHHHh
Q 022049 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTD-------GFLEVSDEGDVLYVFPNNYRAKLA 150 (303)
Q Consensus 92 e~~g~rvTvgDVAa~aGLsl~eAe~aL~--------------aLAad~~-------G~LeVsesGdIlYvFP~~fRs~l~ 150 (303)
+....++|+.|||..+|+|...+-++|+ +.|.+.| ..|.-..++-|.++.|.. .
T Consensus 5 ~~~~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~-----~ 79 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSL-----S 79 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCS-----S
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCC-----C
Confidence 3445689999999999999999988773 3343322 234444566788888752 3
Q ss_pred hhhHHHhHHHHHHHH
Q 022049 151 AKSFRLKVEPVIDKA 165 (303)
Q Consensus 151 ~Ks~r~rlq~~~~k~ 165 (303)
+.+|..-++.+-+.+
T Consensus 80 ~~~~~~~~~gi~~~a 94 (344)
T 3kjx_A 80 NMVFPEVLTGINQVL 94 (344)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 444444444443333
No 181
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=54.19 E-value=5.7 Score=32.05 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt 44 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGT 44 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhH
Confidence 456666655 467898 59999999999999754
No 182
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=54.17 E-value=21 Score=32.57 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
+.+.+|++.+. .+..+|+.|+|.+.|+|...+++.|..|.. .|.+..+..|. =|...
T Consensus 5 ~r~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~--~G~~i~~~~g~-GY~l~ 61 (321)
T 1bia_A 5 TVPLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTLRD--WGVDVFTVPGK-GYSLP 61 (321)
T ss_dssp HHHHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCCCEEETTT-EEECS
T ss_pred hHHHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCcEEEecCC-CcEEe
Confidence 45667888885 567899999999999999999999999976 44454555555 46663
No 183
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=54.05 E-value=6.5 Score=30.48 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 44 (183)
T 1zk8_A 8 LTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPS 44 (183)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchH
Confidence 345666665 4566875 9999999999998754
No 184
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=54.03 E-value=6.8 Score=30.16 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=25.3
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASI 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHH
Confidence 556666554 567887 599999999999997654
No 185
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=53.92 E-value=5.6 Score=30.93 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=36.5
Q ss_pred hHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 84 RNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 84 ~~~im~Ave~~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
+.+|+..+ +-|.++ |..++|.+-|+|...++++|..|.++ |-++...
T Consensus 30 ~~~I~~~l-~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~--GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEEL-DGNEGLLVASKIADRVGITRSVIVNALRKLESA--GVIESRS 77 (102)
T ss_dssp HHHHTTSS-BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHhhh-cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEe
Confidence 55555222 345666 99999999999999999999999987 4576665
No 186
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=53.89 E-value=14 Score=37.60 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=49.2
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcC-------CCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAG-------LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aG-------Lsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
.....+|++.++.. +.||+.++|..-| .+..-|+..|..+.. .|.|=+.++.+=+|.||.-|
T Consensus 493 ~~~~~~il~l~~~~-g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~--eG~l~rDd~~~G~~yypNlf 561 (566)
T 1w7p_D 493 DVVKEKLVDLIGDN-PGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVD--EGDLLIDKQLSGIYYYKNSY 561 (566)
T ss_dssp HHHHHHHHHHHTTS-TTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECCS
T ss_pred hHHHHHHHHHHHhc-CCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 46778888888764 5799999999999 999999999998655 46666666555588888544
No 187
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=53.89 E-value=6.6 Score=31.22 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.||. +|+.|||.++|++.-.
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt 45 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGT 45 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHH
Confidence 345666655 4667885 9999999999998754
No 188
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=53.80 E-value=19 Score=31.51 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.1
Q ss_pred hHHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~---~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
-.|.++.++. .+..+|+.|+|.+.|++...+.+-|..|.+ .|.|+-.
T Consensus 13 ~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~ 62 (257)
T 2g7u_A 13 IERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS 62 (257)
T ss_dssp HHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 3455555554 456799999999999999999999999987 4566554
No 189
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=53.77 E-value=19 Score=27.41 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |-++...
T Consensus 38 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~~ 85 (142)
T 2bv6_A 38 PQFLVLTILWDES-PVNVKKVVTELALDTGTVSPLLKRMEQV--DLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHSS-EEEHHHHHHHTTCCTTTHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEeec
Confidence 4567888988766 5999999999999999999999999988 6665543
No 190
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=53.76 E-value=5.3 Score=32.55 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=24.9
Q ss_pred chhhHHHHHHH-----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDAV-----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~Av-----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...+++|++|. .+.|+ .+|+.|||.+||++...
T Consensus 18 ~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t 56 (185)
T 3o60_A 18 QKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRAT 56 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHH
Confidence 35567787774 44565 69999999999999643
No 191
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=53.66 E-value=5.9 Score=32.33 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.0
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 65 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGST 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchh
Confidence 56666555 567898 799999999999997643
No 192
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=53.58 E-value=3.6 Score=34.23 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=25.5
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 18 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 55 (251)
T 3npi_A 18 VSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMI 55 (251)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHH
Confidence 456666665 456687 799999999999997654
No 193
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=53.44 E-value=3.9 Score=29.39 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=24.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCeEeeecccCccCCCC
Q 022049 260 GEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDR 300 (303)
Q Consensus 260 GDGDPN~dlEerRwq~Ig~~Ir~N~GvV~AEQlAPyLD~~~ 300 (303)
|.-+|+ .+++++ +.|..++.+|++-++++|||--|+.+.
T Consensus 1 ~~~~~~-~m~~~~-~~IL~~L~~~~~~~s~~eLA~~lglsr 39 (67)
T 2heo_A 1 GSHMLS-TGDNLE-QKILQVLSDDGGPVAIFQLVKKCQVPK 39 (67)
T ss_dssp ---------CHHH-HHHHHHHHHHCSCEEHHHHHHHHCSCH
T ss_pred CCCCcc-cccHHH-HHHHHHHHHcCCCcCHHHHHHHHCcCH
Confidence 345676 344444 458899999888899999998888653
No 194
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=53.43 E-value=7.1 Score=32.07 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=25.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 39 ~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tl 76 (214)
T 2guh_A 39 QSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLI 76 (214)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHH
Confidence 455666554 5778986 99999999999997654
No 195
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=53.36 E-value=4 Score=31.85 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 51 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAI 51 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHH
Confidence 3456666655 6778986 99999999999997653
No 196
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.25 E-value=33 Score=32.82 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHH
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs 147 (303)
.++++.+..+-+-=-++|+.++|...|++.+++|+.|..+-.|..=+=.......+|+....+-|.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~ 366 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD 366 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh
Confidence 344444444444456899999999999999999999999999985444566666688888776555
No 197
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=53.12 E-value=6.7 Score=31.92 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.2
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 80 ~~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
....|++|++| +.+.||. +|+.|||.++|++....
T Consensus 33 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tl 72 (221)
T 3g7r_A 33 PSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATL 72 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 34567777665 4667875 99999999999987654
No 198
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=53.09 E-value=6.9 Score=31.25 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.4
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
+..|++|++|. .+.|| .+|+.|||.++|++....
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~ 47 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDAL 47 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHH
Confidence 45677787764 56787 589999999999997643
No 199
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=53.03 E-value=7.2 Score=31.13 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=23.9
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 83 ~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gt 43 (197)
T 2gen_A 8 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIGS 43 (197)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 45566554 567898 69999999999998754
No 200
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=52.97 E-value=19 Score=27.76 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++.
T Consensus 42 ~~~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTP-GISVADLTKRLIITGSSAAANVDGLISL--GLVVK 87 (154)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4457889998875 5999999999999999999999999886 55555
No 201
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=52.94 E-value=7 Score=31.34 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=26.0
Q ss_pred chhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...|++|++|. .+.||. +|+.|||..+|++....
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tl 49 (211)
T 3bhq_A 11 ARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTV 49 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 45566776654 567886 99999999999987543
No 202
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=52.81 E-value=7.9 Score=31.32 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=23.1
Q ss_pred hhhHHHHHHHH----hcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Ave----~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
+.|++|++|.. +.||. +|+.|||.++|++.-..
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtl 61 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSL 61 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchH
Confidence 56788877764 46875 89999999999997543
No 203
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=52.71 E-value=7.4 Score=31.02 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.8
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++|. .+.||. +|+.|||.++|++...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 50 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGS 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchh
Confidence 5566676554 567886 8999999999999754
No 204
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=52.68 E-value=69 Score=28.00 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHHHhhhhHHHhHHHH
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPV 161 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~l~~Ks~r~rlq~~ 161 (303)
+.+.+|++-++ -+-+|+.+||-..|||-.+|+-.|..|+.+ |-++-=+-|...|.==. .+ .+...+..+
T Consensus 11 erk~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE--G~V~~Vk~GK~ayw~L~------~s-~y~~kV~di 79 (165)
T 2vxz_A 11 VRLRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKE--GRVTRVAFGNVALVCLS------MD-QYRQLVDGM 79 (165)
T ss_dssp HHHHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEESC------HH-HHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhc--CceEEEEEccEEEEEec------HH-HHHHHHHHH
Confidence 35677888888 777999999999999999999999998875 44444567888887542 12 222266666
Q ss_pred HHHHhhh
Q 022049 162 IDKAKAA 168 (303)
Q Consensus 162 ~~k~w~v 168 (303)
++-+|+.
T Consensus 80 lrel~~~ 86 (165)
T 2vxz_A 80 IREVERL 86 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 205
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=52.42 E-value=7.6 Score=31.13 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=23.5
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHH
Q 022049 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 82 ~~~~~im~----Ave~~g~-rvTvgDVAa~aGLsl~ 112 (303)
..|++|++ .+.+.|| .+|+.|||.++|++..
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~ 63 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKG 63 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTT
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcc
Confidence 44566655 4567787 4999999999999864
No 206
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=52.39 E-value=33 Score=26.59 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCceeehhhhhhcCC-CHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGL-KLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGL-sl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
.|-+++... ...|+.+++..+|+ +-.++-.||==||.+ +.+++.++++.+|++.
T Consensus 14 ~VW~~L~~~-~~~s~~el~k~t~l~~d~el~lAiGWLaRE--dKI~~~~~~~~l~v~l 68 (77)
T 2l01_A 14 QIWEALNGT-EGLTQKQIKKATKLKADKDFFLGLGWLLRE--DKVVTSEVEGEIFVKL 68 (77)
T ss_dssp HHHHHHTTS-SCEEHHHHHHHHTCSCHHHHHHHHHHHHHT--TCEEEEEETTEEEEEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCCCCHHHHHHHHHHHhhc--CceEEEeeCCEEEEEe
Confidence 456777776 58999999999999 999999999999886 7899999999999864
No 207
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=52.35 E-value=7.9 Score=34.20 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=0.0
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHH
Q 022049 93 ACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 93 ~~g~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
....++|+.|||..+|+|...+-++|+
T Consensus 8 ~g~~~~ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ---------------------------
T ss_pred CCCCCCcHHHHHHHhCCCHHHHHHHHC
Confidence 445679999999999999999998886
No 208
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=52.33 E-value=16 Score=31.29 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee---cccc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGD 136 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs---esGd 136 (303)
..+.+|++.+. . ++.|+.|+|...|++...+.+-|..|..+ |-++.. ..|+
T Consensus 20 ~~~~~IL~~L~-~-~~~s~~eLA~~lglS~stv~~~l~~Le~~--GlI~~~~~~~~~~ 73 (192)
T 1uly_A 20 DTRRKILKLLR-N-KEMTISQLSEILGKTPQTIYHHIEKLKEA--GLVEVKRTEMKGN 73 (192)
T ss_dssp HHHHHHHHHHT-T-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEEEETT
T ss_pred HHHHHHHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccccc
Confidence 46678999997 3 58999999999999999999999999765 556554 4565
No 209
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=52.23 E-value=34 Score=27.67 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
...|..|++++.+.+ -+|+.||.... ++++..+=+.|..|+...=-+=-...+|...|...
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 456888999999988 89999997653 79999999999999988654433345677778753
No 210
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=52.10 E-value=13 Score=33.81 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=46.4
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhH
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fR 146 (303)
-...+-.|.+++.+.++..|+.|+|+++|++..-.++=|++|++- |-|+.. +| .|.-..--+
T Consensus 33 ~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~--g~l~~~-~~--~y~~t~~s~ 94 (363)
T 3dp7_A 33 RLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTI--GTILLE-ED--RYVLAKAGW 94 (363)
T ss_dssp HHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEE-TT--EEEECHHHH
T ss_pred HHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC--CCeEec-CC--EEecccchH
Confidence 334455577888776778999999999999999999999999874 677653 22 476665543
No 211
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.77 E-value=81 Score=24.39 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 53 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 99 (162)
T 3cjn_A 53 AKMRALAILSAKD-GLPIGTLGIFAVVEQSTLSRALDGLQAD--GLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEec
Confidence 4567888888765 6999999999999999999999999987 555543
No 212
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=51.59 E-value=7.6 Score=31.87 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~ 80 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSV 80 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhH
Confidence 456677665 4567886 99999999999987654
No 213
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=51.44 E-value=28 Score=28.35 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=44.3
Q ss_pred HHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe--ecccc--EEEEcChhhHH
Q 022049 89 DAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV--SDEGD--VLYVFPNNYRA 147 (303)
Q Consensus 89 ~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV--sesGd--IlYvFP~~fRs 147 (303)
..-++.....|+.++|...|++..++.+.|..|..+.-=.++. .++|. -.|.|-.-|..
T Consensus 43 ~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ek 105 (135)
T 2v79_A 43 MHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGK 105 (135)
T ss_dssp HHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHH
T ss_pred HHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHH
Confidence 3334445668999999999999999999999999986555532 34565 47777776665
No 214
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=51.05 E-value=27 Score=26.25 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--gli~r~ 81 (138)
T 1jgs_A 35 AQFKVLCSIRCAA-CITPVELKKVLSVDLGALTRMLDRLVCK--GWVERL 81 (138)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHCCChHHHHHHHHHHHHC--CCEEec
Confidence 3456888888765 5899999999999999999999999987 555553
No 215
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=50.81 E-value=38 Score=26.46 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
.|-+++...+ ..|+.+++..+|++-.++-.|+==||.+ +.+++.++...+|+..
T Consensus 12 ~VW~~L~~~~-~~s~~el~k~t~l~d~el~lAIGWLaRE--dKI~~~~~~~~l~v~L 65 (82)
T 2l02_A 12 KVWHALNEAD-GISIPELARKVNLSVESTALAVGWLARE--NKVVIERKNGLIEIYN 65 (82)
T ss_dssp HHHHHHHHCC-SBCHHHHHHHHTCCHHHHHHHHHHHHTT--TSEEEEEETTEEEEEE
T ss_pred HHHHHHhccC-CCCHHHHHHHhCCCHHHHHHHHHHHhcc--CceeEEeeCCEEEEEE
Confidence 4677888876 8999999999999999999999999876 6888888888888764
No 216
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=50.71 E-value=6.4 Score=32.77 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.7
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
.+.|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 42 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~t 79 (255)
T 3g1o_A 42 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT 79 (255)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHH
Confidence 45667776654 56788 79999999999999754
No 217
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=50.68 E-value=24 Score=33.01 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=49.0
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEcChhhHH
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFPNNYRA 147 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvFP~~fRs 147 (303)
+.....++++.+.+. ..+|+.+++...|+|-..|++.|..|... |.|+-...|- -+|.++.-++-
T Consensus 295 ~~~~~~~ll~~l~~~-p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~~~~ 360 (373)
T 2qc0_A 295 PKIYSHELVQVIFEQ-PYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVTL 360 (373)
T ss_dssp TTTCCHHHHHHHHHC-SEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHHH
T ss_pred cchhHHHHHHHHHhC-CcccHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEEecCCCceEEehHHHHHH
Confidence 334456778888765 46899999999999999999999999975 6776655554 78887776654
No 218
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=50.66 E-value=7.2 Score=31.27 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.||. +|+.|||.++|++.-.
T Consensus 9 ~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gt 45 (203)
T 2np5_A 9 TSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGA 45 (203)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHH
Confidence 345666555 4678886 9999999999998754
No 219
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=50.36 E-value=80 Score=23.89 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=51.5
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-cccEE
Q 022049 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVL 138 (303)
Q Consensus 76 ~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse-sGdIl 138 (303)
.+.|...+.+.-+..+.+.=-++|+..+|..-||+.+++|+-|..+..+..=+=.... +|-|.
