Query 022050
Match_columns 303
No_of_seqs 229 out of 1692
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 8.2E-43 1.8E-47 325.4 22.1 204 43-303 1-205 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 3.5E-41 7.5E-46 322.5 23.0 223 33-303 1-230 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 4.5E-38 9.6E-43 299.1 23.5 213 45-303 1-221 (342)
4 KOG2711 Glycerol-3-phosphate d 100.0 2.2E-37 4.8E-42 286.5 20.2 238 25-303 3-243 (372)
5 PRK12439 NAD(P)H-dependent gly 100.0 3.8E-34 8.2E-39 272.6 24.3 205 42-303 6-211 (341)
6 PRK14620 NAD(P)H-dependent gly 100.0 6E-30 1.3E-34 241.8 22.9 203 44-303 1-206 (326)
7 PRK14618 NAD(P)H-dependent gly 100.0 9.1E-27 2E-31 220.4 22.8 200 43-302 4-204 (328)
8 PRK14619 NAD(P)H-dependent gly 99.9 7.6E-26 1.6E-30 212.6 22.5 176 43-302 4-181 (308)
9 PRK00094 gpsA NAD(P)H-dependen 99.9 1.5E-25 3.1E-30 210.6 23.6 204 43-302 1-205 (325)
10 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 7.9E-26 1.7E-30 192.9 14.8 154 45-255 1-155 (157)
11 PRK06522 2-dehydropantoate 2-r 99.8 2.6E-19 5.6E-24 166.6 13.6 193 44-301 1-199 (304)
12 PRK12491 pyrroline-5-carboxyla 99.8 2.6E-17 5.6E-22 152.5 16.8 162 44-278 3-165 (272)
13 PRK12921 2-dehydropantoate 2-r 99.7 2.3E-17 5E-22 153.8 13.6 188 44-297 1-198 (305)
14 COG0345 ProC Pyrroline-5-carbo 99.7 4.7E-17 1E-21 149.6 15.1 162 43-279 1-163 (266)
15 PRK08229 2-dehydropantoate 2-r 99.7 6.4E-17 1.4E-21 153.5 15.2 185 43-291 2-192 (341)
16 COG1893 ApbA Ketopantoate redu 99.7 5.4E-17 1.2E-21 152.7 12.7 185 44-292 1-192 (307)
17 PRK06928 pyrroline-5-carboxyla 99.7 5.3E-16 1.2E-20 143.9 17.0 162 43-277 1-164 (277)
18 PRK05708 2-dehydropantoate 2-r 99.7 8E-17 1.7E-21 151.4 11.3 181 43-290 2-190 (305)
19 PRK06249 2-dehydropantoate 2-r 99.7 3E-16 6.5E-21 147.8 14.2 187 42-292 4-202 (313)
20 PRK07634 pyrroline-5-carboxyla 99.7 1.2E-15 2.6E-20 138.2 17.1 161 43-277 4-166 (245)
21 PRK07679 pyrroline-5-carboxyla 99.7 4.8E-15 1E-19 137.5 19.2 163 43-279 3-168 (279)
22 PTZ00431 pyrroline carboxylate 99.7 3.4E-15 7.3E-20 137.3 16.3 153 44-277 4-157 (260)
23 PRK07680 late competence prote 99.6 7E-15 1.5E-19 135.9 17.2 161 44-279 1-163 (273)
24 PLN02688 pyrroline-5-carboxyla 99.6 2E-14 4.4E-19 131.9 18.4 157 44-275 1-159 (266)
25 TIGR03026 NDP-sugDHase nucleot 99.6 1.2E-14 2.6E-19 141.9 17.0 197 44-290 1-214 (411)
26 PRK11880 pyrroline-5-carboxyla 99.6 3.6E-14 7.8E-19 130.3 18.3 155 43-274 2-158 (267)
27 TIGR01915 npdG NADPH-dependent 99.6 1.4E-13 3.1E-18 123.4 20.4 176 44-275 1-188 (219)
28 PF02737 3HCDH_N: 3-hydroxyacy 99.6 3E-15 6.4E-20 130.7 7.2 174 45-276 1-179 (180)
29 TIGR00745 apbA_panE 2-dehydrop 99.6 1.2E-14 2.7E-19 134.3 11.3 183 53-298 1-190 (293)
30 PRK06035 3-hydroxyacyl-CoA deh 99.6 4.5E-14 9.8E-19 131.6 15.0 202 43-298 3-208 (291)
31 PRK06130 3-hydroxybutyryl-CoA 99.6 2.6E-13 5.6E-18 127.5 18.5 193 43-296 4-201 (311)
32 PF03807 F420_oxidored: NADP o 99.5 5.1E-14 1.1E-18 109.6 10.4 94 45-199 1-96 (96)
33 COG1004 Ugd Predicted UDP-gluc 99.5 2.4E-13 5.3E-18 129.8 16.2 194 44-290 1-212 (414)
34 PRK05808 3-hydroxybutyryl-CoA 99.5 3.8E-13 8.3E-18 124.8 17.2 196 43-296 3-203 (282)
35 PRK07066 3-hydroxybutyryl-CoA 99.5 1.9E-13 4.1E-18 129.4 14.8 153 42-239 6-163 (321)
36 PRK08293 3-hydroxybutyryl-CoA 99.5 1.2E-12 2.5E-17 122.0 19.4 200 43-297 3-207 (287)
37 COG1250 FadB 3-hydroxyacyl-CoA 99.5 1.2E-13 2.6E-18 129.4 11.7 157 43-241 3-164 (307)
38 PRK07531 bifunctional 3-hydrox 99.5 2.1E-12 4.5E-17 129.1 17.8 185 43-287 4-193 (495)
39 TIGR00465 ilvC ketol-acid redu 99.5 8.4E-13 1.8E-17 124.7 13.3 163 44-286 4-189 (314)
40 PRK07530 3-hydroxybutyryl-CoA 99.5 5.3E-12 1.2E-16 117.7 18.6 186 43-286 4-194 (292)
41 PRK11730 fadB multifunctional 99.4 6.5E-13 1.4E-17 138.0 13.3 156 43-240 313-473 (715)
42 PLN02545 3-hydroxybutyryl-CoA 99.4 3.7E-12 8E-17 118.9 16.6 194 43-293 4-201 (295)
43 TIGR02440 FadJ fatty oxidation 99.4 1.2E-12 2.5E-17 135.8 13.5 158 42-241 303-466 (699)
44 PRK09260 3-hydroxybutyryl-CoA 99.4 7.2E-12 1.6E-16 116.7 16.4 187 44-287 2-193 (288)
45 TIGR00872 gnd_rel 6-phosphoglu 99.4 9.3E-12 2E-16 116.7 17.0 180 44-301 1-190 (298)
46 TIGR02437 FadB fatty oxidation 99.4 2.2E-12 4.7E-17 134.0 13.8 158 42-241 312-474 (714)
47 PRK07819 3-hydroxybutyryl-CoA 99.4 8.7E-12 1.9E-16 116.4 16.5 121 42-203 4-127 (286)
48 PF03446 NAD_binding_2: NAD bi 99.4 1.8E-12 3.9E-17 111.1 10.1 153 43-272 1-158 (163)
49 PRK06476 pyrroline-5-carboxyla 99.4 4E-12 8.7E-17 116.5 13.0 173 44-298 1-177 (258)
50 PRK11154 fadJ multifunctional 99.4 3E-12 6.5E-17 133.0 13.6 157 43-241 309-471 (708)
51 TIGR02441 fa_ox_alpha_mit fatt 99.4 3.4E-12 7.3E-17 133.0 13.2 158 42-241 334-496 (737)
52 PRK12490 6-phosphogluconate de 99.4 2.2E-11 4.7E-16 114.2 16.5 180 44-301 1-191 (299)
53 PRK09599 6-phosphogluconate de 99.4 2.1E-11 4.5E-16 114.4 16.3 180 44-301 1-192 (301)
54 PF02558 ApbA: Ketopantoate re 99.4 3.4E-12 7.4E-17 107.1 9.5 116 46-223 1-116 (151)
55 PRK15057 UDP-glucose 6-dehydro 99.4 2.8E-11 6.1E-16 117.5 17.2 185 44-290 1-203 (388)
56 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 1.4E-11 3E-16 108.1 13.5 169 44-263 1-185 (185)
57 PRK06129 3-hydroxyacyl-CoA deh 99.3 8.2E-11 1.8E-15 110.7 19.4 182 43-280 2-188 (308)
58 PRK05479 ketol-acid reductoiso 99.3 3.7E-11 8.1E-16 113.9 17.0 175 43-296 17-213 (330)
59 PLN02353 probable UDP-glucose 99.3 2.8E-11 6E-16 120.2 16.6 197 43-290 1-222 (473)
60 PRK07417 arogenate dehydrogena 99.3 3.2E-11 6.8E-16 112.0 15.3 175 44-294 1-185 (279)
61 PRK11064 wecC UDP-N-acetyl-D-m 99.3 3.5E-11 7.5E-16 117.9 16.3 194 43-290 3-218 (415)
62 PRK15461 NADH-dependent gamma- 99.3 2.5E-11 5.3E-16 113.7 14.3 181 43-300 1-189 (296)
63 COG2085 Predicted dinucleotide 99.3 3.3E-11 7.2E-16 106.7 13.9 165 43-273 1-177 (211)
64 PRK11559 garR tartronate semia 99.3 5.1E-11 1.1E-15 111.1 15.9 171 43-290 2-178 (296)
65 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 5.8E-11 1.2E-15 118.9 17.0 121 42-203 4-126 (503)
66 PRK08507 prephenate dehydrogen 99.3 8.4E-11 1.8E-15 108.8 15.6 182 44-298 1-191 (275)
67 PRK08655 prephenate dehydrogen 99.3 1.7E-10 3.6E-15 113.8 17.8 157 44-276 1-163 (437)
68 TIGR01505 tartro_sem_red 2-hyd 99.3 7E-11 1.5E-15 110.0 14.0 171 45-292 1-177 (291)
69 TIGR01692 HIBADH 3-hydroxyisob 99.3 5.6E-11 1.2E-15 110.7 13.3 177 48-301 1-185 (288)
70 PTZ00142 6-phosphogluconate de 99.3 1.2E-10 2.5E-15 115.7 15.7 187 43-301 1-201 (470)
71 PRK08268 3-hydroxy-acyl-CoA de 99.3 2.5E-10 5.3E-15 114.5 17.5 121 42-203 6-128 (507)
72 COG0677 WecC UDP-N-acetyl-D-ma 99.3 1.8E-10 3.8E-15 110.1 15.5 198 40-290 6-221 (436)
73 PLN02256 arogenate dehydrogena 99.2 2E-10 4.4E-15 108.1 15.5 171 23-275 21-203 (304)
74 PRK15182 Vi polysaccharide bio 99.2 3.4E-10 7.4E-15 111.2 16.1 194 42-291 5-215 (425)
75 PRK07502 cyclohexadienyl dehyd 99.2 8.5E-10 1.8E-14 103.6 17.6 165 40-274 3-177 (307)
76 PRK12557 H(2)-dependent methyl 99.2 7.5E-10 1.6E-14 105.9 16.9 178 44-290 1-207 (342)
77 KOG2304 3-hydroxyacyl-CoA dehy 99.2 3.6E-12 7.7E-17 113.4 -0.3 160 42-242 10-179 (298)
78 TIGR00112 proC pyrroline-5-car 99.2 4.1E-10 9E-15 102.8 13.0 114 148-278 31-145 (245)
79 PRK06545 prephenate dehydrogen 99.2 1E-09 2.3E-14 105.5 16.0 161 44-274 1-172 (359)
80 PLN02350 phosphogluconate dehy 99.1 1.3E-09 2.7E-14 108.8 14.9 191 39-300 2-206 (493)
81 COG2084 MmsB 3-hydroxyisobutyr 99.1 1.9E-09 4.2E-14 100.3 14.8 173 44-292 1-179 (286)
82 PRK15059 tartronate semialdehy 99.1 2.4E-09 5.2E-14 100.3 13.8 179 44-300 1-187 (292)
83 TIGR00873 gnd 6-phosphoglucona 99.1 2.1E-09 4.7E-14 106.7 14.0 184 45-301 1-198 (467)
84 PRK14806 bifunctional cyclohex 99.0 5.2E-09 1.1E-13 109.2 16.6 158 43-274 3-175 (735)
85 KOG3124 Pyrroline-5-carboxylat 99.0 1.4E-09 3E-14 98.6 9.6 162 44-278 1-163 (267)
86 PLN02858 fructose-bisphosphate 99.0 9.9E-09 2.1E-13 113.3 16.9 189 37-300 318-515 (1378)
87 COG0287 TyrA Prephenate dehydr 99.0 1.2E-08 2.6E-13 95.0 14.6 181 42-295 2-193 (279)
88 PRK11199 tyrA bifunctional cho 99.0 1.1E-08 2.4E-13 99.0 14.3 139 42-275 97-241 (374)
89 PRK08269 3-hydroxybutyryl-CoA 99.0 1.1E-08 2.4E-13 96.8 13.3 186 54-291 1-195 (314)
90 PLN02712 arogenate dehydrogena 98.9 3E-08 6.6E-13 102.5 15.0 156 42-274 368-535 (667)
91 KOG2666 UDP-glucose/GDP-mannos 98.8 2.5E-08 5.4E-13 92.9 11.0 195 43-290 1-222 (481)
92 PF10727 Rossmann-like: Rossma 98.8 5.1E-09 1.1E-13 86.5 5.4 97 41-200 8-107 (127)
93 PLN02712 arogenate dehydrogena 98.8 1E-07 2.2E-12 98.6 15.7 157 42-275 51-219 (667)
94 PRK08818 prephenate dehydrogen 98.8 2.7E-07 5.9E-12 89.1 16.9 154 43-286 4-165 (370)
95 PLN02858 fructose-bisphosphate 98.7 2.6E-07 5.6E-12 102.2 16.3 184 43-301 4-196 (1378)
96 PRK06223 malate dehydrogenase; 98.6 3.9E-07 8.5E-12 85.6 12.8 105 43-201 2-123 (307)
97 PRK12480 D-lactate dehydrogena 98.6 1.9E-07 4.1E-12 89.0 9.7 93 43-203 146-240 (330)
98 KOG0409 Predicted dehydrogenas 98.6 1.1E-06 2.4E-11 81.7 13.6 182 43-300 35-224 (327)
99 TIGR01763 MalateDH_bact malate 98.5 1.2E-06 2.6E-11 82.6 13.1 105 44-202 2-123 (305)
100 PF07991 IlvN: Acetohydroxy ac 98.5 1.2E-06 2.6E-11 74.9 9.7 94 43-202 4-99 (165)
101 PRK02318 mannitol-1-phosphate 98.5 2E-07 4.3E-12 90.5 5.5 117 44-203 1-128 (381)
102 PTZ00082 L-lactate dehydrogena 98.5 2E-06 4.4E-11 81.7 12.2 105 44-201 7-132 (321)
103 cd05297 GH4_alpha_glucosidase_ 98.4 9.5E-07 2E-11 86.9 9.9 78 44-170 1-84 (423)
104 PF00056 Ldh_1_N: lactate/mala 98.4 3.5E-06 7.5E-11 70.7 11.7 119 44-225 1-136 (141)
105 PRK13403 ketol-acid reductoiso 98.4 5.5E-06 1.2E-10 78.4 14.1 95 43-203 16-111 (335)
106 PTZ00117 malate dehydrogenase; 98.4 4E-06 8.7E-11 79.5 12.5 107 42-201 4-126 (319)
107 PRK08605 D-lactate dehydrogena 98.4 1.2E-06 2.6E-11 83.5 8.8 95 43-203 146-242 (332)
108 TIGR01724 hmd_rel H2-forming N 98.3 5.4E-06 1.2E-10 78.2 11.5 99 44-202 1-120 (341)
109 cd01339 LDH-like_MDH L-lactate 98.3 5.4E-06 1.2E-10 77.8 10.8 102 46-201 1-119 (300)
110 cd00650 LDH_MDH_like NAD-depen 98.2 1.6E-05 3.5E-10 73.2 12.7 107 46-202 1-124 (263)
111 PRK09287 6-phosphogluconate de 98.2 1.9E-05 4E-10 78.5 13.2 175 54-301 1-190 (459)
112 PRK15076 alpha-galactosidase; 98.2 1.3E-05 2.9E-10 79.0 11.5 81 43-168 1-83 (431)
113 PLN02602 lactate dehydrogenase 98.2 3.1E-05 6.7E-10 74.5 12.8 61 21-86 11-76 (350)
114 PRK13304 L-aspartate dehydroge 98.1 1.5E-05 3.3E-10 73.7 10.2 82 43-182 1-83 (265)
115 PF01113 DapB_N: Dihydrodipico 98.1 4.6E-05 1E-09 62.4 11.8 122 44-236 1-124 (124)
116 cd05291 HicDH_like L-2-hydroxy 98.1 4.2E-05 9.1E-10 72.0 12.6 40 44-87 1-40 (306)
117 KOG2305 3-hydroxyacyl-CoA dehy 98.1 5.4E-06 1.2E-10 74.4 5.6 122 43-203 3-126 (313)
118 PRK13302 putative L-aspartate 98.0 3.5E-05 7.5E-10 71.6 10.5 81 43-181 6-88 (271)
119 PF02153 PDH: Prephenate dehyd 98.0 8.1E-05 1.8E-09 68.5 12.6 107 155-275 40-157 (258)
120 PRK07574 formate dehydrogenase 98.0 3.3E-05 7.1E-10 75.1 10.2 97 43-203 192-290 (385)
121 cd05292 LDH_2 A subgroup of L- 98.0 6.5E-05 1.4E-09 70.9 11.2 39 44-86 1-39 (308)
122 PRK00066 ldh L-lactate dehydro 98.0 0.00011 2.3E-09 69.8 12.3 41 42-86 5-45 (315)
123 PF01408 GFO_IDH_MocA: Oxidore 97.9 0.00014 2.9E-09 58.2 11.0 94 44-202 1-97 (120)
124 PRK13243 glyoxylate reductase; 97.9 3.2E-05 6.9E-10 73.8 8.5 96 42-203 149-246 (333)
125 PLN03139 formate dehydrogenase 97.9 5.5E-05 1.2E-09 73.6 10.1 97 43-203 199-297 (386)
126 PRK15469 ghrA bifunctional gly 97.9 5.7E-05 1.2E-09 71.5 9.4 95 43-203 136-232 (312)
127 COG0059 IlvC Ketol-acid reduct 97.9 0.00023 5E-09 66.5 12.9 94 44-203 19-114 (338)
128 cd05293 LDH_1 A subgroup of L- 97.9 0.00015 3.3E-09 68.7 11.9 40 43-86 3-42 (312)
129 PF02826 2-Hacid_dh_C: D-isome 97.9 5.3E-05 1.1E-09 65.8 7.9 97 42-203 35-133 (178)
130 cd01065 NAD_bind_Shikimate_DH 97.9 6.7E-05 1.4E-09 62.8 8.1 40 42-86 18-57 (155)
131 PRK06444 prephenate dehydrogen 97.8 3.3E-05 7.1E-10 68.5 6.0 23 44-67 1-24 (197)
132 COG1023 Gnd Predicted 6-phosph 97.8 8E-05 1.7E-09 67.5 8.3 93 44-200 1-97 (300)
133 COG4007 Predicted dehydrogenas 97.8 0.00046 1E-08 63.2 13.2 93 43-194 1-114 (340)
134 TIGR02853 spore_dpaA dipicolin 97.8 5.8E-05 1.2E-09 70.7 7.6 37 43-85 151-187 (287)
135 PRK05225 ketol-acid reductoiso 97.8 4.5E-05 9.8E-10 75.1 7.0 120 24-203 8-136 (487)
136 cd00300 LDH_like L-lactate deh 97.8 0.00017 3.7E-09 67.8 10.4 38 46-87 1-38 (300)
137 cd05213 NAD_bind_Glutamyl_tRNA 97.8 0.00023 4.9E-09 67.3 11.0 109 29-198 166-274 (311)
138 cd05290 LDH_3 A subgroup of L- 97.7 0.00042 9.1E-09 65.5 12.4 38 45-86 1-38 (307)
139 COG1748 LYS9 Saccharopine dehy 97.7 0.00013 2.8E-09 70.9 8.6 87 43-179 1-87 (389)
140 KOG2380 Prephenate dehydrogena 97.7 0.00053 1.2E-08 65.1 12.2 156 43-272 52-216 (480)
141 PRK06436 glycerate dehydrogena 97.7 0.00013 2.9E-09 68.8 8.3 92 43-203 122-215 (303)
142 PRK05442 malate dehydrogenase; 97.7 0.00037 8.1E-09 66.4 11.4 111 42-201 3-134 (326)
143 TIGR01759 MalateDH-SF1 malate 97.7 0.00045 9.9E-09 65.8 12.0 111 42-201 2-133 (323)
144 PRK00257 erythronate-4-phospha 97.7 0.00011 2.3E-09 71.5 7.8 92 43-203 116-213 (381)
145 TIGR01327 PGDH D-3-phosphoglyc 97.7 0.00012 2.7E-09 74.0 8.5 96 43-203 138-235 (525)
146 PRK06141 ornithine cyclodeamin 97.7 0.00011 2.3E-09 69.7 7.6 95 40-194 122-216 (314)
147 PRK13581 D-3-phosphoglycerate 97.7 0.00015 3.2E-09 73.5 8.7 95 43-203 140-236 (526)
148 COG0039 Mdh Malate/lactate deh 97.7 0.0004 8.6E-09 65.7 11.0 38 44-85 1-38 (313)
149 PF01488 Shikimate_DH: Shikima 97.7 9.8E-05 2.1E-09 61.3 6.1 40 43-87 12-51 (135)
150 PRK15438 erythronate-4-phospha 97.7 0.00014 3E-09 70.7 7.8 93 42-203 115-213 (378)
151 cd01338 MDH_choloroplast_like 97.7 0.00038 8.3E-09 66.2 10.7 40 43-83 2-44 (322)
152 cd05294 LDH-like_MDH_nadp A la 97.6 0.00042 9E-09 65.5 10.8 35 44-82 1-36 (309)
153 TIGR02354 thiF_fam2 thiamine b 97.6 0.00085 1.8E-08 59.6 11.9 40 43-87 21-63 (200)
154 TIGR00036 dapB dihydrodipicoli 97.6 0.00063 1.4E-08 63.0 11.5 76 147-239 55-130 (266)
155 COG0111 SerA Phosphoglycerate 97.6 0.00022 4.7E-09 68.0 8.4 96 43-203 142-239 (324)
156 PRK11790 D-3-phosphoglycerate 97.6 0.00024 5.1E-09 69.8 8.9 93 43-203 151-245 (409)
157 PRK00048 dihydrodipicolinate r 97.6 0.00042 9.2E-09 63.7 10.0 95 43-203 1-97 (257)
158 PF01118 Semialdhyde_dh: Semia 97.6 0.00071 1.5E-08 54.9 9.9 97 45-200 1-100 (121)
159 TIGR01757 Malate-DH_plant mala 97.6 0.00066 1.4E-08 66.1 11.1 111 42-201 43-174 (387)
160 PF02056 Glyco_hydro_4: Family 97.6 0.00094 2E-08 58.5 11.0 82 45-171 1-84 (183)
161 PRK08306 dipicolinate synthase 97.5 0.00042 9E-09 65.2 9.1 37 43-85 152-188 (296)
162 cd05197 GH4_glycoside_hydrolas 97.5 0.00065 1.4E-08 67.1 10.7 110 44-202 1-148 (425)
163 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00073 1.6E-08 64.0 10.7 34 44-81 1-35 (310)
164 PRK08410 2-hydroxyacid dehydro 97.5 0.00038 8.3E-09 65.8 8.8 93 42-203 144-238 (311)
165 cd00704 MDH Malate dehydrogena 97.5 0.00078 1.7E-08 64.1 10.7 38 44-82 1-41 (323)
166 TIGR02371 ala_DH_arch alanine 97.5 0.00029 6.4E-09 67.0 7.8 96 40-195 125-220 (325)
167 PRK08618 ornithine cyclodeamin 97.5 0.00045 9.7E-09 65.7 9.1 96 41-196 125-220 (325)
168 PRK08291 ectoine utilization p 97.5 0.00059 1.3E-08 65.0 9.8 82 38-171 127-208 (330)
169 PLN02928 oxidoreductase family 97.5 0.00032 6.9E-09 67.4 7.9 108 43-203 159-268 (347)
170 PLN00106 malate dehydrogenase 97.5 0.0014 3E-08 62.5 11.8 47 32-82 7-54 (323)
171 COG0569 TrkA K+ transport syst 97.5 0.00046 1E-08 62.3 8.0 38 44-87 1-38 (225)
172 PRK13303 L-aspartate dehydroge 97.5 0.0011 2.3E-08 61.4 10.4 23 43-65 1-23 (265)
173 COG0362 Gnd 6-phosphogluconate 97.4 0.0012 2.6E-08 63.8 10.6 101 44-203 4-108 (473)
174 PLN00203 glutamyl-tRNA reducta 97.4 0.00059 1.3E-08 68.9 8.5 56 27-87 250-305 (519)
175 COG1712 Predicted dinucleotide 97.4 0.00069 1.5E-08 61.0 7.8 82 44-182 1-82 (255)
176 COG2344 AT-rich DNA-binding pr 97.4 0.00097 2.1E-08 58.4 8.3 100 22-182 65-168 (211)
177 TIGR01772 MDH_euk_gproteo mala 97.4 0.0013 2.9E-08 62.3 10.0 34 45-82 1-35 (312)
178 PRK09496 trkA potassium transp 97.4 0.00065 1.4E-08 66.8 8.3 38 44-87 1-38 (453)
179 PLN00112 malate dehydrogenase 97.3 0.0022 4.8E-08 63.5 11.9 44 42-86 99-147 (444)
180 PRK15409 bifunctional glyoxyla 97.3 0.00094 2E-08 63.6 8.9 96 43-203 145-242 (323)
181 PLN02306 hydroxypyruvate reduc 97.3 0.0011 2.4E-08 64.7 9.3 112 43-203 165-278 (386)
182 PRK05086 malate dehydrogenase; 97.3 0.0018 4E-08 61.3 10.4 37 44-83 1-38 (312)
183 cd01336 MDH_cytoplasmic_cytoso 97.3 0.0024 5.3E-08 60.8 11.3 40 43-83 2-44 (325)
184 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.0016 3.4E-08 57.8 9.4 39 42-86 27-65 (200)
185 PTZ00325 malate dehydrogenase; 97.3 0.0021 4.5E-08 61.2 10.7 36 42-81 7-43 (321)
186 COG1052 LdhA Lactate dehydroge 97.3 0.0013 2.7E-08 62.8 9.3 95 43-203 146-242 (324)
187 PRK09496 trkA potassium transp 97.3 0.0018 3.9E-08 63.7 10.6 56 26-87 214-269 (453)
188 PRK06487 glycerate dehydrogena 97.3 0.00085 1.8E-08 63.7 8.0 90 43-203 148-239 (317)
189 PRK07340 ornithine cyclodeamin 97.3 0.0011 2.4E-08 62.6 8.5 44 40-87 122-165 (304)
190 TIGR01758 MDH_euk_cyt malate d 97.3 0.0026 5.5E-08 60.7 10.9 38 45-83 1-41 (324)
191 PRK07589 ornithine cyclodeamin 97.3 0.0011 2.5E-08 63.6 8.6 97 40-194 126-222 (346)
192 PLN02494 adenosylhomocysteinas 97.3 0.0022 4.8E-08 63.8 10.7 69 8-84 221-289 (477)
193 PRK12549 shikimate 5-dehydroge 97.3 0.002 4.4E-08 60.2 10.0 67 14-87 100-166 (284)
194 TIGR00936 ahcY adenosylhomocys 97.2 0.0039 8.5E-08 61.1 12.1 69 8-84 162-230 (406)
195 COG2423 Predicted ornithine cy 97.2 0.0013 2.8E-08 62.8 8.4 96 40-194 127-222 (330)
196 PRK06932 glycerate dehydrogena 97.2 0.0011 2.4E-08 62.8 7.9 91 43-203 147-239 (314)
197 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0048 1E-07 60.7 12.4 70 8-85 169-238 (413)
198 PRK00045 hemA glutamyl-tRNA re 97.2 0.0011 2.4E-08 65.3 7.9 39 43-86 182-220 (423)
199 PRK05472 redox-sensing transcr 97.2 0.0017 3.6E-08 58.0 8.3 55 22-84 65-122 (213)
200 cd05298 GH4_GlvA_pagL_like Gly 97.2 0.0034 7.3E-08 62.2 11.1 111 44-202 1-148 (437)
201 cd05296 GH4_P_beta_glucosidase 97.2 0.0042 9.1E-08 61.2 11.7 111 44-202 1-149 (419)
202 PF00899 ThiF: ThiF family; I 97.2 0.011 2.3E-07 48.8 12.4 41 43-88 2-42 (135)
203 PRK05476 S-adenosyl-L-homocyst 97.2 0.004 8.6E-08 61.4 11.4 36 43-84 212-247 (425)
204 PRK14194 bifunctional 5,10-met 97.1 0.0014 3E-08 61.7 7.6 33 43-81 159-192 (301)
205 PRK00436 argC N-acetyl-gamma-g 97.1 0.0031 6.8E-08 60.5 10.2 40 157-202 65-104 (343)
206 TIGR02992 ectoine_eutC ectoine 97.1 0.0028 6E-08 60.3 9.8 82 39-172 125-206 (326)
207 PF10100 DUF2338: Uncharacteri 97.1 0.008 1.7E-07 58.4 12.8 191 43-282 1-207 (429)
208 cd01487 E1_ThiF_like E1_ThiF_l 97.1 0.0069 1.5E-07 52.5 11.4 33 45-82 1-33 (174)
209 PF00670 AdoHcyase_NAD: S-aden 97.1 0.0048 1E-07 53.0 10.0 51 26-83 7-57 (162)
210 smart00859 Semialdhyde_dh Semi 97.1 0.0036 7.7E-08 50.6 8.8 40 159-201 64-103 (122)
211 PF02629 CoA_binding: CoA bind 97.1 0.0077 1.7E-07 46.9 10.2 79 43-182 3-84 (96)
212 TIGR00507 aroE shikimate 5-deh 97.1 0.0042 9.2E-08 57.4 9.9 39 43-87 117-155 (270)
213 TIGR02356 adenyl_thiF thiazole 97.0 0.0067 1.4E-07 53.8 10.4 41 43-88 21-61 (202)
214 PRK06823 ornithine cyclodeamin 97.0 0.003 6.6E-08 59.9 8.7 97 39-195 124-220 (315)
215 PRK13301 putative L-aspartate 97.0 0.0031 6.6E-08 58.4 8.4 80 44-182 3-84 (267)
216 PF02423 OCD_Mu_crystall: Orni 97.0 0.0028 6.2E-08 60.0 8.3 98 41-196 126-223 (313)
217 TIGR01771 L-LDH-NAD L-lactate 97.0 0.0052 1.1E-07 57.9 9.9 35 48-86 1-35 (299)
218 PRK06407 ornithine cyclodeamin 97.0 0.0031 6.8E-08 59.4 8.3 94 42-194 116-209 (301)
219 cd01483 E1_enzyme_family Super 97.0 0.012 2.6E-07 48.8 11.0 37 45-86 1-37 (143)
220 PRK00258 aroE shikimate 5-dehy 97.0 0.005 1.1E-07 57.2 9.5 67 15-87 96-162 (278)
221 cd01492 Aos1_SUMO Ubiquitin ac 96.9 0.0078 1.7E-07 53.2 10.1 36 43-83 21-56 (197)
222 PRK06046 alanine dehydrogenase 96.9 0.0042 9.1E-08 59.1 8.6 95 41-195 127-221 (326)
223 KOG0069 Glyoxylate/hydroxypyru 96.9 0.0039 8.4E-08 59.5 8.2 95 44-203 163-259 (336)
224 TIGR01035 hemA glutamyl-tRNA r 96.9 0.0023 4.9E-08 63.0 6.6 39 43-86 180-218 (417)
225 PRK13940 glutamyl-tRNA reducta 96.8 0.0024 5.2E-08 62.8 6.6 54 27-87 167-220 (414)
226 PTZ00075 Adenosylhomocysteinas 96.8 0.0056 1.2E-07 61.1 9.2 36 43-84 254-289 (476)
227 TIGR01850 argC N-acetyl-gamma- 96.8 0.0079 1.7E-07 57.8 10.0 44 153-202 61-104 (346)
228 PRK14188 bifunctional 5,10-met 96.8 0.0039 8.5E-08 58.7 7.4 31 43-79 158-189 (296)
229 cd01078 NAD_bind_H4MPT_DH NADP 96.8 0.0068 1.5E-07 53.0 8.4 39 43-87 28-67 (194)
230 PF13380 CoA_binding_2: CoA bi 96.8 0.0098 2.1E-07 48.1 8.7 74 44-183 1-78 (116)
231 PLN02968 Probable N-acetyl-gam 96.8 0.0054 1.2E-07 59.8 8.2 37 42-83 37-74 (381)
232 TIGR01921 DAP-DH diaminopimela 96.7 0.0081 1.8E-07 57.2 8.9 35 43-82 3-38 (324)
233 cd01486 Apg7 Apg7 is an E1-lik 96.7 0.0096 2.1E-07 56.1 9.2 40 45-89 1-40 (307)
234 PRK04148 hypothetical protein; 96.7 0.0081 1.8E-07 50.1 7.8 87 43-186 17-103 (134)
235 KOG1495 Lactate dehydrogenase 96.7 0.019 4.1E-07 53.2 10.6 115 39-202 16-142 (332)
236 PRK12475 thiamine/molybdopteri 96.7 0.014 3.1E-07 55.9 10.3 35 43-82 24-58 (338)
237 PF13460 NAD_binding_10: NADH( 96.7 0.0065 1.4E-07 51.8 7.3 35 46-86 1-36 (183)
238 PRK04207 glyceraldehyde-3-phos 96.7 0.015 3.3E-07 55.7 10.5 35 147-181 65-99 (341)
239 PRK14874 aspartate-semialdehyd 96.6 0.011 2.3E-07 56.6 9.3 96 43-200 1-97 (334)
240 TIGR00518 alaDH alanine dehydr 96.6 0.0079 1.7E-07 58.3 8.3 39 42-86 166-204 (370)
241 PF02254 TrkA_N: TrkA-N domain 96.6 0.01 2.3E-07 47.0 7.7 36 46-87 1-36 (116)
242 KOG2653 6-phosphogluconate deh 96.6 0.0093 2E-07 57.1 8.3 104 40-202 3-110 (487)
243 PLN02819 lysine-ketoglutarate 96.6 0.015 3.4E-07 63.1 11.1 44 42-86 568-620 (1042)
244 PRK11579 putative oxidoreducta 96.6 0.018 3.8E-07 55.0 10.4 32 149-180 51-84 (346)
245 PRK06199 ornithine cyclodeamin 96.6 0.0093 2E-07 58.1 8.5 101 40-194 152-256 (379)
246 PRK08644 thiamine biosynthesis 96.6 0.029 6.2E-07 50.2 11.0 35 43-82 28-62 (212)
247 PF03435 Saccharop_dh: Sacchar 96.6 0.0046 9.9E-08 59.8 6.3 37 46-87 1-38 (386)
248 COG0373 HemA Glutamyl-tRNA red 96.5 0.0056 1.2E-07 60.0 6.6 53 28-87 165-217 (414)
249 COG0673 MviM Predicted dehydro 96.5 0.015 3.3E-07 54.7 9.3 98 42-203 2-103 (342)
250 cd00757 ThiF_MoeB_HesA_family 96.5 0.02 4.4E-07 51.6 9.6 42 43-89 21-62 (228)
251 PRK08328 hypothetical protein; 96.4 0.035 7.5E-07 50.3 10.6 42 43-89 27-68 (231)
252 COG2910 Putative NADH-flavin r 96.4 0.0066 1.4E-07 53.3 5.6 37 44-86 1-38 (211)
253 cd01080 NAD_bind_m-THF_DH_Cycl 96.4 0.0096 2.1E-07 51.5 6.6 47 28-82 31-78 (168)
254 PRK10669 putative cation:proto 96.4 0.011 2.3E-07 60.3 8.0 38 44-87 418-455 (558)
255 PRK08300 acetaldehyde dehydrog 96.4 0.034 7.4E-07 52.5 10.6 37 43-84 4-41 (302)
256 cd01485 E1-1_like Ubiquitin ac 96.4 0.035 7.5E-07 49.1 10.2 36 43-83 19-54 (198)
257 cd05311 NAD_bind_2_malic_enz N 96.3 0.02 4.4E-07 51.7 8.6 35 43-82 25-61 (226)
258 TIGR02355 moeB molybdopterin s 96.3 0.044 9.6E-07 50.0 10.5 42 43-89 24-65 (240)
259 PRK07688 thiamine/molybdopteri 96.2 0.048 1E-06 52.3 11.0 40 43-87 24-63 (339)
260 PRK09310 aroDE bifunctional 3- 96.2 0.022 4.8E-07 57.0 9.0 38 43-86 332-369 (477)
261 PRK06719 precorrin-2 dehydroge 96.2 0.027 5.9E-07 48.0 8.3 34 42-81 12-45 (157)
262 TIGR01809 Shik-DH-AROM shikima 96.2 0.023 5.1E-07 52.9 8.6 40 43-87 125-164 (282)
263 TIGR03215 ac_ald_DH_ac acetald 96.2 0.063 1.4E-06 50.3 11.3 36 44-84 2-38 (285)
264 PF00070 Pyr_redox: Pyridine n 96.2 0.012 2.5E-07 44.0 5.2 35 45-85 1-35 (80)
265 PRK05671 aspartate-semialdehyd 96.2 0.031 6.6E-07 53.6 9.3 24 42-65 3-27 (336)
266 PRK05690 molybdopterin biosynt 96.1 0.051 1.1E-06 49.7 10.0 41 43-88 32-72 (245)
267 PRK06718 precorrin-2 dehydroge 96.1 0.038 8.3E-07 49.0 8.8 34 43-82 10-43 (202)
268 PRK14982 acyl-ACP reductase; P 96.0 0.019 4.1E-07 55.1 7.2 62 20-86 133-195 (340)
269 PRK14179 bifunctional 5,10-met 96.0 0.02 4.4E-07 53.5 6.9 30 43-78 158-188 (284)
270 TIGR01381 E1_like_apg7 E1-like 96.0 0.046 1E-06 56.4 10.0 44 43-91 338-381 (664)
271 PRK12409 D-amino acid dehydrog 96.0 0.0099 2.1E-07 57.6 5.0 34 43-82 1-34 (410)
272 COG0289 DapB Dihydrodipicolina 95.9 0.081 1.8E-06 48.8 10.5 126 43-239 2-129 (266)
273 PRK03659 glutathione-regulated 95.9 0.023 5E-07 58.5 7.8 39 43-87 400-438 (601)
274 PRK06153 hypothetical protein; 95.9 0.044 9.5E-07 53.4 9.1 35 44-83 177-211 (393)
275 PRK12548 shikimate 5-dehydroge 95.9 0.043 9.4E-07 51.3 8.7 35 43-83 126-161 (289)
276 PRK05600 thiamine biosynthesis 95.8 0.12 2.7E-06 50.1 11.9 38 43-85 41-78 (370)
277 PRK05597 molybdopterin biosynt 95.8 0.13 2.7E-06 49.7 11.9 38 43-85 28-65 (355)
278 TIGR02717 AcCoA-syn-alpha acet 95.7 0.052 1.1E-06 54.0 9.2 92 42-202 6-101 (447)
279 PRK08223 hypothetical protein; 95.7 0.083 1.8E-06 49.5 9.8 62 23-89 4-68 (287)
280 CHL00194 ycf39 Ycf39; Provisio 95.7 0.019 4.2E-07 53.8 5.8 35 44-84 1-36 (317)
281 PRK00711 D-amino acid dehydrog 95.7 0.015 3.2E-07 56.4 4.9 33 44-82 1-33 (416)
282 COG4408 Uncharacterized protei 95.7 0.16 3.5E-06 48.3 11.5 190 42-281 3-208 (431)
283 PRK08762 molybdopterin biosynt 95.6 0.15 3.2E-06 49.5 11.5 35 43-82 135-169 (376)
284 PF03059 NAS: Nicotianamine sy 95.5 0.1 2.2E-06 48.8 9.6 110 38-200 116-234 (276)
285 COG1486 CelF Alpha-galactosida 95.5 0.045 9.8E-07 54.0 7.6 83 43-170 3-87 (442)
286 KOG1683 Hydroxyacyl-CoA dehydr 95.5 0.028 6.1E-07 53.9 6.0 129 54-224 1-131 (380)
287 PRK06728 aspartate-semialdehyd 95.5 0.14 2.9E-06 49.4 10.6 40 157-202 65-104 (347)
288 cd01484 E1-2_like Ubiquitin ac 95.5 0.14 3E-06 46.7 10.1 40 45-89 1-40 (234)
289 PF05368 NmrA: NmrA-like famil 95.4 0.066 1.4E-06 47.6 7.8 32 46-83 1-33 (233)
290 PRK12749 quinate/shikimate deh 95.4 0.22 4.7E-06 46.7 11.4 36 43-83 124-159 (288)
