BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022050
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K P ISL KGV+ + I
Sbjct: 76 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKAN---PTGISLIKGVDEGPNGLKLI 132
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P+ ++ G NIASE+ ++++ I C + L + ++ P+F
Sbjct: 133 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 186
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+ ++ T E+ G LKNV A+GAG
Sbjct: 187 RITVVQEVDTVEICGALKNVVAVGAG 212
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K T ISL KGV+ + I
Sbjct: 81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P+ ++ G NIASE+ ++++ I C + L + ++ P+F
Sbjct: 138 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+ ++ T E+ G LKNV A+GAG
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAG 217
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 18/150 (12%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
++NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPL--AKFLRRP 267
I + +I G+ +I L G NIA+E+ +++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGI---DISVLMGANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAG 214
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K T ISL KGV+ + I
Sbjct: 81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P L G NIASE+ ++++ I C + L + + P+F
Sbjct: 138 ---SEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQLLKELXQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+ ++ T E+ G LKNV A+GAG
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAG 217
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 57/272 (20%)
Query: 38 KAEGDPLRIVGVGAGAWGSVFTAML-QDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFE 95
KA P ++ +G+G WG+ ++ ++ GY ++++W + E L E
Sbjct: 29 KAAEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFE----EEINGEKLTE 84
Query: 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
+IN+R ++ YL + L D N++ P +L
Sbjct: 85 IINTRHQNVK-------YLPGI-------------TLPD----NLVANP--------DLI 112
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
++V D DI++ +P + ++ + + IS KG E + V + +
Sbjct: 113 DSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRA---ISCLKGFEVGAKGVQLL---SS 166
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARIC----------GAEKWRKPLAKFLR 265
I G+ L G NIA+E+ + ++ + G + K L
Sbjct: 167 YITEELGI---QCGALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFH 223
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTI 297
RP+F V D+ + G LKNV A+G G +
Sbjct: 224 RPYFHVSVIEDVAGISICGALKNVVALGCGFV 255
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGVEAELEAV 207
+++++A A+I++ +P+ + FE+ + Y KE+ VPV++ KG+E
Sbjct: 77 SDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK-QVPVLVC-TKGIERS---- 130
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY-----ANARICGAEKWRKPLAK 262
+ P ++I P+ ++L GP+ A E+ + A+A I A + ++ ++
Sbjct: 131 -TLKFPAEIIGEFLPSPLLSVL--AGPSFAIEVATGVFTCVSIASADINVARRLQRIMST 187
Query: 263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
R F W D V EV +KNV AIG+G
Sbjct: 188 GDR--SFVCWATTDTVGCEVASAVKNVLAIGSG 218
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 109/276 (39%), Gaps = 75/276 (27%)
Query: 38 KAEGDPLRIVGVGAGAWGSVFTAML----QDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93
K + PL+I +G+G W S + ++ +++Y + + +R+W R + E +
Sbjct: 16 KLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENE---VRMWIRD----EFVNGERM 68
Query: 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVV-- 151
++IN++ + + YLK V PL P +V
Sbjct: 69 VDIINNKHENTK-------YLKGV--------------------------PL-PHNIVAH 94
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPV-IISLAKGVEAELEAVPRI 210
++L + DAD++I +P + V I +I ISL KG I
Sbjct: 95 SDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF---------I 145
Query: 211 ITPTQM------INRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKP 259
+ QM I+ +P L G NIA ++ + ++ A I G +K W++
Sbjct: 146 VKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIWQR- 201
Query: 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
P+F + + + E+ G LKN+ + G
Sbjct: 202 ---VFDLPYFKINCVNETIEVEICGALKNIITLACG 234
>pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|B Chain B, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|C Chain C, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
Length = 484
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVIN 166
+I C L+ +A +GD L A L+D L+ + P P+ + +Q A++DA ++
Sbjct: 302 MIGHCGGLRESQA-IGDYVL-AHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKAVS 359