T Consensus 9 ~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~ 72 (84)
T 1ufm_A 9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 72 (84)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEE
Confidence 4667778888888999998889999999999999999999999999888755545554 44443
No 220
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=50.24 E-value=8.2 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
...|++|++| +.+.||. +|+.|||.++|++...
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt 46 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGT 46 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 4556777666 4568885 9999999999998643
No 221
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=50.20 E-value=26 Score=26.78 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
..-++.++.+ .-|.+.|+|+.-||+..++-..++.|-++..=+==+.+.|.-||.=|..+
T Consensus 10 ~~Fi~yIk~~-Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE~ 69 (72)
T 1wi9_A 10 TEFINYIKKS-KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP 69 (72)
T ss_dssp HHHHHHHHHC-SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC
T ss_pred HHHHHHHHHc-CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHHh
Confidence 3445666554 45888899999999999999999999998865556778999999766543
No 222
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=49.83 E-value=9.2 Score=28.07 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=26.6
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHH
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe 115 (303)
+|. +.+|..++++.| .|+.++|.++|++.....
T Consensus 8 ~~~-~~ri~~~l~~~g--lT~~~LA~~~Gvs~stls 40 (74)
T 1neq_A 8 DWH-RADVIAGLKKRK--LSLSALSRQFGYAPTTLA 40 (74)
T ss_dssp SCC-HHHHHHHHHTTS--CCHHHHHHHHSSCHHHHH
T ss_pred CCC-HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHH
Confidence 343 688888888665 899999999999977664
No 223
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=49.78 E-value=12 Score=28.64 Aligned_cols=46 Identities=7% Similarity=0.131 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.++..+.+.| .+|++|+|...|++...+-+.|..|..+ |-++-
T Consensus 38 ~~~~vL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r 83 (142)
T 3ech_A 38 PDVHVLKLIDEQR-GLNLQDLGRQMCRDKALITRKIRELEGR--NLVRR 83 (142)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHC---CHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEee
Confidence 3457888888876 6999999999999999999999999886 45544
No 224
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=49.70 E-value=23 Score=27.35 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.||..+...+ .+|+.|+|...|++...+.+.|..|..+ |-++.
T Consensus 48 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r 93 (153)
T 2pex_A 48 PQYLVMLVLWETD-ERSVSEIGERLYLDSATLTPLLKRLQAA--GLVTR 93 (153)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEee
Confidence 4567888888765 5999999999999999999999999987 44444
No 225
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.70 E-value=18 Score=29.65 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=46.8
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEE
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYv 140 (303)
+.+.-+++++-|-+. .-+|+.-|+.+-.+....|+++|+.|.+..-=.+=+-...-.||.
T Consensus 44 Dk~t~dkl~KEVpk~-KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 44 DKATYDKLLSEVPKY-KQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp SSHHHHHHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred CHHHHHHHHHHccCC-eEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 456667888888886 449999999999999999999999999987554443344456664
No 226
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=49.63 E-value=4.4 Score=31.27 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=24.7
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
+.|++|++|. .+.||. +|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATL 45 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHH
Confidence 3466666654 566875 99999999999997654
No 227
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=49.54 E-value=4.9 Score=31.24 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 51 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGI 51 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHH
Confidence 345666655 5667885 89999999999998654
No 228
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=49.51 E-value=8.1 Score=30.86 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=24.3
Q ss_pred hhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGA 47 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHH
Confidence 4566776654 56787 59999999999998643
No 229
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=49.47 E-value=6.6 Score=34.17 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.3
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHH
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
++|+.|||..+|+|...+-++|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 589999999999999999888764
No 230
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=49.34 E-value=8.7 Score=31.28 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||..+|++.-.
T Consensus 9 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgt 45 (215)
T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGA 45 (215)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchh
Confidence 456666655 466798 79999999999998754
No 231
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=49.16 E-value=9.1 Score=31.43 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 13 ~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t 49 (231)
T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPL 49 (231)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 345666554 567898 79999999999998654
No 232
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=49.11 E-value=4.9 Score=31.37 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
+.|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 40 (189)
T 3geu_A 3 AMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASL 40 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 445666555 4566876 99999999999997543
No 233
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=48.59 E-value=45 Score=28.81 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=35.4
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-cccE
Q 022049 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDV 137 (303)
Q Consensus 93 ~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse-sGdI 137 (303)
+-|.+++..|+|.+-|+|...++++|..|.++ |-+++.. .|-.
T Consensus 45 ~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~--Glv~~~~~~G~~ 88 (237)
T 3c7j_A 45 PSGTALRQQELATLFGVSRMPVREALRQLEAQ--SLLRVETHKGAV 88 (237)
T ss_dssp CTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEETTTEEE
T ss_pred CCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCceE
Confidence 46888999999999999999999999999866 6677663 4433
No 234
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=48.41 E-value=8.9 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=25.0
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..+++|++| +.+.||. +|+.|||.++|++....
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~ 77 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTV 77 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHH
Confidence 456666655 5667986 99999999999997643
No 235
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=48.30 E-value=9 Score=31.34 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhcCCc-eeehhhhhhcCCCHHH
Q 022049 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 83 ~~~~im~Ave~~g~r-vTvgDVAa~aGLsl~e 113 (303)
.-+.+++.+.+.||. +|+.|||.++|++...
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 66 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSS 66 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhH
Confidence 345556666778985 9999999999999754
No 236
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=48.17 E-value=35 Score=26.40 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aG----Lsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
..+..||+.+-+.| .+|+.||+...+ ++...+..-|..|..+ |-++...+|.--..+|
T Consensus 35 ~~e~~VL~~L~~~~-~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K--GlV~R~~~gR~~~Y~p 96 (99)
T 2k4b_A 35 NAELIVMRVIWSLG-EARVDEIYAQIPQELEWSLATVKTLLGRLVKK--EMLSTEKEGRKFVYRP 96 (99)
T ss_dssp CSCSHHHHHHHHHS-CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC--CCEEEEeCCCEEEEEE
Confidence 35578999998866 699999999876 6788998999999875 5677777777444444
No 237
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=48.16 E-value=9.9 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=24.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~ 112 (303)
..|++|++| +.+.|| .+|+.|||.++|++..
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~ 49 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSKS 49 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcC
Confidence 456777664 567887 5999999999999853
No 238
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=48.13 E-value=24 Score=30.96 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=47.9
Q ss_pred hHHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc-ChhhH---HHHhhhhHHH
Q 022049 84 RNRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF-PNNYR---AKLAAKSFRL 156 (303)
Q Consensus 84 ~~~im~Ave~---~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF-P~~fR---s~l~~Ks~r~ 156 (303)
=.|.++.++- .+...|+.|+|.+.|++...+.+-|..|.+. |.|+-. +| -|.- |+-++ ..+.+..+..
T Consensus 20 l~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~--G~v~~~-~~--~Y~Lg~~~~~lg~~~~~~~~l~~ 94 (265)
T 2ia2_A 20 LARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL--GYVATD-GS--AFWLTPRVLELGYSYLSSLSLPE 94 (265)
T ss_dssp HHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEES-SS--EEEECGGGGGTTHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEec-CC--EEEEcHHHHHHHHHHHhcCCHHH
Confidence 3455555554 3467999999999999999999999999874 555543 23 4554 22221 2223334455
Q ss_pred hHHHHHHHH
Q 022049 157 KVEPVIDKA 165 (303)
Q Consensus 157 rlq~~~~k~ 165 (303)
..++.++.+
T Consensus 95 ~a~p~l~~L 103 (265)
T 2ia2_A 95 VAQPHLEKL 103 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 239
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=48.08 E-value=9.1 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 47 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQAN 47 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHH
Confidence 355666655 456786 69999999999999764
No 240
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=47.87 E-value=5.5 Score=31.15 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.||. +|+.|||.++|++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 56 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGT 56 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhH
Confidence 456666665 4666885 9999999999999754
No 241
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=47.87 E-value=13 Score=28.87 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChh
Q 022049 82 DVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (303)
Q Consensus 82 ~~~~~im~Ave~~----g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~ 144 (303)
.+-..+.+.+... |.++ |..++|.+-|+|...++++|..|.++. -|+... |-=.|+=+..
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G--li~~~~-~~G~~V~~~~ 77 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDN--VIEKRR-GLGMLVKAGA 77 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT--SEEEET-TTEEEECTTH
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEEec-CCeEEEeCCc
Confidence 3445556666554 4455 889999999999999999999999874 465443 3334555444
No 242
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=47.85 E-value=22 Score=27.93 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+...| .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 54 ~q~~vL~~l~~~~-~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r~ 100 (161)
T 3e6m_A 54 PKLRLLSSLSAYG-ELTVGQLATLGVMEQSTTSRTVDQLVDE--GLAARS 100 (161)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 3557888888876 7999999999999999999999999886 566654
No 243
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=47.78 E-value=18 Score=22.70 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=27.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHH
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
+.++....|++.++ .| .|+.+||...|++.....+-|.
T Consensus 6 ~~~~~~~~i~~l~~-~g--~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 6 INKHEQEQISRLLE-KG--HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHHHHHHHHH-TT--CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH-cC--CCHHHHHHHHCCCHHHHHHHHH
Confidence 44444556666654 33 8999999999999988866543
No 244
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=47.78 E-value=8.9 Score=31.89 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.0
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~ 112 (303)
...|++|++|. .+.|| .+|+.|||.++|++..
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~ 81 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGTG 81 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChH
Confidence 34566666654 55687 7999999999999853
No 245
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=47.60 E-value=23 Score=26.98 Aligned_cols=47 Identities=6% Similarity=0.100 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+.+. +.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r~ 84 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRK--ELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHC--CCeecc
Confidence 445688888877 56999999999999999999999999886 666644
No 246
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=47.34 E-value=9.9 Score=30.22 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.||. +|+.|||..+|++.-.
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gt 46 (194)
T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGA 46 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 346667665 4667975 9999999999998754
No 247
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=47.21 E-value=11 Score=30.35 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.5
Q ss_pred chhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~e 113 (303)
...|++|++|. .+.||. +|+.|||..+|++.-.
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGA 47 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 34567776664 567875 9999999999998754
No 248
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=47.16 E-value=13 Score=29.54 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.2
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 94 ~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
-|-++ +..++|.+-|+|.+.+++||..|.++ |-++.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~e--Glv~~ 70 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELERQ--EVIIT 70 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE
Confidence 46677 78899999999999999999999886 44543
No 249
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=46.94 E-value=9.5 Score=30.32 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=23.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~ 112 (303)
..|++|++| +.+.|| .+|+.|||.++|++..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~ 47 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTRG 47 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHH
Confidence 345666555 467787 6999999999999853
No 250
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=46.58 E-value=7.9 Score=32.24 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=24.4
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++|. .+.|+. +|+.|||.++|++...
T Consensus 25 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 61 (211)
T 3fiw_A 25 MNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPS 61 (211)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred cCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 3456666554 556987 9999999999998754
No 251
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=46.48 E-value=8.3 Score=31.50 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=23.4
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl 111 (303)
...|++|++|. .+.|| .+|+.|||.++|++.
T Consensus 34 ~~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 69 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPL 69 (237)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCCh
Confidence 34567776664 57797 799999999999763
No 252
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=46.29 E-value=4.9 Score=32.74 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
..+.+|++. -+.|.++|..++|.+.|+|...++++|..|.++.
T Consensus 13 ~l~~~Il~~-l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~G 55 (163)
T 2gqq_A 13 RIDRNILNE-LQKDGRISNVELSKRVGLSPTPCLERVRRLERQG 55 (163)
T ss_dssp SHHHHHHHH-HHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHT
T ss_pred HHHHHHHHH-HHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456788884 4557789999999999999999999999998774
No 253
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=46.27 E-value=5.3 Score=31.07 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.0
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tl 44 (186)
T 2jj7_A 7 QTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMA 44 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhh
Confidence 445566554 5667876 99999999999998754
No 254
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=46.15 E-value=24 Score=27.38 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 50 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--glv~r~ 96 (162)
T 2fa5_A 50 PEWRVITILALYP-GSSASEVSDRTAMDKVAVSRAVARLLER--GFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHST-TCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeee
Confidence 3456888888754 6999999999999999999999999988 666654
No 255
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=46.10 E-value=36 Score=30.62 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCchhhHHHHHHHH-hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeecccc
Q 022049 79 LPADVRNRAMDAVD-ACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGD 136 (303)
Q Consensus 79 l~~~~~~~im~Ave-~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~---~G~LeVsesGd 136 (303)
+++..-+++++|+- -.|.-+|+.++|...|++.+++++.|..|.+++ +--+++-+.|+
T Consensus 11 ~~~~~l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~ 72 (219)
T 2z99_A 11 LDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSE 72 (219)
T ss_dssp CCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 44444456666653 357779999999999999999999999999988 44577766444
No 256
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=45.99 E-value=10 Score=30.65 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
+.|++|++| +.+.||. +|+.|||.++|++....
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tl 59 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTL 59 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 346666655 5678985 89999999999998654
No 257
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=45.84 E-value=54 Score=32.18 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee------ccccEEEEcChhhHH
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS------DEGDVLYVFPNNYRA 147 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs------esGdIlYvFP~~fRs 147 (303)
||+..+.+.|+ +|--++|..++++.+++++.|-.|..+.--++|=- +.+--.|.|=-|...
T Consensus 364 RI~r~L~~~~~-l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~ 430 (534)
T 2xub_A 364 RIFRLVLQKKH-IEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILS 430 (534)
T ss_dssp HHHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHH
Confidence 45555656665 99999999999999999999999999987777643 235577777555444
No 258
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=45.21 E-value=36 Score=29.03 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=36.1
Q ss_pred cCCceeehhhhhhcC--CCHHHHHHHHHHHHhhc---CCceEeecccc
Q 022049 94 CNRRVTIGDVAGKAG--LKLNEAQKALQALAADT---DGFLEVSDEGD 136 (303)
Q Consensus 94 ~g~rvTvgDVAa~aG--Lsl~eAe~aL~aLAad~---~G~LeVsesGd 136 (303)
.+..+|+.++|...| ++.+++++.|..|.+++ +--+++-+.|+
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~ 66 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAG 66 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECC
Confidence 466799999999999 99999999999999988 44577766554
No 259
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=45.16 E-value=11 Score=30.29 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.6
Q ss_pred hhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (219)
T 2w53_A 11 ATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGA 47 (219)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 3466776654 56787 59999999999998754
No 260
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=45.14 E-value=9.3 Score=31.76 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=24.4
Q ss_pred hhHHHHHHH----Hhc-CC-ceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDAV----DAC-NR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~Av----e~~-g~-rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++|. .+. |+ .+|+.|||.++|++....
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tl 43 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAI 43 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHH
Confidence 456666554 556 88 699999999999997654
No 261
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=44.97 E-value=10 Score=30.25 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.7
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~ 52 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESL 52 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHH
Confidence 3456667665 4667874 99999999999997653
No 262
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=44.86 E-value=65 Score=24.93 Aligned_cols=43 Identities=12% Similarity=-0.032 Sum_probs=28.4
Q ss_pred CCCCchhhHHHHH-HHHhcCCceeehhhhhhcCCCHHHHHHHHH
Q 022049 77 DKLPADVRNRAMD-AVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 77 ~~l~~~~~~~im~-Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
+.||..-|.-+.- .....+...|..+||...|+|.+.+++-+.
T Consensus 18 ~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 18 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3566655443321 111123678999999999999999977653
No 263
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=44.84 E-value=13 Score=28.88 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+...+..+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~--Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD--GMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEee
Confidence 345688899555667999999999999999999999999887 566554
No 264
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=44.53 E-value=14 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g-~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+-.++..+.+.+ ..+|+.|+|...|++...+-+.|..|..+.
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G 85 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKG 85 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 3457888888874 789999999999999999999999998874
No 265
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=44.39 E-value=19 Score=29.41 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=44.9
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEE
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYv 140 (303)
+.+.-+++++-|-+. .-+|+.-|+.+-.+....|+++|+.|.+..-=.+=+-...-.||.
T Consensus 43 Dk~t~dkl~KEVpk~-KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 43 DQEKYDRILKEVPTY-RYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp TTHHHHHHHHHCSSC-SSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred CHHHHHHHHHHccCC-eEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 456667777777665 349999999999999999999999998875444333334456775
No 266
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.25 E-value=10 Score=30.34 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.1
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
..|++|++|. .+.||. +|+.|||..+|++....