291 COG0169 AroE Shikimate 5-dehyd 95.4 0.11 2.4E-06 48.7 9.3 68 15-87 98-165 (283)
292 PLN02383 aspartate semialdehyd 95.4 0.14 3.1E-06 49.2 10.3 40 156-201 65-104 (344)
293 PRK14175 bifunctional 5,10-met 95.3 0.061 1.3E-06 50.4 7.5 33 43-81 158-191 (286)
294 PRK03562 glutathione-regulated 95.3 0.13 2.7E-06 53.4 10.4 40 43-88 400-439 (621)
295 cd01489 Uba2_SUMO Ubiquitin ac 95.2 0.19 4.2E-06 47.7 10.7 40 45-89 1-40 (312)
296 PRK11863 N-acetyl-gamma-glutam 95.2 0.093 2E-06 49.8 8.5 39 157-201 47-85 (313)
297 PF03447 NAD_binding_3: Homose 95.2 0.099 2.1E-06 41.8 7.5 48 149-202 46-95 (117)
298 COG0002 ArgC Acetylglutamate s 95.2 0.1 2.2E-06 50.0 8.5 35 43-82 2-37 (349)
299 PF13241 NAD_binding_7: Putati 95.1 0.095 2.1E-06 41.2 7.1 35 42-82 6-40 (103)
300 PRK07877 hypothetical protein; 95.1 0.074 1.6E-06 55.9 8.1 59 26-89 87-148 (722)
301 PRK08040 putative semialdehyde 95.1 0.17 3.7E-06 48.5 10.0 98 42-202 3-102 (336)
302 COG0686 Ald Alanine dehydrogen 95.1 0.084 1.8E-06 50.0 7.6 42 39-86 164-205 (371)
303 PRK06753 hypothetical protein; 95.1 0.029 6.3E-07 53.5 4.8 34 44-83 1-34 (373)
304 TIGR01296 asd_B aspartate-semi 95.0 0.1 2.2E-06 50.1 8.2 38 157-200 58-95 (339)
305 PRK06349 homoserine dehydrogen 94.9 0.1 2.3E-06 51.5 8.3 23 43-65 3-25 (426)
306 PRK07411 hypothetical protein; 94.9 0.2 4.4E-06 48.9 10.2 42 43-89 38-79 (390)
307 PRK12770 putative glutamate sy 94.9 0.041 9E-07 52.5 5.3 45 32-83 8-52 (352)
308 PRK10206 putative oxidoreducta 94.9 0.13 2.8E-06 49.2 8.7 32 149-180 51-84 (344)
309 PRK07878 molybdopterin biosynt 94.8 0.22 4.8E-06 48.7 10.0 41 43-88 42-82 (392)
310 TIGR00978 asd_EA aspartate-sem 94.8 0.23 4.9E-06 47.6 9.9 38 157-200 70-107 (341)
311 PRK14189 bifunctional 5,10-met 94.7 0.072 1.6E-06 49.9 6.2 32 43-80 158-190 (285)
312 PRK05868 hypothetical protein; 94.7 0.039 8.5E-07 53.1 4.6 36 43-84 1-36 (372)
313 PF01494 FAD_binding_3: FAD bi 94.7 0.048 1E-06 50.6 5.0 35 44-84 2-36 (356)
314 cd01491 Ube1_repeat1 Ubiquitin 94.7 0.31 6.8E-06 45.7 10.3 42 43-89 19-60 (286)
315 PRK07236 hypothetical protein; 94.6 0.054 1.2E-06 52.2 5.3 35 43-83 6-40 (386)
316 PRK08664 aspartate-semialdehyd 94.6 0.29 6.3E-06 47.0 10.2 37 43-84 3-40 (349)
317 PRK06270 homoserine dehydrogen 94.5 0.23 5.1E-06 47.5 9.4 23 43-65 2-24 (341)
318 PRK08163 salicylate hydroxylas 94.4 0.056 1.2E-06 52.0 4.8 35 43-83 4-38 (396)
319 PRK07588 hypothetical protein; 94.4 0.051 1.1E-06 52.3 4.6 34 44-83 1-34 (391)
320 TIGR00561 pntA NAD(P) transhyd 94.4 0.19 4E-06 50.9 8.6 39 43-87 164-202 (511)
321 PRK08773 2-octaprenyl-3-methyl 94.4 0.06 1.3E-06 51.8 5.0 35 42-82 5-39 (392)
322 PRK06598 aspartate-semialdehyd 94.3 0.2 4.4E-06 48.6 8.5 40 157-202 62-103 (369)
323 cd05191 NAD_bind_amino_acid_DH 94.3 0.16 3.4E-06 38.5 6.3 34 42-80 22-55 (86)
324 TIGR01761 thiaz-red thiazoliny 94.3 0.34 7.3E-06 46.7 9.9 40 43-87 3-43 (343)
325 PF01266 DAO: FAD dependent ox 94.3 0.068 1.5E-06 49.6 5.0 31 45-81 1-31 (358)
326 PRK00683 murD UDP-N-acetylmura 94.3 0.11 2.4E-06 50.8 6.7 35 44-84 4-38 (418)
327 PRK07364 2-octaprenyl-6-methox 94.2 0.067 1.4E-06 51.7 5.0 35 43-83 18-52 (415)
328 COG1064 AdhP Zn-dependent alco 94.2 0.26 5.6E-06 47.3 8.7 39 43-87 167-205 (339)
329 PRK05678 succinyl-CoA syntheta 94.2 0.5 1.1E-05 44.4 10.6 93 41-202 6-102 (291)
330 PRK07538 hypothetical protein; 94.2 0.061 1.3E-06 52.3 4.6 34 44-83 1-34 (413)
331 PRK06847 hypothetical protein; 94.2 0.07 1.5E-06 50.8 4.9 35 43-83 4-38 (375)
332 PRK15116 sulfur acceptor prote 94.1 0.076 1.6E-06 49.3 4.9 59 26-89 10-71 (268)
333 PRK07494 2-octaprenyl-6-methox 94.1 0.058 1.3E-06 51.7 4.2 34 44-83 8-41 (388)
334 TIGR01470 cysG_Nterm siroheme 94.0 0.4 8.8E-06 42.6 9.2 35 43-83 9-43 (205)
335 PLN03075 nicotianamine synthas 94.0 0.62 1.3E-05 43.9 10.8 100 42-194 123-230 (296)
336 COG0665 DadA Glycine/D-amino a 94.0 0.08 1.7E-06 50.4 5.0 35 42-82 3-37 (387)
337 PRK11259 solA N-methyltryptoph 94.0 0.072 1.6E-06 50.7 4.6 33 44-82 4-36 (376)
338 TIGR01851 argC_other N-acetyl- 93.9 0.26 5.6E-06 46.8 8.1 39 156-200 45-83 (310)
339 PRK06392 homoserine dehydrogen 93.9 0.22 4.8E-06 47.5 7.7 41 159-202 80-121 (326)
340 PF13450 NAD_binding_8: NAD(P) 93.9 0.11 2.4E-06 37.8 4.4 30 48-83 1-30 (68)
341 PLN02464 glycerol-3-phosphate 93.9 0.12 2.5E-06 53.7 6.2 53 24-82 52-104 (627)
342 KOG1502 Flavonol reductase/cin 93.8 0.21 4.7E-06 47.6 7.4 38 42-85 5-43 (327)
343 cd01488 Uba3_RUB Ubiquitin act 93.8 0.2 4.4E-06 47.1 7.2 40 45-89 1-40 (291)
344 COG0300 DltE Short-chain dehyd 93.8 0.12 2.6E-06 47.9 5.6 42 42-89 5-47 (265)
345 PRK10792 bifunctional 5,10-met 93.8 0.25 5.4E-06 46.3 7.6 33 43-81 159-192 (285)
346 PF08484 Methyltransf_14: C-me 93.7 0.27 5.8E-06 42.2 7.2 97 34-194 59-156 (160)
347 TIGR01377 soxA_mon sarcosine o 93.6 0.094 2E-06 49.9 4.6 32 45-82 2-33 (380)
348 PRK10537 voltage-gated potassi 93.5 0.57 1.2E-05 45.9 9.9 33 43-81 240-272 (393)
349 TIGR03219 salicylate_mono sali 93.5 0.095 2.1E-06 50.9 4.6 34 44-83 1-35 (414)
350 PRK00536 speE spermidine synth 93.5 0.67 1.4E-05 43.0 9.9 100 42-199 72-172 (262)
351 PRK14192 bifunctional 5,10-met 93.5 0.22 4.9E-06 46.6 6.9 33 43-81 159-192 (283)
352 PRK06185 hypothetical protein; 93.4 0.11 2.4E-06 50.1 4.8 35 43-83 6-40 (407)
353 COG1063 Tdh Threonine dehydrog 93.3 0.54 1.2E-05 45.1 9.3 38 45-87 171-208 (350)
354 TIGR01019 sucCoAalpha succinyl 93.2 1.2 2.6E-05 41.8 11.2 92 43-202 6-100 (286)
355 COG0654 UbiH 2-polyprenyl-6-me 93.2 0.11 2.3E-06 50.3 4.4 33 43-81 2-34 (387)
356 TIGR03736 PRTRC_ThiF PRTRC sys 93.1 0.14 3E-06 46.9 4.7 47 42-89 10-62 (244)
357 PRK01747 mnmC bifunctional tRN 93.1 0.11 2.3E-06 54.1 4.5 33 44-82 261-293 (662)
358 PRK06475 salicylate hydroxylas 93.0 0.12 2.6E-06 50.1 4.4 34 44-83 3-36 (400)
359 TIGR02360 pbenz_hydroxyl 4-hyd 93.0 0.13 2.9E-06 49.8 4.8 34 44-83 3-36 (390)
360 PRK09424 pntA NAD(P) transhydr 93.0 0.49 1.1E-05 47.9 8.9 40 42-87 164-203 (509)
361 PLN00141 Tic62-NAD(P)-related 93.0 0.15 3.3E-06 45.9 4.9 38 42-85 16-54 (251)
362 PRK06617 2-octaprenyl-6-methox 93.0 0.12 2.6E-06 49.7 4.3 34 43-82 1-34 (374)
363 PRK15181 Vi polysaccharide bio 93.0 0.17 3.7E-06 48.0 5.4 47 28-83 3-50 (348)
364 TIGR01745 asd_gamma aspartate- 92.9 0.6 1.3E-05 45.3 8.9 40 157-202 61-102 (366)
365 TIGR03364 HpnW_proposed FAD de 92.9 0.14 3E-06 48.7 4.6 32 45-82 2-33 (365)
366 TIGR01988 Ubi-OHases Ubiquinon 92.8 0.14 3E-06 48.7 4.4 32 46-83 2-33 (385)
367 PTZ00367 squalene epoxidase; P 92.8 0.21 4.5E-06 51.3 5.9 34 43-82 33-66 (567)
368 PRK07045 putative monooxygenas 92.8 0.15 3.3E-06 49.0 4.7 36 43-84 5-40 (388)
369 PRK05335 tRNA (uracil-5-)-meth 92.7 0.15 3.2E-06 50.5 4.7 34 43-82 2-35 (436)
370 PRK08013 oxidoreductase; Provi 92.7 0.14 3E-06 49.7 4.4 34 44-83 4-37 (400)
371 TIGR02028 ChlP geranylgeranyl 92.7 0.15 3.3E-06 49.6 4.7 34 44-83 1-34 (398)
372 PLN02520 bifunctional 3-dehydr 92.7 0.38 8.1E-06 49.0 7.6 39 43-87 379-417 (529)
373 PRK14027 quinate/shikimate deh 92.7 0.42 9E-06 44.7 7.4 40 43-87 127-166 (283)
374 PRK08374 homoserine dehydrogen 92.7 0.51 1.1E-05 45.2 8.1 22 43-64 2-23 (336)
375 TIGR01373 soxB sarcosine oxida 92.6 0.14 3.1E-06 49.5 4.4 32 45-82 32-65 (407)
376 PRK08849 2-octaprenyl-3-methyl 92.6 0.16 3.5E-06 48.9 4.6 33 44-82 4-36 (384)
377 PRK05884 short chain dehydroge 92.6 0.19 4.1E-06 44.6 4.8 38 44-87 1-39 (223)
378 PLN02686 cinnamoyl-CoA reducta 92.6 0.3 6.5E-06 46.9 6.5 58 22-85 7-90 (367)
379 PLN02852 ferredoxin-NADP+ redu 92.6 0.2 4.4E-06 50.5 5.5 41 37-83 20-62 (491)
380 PRK08020 ubiF 2-octaprenyl-3-m 92.6 0.16 3.4E-06 48.8 4.6 34 43-82 5-38 (391)
381 PF00743 FMO-like: Flavin-bind 92.5 0.18 3.9E-06 51.3 5.0 35 44-84 2-36 (531)
382 PRK14851 hypothetical protein; 92.5 0.61 1.3E-05 48.9 9.0 59 26-89 23-84 (679)
383 cd05212 NAD_bind_m-THF_DH_Cycl 92.5 1.1 2.4E-05 37.5 9.0 35 153-195 64-98 (140)
384 PLN02172 flavin-containing mon 92.5 0.18 3.8E-06 50.4 4.9 35 43-83 10-44 (461)
385 PRK00141 murD UDP-N-acetylmura 92.4 0.37 8E-06 48.1 7.1 36 42-83 14-49 (473)
386 PRK08340 glucose-1-dehydrogena 92.4 0.23 4.9E-06 44.8 5.1 38 44-87 1-39 (259)
387 PLN00093 geranylgeranyl diphos 92.4 0.22 4.8E-06 49.5 5.4 36 42-83 38-73 (450)
388 PRK10538 malonic semialdehyde 92.3 0.24 5.2E-06 44.3 5.2 37 44-86 1-38 (248)
389 PRK07102 short chain dehydroge 92.2 0.25 5.4E-06 43.9 5.1 38 43-86 1-39 (243)
390 PRK08267 short chain dehydroge 92.2 0.25 5.5E-06 44.3 5.2 39 43-87 1-40 (260)
391 PRK08243 4-hydroxybenzoate 3-m 92.2 0.2 4.3E-06 48.4 4.7 34 44-83 3-36 (392)
392 cd05295 MDH_like Malate dehydr 92.2 1.7 3.8E-05 43.3 11.3 38 43-81 123-163 (452)
393 cd01076 NAD_bind_1_Glu_DH NAD( 92.1 0.63 1.4E-05 42.1 7.6 55 19-80 8-63 (227)
394 cd00755 YgdL_like Family of ac 92.1 0.21 4.6E-06 45.4 4.5 42 43-89 11-52 (231)
395 PLN02985 squalene monooxygenas 92.1 0.25 5.4E-06 50.0 5.5 35 43-83 43-77 (514)
396 COG0136 Asd Aspartate-semialde 92.1 0.77 1.7E-05 43.9 8.4 39 158-202 64-102 (334)
397 PRK08017 oxidoreductase; Provi 91.9 0.25 5.4E-06 44.1 4.8 37 44-86 3-40 (256)
398 PRK14852 hypothetical protein; 91.9 0.53 1.2E-05 51.0 7.9 42 43-89 332-373 (989)
399 PRK05714 2-octaprenyl-3-methyl 91.9 0.18 3.8E-06 48.8 4.0 33 44-82 3-35 (405)
400 PTZ00188 adrenodoxin reductase 91.8 0.27 6E-06 49.5 5.3 43 34-83 31-74 (506)
401 PRK14176 bifunctional 5,10-met 91.8 0.66 1.4E-05 43.5 7.5 32 43-80 164-196 (287)
402 PRK07608 ubiquinone biosynthes 91.8 0.23 4.9E-06 47.5 4.6 34 44-83 6-39 (388)
403 PRK08177 short chain dehydroge 91.8 0.33 7E-06 42.8 5.3 38 43-86 1-39 (225)
404 PRK06124 gluconate 5-dehydroge 91.7 0.39 8.4E-06 43.0 5.8 40 42-87 10-50 (256)
405 PRK07023 short chain dehydroge 91.7 0.27 5.8E-06 43.7 4.7 35 43-83 1-36 (243)
406 PRK12829 short chain dehydroge 91.7 0.41 8.9E-06 42.8 5.9 37 44-86 12-49 (264)
407 PRK08850 2-octaprenyl-6-methox 91.6 0.21 4.6E-06 48.3 4.3 32 44-81 5-36 (405)
408 PRK11728 hydroxyglutarate oxid 91.6 0.28 6E-06 47.4 5.0 34 44-82 3-37 (393)
409 PRK11101 glpA sn-glycerol-3-ph 91.5 0.28 6.1E-06 49.9 5.2 33 44-82 7-39 (546)
410 TIGR00137 gid_trmFO tRNA:m(5)U 91.5 0.22 4.9E-06 49.3 4.3 33 45-83 2-34 (433)
411 cd05211 NAD_bind_Glu_Leu_Phe_V 91.5 0.85 1.8E-05 41.0 7.7 35 42-82 22-57 (217)
412 PRK09126 hypothetical protein; 91.5 0.23 5E-06 47.6 4.4 34 44-83 4-37 (392)
413 TIGR02130 dapB_plant dihydrodi 91.5 2 4.3E-05 40.1 10.3 69 151-239 58-128 (275)
414 PRK07231 fabG 3-ketoacyl-(acyl 91.5 0.34 7.4E-06 42.9 5.1 37 44-86 6-43 (251)
415 PRK07454 short chain dehydroge 91.4 0.42 9.1E-06 42.3 5.6 39 42-86 5-44 (241)
416 TIGR01408 Ube1 ubiquitin-activ 91.4 0.89 1.9E-05 49.7 9.0 41 44-89 25-65 (1008)
417 PRK12814 putative NADPH-depend 91.3 0.32 6.9E-06 50.6 5.5 36 42-83 192-227 (652)
418 PRK03369 murD UDP-N-acetylmura 91.3 0.55 1.2E-05 47.1 7.0 35 43-83 12-46 (488)
419 PLN02927 antheraxanthin epoxid 91.3 0.27 5.9E-06 51.3 4.9 35 42-82 80-114 (668)
420 PRK06126 hypothetical protein; 91.2 0.3 6.5E-06 49.4 5.0 34 44-83 8-41 (545)
421 PRK12810 gltD glutamate syntha 91.2 0.29 6.4E-06 48.7 4.9 36 42-83 142-177 (471)
422 PF00185 OTCace: Aspartate/orn 91.2 4 8.7E-05 34.6 11.2 33 44-82 3-37 (158)
423 PRK06101 short chain dehydroge 91.2 0.36 7.9E-06 43.0 5.0 39 43-87 1-40 (240)
424 PRK11749 dihydropyrimidine deh 91.1 0.34 7.3E-06 48.0 5.1 36 42-83 139-174 (457)
425 cd00762 NAD_bind_malic_enz NAD 91.1 2.5 5.4E-05 39.0 10.4 47 152-202 96-146 (254)
426 TIGR02032 GG-red-SF geranylger 91.1 0.32 6.9E-06 44.1 4.6 33 45-83 2-34 (295)
427 TIGR00031 UDP-GALP_mutase UDP- 91.0 0.32 7E-06 47.4 4.8 33 44-82 2-34 (377)
428 PRK07774 short chain dehydroge 91.0 0.53 1.1E-05 41.8 5.9 37 44-86 7-44 (250)
429 PRK11908 NAD-dependent epimera 90.9 0.33 7.2E-06 45.8 4.7 36 43-83 1-37 (347)
430 PRK07523 gluconate 5-dehydroge 90.9 0.52 1.1E-05 42.2 5.7 37 44-86 11-48 (255)
431 TIGR01318 gltD_gamma_fam gluta 90.9 0.41 8.9E-06 47.7 5.5 35 42-82 140-174 (467)
432 PRK12550 shikimate 5-dehydroge 90.9 0.88 1.9E-05 42.3 7.4 39 44-87 123-161 (272)
433 PRK05993 short chain dehydroge 90.9 0.4 8.7E-06 43.8 5.1 38 44-87 5-43 (277)
434 PRK08132 FAD-dependent oxidore 90.9 0.34 7.4E-06 49.1 5.0 35 43-83 23-57 (547)
435 PRK07326 short chain dehydroge 90.8 0.51 1.1E-05 41.5 5.6 37 44-86 7-44 (237)
436 PRK06057 short chain dehydroge 90.8 0.44 9.6E-06 42.7 5.2 37 44-86 8-45 (255)
437 TIGR01292 TRX_reduct thioredox 90.8 0.33 7.2E-06 44.2 4.5 32 45-82 2-33 (300)
438 PRK08244 hypothetical protein; 90.7 0.32 7E-06 48.5 4.6 35 44-84 3-37 (493)
439 PRK12769 putative oxidoreducta 90.7 0.33 7.2E-06 50.4 4.9 36 42-83 326-361 (654)
440 PRK13512 coenzyme A disulfide 90.7 0.39 8.5E-06 47.3 5.1 37 43-83 1-37 (438)
441 PRK07024 short chain dehydroge 90.6 0.45 9.8E-06 42.7 5.1 39 43-87 2-41 (257)
442 PRK00517 prmA ribosomal protei 90.6 2.6 5.6E-05 38.3 10.1 39 42-87 119-157 (250)
443 PRK06183 mhpA 3-(3-hydroxyphen 90.6 0.38 8.2E-06 48.7 5.1 35 43-83 10-44 (538)
444 PRK06184 hypothetical protein; 90.6 0.35 7.7E-06 48.4 4.8 35 44-84 4-38 (502)
445 PRK12779 putative bifunctional 90.5 0.4 8.7E-06 52.1 5.4 37 40-82 303-339 (944)
446 PRK12809 putative oxidoreducta 90.5 0.34 7.5E-06 50.3 4.8 35 43-83 310-344 (639)
447 PRK14106 murD UDP-N-acetylmura 90.5 0.38 8.2E-06 47.3 4.9 34 43-82 5-38 (450)
448 PRK05562 precorrin-2 dehydroge 90.5 1.3 2.9E-05 40.0 7.9 35 42-82 24-58 (223)
449 PRK13394 3-hydroxybutyrate deh 90.4 0.63 1.4E-05 41.5 5.8 39 43-87 7-46 (262)
450 KOG1399 Flavin-containing mono 90.4 0.31 6.7E-06 48.6 4.1 35 43-83 6-40 (448)
451 TIGR01316 gltA glutamate synth 90.3 0.42 9.2E-06 47.3 5.0 35 42-82 132-166 (449)
452 PRK05653 fabG 3-ketoacyl-(acyl 90.3 0.55 1.2E-05 41.2 5.3 37 44-86 6-43 (246)
453 PRK12831 putative oxidoreducta 90.3 0.47 1E-05 47.3 5.3 35 42-82 139-173 (464)
454 PF01262 AlaDh_PNT_C: Alanine 90.3 0.57 1.2E-05 40.0 5.2 40 42-87 19-58 (168)
455 PLN02695 GDP-D-mannose-3',5'-e 90.3 0.39 8.5E-06 46.2 4.6 35 42-82 20-55 (370)
456 PRK10157 putative oxidoreducta 90.3 0.45 9.7E-06 46.8 5.1 35 43-83 5-39 (428)
457 TIGR03466 HpnA hopanoid-associ 90.2 0.39 8.4E-06 44.4 4.5 35 44-84 1-36 (328)
458 KOG1494 NAD-dependent malate d 90.2 1.1 2.3E-05 42.1 7.2 45 34-82 19-64 (345)
459 PRK05866 short chain dehydroge 90.2 0.5 1.1E-05 43.8 5.1 38 44-87 41-79 (293)
460 PRK12939 short chain dehydroge 90.1 0.69 1.5E-05 40.9 5.8 39 43-87 7-46 (250)
461 PRK12266 glpD glycerol-3-phosp 90.1 0.46 9.9E-06 47.9 5.2 33 44-82 7-39 (508)
462 PRK07060 short chain dehydroge 90.1 0.53 1.2E-05 41.5 5.1 37 44-86 10-47 (245)
463 PRK07109 short chain dehydroge 90.1 0.62 1.4E-05 44.2 5.8 39 43-87 8-47 (334)
464 PRK08265 short chain dehydroge 90.0 0.69 1.5E-05 41.8 5.8 39 43-87 6-45 (261)
465 PRK05257 malate:quinone oxidor 90.0 0.42 9E-06 48.2 4.7 35 44-82 6-40 (494)
466 PLN02214 cinnamoyl-CoA reducta 90.0 0.53 1.1E-05 44.7 5.2 39 40-84 7-46 (342)
467 PF13738 Pyr_redox_3: Pyridine 89.9 0.45 9.8E-06 40.9 4.4 32 47-84 1-33 (203)
468 PRK06567 putative bifunctional 89.9 0.36 7.8E-06 52.4 4.4 34 42-81 382-415 (1028)
469 TIGR01989 COQ6 Ubiquinone bios 89.9 0.37 7.9E-06 47.4 4.2 31 45-81 2-36 (437)
470 PRK06949 short chain dehydroge 89.9 0.56 1.2E-05 41.8 5.1 39 43-87 9-48 (258)
471 PRK05867 short chain dehydroge 89.9 0.63 1.4E-05 41.6 5.4 38 44-87 10-48 (253)
472 PRK11445 putative oxidoreducta 89.8 0.42 9E-06 45.6 4.4 34 43-83 1-34 (351)
473 PRK10675 UDP-galactose-4-epime 89.8 0.5 1.1E-05 44.2 4.9 33 44-82 1-34 (338)
474 cd05312 NAD_bind_1_malic_enz N 89.8 2.3 5E-05 39.8 9.2 47 152-202 95-145 (279)
475 PRK06953 short chain dehydroge 89.7 0.54 1.2E-05 41.3 4.7 38 43-86 1-39 (222)
476 TIGR01408 Ube1 ubiquitin-activ 89.7 0.3 6.5E-06 53.3 3.7 78 11-89 383-465 (1008)
477 PRK07890 short chain dehydroge 89.7 0.57 1.2E-05 41.8 5.0 37 44-86 6-43 (258)
478 PRK06194 hypothetical protein; 89.7 0.76 1.6E-05 41.9 5.9 38 43-86 6-44 (287)
479 TIGR01546 GAPDH-II_archae glyc 89.7 1.5 3.4E-05 42.0 8.1 26 147-172 62-87 (333)
480 PRK08309 short chain dehydroge 89.7 0.6 1.3E-05 40.5 4.9 37 44-86 1-37 (177)
481 COG1648 CysG Siroheme synthase 89.7 2.1 4.6E-05 38.3 8.5 35 42-82 11-45 (210)
482 PRK06180 short chain dehydroge 89.6 0.6 1.3E-05 42.6 5.1 38 43-86 4-42 (277)
483 COG0644 FixC Dehydrogenases (f 89.6 0.48 1E-05 46.0 4.7 35 43-83 3-37 (396)
484 TIGR00292 thiazole biosynthesi 89.6 0.68 1.5E-05 42.5 5.4 34 44-83 22-55 (254)
485 PRK08703 short chain dehydroge 89.6 0.79 1.7E-05 40.6 5.8 38 44-87 7-45 (239)
486 PRK05693 short chain dehydroge 89.6 0.58 1.3E-05 42.5 5.0 38 43-86 1-39 (274)
487 COG3349 Uncharacterized conser 89.6 0.43 9.4E-06 47.8 4.4 34 44-83 1-34 (485)
488 PRK04965 NADH:flavorubredoxin 89.5 0.67 1.5E-05 44.5 5.6 47 30-83 129-175 (377)
489 PRK13369 glycerol-3-phosphate 89.5 0.52 1.1E-05 47.3 5.0 33 44-82 7-39 (502)
490 TIGR03649 ergot_EASG ergot alk 89.5 0.45 9.7E-06 43.6 4.2 35 45-85 1-36 (285)
491 cd01493 APPBP1_RUB Ubiquitin a 89.5 3.6 7.7E-05 40.8 10.7 50 28-82 2-54 (425)
492 PRK04176 ribulose-1,5-biphosph 89.5 0.72 1.6E-05 42.4 5.5 34 44-83 26-59 (257)
493 COG0499 SAM1 S-adenosylhomocys 89.5 1.5 3.2E-05 42.5 7.6 68 8-83 176-243 (420)
494 TIGR02023 BchP-ChlP geranylger 89.4 0.49 1.1E-05 45.6 4.5 31 45-81 2-32 (388)
495 PRK12771 putative glutamate sy 89.4 0.51 1.1E-05 48.1 4.9 34 43-82 137-170 (564)
496 PRK07190 hypothetical protein; 89.3 0.58 1.2E-05 47.0 5.1 35 44-84 6-40 (487)
497 PRK07845 flavoprotein disulfid 89.3 0.53 1.1E-05 46.8 4.8 34 43-82 1-34 (466)
498 PRK06172 short chain dehydroge 89.2 0.68 1.5E-05 41.3 5.1 38 44-87 8-46 (253)
499 PRK06924 short chain dehydroge 89.1 0.65 1.4E-05 41.3 4.9 34 43-82 1-35 (251)
500 PRK05875 short chain dehydroge 89.1 0.69 1.5E-05 41.9 5.1 37 44-86 8-45 (276)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=8.2e-43 Score=325.37 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=183.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|+|+|+||+++|..|+++ | |+|++|.|+++..++++..| +|+.|++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~~~~----------------~N~~yLp~i----- 53 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEINETR----------------ENPKYLPGI----- 53 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHHhcC----------------cCccccCCc-----
Confidence 58999999999999999999999 8 99999999999887765332 367788764
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++ +++.+++|+.+++++||+|+++||++.++++++++++++.+ ++++++++||+.+
T Consensus 54 --~lp------------------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 54 --LLP------------------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred --cCC------------------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 332 37899999999999999999999999999999999988887 8999999999999
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+ +..++++++.+.+|.. ++++++||+||+|++++.|+.+++ +.|.+.++.++.+|++.+|++|.++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~~--~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPDN--PIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCCC--eEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 7 6789999999999753 489999999999999999987766 5777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
++|+||||||||+||+||++++
T Consensus 184 igGAlKNViAIA~Gi~dGlg~G 205 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGLG 205 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999874
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-41 Score=322.53 Aligned_cols=223 Identities=28% Similarity=0.440 Sum_probs=186.8
Q ss_pred HHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCC----CCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhh
Q 022050 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGY----LRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (303)
Q Consensus 33 ~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~----~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (303)
|.++++.+++.|||+|||+|+||+++|..|+++ |. | .|+|.+|.|+++.- .+++.+.+++.+
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~--~~~V~lw~~~~~~~----~~~~~~~in~~~------- 66 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIF--HNEVRMWVLEEIVE----GEKLSDIINTKH------- 66 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCC--CCeEEEEEeccccc----chHHHHHHHhcC-------
Confidence 568899999999999999999999999999998 61 1 16899999998620 011122344333
Q ss_pred hhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH--Hhhc
Q 022050 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKE 186 (303)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~--~l~~ 186 (303)
+|+.|++++ +++ .++.+++|+.+++++||+||++||++.++++++++++ ++++
T Consensus 67 ~N~~ylp~~-------~Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~ 121 (365)
T PTZ00345 67 ENVKYLPGI-------KLP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK 121 (365)
T ss_pred CCcccCCCC-------cCC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC
Confidence 477787765 332 3789999999999999999999999999999999998 7765
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhc
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~ 265 (303)
++++||++||++.++ ....++++++.+.++. ++.+++||+||.|++++.|+.+++ +.+.+.++.++++|+
T Consensus 122 ---~~~iIS~aKGIe~~t---~~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~ 192 (365)
T PTZ00345 122 ---HARAISLTKGIIVEN---GKPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFD 192 (365)
T ss_pred ---CCEEEEEeCCcccCC---CCcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhC
Confidence 678999999999863 1236899999999963 578999999999999999987766 577788999999999
Q ss_pred CCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 266 ~~g~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
+++|++|.++|++|+|+||+||||||||+||++||+++
T Consensus 193 ~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G 230 (365)
T PTZ00345 193 RPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLG 230 (365)
T ss_pred CCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999874
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=4.5e-38 Score=299.05 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=175.0
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCC---eeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDK---VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~---~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
||+|||+|+||+++|..|+.+ |...+. ++|++|.|+++.-. +.+.+.+++.+ +|+.|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~~----~~~~~~in~~~-------~n~~ylpgi---- 64 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIEG----RNLTEIINTTH-------ENVKYLPGI---- 64 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccCC----HHHHHHHHhcC-------CCccccCCC----
Confidence 699999999999999999998 621111 69999999542100 11223344332 366677654
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+++ .++++++|+++++++||+||++||++.++++++++.+++++ ++++||++||+.
T Consensus 65 ---~Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 65 ---KLP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ---cCC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 232 36889999999999999999999999999999999999987 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCC----hhhHHHHHHHhcCCCeEEEecCC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA----EKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~----~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+ .++..++++++++.++. ++.+++||++|.|++++.|+.+++ +.+ .+.++.++++|++++|++|.++|
T Consensus 121 ~~---~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VS---KDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cC---CCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 75 12568899999999953 578999999999999999987765 566 67899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 277 LVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
++|+|+||+||||||||+||++||+++
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~g 221 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGWG 221 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999874
No 4
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=2.2e-37 Score=286.54 Aligned_cols=238 Identities=36% Similarity=0.455 Sum_probs=202.2
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCC-CCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~-~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
.+.++++.++.+++.+..+.||+|||+|+||++||+.++.+.+.+ .-..+|.+|.+.++.-.+ .++|.++|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~he- 79 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRHE- 79 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhccccc-
Confidence 356888999999999988999999999999999999998874211 111479999998864432 4689999999884
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
|++|+++. ++| .++.+++|+.+++++||++|.++|.|.+..++++|..+
T Consensus 80 ------N~KYlpg~-------~lP------------------~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 80 ------NVKYLPGI-------KLP------------------ENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred ------cccccCCc-------cCC------------------CCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 78888875 443 37889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCC-hh-hHHHHH
Q 022050 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA-EK-WRKPLA 261 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~-~~-~~~~i~ 261 (303)
+++ +...||++||++... .-++..+++++|.+.+|.| +.++.|||+|.|+++..++.+.++.. .. .-..++
T Consensus 129 vk~---~~~aISL~KG~e~~~-~g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGE-EGPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccC-CCCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 788999999999752 1224678999999999865 67999999999999999988877543 33 334599