Query: 167 GLPSTETKE------VFEEISRYWKERITVPVI-ISLAKGVEAELEAV 207
G+P E K+ V R W+ R + + +L++ V ++E+
Sbjct: 360 GMPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESA 407
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRII 211
TN E + DI++ +P +E + + +++L+KG+E ++ R+
Sbjct: 72 TNDLEEIKKEDILVIAIPVQYIREHLLRLP------VKPSXVLNLSKGIE--IKTGKRV- 122
Query: 212 TPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV 271
++++ G P L GP+ A E+ K + G K L K + +F V
Sbjct: 123 --SEIVEEILGCPY---AVLSGPSHAEEVAKKLPTAVTLAGENS--KELQKRISTEYFRV 175
Query: 272 WDNGDLVTHEVMGGLKNVYAIGAGTI 297
+ D+V E+ G LKNV AI AG +
Sbjct: 176 YTCEDVVGVEIAGALKNVIAIAAGIL 201
>pdb|1T8R|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8S|A Chain A, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|B Chain B, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|C Chain C, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|D Chain D, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|E Chain E, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|F Chain F, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8W|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8Y|A Chain A, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|B Chain B, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|C Chain C, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|D Chain D, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|E Chain E, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|F Chain F, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
Length = 484
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 108 IRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVING 167
I C L+ +A +GD L A L+D L+ + P P+ + +Q A++DA +++G
Sbjct: 303 IGHCGGLRESQA-IGDYVL-AHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKLVSG 360
Query: 168 LPSTETKE------VFEEISRYWKERITVPVI-ISLAKGVEAELEAV 207
P E K+ V R W+ R + + +L++ V + E+
Sbjct: 361 RPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDXESA 407
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 231 LGGPNIASEIY-NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNV 289
+ GP++A+E+ N A + ++ K L + L F V+ N D++ E+ G +KN+
Sbjct: 159 ISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNI 218
Query: 290 YAIGAG 295
AI G
Sbjct: 219 LAIATG 224
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212
L++ + +A++V+ G+ + V I Y K++ I+ ++KG+ ++ ++T
Sbjct: 64 QLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQ----YIVLISKGL---IDFDNSVLT 116
Query: 213 PTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTV 271
+ + R E + + GP IA E+ + +E + + +F V
Sbjct: 117 VPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGV 176
Query: 272 WDNGDLVTHEVMGGLKNVYAI 292
D++ E+ LKNVY+I
Sbjct: 177 EVTTDIIGTEITSALKNVYSI 197
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 156 EAVWDADIVINGLPSTETK----EVFEEISRYWKERITVPVIISLAKGV 200
E + DA++ I+GLP T T+ ++F R R+ V L++GV
Sbjct: 84 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 132
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 156 EAVWDADIVINGLPSTETK----EVFEEISRYWKERITVPVIISLAKGV 200
E + DA++ I+GLP T T+ ++F R R+ V L++GV
Sbjct: 84 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 132
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 157 AVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVIISLAKGV 200
++ DA++ ++GLP T E +++F + R RI V + +++GV
Sbjct: 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
++ DA++ ++GLP T +++ E++ + IT +++ A GV
Sbjct: 87 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGV 130
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 149 KVVTNLQEAVWDADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKG-VEAE-- 203
KV++ A + + V+N + S ++E EE+ + ER+T PV +LA+ + AE
Sbjct: 276 KVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEV 335
Query: 204 -----LEAVPRIITPTQMINRATGVPIENIL 229
+ RI T Q I+ A G P+ L
Sbjct: 336 DFVEIIGGTTRIPTLKQSISEAFGKPLSTTL 366
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 149 KVVTNLQEAVWDADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKG-VEAE-- 203
KV++ A + + V+N + S ++E EE+ + ER+T PV +LA+ + AE
Sbjct: 278 KVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEV 337
Query: 204 -----LEAVPRIITPTQMINRATGVPIENIL 229
+ RI T Q I+ A G P+ L
Sbjct: 338 DFVEIIGGTTRIPTLKQSISEAFGKPLSTTL 368