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 49 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGV 49 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHH
Confidence 4567776654 567875 89999999999987543
No 267
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=44.22 E-value=11 Score=31.07 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.3
Q ss_pred hhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHH
Q 022049 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~ 112 (303)
+.|++|++|. .++|| .+|+.|||.++|++..
T Consensus 7 ~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~ 42 (235)
T 2fbq_A 7 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLA 42 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHH
Confidence 4566776664 56797 6999999999999864
No 268
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=44.19 E-value=34 Score=32.29 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=45.5
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccc-cEEEEcChhhH
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNYR 146 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesG-dIlYvFP~~fR 146 (303)
..++++.+.+.+ .+|+.+++...|+|-..|++.|..|... |-|+-...| .-+|++|+-++
T Consensus 299 ~~~ll~~l~~~p-~~t~~~~~~~~~~S~~TA~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~l~ 359 (373)
T 3eqx_A 299 SHELVQVIFEQP-YCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVT 359 (373)
T ss_dssp CHHHHHHHHHCS-EEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHH
T ss_pred HHHHHHHHHHCC-CccHHHHHHHhCcCHHHHHHHHHHHHHC--CcEEEeCCCCceEeehHHHHH
Confidence 356777776655 5999999999999999999999999974 556544444 47899987553
No 269
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.18 E-value=29 Score=27.54 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=36.6
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec--ccc--EEEEcChhhHH
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGD--VLYVFPNNYRA 147 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse--sGd--IlYvFP~~fRs 147 (303)
.-.|+.++|...|++..++.+.|..|..+.-=..+... +|. -.|.|-.-|..
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~k 105 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEK 105 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHH
Confidence 34899999999999999999999999998644444332 343 36777555544
No 270
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=43.87 E-value=19 Score=31.95 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCcccccCCCCchhhHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 70 PGRIVESDKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 70 ~~~~~~~~~l~~~~~~~im~Ave~~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
||=.+.-+.-......++.+.+++.|+.. ++.|++...|++-.++++.|..|+ +.|--++|.+
T Consensus 129 ~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~-~~g~lv~l~~ 192 (258)
T 1lva_A 129 AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLV-REGVLVKIND 192 (258)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHH-HTTSEEESSS
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHH-HCCCEEEecC
Confidence 33334434444556777888888899887 899999999999999966655554 4555566654
No 271
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=43.86 E-value=6.3 Score=30.73 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t 47 (204)
T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGS 47 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHH
Confidence 456666665 456787 58999999999998754
No 272
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=43.77 E-value=12 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.8
Q ss_pred eeehhhhhhcCCCHHHHHHHHH
Q 022049 98 VTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 98 vTvgDVAa~aGLsl~eAe~aL~ 119 (303)
+|+.|||..+|+|...+-+.|.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 5889999999999999877663
No 273
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.71 E-value=5.6 Score=31.83 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=4.3
Q ss_pred hhHHHHHHHHhcCCc-eeehhhhhhcCCCHHH
Q 022049 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 83 ~~~~im~Ave~~g~r-vTvgDVAa~aGLsl~e 113 (303)
+-+.+++.+.+.||. +|+.|||.++|++...
T Consensus 35 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 66 (212)
T 2np3_A 35 ILTAARVCFAERGFDATSLRRIAETAGVDQSL 66 (212)
T ss_dssp CHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHcCCCHHH
Confidence 334445555678886 9999999999988643
No 274
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.45 E-value=12 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 86 RAMDAVDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 86 ~im~Ave~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
.+++.+.+.||. +|+.|||..+|++....
T Consensus 19 aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tl 48 (202)
T 2i10_A 19 TAMELFWRQGYEGTSITDLTKALGINPPSL 48 (202)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHHhCCChHHH
Confidence 334445678986 88999999999997654
No 275
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=43.39 E-value=11 Score=35.32 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHH
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLA 122 (303)
+..|++.+.+....+|+.|++..||+..+++-.+|+.|-
T Consensus 195 ~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 195 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 356777777777799999999999999999999998873
No 276
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=43.23 E-value=12 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=25.9
Q ss_pred CchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 80 ~~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
+...|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t 50 (199)
T 3crj_A 12 FSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAA 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHH
T ss_pred chhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhH
Confidence 445677777665 55686 69999999999998754
No 277
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=43.14 E-value=32 Score=26.62 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+-.++..+.+. ..+|+.|+|...|++...+-+.|..|..+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~G 83 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQSG 83 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 445788888776 569999999999999999999999998863
No 278
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=43.02 E-value=12 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...+++|++| +.+.|| .+|+.|||.++|++...
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 59 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKSA 59 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHH
Confidence 3456677665 456787 69999999999998753
No 279
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=42.95 E-value=39 Score=28.09 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=28.9
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.++|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~--GlI~~ 225 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREK--KMISI 225 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHC--CCEEE
Confidence 46788999999999999999999999876 44544
No 280
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=42.94 E-value=6.5 Score=30.86 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.6
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
+.|++|++|. .+.||. +|+.|||.++|++....
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tl 55 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNL 55 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHH
Confidence 4567777765 567875 99999999999997654
No 281
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=42.74 E-value=17 Score=32.15 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=42.3
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccc
Q 022049 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (303)
Q Consensus 76 ~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesG 135 (303)
+--|....+-.|.+++.+ +..|+.|+|.++|++....++=|+.|++ -|-++-.++|
T Consensus 19 ~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~~~~ 74 (332)
T 3i53_A 19 PMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRDGQG 74 (332)
T ss_dssp HHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECTTS
T ss_pred HHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEecCCC
Confidence 333444556667788864 4799999999999999999999999998 5666655444
No 282
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=42.69 E-value=17 Score=28.60 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.|+..+...| .+|++|+|...|++...+-+.|..|..+ |-++-.
T Consensus 47 ~q~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 93 (162)
T 3k0l_A 47 PQFTALSVLAAKP-NLSNAKLAERSFIKPQSANKILQDLLAN--GWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHTSCGGGHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--cCeEec
Confidence 4567899998876 6999999999999999999999999876 555544
No 283
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=42.44 E-value=11 Score=32.99 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeehhhhhhcCCCHHHHHHHHH
Q 022049 98 VTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 98 vTvgDVAa~aGLsl~eAe~aL~ 119 (303)
+|+.|||..+|+|...+-++|.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5899999999999999988887
No 284
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=42.44 E-value=5.2 Score=36.04 Aligned_cols=46 Identities=15% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcC--Cceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCce
Q 022049 82 DVRNRAMDAVDACN--RRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFL 129 (303)
Q Consensus 82 ~~~~~im~Ave~~g--~rvTvgDVAa~a-GLsl~eAe~aL~aLAad~~G~L 129 (303)
..+.+|++.++.+. ..+.+-||+++. |++.++++++|..|.++ ||+
T Consensus 207 ~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e--G~I 255 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE--GHI 255 (270)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC--CEE
Confidence 46788999998875 788999999988 79999999999999887 554
No 285
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=42.33 E-value=38 Score=26.56 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeecccc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGD 136 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aG----Lsl~eAe~aL~aLAad~~G~LeVsesGd 136 (303)
..+-.||+.+-+.+..+|+.||+...+ ++...+..-|..|..+ |.++-..+|.
T Consensus 9 ~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k--Glv~r~~~~r 65 (138)
T 2g9w_A 9 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK--NLVLQIRDDR 65 (138)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT--TSEEEEC---
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC--CCEEEEecCC
Confidence 356789999988656799999999987 8999999999999875 6777666666
No 286
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=42.32 E-value=8.3 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=23.8
Q ss_pred hhhHHHHHHH----H-hcCC-ceeehhhhhhcCCCHH
Q 022049 82 DVRNRAMDAV----D-ACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 82 ~~~~~im~Av----e-~~g~-rvTvgDVAa~aGLsl~ 112 (303)
..|++|++|. . +.|| .+|+.|||.++|++..
T Consensus 11 ~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~ 47 (220)
T 3lsj_A 11 QTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPA 47 (220)
T ss_dssp HHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChh
Confidence 4566776665 4 6675 7999999999999853
No 287
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=42.23 E-value=28 Score=30.96 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-+|+.++.+.+ +.|+.|+|...|++...+.+.|..|... |-++-.
T Consensus 153 ~~~~IL~~L~~~~-~~s~~eLA~~lglsksTv~r~L~~Le~~--GlV~r~ 199 (244)
T 2wte_A 153 EEMKLLNVLYETK-GTGITELAKMLDKSEKTLINKIAELKKF--GILTQK 199 (244)
T ss_dssp HHHHHHHHHHHHT-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe
Confidence 4557888887665 6999999999999999999999999876 666654
No 288
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=42.05 E-value=14 Score=31.12 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...+++|++| +.+.||. +|+.|||.++|++....
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~ 85 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTV 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHH
Confidence 3456667665 4567885 99999999999997653
No 289
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=42.03 E-value=5.4 Score=40.01 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesG 135 (303)
..++.||+.+++.|. +|-+||+..+|++..+|++.|..|..+ |.|+-.-.|
T Consensus 516 ~~~~~I~~~l~~~g~-it~~di~~l~~ls~~qa~~~L~~Lv~~--G~l~~~G~g 566 (583)
T 3lmm_A 516 ELTNAAMLWLSEVGD-LATSDLMAMCGVSRGTAKACVDGLVDE--ERVVAVGGG 566 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCC-cCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEeCCC
Confidence 345678999998765 999999999999999999999999877 556544333
No 290
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=41.86 E-value=16 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=25.0
Q ss_pred hhhHHHH----HHHHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im----~Ave~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|+ +.+.+.|+ .+|+.|||.++|++....
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 44 (213)
T 3ni7_A 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEI 44 (213)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHH
Confidence 3455554 45678896 699999999999997653
No 291
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=41.16 E-value=14 Score=30.30 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 14 ~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~t 50 (208)
T 3v6g_A 14 GRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGS 50 (208)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchh
Confidence 456777665 566788 58999999999998653
No 292
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=40.45 E-value=28 Score=31.22 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=47.9
Q ss_pred cccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCC---CHHHHHHHHHHHHhhcCCceEee-----c-cc--cEEEEcC
Q 022049 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNEAQKALQALAADTDGFLEVS-----D-EG--DVLYVFP 142 (303)
Q Consensus 74 ~~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGL---sl~eAe~aL~aLAad~~G~LeVs-----e-sG--dIlYvFP 142 (303)
+.+--|-...+-.|.+++.+.|+..|+.|+|+++|+ +..-.++=|+.|++ -|-|+-. + +| +-.|.-.
T Consensus 22 ~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~~~g~~~~~y~~t 99 (358)
T 1zg3_A 22 VSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH--NGFFAKTIVKGKEGDEEEEIAYSLT 99 (358)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHH--TTSEEEEEECCSSSSCCCEEEEEEC
T ss_pred HHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhh--CCcEEEecccccccCCCCCCEEeCC
Confidence 333444455666778888887778999999999999 47777788888876 4566654 2 23 4567765
Q ss_pred hh
Q 022049 143 NN 144 (303)
Q Consensus 143 ~~ 144 (303)
..
T Consensus 100 ~~ 101 (358)
T 1zg3_A 100 PP 101 (358)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 293
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.42 E-value=5.9 Score=34.68 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=0.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHH
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
.++|+.|||..+|+|...+-++|+
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Confidence 479999999999999999988886
No 294
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=40.36 E-value=19 Score=28.51 Aligned_cols=48 Identities=6% Similarity=0.126 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.||..+... +..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 95 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR--GLVLRT 95 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEeec
Confidence 456789999888 488999999999999999999999999886 566544
No 295
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=40.35 E-value=23 Score=26.09 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=33.6
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEE
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIl 138 (303)
|+.+|+.|+|...|++...+-+.|..|..+ |.++..+++...
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~~~~d~R~~ 69 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEEA--KMVECELEGRTK 69 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHHT--TSEEEEEETTEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--cCccCCCCCCeE
Confidence 345999999999999999999999999765 566555566533
No 296
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=39.91 E-value=62 Score=28.85 Aligned_cols=68 Identities=13% Similarity=0.310 Sum_probs=46.6
Q ss_pred cccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCC---HHHHHHHHHHHHhhcCCceEeeccccEEEEcCh
Q 022049 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLK---LNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (303)
Q Consensus 74 ~~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLs---l~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~ 143 (303)
+.+--|....+-.|.+++.+.|+..|+.|+|.++|++ ..-.++=|+.|++ -|-|+..++|+=.|.-..
T Consensus 28 ~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~y~~t~ 98 (352)
T 1fp2_A 28 IDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAH--NGFFEIITKEEESYALTV 98 (352)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHH--TTSEEEEESSSEEEEECH
T ss_pred HHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHh--CCeEEEecCCCCeEeCCH
Confidence 3334444555666788888776689999999999995 6667777888876 566765532334566543
No 297
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=39.80 E-value=39 Score=26.32 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+.+. ..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 51 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 97 (159)
T 3s2w_A 51 GQFPFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDE--GYVFRQ 97 (159)
T ss_dssp TTHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEe
Confidence 345788888776 45999999999999999999999999876 555544
No 298
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.72 E-value=15 Score=29.42 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=25.2
Q ss_pred chhhHHHHHHH----HhcCCceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~rvTvgDVAa~aGLsl~eA 114 (303)
...|++|++|. .+.|..+|+.|||.++|++....
T Consensus 19 ~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tl 56 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQV 56 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHH
Confidence 34667776654 34458999999999999997654
No 299
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.59 E-value=6.2 Score=34.44 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHH
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
.++|+.|||..+|+|...+-++|..
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 4799999999999999999999886
No 300
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=39.43 E-value=37 Score=24.99 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHH
Q 022049 83 VRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQAL 121 (303)
Q Consensus 83 ~~~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~aL 121 (303)
.-++|++.++++= ...|+.|+|...|+|....++.+...
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467888887763 37999999999999998887766654
No 301
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.20 E-value=16 Score=30.01 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=27.0
Q ss_pred CCchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 79 LPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 79 l~~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
-....|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 13 ~~~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~ 53 (216)
T 2oi8_A 13 YRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPAL 53 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHH
Confidence 345667777665 4566875 99999999999987654
No 302
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=38.88 E-value=6.4 Score=34.85 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHH
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
..++|+.|||..+|+|...+-++|..
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34689999999999999999999886
No 303
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=38.68 E-value=32 Score=30.43 Aligned_cols=53 Identities=8% Similarity=0.020 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc-----CCceEeecccc
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT-----DGFLEVSDEGD 136 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~-----~G~LeVsesGd 136 (303)
.+.-++++-.++..|+..|+|...|++...+..+|..|.... .+.++.|++|.
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~ 74 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRGHFLTLKGK 74 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CEEECHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCeEECHHHH
Confidence 467788888888889999999999999999999999998753 24444555543
No 304
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.42 E-value=8.3 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 3 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgt 39 (208)
T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGL 39 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 345666554 567787 59999999999998654
No 305
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=38.31 E-value=6.2 Score=29.78 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhc-----CCeEeeecccCccCC
Q 022049 271 KRWKLIGEYIASN-----GGVVTAEELAPYLDI 298 (303)
Q Consensus 271 rRwq~Ig~~Ir~N-----~GvV~AEQlAPyLD~ 298 (303)
.|.+.|.++|+++ ||.++.+|||--++.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv 36 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGL 36 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC
Confidence 4778899999998 999999999988886
No 306
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=38.18 E-value=8.9 Score=31.27 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
..+++|++| +.+.|| .+|+.|||.++|++...
T Consensus 30 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 66 (226)
T 2pz9_A 30 STRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKER 66 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHH
Confidence 445666655 456687 49999999999998754
No 307
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=38.13 E-value=32 Score=25.91 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=28.5
Q ss_pred hHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHH
Q 022049 84 RNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 84 ~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
=.++++.++++ ....|+.|+|...|+|...-++.+..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35677788776 66799999999999998877655543
No 308
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=37.64 E-value=30 Score=28.42 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.+|..+... ++.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r~ 90 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN--GYVDVI 90 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEec
Confidence 445678888875 578999999999999999999999999876 555543
No 309
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=37.63 E-value=6.9 Score=39.18 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.++..+|++++++.+..++..++|...|++.+.+-.++..|.+..