Q ss_pred HHhcCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 262 ~lf~~~g~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
++|++++|++++.+|..|+|+||+||||||||+||+|||+++
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g 243 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLG 243 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCC
Confidence 999999999999999999999999999999999999999874
No 5
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-34 Score=272.58 Aligned_cols=205 Identities=29% Similarity=0.444 Sum_probs=172.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|+||+++|..|+++ | +|++|.|+++..+.++.+|+ |..+++.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~~~~----------------~~~~l~~----- 57 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDINDNHR----------------NSRYLGN----- 57 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHhcCC----------------CcccCCC-----
Confidence 468999999999999999999998 6 48899999988776654321 2223321
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+++ .++.+++|+.++++++|+||++||+++++++++++++++++ ++++++++||++
T Consensus 58 -~~~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi~ 115 (341)
T PRK12439 58 -DVVLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGLE 115 (341)
T ss_pred -CcccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCCc
Confidence 00111 25778899988899999999999999999999999999987 788999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
.. +..++++++.+.++. .++.+++||+++.+++.|.++.+++ +.+.+.++.++++|++++|+++.++|++|+
T Consensus 116 ~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 116 QG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred CC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 86 568889999998863 3578899999999999999876655 556678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
||+|+|||+|||++||++|++++
T Consensus 189 e~~~alkNv~aia~G~~~g~~~g 211 (341)
T PRK12439 189 EMAGALKNVFAIAVGMGYSLGIG 211 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998753
No 6
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=6e-30 Score=241.79 Aligned_cols=203 Identities=20% Similarity=0.355 Sum_probs=166.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.++ .+..++++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESINTKR----------------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHHHcC----------------CCcccCCCC------
Confidence 6899999999999999999999 8 99999999988776654321 122223221
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHH-HhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~-~l~~~~~~~iivs~~nGi~ 201 (303)
.++ .++++++|+.+++ .++|+||++||+++++++++++.+ ++.+ ++.+++++||+.
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 111 2577888888776 589999999999999999999998 8876 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
.. +..++++.+.+.++. +++.+++||+++.+++.+.++.+.. +.+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 346678889888864 4677899999999999877755544 445567799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
||+|++||+||+++|+++|+.++
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~~ 206 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNLG 206 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999998653
No 7
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=9.1e-27 Score=220.38 Aligned_cols=200 Identities=28% Similarity=0.398 Sum_probs=155.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|++++.+.++..+ .++.++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~~~----------------~~~~~~~g~----- 56 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAAER----------------ENREYLPGV----- 56 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhC----------------cccccCCCC-----
Confidence 58999999999999999999999 8 99999999988766543211 122222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++ .++..+++++++++++|+||++||+++++++++.+ ++ +.+++++++|+.+
T Consensus 57 --~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l----~~---~~~vi~~~~Gi~~ 109 (328)
T PRK14618 57 --ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGL----PR---ALGYVSCAKGLAP 109 (328)
T ss_pred --cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhc----Cc---CCEEEEEeecccc
Confidence 110 13667788888889999999999999988887653 44 6789999999986
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
.. .....+++.+.+... ..+.++.||+++.+++.+.+...+. +.+.+..+.++++|+..+++++.++|++|++
T Consensus 110 ~~---~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~ 183 (328)
T PRK14618 110 DG---GRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVE 183 (328)
T ss_pred CC---CccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchh
Confidence 52 123345555544221 2356889999999999988765544 5677788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
|+++|||+|||++|+++++++
T Consensus 184 ~~~~lkN~~ai~~G~~~~~k~ 204 (328)
T PRK14618 184 LGGALKNVIALAAGMVDGLKL 204 (328)
T ss_pred hhHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999875
No 8
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=7.6e-26 Score=212.58 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=151.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|+||+++|..|+.+ | ++|++|+|++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~--------------------------------------- 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG--------------------------------------- 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC---------------------------------------
Confidence 48999999999999999999999 8 99999999752
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~ 201 (303)
.+++++++++|+||+++|+..++++++++.++ +++ +++++++++|+.
T Consensus 39 -----------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi~ 86 (308)
T PRK14619 39 -----------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGLD 86 (308)
T ss_pred -----------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCccc
Confidence 12335567899999999999999999998875 565 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
+. +...+++.+..+++. .++.+++||+++.++..+.+..++. +.+.+..+.++++|+..+++++.++|++|+
T Consensus 87 ~~-----~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~ 159 (308)
T PRK14619 87 PE-----TTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGT 159 (308)
T ss_pred CC-----CCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhh
Confidence 86 456788888877753 3677889999999999887765555 567778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
+|+++|||+|||++|+++++++
T Consensus 160 ~~~~alkNv~ai~~G~~~~~~l 181 (308)
T PRK14619 160 ELGGTLKNVIAIAAGVCDGLQL 181 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999865
No 9
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.94 E-value=1.5e-25 Score=210.65 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=165.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|+||+++|..|+++ | ++|++|+|++++++.++.++. ++.+.++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADRE----------------NPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcCc----------------ccccCCCC-----
Confidence 58999999999999999999999 8 899999999887765432210 11111111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+ ..++.++++++++++++|+||++||+++++++++++.+++++ ++++++++||+.+
T Consensus 54 --~~------------------~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KL------------------PDNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cC------------------CCCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 11 024667778887888999999999999999999999998887 7899999999998
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+ +...+++.+.+.++.. ....++.||+++.+...+.+..+.. +.+.+..+.+.++|+..+++++.++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 3566778888877531 2467899999999988887665544 4567788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
|++++||+|++++|+..++.+
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~ 205 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGL 205 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998764
No 10
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.94 E-value=7.9e-26 Score=192.93 Aligned_cols=154 Identities=32% Similarity=0.561 Sum_probs=121.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|+|+|+||+++|..|+.+ | ++|++|.|+++.++.++.+| .|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~~~~----------------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEINETR----------------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHHHHT----------------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHHHhC----------------CCCCCCCCc-------
Confidence 799999999999999999999 8 99999999998877655432 244555543
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcccc
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~ 204 (303)
.++ .++.+++|++++++++|+||++||++..++++++|++++++ ++++++++||+...
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 232 26889999999999999999999999999999999999987 88999999999665
Q ss_pred ccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChh
Q 022050 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEK 255 (303)
Q Consensus 205 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~ 255 (303)
+..++++++.+.++.+ ++++++||++++|+..+.|+.+++ +.+.+
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 5778999999999864 389999999999999999987766 44443
No 11
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.81 E-value=2.6e-19 Score=166.60 Aligned_cols=193 Identities=19% Similarity=0.190 Sum_probs=139.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+.+|..|+++ | ++|++++|++++++.++.+++ .... ++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~-----~~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED-----GE 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC-----Cc
Confidence 7899999999999999999998 8 899999998876665432221 0000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. .++..+++..++ +++|+||++||++++++++++|.+++.+ ++.|++++||+...
T Consensus 51 --~~------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 51 --IT------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred --ee------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 00 022344556554 8999999999999999999999999887 78999999998764
Q ss_pred cccccccCCHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+.+.++++... ...+.+.+|++..+.+.+...........+..+.+.++|+..++.++.++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 34566664321 0123467888887776654221111122234788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhc
Q 022050 278 VTHEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
.+.+|.|.+.|+.....+.+.|..
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~ 199 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCT 199 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCC
Confidence 999999999998777776666543
No 12
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=2.6e-17 Score=152.49 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=125.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||.+|+..|.++ |++.+ .+|++|+|++++++.+. ..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l~-------------------------~~------- 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNAS-------------------------DK------- 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHHH-------------------------Hh-------
Confidence 6899999999999999999988 74333 57999999876554211 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.++..+++..+.+++||+||+|||++.+.++++++.+++++ +++|||+..|+..+
T Consensus 49 ----------------------~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i~ 103 (272)
T PRK12491 49 ----------------------YGITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSIK 103 (272)
T ss_pred ----------------------cCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcHH
Confidence 02344567777788999999999999999999999998876 78999999999885
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
.|++.++.. .-+++.+||++..++.|.+.+... ..+.++.+.+.++|+..|-..++.++.+
T Consensus 104 ------------~l~~~l~~~--~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~ 165 (272)
T PRK12491 104 ------------STENEFDRK--LKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLM 165 (272)
T ss_pred ------------HHHHhcCCC--CcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHh
Confidence 477777632 236899999999999996543322 2245578999999999998888876654
No 13
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.74 E-value=2.3e-17 Score=153.79 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=129.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+| ++++++++.+++ ...... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g~-------------------~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERGL-------------------VIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCCe-------------------EEEeCC---Ce
Confidence 7999999999999999999999 8 99999999 666655432221 111000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. .+...+++.+++.+++|+||+|||+++++++++++++++.+ +++|++++||+...
T Consensus 52 ~~--------------------~~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AV--------------------VPGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EE--------------------ecceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 00 02234566666668899999999999999999999998877 78999999999764
Q ss_pred cccccccCCHHHHHHhHhCCCCcc------EEEEeCCCcHHHHhccCceEEEEe----CChhhHHHHHHHhcCCCeEEEe
Q 022050 204 LEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~------~~v~~GP~~a~ev~~g~~~~~~~~----~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
+.+.++++....- .+.+.+|+.......+. +.++ ...+..+.+.++|...++.++.
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~---~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~ 174 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHR---LTFGEIPGQRSERTRAVRDALAGARLEVVL 174 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCc---EEEcCCCCCcCHHHHHHHHHHHhCCCCcee
Confidence 3466666532100 12223444433222121 2222 1234667899999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHH
Q 022050 274 NGDLVTHEVMGGLKNVYAIGAGTI 297 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~Ai~~G~~ 297 (303)
++|+...+|.+.+.|...-+.+.+
T Consensus 175 ~~di~~~~w~Kl~~N~~~n~l~a~ 198 (305)
T PRK12921 175 SENIRQDIWRKLLFNAVMNGMTAL 198 (305)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999654443433
No 14
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.74 E-value=4.7e-17 Score=149.56 Aligned_cols=162 Identities=22% Similarity=0.185 Sum_probs=128.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||.+|+..|.++ |.+.+ .+|.+.+|++++.+++. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~l~-------------------------~------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAALA-------------------------A------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHHHH-------------------------H-------
Confidence 58999999999999999999998 74443 68999999987653210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
++ ++..++|..+++.++|+||+||||+.++++++++++ ..+ +++|||+..|++.
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 11 122367777888999999999999999999999998 555 7899999999988
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
+ .+.++++ . ..+++.+||++..++.|.+.+... ..+.++.+.+.++|+.-|-.+++.++.+-
T Consensus 101 ~------------~l~~~l~-~--~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~d 163 (266)
T COG0345 101 E------------TLERLLG-G--LRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMD 163 (266)
T ss_pred H------------HHHHHcC-C--CceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhh
Confidence 5 4788887 2 247899999999999997554332 23556788999999999999998877653
No 15
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.73 E-value=6.4e-17 Score=153.45 Aligned_cols=185 Identities=20% Similarity=0.211 Sum_probs=129.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|++. .+.++.+++ ......+ .
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~~~~~g~-------------------~~~~~~~--~ 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDELRAHGL-------------------TLTDYRG--R 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHHHHhcCc-------------------eeecCCC--c
Confidence 58999999999999999999999 8 99999999753 333222110 0100000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+... ...++.++++. +++.++|+||++||+..+.++++++.+++.+ +++|++++||+..
T Consensus 54 ~~~~-----------------~~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 54 DVRV-----------------PPSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred ceec-----------------ccceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 0000 00135566666 4678999999999999999999999998877 7889999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCC-----ccE-EEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPI-----ENI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~-----~~~-~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
. +.+.+.++... .++ ++..||+.+.....|.. .+. +.+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l---~~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGAL---AIE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCce---Eec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 34666654321 011 24668877754444431 222 224568899999999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVYA 291 (303)
Q Consensus 277 i~g~e~~~~lkNv~A 291 (303)
+.+.+|.|.+.|.+.
T Consensus 178 i~~~~w~Kl~~N~~~ 192 (341)
T PRK08229 178 MRAVQWAKLLLNLNN 192 (341)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999999999743
No 16
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.72 E-value=5.4e-17 Score=152.74 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=136.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|+|+|+||+.+|..|++. | ++|+++.|++. ++++++++| ...... +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~---~- 50 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEG---G- 50 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCC---C-
Confidence 7999999999999999999999 8 89999999986 776655443 111100 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. ......+++. +....+|+||++||+++++++++.+.+++++ ++.|++++||+++.
T Consensus 51 -~~------------------~~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 51 -NF------------------TTPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred -cc------------------ccccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 00 0012222333 3466899999999999999999999999998 88999999999986
Q ss_pred cccccccCCHHHHHHhHhCCC------CccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 204 LEAVPRIITPTQMINRATGVP------IENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~------~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.+.++++.. ....+++.||+.....+.|........ ..++..+.+.++|+..++.+.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 4566655432 112356677777776665544333232 2346789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVYAI 292 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai 292 (303)
+....|.+++-|.---
T Consensus 177 i~~~~w~Kl~~N~~in 192 (307)
T COG1893 177 ILAAIWRKLVVNAAIN 192 (307)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999999996433
No 17
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=5.3e-16 Score=143.93 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=122.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|+||+|||+|+||.+++..|.++ |.+.+ ++|.+|+|+++. .+. +. ..
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~---------l~----------------~~----- 48 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQ---------LY----------------DK----- 48 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHH---------HH----------------HH-----
Confidence 57999999999999999999987 63322 689999987532 111 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+ ....++.+..++++++|+||+|||++.+.++++++.+++.+ ++.|||+++|++
T Consensus 49 ----~-------------------~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 49 ----Y-------------------PTVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred ----c-------------------CCeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 0 02344567777788999999999999999999999998876 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
.+ .|++.++. . -+++.+||++..++.|.+.+... ..++++.+.+..+|+..|-..+++++.
T Consensus 103 ~~------------~l~~~~~~--~-~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~ 164 (277)
T PRK06928 103 LD------------DLLEITPG--L-QVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREEN 164 (277)
T ss_pred HH------------HHHHHcCC--C-CEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhh
Confidence 75 36777753 1 37899999999999996543221 224557889999999999888877653
No 18
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.70 E-value=8e-17 Score=151.40 Aligned_cols=181 Identities=12% Similarity=0.041 Sum_probs=127.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhh-hHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE-HLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|||+|+|+|+||+.+|..|++. | ++|++++|+++++++++++ ++ .+...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~~Gl-------------------~i~~~---- 52 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQAGGL-------------------TLVEQ---- 52 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhcCCe-------------------EEeeC----
Confidence 48999999999999999999999 8 8999999988777765432 21 11100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++ .. . .++...++ +....+|+||+|||++++.++++++++++.+ ++.|++++||+.
T Consensus 53 g~-~~------------~------~~~~~~~~--~~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv~ 108 (305)
T PRK05708 53 GQ-AS------------L------YAIPAETA--DAAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGLG 108 (305)
T ss_pred Cc-ce------------e------eccCCCCc--ccccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCCC
Confidence 00 00 0 01111111 1235789999999999999999999999988 899999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCcc------EEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEec
Q 022050 202 AELEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~------~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
.. +.+.++++....- .+...+|+...+.+.+. +.++ .+.+..+.+.++|...++.+..+
T Consensus 109 ~~-----------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~~~~ 174 (305)
T PRK05708 109 SQ-----------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPHEWT 174 (305)
T ss_pred CH-----------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCCccC
Confidence 86 4566777642100 12233555554433332 1222 22345688899999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 022050 275 GDLVTHEVMGGLKNVY 290 (303)
Q Consensus 275 ~Di~g~e~~~~lkNv~ 290 (303)
+|+.+..|.|.+-|.-
T Consensus 175 ~di~~~~W~Kl~~N~~ 190 (305)
T PRK05708 175 VDILTRLWRKLALNCA 190 (305)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999999974
No 19
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.69 E-value=3e-16 Score=147.78 Aligned_cols=187 Identities=19% Similarity=0.168 Sum_probs=130.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|+||+.+|..|+++ | ++|++|.|++. +.++.+++ .+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g~-------------------~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENGL-------------------QVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCCe-------------------EEEeCC---
Confidence 348999999999999999999999 8 99999999863 33222211 111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++... .+..++++.+ ....+|+||+|||+.++.++++.+.+++.+ +++|++++||++
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1244555544 467899999999999999999999999887 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCc------cEEEEeCCCcHHHHhccCceEEEEeC-C-----hhhHHHHHHHhcCCCe
Q 022050 202 AELEAVPRIITPTQMINRATGVPIE------NILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~------~~~v~~GP~~a~ev~~g~~~~~~~~~-~-----~~~~~~i~~lf~~~g~ 269 (303)
.. +.+.++++.... ..+...+|++....+.|...+....+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 75 456777754210 01234566665544444322222222 2 3456788999999999
Q ss_pred EEEecCChhHHHHHHHHHHHHHH
Q 022050 270 TVWDNGDLVTHEVMGGLKNVYAI 292 (303)
Q Consensus 270 ~~~~~~Di~g~e~~~~lkNv~Ai 292 (303)
.+..++|+....|.|.+-|+.--
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n 202 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYN 202 (313)
T ss_pred CceeCchHHHHHHhHhheecchh
Confidence 99999999999999999996433
No 20
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=138.22 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=120.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC-CchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||+|.||.+++..++.+ |.... .++.+++|+ +++.+++ ..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~~--------------------------~~----- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQL--------------------------QA----- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHHH--------------------------HH-----
Confidence 37899999999999999999887 52110 136677764 3333211 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
. .++..++|++++++++|+||++||++..+++++++.++++ +++|||+++|++
T Consensus 51 ---~--------------------~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---R--------------------YNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---H--------------------cCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 0 0244556787888899999999999999999999998765 468999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
.+ .|++.++.. ...++.|||++.+++.+.+...+. ..+++..+.++++|+.-|-..++.++.