>pdb|1T8P|A Chain A, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|1T8P|B Chain B, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|2A9J|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2A9J|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2F90|A Chain A, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2F90|B Chain B, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2H4X|A Chain A, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4X|B Chain B, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4Z|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H4Z|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H52|A Chain A, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|2H52|B Chain B, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|3NFY|A Chain A, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
pdb|3NFY|B Chain B, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
Length = 267
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 161 ADIVINGLPSTET-KEVFEEISRYWKERITVPVI 193
D+ ++ LP +E+ K+V E + YW ERI V+
Sbjct: 145 CDVPLDQLPRSESLKDVLERLLPYWNERIAPEVL 178
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
DA++ ++GLP T +++ E++ + IT +++ A GV
Sbjct: 1 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGV 41
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 149 KVVTNLQEAVWDADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKG-VEAE-- 203
KV++ A + + V+N + S ++E EE+ + ER+T PV +LA+ + AE
Sbjct: 275 KVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEV 334
Query: 204 -----LEAVPRIITPTQMINRATGVPIENIL 229
+ RI T Q I+ A G P+ L
Sbjct: 335 DFVEIIGGTTRIPTLKQSISEAFGKPLSTTL 365
>pdb|2HHJ|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
pdb|2HHJ|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
Length = 267
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 161 ADIVINGLPSTET-KEVFEEISRYWKERITVPVI 193
D+ ++ LP +E+ K+V E + YW ERI V+
Sbjct: 145 CDVPLDQLPRSESLKDVLERLLPYWNERIAPEVL 178
>pdb|4DBL|E Chain E, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|J Chain J, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4FI3|F Chain F, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 255
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRA 220
IVI G P + +I +YW E++ +PVI + E A PRII Q + A
Sbjct: 192 IVITGGP-----DQIPKIKQYWGEQLKIPVIPLTSDWFE---RASPRIILAAQQLCNA 241
>pdb|1Z25|A Chain A, Structure Of P.Furiosus Argonaute With Bound Mn2+
pdb|1Z26|A Chain A, Structure Of Pyrococcus Furiosus Argonaute With Bound
Tungstate
Length = 771
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 59 TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118
+A++ DS GY+R V I+I + G SVD E E+++ ++ +L + L
Sbjct: 573 SAVMFDSQGYIRKIVPIKIGEQRGESVD--MNEFFKEMVDKFKEFNIKLDNKKILL---- 626
Query: 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTN 153
R G T + +E LK + M D + + V+ N
Sbjct: 627 LRDGRITNNEEEGLK--YISEMFDIEVVTMDVIKN 659
>pdb|1N2Z|A Chain A, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
pdb|1N2Z|B Chain B, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
Length = 245
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRA 220
IVI G P K I +YW E++ +PVI + E A PRII Q + A
Sbjct: 191 IVITGGPDQIPK-----IKQYWGEQLKIPVIPLTSDWFE---RASPRIILAAQQLCNA 240
>pdb|1N4A|A Chain A, The Ligand Bound Structure Of E.coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4A|B Chain B, The Ligand Bound Structure Of E.coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4D|A Chain A, The Ligand-Free Structure Of E Coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4D|B Chain B, The Ligand-Free Structure Of E Coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
Length = 252
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRA 220
IVI G P K I +YW E++ +PVI + E A PRII Q + A
Sbjct: 190 IVITGGPDQIPK-----IKQYWGEQLKIPVIPLTSDWFE---RASPRIILAAQQLCNA 239
>pdb|2QI9|F Chain F, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 245
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRA 220
IVI G P K I +YW E++ +PVI + E A PRII Q + A
Sbjct: 191 IVITGGPDQIPK-----IKQYWGEQLKIPVIPLTSDWFE---RASPRIILAAQQLCNA 240
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 149 KVVTNLQEAVWDADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKG-VEAE-- 203
KV++ A + + V N + S ++E EE+ + ER+T PV +LA+ + AE
Sbjct: 276 KVLSANTNAPFSVESVXNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEV 335
Query: 204 -----LEAVPRIITPTQMINRATGVPIENIL 229
+ RI T Q I+ A G P+ L
Sbjct: 336 DFVEIIGGTTRIPTLKQSISEAFGKPLSTTL 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,998,159
Number of Sequences: 62578
Number of extensions: 359863
Number of successful extensions: 901
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 34
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)