T Consensus 4 ~~~~~~iL~~l~~~~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~~ 48 (508)
T 3l4g_A 4 GQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALG 48 (508)
T ss_dssp ---------------------------------------------
T ss_pred hHHHHHHHHHHHhcCCCcCHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 457789999999887557889999999999999999999998863
No 310
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=37.58 E-value=1.1e+02 Score=22.01 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=37.8
Q ss_pred hHHHHHHHHhcCCceeehhh----hhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACNRRVTIGDV----AGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDV----Aa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+-.++.++.+. ...|+.|+ |...|++...+.+.|..|..+ |-++-.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~--gli~r~ 59 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE--GFVKER 59 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCEEEE
Confidence 45788888775 45999999 899999999999999999987 555543
No 311
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=37.40 E-value=39 Score=26.90 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.9
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~Le 130 (303)
+=.++..+.+.+...|+.|+|...|++...+-+.+..|..+ |-++
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~--GlV~ 77 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK--GLIT 77 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC--CCeE
Confidence 34688899888888999999999999999999999999885 4444
No 312
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=37.28 E-value=11 Score=30.93 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 85 ~~im~Ave~~g~-rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
..++++++..|| +.++.|+|...|++.+++++.|..+.+-
T Consensus 26 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ~~ 66 (130)
T 2k9m_A 26 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLRL 66 (130)
T ss_dssp HHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 446777788898 6888999999999999999999888753
No 313
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=37.23 E-value=26 Score=26.89 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+-.++..+.+. ..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 37 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r~ 83 (140)
T 3hsr_A 37 TGYIVLMAIEND-EKLNIKKLGERVFLDSGTLTPLLKKLEKK--DYVVRT 83 (140)
T ss_dssp HHHHHHHHSCTT-CEEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCeEec
Confidence 345678888764 47999999999999999999999999876 555544
No 314
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.21 E-value=17 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.9
Q ss_pred hhhHHHHHH----HHhcCCceeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~rvTvgDVAa~aGLsl~e 113 (303)
..|++|++| +.+.| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~t 45 (213)
T 2g7g_A 11 LDRERIAEAALELVDRDG-DFRMPDLARHLNVQVSS 45 (213)
T ss_dssp CCHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhH
Confidence 345666555 55669 99999999999999764
No 315
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=37.18 E-value=95 Score=26.63 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=40.7
Q ss_pred hhHHHHHHHHh----cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-cccEEEEc
Q 022049 83 VRNRAMDAVDA----CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVLYVF 141 (303)
Q Consensus 83 ~~~~im~Ave~----~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse-sGdIlYvF 141 (303)
+-..+.+.+.. -|.+++..++|.+-|+|..-++++|..|.++ |-+++.. .|-.|-.+
T Consensus 33 v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~e--Glv~~~~~~G~~V~~~ 94 (239)
T 2hs5_A 33 VAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIED--RLVAHELNRGVFVRVP 94 (239)
T ss_dssp HHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETTTEEEECCC
T ss_pred HHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCeeEEeCC
Confidence 33444444433 4778999999999999999999999999976 5566554 45444333
No 316
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.93 E-value=52 Score=25.87 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 82 ~~~~~im~Ave~~g~-rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+....|++.++..|. +++..|+..+++|+-.++.+.|..|-+.
T Consensus 37 ~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k 80 (95)
T 2yu3_A 37 NQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK 80 (95)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 355678999977654 6999999999999999999999999653
No 317
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=36.90 E-value=69 Score=27.80 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=36.1
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhhhc-----------CCC---HHHHHHHHHHHHhhcCCceEee
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKA-----------GLK---LNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa~a-----------GLs---l~eAe~aL~aLAad~~G~LeVs 132 (303)
.++..+.|++|+++++++||+....--+.++ .++ ..+.-+++..-|.+.|-++.+.
T Consensus 25 ~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 94 (340)
T 1qpz_A 25 RFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG 94 (340)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4678999999999999999975432111111 111 2345567777777777776553
No 318
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=36.72 E-value=2.9 Score=31.62 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=30.3
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 94 ~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.|.++ |+.|+|..-|+|...++++|..|.++ |-++..
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~--Gli~~~ 68 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSE--GLVSSR 68 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTS--SCCEEE
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe
Confidence 46666 99999999999999999999999755 445543
No 319
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=36.60 E-value=33 Score=25.34 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=27.1
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHHHhhcC
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~aLAad~~ 126 (303)
..|+.++|..-|+++++.-++|++.+.+..
T Consensus 40 ~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~~ 69 (73)
T 2k5e_A 40 NESLEQGANAHGLNVEDILRDLNALALEHH 69 (73)
T ss_dssp GSBHHHHHHHTTCCHHHHHHHHHHHHHCCC
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999887754
No 320
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=36.32 E-value=17 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=24.0
Q ss_pred hhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.||. +|+.|||.++|++....
T Consensus 9 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tl 45 (199)
T 2o7t_A 9 RREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATL 45 (199)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHH
Confidence 45555554 5668875 69999999999997654
No 321
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=36.31 E-value=1e+02 Score=30.22 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEc
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvF 141 (303)
+|.+.+-.+ ++.|+.+++..++|+..+++.+|..|.+-.=-.-...++|...|.+
T Consensus 23 ~V~~~Ll~~-G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~ 77 (534)
T 2xub_A 23 KIGVHLIRT-GSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEA 77 (534)
T ss_dssp HHHHHHHHH-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred HHHHHHHhc-CCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEE
Confidence 555666554 6799999999999999999999999998664444445677777776
No 322
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=36.24 E-value=38 Score=26.02 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+-.++..+.+. +..+|+.|+|...|++...+-+.|..|..+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 81 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQED 81 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345678888775 3679999999999999999999999998875
No 323
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=36.20 E-value=12 Score=27.17 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=18.9
Q ss_pred CceeehhhhhhcCCCHHHHHHHH
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKAL 118 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL 118 (303)
..+|+.|||..+|+|...+-+.|
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Confidence 35899999999999998886554
No 324
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=36.18 E-value=36 Score=31.26 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+.+|++.+.++| .+|-.|+|..+|||...+.+-+..|.++
T Consensus 18 ~~~il~~l~~~~-~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 18 AGAVYRLIDQLG-PVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHHSSC-SCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356899998765 6999999999999999999999998764
No 325
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=36.08 E-value=41 Score=30.87 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=40.5
Q ss_pred cccccCCCCchhhHHHHHHHHhcCCceeehhhh--------hhcCCCHHHHHHHHHHHHhhc
Q 022049 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVA--------GKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 72 ~~~~~~~l~~~~~~~im~Ave~~g~rvTvgDVA--------a~aGLsl~eAe~aL~aLAad~ 125 (303)
+..+-++|| .+.+...+.+++.|+ .|+.||+ ..+|++.++|++.|.+.....
T Consensus 33 ~~~~l~~l~-Gi~~~~~~kL~~ag~-~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 33 IIRSIEDLP-GVGPATAEKLREAGY-DTLEAIAVASPIELKEVAGISEGTALKIIQAARKAA 92 (349)
T ss_dssp --CCSSCCT-TCCHHHHHHHHTTTC-CSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred ccccHHHcC-CCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhc
Confidence 344567786 788999999999998 5777776 368999999999988876654
No 326
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=36.03 E-value=89 Score=26.10 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=42.9
Q ss_pred CCCCchhhHHHHHHHH----hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChh
Q 022049 77 DKLPADVRNRAMDAVD----ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave----~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~ 144 (303)
.++...+-..+.+.+. +-|.+++..++|.+-|+|..-++++|..|.++ |-+++.. |.=.||-+.+
T Consensus 11 ~~l~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~e--Glv~~~~-~~G~~V~~~~ 79 (218)
T 3sxy_A 11 DLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATE--GLVKVVP-RVGFFVTDVD 79 (218)
T ss_dssp ---CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEET-TTEEEECCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeC-CCceEEcCCC
Confidence 3444444444444443 45788999999999999999999999999987 5555543 2234444433
No 327
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=35.81 E-value=36 Score=25.53 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeec-cccEEEEc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSD-EGDVLYVF 141 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aG----Lsl~eAe~aL~aLAad~~G~LeVse-sGdIlYvF 141 (303)
.+-.||..+.+. +.+|+.|+|...| ++...+.+.|..|..+ |-++... +...+|+.
T Consensus 11 ~~~~vL~~l~~~-~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~--Glv~r~~~~rr~~~~~ 71 (123)
T 1okr_A 11 AEWEVMNIIWMK-KYASANNIIEEIQMQKDWSPKTIRTLITRLYKK--GFIDRKKDNKIFQYYS 71 (123)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--TSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC--CCeEEEecCCeEEEEE
Confidence 456789999875 4699999999988 8899999999999887 4454443 33455544
No 328
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.46 E-value=17 Score=29.42 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.2
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 022049 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~e 113 (303)
...|++|++|. .+.|| .+|+.|||.++|+|.-.
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gt 45 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTTRAVAEESGWSTGV 45 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcch
Confidence 35567776654 66887 58999999999998754
No 329
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.37 E-value=1.3e+02 Score=25.63 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.8
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecc
Q 022049 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (303)
Q Consensus 93 ~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVses 134 (303)
+.+..+|+.|+|...|++...+.+.|..|..+ |-++...+
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~--GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAE--ELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEEecC
Confidence 34678999999999999999999999999987 55655554
No 330
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.32 E-value=44 Score=28.16 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+-.||..+...+ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 49 ~q~~iL~~L~~~~-~~t~~eLa~~l~i~~stvs~~l~~Le~~G 90 (207)
T 2fxa_A 49 NEHHILWIAYQLN-GASISEIAKFGVMHVSTAFNFSKKLEERG 90 (207)
T ss_dssp HHHHHHHHHHHHT-SEEHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4457888888776 69999999999999999999999998874
No 331
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=35.14 E-value=18 Score=33.95 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCC------ceeehhhhhhcCCCHHHHHHHHHHHH
Q 022049 85 NRAMDAVDACNR------RVTIGDVAGKAGLKLNEAQKALQALA 122 (303)
Q Consensus 85 ~~im~Ave~~g~------rvTvgDVAa~aGLsl~eAe~aL~aLA 122 (303)
..|++.+.+... .+|+.|++..||+..+++-.+|+.|-
T Consensus 194 ~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 194 QTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp HHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 556666655554 79999999999999999999998863
No 332
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=35.12 E-value=47 Score=28.75 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=43.8
Q ss_pred chhhHHHHHHHH-hc--CCceeehhhhhhcCCCHHHHHHHHHHHHh-----hcCCceEeeccccEEEEcC
Q 022049 81 ADVRNRAMDAVD-AC--NRRVTIGDVAGKAGLKLNEAQKALQALAA-----DTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 81 ~~~~~~im~Ave-~~--g~rvTvgDVAa~aGLsl~eAe~aL~aLAa-----d~~G~LeVsesGdIlYvFP 142 (303)
.+.+.++.+++. +. |.-+|-||||...|.+ ++.-=.++++ ...||==|..+| + =-|.
T Consensus 90 t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~G~p---~RaVG~A~~~Np~~~~iPcHRVv~~~G-l-~gy~ 154 (174)
T 1mgt_A 90 TPFEKKVYEWLTKNVKRGSVITYGDLAKALNTS---PRAVGGAMKRNPYPIVVPCHRVVAHDG-I-GYYS 154 (174)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSC---HHHHHHHHHTCSCTTTSCGGGEEBTTB-C-CCCT
T ss_pred ChHHHHHHHHHHccCCCCceEeHHHHHHHhCCC---HHHHHHHHHhCCCCCcCCcCeEECCCC-C-CCCC
Confidence 578899999999 66 6678899999999999 5444445443 469999999999 4 3444
No 333
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=35.12 E-value=8 Score=34.01 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHH
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
..++|+.|||..+|+|...+-++|+
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3579999999999999999988886
No 334
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.99 E-value=39 Score=25.09 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=27.3
Q ss_pred HHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHH
Q 022049 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 85 ~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
.++++.++++ ....|+.|+|...|+|...-++.+..
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4667777654 56799999999999998777665543
No 335
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.99 E-value=23 Score=27.76 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVses 134 (303)
+.+++|++++++ ...++.|+|...|++.+++++.|. .+.+.|--.++.++
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~-~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLR-QAAQQGIITAIVKD 56 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHH-HHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHH-HHHHCCCEEEecCC
Confidence 456677777755 335888999999999999965554 45555666666654
No 336
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=34.58 E-value=53 Score=26.52 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 87 AMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 87 im~Ave~~--g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+|-.+..+ +..+|+.++|...|+|..-.++-|..|... |-++..
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a--Glv~s~ 61 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA--GLIRSV 61 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CEEEec
Confidence 34444433 346999999999999999999999999765 345543
No 337
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=34.54 E-value=49 Score=25.59 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHH
Q 022049 81 ADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQ 119 (303)
Q Consensus 81 ~~~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~ 119 (303)
...-.++++.++++ ....|+.|+|...|+|...-++.+.
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34446778888776 6679999999999999887755444
No 338
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=34.35 E-value=39 Score=31.48 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
-+.+|++.+.+.+ .+|..|+|..+|||...+.+-+..|.++
T Consensus 40 n~~~il~~l~~~~-~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 40 NAGRVYKLIDQKG-PISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3456899998875 6999999999999999999999998875
No 339
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=34.27 E-value=8.4 Score=34.01 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHH
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~aL 121 (303)
++|+.|||..+|+|...+-++|+..
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 5899999999999999999998864
No 340
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=34.11 E-value=27 Score=30.25 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=39.4
Q ss_pred hhHHHHHHHHh----cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 83 VRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 83 ~~~~im~Ave~----~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
+.+.+.+.+.. -|.++ |..++|.+-|+|...+++||..|.++ |-|+. ..|-=.|+=+
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--g~i~~-~~g~G~~V~~ 71 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQK--GAIFQ-VRGSGIFVRK 71 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE-ETTTEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE-eCCceEEEec
Confidence 44455555554 35566 88999999999999999999999987 44543 3333344433
No 341
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=34.01 E-value=49 Score=28.03 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=53.3
Q ss_pred CchhhHHHHHHHHhcCCc-eeehhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeec-------ccc--EEEEcChhhHHH
Q 022049 80 PADVRNRAMDAVDACNRR-VTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSD-------EGD--VLYVFPNNYRAK 148 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~r-vTvgDVAa~aG-Lsl~eAe~aL~aLAad~~G~LeVse-------sGd--IlYvFP~~fRs~ 148 (303)
....|.+|++.+..+..+ +|+.|++..-+ |+...+.+-|..|.... -++..+ .|- -.|.-...=|..
T Consensus 27 ~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaG--LV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 27 LHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRG--IVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp CCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT--SEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred cchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCC--CeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 345788999999887654 89999999988 99999999999999864 444321 121 477777777887
Q ss_pred Hhh
Q 022049 149 LAA 151 (303)
Q Consensus 149 l~~ 151 (303)
|..
T Consensus 105 l~~ 107 (151)
T 3u1d_A 105 LRA 107 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
No 342
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=33.87 E-value=18 Score=27.07 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=22.9
Q ss_pred cchhhhhhhcccCCCCCCCchHHHHHHHHHHHHHhcCCeEeeeccc
Q 022049 248 MNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELA 293 (303)
Q Consensus 248 mnFlEsVFSFvFGDGDPN~dlEerRwq~Ig~~Ir~N~GvV~AEQlA 293 (303)
.-|.+++- .|+.|.|+ ||+.|++++ ++ +++|+.
T Consensus 17 k~fe~al~--~~p~~t~~------RW~~IA~~l--gR---t~~eV~ 49 (72)
T 2cqq_A 17 SQLTRSMV--KFPGGTPG------RWEKIAHEL--GR---SVTDVT 49 (72)
T ss_dssp HHHHHHHH--HSCTTCTT------HHHHHHHHH--TS---CHHHHH
T ss_pred HHHHHHHH--HCCCCCCc------HHHHHHHHh--CC---CHHHHH
Confidence 44556654 67877773 899999998 32 666654
No 343
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=33.82 E-value=39 Score=26.75 Aligned_cols=47 Identities=15% Similarity=0.374 Sum_probs=33.8
Q ss_pred hHHHHHHHHhcC----CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 84 RNRAMDAVDACN----RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 84 ~~~im~Ave~~g----~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+=.++..+...+ +.+|++|+|...|++...+-+.+..|..+ |-+++.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~--glVr~~ 85 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD--GLVRVM 85 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT--TSBC--
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEee
Confidence 446777776654 46999999999999999999999999776 556554
No 344
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=33.69 E-value=89 Score=26.81 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=43.2
Q ss_pred CCCchhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEE
Q 022049 78 KLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (303)
Q Consensus 78 ~l~~~~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIl 138 (303)
.|+...+..+..+++.. |..+++.++|...|++.....+-|..+.-+ .|-++.+..|.++
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~-~~li~~~~~g~~~ 304 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR-QGLLKRTPRGRVP 304 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH-TTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH-hcchhcCCcccee
Confidence 34444445555666665 456889999999999999999988885554 4677877777644
No 345
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=33.67 E-value=47 Score=30.59 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHh
Q 022049 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (303)
Q Consensus 83 ~~~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aLAa 123 (303)
.+.+|++.+++. |..+|..++|.+.|+|...+.+.+..|-+
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~ 45 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL 45 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 467899999764 66899999999999999999999999975
No 346
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=33.62 E-value=19 Score=27.85 Aligned_cols=45 Identities=11% Similarity=0.338 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
.+-.++..+ .+..+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 39 ~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r 83 (151)
T 3kp7_A 39 EQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNA--ELVKL 83 (151)
T ss_dssp HHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 345678888 4566999999999999999999999999887 66663
No 347
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=33.34 E-value=42 Score=24.99 Aligned_cols=37 Identities=3% Similarity=0.054 Sum_probs=28.4
Q ss_pred HHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHH
Q 022049 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (303)
Q Consensus 85 ~~im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aL 121 (303)
.++++.++++ ....|+.|+|...|+|...-++.+...