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~ 166 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEE 166 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 75 477777642 245689999999999998766543 345677899999999999888776543
No 21
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=4.8e-15 Score=137.48 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=120.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|||+|||+|+||.+|+..|.++ |.+.+ ++|++|+|+.+ +++.+. ..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~l~-------------------------~~----- 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQELH-------------------------QK----- 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHHHH-------------------------Hh-----
Confidence 37999999999999999999988 63333 68999999763 222110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++..+.++.+++++||+||++||++...++++++.+.+.+ +++|||+++|+.
T Consensus 51 ------------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~ 103 (279)
T PRK07679 51 ------------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVS 103 (279)
T ss_pred ------------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 02445567777788999999999999999999999988876 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
.+ .+.+.++.. ..+++.+||++.....+.+.+ +.+. +.+..+.++.+|+.-|-.+++.++.+-
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~mPn~~~~~~~~~t~~-~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~ 168 (279)
T PRK07679 104 TH------------SIRNLLQKD--VPIIRAMPNTSAAILKSATAI-SPSKHATAEHIQTAKALFETIGLVSVVEEEDMH 168 (279)
T ss_pred HH------------HHHHHcCCC--CeEEEECCCHHHHHhcccEEE-eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh
Confidence 75 355555432 246899999998888775422 2222 345778999999998987777666443
No 22
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.66 E-value=3.4e-15 Score=137.33 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=116.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||++++..|.++ |.+.+ .++++++|++++.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~~-------------------------------------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKNT-------------------------------------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhcC--------------------------------------
Confidence 8999999999999999999987 64332 4588887765321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
......++.++++++|+||+|||++.++++++++.+++.+ ..|||.++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 1123345666778999999999999999999999988764 5789999999864
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
.+++.++.. ...++.+||++..+..+.+.+... ..+.+..+.+.++|+..|...++.++.
T Consensus 97 ------------~l~~~~~~~--~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~ 157 (260)
T PTZ00431 97 ------------TLEEMVGVE--AKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKD 157 (260)
T ss_pred ------------HHHHHcCCC--CeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHH
Confidence 466777532 246799999999888875433221 123457899999999999999987663
No 23
>PRK07680 late competence protein ComER; Validated
Probab=99.64 E-value=7e-15 Score=135.88 Aligned_cols=161 Identities=11% Similarity=0.177 Sum_probs=120.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||++++..|.++ |.+.+ .+|.+|+|++++.+++. . ..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~~~---------~-------------~~--------- 47 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYHIK---------E-------------RY--------- 47 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHHHH---------H-------------Hc---------
Confidence 6899999999999999999988 73322 47999999986543210 0 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
..+..+.+..+++.++|+||++||++.+.++++++.+++.+ +++|+++++|+...
T Consensus 48 ----------------------~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 48 ----------------------PGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred ----------------------CCeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 02445567777788999999999999999999999998876 68999999998653
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
.+.+.++. ..++.+|+++.....|..... .+ .+.+..+.+.++|+..|...++.+|+.-
T Consensus 103 ------------~L~~~~~~----~~~r~~p~~~~~~~~G~t~~~-~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~ 163 (273)
T PRK07680 103 ------------QLETLVPC----QVARIIPSITNRALSGASLFT-FGSRCSEEDQQKLERLFSNISTPLVIEEDITR 163 (273)
T ss_pred ------------HHHHHcCC----CEEEECCChHHHHhhccEEEe-eCCCCCHHHHHHHHHHHHcCCCEEEEChHhcc
Confidence 46666652 256788999877667754322 22 2345678999999999988888887433
No 24
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.63 E-value=2e-14 Score=131.91 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=115.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|+||.+|+..|.++ |++.+ .+|++| +|++++.+.+ ..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~~--------------------------~~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDVF--------------------------QS------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHHH--------------------------HH------
Confidence 7999999999999999999998 72222 388888 8887654321 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++..++++.++++++|+||+++|++.++++++++.+.+.+ +++|||.++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02445567777788999999999999999999999887776 7889999999866
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
+ .+.+.++.. + .++.+|+++..+..+...++.. ..+.+..+.++.+|+.-|-..+.++
T Consensus 101 ~------------~l~~~~~~~--~-vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e 159 (266)
T PLN02688 101 A------------DLQEWAGGR--R-VVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDE 159 (266)
T ss_pred H------------HHHHHcCCC--C-EEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence 4 355666532 2 4568999999887765333222 2355678999999998887334433
No 25
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.62 E-value=1.2e-14 Score=141.91 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=135.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..|+++ | ++|++|++++++++.++.. .++.+.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l~~g-----------------~~~~~e~~l~~---- 53 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKLNKG-----------------KSPIYEPGLDE---- 53 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHhhcC-----------------CCCCCCCCHHH----
Confidence 6899999999999999999999 9 9999999999887764421 12233333210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
.+.+... ..++++++++.++++++|+||++||.. ++.++++.+.+.+++ +++|
T Consensus 54 -------~~~~~~~-------~g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 54 -------LLAKALA-------AGRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred -------HHHHhhh-------cCCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 0000000 013678888888889999999999975 478888888888876 6666
Q ss_pred EEeeccCccccccccccCCH-HHHHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhcCC
Q 022050 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~-~~~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~~~ 267 (303)
+ ..+++.+.+ ...+ .+++++..|.. ...+.+..+|.++.+... ..+..++.+.+.+..+.++++|+.-
T Consensus 117 i-~~STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 V-LESTVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred E-EeCcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 5 455777652 2222 23333322321 123568899999875432 2233445566777888899998876
Q ss_pred C-eEEEecCChhHHHHHHHHHHHH
Q 022050 268 H-FTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 268 g-~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+ ..++...|+...|.+|.+.|.|
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~ 214 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTF 214 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHH
Confidence 5 3677788999999999999998
No 26
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=3.6e-14 Score=130.32 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=114.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|+||++++..|.++ |. .. ++|.+|+|++++.+++..+ +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~~-~~v~v~~r~~~~~~~~~~~---------------------~--------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-PA-KDIIVSDPSPEKRAALAEE---------------------Y--------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-Cc-ceEEEEcCCHHHHHHHHHh---------------------c---------
Confidence 58999999999999999999987 62 21 5799999998765431100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
++.++.+..+++.++|+||++||++.++++++++.+++ + ++|+|+++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 13344566677789999999999999999999998876 3 589999999865
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEec
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
+ .+++.++... -.++..|+++..+..+... ++.+ .+.+..+.++.+|+.-|..+++.
T Consensus 100 ~------------~l~~~~~~~~--~iv~~~P~~p~~~~~~~~~-i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 100 A------------RLERLLGADL--PVVRAMPNTPALVGAGMTA-LTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred H------------HHHHhcCCCC--cEEEecCCchHHHcCceEE-EecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3 4666665321 3567899999877776432 2222 34567789999999999877665
No 27
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.60 E-value=1.4e-13 Score=123.35 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=120.3
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+||| +|+||+++|..|+++ | ++|++|+|++++++.++.+.+ ..+...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~~----- 51 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGHG----- 51 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhcccc-----
Confidence 7999997 899999999999999 8 899999999887654332110 001000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
|+. .++.. ++..++++++|+||+|||++..+++++++.+.+. +++||+++||+..
T Consensus 52 ------------g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 52 ------------GSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred ------------CCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 000 01223 3556778899999999999999999999887665 4789999999986
Q ss_pred cc-ccc----cccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCc----eEEEEeCC-hhhHHHHHHHhcCC-CeEE
Q 022050 203 EL-EAV----PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (303)
Q Consensus 203 ~~-~~~----~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~----~~~~~~~~-~~~~~~i~~lf~~~-g~~~ 271 (303)
.. ... +...+.++.++++++.. .-++...|+++.++..+.. ..+++++| ++..+.+.++.... ||.+
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 20 000 11234467788888631 2367788888877665421 11234554 45678889999887 9998
Q ss_pred EecC
Q 022050 272 WDNG 275 (303)
Q Consensus 272 ~~~~ 275 (303)
+..-
T Consensus 185 vd~G 188 (219)
T TIGR01915 185 LDAG 188 (219)
T ss_pred ccCC
Confidence 6544
No 28
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.58 E-value=3e-15 Score=130.67 Aligned_cols=174 Identities=24% Similarity=0.357 Sum_probs=101.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|||+|.||..||..++.+ | ++|++||++++.+++... . +... ++...+.. .+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~----i~~~---l~~~~~~~-~~~~~------- 58 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-R----IERL---LDRLVRKG-RLSQE------- 58 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-H----HHHH---HHHHHHTT-TTTHH-------
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-H----HHHH---Hhhhhhhc-cchhh-------
Confidence 799999999999999999999 9 999999999988765432 1 1110 11111111 01100
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+. +..+.++.+++|++++. +||+||+|+|+. .+++++++|..++++ ++++.|+++++..
T Consensus 59 -----~~----------~~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 59 -----EA----------DAALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp -----HH----------HHHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred -----hh----------hhhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 00 00013789999999876 999999999997 589999999999988 8999999999887
Q ss_pred ccccccccCCHHHHHHhHhCCCCc--c-EEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIE--N-ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~--~-~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.+ ......|++++.-||..|.+ + +.++.||.+ +.+..+.+.+++...|..+....|
T Consensus 120 ~~l-a~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T----------------~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 SEL-AAALSRPERFIGMHFFNPPHLMPLVEVVPGPKT----------------SPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp HHH-HTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-----------------HHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHH-HhccCcCceEEEEecccccccCceEEEeCCCCC----------------CHHHHHHHHHHHHHCCCEEEEecC
Confidence 631 11122333333333322211 1 223333333 334556666777766776665444
No 29
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.57 E-value=1.2e-14 Score=134.27 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhh
Q 022050 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (303)
Q Consensus 53 ~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 132 (303)
+||+.+|..|+++ | ++|++++|+ +++++++++++ .+.... ++...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~---~~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLG---GEFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecC---CcEEE------
Confidence 5899999999999 9 999999997 55665543332 111100 00000
Q ss_pred hccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCC
Q 022050 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~ 212 (303)
.++.+++++++ ...+|+||++||+++++++++.+++++.+ +++|++++||++..
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 12345566655 67899999999999999999999999987 79999999999875
Q ss_pred HHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHHHHHHH
Q 022050 213 PTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (303)
Q Consensus 213 ~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~~l 286 (303)
+.+.+.++.+. ...+.+.+|++....+.+...+.......+..+.+.++|...++.+..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 45666665321 1123456777665554443221111112245688999999999999999999999999999
Q ss_pred HHH-HHHHHHHHh
Q 022050 287 KNV-YAIGAGTIY 298 (303)
Q Consensus 287 kNv-~Ai~~G~~~ 298 (303)
.|+ +...+++++
T Consensus 178 ~N~~~n~l~al~~ 190 (293)
T TIGR00745 178 VNAAINPLTALLD 190 (293)
T ss_pred heechhHHHHHHC
Confidence 998 677777665
No 30
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.57 E-value=4.5e-14 Score=131.63 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=133.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..||+|||+|.||++||..|+.+ | ++|++||++++.+++..+. +++....+........ ....
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----i~~~~~~l~~~~~~g~-~~~~----- 65 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAMEL-----IESGPYGLRNLVEKGK-MSED----- 65 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHhhhhhHHHHHHcCC-CCHH-----
Confidence 36899999999999999999999 8 8999999999887643211 1110000000000000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. +..+.++.++++. +++++||+||+|+|++. ++++++++.+++++ +++++|+++|+
T Consensus 66 --~~---------------~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~ 124 (291)
T PRK06035 66 --EA---------------KAIMARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGI 124 (291)
T ss_pred --HH---------------HHHHhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCC
Confidence 00 0001256677777 46899999999999985 78999999999887 78999999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
... .+.+.+..+. + .+...|..+..+... ..++.+ .+.+..+.+..++...|..+....|.-
T Consensus 125 ~~~------------~la~~~~~~~-r-~ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 125 MIA------------EIATALERKD-R-FIGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred CHH------------HHHhhcCCcc-c-EEEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 764 2444443321 1 223333333322222 122222 355677888899998898888878999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022050 279 THEVMGGLKNVYAIGAGTIY 298 (303)
Q Consensus 279 g~e~~~~lkNv~Ai~~G~~~ 298 (303)
|.-....+-|.+.-|.-+++
T Consensus 189 gfv~nRl~~~~~~ea~~~~~ 208 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSFE 208 (291)
T ss_pred CeeHHHHHHHHHHHHHHHHH
Confidence 99999999999988886665
No 31
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=2.6e-13 Score=127.47 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=126.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||++||..|+.+ | ++|++|+++++.+++++.. +... .....+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~---------~~~~~~~------ 57 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERA---------LGVYAPL------ 57 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---------HHHhhhc------
Confidence 57899999999999999999998 8 8999999999887654421 1000 0000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
... +..+.++.+++|+.+++++||+||+|||++. +.++++++.+++++ +++|+|.++|+
T Consensus 58 --~~~--------------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg~ 118 (311)
T PRK06130 58 --GIA--------------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSGL 118 (311)
T ss_pred --ccH--------------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCCC
Confidence 000 0001246677888888899999999999974 78899999988877 67888999987
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
... .+.+.++.+. -.+...|+.+..... ...++.+ .+.+..+.+.++|+.-|..++.. .|.
T Consensus 119 ~~~------------~l~~~~~~~~--~~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~ 182 (311)
T PRK06130 119 PIT------------AIAQAVTRPE--RFVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI 182 (311)
T ss_pred CHH------------HHHhhcCCcc--cEEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 653 3555554321 234556666654332 2222222 24567899999999989876655 577
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAIGAGT 296 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~ 296 (303)
.|.-+--.+--.++=+.-+
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l 201 (311)
T PRK06130 183 PGFIANRIQHALAREAISL 201 (311)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 7774444444444433333
No 32
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.54 E-value=5.1e-14 Score=109.60 Aligned_cols=94 Identities=27% Similarity=0.320 Sum_probs=72.9
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
||+|||+|+||.+++..|..+ |. . +++|.++ +|++++++++.. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~-~~~v~~~~~r~~~~~~~~~~-------------------------~------- 45 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-K-PHEVIIVSSRSPEKAAELAK-------------------------E------- 45 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS---GGEEEEEEESSHHHHHHHHH-------------------------H-------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-C-ceeEEeeccCcHHHHHHHHH-------------------------h-------
Confidence 799999999999999999998 74 3 3799966 999887654211 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+..++. +..++++++|+||+|||++.+.++++++ +...+ ++++||+++|
T Consensus 46 ----------------------~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 46 ----------------------YGVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp ----------------------CTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred ----------------------hccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 0233333 6788899999999999999999999999 65666 7899999987
No 33
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=2.4e-13 Score=129.76 Aligned_cols=194 Identities=18% Similarity=0.120 Sum_probs=139.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|+|+|.+|...|..||+. | |+|+.+|.++++++.+|.. ..|.|.++++..+.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~ln~g-----------------~~PI~EpgLe~ll~~ 57 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVELLNKG-----------------ISPIYEPGLEELLKE 57 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHhCC-----------------CCCCcCccHHHHHHh
Confidence 8999999999999999999999 9 9999999999999876532 367888887533332
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
... -.++++|+|.+++++++|++|||||.. ++++++++|.++++. .+ +
T Consensus 58 ~~~------------------~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 58 NLA------------------SGRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ccc------------------cCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 110 024899999999999999999999652 688899999998875 33 4
Q ss_pred EEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeCC-hhhHHHHHHHhcCC-
Q 022050 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGA-EKWRKPLAKFLRRP- 267 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~-~~~~~~i~~lf~~~- 267 (303)
|..-+.+.+. ++..+.+.+.+.... ..+.+++.|.|-+|... -.|..++++.. ....+.+.+++...
T Consensus 116 vV~KSTVPvG-----t~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 116 VVIKSTVPVG-----TTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFL 188 (414)
T ss_pred EEEcCCCCCC-----chHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhh
Confidence 4444455554 344444444443322 24789999999887542 22555666543 34567777777542
Q ss_pred --CeEEEecCChhHHHHHHHHHHHH
Q 022050 268 --HFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 268 --g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
..+ ..-.|+..+|+-+..-|.|
T Consensus 189 ~~~~p-~l~t~~~~AE~IKyaaNaf 212 (414)
T COG1004 189 RQDVP-ILFTDLREAELIKYAANAF 212 (414)
T ss_pred hcCCC-EEEecchHHHHHHHHHHHH
Confidence 333 3568899999999999976
No 34
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.53 E-value=3.8e-13 Score=124.78 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=131.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhc-ccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRC-AYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~l~~~~~~~ 121 (303)
++||+|||+|.||.++|..++.+ | ++|++||++++.+++... .+++. +.+..+.. .......
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~-----~i~~~---l~~~~~~g~~~~~~~~--- 65 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLA-----TITKS---LDRLVKKGKMTEADKE--- 65 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHH-----HHHHH---HHHHHHcCCCCHHHHH---
Confidence 46899999999999999999999 8 899999999987754221 11110 11111110 0000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
....++++++|.++ +++||+||+|+|++. +.+++++|.+++++ +++|+|.++|
T Consensus 66 ---------------------~~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts~ 120 (282)
T PRK05808 66 ---------------------AALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTSS 120 (282)
T ss_pred ---------------------HHHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00125777888764 789999999999864 47999999999988 7888899999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+..+ .+.+.++.+. -.+...|+.+..+..+. .++. ..+.+..+.+..+|...|..+....|.
T Consensus 121 ~~~~------------~la~~~~~~~--r~ig~h~~~P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~ 184 (282)
T PRK05808 121 LSIT------------ELAAATKRPD--KVIGMHFFNPVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184 (282)
T ss_pred CCHH------------HHHHhhCCCc--ceEEeeccCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 8764 3666665442 25667788876665443 2232 245678889999999988888776777
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAIGAGT 296 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~ 296 (303)
.|.-+--.+-..+.-++=+
T Consensus 185 ~g~i~~Ri~~~~~~ea~~~ 203 (282)
T PRK05808 185 PGFVVNRILIPMINEAIFV 203 (282)
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 6666555555554444433
No 35
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.52 E-value=1.9e-13 Score=129.37 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=101.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||+.||..|+.+ | ++|++||++++.+++... . +... +..+.+..
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~~-~----i~~~---~~~~~~~~---------- 61 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALRA-N----VANA---WPALERQG---------- 61 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcC----------
Confidence 357899999999999999999999 9 999999999987654321 1 1110 01010000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+.++ ....++.+++++++++.+||+|+++||+. .++++++++..++++ +++|.|+|++
T Consensus 62 ----~~~~-------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~ 121 (321)
T PRK07066 62 ----LAPG-------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSG 121 (321)
T ss_pred ----CChh-------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCc
Confidence 0000 00126778889988999999999999997 478899999999998 8899999998
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHH
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASE 239 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~e 239 (303)
+..+.+ ......|++++.-||.+|.+ -+.++.||.|..+
T Consensus 122 l~~s~l-a~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e 163 (321)
T PRK07066 122 LLPTDF-YARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPE 163 (321)
T ss_pred cCHHHH-HHhcCCcccEEEEecCCccccCceEEEeCCCCCCHH
Confidence 876421 11233444444444433322 1345555555443
No 36
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.52 E-value=1.2e-12 Score=121.98 Aligned_cols=200 Identities=18% Similarity=0.218 Sum_probs=124.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.++|..++.+ | ++|++|+++++.+++++.. +..... .+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-~~~~~~-------------~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-IAKLAD-------------RYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-HHHHHH-------------HHHHcC-----
Confidence 47999999999999999999999 8 8999999999877764421 000000 011100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.+++.. +..+.++++++|+++++++||+||+|+|++ .++++++++.+++++ +++|++.++++
T Consensus 58 --~~~~~~~~---------~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEAPA---------EAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhhhH---------HHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 00000000 000136788899998899999999999987 689999999998887 78877877666
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEe-cCCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD-NGDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~-~~Di 277 (303)
..+ + +.+.+..+. ++.. . ++...........++. ..+.+..+.+.+++...|..+.. ..|.
T Consensus 124 ~~~-----------~-~~~~~~~~~-r~vg-~--Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 LPS-----------Q-FAEATGRPE-KFLA-L--HFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred CHH-----------H-HHhhcCCcc-cEEE-E--cCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 543 2 334443332 2211 1 2211122222223332 23556778888888888876654 3576
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAIGAGTI 297 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~~ 297 (303)
.|--+--.+-.++.-|+-++
T Consensus 188 pgfi~nRi~~~~~~ea~~l~ 207 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALW 207 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHH
Confidence 66666666666665555443
No 37
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.50 E-value=1.2e-13 Score=129.36 Aligned_cols=157 Identities=23% Similarity=0.290 Sum_probs=111.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||+.||..+|.. | ++|+++|++++.+++.... +... +++..+.. .+...
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~k~~~~g-~l~~~----- 62 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALAY-----IEKN---LEKLVEKG-KLTEE----- 62 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHHH-----HHHH---HHHHHhcC-CCChh-----
Confidence 58999999999999999999998 8 8999999998877664421 1111 12211111 11110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. + +..+..++.++++. ++.+||+||+||++. .++++++++..++++ ++++.|+|+++
T Consensus 63 --~--~-------------~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSsl 121 (307)
T COG1250 63 --E--A-------------DAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSSL 121 (307)
T ss_pred --h--H-------------HHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCCC
Confidence 0 0 11224677788876 689999999999997 589999999999998 89999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCcc---EEEEeCCCcHHHHh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIY 241 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~v~~GP~~a~ev~ 241 (303)
+++.+. ....+|++++.-||.+|.+. +.++.|..|..++.
T Consensus 122 ~it~ia-~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~ 164 (307)
T COG1250 122 SITELA-EALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETV 164 (307)
T ss_pred CHHHHH-HHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHH
Confidence 986432 23467778787777666422 46777777655544
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.47 E-value=2.1e-12 Score=129.15 Aligned_cols=185 Identities=18% Similarity=0.178 Sum_probs=122.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.||++||..|+.+ | ++|++||++++.++++.. .+.... +...++...
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~~-----~~~~~~-------~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIGE-----VLANAE-------RAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH-------HHHhhhccc-----
Confidence 37999999999999999999999 9 899999999987764321 111000 000011110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+. ...++.+++++++++++||+||+++|++. ++.+++++..++++ +++|.|.++|+
T Consensus 61 --~~~----------------~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP----------------PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh----------------hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 00146788899888999999999999985 77788999888887 78889999988
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
..+ .+.+.+..+. ..++..|+.+.... ....++.+. +.+..+.+..+|+..|-.++.. .++
T Consensus 120 ~~s------------~l~~~~~~~~--r~~~~hP~nP~~~~--~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~ 183 (495)
T PRK07531 120 LPS------------DLQEGMTHPE--RLFVAHPYNPVYLL--PLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEI 183 (495)
T ss_pred CHH------------HHHhhcCCcc--eEEEEecCCCcccC--ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCC
Confidence 764 2455554332 35677777755322 112222222 3567889999999888777655 465
Q ss_pred hHHHHHHHHH
Q 022050 278 VTHEVMGGLK 287 (303)
Q Consensus 278 ~g~e~~~~lk 287 (303)
.|.-....+-
T Consensus 184 ~gfi~nrl~~ 193 (495)
T PRK07531 184 DAFVGDRLLE 193 (495)
T ss_pred cchhHHHHHH
Confidence 5555444433
No 39
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.45 E-value=8.4e-13 Score=124.69 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=115.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC-chhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||+|+||.++|..|..+ | ++|+++++.. +..++ ...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~--------------------------a~~------ 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKK--------------------------ATE------ 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHH--------------------------HHH------
Confidence 7899999999999999999998 8 7887766543 22211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+.. .++.+++++||+|+++||++ +...+++++.+.+++ + .+||+..|+.
T Consensus 46 -----------------------~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~~ 97 (314)
T TIGR00465 46 -----------------------DGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGFN 97 (314)
T ss_pred -----------------------CCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCcc
Confidence 02333 34677889999999999999 777778889988876 4 4899999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-H------hccCceEEEEeC--ChhhHHHHHHHhcCCCeE--
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARICG--AEKWRKPLAKFLRRPHFT-- 270 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v------~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~-- 270 (303)
.. .+...++.. .-+++.+||++.. + +.|.++.+.... +.+..+.+..+|..-|..
T Consensus 98 i~------------~~~~~~~~~--~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~ 163 (314)
T TIGR00465 98 IH------------FVQIVPPKD--VDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRA 163 (314)
T ss_pred Hh------------hccccCCCC--CcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 75 244455432 2478999999998 4 888776653432 345667788888877665
Q ss_pred -----E---EecCChhHHH--HHHHH
Q 022050 271 -----V---WDNGDLVTHE--VMGGL 286 (303)
Q Consensus 271 -----~---~~~~Di~g~e--~~~~l 286 (303)
. ++.+|..+.. +||..
T Consensus 164 ~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 164 GVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred ceeechhHhhhhHHhcCcchhHHhHH
Confidence 3 5667777665 45544
No 40
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.45 E-value=5.3e-12 Score=117.69 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=115.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.++|..|+.+ | ++|++|+++++.++++... +.+. +.++.... .++..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~---~~~~~~~g-~~~~~----- 63 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLAT-----INGN---LARQVAKG-KISEE----- 63 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---HHHHHHcC-CCCHH-----
Confidence 47899999999999999999999 8 8999999999877653211 1110 00000000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. +..+.+++++++++ ++++||+||+|||+. .++.+++++.+++++ +++++|.++++
T Consensus 64 --~~---------------~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 64 --AR---------------AAALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred --HH---------------HHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 00 00012577778875 578999999999985 578889999999887 78888999887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeC-CCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGG-PNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~G-P~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
... .+.+.+..+...+.+... |.. +..+ ..++. ..+.+..+.+..+|..-|..+++..|.
T Consensus 123 ~~s------------~la~~~~~~~r~~g~h~~~p~~---~~~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~ 185 (292)
T PRK07530 123 SIT------------RLASATDRPERFIGIHFMNPVP---VMKL--VELIRGIATDEATFEAAKEFVTKLGKTITVAEDF 185 (292)
T ss_pred CHH------------HHHhhcCCcccEEEeeccCCcc---cCce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 654 244444322111111111 111 1111 12222 345677888999998888877777776
Q ss_pred hHHHHHHHH
Q 022050 278 VTHEVMGGL 286 (303)
Q Consensus 278 ~g~e~~~~l 286 (303)
-|--.--.+
T Consensus 186 pg~i~nRl~ 194 (292)
T PRK07530 186 PAFIVNRIL 194 (292)
T ss_pred CChHHHHHH
Confidence 654443333
No 41
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.45 E-value=6.5e-13 Score=138.01 Aligned_cols=156 Identities=13% Similarity=0.187 Sum_probs=106.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..||+|||+|.||..||..+|.+ | ++|+++|++++.+++... ++...+ .+..+... +...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~g~-~~~~----- 372 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLL-------NKQVERGK-IDGA----- 372 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CChh-----
Confidence 47899999999999999999999 9 999999999988765331 111111 11111111 1100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+. +..+.+++.++|++ ++++||+||+|||+. .+++++.+|.+++++ ++++.|+|+++
T Consensus 373 -------~~----------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 431 (715)
T PRK11730 373 -------KM----------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTSTI 431 (715)
T ss_pred -------hH----------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 00 01124788999985 579999999999997 589999999999998 89999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHH
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEI 240 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev 240 (303)
+.+.+ ......|++++.-||..|.+ -+.++.|+.|..++
T Consensus 432 ~i~~l-a~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~ 473 (715)
T PRK11730 432 SISLL-AKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDET 473 (715)
T ss_pred CHHHH-HhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHH
Confidence 87632 11234455566655544422 14566666665443
No 42
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.44 E-value=3.7e-12 Score=118.95 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=120.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||.+||..|+.+ | ++|++|+++++.+++..+ . +... +.++.+.....+..
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~----~~~~---~~~~~~~g~~~~~~----- 64 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-S----ISSS---LARLVKKGKMSQEE----- 64 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcCCCCHHH-----
Confidence 46899999999999999999998 8 899999999987654321 1 1110 01111100000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--chhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. +..+..+.++++.+ ++++||+||+||| +..+..+++++.+++++ +++|+|.++|+
T Consensus 65 ---~---------------~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~i 122 (295)
T PLN02545 65 ---A---------------DATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSSI 122 (295)
T ss_pred ---H---------------HHHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 00011355666664 6799999999999 66788899999998887 78888999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
... .+.+.+..+. ++. ...|..+... +....++.+ .+.+..+.++.+|..-|..+....|..
T Consensus 123 ~~~------------~l~~~~~~~~-r~~-g~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 123 SIT------------RLASATQRPQ-QVI-GMHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred CHH------------HHHhhcCCCc-ceE-EEeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 764 2445444321 222 2222222222 122223322 356678999999999898888777776
Q ss_pred HHHHHHHHHHHHHHH
Q 022050 279 THEVMGGLKNVYAIG 293 (303)
Q Consensus 279 g~e~~~~lkNv~Ai~ 293 (303)
|.-..-.+-.++.-+
T Consensus 187 g~i~nri~~~~~~ea 201 (295)
T PLN02545 187 GFIVNRILMPMINEA 201 (295)
T ss_pred cHHHHHHHHHHHHHH
Confidence 655544444444333
No 43
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.43 E-value=1.2e-12 Score=135.80 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=106.4
Q ss_pred CCceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
..+||+|||+|.||+.||..++ .+ | ++|+++|++++.+++... .+...+ .+..+....-+.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~~~~~~~---- 364 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKLL-------DKGVKRRHMTPA---- 364 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCCCCHH----
Confidence 3478999999999999999998 47 8 899999999987765331 111111 111111100000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
+ + +..+.+++.++|++ ++++||+||+|||+. .+++++.+|.+++++ ++++.|+|+
T Consensus 365 ---------~--~--------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS 421 (699)
T TIGR02440 365 ---------E--R--------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTS 421 (699)
T ss_pred ---------H--H--------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCC
Confidence 0 0 01123788899985 689999999999997 589999999999998 899999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+++.+.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 422 ~l~i~~l-a~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~ 466 (699)
T TIGR02440 422 SLPIGQI-AAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTI 466 (699)
T ss_pred CCCHHHH-HHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHH
Confidence 9988642 11234555666656544432 245667777655443
No 44
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.41 E-value=7.2e-12 Score=116.66 Aligned_cols=187 Identities=18% Similarity=0.123 Sum_probs=116.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.||..+|..|+++ | ++|++||++++.++++..+. ....... .+.. .....
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~~-~~~~~~~-------~~~g-~~~~~------ 60 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQEI-ASIFEQG-------VARG-KLTEA------ 60 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHHH-HHHHHHH-------HHcC-CCCHH------
Confidence 6899999999999999999999 8 89999999999887654321 1111100 0000 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.. +..+.+++.++++++++++||+||+|+|+.. ++.++.++.+++++ ++++++.++++.
T Consensus 61 -~~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 61 -AR---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred -HH---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 00 0001257788899888999999999999985 67788999988887 777778887776
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEE-EEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~-v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
++ + +.+.+..+..... ....|- ..+....++.+ .+.+..+++..++..-+..++...|..
T Consensus 122 ~~-----------~-l~~~~~~~~r~~g~h~~~Pv-----~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 122 PT-----------E-IASFTKRPERVIAMHFFNPV-----HKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred HH-----------H-HHhhcCCcccEEEEecCCCc-----ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 64 2 4444432211111 111222 11222222222 256678888889988888777667755
Q ss_pred HHHHHHHHH
Q 022050 279 THEVMGGLK 287 (303)
Q Consensus 279 g~e~~~~lk 287 (303)
|.-+--.+-
T Consensus 185 Gf~~nRl~~ 193 (288)
T PRK09260 185 GFVTSRISA 193 (288)
T ss_pred cHHHHHHHH
Confidence 555444443
No 45
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.41 E-value=9.3e-12 Score=116.66 Aligned_cols=180 Identities=13% Similarity=0.047 Sum_probs=113.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||.++|..|+++ | ++|.+|+|++++++++.+. +
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~~~------------------------g------- 43 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMKED------------------------R------- 43 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHc------------------------C-------
Confidence 6899999999999999999999 8 9999999999876542210 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCH---HHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNL---QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~---~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.....++ .+.+..+|+||++||+..++++++++.+.+++ +.+||..+++.
T Consensus 44 ------------------------~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~ 96 (298)
T TIGR00872 44 ------------------------TTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSY 96 (298)
T ss_pred ------------------------CcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCC
Confidence 0011223 33346789999999999999999999999887 78888888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCe---EEEecC
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNG 275 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~---~~~~~~ 275 (303)
...+ .+...+.-... +..+..|-. +.....| + .+.++++.+..+.++.+|+.-+- .++...
T Consensus 97 ~~~t---------~~~~~~~~~~g---~~~vda~vsGg~~~a~~G-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G 162 (298)
T TIGR00872 97 YKDS---------LRRYKLLKEKG---IHLLDCGTSGGVWGRERG-Y-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCG 162 (298)
T ss_pred cccH---------HHHHHHHHhcC---CeEEecCCCCCHHHHhcC-C-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEEC
Confidence 5432 11122211111 112222222 1111234 3 23456676667777777664332 234445
Q ss_pred ChhHHHHHHHHHHH--HHHHHHHHhhhc
Q 022050 276 DLVTHEVMGGLKNV--YAIGAGTIYFLV 301 (303)
Q Consensus 276 Di~g~e~~~~lkNv--~Ai~~G~~~gl~ 301 (303)
+.=.....+.+.|. ++..+.+++|+.
T Consensus 163 ~~G~~~~~K~~~n~l~~~~~~~~aE~~~ 190 (298)
T TIGR00872 163 PCGSGHFVKMVHNGIEYGMMAAIAEGFE 190 (298)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455788888885 444566666653
No 46
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.41 E-value=2.2e-12 Score=134.03 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=111.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..||..++.+ | ++|+++|++++.+++... .+...+. +..+... +...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~-------~~~~~g~-~~~~---- 372 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLN-------KQVERGR-ITPA---- 372 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHH-------HHHHcCC-CChh----
Confidence 457899999999999999999999 9 999999999988775431 1111111 1111110 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+. +..+.+++.++|++ ++.+||+||+||++. .+++++.+|.+++++ ++++.|+|++
T Consensus 373 --------~~----------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS~ 430 (714)
T TIGR02437 373 --------KM----------AGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTST 430 (714)
T ss_pred --------hH----------HHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 01123788889885 579999999999997 589999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+..+.+ ......|++++.-||..|.+ -+.++.|+.|..++.
T Consensus 431 l~i~~i-a~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~ 474 (714)
T TIGR02437 431 ISISLL-AKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETI 474 (714)
T ss_pred CCHHHH-HhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHH
Confidence 998642 12345667777777755532 246777877766544
No 47
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.41 E-value=8.7e-12 Score=116.36 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++.||+|||+|.||..||..++.+ | ++|++||++++.+++... ++.+.+. ++.+... +...
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~~-------~~~~~g~-~~~~---- 64 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSLE-------RAVSRGK-LTER---- 64 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHH-------HHHhccc-CChh----
Confidence 346899999999999999999999 9 999999999998775331 1111111 1111110 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHh-hccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l-~~~~~~~iivs~~n 198 (303)
.. +..+.++++++|++ ++++||+||+|+|+. .+++++.++..++ ++ +++++|+++
T Consensus 65 ---~~---------------~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS 122 (286)
T PRK07819 65 ---ER---------------DAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTS 122 (286)
T ss_pred ---hH---------------HHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence 00 00123688889984 589999999999997 4788999999988 77 899999998
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
++...
T Consensus 123 ~~~~~ 127 (286)
T PRK07819 123 SIPIM 127 (286)
T ss_pred CCCHH
Confidence 88775
No 48
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.39 E-value=1.8e-12 Score=111.07 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=96.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||.|.||+.+|..|+++ | ++|++|+|++++.+++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~~~-------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEALAE-------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHHHH--------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhhHH--------------------------------
Confidence 68999999999999999999999 8 899999999876543210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHH--HHHHhhccCCCCEEEEeecc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl~~--l~~~l~~~~~~~iivs~~nG 199 (303)
...+...++.++++++|+||+++|. .++++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 1355678899999999999999998 578999998 8888876 67776544 3
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEE
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
+.++. .+.+.+.+... .+..+..|-+ +.....|..+ +.++++.+..++++.+|+.-+-+++
T Consensus 96 ~~p~~---------~~~~~~~~~~~--g~~~vdapV~Gg~~~a~~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET---------SRELAERLAAK--GVRYVDAPVSGGPPGAEEGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH---------HHHHHHHHHHT--TEEEEEEEEESHHHHHHHTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh---------hhhhhhhhhhc--cceeeeeeeecccccccccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 34331 12344433211 1222222222 2223344322 3456777777888888775554444
No 49
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.39 E-value=4e-12 Score=116.50 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=115.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||.+++..|.+. |+ .. ..+.+|+|++++.+++. ..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l~-------------------------~~------- 45 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARLA-------------------------ER------- 45 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHHH-------------------------HH-------
Confidence 6899999999999999999987 72 11 35688999876543211 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
+ .....+.++.++++++|+||++||++.+.++++++. +.+ ++++||+..|+..+
T Consensus 46 --~-------------------~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 46 --F-------------------PKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred --c-------------------CCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 0 023455677777889999999999999999998873 344 68999988887764
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEec-C---ChhH
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN-G---DLVT 279 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~-~---Di~g 279 (303)
.+++.++.. ...++.+|+++.....+.+. ++.+ .+.++++|+.-|-.++.. + |...
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~t~---~~~~---~~~~~~l~~~lG~~~~~~~e~~~d~~~ 159 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGVTA---IYPP---DPFVAALFDALGTAVECDSEEEYDLLA 159 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCCeE---ecCC---HHHHHHHHHhcCCcEEECChHhcccee
Confidence 467776532 23678999998876665422 2222 257778888777666543 2 2222
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022050 280 HEVMGGLKNVYAIGAGTIY 298 (303)
Q Consensus 280 ~e~~~~lkNv~Ai~~G~~~ 298 (303)
.- ++..-|+|.+...+.+
T Consensus 160 a~-~s~~a~~~~~~~~~~~ 177 (258)
T PRK06476 160 AA-SALMATYFGILETATG 177 (258)
T ss_pred eh-hccHHHHHHHHHHHHH
Confidence 22 2345666655544443
No 50
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=3e-12 Score=133.00 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=108.9
Q ss_pred CceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||+|.||+.||..++ .+ | ++|+++|++++.+++... . +.+. +.+..+... +...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~----~~~~---l~~~~~~~~-~~~~---- 369 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-Y----SWDL---LDKKVKRRH-LKPS---- 369 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcCC-CCHH----
Confidence 578999999999999999999 77 8 899999999987765321 1 1110 111111110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+. +..+.++++++|++ ++++||+||+|||+. .+++++++|.+++++ ++++.|+|++
T Consensus 370 --------~~----------~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS~ 427 (708)
T PRK11154 370 --------ER----------DKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTSS 427 (708)
T ss_pred --------HH----------HHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 01124788999984 689999999999997 589999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+..+.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 428 l~i~~l-a~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~ 471 (708)
T PRK11154 428 LPIGQI-AAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471 (708)
T ss_pred CCHHHH-HHhcCcccceEEEecCCccccCceEEEECCCCCCHHHH
Confidence 998642 12234566666666655532 256778888866544
No 51
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.38 E-value=3.4e-12 Score=132.97 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=111.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..||..++.+ | ++|+++|++++.+++... ++.+.+. +..+.. .+...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~-------~~~~~g-~~~~~---- 394 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGLN-------KKVKRK-KITSL---- 394 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHHH-------HHHHcC-CCCHH----
Confidence 457899999999999999999999 9 999999999998876431 1111111 111110 01100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+. +..+.+++.++|++ ++++||+||+||++. .+++++.+|.+++++ ++++.|+|++
T Consensus 395 --------~~----------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTSs 452 (737)
T TIGR02441 395 --------ER----------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTSA 452 (737)
T ss_pred --------HH----------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCCC
Confidence 00 01123788889986 579999999999997 589999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+..+.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 453 l~i~~l-a~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~ 496 (737)
T TIGR02441 453 LPIKDI-AAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTL 496 (737)
T ss_pred CCHHHH-HhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHH
Confidence 998642 12345667777777655532 256788888866654
No 52
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.37 E-value=2.2e-11 Score=114.20 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=117.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..|+++ | ++|++|+|++++.+.+. .
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~--------------------------~------- 41 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVAG--------------------------K------- 41 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH--------------------------H-------
Confidence 6899999999999999999998 8 89999999987654311 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.....+.++++++++ +|+||+++|.. .++++++.+.+.+++ ++++|.++..
T Consensus 42 ----------------------~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 42 ----------------------LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred ----------------------CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 023344566666655 69999999998 889999988887776 6777766533
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCe---EEEec
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDN 274 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~---~~~~~ 274 (303)
-... . +.+.+.+.... +..+..|-.-. ....|. .+.++++.+..++++.+|+.-+- +++..
T Consensus 97 ~~~~------~----~~~~~~~~~~g--~~~vdapV~G~~~~a~~g~--~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (299)
T PRK12490 97 RYKD------D----LRRAEELAERG--IHYVDCGTSGGVWGLRNGY--CLMVGGDKEIYDRLEPVFKALAPEGPGYVHA 162 (299)
T ss_pred Cchh------H----HHHHHHHHHcC--CeEEeCCCCCCHHHHhcCC--eEEecCCHHHHHHHHHHHHHhcCcCCcEEEE
Confidence 2222 1 11222221111 22333333322 222443 24456777777777777776554 45556
Q ss_pred CChhHHHHHHHHHHHH--HHHHHHHhhhc
Q 022050 275 GDLVTHEVMGGLKNVY--AIGAGTIYFLV 301 (303)
Q Consensus 275 ~Di~g~e~~~~lkNv~--Ai~~G~~~gl~ 301 (303)
.++-.....|.+-|.+ +...+++|++.
T Consensus 163 G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~ 191 (299)
T PRK12490 163 GPVGSGHFLKMVHNGIEYGMMQAYAEGLE 191 (299)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888854 45566666654
No 53
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.36 E-value=2.1e-11 Score=114.37 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=117.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||.++|..|+++ | ++|++|+|++++.+++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~~--------------------------------- 41 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEALAE--------------------------------- 41 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH---------------------------------
Confidence 6899999999999999999998 8 899999999876543110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.......++++.++. +|+||+++|.. .++++++.+.+.+++ ++++|..+++
T Consensus 42 ----------------------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 42 ----------------------EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred ----------------------CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 023344566666554 69999999997 789999988888877 7788877655
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCe----EEEe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWD 273 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~----~~~~ 273 (303)
-.... +.+.+.+-.. .+..+-.|..- .....| . .+.++++.+..++++.+|..-+- +++.
T Consensus 97 ~~~~~----------~~~~~~~~~~--g~~~~dapvsG~~~~a~~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (301)
T PRK09599 97 YYKDD----------IRRAELLAEK--GIHFVDVGTSGGVWGLERG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLH 162 (301)
T ss_pred ChhHH----------HHHHHHHHHc--CCEEEeCCCCcCHHHHhcC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEe
Confidence 43321 1122222111 12223344332 222245 3 23456777777777777765554 4555
Q ss_pred cCChhHHHHHHHHHHHH--HHHHHHHhhhc
Q 022050 274 NGDLVTHEVMGGLKNVY--AIGAGTIYFLV 301 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~--Ai~~G~~~gl~ 301 (303)
..+.=.....+.+.|.+ +...++++++.
T Consensus 163 ~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 163 AGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred ECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666668888888874 44466666654
No 54
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.36 E-value=3.4e-12 Score=107.14 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=84.4
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (303)
|+|+|+|+||+.+|..|++. | ++|++++|++ +++.++++++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 8 9999999998 7765543331 111100 0000
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccc
Q 022050 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (303)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~ 205 (303)
+ .......+..+....+|+||+|||+.+.+++++.+++++.+ ++.|++++||+...
T Consensus 52 ~-------------------~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 V-------------------QPPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp E-------------------EEEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred c-------------------ccccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 1 01222333323457899999999999999999999999998 78999999999875
Q ss_pred cccccCCHHHHHHhHhCC
Q 022050 206 AVPRIITPTQMINRATGV 223 (303)
Q Consensus 206 ~~~~~~~~~~~i~~~l~~ 223 (303)
+.+.++++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 567777754
No 55
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.36 E-value=2.8e-11 Score=117.51 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=118.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..++ . | |+|++||+++++++++++.. .+.+.++++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~~g~-----------------~~~~e~~l~~---- 52 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLNDRI-----------------SPIVDKEIQQ---- 52 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHHcCC-----------------CCCCCcCHHH----
Confidence 69999999999999998887 5 7 89999999999887755321 1222232210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHHHhhccCCCCE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-----------~~~~vl~~l~~~l~~~~~~~i 192 (303)
.+.++ ...+..+++..+++++||+||++||.. +++++++.|.. +++ +++
T Consensus 53 -------~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 53 -------FLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred -------HHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 00000 014666777777889999999999964 56778888877 555 555
Q ss_pred EEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhcCCC
Q 022050 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (303)
Q Consensus 193 ivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~~~g 268 (303)
|| ..+.+.+.+ .+.+.+.+.. ..+.++|.++.+... ..|..++.+.+++..+.+.++|....
T Consensus 113 VV-~~STv~pgt---------t~~l~~~~~~----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF---------TAAMHKKYRT----ENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch---------HHHHHHHhhc----CcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 44 455555542 1223333311 134568888765432 11334455655666677777764322
Q ss_pred e--EEE-ecCChhHHHHHHHHHHHH
Q 022050 269 F--TVW-DNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 269 ~--~~~-~~~Di~g~e~~~~lkNv~ 290 (303)
+ .+. ...++...|+.|..-|.+
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~~ 203 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANTY 203 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHHH
Confidence 1 122 468999999999999986
No 56
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.36 E-value=1.4e-11 Score=108.08 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=97.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||.|.+|..+|..||++ | ++|+.+|.+++.++.+|... .|.+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~l~~g~-----------------~p~~E~~l~----- 52 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEALNNGE-----------------LPIYEPGLD----- 52 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHHHHTTS-----------------SSS-CTTHH-----
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHHHhhcc-----------------ccccccchh-----
Confidence 8999999999999999999999 9 99999999999888765321 233333332
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
+++.+... -.++.+++|..+++.++|++|+|||.. ++.+++++|.+++.+ ++ +
T Consensus 53 ------~ll~~~~~-------~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~-l 115 (185)
T PF03721_consen 53 ------ELLKENVS-------AGRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GD-L 115 (185)
T ss_dssp ------HHHHHHHH-------TTSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CE-E
T ss_pred ------hhhccccc-------cccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cc-e
Confidence 11111110 037889999999899999999999753 588899999999887 54 4
Q ss_pred EEeeccCccccccccccC-CHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEe-CChhhHHHHHHH
Q 022050 194 ISLAKGVEAELEAVPRII-TPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKF 263 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~~~~~~i~~l 263 (303)
|.+-+.+.+.+ .. ....++.+..+.. ..+.+.+.|.+..+... ..+..++.+ .+....++++++
T Consensus 116 vV~~STvppGt-----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 116 VVIESTVPPGT-----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEESSSSSTTH-----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred EEEccEEEEee-----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 55666666652 22 2223444433321 34677788888664321 123444554 344444466553
No 57
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.35 E-value=8.2e-11 Score=110.69 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=113.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||+++|..|+++ | ++|++|+++++.++++... +... +...... .+....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~-----~~~~---l~~l~~~-g~~~~~----- 61 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAY-----IAGR---LEDLAAF-DLLDGE----- 61 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHH-----HHHH---HHHHHHc-CCCchh-----
Confidence 47999999999999999999999 9 8999999999877653321 1100 0000000 001000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. .+..+.++.+++|+.+++++||+|++++|+. .+..+++++..+.++ ++++.|.++++
T Consensus 62 --~---------------~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~ssts~~ 121 (308)
T PRK06129 62 --A---------------PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASSTSAL 121 (308)
T ss_pred --h---------------HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeCCCC
Confidence 0 0011135778899988889999999999987 578888888887776 67777777765
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
... .+.+.+..+. ..+...|-.+.... ....++. ..+.+..+.+..++..-|.++... .|.
T Consensus 122 ~~~------------~la~~~~~~~--~~~~~hp~~p~~~~--~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~ 185 (308)
T PRK06129 122 LAS------------AFTEHLAGRE--RCLVAHPINPPYLI--PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREI 185 (308)
T ss_pred CHH------------HHHHhcCCcc--cEEEEecCCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 442 2555554332 22333333321111 1112222 245667888999999888876654 566
Q ss_pred hHH
Q 022050 278 VTH 280 (303)
Q Consensus 278 ~g~ 280 (303)
.|.
T Consensus 186 ~G~ 188 (308)
T PRK06129 186 DGF 188 (308)
T ss_pred ccH
Confidence 664
No 58
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.35 E-value=3.7e-11 Score=113.94 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=117.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|+||.++|..|... | ++|++++++..+.... ...
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~~-------------------------A~~------ 59 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWKK-------------------------AEA------ 59 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHHH-------------------------HHH------
Confidence 37899999999999999999998 8 8998888775432110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl-~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+.. .+..++++.||+|+++||+....+++ +++.+++++ +++| +.+.|+.
T Consensus 60 -----------------------~G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~ 111 (330)
T PRK05479 60 -----------------------DGFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFN 111 (330)
T ss_pred -----------------------CCCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCC
Confidence 02323 36778899999999999999889998 789998887 6665 8999988
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-------HhccCceEEEEeCC--hhhHHHHHHHhcCCCe---
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPHF--- 269 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-------v~~g~~~~~~~~~~--~~~~~~i~~lf~~~g~--- 269 (303)
... ...+.+. . .-+++.+|+++.. .+.|.|+.+.+..+ .+..+.+..+|..-|-
T Consensus 112 i~~------------~~~~p~~-~-~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 112 IHF------------GQIVPPA-D-VDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred hhh------------ceeccCC-C-CcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 752 2233332 1 2367888999888 77787776544333 4456666677765443
Q ss_pred -------EEEecCChhHHH--HHHHHHHHHHHHHHH
Q 022050 270 -------TVWDNGDLVTHE--VMGGLKNVYAIGAGT 296 (303)
Q Consensus 270 -------~~~~~~Di~g~e--~~~~lkNv~Ai~~G~ 296 (303)
+-....|+.|.+ +||.+--.+..+.-+
T Consensus 178 g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~ 213 (330)
T PRK05479 178 GVIETTFKEETETDLFGEQAVLCGGLTELIKAGFET 213 (330)
T ss_pred ceeeeeecccccccchhhHHHHhhHHHHHHHHHHHH
Confidence 223346777653 455444454444433
No 59
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.35 E-value=2.8e-11 Score=120.20 Aligned_cols=197 Identities=16% Similarity=0.090 Sum_probs=128.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|++|..+|..||++ |. +++|+.+|.++++++++|..++ +.+.+++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g~---g~~V~gvD~~~~~v~~l~~g~~-----------------~~~e~gl~---- 55 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-CP---DIEVVVVDISVPRIDAWNSDQL-----------------PIYEPGLD---- 55 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC---CCeEEEEECCHHHHHHHHcCCC-----------------ccCCCCHH----
Confidence 58999999999999999999986 51 1679999999999988764431 11222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--ch-------------hHHHHHHHHHHHhhcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~~-------------~~~~vl~~l~~~l~~~ 187 (303)
+++.++. -.++.+++|..+++++||++|+||| .. ++.+++++|.+++++
T Consensus 56 -------ell~~~~--------~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 56 -------EVVKQCR--------GKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred -------HHHHHhh--------cCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 1111100 0248899999888999999999995 21 678899999999986
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEe-CCh----hhHH
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARIC-GAE----KWRK 258 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~----~~~~ 258 (303)
+++|| ..+.+.+. +...+.+.+.+... ...+.+.+.|.+..+... ..+..++++ .+. +..+
T Consensus 120 --~~lVv-~~STvp~G-----tt~~~~~~l~~~~~--g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVK-----TAEAIEKILTHNSK--GINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCC-----hHHHHHHHHHhhCC--CCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 44445544 22233333333211 124678899999775432 113334444 322 2467
Q ss_pred HHHHHhcCCC-eEEEecCChhHHHHHHHHHHHH
Q 022050 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 259 ~i~~lf~~~g-~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++++++.-. -..+...++..+|+.|..-|.|
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ 222 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF 222 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH
Confidence 7777776432 1345679999999999999987
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.33 E-value=3.2e-11 Score=111.98 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=110.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||+++|..|.++ | ++|++|+++++.++++... +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~~~------------------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAIER------------------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHC------------------------CC------
Confidence 6899999999999999999998 8 8999999998765432100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
-...+++. +++++||+||+|+|+....++++++.+++++ +++ ++.+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~i-i~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EAI-VTDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---CcE-EEeCcchHHH
Confidence 00122344 3578999999999999999999999998876 554 4555454432
Q ss_pred cccccccCCHHHHHHhHhCC--CCccEEEEeCCC-----cHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEe
Q 022050 204 LEAVPRIITPTQMINRATGV--PIENILYLGGPN-----IAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~--~~~~~~v~~GP~-----~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
. .+.+.+.... ..|| +.||. .+. .+..+.+..++.. .+.+..+.++++++..|.+++.
T Consensus 97 ~---------~~~~~~~~~~~v~~HP---m~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~ 164 (279)
T PRK07417 97 I---------VEAWEKLHPRFVGSHP---MAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYT 164 (279)
T ss_pred H---------HHHHHHhhCCceeeCC---cCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 1111121110 0112 12322 111 1345555444432 3456778899999999988876
Q ss_pred cCChhHHHHHHHHHHHHHHHH
Q 022050 274 NGDLVTHEVMGGLKNVYAIGA 294 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~Ai~~ 294 (303)
.+.-..-+..+..-|.-++.+
T Consensus 165 ~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 165 ADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred cCHHHHHHHHHHHcchHHHHH
Confidence 666666666666666555444
No 61
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.33 E-value=3.5e-11 Score=117.86 Aligned_cols=194 Identities=12% Similarity=-0.038 Sum_probs=121.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||.|.||..+|..|+++ | ++|++||+++++++.++... .+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l~~g~-----------------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTINRGE-----------------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHCCC-----------------CCcCCCCHH----
Confidence 48999999999999999999999 9 99999999999887654221 112222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHHHhhccCCCCE
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------~~~~~vl~~l~~~l~~~~~~~i 192 (303)
+.+.+... ...+.++++. ++||+||+|||. ..+.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~-------~g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVE-------GGYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhh-------cCceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 00000000 0135555543 479999999997 4788888999998887 665
Q ss_pred EEEeeccCccccccccccCCHHHHHHhHhCC--------CCccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHH
Q 022050 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPL 260 (303)
Q Consensus 193 ivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~--------~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i 260 (303)
|| ..+.+.+.+ .......+.+.-.. ....+.+.+.|.+..+... +.+..++.+.+.+..+++
T Consensus 115 VI-~~STv~pgt-----t~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~ 188 (415)
T PRK11064 115 VI-LESTSPVGA-----TEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARA 188 (415)
T ss_pred EE-EeCCCCCCH-----HHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEeCCHHHHHHH
Confidence 54 454555542 22233333332110 0113556778866543221 223333333366677788
Q ss_pred HHHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 261 AKFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 261 ~~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+.+|+.-+-..+...++...|.+|..-|.+
T Consensus 189 ~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~ 218 (415)
T PRK11064 189 SELYKIFLEGECVVTNSRTAEMCKLTENSF 218 (415)
T ss_pred HHHHHHhcCCCeeeCCHHHHHHHHHHHHHH
Confidence 888775443444566899999999999986
No 62
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.33 E-value=2.5e-11 Score=113.73 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=114.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|+||+|||+|.||.++|..|+++ | ++|++|+|++++.+.+...
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~~~------------------------------- 43 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALVDK------------------------------- 43 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHc-------------------------------
Confidence 36899999999999999999998 8 8999999998765432100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~---l~~~l~~~~~~~iivs~~n 198 (303)
....++++.++++++|+||+++|+. .+++++.. +.+.+++ ++++|.++.
T Consensus 44 ------------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT 96 (296)
T PRK15461 44 ------------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMST 96 (296)
T ss_pred ------------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCC
Confidence 1223456777889999999999998 47777643 4444555 677776654
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+-... .+.+.+.+.... +..+-.|-.- .....|..+ +..+++.+..++++.+|+.-+-+++...+
T Consensus 97 ~~p~~----------~~~l~~~l~~~g--~~~ldapV~g~~~~a~~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~ 163 (296)
T PRK15461 97 IHPLQ----------TDKLIADMQAKG--FSMMDVPVGRTSDNAITGTLL-LLAGGTAEQVERATPILMAMGNELINAGG 163 (296)
T ss_pred CCHHH----------HHHHHHHHHHcC--CcEEEccCCCCHHHHHhCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCC
Confidence 43322 122333221111 1122333321 112234322 23456777778888888776667777777
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHhhh
Q 022050 277 LVTHEVMGGLKNVYA--IGAGTIYFL 300 (303)
Q Consensus 277 i~g~e~~~~lkNv~A--i~~G~~~gl 300 (303)
.=.....+..-|.+. ...++++++
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~ 189 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAA 189 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766678888888653 234444443
No 63
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.32 E-value=3.3e-11 Score=106.70 Aligned_cols=165 Identities=17% Similarity=0.173 Sum_probs=111.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+|+|+|+|+||+++|..|++. | |+|++-.|+.+...+.. .+ ++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a~--------a~-------------~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAAA--------AA-------------ALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHHH--------HH-------------hhc-------
Confidence 68999999999999999999999 8 99999866654322110 00 110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+.++. .++++|++.+|+||++||.....++++++...+. +++||+.+|.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 12322 3466788999999999999999999999998776 4799999998642
Q ss_pred ----cc-ccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccC----ceEEEEeCC-hhhHHHHHHHhcCCCeE
Q 022050 203 ----EL-EAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKE----YANARICGA-EKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 203 ----~~-~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~----~~~~~~~~~-~~~~~~i~~lf~~~g~~ 270 (303)
.. ...+...+.+++++++++.. + ++...|+ +..+.... .+.+.+++| .+..+.+.++.+..||+
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~a--k--VVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGA--K--VVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCc--c--hhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 11 11134556789999999753 2 3333444 22222211 122334554 45678888999988998
Q ss_pred EEe
Q 022050 271 VWD 273 (303)
Q Consensus 271 ~~~ 273 (303)
...
T Consensus 175 ~ld 177 (211)
T COG2085 175 PLD 177 (211)
T ss_pred eee
Confidence 764
No 64
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.32 E-value=5.1e-11 Score=111.06 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=109.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||..+|..|++. | ++|.+|+|++++.+++. .
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~~--------------------------~------ 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEVI--------------------------A------ 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH--------------------------H------
Confidence 37999999999999999999998 8 89999999987554211 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~n 198 (303)
.....+++++++++++|+||+++|.. .++.++ +.+.+.+.+ +++++.++
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~s- 96 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMS- 96 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECC-
Confidence 02334566778888999999999964 456665 446666666 67777554
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--HhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--v~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+.+.. .+.+.+.+.... +..+..|-+... ...+... ++.+++.+..+.+..+|..-+.++....+
T Consensus 97 t~~~~~---------~~~l~~~~~~~g--~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 97 SIAPLA---------SREIAAALKAKG--IEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred CCCHHH---------HHHHHHHHHHcC--CcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 333321 123333332111 123344433211 1123222 33456667778888888877766665556
Q ss_pred hhHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVY 290 (303)
Q Consensus 277 i~g~e~~~~lkNv~ 290 (303)
.-..+..|..-|.+
T Consensus 165 ~g~a~~~Kl~~n~~ 178 (296)
T PRK11559 165 IGAGNVTKLANQVI 178 (296)
T ss_pred cCHHHHHHHHHHHH
Confidence 66678888888854
No 65
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.32 E-value=5.8e-11 Score=118.89 Aligned_cols=121 Identities=22% Similarity=0.342 Sum_probs=85.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||+.||..++.+ | ++|++|+++++.+++... + ++.. +.+..+... +...