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5667777665 567999999999999988876665543
No 348
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=33.33 E-value=39 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=30.7
Q ss_pred HHHHHHh-cCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 87 AMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 87 im~Ave~-~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+|-.+.+ .+..+|+.|+|.+.|+|....++.|..|...
T Consensus 19 ~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 19 ILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444443 3567999999999999999999999999873
No 349
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=33.31 E-value=91 Score=24.99 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHh-----------cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 82 DVRNRAMDAVDA-----------CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 82 ~~~~~im~Ave~-----------~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
+..+|+...+.+ ...++|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~ 210 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE--GIIHL 210 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEe
Confidence 445677666533 2346788999999999999999999999887 44444
No 350
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.12 E-value=33 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=26.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+..|+.|+|..-|+++++.-++|+++.+.
T Consensus 37 ~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 37 MGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp CCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 67899999999999999999999988753
No 351
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=32.95 E-value=28 Score=32.77 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=28.9
Q ss_pred hHHHHHHHHh-cCCceeehhhhhhcCCCHHHHHHHHHHH
Q 022049 84 RNRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (303)
Q Consensus 84 ~~~im~Ave~-~g~rvTvgDVAa~aGLsl~eAe~aL~aL 121 (303)
+..|++.+.+ .+..+|+.|++..||+..++.-.+|+.|
T Consensus 200 ~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 200 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3567877765 5678999999999999999999999987
No 352
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=32.88 E-value=67 Score=27.96 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=39.5
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhhh--------------cCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGK--------------AGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa~--------------aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
.++..+.|++|+++++++||+....--+.+ ..--..+.-+++..-|.+.|-++.+..
T Consensus 35 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 105 (344)
T 3kjx_A 35 GDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV 105 (344)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 468899999999999999998643211111 111245667888888888888876643
No 353
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=32.86 E-value=24 Score=27.92 Aligned_cols=84 Identities=11% Similarity=0.159 Sum_probs=51.9
Q ss_pred CCchhhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh---HHHHh
Q 022049 79 LPADVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY---RAKLA 150 (303)
Q Consensus 79 l~~~~~~~im~Ave~~----g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f---Rs~l~ 150 (303)
+...+-..+.+.+... |-++ +..++|.+-|+|.+.++++|..|.++ |-|+... |-=.|+=+..- +..++
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~~-~~G~~V~~~~~~~~~~~~~ 88 (126)
T 3ic7_A 12 IYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQ--EVIYNKR-GIGFFVASGAKMLIHSLRK 88 (126)
T ss_dssp CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTT--TSEEEET-TTEEEECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEEc-CCccEEccCcHHHHHHHHH
Confidence 3344455555666543 4556 88899999999999999999999976 4565543 33355555443 33333
Q ss_pred hhhHHHhHHHHHHHH
Q 022049 151 AKSFRLKVEPVIDKA 165 (303)
Q Consensus 151 ~Ks~r~rlq~~~~k~ 165 (303)
.+.++..++.+....
T Consensus 89 ~~~~~~~le~~~~~~ 103 (126)
T 3ic7_A 89 EQFLKEEVGSFFRQL 103 (126)
T ss_dssp TTCCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555566655544
No 354
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.56 E-value=20 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=25.0
Q ss_pred chhhHHHHHHH----HhcCCceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~rvTvgDVAa~aGLsl~eA 114 (303)
...+++|++|. .+. ..+|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~ 49 (190)
T 2v57_A 13 ERTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTV 49 (190)
T ss_dssp CHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHH
Confidence 35566776654 455 8899999999999997653
No 355
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=32.51 E-value=1.1e+02 Score=27.59 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred CchhhHHHHHHH-HhcCCceeehhhh---hhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHH
Q 022049 80 PADVRNRAMDAV-DACNRRVTIGDVA---GKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAK 148 (303)
Q Consensus 80 ~~~~~~~im~Av-e~~g~rvTvgDVA---a~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~ 148 (303)
||..|.-|+..+ ...|..+.++++. +.-|++-.-++.+|--|+++ |-|+.++.| |.....-+..
T Consensus 2 ~~~arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~--G~L~~~~~G---Y~LT~~~~~~ 69 (247)
T 3kfw_X 2 SLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGA--GDLVRSADG---YRLSDRLLAR 69 (247)
T ss_dssp CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHT--TSEEEETTE---EEECHHHHHH
T ss_pred CCCCceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCeeccCCc---eeeCHHHHHH
Confidence 678888899965 7779999999665 67999999999999999875 789999999 8887755443
No 356
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.21 E-value=9.6 Score=33.22 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=0.0
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHH
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
.+|+.|||..+|+|...+-++|+.
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCC
Confidence 589999999999999998887764
No 357
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.83 E-value=17 Score=24.86 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHH
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe 115 (303)
+.+..++-++.++.| .|..|+|...|++.....
T Consensus 9 ~~~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i~ 41 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKG--VSQEELADLAGLHRTYIS 41 (77)
T ss_dssp HHHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHH
Confidence 344455555555554 799999999999976653
No 358
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=31.67 E-value=52 Score=27.34 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccc
Q 022049 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (303)
Q Consensus 87 im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesG 135 (303)
+.-+++. .+.||-++...||++-..+|..|.+|. +.|=.++--.+|
T Consensus 25 la~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL~-elgI~~~FvQ~G 70 (117)
T 3ke2_A 25 LAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASFA-DIGIEVEFVQDG 70 (117)
T ss_dssp HHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTGG-GGTCEEEEECCT
T ss_pred HHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHhh-hCCeEEEEEecc
Confidence 4556777 667999999999999999999999999 777777655445
No 359
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=31.66 E-value=27 Score=30.03 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred chhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
...|++|++|. .+.||. +|+.|||.++|++....
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tl 78 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNA 78 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHH
Confidence 35566776654 567876 89999999999997653
No 360
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=31.65 E-value=77 Score=24.00 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=36.8
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-CCCHHHHHHHHHHHHhhc
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~a-GLsl~eAe~aL~aLAad~ 125 (303)
....+-.|+..+.+ +..|++|+|... |++...+-+.|..|..+.
T Consensus 20 ~~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G 64 (112)
T 1z7u_A 20 NGKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDG 64 (112)
T ss_dssp CSTTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 33445678888874 468999999999 999999999999998875
No 361
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=31.38 E-value=28 Score=27.02 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.5
Q ss_pred cchhhhhhhcccCCCCCCCchHHHH--HHHHHHHHHhcCCeEeeec
Q 022049 248 MNFIKSVFSFVFGEGDPNQGIEEKR--WKLIGEYIASNGGVVTAEE 291 (303)
Q Consensus 248 mnFlEsVFSFvFGDGDPN~dlEerR--wq~Ig~~Ir~N~GvV~AEQ 291 (303)
|+.+|.+|-. +|+.+-|+.. -+.+..+|.+|||.|.-.|
T Consensus 4 M~~YE~~~Il-----~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e 44 (99)
T 3r3t_A 4 MRKYEIMYII-----RPGVEEEAQKALVERFAGVLTNNGAEIINTK 44 (99)
T ss_dssp CCCCCCCCCC-----CTTSCHHHHHHHHHHHHHHHHTTTCCCCCCC
T ss_pred CcceeEEEEE-----CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 7888888876 6765544332 2346889999999987543
No 362
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=31.15 E-value=29 Score=30.17 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=39.3
Q ss_pred hhHHHHHHHHh----cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 83 VRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 83 ~~~~im~Ave~----~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
+.+.+.+.+.. -|.++ |..++|.+-|+|...+++||..|.++. -|+ ...|-=.|+=+
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G--~i~-~~~g~G~~V~~ 76 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEG--LLY-RLKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT--SEE-ECTTSCEEECC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--cEE-EeCCCeEEEeC
Confidence 33444555544 35566 889999999999999999999999874 444 33344345543
No 363
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=31.10 E-value=10 Score=33.00 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=0.0
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHH
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~aL 121 (303)
++|+.|||..+|+|...+-++|...
T Consensus 2 ~~ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 2 LANIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 4799999999999999999998864
No 364
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.98 E-value=28 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCchhhHHHHHHHHhcCCcee
Q 022049 78 KLPADVRNRAMDAVDACNRRVT 99 (303)
Q Consensus 78 ~l~~~~~~~im~Ave~~g~rvT 99 (303)
.+..+.+++|+++++++||+..
T Consensus 29 ~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 6789999999999999999754
No 365
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=30.88 E-value=27 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCCchhhHHHHHHHHhcCCcee
Q 022049 78 KLPADVRNRAMDAVDACNRRVT 99 (303)
Q Consensus 78 ~l~~~~~~~im~Ave~~g~rvT 99 (303)
.+..+.+++|+++++++||+..
T Consensus 35 ~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 4789999999999999999743
No 366
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.87 E-value=47 Score=29.49 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=40.5
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEE
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlY 139 (303)
++.+..++-++ ..+..|+.++|...|++..++...|..|+... -++-..+|-|.-
T Consensus 164 ~~~~~~l~~~l--~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~--~v~~~~~~~~~~ 218 (232)
T 2qlz_A 164 MTQLAILHYLL--LNGRATVEELSDRLNLKEREVREKISEMARFV--PVKIINDNTVVL 218 (232)
T ss_dssp TTHHHHHHHHH--HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTS--CEEEETTTEEEE
T ss_pred ccHHHHHHHHH--hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcC--CeEEecCCeEEe
Confidence 44555555553 35789999999999999999999999998764 444455555543
No 367
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=30.74 E-value=57 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=27.8
Q ss_pred HHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHH
Q 022049 85 NRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 85 ~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
.++++.++++- ...|+.|+|...|+|...-++.+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 46777777663 5899999999999998877655544
No 368
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.63 E-value=1.3e+02 Score=28.07 Aligned_cols=69 Identities=6% Similarity=0.110 Sum_probs=52.5
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHH
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs 147 (303)
|-...|.+++..+-+-=-+||+..+|..-|++.+++|+.|..|-.+..=+=....-.-+|+....+-|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 344566777666767778999999999999999999999999999986666666666688888766654
No 369
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=30.46 E-value=28 Score=31.58 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=38.3
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHH
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs 147 (303)
+..|+.|+|.++|++..-.++=|+.|++ .|-|+-.++|. .|.-.+--+.
T Consensus 70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~--~g~l~~~~~~~-~y~~t~~s~~ 118 (369)
T 3gwz_A 70 GPRTATALAEATGAHEQTLRRLLRLLAT--VGVFDDLGHDD-LFAQNALSAV 118 (369)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSSEECSSTT-EEECCHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCCEEEeCCCc-eEecCHHHHH
Confidence 4699999999999999999999999988 57777766664 3665554443
No 370
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.19 E-value=44 Score=31.30 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhc--CCceE-eeccccEEEEcChhhHHHHhhhhHHHhHHHHHHHHhhhhH
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADT--DGFLE-VSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAE 170 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~--~G~Le-VsesGdIlYvFP~~fRs~l~~Ks~r~rlq~~~~k~w~v~~ 170 (303)
...+|..++|...|++.+++|.-|-..-++. .|.|. |+..=++-++=|+.++.- +=+..+.+|+.|-.++..++.
T Consensus 305 ~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~-q~~~l~~~L~~W~~~v~~l~~ 382 (393)
T 4b4t_O 305 IRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGD-QITKMKDRLVEWNDQVEKLGK 382 (393)
T ss_dssp CCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred CCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999998888777665 55552 222112234447666541 114456678887777666543
No 371
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=30.13 E-value=31 Score=31.09 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=30.0
Q ss_pred eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEE
Q 022049 98 VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (303)
Q Consensus 98 vTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYv 140 (303)
||..|||..+|++.+.+++-=++| |.-.+++.++.+|.
T Consensus 79 vT~~eVAe~aGv~~e~~rr~wRal-----Gfp~~~d~d~r~ft 116 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRAV-----GLARVDDPDAVVHM 116 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHH-----CCCCCCCTTCCCEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHh-----CCCCCCCCCCccCC
Confidence 599999999999999987766666 55555555777776
No 372
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=29.75 E-value=62 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=26.8
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+..+|+.++|.+.|+|..-+++-|..|...
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456999999999999999999999999765
No 373
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=29.74 E-value=62 Score=24.76 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~a-GLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~ 144 (303)
-+-.|+..+.....++|++|++... |++-...-+.|..|..+ |-++-...-.+.|.-...
T Consensus 28 wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~--GlV~r~~~r~~~y~LT~~ 88 (111)
T 3df8_A 28 YTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS--GLVERRSGQITTYALTEK 88 (111)
T ss_dssp THHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT--TSEEEEESSSEEEEECHH
T ss_pred cHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC--CCEEEeecCcEEEEECcc
Confidence 3567888887444446699999999 99999999999999876 455544445566665543
No 374
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=29.72 E-value=34 Score=27.92 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHhc--CCceeehhhhhhcCCC--HHHHHHHHHHH--HhhcCCceEeeccccEE
Q 022049 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQAL--AADTDGFLEVSDEGDVL 138 (303)
Q Consensus 82 ~~~~~im~Ave~~--g~rvTvgDVAa~aGLs--l~eAe~aL~aL--Aad~~G~LeVsesGdIl 138 (303)
+.+.+|.++|.+. |.-+|-+|||...|.+ ...+-.+|... +-...||==|..+|.|-
T Consensus 5 ~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~G~p~aaRaVG~Al~~Np~~i~IPCHRVV~s~G~l~ 67 (116)
T 3gva_A 5 EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTIS 67 (116)
T ss_dssp HHHHHHHHHHTTSCTTCBBCHHHHHHHTTCTTCHHHHHHHHHTSCTTCSSCGGGBCCTTSBCC
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCCcHHHHHHHHHhCCCCcCCCceEEECCCCCCC
Confidence 4789999999998 5667788999999974 33443444432 23468999999999986
No 375
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=29.41 E-value=32 Score=30.68 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=33.6
Q ss_pred hhHHHHHHHHh----cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~----~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
+...+.+.+.. -|-++ |..++|.+-|+|...+++||..|.++.
T Consensus 34 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 81 (272)
T 3eet_A 34 VAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEG 81 (272)
T ss_dssp HHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 34445555544 35567 889999999999999999999999874
No 376
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=29.28 E-value=15 Score=27.53 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHH
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~aL 121 (303)
|+..|+.+.|...|+++++..++|.++
T Consensus 47 g~~~TL~~aa~~~gid~d~l~~~L~~~ 73 (81)
T 2fi0_A 47 GRKVSLKQGSKLAGTPMDKIVRTLEAN 73 (81)
T ss_dssp HHHCBHHHHHHHHTCCHHHHHHHHHHT
T ss_pred cccCcHHHHHHHcCCCHHHHHHHHHHc
Confidence 466999999999999999998888774
No 377
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=29.22 E-value=38 Score=29.51 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=42.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhh
Q 022049 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (303)
Q Consensus 80 ~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~f 145 (303)
....+-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|-|+.. +| .|.-.+.-
T Consensus 24 ~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~~-~~--~y~~t~~~ 82 (335)
T 2r3s_A 24 KAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTKQ-AE--GYRLTSDS 82 (335)
T ss_dssp HHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE-TT--EEEECHHH
T ss_pred HHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEec-CC--EEecCHHH
Confidence 33444556667764 5799999999999999999888888886 4666642 23 56655544
No 378
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=28.86 E-value=1.5e+02 Score=24.66 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=36.9
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-cccEEEEcChhh
Q 022049 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVLYVFPNNY 145 (303)
Q Consensus 93 ~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse-sGdIlYvFP~~f 145 (303)
+-|.+++..++|.+-|+|..-++++|..|.++ |-+++.. .| .||-+-+.