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~----i~~~---l~~~~~~G~-~~~~---- 64 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-G----IEAR---LNSLVTKGK-LTAE---- 64 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHhcCC-CCHH----
Confidence 357899999999999999999999 9 999999999998875431 1 1111 111111110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
. + +..+.+++.++++++ +.+||+||+|||+. .++.++.++..++++ ++++.|++++
T Consensus 65 ---~--~-------------~~~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTSt 122 (503)
T TIGR02279 65 ---E--C-------------ERTLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSS 122 (503)
T ss_pred ---H--H-------------HHHHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence 0 0 011236888889865 67999999999985 578889999998888 7888889988
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
+..+
T Consensus 123 l~i~ 126 (503)
T TIGR02279 123 LSIT 126 (503)
T ss_pred CCHH
Confidence 8775
No 66
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.29 E-value=8.4e-11 Score=108.79 Aligned_cols=182 Identities=14% Similarity=0.159 Sum_probs=109.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||+++|..|.++ |+ ..+|++|+|+++..+.... . +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~---~~~v~~~d~~~~~~~~~~~-----------------------~-g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL---ISKVYGYDHNELHLKKALE-----------------------L-G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CCEEEEEcCCHHHHHHHHH-----------------------C-C-------
Confidence 6899999999999999999988 72 1378889998765442110 0 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
-.....++.++. ++|+||+|||+....++++++.+ +++ +++|+++ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123455544 59999999999999999999988 776 6777753 22211
Q ss_pred cccccccCCHHHHHHhHhCCC---CccEE--EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecC
Q 022050 204 LEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~---~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.+.+.+.+..+.. .+|+. ..+||..+. ...+|....++.. .+.+..+.+..+|+..|.+++..+
T Consensus 96 --------~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 96 --------KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred --------HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 1223333321110 11211 113343332 2445654433332 344567899999999998887766
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHh
Q 022050 276 DLVTHEVMGGLKNV-YAIGAGTIY 298 (303)
Q Consensus 276 Di~g~e~~~~lkNv-~Ai~~G~~~ 298 (303)
.-..-+..+..-|+ .+++.++++
T Consensus 168 ~~~hD~~~a~vs~lph~~a~~l~~ 191 (275)
T PRK08507 168 AKEHDLHAAYISHLPHIISFALAN 191 (275)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 65555555554443 233444433
No 67
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.28 E-value=1.7e-10 Score=113.80 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=107.7
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+||| +|.||.++|..|... | ++|++|+|+++...+.. ..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~a-------------------------~~------ 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEVA-------------------------KE------ 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHHH-------------------------HH------
Confidence 7999998 799999999999998 8 89999999876542210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++..+++.++|+||+|+|.....++++++.+++++ +++|+++++.-.
T Consensus 44 -----------------------~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsSvK~- 96 (437)
T PRK08655 44 -----------------------LGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTSVKE- 96 (437)
T ss_pred -----------------------cCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEcccccH-
Confidence 02345567777889999999999999999999999998887 788877663211
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEE---EEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~---v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+.+.+.++++... .++ -+.||+.+ ...+....++.. .+.+..+.++++|+..|.+++..+.
T Consensus 97 ---------~~~~~l~~~~~~~~-~~V~~HPmaGp~~~--~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~ 163 (437)
T PRK08655 97 ---------RPVEAMEEYAPEGV-EILPTHPMFGPRTP--SLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSP 163 (437)
T ss_pred ---------HHHHHHHHhcCCCC-EEEEcCCCCCCCCc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 12344556554211 111 12356654 234443333332 2456789999999999999886543
No 68
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.27 E-value=7e-11 Score=110.05 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=108.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|||+|.||..+|..|+++ | ++|++|+|++++.+++.. .
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~~~------------------------~--------- 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADELLA------------------------A--------- 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH------------------------C---------
Confidence 699999999999999999998 8 899999999876543210 0
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeeccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+....++..+++++||+||+++|.. .+++++ +.+.+.+++ +++++.++ .+
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~s-t~ 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMS-SI 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECC-CC
Confidence 1122346677889999999999985 566665 335555555 67777544 33
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
.+.. .+.+.+.+.... +..+..|-+..+.. .+.. .++.+++++..+.+..+|+.-+.+++.....-
T Consensus 96 ~~~~---------~~~l~~~l~~~g--~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g 163 (291)
T TIGR01505 96 SPIE---------SKRFAKAVKEKG--IDYLDAPVSGGEIGAIEGTL-SIMVGGDQAVFDRVKPLFEALGKNIVLVGGNG 163 (291)
T ss_pred CHHH---------HHHHHHHHHHcC--CCEEecCCCCCHHHHhcCCE-EEEecCCHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 3321 122333332111 22334554432222 2322 23445666777888888888777776665555
Q ss_pred HHHHHHHHHHHHHH
Q 022050 279 THEVMGGLKNVYAI 292 (303)
Q Consensus 279 g~e~~~~lkNv~Ai 292 (303)
..+.+++.-|.+..
T Consensus 164 ~a~~~Kl~~n~~~~ 177 (291)
T TIGR01505 164 DGQTCKVANQIIVA 177 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 56778888777654
No 69
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.27 E-value=5.6e-11 Score=110.74 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=116.0
Q ss_pred EECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCccc
Q 022050 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (303)
Q Consensus 48 VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 127 (303)
|||.|.||.++|..|+++ | ++|++|+|++++.+.+..
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~------------------------------------- 37 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEAVA------------------------------------- 37 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-------------------------------------
Confidence 689999999999999998 8 899999999876543210
Q ss_pred chhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHHHhhccCCCCEEEEeeccCccc
Q 022050 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl---~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.+...+.++.++++++|+||++||+ .++++++ +.+.+.+.+ ++++|.++ ++.++
T Consensus 38 ------------------~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 38 ------------------AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred ------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 0233456778888999999999998 5688888 677777766 67777665 76664
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--HhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--v~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+ ...+.+.+.+ .| ...+..|-.-.. ...|.. .+.++++.+..++++.+|+.-+-+++...+.-.-+
T Consensus 96 ~-----~~~~~~~~~~-~g-----~~~vdaPv~Gg~~~a~~g~l-~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~ 163 (288)
T TIGR01692 96 S-----ARKLAELAAA-HG-----AVFMDAPVSGGVGGARAGTL-TFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQ 163 (288)
T ss_pred H-----HHHHHHHHHH-cC-----CcEEECCCCCCHHHHhhCcE-EEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHH
Confidence 2 2223333322 12 123343433221 123322 22346666777888888887676666666667778
Q ss_pred HHHHHHHHHHH--HHHHHhhhc
Q 022050 282 VMGGLKNVYAI--GAGTIYFLV 301 (303)
Q Consensus 282 ~~~~lkNv~Ai--~~G~~~gl~ 301 (303)
..|..-|.+-- ..++.+++.
T Consensus 164 ~~Kl~~n~~~~~~~~~~~Ea~~ 185 (288)
T TIGR01692 164 AAKICNNMLLGISMIGTAEAMA 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999897432 235666553
No 70
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.26 E-value=1.2e-10 Score=115.73 Aligned_cols=187 Identities=15% Similarity=0.053 Sum_probs=119.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+++|+|||.|.||+++|..|+++ | ++|++|+|++++++.+++.+ .+ ++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~~~----------------~~----~g------ 48 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVKKA----------------KE----GN------ 48 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhh----------------hh----cC------
Confidence 46899999999999999999999 9 99999999998776532110 00 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~---~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
..+..+.++++++. ++|+||++||+ ..++++++++.+++.+ +.+||...|
T Consensus 49 -----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn 102 (470)
T PTZ00142 49 -----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGN 102 (470)
T ss_pred -----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 02445677888775 58988888655 5799999999999987 789999998
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH-h-ccCceEEEEeCChhhHHHHHHHhcCCCeE------
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI-Y-NKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev-~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------ 270 (303)
+...++ . +...+..... +..+..|-.-.+. + .| + .+.++++.+..++++.+|..-+-+
T Consensus 103 ~~~~dt-----~----~r~~~l~~~G---i~fldapVSGG~~gA~~G-~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~ 168 (470)
T PTZ00142 103 EWYLNT-----E----RRIKRCEEKG---ILYLGMGVSGGEEGARYG-P-SLMPGGNKEAYDHVKDILEKCSAKVGDSPC 168 (470)
T ss_pred CCHHHH-----H----HHHHHHHHcC---CeEEcCCCCCCHHHHhcC-C-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCe
Confidence 876652 1 1122221111 1223333332221 2 34 3 345677777777777777765444
Q ss_pred EEecCChhHHHHHHHHHHHH--HHHHHHHhhhc
Q 022050 271 VWDNGDLVTHEVMGGLKNVY--AIGAGTIYFLV 301 (303)
Q Consensus 271 ~~~~~Di~g~e~~~~lkNv~--Ai~~G~~~gl~ 301 (303)
+.+..+.=.-...|.+-|.+ +....++|++.
T Consensus 169 ~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~ 201 (470)
T PTZ00142 169 VTYVGPGSSGHYVKMVHNGIEYGDMQLISESYK 201 (470)
T ss_pred EEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334433335667777754 55566666653
No 71
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.25 E-value=2.5e-10 Score=114.53 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..||..++.+ | ++|++||++++.+++... ++...+. +..+....-+..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~-------~~~~~G~~~~~~---- 67 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARLA-------KLVEKGKLTAEQ---- 67 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHH-------HHHHcCCCCHHH----
Confidence 457899999999999999999999 9 999999999998876431 1111111 111111000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
. +..+.+++.++++++ +.+||+||++||+. .++.++.++..++++ +++++|.+++
T Consensus 68 ----~---------------~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntSt 124 (507)
T PRK08268 68 ----A---------------DAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSS 124 (507)
T ss_pred ----H---------------HHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 011236888888865 67999999999996 467788889988887 7888889988
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
++++
T Consensus 125 l~i~ 128 (507)
T PRK08268 125 LSIT 128 (507)
T ss_pred CCHH
Confidence 8775
No 72
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=1.8e-10 Score=110.11 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=124.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....++|+|||.|.+|..+|..+|++ | ++|+.+|.++.+++.+|... +....+.+.
T Consensus 6 k~~~~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~ln~G~-----------------~~i~e~~~~- 61 (436)
T COG0677 6 KNMSATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDKLNRGE-----------------SYIEEPDLD- 61 (436)
T ss_pred cCCceEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHHHhCCc-----------------ceeecCcHH-
Confidence 33458999999999999999999999 9 89999999999998766321 111111111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCC
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERIT 189 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~ 189 (303)
+++.+.+. ..++++|+|.++ ++.||++|+|||.. ++....+.|+++|++
T Consensus 62 ----------~~v~~~v~-------~g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k--- 120 (436)
T COG0677 62 ----------EVVKEAVE-------SGKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK--- 120 (436)
T ss_pred ----------HHHHHHHh-------cCCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC---
Confidence 11111111 136899999987 56999999999883 688899999999997
Q ss_pred CCEEEEeeccCccccccccccCCHHHHHHhH-hCCC-CccEEEEe-----CCCcHHHHhccCceEEEEeC-ChhhHHHHH
Q 022050 190 VPVIISLAKGVEAELEAVPRIITPTQMINRA-TGVP-IENILYLG-----GPNIASEIYNKEYANARICG-AEKWRKPLA 261 (303)
Q Consensus 190 ~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~-l~~~-~~~~~v~~-----GP~~a~ev~~g~~~~~~~~~-~~~~~~~i~ 261 (303)
+..| .+-+.+.+. +++.+...+.+. .|-. ...+.+-. .|+....-.... .. ++++ +.+..+..+
T Consensus 121 G~LV-IlEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~-~k-VIgG~tp~~~e~a~ 192 (436)
T COG0677 121 GDLV-ILESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNN-PK-VIGGVTPKCAELAA 192 (436)
T ss_pred CCEE-EEecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcC-Cc-eeecCCHHHHHHHH
Confidence 5544 455555554 233333333332 1111 01233333 333322111111 11 3343 444556666
Q ss_pred HHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 262 ~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++++---.....+|...+|+++.+.|+|
T Consensus 193 ~lY~~iv~~~~~vts~~tAEm~Kl~EN~f 221 (436)
T COG0677 193 ALYKTIVEGVIPVTSARTAEMVKLTENTF 221 (436)
T ss_pred HHHHHheEEEEEcCChHHHHHHHHHhhhh
Confidence 66655444467789999999999999986
No 73
>PLN02256 arogenate dehydrogenase
Probab=99.24 E-value=2e-10 Score=108.09 Aligned_cols=171 Identities=14% Similarity=0.095 Sum_probs=112.8
Q ss_pred CchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhh
Q 022050 23 GSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (303)
...|.||+|= ..+...|||+|||+|.||.++|..|.+. | ++|++|++++.. +.
T Consensus 21 ~~~~~~~~~~-----~~~~~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~--------------- 73 (304)
T PLN02256 21 FDYESRLQEE-----LEKSRKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI--------------- 73 (304)
T ss_pred CChHhHHhHh-----hccCCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------------
Confidence 3446777763 2233568999999999999999999988 8 899999998631 10
Q ss_pred HHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHH-
Q 022050 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI- 180 (303)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l- 180 (303)
.... ++...++.++++ .++|+||+|||+..+.++++++
T Consensus 74 -----------a~~~-----------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~ 113 (304)
T PLN02256 74 -----------AAEL-----------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLP 113 (304)
T ss_pred -----------HHHc-----------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhh
Confidence 0000 123345666655 4799999999999999999998
Q ss_pred HHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEE-----e
Q 022050 181 SRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARI-----C 251 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~-----~ 251 (303)
.+++++ +++|+++.++-.. +.+.+.+.++.. . ..+...|.+..+... +.+.+... .
T Consensus 114 ~~~l~~---~~iviDv~SvK~~----------~~~~~~~~l~~~-~-~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~ 178 (304)
T PLN02256 114 LQRLKR---STLFVDVLSVKEF----------PKNLLLQVLPEE-F-DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDE 178 (304)
T ss_pred hhccCC---CCEEEecCCchHH----------HHHHHHHhCCCC-C-eEEecCCCCCCCCCccccCCCeEEEecceecCC
Confidence 566776 7888877752111 123466666432 1 256788888776542 22222111 1
Q ss_pred -CChhhHHHHHHHhcCCCeEEEecC
Q 022050 252 -GAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 252 -~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.+.+..+.+.++|+..|.+++..+
T Consensus 179 ~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 179 GEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 133567889999998888887643
No 74
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.22 E-value=3.4e-10 Score=111.21 Aligned_cols=194 Identities=9% Similarity=0.087 Sum_probs=121.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||.|.||..+|..|+. | ++|+.||+++++++.++.. ..+.+.+.++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~--~-----~~V~g~D~~~~~ve~l~~G-----------------~~~~~e~~~~--- 57 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK--S-----RQVVGFDVNKKRILELKNG-----------------VDVNLETTEE--- 57 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc--C-----CEEEEEeCCHHHHHHHHCc-----------------CCCCCCCCHH---
Confidence 45999999999999999999876 4 8999999999988875521 1122222221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVP 191 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ 191 (303)
++.. ...+.++++.+ ++++||++|+|||.. ++....+.|.+++++ ++
T Consensus 58 --------~l~~-----------~g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~---g~ 114 (425)
T PRK15182 58 --------ELRE-----------ARYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR---GD 114 (425)
T ss_pred --------HHHh-----------hCCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---CC
Confidence 1100 02466777765 578999999999853 455556778888876 56
Q ss_pred EEEEeeccCccccccccccC-CHHHHHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhc
Q 022050 192 VIISLAKGVEAELEAVPRII-TPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLR 265 (303)
Q Consensus 192 iivs~~nGi~~~~~~~~~~~-~~~~~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~ 265 (303)
+|| ..+.+.+.+ .. ....++.+..|.. ...+.+.+.|.+..+... +.+..++.+.++...+.+..+++
T Consensus 115 lVI-~~STv~pgt-----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~ 188 (425)
T PRK15182 115 IVV-YESTVYPGC-----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQ 188 (425)
T ss_pred EEE-EecCCCCcc-----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHH
Confidence 544 555666652 11 1223333322211 113456677777654432 12233444555555566777766
Q ss_pred CCC-eEEEecCChhHHHHHHHHHHHHH
Q 022050 266 RPH-FTVWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 266 ~~g-~~~~~~~Di~g~e~~~~lkNv~A 291 (303)
.-. ...+...++...|+.|.+-|.+-
T Consensus 189 ~~~~~~~~~~~~~~~AE~~Kl~~N~~~ 215 (425)
T PRK15182 189 QIISAGTYKAESIKVAEAAKVIENTQR 215 (425)
T ss_pred HHhhcCcEEecCHHHHHHHHHHHHHHH
Confidence 432 22456778999999999999874
No 75
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.20 E-value=8.5e-10 Score=103.65 Aligned_cols=165 Identities=21% Similarity=0.157 Sum_probs=102.1
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....+||+|||+|.||.++|..|.+. |. .++|++|+|++++.+.+.. . +.
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a~~-----------------------~-g~-- 52 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARARE-----------------------L-GL-- 52 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHHHh-----------------------C-CC--
Confidence 33458999999999999999999988 71 1389999999875542110 0 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
....+.++.+++++||+||+|+|+....++++++.+++++ +++|+. ..+
T Consensus 53 ---------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~d-vgs 101 (307)
T PRK07502 53 ---------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVTD-VGS 101 (307)
T ss_pred ---------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEEe-Ccc
Confidence 1123345666788999999999999999999999888876 665543 333
Q ss_pred CccccccccccCCHHHHHHhHhCCC-----CccEE--EEeCCCcH-HHHhccCceEEEE--eCChhhHHHHHHHhcCCCe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVP-----IENIL--YLGGPNIA-SEIYNKEYANARI--CGAEKWRKPLAKFLRRPHF 269 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~--v~~GP~~a-~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~ 269 (303)
+... ..+.+.+.++.. .+|+. ..+||..+ .++..|.+..++. ..+.+..+.+.++|+..|.
T Consensus 102 ~k~~---------~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~ 172 (307)
T PRK07502 102 VKAS---------VIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGA 172 (307)
T ss_pred chHH---------HHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 3221 112233333211 11211 11233322 1344554443333 2345577889999999998
Q ss_pred EEEec
Q 022050 270 TVWDN 274 (303)
Q Consensus 270 ~~~~~ 274 (303)
+++..
T Consensus 173 ~~~~~ 177 (307)
T PRK07502 173 RVEEM 177 (307)
T ss_pred EEEEc
Confidence 88764
No 76
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.20 E-value=7.5e-10 Score=105.85 Aligned_cols=178 Identities=14% Similarity=0.076 Sum_probs=113.5
Q ss_pred ceEEEECCCh--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 44 ~kI~VIGaG~--------------------mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
|||.|.|+|+ -|+++|..|+++ | ++|++|+|+++.++. .+ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~----~~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---EL----WK----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HH----HH-----
Confidence 7888888886 388899999999 8 999999999875431 00 00
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl~~l~~ 182 (303)
.+.. .++++++|..+++++||+||+++|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0000 145667788888899999999999998 8999999999
Q ss_pred HhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCC--------CccEEEEeCCCcHHHHhccCceEEEEeCCh
Q 022050 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~--------~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~ 254 (303)
.+++ +++|++++++ .+. ..++.+.+.++.+ .++..+..+|++...+..|.++......++
T Consensus 105 ~L~~---g~IVId~ST~-~~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTV-SPV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCC-CHH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8887 7777765544 322 1223454554311 012223334444443333332211223456
Q ss_pred hhHHHHHHHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 255 ~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+..++++.+|+..|.+++..+ .--....+.+-|++
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l 207 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLV 207 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHH
Confidence 678999999999999887665 33334444455544
No 77
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.17 E-value=3.6e-12 Score=113.39 Aligned_cols=160 Identities=21% Similarity=0.321 Sum_probs=116.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhh-----hcccchh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIR-----RCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-----~~~~l~~ 116 (303)
.+++|+|||+|.||+.||+..|.. | ++|.++|++++.+.+..+ .|.+. +++... ++..+.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-----~I~~s---l~rvakKk~~~~~~~~~- 74 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-----AISSS---LKRVAKKKKADDPVALE- 74 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-----HHHHH---HHHHHhhcccCChhhHH-
Confidence 457899999999999999999999 9 999999999988876441 23322 222111 111111
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEE
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
|.+ +..+..++.++|..+++.++|+||+|+-+. .++.++++|...+++ ++++.
T Consensus 75 -------------e~v---------~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~ 129 (298)
T KOG2304|consen 75 -------------EFV---------DDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILA 129 (298)
T ss_pred -------------HHH---------HHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEe
Confidence 111 112346888899999999999999999875 588999999999887 89999
Q ss_pred EeeccCccccccccccCCHHHHHHhHhCCCC---ccEEEEeCCCcHHHHhc
Q 022050 195 SLAKGVEAELEAVPRIITPTQMINRATGVPI---ENILYLGGPNIASEIYN 242 (303)
Q Consensus 195 s~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~---~~~~v~~GP~~a~ev~~ 242 (303)
++++.+..... ......++++..-||..|. .-+.++.++.+..+...
T Consensus 130 tNTSSl~lt~i-a~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~ 179 (298)
T KOG2304|consen 130 TNTSSLSLTDI-ASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFN 179 (298)
T ss_pred ecccceeHHHH-HhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHH
Confidence 99998887542 2346678888887876552 11468889998877653
No 78
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.17 E-value=4.1e-10 Score=102.78 Aligned_cols=114 Identities=22% Similarity=0.177 Sum_probs=89.5
Q ss_pred eEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 148 i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+..+.++.++++++|+||+|||++.++++++++.+.+.+ +++|||+++|+..+ .+.++++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 445567777788999999999999999999999987765 68999999999885 377778632 2
Q ss_pred EEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 228 ILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 228 ~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
..++.+||++..+++|...+... ..+.+..+.+.++|+..|...++.++.+
T Consensus 94 ~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~ 145 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALM 145 (245)
T ss_pred eEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHc
Confidence 47899999999999886433221 1234577899999999999888876654
No 79
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.15 E-value=1e-09 Score=105.46 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=102.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.||++||..|.++ | ++|.+|+++++..+... . .+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~~~---------a---------------~~~------ 44 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQLAR---------A---------------LGF------ 44 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHHHH---------H---------------hcC------
Confidence 4799999999999999999998 8 89999999886432100 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~~ 202 (303)
.. ....++++.+++++||+||+|||++.+.++++++.+. +++ ++ +++...++..
T Consensus 45 -~~--------------------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 45 -GV--------------------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred -CC--------------------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 00 0123456777889999999999999999999999873 665 54 4444444433
Q ss_pred ccccccccCCHHHHHHhHhCCC-----CccEE--EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEE
Q 022050 203 ELEAVPRIITPTQMINRATGVP-----IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~-----~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~ 272 (303)
. +.+.+.+.++.. .||+. ..+||..+. ++..+.++.++.. .+.+..+.++++|+..|.+++
T Consensus 100 ~---------i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v 170 (359)
T PRK06545 100 A---------ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFV 170 (359)
T ss_pred H---------HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 112233332211 12211 123333333 4556665554443 345678899999999998886
Q ss_pred ec
Q 022050 273 DN 274 (303)
Q Consensus 273 ~~ 274 (303)
..
T Consensus 171 ~~ 172 (359)
T PRK06545 171 VL 172 (359)
T ss_pred EC
Confidence 43
No 80
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.12 E-value=1.3e-09 Score=108.78 Aligned_cols=191 Identities=17% Similarity=0.084 Sum_probs=119.8
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
....+++|+|||.|.||..+|..|+++ | ++|++|+|++++.+.+.+.+ ...+.
T Consensus 2 ~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~~~~--------------------~~~Ga- 54 (493)
T PLN02350 2 ASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETVERA--------------------KKEGN- 54 (493)
T ss_pred CCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHhh--------------------hhcCC-
Confidence 345678999999999999999999999 9 99999999988765422100 00000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEE
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+....+++++++. +|+||++||.. .++++++.+.+.+.+ +.++|
T Consensus 55 ---------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~iiI 104 (493)
T PLN02350 55 ---------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCII 104 (493)
T ss_pred ---------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEEE
Confidence 012344567777665 99999999986 678898888888877 78888
Q ss_pred EeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-Hh-ccCceEEEEeCChhhHHHHHHHhcCCCe---
Q 022050 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-IY-NKEYANARICGAEKWRKPLAKFLRRPHF--- 269 (303)
Q Consensus 195 s~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~--- 269 (303)
...+.-...+ +.+.+.+-.. .+..+..|-.-.+ .+ .| + .+.++++.+..++++.+|+.-+-
T Consensus 105 D~sT~~~~~t----------~~~~~~l~~~--Gi~fldapVSGG~~gA~~G-~-~im~GG~~~a~~~v~pvL~~ia~k~~ 170 (493)
T PLN02350 105 DGGNEWYENT----------ERRIKEAAEK--GLLYLGMGVSGGEEGARNG-P-SLMPGGSFEAYKNIEDILEKVAAQVD 170 (493)
T ss_pred ECCCCCHHHH----------HHHHHHHHHc--CCeEEeCCCcCCHHHhcCC-C-eEEecCCHHHHHHHHHHHHHHhhhcC
Confidence 7765433321 1122222111 1223333333222 22 34 3 34567777777888888775442
Q ss_pred ---EEEecCChhHHHHHHHHHHH--HHHHHHHHhhh
Q 022050 270 ---TVWDNGDLVTHEVMGGLKNV--YAIGAGTIYFL 300 (303)
Q Consensus 270 ---~~~~~~Di~g~e~~~~lkNv--~Ai~~G~~~gl 300 (303)
.+....+.=.-...+..-|. |+...+++|++
T Consensus 171 ~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~ 206 (493)
T PLN02350 171 DGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAY 206 (493)
T ss_pred CCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444555455677777784 45555565554
No 81
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.11 E-value=1.9e-09 Score=100.25 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=116.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||++||.|.||..+|..|.++ | |+|++|+|++++.... +..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~~-------------------------~~~------- 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAEL-------------------------LAA------- 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhHH-------------------------HHH-------
Confidence 6899999999999999999999 9 9999999999863210 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH---HHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE---EISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~---~l~~~l~~~~~~~iivs~~nG 199 (303)
.......++.++++++|+||.+||.. ++++++- .+...+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 02334566778899999999999886 6888884 46666666 77777554 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
++++. .+.+.+.+-.. ....+-.|-.-.... .|.. .+.++++.+..++++.+|+.-+-+++..-+.
T Consensus 97 isp~~---------a~~~a~~~~~~--G~~~lDAPVsGg~~~A~~GtL-timvGG~~~~f~r~~pvl~~~g~~i~~~G~~ 164 (286)
T COG2084 97 ISPET---------ARELAAALAAK--GLEFLDAPVSGGVPGAAAGTL-TIMVGGDAEAFERAKPVLEAMGKNIVHVGPV 164 (286)
T ss_pred CCHHH---------HHHHHHHHHhc--CCcEEecCccCCchhhhhCce-EEEeCCCHHHHHHHHHHHHHhcCceEEECCC
Confidence 45431 12233322110 012233333322222 2321 2334678888999999999989888887777
Q ss_pred hHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAI 292 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai 292 (303)
=.-+..|..-|++..
T Consensus 165 G~G~~~Kl~nn~l~~ 179 (286)
T COG2084 165 GAGQAAKLANNILLA 179 (286)
T ss_pred CchHHHHHHHHHHHH
Confidence 667888888888754
No 82
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.07 E-value=2.4e-09 Score=100.27 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=107.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||.|.||.++|..|.++ | ++|++|+|++. .+++ ..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~~--------------------------~~------- 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADEL--------------------------LS------- 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHHH--------------------------HH-------
Confidence 6899999999999999999999 8 89999999863 2210 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~---l~~~l~~~~~~~iivs~~nG 199 (303)
.......++.++++++|+||++||.. .+++++.. +...+.+ ++++|.++ +
T Consensus 41 ----------------------~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 41 ----------------------LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 01223456777788999999999986 56776632 3333444 66666544 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+.+.+ .+.+.+.+.... ...+..|-.-.... .|... +.++++.+..++++.+|+.-+-+++.-.+.
T Consensus 95 ~~p~~---------~~~~~~~~~~~G--~~~vdaPVsGg~~~a~~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~ 162 (292)
T PRK15059 95 ISPIE---------TKRFARQVNELG--GDYLDAPVSGGEIGAREGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGN 162 (292)
T ss_pred CCHHH---------HHHHHHHHHHcC--CCEEEecCCCCHHHHhcCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCc
Confidence 44431 122222221111 11223343322221 33322 234667777888888888766666555665
Q ss_pred hHHHHHHHHHHHHHH--HHHHHhhh
Q 022050 278 VTHEVMGGLKNVYAI--GAGTIYFL 300 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai--~~G~~~gl 300 (303)
=..+..|.+-|.+.- ..++.|++
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~ 187 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEAL 187 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666687753 23555554
No 83
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.06 E-value=2.1e-09 Score=106.67 Aligned_cols=184 Identities=14% Similarity=0.054 Sum_probs=114.0
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
+|+|||.|.||.++|..|+++ | ++|++|+|++++++.+.++ +..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~~~---------------------~~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFLAE---------------------HAKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHhh---------------------ccCC--------
Confidence 489999999999999999999 9 8999999999876542210 0000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~---~~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+....++++.+ +.+|+||++||+ ..++++++++.+++.+ +.+||...|+.
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455543 568999999999 6899999999999887 78999888765
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-Hh-ccCceEEEEeCChhhHHHHHHHhcCCCeE------EE
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-IY-NKEYANARICGAEKWRKPLAKFLRRPHFT------VW 272 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------~~ 272 (303)
...+ .+...+..... +..+.+|-.-.. .+ .| + .+.++++.+..++++.+|..-+-+ +.
T Consensus 102 ~~~t---------~~~~~~l~~~g---i~fvdapVsGG~~gA~~G-~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~ 167 (467)
T TIGR00873 102 YPDT---------ERRYKELKAKG---ILFVGSGVSGGEEGARKG-P-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCT 167 (467)
T ss_pred HHHH---------HHHHHHHHhcC---CEEEcCCCCCCHHHHhcC-C-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceE
Confidence 5432 11122222111 223333333222 22 34 3 234567777777777777754433 12
Q ss_pred ecCChhHHHHHHHHHHH--HHHHHHHHhhhc
Q 022050 273 DNGDLVTHEVMGGLKNV--YAIGAGTIYFLV 301 (303)
Q Consensus 273 ~~~Di~g~e~~~~lkNv--~Ai~~G~~~gl~ 301 (303)
+..+.=.-...|..-|. |+...+++|++.
T Consensus 168 ~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ 198 (467)
T TIGR00873 168 WIGPDGAGHYVKMVHNGIEYGDMQLICEAYD 198 (467)
T ss_pred EECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445666777774 455566666653
No 84
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.04 E-value=5.2e-09 Score=109.24 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=101.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.+++..+... |+ .++|++|++++++++...+ . +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a~~-----------------------~-g~----- 49 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELAVS-----------------------L-GV----- 49 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHHHH-----------------------C-CC-----
Confidence 37899999999999999999988 71 1479999999876542110 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.....++..++++++|+||+|||++.++++++++.+++++ ++ +++...++..
T Consensus 50 ------------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~ 101 (735)
T PRK14806 50 ------------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKG 101 (735)
T ss_pred ------------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCch
Confidence 0112345667788999999999999999999999998876 54 4555545442
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH-------------HHhccCceEEEEe--CChhhHHHHHHHhcCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRP 267 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~-------------ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~ 267 (303)
. +.+.+.+.++.. .++.+|+++- +...+.++.++.. .+.+..+.+.++|+..