T Consensus 35 ~pG~~L~E~~La~~lgVSRtpVREAl~~L~~e--Glv~~~~~~G--~~V~~~~~ 84 (222)
T 3ihu_A 35 VPGQRLVETDLVAHFGVGRNSVREALQRLAAE--GIVDLQRHRG--AVIRRLSL 84 (222)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEECSTTC--EEECCCCH
T ss_pred CCCCccCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEecCCC--eEEecCCH
Confidence 34788998899999999999999999999986 5566543 34 34444333
No 379
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.84 E-value=1.4e+02 Score=25.81 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=45.2
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHH
Q 022049 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs 147 (303)
+...+++..+..+.+.=.++++.++|..-|++.+++|+.|..+..|..=+=.....-.+|..+...-+.
T Consensus 338 l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~ 406 (434)
T 4b4t_Q 338 LYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQD 406 (434)
T ss_dssp HHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC------
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchh
Confidence 334445555666666667899999999999999999999999988764333334434466666655443
No 380
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.84 E-value=45 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHH
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eA 114 (303)
|.+-+++-++.++.| .|..|+|.++|++....
T Consensus 1 m~~~~~lk~~r~~~g--lsq~~lA~~~gis~~~i 32 (77)
T 2k9q_A 1 MELSNELKVERIRLS--LTAKSVAEEMGISRQQL 32 (77)
T ss_dssp CCHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred CcHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHH
Confidence 345566666666665 68999999999987665
No 381
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.73 E-value=73 Score=21.60 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=33.1
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G 127 (303)
+.|+..-+ .|+..+ ....|..|||...|+|...++.-+..+-...+.
T Consensus 10 ~~L~~~e~-~il~~~---~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKRER-EVFELL---VQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHH-HHHHHH---TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHH-HHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 44555443 334444 344599999999999999999988887766543
No 382
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=28.46 E-value=41 Score=26.94 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHhcC-------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 82 DVRNRAMDAVDACN-------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 82 ~~~~~im~Ave~~g-------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+.++|+...+..+. .++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 202 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE--GLVKLS 202 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEeC
Confidence 34455555554432 27899999999999999999999999875 555553
No 383
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=28.39 E-value=30 Score=30.04 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHh----cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 022049 81 ADVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 81 ~~~~~~im~Ave~----~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV 131 (303)
..+...+.+.+.. -|-++ |..++|.+-|+|...+++||..|.++. -|+.
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G--~i~~ 65 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEG--LVVR 65 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTT--SEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEE
Confidence 3445566666664 35566 888999999999999999999999874 4544
No 384
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=28.03 E-value=59 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 86 ~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
..+..++-...+.|+.|||.+-||+.++....|..++...
T Consensus 21 t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G 60 (122)
T 3iuo_A 21 MKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSG 60 (122)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 4466666677889999999999999999999999997543
No 385
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=27.86 E-value=27 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.1
Q ss_pred CchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHH
Q 022049 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (303)
Q Consensus 80 ~~~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~ 112 (303)
..+.|++|++|. .+.|+ .+|+.|||.++|++..
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~ 47 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVG 47 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCcc
Confidence 345677777765 45676 7899999999999864
No 386
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=27.52 E-value=89 Score=23.89 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=40.6
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhh--------hcCCCHHHHHHHHHHHHhhcCC
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAG--------KAGLKLNEAQKALQALAADTDG 127 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa--------~aGLsl~eAe~aL~aLAad~~G 127 (303)
.++.|.+.+.+.+.++++|. .|+.|+.+ .+||+..++.+-...|.....+
T Consensus 6 ~~~~p~Lse~~~~~L~~~~I-~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~ 63 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHRI-KTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSA 63 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTTC-CCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCS
T ss_pred cccCCCCCHHHHHHHHHCCC-CCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 45667888999999999987 57776654 5799999998888888877766
No 387
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.33 E-value=33 Score=29.77 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=18.1
Q ss_pred CCCCchhhHHHHHHHHhcCCceee-------------hhhhhh---cCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTI-------------GDVAGK---AGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTv-------------gDVAa~---aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
.++..+.|++|+++++++||+... |=|... ..--..+.-+++..-|.+.|-+|.+..
T Consensus 28 ~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 28 GYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD 100 (338)
T ss_dssp --------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 468889999999999999997532 211111 111135666788888888888776644
No 388
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=27.33 E-value=2.4e+02 Score=23.86 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhcC-Cceee--hhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChh
Q 022049 83 VRNRAMDAVDACN-RRVTI--GDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (303)
Q Consensus 83 ~~~~im~Ave~~g-~rvTv--gDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~ 144 (303)
..+.+++++-.++ ..+|+ .|+|...|++...+.+.|..|.++ |-++-..++ .++.=+.+
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~--GlV~r~~~~-~v~LT~~G 68 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD--GLLRVAGDR-HLELTEKG 68 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEECTTS-CEEECHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeCCc-cEEECHHH
Confidence 3455666654331 23666 999999999999999999999986 566665543 44444444
No 389
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=27.30 E-value=44 Score=30.47 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCchhhHHHHHHHHhcC-CceeehhhhhhcCC--CHH---HHHHHHHHHHhhcCCceEee
Q 022049 79 LPADVRNRAMDAVDACN-RRVTIGDVAGKAGL--KLN---EAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g-~rvTvgDVAa~aGL--sl~---eAe~aL~aLAad~~G~LeVs 132 (303)
|-.+.+-.|.+++.+.| ...|+.|+|+++|+ +.. -.++=|++|++ .|-|+.+
T Consensus 37 l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~--~g~l~~~ 94 (364)
T 3p9c_A 37 LKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLAS--YNVVTCL 94 (364)
T ss_dssp HHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHh--CCCEEEe
Confidence 33445556778888875 67999999999997 544 56667777776 4555544
No 390
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=27.12 E-value=31 Score=29.33 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=24.6
Q ss_pred hhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
..|++|++|. .+.|+ .+|+.+||.++|++....
T Consensus 29 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tl 66 (241)
T 2hxi_A 29 WSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSL 66 (241)
T ss_dssp CCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHH
Confidence 4456776665 45586 689999999999997653
No 391
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=27.11 E-value=52 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.016 Sum_probs=35.1
Q ss_pred HHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcC
Q 022049 88 MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (303)
Q Consensus 88 m~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~ 126 (303)
.=|.+.+|.+.|+.||+..+|++..+.++.+..|....+
T Consensus 156 y~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 156 YIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 456788999999999999999999999999999998766
No 392
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=27.00 E-value=54 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=34.2
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 94 ~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
-|-++ |..++|.+-|+|...+++||..|.++ |-|+. .|-=.|+=+
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--G~i~~--~g~Gt~V~~ 77 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVRQALRELLID--GRVER--RGRTTVVAR 77 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE--ETTEEEECC
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe--CCCEEEEcc
Confidence 45666 88999999999999999999999986 55555 333344433
No 393
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=26.78 E-value=21 Score=28.76 Aligned_cols=43 Identities=5% Similarity=-0.027 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhcCC--ceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNR--RVTIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~--rvTvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
.+-.|+..+.+.+. .+|+.|+|...|++...+-+.|..|..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G 114 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKG 114 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc
Confidence 45678999988775 59999999999999999999999999874
No 394
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=26.66 E-value=31 Score=29.86 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=20.0
Q ss_pred CCCCchhhHHHHHHHHhcCCcee
Q 022049 77 DKLPADVRNRAMDAVDACNRRVT 99 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvT 99 (303)
.++..+.|++|+++++++||+..
T Consensus 27 ~~vs~~tr~rV~~aa~~lgY~pn 49 (332)
T 2hsg_A 27 PNVKPSTRKKVLETIERLGYRPN 49 (332)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCcC
Confidence 46789999999999999999753
No 395
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=26.66 E-value=18 Score=30.28 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=22.8
Q ss_pred hHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 022049 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (303)
Q Consensus 84 ~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~e 113 (303)
|++|++| +.+.|+ .+|+.+||.++|++...
T Consensus 5 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 39 (202)
T 4ac0_A 5 KSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPT 39 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCchh
Confidence 4555554 455688 79999999999998754
No 396
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=26.65 E-value=87 Score=22.31 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=29.8
Q ss_pred ccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHH
Q 022049 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eA 114 (303)
..+.+.|.+-+++-+.-++.| .|..|+|...|++....
T Consensus 6 ~~~~~~~~~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i 43 (91)
T 1x57_A 6 SGDRVTLEVGKVIQQGRQSKG--LTQKDLATKINEKPQVI 43 (91)
T ss_dssp CSSCCCCHHHHHHHHHHHTTT--CCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 346677888888877776665 79999999999987655
No 397
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=26.41 E-value=1.3e+02 Score=25.04 Aligned_cols=56 Identities=9% Similarity=0.259 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEee-ccccEEEEcChh
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVS-DEGDVLYVFPNN 144 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~a-----GLsl~eAe~aL~aLAad~~G~LeVs-esGdIlYvFP~~ 144 (303)
.+..|.+.+++.+ ..|+.|++..- .++-....+.|..| |-.+|. ++|.-.|..|.+
T Consensus 6 R~~~I~~li~~~~-~~tq~eL~~~L~~~G~~VtqaTisRDL~eL-----~~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 6 RHIKIREIIMSND-IETQDELVDRLREAGFNVTQATVSRDIKEM-----QLVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp HHHHHHHHHHHSC-CCSHHHHHHHHHHTTCCCCHHHHHHHHHHT-----TCEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHHHCC-CccHHHHHHHHHHcCCCcCHHHHHHHHHHc-----CCeEEECCCCCEEEEeCCC
Confidence 3445566666554 58999999765 56666667777777 567776 579999999976
No 398
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=26.40 E-value=56 Score=31.09 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=48.9
Q ss_pred CcccccCCCCchhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHH
Q 022049 71 GRIVESDKLPADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (303)
Q Consensus 71 ~~~~~~~~l~~~~~~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs 147 (303)
+..|+-..||..+.+..+++++..- +..++.++|.+-|+++.+ |.+ -|-|++. ||=.|.++.=+|.
T Consensus 197 ~~Li~LP~lPi~ld~~~~~~lk~~~~~g~~~~~~la~~lgi~v~~----L~~-----~gli~~~--~~~~~~~~~w~~~ 264 (324)
T 3qyf_A 197 NDVVILPSPPITIRPKYLDWLIRFAISGYTLSEKRAEELGIPVRL----LEA-----KMLVERK--GEDAYRLKDWVRK 264 (324)
T ss_dssp TEEEEECCCCEEECHHHHHHHHHHHHHCSEEEHHHHHHTTCCHHH----HHH-----TTSEEEE--TTTEEEECHHHHH
T ss_pred CceEEcCCCCcccCHHHHHHHHHHHhcCCCCHHHHHHHhCCCHHH----HHH-----CCCeEec--CCCceehHHHHHH
Confidence 5778889999999999999998773 678999999999999763 322 2445544 4445666655555
No 399
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.34 E-value=14 Score=33.23 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=0.0
Q ss_pred cccccCCCCchhhHHHHHHHHhcCCceeehhhhh--------hcCCCHHHHHHHHHHHHhh
Q 022049 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAG--------KAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 72 ~~~~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa--------~aGLsl~eAe~aL~aLAad 124 (303)
+..+-++|| .+.+...+.+++.|+ .|+.|++. .+|++.++|++.|.++...
T Consensus 10 ~~~~~~~l~-g~~~~~~~~l~~~g~-~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~ 68 (324)
T 2z43_A 10 NIKTINDLP-GISQTVINKLIEAGY-SSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDA 68 (324)
T ss_dssp -------------------------------------------------------------
T ss_pred CCccHHHcC-CCCHHHHHHHHHcCC-CcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhh
Confidence 445677888 778999999999887 57777763 5799999998888876543
No 400
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.25 E-value=1.2e+02 Score=22.15 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=38.3
Q ss_pred ccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
-..+++++.+.+|++.++ .| .++.++|...|++...+.+-+......
T Consensus 14 m~~~~s~~~r~~i~~~~~-~g--~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 14 NGRPLPNNIRLKIVEMAA-DG--IRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TTSCCCHHHHHHHHHHHH-TT--CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHH-cC--CCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 345789999999998875 33 688999999999999998888876543
No 401
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=25.95 E-value=79 Score=27.34 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHHHHh-----hcCCceEeeccccEEEEcCh
Q 022049 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAA-----DTDGFLEVSDEGDVLYVFPN 143 (303)
Q Consensus 81 ~~~~~~im~Ave~~--g~rvTvgDVAa~aGLsl~eAe~aL~aLAa-----d~~G~LeVsesGdIlYvFP~ 143 (303)
.+.+.++.+++.+. |.-+|-||+|...|.+ ++.-=.++++ ...||==|..+| + --|..
T Consensus 78 t~Fq~~Vw~~l~~IP~G~t~TYg~iA~~~G~p---~RaVG~Al~~Np~~i~iPCHRVv~~~G-l-~gy~g 142 (167)
T 2g7h_A 78 PEFTKKVLDIVKDIEFGKTLTYGDIAKKLNTS---PRAVGMALKRNPLPLIIPCHRVVAKNS-L-GGYSY 142 (167)
T ss_dssp SSCCHHHHHHHTTCCTTCCEEHHHHHHHHTSC---HHHHHHHHHTCSCTTTSGGGGEECSSS-C-CCSSS
T ss_pred HHHHHHHHHHhcCCCCCCEeeHHHHHHHhCCC---HHHHHHHHHhCCCCCccCceeEECCCC-C-CCCCc
Confidence 67889999999998 5557889999999999 4443344443 458999999999 4 44543
No 402
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=25.91 E-value=80 Score=24.99 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=28.5
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQ--NLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEeC
Confidence 5788999999999999999999999876 455543
No 403
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=25.86 E-value=33 Score=29.82 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=25.8
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 80 ~~~~~~~im~A----ve~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
....|++|++| +.+.||. +|+.|||.++|++....
T Consensus 118 ~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtl 157 (311)
T 4ich_A 118 QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATI 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhH
Confidence 34556666665 4667875 99999999999987643
No 404
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.73 E-value=78 Score=25.63 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHhcC--------------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 81 ADVRNRAMDAVDACN--------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 81 ~~~~~~im~Ave~~g--------------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
.+..+|+...+..+. .++|..|+|...|++...+-+.|..|..+ |-+++..
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~--g~I~~~~ 197 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE--GYISRQG 197 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT--TSSEECS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEEcC
Confidence 345677777776553 23788999999999999999999999765 4566643
No 405
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.54 E-value=74 Score=21.00 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 022049 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (303)
Q Consensus 95 g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G 127 (303)
..+.|..|||...|+|...++.-+..+-...+.
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 345699999999999999999888877665543
No 406
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=25.54 E-value=29 Score=28.42 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCeEeee
Q 022049 274 KLIGEYIASNGGVVTAE 290 (303)
Q Consensus 274 q~Ig~~Ir~N~GvV~AE 290 (303)
+.+.++|++|||.|..|
T Consensus 33 d~L~~lI~~nGG~Vl~~ 49 (106)
T 2l42_A 33 DQLARLIRANGGEVLDS 49 (106)
T ss_dssp HHHHHHHHTTTSCCCEE
T ss_pred HHHHHHHHhcCcEEhhh
Confidence 56899999999999765
No 407
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=25.51 E-value=78 Score=25.31 Aligned_cols=37 Identities=5% Similarity=0.066 Sum_probs=28.6
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 87 im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+|-.+-+...+ |+.|+|.+.|+|..-.++-|..|...
T Consensus 14 ~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 14 ILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443336 99999999999999999999999764
No 408
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=25.51 E-value=72 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=40.6
Q ss_pred chhhHHHHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeeccc
Q 022049 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEG 135 (303)
Q Consensus 81 ~~~~~~im~Ave~~--g~rvTvgDVAa~aGLsl~eAe~aL~a--LAad~~G~LeVsesG 135 (303)
.+.+.++.+++.+. |.-+|-+|||...|.+-..+-.++.. ++-...||==|..+|
T Consensus 70 t~fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~RaVG~A~~~np~~~~iPcHRVv~~~G 128 (156)
T 1wrj_A 70 NEFRIRVFKEVMRIKWGEVRTYKQVADAVKTSPRAVGTALSKNNVLLIIPCHRVIGEKS 128 (156)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHTTSCHHHHHHHHHTCSBTTTSCGGGEECSSS
T ss_pred CHHHHHHHHHHhCCCCCceEcHHHHHHHhCCCccHHHHHHHhCCCCCccCCCeEECCCC
Confidence 46788999999998 55677889999999887333233322 123469999999999
No 409
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=25.38 E-value=55 Score=29.25 Aligned_cols=69 Identities=10% Similarity=0.117 Sum_probs=46.9
Q ss_pred cccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHHH
Q 022049 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKL 149 (303)
Q Consensus 74 ~~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~l 149 (303)
+.+--|....+-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|-|+..+ + .|.-.......|
T Consensus 43 ~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~--~-~y~~t~~~~~~l 111 (359)
T 1x19_A 43 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLED--G-KWSLTEFADYMF 111 (359)
T ss_dssp HHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--T-EEEECHHHHHHS
T ss_pred HHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEeeC--C-eEecCHHHHHHh
Confidence 33434444555566666654 5699999999999999999888888886 56666543 3 676665444433
No 410
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=25.29 E-value=91 Score=28.07 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=42.6
Q ss_pred CCchhhHHHHHHHHhcCC---ceeehhhhhhcCC------CHHHHHHHHHHHHhhcCCceEee----ccc--cEEEEcCh
Q 022049 79 LPADVRNRAMDAVDACNR---RVTIGDVAGKAGL------KLNEAQKALQALAADTDGFLEVS----DEG--DVLYVFPN 143 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g~---rvTvgDVAa~aGL------sl~eAe~aL~aLAad~~G~LeVs----esG--dIlYvFP~ 143 (303)
|-...+-.|.+++.+.|. ..|+.|+|+++|+ ...-.++=|+.|++ .|-|+.. ++| +-.|.-..
T Consensus 41 l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~g~~~~~y~~t~ 118 (372)
T 1fp1_D 41 LNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS--YSVLTSTTRTIEDGGAERVYGLSM 118 (372)
T ss_dssp HHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH--TTSEEEEEEECTTSCEEEEEEECT
T ss_pred HHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh--CCceEecccccCCCCcCCeEecCH
Confidence 334445566777776542 2999999999999 55667777777776 5666655 445 55677554
No 411
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.19 E-value=68 Score=23.98 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=28.7
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G 127 (303)
.+.|..+||...|++...++.-+..+-.+.+.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 55799999999999999999999998888765
No 412
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=25.02 E-value=60 Score=28.45 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccc
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesG 135 (303)
..+-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|-|+-.++|
T Consensus 28 ~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~--~g~l~~~~~~ 77 (334)
T 2ip2_A 28 ATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVA--FEIFQGDTRD 77 (334)
T ss_dssp HHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEETTT
T ss_pred HHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCceEecCCC
Confidence 344456677754 4699999999999999999999999886 4555544433
No 413
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=24.93 E-value=53 Score=29.10 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=43.7
Q ss_pred ccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
.+.-|....+-.|.+.+. ++..|+.|+|.++|++..-.++-|+.|++ -|-|+..++| .|.-.
T Consensus 32 ~~~~l~~~~~l~i~~~l~--~~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~~~~g--~y~~t 93 (360)
T 1tw3_A 32 TPMVVRTAATLRLVDHIL--AGARTVKALAARTDTRPEALLRLIRHLVA--IGLLEEDAPG--EFVPT 93 (360)
T ss_dssp HHHHHHHHHHTTHHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEETT--EEEEC
T ss_pred HHHHHHHHHHhCHHHHHh--CCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEecCCC--eEEeC
Confidence 334444555666777774 35689999999999999999999998876 4556554455 35543
No 414
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=24.64 E-value=53 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=23.8
Q ss_pred cchhhhhhhcccCCCCCCCchHHHH--HHHHHHHHHhcCCeEeeec
Q 022049 248 MNFIKSVFSFVFGEGDPNQGIEEKR--WKLIGEYIASNGGVVTAEE 291 (303)
Q Consensus 248 mnFlEsVFSFvFGDGDPN~dlEerR--wq~Ig~~Ir~N~GvV~AEQ 291 (303)
|+.+|.+|-. +|+.+-|+.. -+.+..+|.+|||.|.--|
T Consensus 1 M~~YE~~~Il-----~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e 41 (101)
T 1cqm_A 1 MRRYEVNIVL-----NPNLDQSQLALEKEIIQRALENYGARVEKVA 41 (101)
T ss_dssp CEEEEEEEEE-----CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCceeEEEEE-----CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555666544 5654444332 2346788999999987543
No 415
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=24.62 E-value=83 Score=23.62 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc-CCCHHHHHHHHHHHHhhc
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~a-GLsl~eAe~aL~aLAad~ 125 (303)
.+-.|+.++. .+..|+.|+|... |++...+-+.|..|.++.
T Consensus 15 ~~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G 56 (107)
T 2hzt_A 15 WKXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADG 56 (107)
T ss_dssp THHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 3456888885 4579999999999 999999999999998764
No 416
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=24.50 E-value=91 Score=25.05 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHhcCC-------------ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 82 DVRNRAMDAVDACNR-------------RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 82 ~~~~~im~Ave~~g~-------------rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+.++|+...+..+.. ++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 159 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 220 (230)
T 3iwz_A 159 DVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQAD--GLLHAR 220 (230)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEEC
Confidence 345666666654321 3688999999999999999999999875 455543
No 417
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=24.36 E-value=29 Score=31.81 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
.+|++.+. .+.+|-.|+|.++|||...+.+-+..|.++
T Consensus 23 ~~il~~l~--~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 23 SRILKRIM--KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp CCSHHHHH--HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35789998 567999999999999999999999999875
No 418
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=24.29 E-value=16 Score=31.88 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=0.4
Q ss_pred cCCCCchhhHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhc
Q 022049 76 SDKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 76 ~~~l~~~~~~~im~Ave~~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~ 125 (303)
++.+-..++.+|.+-.=+-|.++ |..++|.+-|+|...++++|..|.++.
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 68 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKG 68 (247)
T ss_dssp --------------------------------------------------C
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 33444445555554444456677 899999999999999999999998864
No 419
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=24.20 E-value=1.6e+02 Score=27.83 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=53.3
Q ss_pred cCCCCchhhHHHHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecccc-EEEEcChhhHHHHhhh
Q 022049 76 SDKLPADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFPNNYRAKLAAK 152 (303)
Q Consensus 76 ~~~l~~~~~~~im~Ave~~--g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGd-IlYvFP~~fRs~l~~K 152 (303)
.+.||.+.+. ++..+--. |..++...++.-.|.+.++++..|..|.+. +-+++..+|+ -.|.+..-+|..++.+
T Consensus 372 ~~~L~~~~~~-~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~--~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 372 VEMLREDIKD-YYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK--SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTSCTTTHH-HHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHhCCHHHHH-HHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC--cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 4566665543 33333322 667887777777899999999999999876 5667776665 4799999999988776
No 420
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.93 E-value=68 Score=25.49 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHhc----C---------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 81 ADVRNRAMDAVDAC----N---------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 81 ~~~~~~im~Ave~~----g---------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+..+|+...+..+ | ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 172 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE--GLIATA 172 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH--TSEEEE
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEec
Confidence 44567777777553 2 24788999999999999999999999876 456554
No 421
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.83 E-value=73 Score=21.09 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHH
Q 022049 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (303)
Q Consensus 83 ~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe 115 (303)
.-+++-+..++.| .|..|+|...|++.....
T Consensus 4 ~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i~ 34 (71)
T 1zug_A 4 LSERLKKRRIALK--MTQTELATKAGVKQQSIQ 34 (71)
T ss_dssp HHHHHHHHHHHTT--CCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHH
Confidence 4456666666665 699999999999976653
No 422
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=23.71 E-value=36 Score=29.05 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=24.0
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.|+ .+|+.+||.++|++....
T Consensus 7 tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tl 43 (234)
T 2opt_A 7 TQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASL 43 (234)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHH
Confidence 45666555 455686 699999999999997643
No 423
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=23.69 E-value=44 Score=27.73 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=30.2
Q ss_pred HHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 022049 87 AMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (303)
Q Consensus 87 im~Ave~~-g~rvTvgDVAa~aGLsl~eAe~aL~aLAad 124 (303)
+|-.+..+ +..+|..++|.+.|+|..-.++-|..|...
T Consensus 17 ~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 17 SILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444333 567999999999999999999999999875
No 424
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.61 E-value=72 Score=21.63 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eA 114 (303)
.+..++-+..++.| .|..|+|..+|++....
T Consensus 7 ~~~~~l~~~r~~~g--~sq~~lA~~~gis~~~i 37 (78)
T 3b7h_A 7 FVSEHLMELITQQN--LTINRVATLAGLNQSTV 37 (78)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 45566666666665 79999999999987665
No 425
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=23.53 E-value=93 Score=24.54 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.5
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
++|..|+|+..|++...+-+.|..|..+ |-+++.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQ--GLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEec
Confidence 4788999999999999999999999875 445544
No 426
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=23.46 E-value=61 Score=28.03 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=13.7
Q ss_pred CCCCchhhHHHHHHHHhcCCceee-------------hhhhhhcCCC-HHHHHHHHHHHHhhcCCceEe
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTI-------------GDVAGKAGLK-LNEAQKALQALAADTDGFLEV 131 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTv-------------gDVAa~aGLs-l~eAe~aL~aLAad~~G~LeV 131 (303)
.++..+.|++|+++++++||+... |=|....+-+ ..+.-+++..-|.+.|-+|.+
T Consensus 27 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 95 (330)
T 3ctp_A 27 GYVSEDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFL 95 (330)
T ss_dssp ---------------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHHhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 357888999999999999997532 1111111100 234556666667776666554
No 427
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.42 E-value=2.3e+02 Score=21.01 Aligned_cols=53 Identities=6% Similarity=0.060 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeeccccE
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDV 137 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aG----Lsl~eAe~aL~aLAad~~G~LeVsesGdI 137 (303)
..+-.||.++-++| .+|+.|+|...+ ++...+..-|..|..+ |-++-..+|.-
T Consensus 10 ~~q~~vL~~L~~~~-~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k--Glv~R~~~~r~ 66 (126)
T 1sd4_A 10 MAEWDVMNIIWDKK-SVSANEIVVEIQKYKEVSDKTIRTLITRLYKK--EIIKRYKSENI 66 (126)
T ss_dssp HHHHHHHHHHHHSS-SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEEEETTE
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC--CceEEEeCCCe
Confidence 34568999998876 599999999886 5888998889888875 67776666663
No 428
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.26 E-value=1.4e+02 Score=21.53 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCc
Q 022049 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGF 128 (303)
Q Consensus 78 ~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~ 128 (303)
+|+..-++ |+..+ -.+.|..|||...|++...++.-+..+-.+.+.+
T Consensus 21 ~Lt~~e~~-vl~l~---~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 21 QLTPRERD-ILKLI---AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GSCHHHHH-HHHHH---TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCHHHHH-HHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 45554443 33333 4557999999999999999999888776665543
No 429
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=23.15 E-value=42 Score=28.25 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=39.8
Q ss_pred hhHHHHHHHHh----cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcC
Q 022049 83 VRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (303)
Q Consensus 83 ~~~~im~Ave~----~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP 142 (303)
+-..|.+.+.. -|-+. |-.++|.+-|+|-..+++||..|.++ |-|++.. |.=.||=+
T Consensus 12 v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~e--Glv~~~~-g~G~~V~~ 73 (239)
T 1hw1_A 12 AEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARD--GWLTIQH-GKPTKVNN 73 (239)
T ss_dssp HHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TEEEEECC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEec-CCCcEeeC
Confidence 33445555544 35666 78899999999999999999999987 4565543 33345543
No 430
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.92 E-value=59 Score=28.51 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=15.5
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhhhcC-----------C---CHHHHHHHHHHHHhhcCCceEee
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-----------L---KLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aG-----------L---sl~eAe~aL~aLAad~~G~LeVs 132 (303)
.++..+.|++|+++++++||+....--+.+++ + -..+.-+++..-|.+.|-+|.+.
T Consensus 37 ~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 106 (355)
T 3e3m_A 37 SPISSETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLG 106 (355)
T ss_dssp ----------------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE
Confidence 46888999999999999999764321111111 1 12455677788888888777654
No 431
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=22.77 E-value=52 Score=27.94 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=37.0
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe--ec---cccEEEEcCh
Q 022049 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV--SD---EGDVLYVFPN 143 (303)
Q Consensus 94 ~g~rv-TvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV--se---sGdIlYvFP~ 143 (303)
-|-++ +-.++|.+-|+|..-+++||..|.++ |-+++ .. .|-.|-.++.
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~--GlV~~~~~~~~~~G~~V~~~~~ 77 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLREALRVLEAL--GTISTATGSGPRSGTIITAAPG 77 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEECCSTTSGGGCCEECCCCC
T ss_pred CCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeEeecccCCCCCceeeCCcc
Confidence 46677 56799999999999999999999987 46666 43 4666655554
No 432
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=22.69 E-value=90 Score=28.99 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=36.1
Q ss_pred hhhHHHHHH----HHhcCCceeehhhhhhc--CCCHHHHHHHHHHHHhh
Q 022049 82 DVRNRAMDA----VDACNRRVTIGDVAGKA--GLKLNEAQKALQALAAD 124 (303)
Q Consensus 82 ~~~~~im~A----ve~~g~rvTvgDVAa~a--GLsl~eAe~aL~aLAad 124 (303)
+-+.+|+++ .-+.++.|++.++|.+. |+|-...++.|..|...
T Consensus 17 eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~ 65 (338)
T 1stz_A 17 DRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65 (338)
T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 566778885 33457889999999998 99999999999999886
No 433
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=22.56 E-value=90 Score=25.19 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.8
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 97 rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHR--GWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEec
Confidence 4788999999999999999999999765 456653
No 434
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=22.55 E-value=60 Score=28.84 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=46.1
Q ss_pred ccccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcCh
Q 022049 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (303)
Q Consensus 73 ~~~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~ 143 (303)
.+.+.-|....+-.|.+++. ++..|+.|+|.++|++..-.++=|+.|++ -|-|+..++|+..|.-.+
T Consensus 27 ~~~~~~l~~~~~l~i~~~l~--~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~~~~~~~~y~~t~ 93 (374)
T 1qzz_A 27 LVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEGGEKQGRPLRPTR 93 (374)
T ss_dssp CHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEECCCC-CCCCEECT
T ss_pred hHHHHHHHHHHHcChHHHHh--CCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEEeCCCCeEEEECh
Confidence 33344444556667778884 34699999999999999999999999886 456665455533455543
No 435
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=22.43 E-value=1.3e+02 Score=27.18 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=44.3
Q ss_pred ccCCCCchhhHHHHHHHHhcCCce-----eehhhhhhcCCCHHHHHHHHHHHHhhc---CCceEee
Q 022049 75 ESDKLPADVRNRAMDAVDACNRRV-----TIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVS 132 (303)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~~g~rv-----TvgDVAa~aGLsl~eAe~aL~aLAad~---~G~LeVs 132 (303)
+.+.||++.|-+||+-|++++-.. =+-|.+..-+=.+..++.++..|..+. .++-+|+
T Consensus 110 ~~~~l~p~~r~~~~~~~~~l~e~~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~Va 175 (242)
T 3rag_A 110 STEDLPPADRARVMQVVEKLEDEVALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVS 175 (242)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHSCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred ccccCCcchhcchhhhhhhhcccCCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 888999999999999999854432 233666554459999999999999874 3566765
No 436
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.33 E-value=45 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=24.4
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 022049 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 83 ~~~~im~A----ve~~g~-rvTvgDVAa~aGLsl~eA 114 (303)
.|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 20 tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tl 56 (243)
T 2g7l_A 20 SRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASL 56 (243)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHH
Confidence 45666555 457787 699999999999997653
No 437
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=22.33 E-value=38 Score=29.85 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.6
Q ss_pred CCCCchhhHHHHHHHHhcCCc
Q 022049 77 DKLPADVRNRAMDAVDACNRR 97 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~r 97 (303)
.++..+.|++|+++++++||+
T Consensus 34 ~~Vs~~tr~rV~~~a~~lgY~ 54 (366)
T 3h5t_A 34 EQLSAELRQRILDTAEDMGYL 54 (366)
T ss_dssp GGSCHHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhCCC
Confidence 468899999999999999998
No 438
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=22.24 E-value=12 Score=31.07 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=55.3
Q ss_pred ehhhhhhcCC-CHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHHHhh------hhHHH-hHHHHHHHHh
Q 022049 100 IGDVAGKAGL-KLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAA------KSFRL-KVEPVIDKAK 166 (303)
Q Consensus 100 vgDVAa~aGL-sl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~l~~------Ks~r~-rlq~~~~k~w 166 (303)
+.+|...+|+ +.++|++++++...--+-+|.+.+.-++.=..|...|.++.. .-.+. ..++|++.+.