T Consensus 102 ~---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 168 (735)
T PRK14806 102 N---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAV 168 (735)
T ss_pred H---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 2 123355555321 1234445542 2223333333332 3445678899999999
Q ss_pred CeEEEec
Q 022050 268 HFTVWDN 274 (303)
Q Consensus 268 g~~~~~~ 274 (303)
|-+++..
T Consensus 169 G~~~~~~ 175 (735)
T PRK14806 169 GADVLHM 175 (735)
T ss_pred CCEEEEc
Confidence 9766554
No 85
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.02 E-value=1.4e-09 Score=98.63 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=117.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|++++||+|.|..+++..+... |...+ .++..+..++..... .+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~~-------------------------~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLGL-------------------------MFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhhh-------------------------hhhc-------
Confidence 6899999999999999999888 85554 455555553321110 0111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
...+.+.+..+.++.+|+++++||++.+.+++.++...+.. +.+++|...|+..+
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 12333334466788999999999999999999998876554 67999999999875
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
. +...++.+ .-+++.+||++..+..|...+..-+ ...++.+.++++|+..|+...+.++.+
T Consensus 102 ~------------l~~~l~~~--~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 102 S------------LESKLSPP--TRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred H------------HHHhcCCC--CceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 2 56666622 2368999999999999875433222 234577999999999999888877654
No 86
>PLN02858 fructose-bisphosphate aldolase
Probab=98.99 E-value=9.9e-09 Score=113.25 Aligned_cols=189 Identities=13% Similarity=0.029 Sum_probs=119.0
Q ss_pred ccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 37 ~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
.|..+.++||+|||.|+||.++|..|+.. | ++|++|+|++++++.+. .
T Consensus 318 ~~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~--------------------------~ 365 (1378)
T PLN02858 318 TMQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRFE--------------------------N 365 (1378)
T ss_pred hccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH--------------------------H
Confidence 34444668999999999999999999998 8 89999999987654311 0
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHH---HHHHHhhccCCCCE
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPV 192 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-~~~~~~vl~---~l~~~l~~~~~~~i 192 (303)
. ......++.+++++||+||++|| +..+++++. .+.+.+.+ +++
T Consensus 366 ~-----------------------------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---g~i 413 (1378)
T PLN02858 366 A-----------------------------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---GAS 413 (1378)
T ss_pred c-----------------------------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---CCE
Confidence 0 12234567788899999999999 677888873 34444555 666
Q ss_pred EEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeE
Q 022050 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 193 ivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~ 270 (303)
+|.++ .+.+.+ .+.+.+.+....+.+..+..|-.-. ....|... ++++++.+..+++..+|+.-+-+
T Consensus 414 vVd~S-TvsP~~---------~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~-imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 414 IVLSS-TVSPGF---------VIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLT-IMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred EEECC-CCCHHH---------HHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCce-EEEECCHHHHHHHHHHHHHHhCc
Confidence 66544 344431 1223332211001123444443321 22234322 34466777778888888766666
Q ss_pred EEe-cCChhHHHHHHHHHHHHHH--HHHHHhhh
Q 022050 271 VWD-NGDLVTHEVMGGLKNVYAI--GAGTIYFL 300 (303)
Q Consensus 271 ~~~-~~Di~g~e~~~~lkNv~Ai--~~G~~~gl 300 (303)
++. ..++-..+..|++-|.+.- .+++++++
T Consensus 483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal 515 (1378)
T PLN02858 483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAM 515 (1378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 5777778999999888643 45555554
No 87
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.98 E-value=1.2e-08 Score=94.96 Aligned_cols=181 Identities=16% Similarity=0.227 Sum_probs=110.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+++|+|+|.|.||..||..|.++ | +.|.+++++...... ... ..+ +.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~----------~~a-----------~~l-gv---- 49 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL----------KAA-----------LEL-GV---- 49 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH----------HHH-----------hhc-Cc----
Confidence 358999999999999999999999 8 888888887753211 000 001 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCH-HHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~-~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
....+.+. .++..++|+||+|||-..+.++++++.+++++ +++|..+++--
T Consensus 50 -------------------------~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~S~K 101 (279)
T COG0287 50 -------------------------IDELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVGSVK 101 (279)
T ss_pred -------------------------ccccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEeccccc
Confidence 01122232 45677899999999999999999999998888 78876554221
Q ss_pred ccccccccccCCHHHHHHhHhCCC-----CccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEe
Q 022050 201 EAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~ 273 (303)
. .+-+.+.++.+.. .|| +.||.--.....+....++... +.+..+.+.+++...|-+++.
T Consensus 102 ~----------~v~~a~~~~~~~~~~~vg~HP---M~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~ 168 (279)
T COG0287 102 S----------SVVEAMEKYLPGDVRFVGGHP---MFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVE 168 (279)
T ss_pred H----------HHHHHHHHhccCCCeeEecCC---CCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 1223344444321 123 2555411233344433333332 345789999999998888876
Q ss_pred cCChhHHHH---HHHHHHHHHHHHH
Q 022050 274 NGDLVTHEV---MGGLKNVYAIGAG 295 (303)
Q Consensus 274 ~~Di~g~e~---~~~lkNv~Ai~~G 295 (303)
.+--..-.. --.|=-++|++.+
T Consensus 169 ~~~eeHD~~~a~vshLpH~~a~al~ 193 (279)
T COG0287 169 MDAEEHDRVMAAVSHLPHAAALALA 193 (279)
T ss_pred cChHHHhHHHHHHHHHHHHHHHHHH
Confidence 543333332 2334444544443
No 88
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.97 E-value=1.1e-08 Score=98.95 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=93.3
Q ss_pred CCceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+||| +|.||..+|..|.++ | ++|++|++++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc-------------------------------------
Confidence 458999999 999999999999998 8 89999998531
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
++.++++.+||+||+|||.....++++++.+ +++ +++|+.+++-
T Consensus 134 -------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~Sv- 177 (374)
T PRK11199 134 -------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLTSV- 177 (374)
T ss_pred -------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECCCc-
Confidence 0123456789999999999999999999988 777 7888766421
Q ss_pred ccccccccccCCHHHHHHhHhCCC---CccEEEEeCCCcHHHHhccCceEEEEe-C-ChhhHHHHHHHhcCCCeEEEecC
Q 022050 201 EAELEAVPRIITPTQMINRATGVP---IENILYLGGPNIASEIYNKEYANARIC-G-AEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~GP~~a~ev~~g~~~~~~~~-~-~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
-. .+.+.+.+..+.+ .|| +.||.... ..+.. ++.+ . +.+..+.+.++++..|.+++..+
T Consensus 178 K~---------~~~~~~~~~~~~~fvg~HP---m~G~~~~~--~~~~~--vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~ 241 (374)
T PRK11199 178 KN---------APLQAMLAAHSGPVLGLHP---MFGPDVGS--LAKQV--VVVCDGRQPEAYQWLLEQIQVWGARLHRIS 241 (374)
T ss_pred cH---------HHHHHHHHhCCCCEEeeCC---CCCCCCcc--cCCCE--EEEcCCCCchHHHHHHHHHHHCCCEEEECC
Confidence 11 1122233333211 122 35554421 22321 2222 2 34567888999999998887654
No 89
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=1.1e-08 Score=96.83 Aligned_cols=186 Identities=16% Similarity=0.061 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhh--hhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhh
Q 022050 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA--EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEI 131 (303)
Q Consensus 54 mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 131 (303)
||+.||..++.+ | ++|+++|++++..+++++ +...+.+... +.+..+....-.. +.
T Consensus 1 MG~giA~~~a~~-G-----~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~g~~~~~-------------~~ 58 (314)
T PRK08269 1 MGQGIALAFAFA-G-----HDVTLIDFKPRDAAGWRALDAEARAEIERT---LAALVALGRIDAA-------------QA 58 (314)
T ss_pred CcHHHHHHHHhC-C-----CeEEEEeCCcccchhhHHHHHHHHHHHHHH---HHHHHHcCCCChh-------------hH
Confidence 799999999999 9 999999999964321100 0000011110 1111111110000 00
Q ss_pred hhccccccCCCCCCCCeEEecC--HHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccCccccccc
Q 022050 132 LKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~t~d--~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~ 207 (303)
+..+.+++++++ ..+++++||+||++||+. .++.++.+|.+.+++ ++++.|+++++....+ .
T Consensus 59 ----------~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~~l-a 124 (314)
T PRK08269 59 ----------DAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVTDL-Q 124 (314)
T ss_pred ----------HHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHHHH-H
Confidence 011236777754 667889999999999997 578899999999998 8999999988877521 0
Q ss_pred cccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHHHHH
Q 022050 208 PRIITPTQMINRATGVPIE---NILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMG 284 (303)
Q Consensus 208 ~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~ 284 (303)
.....+++++.-||..|.+ -+.++.||.+ +.+..+.+..++..-|..++...|.-|.-+..
T Consensus 125 ~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t----------------~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~nr 188 (314)
T PRK08269 125 RHVAHPERFLNAHWLNPAYLMPLVEVSPSDAT----------------DPAVVDRLAALLERIGKVPVVCGPSPGYIVPR 188 (314)
T ss_pred hhcCCcccEEEEecCCccccCceEEEeCCCCC----------------CHHHHHHHHHHHHHcCCcEEEecCCCCcchHH
Confidence 1122233333333322211 1233333332 34455666666666666655555655654444
Q ss_pred HHHHHHH
Q 022050 285 GLKNVYA 291 (303)
Q Consensus 285 ~lkNv~A 291 (303)
.+-..++
T Consensus 189 i~~~~l~ 195 (314)
T PRK08269 189 IQALAMN 195 (314)
T ss_pred HHHHHHH
Confidence 4444333
No 90
>PLN02712 arogenate dehydrogenase
Probab=98.89 E-value=3e-08 Score=102.47 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=100.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|.||..+|..|.+. | ++|.+|+|+... +. ....
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------a~~~---- 410 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DE--------------------------AQKL---- 410 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HH--------------------------HHHc----
Confidence 458999999999999999999988 8 899999998532 11 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHH-HhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~-~aDlVIiaVp~~~~~~vl~~l~~-~l~~~~~~~iivs~~nG 199 (303)
.+...+++++++. .+|+||+|||...+.++++++.. .+++ +++|++++++
T Consensus 411 -------------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv~Sv 462 (667)
T PLN02712 411 -------------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDVLSV 462 (667)
T ss_pred -------------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEECCCc
Confidence 2234466777554 58999999999999999999875 4666 7888887644
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh-cc---CceE---EEEeCC---hhhHHHHHHHhcCCCe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY-NK---EYAN---ARICGA---EKWRKPLAKFLRRPHF 269 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~-~g---~~~~---~~~~~~---~~~~~~i~~lf~~~g~ 269 (303)
-.. +.+.+.++++... -.+...|.+..+.. .| .+.. .....+ .+..+.+.++|...|-
T Consensus 463 K~~----------~~~~~~~~l~~~~--~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 463 KEF----------PRNLFLQHLPQDF--DILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred cHH----------HHHHHHHhccCCC--ceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCC
Confidence 211 2244555554321 13445666655443 12 1110 112222 2345667789988888
Q ss_pred EEEec
Q 022050 270 TVWDN 274 (303)
Q Consensus 270 ~~~~~ 274 (303)
+++..
T Consensus 531 ~vv~m 535 (667)
T PLN02712 531 RMVEM 535 (667)
T ss_pred EEEEe
Confidence 77653
No 91
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.84 E-value=2.5e-08 Score=92.92 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=125.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+.||||.+|+.-...+|.. ++...|+++|.+..++.+||.+. .|.|.+++.
T Consensus 1 ~~kiccigagyvggptcavia~k----cp~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK----CPDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeec----CCceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 57999999999999999888876 34478999999999999888654 367877763
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------hhHHHHHHHHHHHhhcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKER 187 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~---------------~~~~~vl~~l~~~l~~~ 187 (303)
|++.. +.+ .++.+++|.++++.++|+||+.|.. .+.+...+.|+.+-..
T Consensus 56 -------evv~~--crg------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQ--CRG------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHH--hcC------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 22221 111 3688999999999999999998833 2567777777776554
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCC--CCccEEEEeCCCcHHHHhc----cCceEEEEeCCh-----hh
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV--PIENILYLGGPNIASEIYN----KEYANARICGAE-----KW 256 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~-----~~ 256 (303)
+++++ --+.++. ...+-|...+.. +...+-+++.|.|..|... -.|..+.+++.+ +.
T Consensus 120 --~kivv-ekstvpv---------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIVV-EKSTVPV---------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEEE-eeccccc---------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 45544 2222222 123445555532 2234679999999776432 123344554322 23
Q ss_pred HHHHHHHhcCC-CeEEEecCChhHHHHHHHHHHHH
Q 022050 257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 257 ~~~i~~lf~~~-g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.+.+..++.+= .-.-.++.+.-..|+++...|.+
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaanaf 222 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANAF 222 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHHH
Confidence 45555555431 11223466777889999888865
No 92
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.82 E-value=5.1e-09 Score=86.48 Aligned_cols=97 Identities=26% Similarity=0.478 Sum_probs=60.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEE-EecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
...+||+|||+|.+|..++..|.++ | +.|.. +.|+.++.++.. ..+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a~----------------------~~~~---- 55 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERAA----------------------AFIG---- 55 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHHH----------------------C--T----
T ss_pred CCccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCcccccccc----------------------cccc----
Confidence 3459999999999999999999999 8 77765 567765443211 0111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH--hhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~--l~~~~~~~iivs~~ 197 (303)
...+ .++.+.++++|++|++||...+.+++++|..+ +.+ +++|+.++
T Consensus 56 ---------------------------~~~~-~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtS 104 (127)
T PF10727_consen 56 ---------------------------AGAI-LDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTS 104 (127)
T ss_dssp ---------------------------T------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-
T ss_pred ---------------------------cccc-cccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECC
Confidence 1112 34556788999999999999999999999976 555 67777665
Q ss_pred ccC
Q 022050 198 KGV 200 (303)
Q Consensus 198 nGi 200 (303)
-.+
T Consensus 105 Ga~ 107 (127)
T PF10727_consen 105 GAL 107 (127)
T ss_dssp SS-
T ss_pred CCC
Confidence 333
No 93
>PLN02712 arogenate dehydrogenase
Probab=98.81 E-value=1e-07 Score=98.56 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=98.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||..+|..|.+. | ++|++|+|+... +. ...+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------A~~~---- 93 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA--------------------------ARSL---- 93 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH--------------------------HHHc----
Confidence 358999999999999999999998 8 899999998432 10 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHH-HHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~-~~l~~~~~~~iivs~~nG 199 (303)
++...+++.+++ +++|+||+|||...+.++++++. +++++ +++|+.+. +
T Consensus 94 -------------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~-S 144 (667)
T PLN02712 94 -------------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL-S 144 (667)
T ss_pred -------------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC-C
Confidence 233455676644 56999999999999999999986 56776 67777664 1
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEE----eCCCcHHHHhccCceEEE--EeCCh----hhHHHHHHHhcCCCe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYL----GGPNIASEIYNKEYANAR--ICGAE----KWRKPLAKFLRRPHF 269 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~----~GP~~a~ev~~g~~~~~~--~~~~~----~~~~~i~~lf~~~g~ 269 (303)
+- ..+.+.+.+.++... . .+- .||........+.+.... ...++ +.++.+.++|...|.
T Consensus 145 vK---------~~~~~~l~~~l~~~~-~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa 213 (667)
T PLN02712 145 VK---------EFAKNLLLDYLPEDF-D-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGC 213 (667)
T ss_pred Cc---------HHHHHHHHHhcCCCC-e-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCC
Confidence 11 122344555554321 1 222 355543323334332111 11222 235667799998898
Q ss_pred EEEecC
Q 022050 270 TVWDNG 275 (303)
Q Consensus 270 ~~~~~~ 275 (303)
+++..+
T Consensus 214 ~v~~ms 219 (667)
T PLN02712 214 KMVEMS 219 (667)
T ss_pred EEEEeC
Confidence 887654
No 94
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.79 E-value=2.7e-07 Score=89.12 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=97.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||. |.||..||..|.+..| ++|+.+|+..+.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~~------------------------------------- 41 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADPG------------------------------------- 41 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCccc-------------------------------------
Confidence 479999999 9999999999986424 788888875210
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH---hhccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~---l~~~~~~~iivs~~n 198 (303)
..++.+++++||+||+|||...+.++++++.++ +++ +++|..+.+
T Consensus 42 -----------------------------~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVgS 89 (370)
T PRK08818 42 -----------------------------SLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVTS 89 (370)
T ss_pred -----------------------------cCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECCC
Confidence 023456678999999999999999999999987 566 676654331
Q ss_pred cCccccccccccCCHHHHHHhH----hCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEec
Q 022050 199 GVEAELEAVPRIITPTQMINRA----TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~----l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
- -. .+-+.+... .| .|| +.||... ...++.+..++.....+..+.++++++..|.++...
T Consensus 90 v-K~---------~i~~~~~~~~~~fVG--~HP---MaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 90 I-KQ---------APVAAMLASQAEVVG--LHP---MTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred C-cH---------HHHHHHHhcCCCEEe--eCC---CCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEc
Confidence 1 10 011112111 11 133 2555443 234565544443333344678899999888888765
Q ss_pred CChhHHHHHHHH
Q 022050 275 GDLVTHEVMGGL 286 (303)
Q Consensus 275 ~Di~g~e~~~~l 286 (303)
+=-..-+..+..
T Consensus 154 ~aeeHD~~~A~v 165 (370)
T PRK08818 154 TPEHHDRVMALV 165 (370)
T ss_pred CHHHHHHHHHHH
Confidence 433333444433
No 95
>PLN02858 fructose-bisphosphate aldolase
Probab=98.72 E-value=2.6e-07 Score=102.23 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=116.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||++||.|.||..+|..|+++ | ++|++|+|++++.+++..
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~-------------------------------- 45 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKFCE-------------------------------- 45 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------------------------------
Confidence 47899999999999999999999 9 999999999876643210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~n 198 (303)
.......++.+++++||+||+++|.. .+++++ +.+.+.+.+ ++++|.++
T Consensus 46 -----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S- 98 (1378)
T PLN02858 46 -----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS- 98 (1378)
T ss_pred -----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-
Confidence 02334567888889999999999985 567776 345555555 66666443
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEe-cC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NG 275 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~-~~ 275 (303)
.+.+.+ .+.+.+.+......+..+-.|-.-. ....|... +.++++.+..++++.+|+.-+-+++. ..
T Consensus 99 Ti~p~~---------~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G 168 (1378)
T PLN02858 99 TILPLQ---------LQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEG 168 (1378)
T ss_pred CCCHHH---------HHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecC
Confidence 444431 1223333311110122344443322 12234322 34467777788888888876766653 46
Q ss_pred ChhHHHHHHHHHHHHHH--HHHHHhhhc
Q 022050 276 DLVTHEVMGGLKNVYAI--GAGTIYFLV 301 (303)
Q Consensus 276 Di~g~e~~~~lkNv~Ai--~~G~~~gl~ 301 (303)
+.=.-...|++-|.+.. ..++++++.
T Consensus 169 ~~G~g~~~KL~nN~l~~~~~~a~aEAl~ 196 (1378)
T PLN02858 169 EIGAGSKVKMVNELLEGIHLVASAEAMA 196 (1378)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788888887543 245666553
No 96
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.64 E-value=3.9e-07 Score=85.57 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
||||+|||+|.||..+|..++.. | . +|.++|++++.++.... -+.. ...
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~~~~-----dl~~---------------~~~---- 51 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQGKAL-----DIAE---------------AAP---- 51 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHHHHH-----HHHh---------------hhh----
Confidence 58999999999999999999987 7 4 89999998876432100 0000 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l~ 185 (303)
. .. ....++.++|.+ ++++||+||+++ |. ..++++++++.++.+
T Consensus 52 -~-~~-----------------~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 52 -V-EG-----------------FDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred -h-cC-----------------CCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 00 002466667775 579999999986 33 246777888887765
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+.+++..+|...
T Consensus 112 ----~~~viv~tNP~d 123 (307)
T PRK06223 112 ----DAIVIVVTNPVD 123 (307)
T ss_pred ----CeEEEEecCcHH
Confidence 466777777543
No 97
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.61 E-value=1.9e-07 Score=89.04 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=71.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-|+|+|||+|.||.++|..|+.. | ++|..|+++++... .
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~------- 184 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D------- 184 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h-------
Confidence 37999999999999999999987 8 89999999864210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHH-HHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKE-VFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~-vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
....+.++++++++||+|++++|... ... +.+++...+++ ++++|.+..|-
T Consensus 185 ------------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG~ 237 (330)
T PRK12480 185 ------------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARGA 237 (330)
T ss_pred ------------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCcc
Confidence 01123467888999999999999874 333 44566677777 89999999997
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 238 ~vd 240 (330)
T PRK12480 238 VIN 240 (330)
T ss_pred ccC
Confidence 765
No 98
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.58 E-value=1.1e-06 Score=81.68 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=106.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.++|++||.|+||..++..|.++ | |.|++|+|+.++.+.+.+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~~~------------------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQEA------------------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHHHh-------------------------------
Confidence 58999999999999999999999 9 9999999998866532111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhh---ccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWK---ERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~---~~~~~~iivs~~n 198 (303)
.-++..++.|..+++|+||..||.. +.++++-.-...+. + +.....-++
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~---g~~~~vDmS 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRP---GKKATVDMS 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccC---CCceEEecc
Confidence 1223456788889999999999875 45665544222222 2 222211222
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+.+. .+..|++..-.. ....+-.|-.-..-. +|..+ +.+++|++..+....+|..-|-.+++--.
T Consensus 131 Tidp~---------~s~ei~~~i~~~--~~~~vDAPVSGg~~~A~~G~Lt-imagGde~~~~~~~~~~~~mGk~~~~~G~ 198 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISNK--GGRFVDAPVSGGVKGAEEGTLT-IMAGGDEALFEAASPVFKLMGKNVVFLGG 198 (327)
T ss_pred ccCHH---------HHHHHHHHHHhC--CCeEEeccccCCchhhhcCeEE-EEecCcHHHHHHHHHHHHHhcceEEEecc
Confidence 33333 123344433211 122344443322211 23222 23467778888888999888866665444
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHhhh
Q 022050 277 LVTHEVMGGLKNVYAI--GAGTIYFL 300 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai--~~G~~~gl 300 (303)
.=.-+-++..-|++.= -.|++|||
T Consensus 199 ~GnG~~~Kl~nnm~~g~~M~g~aEal 224 (327)
T KOG0409|consen 199 VGNGQAAKLCNNMLLGSSMVGLAEAL 224 (327)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554321 13455554
No 99
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.54 E-value=1.2e-06 Score=82.62 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=71.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|.||+.+|..++.. | + +|+++|++++..+. + .+. .+.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~----a~d-------------~~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---K----ALD-------------MYEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---H----HHh-------------hhhhhhc----
Confidence 7999999999999999999998 7 5 79999997663221 0 000 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~ 186 (303)
. .....+++++|.++ +++||+||+++.. ..++++.++|.++.+
T Consensus 52 --~-----------------~~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 --G-----------------GFDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred --c-----------------CCCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 00125777788876 7899999999962 235667777777653
Q ss_pred cCCCCEEEEeeccCcc
Q 022050 187 RITVPVIISLAKGVEA 202 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~ 202 (303)
+.+++..+|....
T Consensus 111 ---~~~iIv~tNP~di 123 (305)
T TIGR01763 111 ---NPIIVVVSNPLDA 123 (305)
T ss_pred ---CeEEEEecCcHHH
Confidence 5788888886543
No 100
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.46 E-value=1.2e-06 Score=74.93 Aligned_cols=94 Identities=34% Similarity=0.451 Sum_probs=65.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.++|+|||.|+.|.+-|.-|.++ | .+|++..|... ..++..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~-------------------------------- 45 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK-------------------------------- 45 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH--------------------------------
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH--------------------------------
Confidence 37999999999999999999999 9 89999988876 222110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+| +++ .+..|+++.||+|++.+|.....+++ ++|.+++++ ++.+ .+.-|+
T Consensus 46 -----------~~G------------f~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~~L-~fahGf 97 (165)
T PF07991_consen 46 -----------ADG------------FEV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GATL-VFAHGF 97 (165)
T ss_dssp -----------HTT-------------EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T-EE-EESSSH
T ss_pred -----------HCC------------Cee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CCEE-EeCCcc
Confidence 012 222 35778999999999999999999999 889999998 6654 466666
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 98 ni 99 (165)
T PF07991_consen 98 NI 99 (165)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 101
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.46 E-value=2e-07 Score=90.46 Aligned_cols=117 Identities=18% Similarity=0.233 Sum_probs=78.6
Q ss_pred ceEEEECCChHHHHH-HHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~ai-A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+++|+|+||+++ +..|++. | ++|++++++++.+++++.++++.+. ..+.. +
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v~----------------~~~~~---~ 55 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQVI----------------VVGEN---E 55 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEEE----------------EecCC---C
Confidence 799999999999855 7788887 8 8999999998888887766542111 10000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEecCchhHHHHHHHHHHHhhccC-----CCCE
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~d~~~---a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~-----~~~i 192 (303)
+.. .+ ..+... .+.++ ++.++|+|.++|++...+.+...|.+.+.++. +.-.
T Consensus 56 ~~~-----------~i-------~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 56 QVE-----------TV-------SNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred cEE-----------EE-------eeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 000 00 022222 12122 34588999999999998888988888776521 1227
Q ss_pred EEEeeccCccc
Q 022050 193 IISLAKGVEAE 203 (303)
Q Consensus 193 ivs~~nGi~~~ 203 (303)
|+|+.||+.+.
T Consensus 118 VlsceN~~~ng 128 (381)
T PRK02318 118 IIACENMIRGT 128 (381)
T ss_pred EEecCChhhHH
Confidence 89999999986
No 102
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.45 E-value=2e-06 Score=81.68 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=68.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.||+.+|..++.. |. .+|.|+|++++.++. +. +...+ ....
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~~~---~~----ld~~~------------~~~~------ 56 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIPQG---KA----LDISH------------SNVI------ 56 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchhhH---HH----HHHHh------------hhhc------
Confidence 7999999999999999999988 72 379999999986431 11 11000 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------------hhHHHHHHHHHH
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------------TETKEVFEEISR 182 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~---------------------~~~~~vl~~l~~ 182 (303)
. ....++..++|.+ ++++||+||++.-. ..+.++++++.+
T Consensus 57 --~----------------~~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~ 117 (321)
T PTZ00082 57 --A----------------GSNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK 117 (321)
T ss_pred --c----------------CCCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0002466667875 68999999997611 126677777777
Q ss_pred HhhccCCCCEEEEeeccCc
Q 022050 183 YWKERITVPVIISLAKGVE 201 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~ 201 (303)
+.+ +..++..+|...
T Consensus 118 ~~p----~a~~iv~sNP~d 132 (321)
T PTZ00082 118 YCP----NAFVIVITNPLD 132 (321)
T ss_pred HCC----CeEEEEecCcHH
Confidence 765 456666776543
No 103
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.44 E-value=9.5e-07 Score=86.93 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=55.1
Q ss_pred ceEEEECCChHHHHHHH--HHH----HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 44 LRIVGVGAGAWGSVFTA--MLQ----DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~--~La----~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
+||+|||+|+||.+.+. .++ .+ | ++|.+||++++.++.+... +. .+++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~-g-----~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~ 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELS-G-----STIALMDIDEERLETVEIL-----AK-------------KIVEEL 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCC-C-----CEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc
Confidence 58999999999998766 343 33 4 7999999999877653321 11 011111
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~ 170 (303)
.. ..++.+++|+++++++||+||++++.
T Consensus 57 -------~~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 57 -------GA------------------PLKIEATTDRREALDGADFVINTIQV 84 (423)
T ss_pred -------CC------------------CeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence 00 02577899999999999999999985
No 104
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.43 E-value=3.5e-06 Score=70.70 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=75.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+ |.+|+++|..|... +.. .++.|+|++++.++... +. +.+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~g~a-------~D---------------l~~~~~~-- 52 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAEGEA-------LD---------------LSHASAP-- 52 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHHHHH-------HH---------------HHHHHHG--
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccceeee-------hh---------------hhhhhhh--
Confidence 79999999 99999999999998 632 47999999987554311 10 1111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch--------------hHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~--------------~~~~vl~~l~~~l~~ 186 (303)
. ..+..+..+..+++++||+||++. |.. .++++.+++.++.+
T Consensus 53 ---~------------------~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p- 110 (141)
T PF00056_consen 53 ---L------------------PSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP- 110 (141)
T ss_dssp ---S------------------TEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred ---c------------------ccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-
Confidence 0 012344445566789999999987 221 35556666666653
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCC
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~ 225 (303)
+.+++..+|.+.. ...++.+..+.+.
T Consensus 111 ---~~~vivvtNPvd~----------~t~~~~~~s~~~~ 136 (141)
T PF00056_consen 111 ---DAIVIVVTNPVDV----------MTYVAQKYSGFPP 136 (141)
T ss_dssp ---TSEEEE-SSSHHH----------HHHHHHHHHTSSG
T ss_pred ---ccEEEEeCCcHHH----------HHHHHHHhhCcCc
Confidence 5778878876553 3456666666543
No 105
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.42 E-value=5.5e-06 Score=78.41 Aligned_cols=95 Identities=26% Similarity=0.392 Sum_probs=70.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|+||.++|..|... | ++|++|++.....+. ...
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------ 57 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------ 57 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH------
Confidence 37899999999999999999998 8 899999875432110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~-~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
....+ .+++++++.||+|++.+|....+.++. ++.+.+++ ++ ++..+-|+.
T Consensus 58 -----------------------~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfn 109 (335)
T PRK13403 58 -----------------------DGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFN 109 (335)
T ss_pred -----------------------cCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcc
Confidence 02223 368889999999999999876677774 57777877 55 455777877
Q ss_pred cc
Q 022050 202 AE 203 (303)
Q Consensus 202 ~~ 203 (303)
..
T Consensus 110 i~ 111 (335)
T PRK13403 110 IH 111 (335)
T ss_pred ee
Confidence 64
No 106
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.39 E-value=4e-06 Score=79.55 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..+|..++.. |. .++.|+|++++.++... +.-.+ ... .
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g~~-------lDl~~-----------~~~-~---- 55 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQGKA-------LDLKH-----------FST-L---- 55 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchhHH-------HHHhh-----------hcc-c----
Confidence 347999999999999999999887 62 47999999987654210 11000 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l~ 185 (303)
. .....+..++|.+ ++++||+||++. |. ..+.++++++.++.+
T Consensus 56 ----~----------------~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p 114 (319)
T PTZ00117 56 ----V----------------GSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114 (319)
T ss_pred ----c----------------CCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 0001455567776 689999999999 33 236678888888765
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+.+++..+|...