T Consensus 20 l~~V~~~~~~~~~~~A~~~~raVL~tLrdRL~~~ea~~laaqLP~~lr~~~~~~w~~~~~~~~~~~~~eFl~rV~ 94 (145)
T 2ysk_A 20 LKAIMEELGTEDRHKAYLALRAVLHALRDRLTVEEVAQLAAQLPMLVRGLYYEGWDPTGKPLKERHKEAFLAHVA 94 (145)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHTTCCTTSCCCCCCSHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Confidence 5688899999 888999999999999999999999999999999999999862 12333 5677777764
No 439
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=22.22 E-value=1.6e+02 Score=23.77 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=41.5
Q ss_pred CCchhhHHHHHHHHhcC----------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEE
Q 022049 79 LPADVRNRAMDAVDACN----------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g----------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIl 138 (303)
.-.+..+|+...+.++. ..+|..|+|...|++...+-+.|..|..+. |+ .+.|.|.
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g---i~-~~~~~i~ 215 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAG---VT-VKRNHAE 215 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT---EE-CCTTEEE
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCC---eE-eeCCEEE
Confidence 34566788888887653 235678999999999999999999998874 64 3445443
No 440
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=21.92 E-value=1.2e+02 Score=22.09 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.0
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHH
Q 022049 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 78 ~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
+.+.+.+..+++.++ .| .|+.+||.+.|++.....+-+..
T Consensus 22 ~ys~e~k~~~v~~~~-~g--~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 22 SLTPRDKIHAIQRIH-DG--ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCHHHHHHHHHHHH-HT--CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 566677777777774 33 69999999999998877665543
No 441
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=21.72 E-value=1.9e+02 Score=23.39 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=6.3
Q ss_pred HHhHHHHHHHHh
Q 022049 155 RLKVEPVIDKAK 166 (303)
Q Consensus 155 r~rlq~~~~k~w 166 (303)
+++-+-||+..+
T Consensus 86 kl~rkmwwkn~K 97 (119)
T 2kog_A 86 KLKRKYWWKNLK 97 (119)
T ss_dssp HHHHHHSCHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555666554
No 442
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=21.69 E-value=1.1e+02 Score=21.27 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=29.1
Q ss_pred CCCCchhhHHHHHHH-HhcCCceeehhhhhhcCCCHHHHHHHHHH
Q 022049 77 DKLPADVRNRAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (303)
Q Consensus 77 ~~l~~~~~~~im~Av-e~~g~rvTvgDVAa~aGLsl~eAe~aL~a 120 (303)
+.||..-++-+.-.. -..+...|..|||...|+|...+++-+..
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 457666554442222 11125789999999999999999874443
No 443
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.69 E-value=54 Score=28.46 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=16.8
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhhh--------------cCCCHHHHHHHHHHHHhhcCCceEeec
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGK--------------AGLKLNEAQKALQALAADTDGFLEVSD 133 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa~--------------aGLsl~eAe~aL~aLAad~~G~LeVse 133 (303)
.++..+.|++|+++++++||+....--+.+ ..--..+.-+++..-|.+.|-+|.+..
T Consensus 29 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 99 (339)
T 3h5o_A 29 QQVSEQLREKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN 99 (339)
T ss_dssp ----------------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 468889999999999999998643211111 111234566788888888887776543
No 444
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=21.53 E-value=1.1e+02 Score=24.22 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhcC-------------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 82 DVRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 82 ~~~~~im~Ave~~g-------------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
+..+|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 118 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 179 (202)
T 2zcw_A 118 RLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE--GYIRSG 179 (202)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEeC
Confidence 34556666665532 24688999999999999999999999765 556653
No 445
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.52 E-value=86 Score=25.25 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHhc----C----------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 81 ADVRNRAMDAVDAC----N----------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 81 ~~~~~~im~Ave~~----g----------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.+..+|+...+.++ | .++|..|+|+..|++...+-+.|..|..+ |-++..
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 200 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKM--GILERV 200 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEES
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEEc
Confidence 34556666665443 2 46899999999999999999999999765 567664
No 446
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=21.33 E-value=1.9e+02 Score=24.81 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=37.1
Q ss_pred cccccCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee-ccccE-EEEcChhhH
Q 022049 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-DEGDV-LYVFPNNYR 146 (303)
Q Consensus 72 ~~~~~~~l~~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs-esGdI-lYvFP~~fR 146 (303)
..++.+.+.. ++.+.+.+++.|..||.+-|+ +.|..| |-.+|. ++|.. +|..|.+-.
T Consensus 27 ~iI~~~~I~t--QeEL~~~L~~~Gi~vTQATlS-----------RDikEL-----~lvKv~~~~G~~~~Y~lp~~~~ 85 (170)
T 3lap_A 27 AILSSAQVRS--QNELAALLAAEGIEVTQATLS-----------RDLEEL-----GAVKLRGADGGTGIYVVPEDGS 85 (170)
T ss_dssp HHHHHSCCCS--HHHHHHHHHHTTCCCCHHHHH-----------HHHHHH-----TCEEECCTTCTTCEEECCC---
T ss_pred HHHHhCCCCC--HHHHHHHHHHcCCCcCchhHH-----------HHHHHc-----CcEEeecCCCCEEEEEECcccc
Confidence 4455555443 677888888888888776554 455555 556665 57888 999997644
No 447
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=21.32 E-value=26 Score=29.14 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=24.0
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 022049 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (303)
Q Consensus 82 ~~~~~im~Av----e~~g~r-vTvgDVAa~aGLsl~e 113 (303)
..|++|++|. .+.|+. +|+.+||.++|++...
T Consensus 4 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t 40 (207)
T 2vpr_A 4 LDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPT 40 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 3466676654 456764 9999999999998764
No 448
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.22 E-value=76 Score=27.45 Aligned_cols=56 Identities=7% Similarity=0.096 Sum_probs=15.4
Q ss_pred CCCCchhhHHHHHHHHhcCCceeeh-------------hhhhhcC-CCHHHHHHHHHHHHhhcCCceEee
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIG-------------DVAGKAG-LKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvg-------------DVAa~aG-Lsl~eAe~aL~aLAad~~G~LeVs 132 (303)
..+..+.|++|+++++++||+.... =+..... --..+.-+++..-|.+.|-++.+.
T Consensus 30 ~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 99 (332)
T 2o20_A 30 ANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILA 99 (332)
T ss_dssp --------------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCHHHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3578899999999999999975331 1111000 012355567777777777776554
No 449
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=20.87 E-value=1.6e+02 Score=25.64 Aligned_cols=51 Identities=14% Similarity=0.339 Sum_probs=36.5
Q ss_pred HHHHHH-HhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccE
Q 022049 86 RAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV 137 (303)
Q Consensus 86 ~im~Av-e~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdI 137 (303)
++++++ +..|..+++.++|...|++.+...+-|....-+. |-++.+..|.+
T Consensus 267 ~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~-gli~~~~~g~~ 318 (338)
T 3pfi_A 267 RYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLAN-GYIERTAKGRI 318 (338)
T ss_dssp HHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHT-TSEEEETTEEE
T ss_pred HHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHc-CceecCCCccc
Confidence 344444 4466778999999999999999998888444443 66666666654
No 450
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=20.81 E-value=64 Score=27.96 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHH-----hhcCCceEeeccccEE
Q 022049 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALA-----ADTDGFLEVSDEGDVL 138 (303)
Q Consensus 81 ~~~~~~im~Ave~~g--~rvTvgDVAa~aGLsl~eAe~aL~aLA-----ad~~G~LeVsesGdIl 138 (303)
.+.+.+|.+++.+.. .-+|-+|||...|.+- -++.-=.+++ -...||==|..+|.+-
T Consensus 95 t~Fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~-a~RaVg~A~~~np~~~~iPcHRVv~~~G~l~ 158 (180)
T 1sfe_A 95 TAFQQQVWQALRTIPCGETVSYQQLANAIGKPK-AVRAVASACAANKLAIVIPCHRVVRGDGSLS 158 (180)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHTTCTT-CHHHHHHHHHTCCBBTTBCGGGEECTTSCCT
T ss_pred ChHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCc-hHHHHHHHHHhCCCCcccCcceEECCCCCcC
Confidence 567899999999985 4577789999999742 2333333333 3568999999999985
No 451
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=20.73 E-value=1e+02 Score=29.27 Aligned_cols=53 Identities=21% Similarity=0.161 Sum_probs=40.6
Q ss_pred cccccCCCCc-hhhHHHHHHHHhcCCceeehhhhh--------hcCCCHHHHHHHHHHHHhhc
Q 022049 72 RIVESDKLPA-DVRNRAMDAVDACNRRVTIGDVAG--------KAGLKLNEAQKALQALAADT 125 (303)
Q Consensus 72 ~~~~~~~l~~-~~~~~im~Ave~~g~rvTvgDVAa--------~aGLsl~eAe~aL~aLAad~ 125 (303)
+...-++|+. -+.++.++.+++.|+ .|+.||+. .+||+..+|++.+.+...-.
T Consensus 79 ~~~~~~~l~~~gi~~~~~~~L~~ag~-~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~ 140 (400)
T 3lda_A 79 SFVPIEKLQVNGITMADVKKLRESGL-HTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLV 140 (400)
T ss_dssp CSCBGGGGCCTTCCHHHHHHHHHTTC-CBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHS
T ss_pred CccCHHHHHhCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4456677774 578999999999998 56666654 57999999999888866533
No 452
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=20.63 E-value=67 Score=28.47 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe-ecccc
Q 022049 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV-SDEGD 136 (303)
Q Consensus 81 ~~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeV-sesGd 136 (303)
...|-+|+..+.+ +..|++|+|...|++...+.+-|..|... |-++. ..+|.
T Consensus 11 ~~~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~a--GLV~~~~~~gr 63 (232)
T 2qlz_A 11 NKVRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMERE--GVLQSYEKEER 63 (232)
T ss_dssp SHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHHT--TSEEEEEECC-
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeeecCC
Confidence 4567789999974 46999999999999999999999999765 55665 44553
No 453
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.53 E-value=1e+02 Score=22.32 Aligned_cols=53 Identities=6% Similarity=-0.153 Sum_probs=34.0
Q ss_pred CCCCchhhHHHHHHH-HhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCce
Q 022049 77 DKLPADVRNRAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFL 129 (303)
Q Consensus 77 ~~l~~~~~~~im~Av-e~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~L 129 (303)
+.||..-|.-+.-.. -..+...|..|||...|+|...+++-+......-.-.+
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 457665554432211 11226799999999999999999877665554444433
No 454
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.50 E-value=91 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHH
Q 022049 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe 115 (303)
+++-+..++.| .|..|+|...|++.....
T Consensus 4 ~~l~~~r~~~g--lsq~~lA~~~gis~~~i~ 32 (69)
T 1r69_A 4 SRVKSKRIQLG--LNQAELAQKVGTTQQSIE 32 (69)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCcCHHHHH
Confidence 45555556655 689999999999976653
No 455
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.49 E-value=74 Score=27.94 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=14.8
Q ss_pred CCCCchhhHHHHHHHHhcCCceeehhhhhhc-----------CCC---HHHHHHHHHHHHhhcCCceEee
Q 022049 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKA-----------GLK---LNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 77 ~~l~~~~~~~im~Ave~~g~rvTvgDVAa~a-----------GLs---l~eAe~aL~aLAad~~G~LeVs 132 (303)
.++..+.|++|+++++++||+....--+.++ .++ ..+.-+++...|.+.|-+|.+.
T Consensus 33 ~~Vs~~tr~rV~~aa~~lgY~pn~~ar~l~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 102 (348)
T 3bil_A 33 PAVAASTRERIQQLASDLGYRANAQARALRSSRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIIT 102 (348)
T ss_dssp -----------------------------------CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3678899999999999999975432111011 111 2355667777777777776554
No 456
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.46 E-value=82 Score=21.12 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHH
Q 022049 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 82 ~~~~~im~Ave~~g~rvTvgDVAa~aGLsl~eA 114 (303)
...+++-++.++.| .|..|+|...|++....
T Consensus 5 ~~~~~l~~~r~~~g--ls~~~lA~~~gis~~~i 35 (76)
T 1adr_A 5 LMGERIRARRKKLK--IRQAALGKMVGVSNVAI 35 (76)
T ss_dssp CHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 35566767777765 69999999999987665
No 457
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=20.43 E-value=45 Score=27.53 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCc-eeehhhhhhcCCCHHHH
Q 022049 86 RAMDAVDACNRR-VTIGDVAGKAGLKLNEA 114 (303)
Q Consensus 86 ~im~Ave~~g~r-vTvgDVAa~aGLsl~eA 114 (303)
.+++.+.+.|+. +|+.+||.++|++....
T Consensus 10 aA~~l~~~~G~~~~s~~~IA~~aGvs~~tl 39 (209)
T 3bqy_A 10 TALDLLNESGLDTLTMRRLAQAMDVQAGAL 39 (209)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHHhCCCcchH
Confidence 334555667875 99999999999997643
No 458
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.38 E-value=1.2e+02 Score=24.78 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCchhhHHHHHHHHhcC--------CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 022049 79 LPADVRNRAMDAVDACN--------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (303)
Q Consensus 79 l~~~~~~~im~Ave~~g--------~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVs 132 (303)
.-.+..+|+...+..+. .++|..|+|+..|++...+-+.|..|..+ |-+++.
T Consensus 160 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~--glI~~~ 219 (232)
T 1zyb_A 160 PTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN--GLIELH 219 (232)
T ss_dssp CCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT--TSCEEE
T ss_pred hhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC--CCEEec
Confidence 34567788888887642 35788999999999999999999999765 445544
No 459
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=20.36 E-value=1.3e+02 Score=30.01 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeeccccEEEEcChhhHHHHhh
Q 022049 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGDVLYVFPNNYRAKLAA 151 (303)
Q Consensus 85 ~~im~Ave~~g~rvTvgDVAa~aGLsl~eAe~aL~aLAad~---~G~LeVsesGdIlYvFP~~fRs~l~~ 151 (303)
..|++.+.+.+ .+|..++|...|++..++++.|..|.... .|-|+-. |. .|.....++..+.+
T Consensus 433 ~~iL~~l~~~~-~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--g~-~y~L~~~~~~~~~~ 498 (583)
T 3lmm_A 433 AIVLYLLFQRP-FITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--DG-VWLLGNACREILRK 498 (583)
T ss_dssp HHHHHHHHHSS-SBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--TT-EEEECHHHHHHHTS
T ss_pred HHHHHHHHHCC-CcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--CC-EEEECHHHHHHhcc
Confidence 45788887766 59999999999999999999999998843 4555543 43 58888888876643
No 460
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.31 E-value=50 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.6
Q ss_pred hHHHHHHHHhcCCceeehh
Q 022049 84 RNRAMDAVDACNRRVTIGD 102 (303)
Q Consensus 84 ~~~im~Ave~~g~rvTvgD 102 (303)
.+.+++++++.||.+++.|
T Consensus 54 ~~~i~~~i~~~G~~~~~~~ 72 (72)
T 1aw0_A 54 PETLRGAIEDMGFDATLSD 72 (72)
T ss_dssp HHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHCCCCcEeCC
Confidence 3678999999999987754
No 461
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=20.25 E-value=59 Score=28.70 Aligned_cols=49 Identities=29% Similarity=0.226 Sum_probs=37.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeeccccEEEEcChhhHHHH
Q 022049 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKL 149 (303)
Q Consensus 96 ~rvTvgDVAa~aGLsl~eAe~aL~aLAad~~G~LeVsesGdIlYvFP~~fRs~l 149 (303)
...|+.|+|.++|++..-.++=|+.|++ .|-|+-.+ + .|.-+.--+.-|
T Consensus 55 ~~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~~--~-~y~~t~~s~~~l 103 (352)
T 3mcz_A 55 TGRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKEG--D-AFRNTALTERYL 103 (352)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--T-EEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEecC--C-eeecCHHHHhhc
Confidence 3899999999999999999999999987 46666544 2 376655544433
Done!