T Consensus 115 ----~a~vivvsNP~d 126 (319)
T PTZ00117 115 ----NAFVICVTNPLD 126 (319)
T ss_pred ----CeEEEEecChHH
Confidence 466666676543
No 107
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.38 E-value=1.2e-06 Score=83.54 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=68.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-|+|+|||+|.||.++|..|++..| .+|..|+++..... ..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~~----------------------------~~------ 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAKA----------------------------AT------ 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHhH----------------------------Hh------
Confidence 4899999999999999999954325 67888887653210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhH-HHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET-KEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~-~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+...+++++++++||+|++++|.... +.++ ++..+.+++ ++++|.+++|.
T Consensus 187 ------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG~ 239 (332)
T PRK08605 187 ------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARGS 239 (332)
T ss_pred ------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCCc
Confidence 122335688889999999999998753 3333 334555777 88999999997
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 240 ~vd 242 (332)
T PRK08605 240 LVD 242 (332)
T ss_pred ccC
Confidence 765
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.33 E-value=5.4e-06 Score=78.18 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=71.4
Q ss_pred ceEEEECCCh--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 44 ~kI~VIGaG~--------------------mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
|||.|.|+|+ -|.++|..|+++ | |+|++|+|+++..+.-..+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e~~e------------ 62 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDDLWK------------ 62 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhH------------
Confidence 7889999986 378999999999 9 9999999987644210000
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl~~l~~ 182 (303)
.+.. .+...++++.++++++|+||+++|... .+++++.+.+
T Consensus 63 ---------~Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 63 ---------KVED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ---------HHHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 0110 134456778889999999999999874 7788888888
Q ss_pred HhhccCCCCEEEEeeccCcc
Q 022050 183 YWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~~ 202 (303)
.+++ ++++|.++ .+++
T Consensus 105 ~L~~---GaIVID~S-TIsP 120 (341)
T TIGR01724 105 HVPE---NAVICNTC-TVSP 120 (341)
T ss_pred cCCC---CCEEEECC-CCCH
Confidence 7777 77766443 4444
No 109
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.29 E-value=5.4e-06 Score=77.77 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=66.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
|+|||+|.||..+|..++.. | . +|+++|++++.++... +...+ ... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~~g~~-------~dl~~-----------~~~-~------- 48 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLPQGKA-------LDISQ-----------AAP-I------- 48 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHHHHHH-------HHHHH-----------hhh-h-------
Confidence 68999999999999999988 7 5 8999999987442210 10000 000 0
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~~~ 188 (303)
. ....+++.++|.+ ++++||+||+++-. ..++++++++.++.++
T Consensus 49 -~----------------~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~-- 108 (300)
T cd01339 49 -L----------------GSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPN-- 108 (300)
T ss_pred -c----------------CCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC--
Confidence 0 0002466667764 58999999998721 1366788888887653
Q ss_pred CCCEEEEeeccCc
Q 022050 189 TVPVIISLAKGVE 201 (303)
Q Consensus 189 ~~~iivs~~nGi~ 201 (303)
.+++..+|...
T Consensus 109 --~~iIv~sNP~d 119 (300)
T cd01339 109 --AIVIVVTNPLD 119 (300)
T ss_pred --eEEEEecCcHH
Confidence 56666666543
No 110
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.25 E-value=1.6e-05 Score=73.16 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=72.0
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 46 I~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
|+|||+ |.||..+|..|+.. |.+.. .+|.++|+++++++....+ ++. ...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~~-~el~L~D~~~~~l~~~~~d-----l~~-------------~~~--------- 51 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLLA-IELVLYDIDEEKLKGVAMD-----LQD-------------AVE--------- 51 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCcc-eEEEEEeCCcccchHHHHH-----HHH-------------hhh---------
Confidence 689999 99999999999987 52111 5899999999776542211 110 000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~~~ 188 (303)
.. ...++.+++|+.+++++||+||++.-. ..++++++++.++.+
T Consensus 52 ~~-----------------~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 52 PL-----------------ADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred hc-----------------cCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 00 002577788888889999999996622 146777888887764
Q ss_pred CCCEEEEeeccCcc
Q 022050 189 TVPVIISLAKGVEA 202 (303)
Q Consensus 189 ~~~iivs~~nGi~~ 202 (303)
+++++..+|....
T Consensus 112 -~a~~i~~tNP~d~ 124 (263)
T cd00650 112 -DAWIIVVSNPVDI 124 (263)
T ss_pred -CeEEEEecCcHHH
Confidence 5777777776543
No 111
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.22 E-value=1.9e-05 Score=78.55 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhh
Q 022050 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (303)
Q Consensus 54 mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 133 (303)
||..+|..|+++ | ++|.+|+|++++.+.+.+. . -++
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l~~~--------~-------------g~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEFLAE--------E-------------GKG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHh--------h-------------CCC-----------------
Confidence 899999999999 9 9999999999876542110 0 000
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccc
Q 022050 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (303)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~ 209 (303)
.++....+++++++. +|+||++||.. .++++++.|.+.+.+ +.+||...+.....+
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 034556778887764 89999999996 689999999999887 788887776544331
Q ss_pred cCCHHHHHHhHhCCCCccEEEEeCCCcHHH-Hh-ccCceEEEEeCChhhHHHHHHHhcCCCeE------E-EecCChhHH
Q 022050 210 IITPTQMINRATGVPIENILYLGGPNIASE-IY-NKEYANARICGAEKWRKPLAKFLRRPHFT------V-WDNGDLVTH 280 (303)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------~-~~~~Di~g~ 280 (303)
+...+.+... .+..+..|-.-.+ .+ .| + .+.++++.+..+.++.+|+.-+-+ | ....+.=.-
T Consensus 97 -----~~~~~~l~~~--Gi~fvdapVSGG~~gA~~G-~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaG 167 (459)
T PRK09287 97 -----IRREKELAEK--GIHFIGMGVSGGEEGALHG-P-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAG 167 (459)
T ss_pred -----HHHHHHHHhc--CCeEEecCCCCCHHHHhcC-C-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHH
Confidence 1112222111 1122333332222 12 34 3 345677777777777777653333 2 233344334
Q ss_pred HHHHHHHHH--HHHHHHHHhhhc
Q 022050 281 EVMGGLKNV--YAIGAGTIYFLV 301 (303)
Q Consensus 281 e~~~~lkNv--~Ai~~G~~~gl~ 301 (303)
...|..-|. |+...+++|++.
T Consensus 168 h~vKmvhN~ie~~~mq~iaEa~~ 190 (459)
T PRK09287 168 HYVKMVHNGIEYGDMQLIAEAYD 190 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777774 556666666653
No 112
>PRK15076 alpha-galactosidase; Provisional
Probab=98.19 E-value=1.3e-05 Score=79.01 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=52.8
Q ss_pred CceEEEECCChHHHHHHH--HHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|+||.+.+. .++...+ +.. .+|+|+|+++++++.... .++. .....
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~-l~~-~evvLvDid~er~~~~~~-----l~~~-------------~~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPA-LRD-AEIALMDIDPERLEESEI-----VARK-------------LAESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCcc-CCC-CEEEEECCCHHHHHHHHH-----HHHH-------------HHHhc---
Confidence 479999999999977766 5552212 211 589999999987653221 1111 01100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV 168 (303)
.. ..++.+++|..+++++||+||+++
T Consensus 58 ----~~------------------~~~i~~ttD~~eal~dADfVv~ti 83 (431)
T PRK15076 58 ----GA------------------SAKITATTDRREALQGADYVINAI 83 (431)
T ss_pred ----CC------------------CeEEEEECCHHHHhCCCCEEeEee
Confidence 00 025778899888999999999987
No 113
>PLN02602 lactate dehydrogenase
Probab=98.15 E-value=3.1e-05 Score=74.47 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=45.7
Q ss_pred cCCchhhhhhHHHHHhccCCCCC-----ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 21 TNGSLEERLDELRRLMGKAEGDP-----LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-----~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
-||.+- +.+.+-.||.....+| +||+|||+|.+|+++|..++.. |.. .++.|+|++++.++
T Consensus 11 ~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 11 GPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred ccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 555555 6666666666655433 6999999999999999999887 632 37999999987654
No 114
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.14 E-value=1.5e-05 Score=73.67 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=58.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||..++..+.+. + . ..+ +.++++++++.+.+. ..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~a-------------------------~~----- 46 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENLA-------------------------SK----- 46 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHHH-------------------------Hh-----
Confidence 48999999999999999998865 3 0 134 567888876543210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
......+++++.+.++|+|++|+|+....+...++..
T Consensus 47 ------------------------~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 47 ------------------------TGAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred ------------------------cCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 0133456787777889999999999888777766543
No 115
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.13 E-value=4.6e-05 Score=62.40 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=72.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|+|+ |.||..++..+.+..+ +++ -.++++++.... .....+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~g------------------------~d~g~~~--- 48 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKVG------------------------KDVGELA--- 48 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTTT------------------------SBCHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCccccc------------------------chhhhhh---
Confidence 79999999 9999999999998424 664 456777632110 0011100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+ .. ...+.+++|++++++.+|++|-++-+....+.++....+ +..+|+.|.|+.
T Consensus 49 ~---~~-----------------~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 49 G---IG-----------------PLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp T---SS-----------------T-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred C---cC-----------------CcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 00 025667899999988999999999776666666655443 567888888987
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCc
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~ 236 (303)
.+. .+.+++.-. ...++..|||
T Consensus 103 ~~~---------~~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQ---------IDELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHH---------HHHHHHHTT----TSEEEE-SSS
T ss_pred HHH---------HHHHHHHhc----cCCEEEeCCC
Confidence 542 133444332 1346677775
No 116
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.11 E-value=4.2e-05 Score=72.04 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=33.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+||+|||+|.+|.++|..|+.. |.. ++|.++|++++.++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~~ 40 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAEG 40 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhhH
Confidence 4899999999999999999988 721 489999999887643
No 117
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.08 E-value=5.4e-06 Score=74.43 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=86.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+.||+|+|+|-+|+++|..||.. | ++|.+||..++++...-++ ++.. ++++-+.+ .+++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~ALen-----~~Ke---l~~Lee~g-~lrG------ 61 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQTALEN-----VEKE---LRKLEEHG-LLRG------ 61 (313)
T ss_pred ccceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHHHHHH-----HHHH---HHHHHHhh-hhcc------
Confidence 46899999999999999999999 9 8999999999877542211 1111 11111111 1111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++| .+..+..|+++.|++++|=.|=.|+|+. ....++++|...+.+ .+++.|.++.+
T Consensus 62 --nlsa~e-------------qla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTSt~ 123 (313)
T KOG2305|consen 62 --NLSADE-------------QLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTSTF 123 (313)
T ss_pred --CccHHH-------------HHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEecccccc
Confidence 222221 1224677899999999999999999997 578899999998887 67778888777
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
.++
T Consensus 124 mpS 126 (313)
T KOG2305|consen 124 MPS 126 (313)
T ss_pred ChH
Confidence 765
No 118
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.04 E-value=3.5e-05 Score=71.56 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=56.7
Q ss_pred CceEEEECCChHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||..++..|... .+ +++. +|+|++++.+... ..+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~~a-------------------------~~~--- 52 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHADFI-------------------------WGL--- 52 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHHHH-------------------------Hhc---
Confidence 48999999999999999998762 13 6665 7898876543210 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
......+++++.+.++|+|++++|.....++..+..
T Consensus 53 -------------------------g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL 88 (271)
T PRK13302 53 -------------------------RRPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVL 88 (271)
T ss_pred -------------------------CCCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHH
Confidence 001234567777788999999999988777765543
No 119
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.03 E-value=8.1e-05 Score=68.47 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=64.2
Q ss_pred HHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEE---EE
Q 022050 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENIL---YL 231 (303)
Q Consensus 155 ~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---v~ 231 (303)
.++++++|+||+|||...+.++++++.+++++ +++|+.++ ++-. .+-+.+.+.++.. ..++ =+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK~---------~~~~~~~~~~~~~-~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVKA---------PIVEAMERLLPEG-VRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-CH---------HHHHHHHHHHTSS-GEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCCH---------HHHHHHHHhcCcc-cceeecCCC
Confidence 45789999999999999999999999999887 77776554 2211 1234455655521 1111 12
Q ss_pred eCC-----CcHH-HHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecC
Q 022050 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 232 ~GP-----~~a~-ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.|| ..+. +...|.+..++... +.+..+.+.+++...|.++...+
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMD 157 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcC
Confidence 444 3332 34567665555533 34578999999999998887653
No 120
>PRK07574 formate dehydrogenase; Provisional
Probab=98.02 E-value=3.3e-05 Score=75.15 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=70.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..|..- | .+|..|+|.....+. ...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------ 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------ 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh------
Confidence 37999999999999999999876 7 899999987632110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
.++....+++++++.||+|++++|-. .++.++. +....+++ ++++|.+..|=
T Consensus 234 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 234 -----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred -----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 02333357888899999999999975 4666663 34555676 88999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 288 iVD 290 (385)
T PRK07574 288 IVD 290 (385)
T ss_pred hhh
Confidence 543
No 121
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.98 E-value=6.5e-05 Score=70.91 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||+|.+|+++|..|+.. |.. .+|.++|+++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 7999999999999999999998 721 47999999987653
No 122
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.96 E-value=0.00011 Score=69.79 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..+||+|||+|.+|+++|..++.. |.. .++.|+|++++.++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~ 45 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAE 45 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhH
Confidence 347999999999999999999988 731 27999999887654
No 123
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.95 E-value=0.00014 Score=58.25 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=64.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||+|.+|......+... . +..++. ++++++++.+++. +.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~~-------------------------~~------ 45 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAFA-------------------------EK------ 45 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHHH-------------------------HH------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHHH-------------------------HH------
Confidence 6899999999999999888775 2 115544 7888876554311 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.++...+|.++.++ +.|+|++++|+....+.+.+.... +.. |-+-|.+
T Consensus 46 -----------------------~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~~-v~~EKP~ 95 (120)
T PF01408_consen 46 -----------------------YGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GKH-VLVEKPL 95 (120)
T ss_dssp -----------------------TTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TSE-EEEESSS
T ss_pred -----------------------hcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CCE-EEEEcCC
Confidence 12446678888776 789999999999887777765542 333 3456665
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 96 ~~ 97 (120)
T PF01408_consen 96 AL 97 (120)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 124
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.94 E-value=3.2e-05 Score=73.85 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=69.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+..- | .+|..|+|+...... ..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~----- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEAE---------------------------KE----- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhhH---------------------------HH-----
Confidence 348999999999999999999877 8 899999997642100 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
..... .++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|
T Consensus 191 ------------------------~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg 242 (333)
T PRK13243 191 ------------------------LGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARG 242 (333)
T ss_pred ------------------------cCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCc
Confidence 01222 36778889999999999975 355555 445556777 7888888877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
-..+
T Consensus 243 ~~vd 246 (333)
T PRK13243 243 KVVD 246 (333)
T ss_pred hhcC
Confidence 5544
No 125
>PLN03139 formate dehydrogenase; Provisional
Probab=97.93 E-value=5.5e-05 Score=73.63 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=70.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..|..- | .+|..|+++....+. ...
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~------ 240 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE------ 240 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh------
Confidence 47999999999999999999876 7 899999987531110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+....++++.+++||+|++++|.. .++.++ +++...+++ ++++|.+..|=
T Consensus 241 -----------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 294 (386)
T PLN03139 241 -----------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARGA 294 (386)
T ss_pred -----------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCCc
Confidence 02333457888889999999999974 456665 345556677 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 295 iVD 297 (386)
T PLN03139 295 IMD 297 (386)
T ss_pred hhh
Confidence 443
No 126
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.90 E-value=5.7e-05 Score=71.53 Aligned_cols=95 Identities=27% Similarity=0.383 Sum_probs=69.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|+||..+|..|..- | .+|..|++..+... +..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~~-----------------------------~~~---- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSWP-----------------------------GVQ---- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCCC-----------------------------Cce----
Confidence 37999999999999999999877 8 89999998653211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++. +....+++ ++++|.+..|-
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 0101246788899999999999975 4566653 34455676 78999888885
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 230 vVd 232 (312)
T PRK15469 230 HVV 232 (312)
T ss_pred ccC
Confidence 554
No 127
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.90 E-value=0.00023 Score=66.53 Aligned_cols=94 Identities=34% Similarity=0.448 Sum_probs=71.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||.|+=|.+=|.-|-.+ | .+|++--|.... .++. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~kA----------------------------~----- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKKA----------------------------K----- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHHH----------------------------H-----
Confidence 6999999999999999999999 9 788876665543 2110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~-~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+ .+++ .+.++|++.||+|++-+|.....++++ +|.|.+++ +. .+..+-|+.
T Consensus 60 ----------~d------------Gf~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------ED------------GFKV-YTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hc------------CCEe-ecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 01 2333 357789999999999999999999998 89999997 55 455677776
Q ss_pred cc
Q 022050 202 AE 203 (303)
Q Consensus 202 ~~ 203 (303)
.-
T Consensus 113 ih 114 (338)
T COG0059 113 IH 114 (338)
T ss_pred ee
Confidence 53
No 128
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.89 E-value=0.00015 Score=68.68 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=33.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+||+|||+|.+|+++|..++.. |. . .++.|+|++++.++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~-~--~el~LiD~~~~~~~ 42 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GL-A--DELVLVDVVEDKLK 42 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC-C--CEEEEEeCCccHHH
Confidence 47999999999999999999887 62 1 47999999987554
No 129
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.87 E-value=5.3e-05 Score=65.79 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=65.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.+|..+|..+..- | .+|..|+|....... ...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 77 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE----- 77 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH-----
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc-----
Confidence 358999999999999999999876 8 899999999853210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
... ...++++.++.||+|++++|... .+.++ ++....+++ ++++|.+..|
T Consensus 78 ------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~aRG 129 (178)
T PF02826_consen 78 ------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVARG 129 (178)
T ss_dssp ------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESSSG
T ss_pred ------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEeccch
Confidence 023 23478888999999999999642 23332 223333666 7899988877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=..+
T Consensus 130 ~~vd 133 (178)
T PF02826_consen 130 ELVD 133 (178)
T ss_dssp GGB-
T ss_pred hhhh
Confidence 5443
No 130
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.86 E-value=6.7e-05 Score=62.79 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..++|+|+|+|.||.+++..|++. |. ++|++|+|++++.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~----~~v~v~~r~~~~~~ 57 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GA----AKIVIVNRTLEKAK 57 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHH
Confidence 358999999999999999999887 51 68999999987654
No 131
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.83 E-value=3.3e-05 Score=68.53 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G 67 (303)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 79999999 99999999999888 7
No 132
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=8e-05 Score=67.52 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=70.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|+|+.||.|.||..+...|... | |+|+.||++++.++++..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999998 8 99999999998776532111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~---a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+..+++++ -+.....|-+-||.. .+.++++++++.+++ +-+||.--|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 111122332 244567888999997 789999999999998 6777765544
Q ss_pred C
Q 022050 200 V 200 (303)
Q Consensus 200 i 200 (303)
-
T Consensus 97 ~ 97 (300)
T COG1023 97 N 97 (300)
T ss_pred c
Confidence 3
No 133
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.82 E-value=0.00046 Score=63.16 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=72.8
Q ss_pred CceEEEECCCh--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhh
Q 022050 43 PLRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (303)
Q Consensus 43 ~~kI~VIGaG~--------------------mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (303)
+|||+|.|+|+ -|+.+|..||++ | |+|+|.+++.+-.+. +
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~----------- 60 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---E----------- 60 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---H-----------
Confidence 48999999996 377899999999 9 999999998865432 1
Q ss_pred HHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHH
Q 022050 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (303)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~ 181 (303)
..+.+ .| ..+++++|..++++.+++.++.+|-. .+-.+.++|.
T Consensus 61 ----------~w~~v----ed----------------------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 61 ----------HWKRV----ED----------------------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred ----------HHHHH----Hh----------------------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 11111 11 26788888888999999999999997 7888999999
Q ss_pred HHhhccCCCCEEE
Q 022050 182 RYWKERITVPVII 194 (303)
Q Consensus 182 ~~l~~~~~~~iiv 194 (303)
++++. +++|.
T Consensus 105 ~hvpE---gAVic 114 (340)
T COG4007 105 EHVPE---GAVIC 114 (340)
T ss_pred hhCcC---CcEec
Confidence 99997 66543
No 134
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.81 E-value=5.8e-05 Score=70.68 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
-++++|+|+|.||.++|..|... | .+|++++|++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~~ 187 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSADL 187 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 37999999999999999999988 8 7999999987643
No 135
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.80 E-value=4.5e-05 Score=75.08 Aligned_cols=120 Identities=27% Similarity=0.357 Sum_probs=80.3
Q ss_pred chhhhhhHHH--HHhccCCC-------CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHH
Q 022050 24 SLEERLDELR--RLMGKAEG-------DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLF 94 (303)
Q Consensus 24 ~~~~~~~~~~--~~~~~~~~-------~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~ 94 (303)
++++.|.++. |+|...+- .-++|+|||+|++|.+-|..|... | ++|++--|... ++. +
T Consensus 8 ~~~~~~~~~~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~~-id~---~--- 74 (487)
T PRK05225 8 NLRQQLAQLGKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEA-IAE---K--- 74 (487)
T ss_pred cHHHHHHHhccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccc-c-----ceeEEeccccc-ccc---c---
Confidence 4577777776 44444442 138999999999999999888888 8 88886655431 110 0
Q ss_pred HHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHH
Q 022050 95 EVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (303)
Q Consensus 95 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~ 174 (303)
+ ...+.. ..+| +.+ .+.+++++.||+|++.+|.....
T Consensus 75 ----~------------~s~~kA--------------~~dG------------F~v-~~~~Ea~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 75 ----R------------ASWRKA--------------TENG------------FKV-GTYEELIPQADLVINLTPDKQHS 111 (487)
T ss_pred ----c------------chHHHH--------------HhcC------------Ccc-CCHHHHHHhCCEEEEcCChHHHH
Confidence 0 000000 0012 222 45788899999999999999878
Q ss_pred HHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 175 EVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 175 ~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.+.+++.+++++ ++. +..+-|+...
T Consensus 112 ~v~~~i~p~LK~---Ga~-L~fsHGFni~ 136 (487)
T PRK05225 112 DVVRAVQPLMKQ---GAA-LGYSHGFNIV 136 (487)
T ss_pred HHHHHHHhhCCC---CCE-EEecCCceee
Confidence 888999999997 554 4566676653
No 136
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.79 E-value=0.00017 Score=67.85 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.0
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+|||+|.+|+++|..++.. |.. .+++++|+++++++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~g 38 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAKG 38 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHH
Confidence 68999999999999999987 632 479999999887654
No 137
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.76 E-value=0.00023 Score=67.29 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred hhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhh
Q 022050 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (303)
Q Consensus 29 ~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (303)
++..+..++. -..+||+|||+|.||..++..+... |. .+|++++|++++.+.+..+
T Consensus 166 v~~a~~~~~~--l~~~~V~ViGaG~iG~~~a~~L~~~-g~----~~V~v~~r~~~ra~~la~~----------------- 221 (311)
T cd05213 166 VELAEKIFGN--LKGKKVLVIGAGEMGELAAKHLAAK-GV----AEITIANRTYERAEELAKE----------------- 221 (311)
T ss_pred HHHHHHHhCC--ccCCEEEEECcHHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHHHHHH-----------------
Confidence 4444444443 2348999999999999999999885 51 6899999998765431100
Q ss_pred hhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccC
Q 022050 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERI 188 (303)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~ 188 (303)
+.. ......+..+++.++|+||.++++....++++.+......
T Consensus 222 -----~g~------------------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~-- 264 (311)
T cd05213 222 -----LGG------------------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSG-- 264 (311)
T ss_pred -----cCC------------------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCC--
Confidence 000 0111134566778999999999988765555544322221
Q ss_pred CCCEEEEeec
Q 022050 189 TVPVIISLAK 198 (303)
Q Consensus 189 ~~~iivs~~n 198 (303)
++.+++.+..
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 1456776664
No 138
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.75 E-value=0.00042 Score=65.52 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||+|||+|.+|+++|..|+.+ +.. .++.|+|.+++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999987 732 37999999887653
No 139
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00013 Score=70.93 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=60.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||.|||||.+|+.+|..||++ | ..+|++.+|+.++.+++.... ....+..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~----d~~V~iAdRs~~~~~~i~~~~------------------~~~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-G----DGEVTIADRSKEKCARIAELI------------------GGKVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-C----CceEEEEeCCHHHHHHHHhhc------------------cccceeE-----
Confidence 68999999999999999999999 6 279999999998876643110 0001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHH
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEE 179 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~ 179 (303)
.+ .+.-...+.+++++.|+||-+.|+.+...+++.
T Consensus 53 --~v--------------------D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka 87 (389)
T COG1748 53 --QV--------------------DAADVDALVALIKDFDLVINAAPPFVDLTILKA 87 (389)
T ss_pred --Ee--------------------cccChHHHHHHHhcCCEEEEeCCchhhHHHHHH
Confidence 11 111123456778899999999999876666644
No 140
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00053 Score=65.06 Aligned_cols=156 Identities=13% Similarity=0.161 Sum_probs=99.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..+|+|||-|+||..+|..|.++ | |.|...+|.+ .+.+. + .| +
T Consensus 52 tl~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssaa---------~------------~y--------g 94 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSAA---------E------------KY--------G 94 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHHH---------H------------Hh--------c
Confidence 46899999999999999999999 9 9999999987 22111 0 01 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~ 201 (303)
.. ..+...|+ .-+..|+|++||.--.++.+++..-+. ++. +++++..++--.
T Consensus 95 ~~----------------------~ft~lhdl--cerhpDvvLlctsilsiekilatypfqrlrr---gtlfvdvlSvKe 147 (480)
T KOG2380|consen 95 SA----------------------KFTLLHDL--CERHPDVVLLCTSILSIEKILATYPFQRLRR---GTLFVDVLSVKE 147 (480)
T ss_pred cc----------------------ccccHHHH--HhcCCCEEEEEehhhhHHHHHHhcCchhhcc---ceeEeeeeecch
Confidence 00 11111232 236799999999998888888876554 444 777775553322
Q ss_pred cccccccccCCHHHHHHhHhCCCCccE--EEEeCCCcHHHHhccCceEEE-E-eC----ChhhHHHHHHHhcCCCeEEE
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIASEIYNKEYANAR-I-CG----AEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~--~v~~GP~~a~ev~~g~~~~~~-~-~~----~~~~~~~i~~lf~~~g~~~~ 272 (303)
++ -+.+.+++|....-. --+.||.....-++|.|.... . .+ ..+..+.+.++|.+.+-+.+
T Consensus 148 fe----------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmV 216 (480)
T KOG2380|consen 148 FE----------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMV 216 (480)
T ss_pred hH----------HHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEE
Confidence 21 245667776542111 134677755566677764331 1 22 25678999999988876553
No 141
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.71 E-value=0.00013 Score=68.77 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|+.... +.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~~------------------------------~~----- 160 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVND------------------------------GI----- 160 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCccc------------------------------Cc-----
Confidence 48999999999999999987665 7 8999999874210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. ....++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|-
T Consensus 161 ------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG~ 212 (303)
T PRK06436 161 ------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARAD 212 (303)
T ss_pred ------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 0 01236778889999999999975 355554 234444676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 213 ~vd 215 (303)
T PRK06436 213 VVD 215 (303)
T ss_pred ccC
Confidence 544
No 142
>PRK05442 malate dehydrogenase; Provisional
Probab=97.70 E-value=0.00037 Score=66.43 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
+++||+|||+ |.+|+.+|..|+.. |.+. ...++.|+|.++. +++... +. +.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~~~~~~~g~a-------~D---------------l~~ 59 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPPALKALEGVV-------ME---------------LDD 59 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCCcccccceee-------hh---------------hhh
Confidence 4689999998 99999999999887 6431 1127999999653 222100 00 110
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC----ch------------hHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP----ST------------ETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp----~~------------~~~~vl~~l 180 (303)
. .. | ......++++..+++++||+||++-- +. .++++.++|
T Consensus 60 ~-------~~-~---------------~~~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i 116 (326)
T PRK05442 60 C-------AF-P---------------LLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKAL 116 (326)
T ss_pred h-------hh-h---------------hcCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 00123455555567899999999662 21 256666777
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ +.+++..+|.+.
T Consensus 117 ~~~~~~---~~iiivvsNPvD 134 (326)
T PRK05442 117 NEVAAR---DVKVLVVGNPAN 134 (326)
T ss_pred HHhCCC---CeEEEEeCCchH
Confidence 776654 677887888553
No 143
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.70 E-value=0.00045 Score=65.75 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|.++. .++. + .+. +.+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~~~~a~g---~----a~D---------------l~~ 58 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPPAMKALEG---V----AME---------------LED 58 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCCcccccch---H----HHH---------------Hhh
Confidence 5789999999 99999999999987 7421 1117999999752 2321 0 000 000
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--C--ch------------hHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--P--ST------------ETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p--~~------------~~~~vl~~l 180 (303)
. .. | ...+..++++..+++++||+||++- | +. .++++.++|
T Consensus 59 ~-------~~-~---------------~~~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i 115 (323)
T TIGR01759 59 C-------AF-P---------------LLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKAL 115 (323)
T ss_pred c-------cc-c---------------ccCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0012334445556789999999976 2 11 356677777
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ +.+++..+|.+.
T Consensus 116 ~~~~~~---~~iiivvsNPvD 133 (323)
T TIGR01759 116 NKVAKK---DVKVLVVGNPAN 133 (323)
T ss_pred HhhCCC---CeEEEEeCCcHH
Confidence 777664 577777888543
No 144
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.70 E-value=0.00011 Score=71.49 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=65.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|+||..+|..+..- | .+|.+||+.....+ .
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~~-----------------------------~------ 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEAE-----------------------------G------ 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCcccccc-----------------------------c------
Confidence 37999999999999999999877 8 89999987532100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHHHhhccCCCCEEEEe
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL 196 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-----~~~vl-~~l~~~l~~~~~~~iivs~ 196 (303)
... ..++++.+++||+|++.+|-.. +..++ ++....+++ ++++|.+
T Consensus 155 ------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~ 206 (381)
T PRK00257 155 ------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLINA 206 (381)
T ss_pred ------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEEC
Confidence 011 1357788889999999999642 44444 233444666 7899988
Q ss_pred eccCccc
Q 022050 197 AKGVEAE 203 (303)
Q Consensus 197 ~nGi~~~ 203 (303)
..|=..+
T Consensus 207 aRG~vVd 213 (381)
T PRK00257 207 SRGAVVD 213 (381)
T ss_pred CCCcccC
Confidence 8875554
No 145
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.70 E-value=0.00012 Score=73.98 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=68.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|++.... +. ...
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 178 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER--------------------------AEQ------ 178 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 37999999999999999999876 7 899999985321 00 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+...+++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 179 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 232 (525)
T TIGR01327 179 -----------------------LGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGG 232 (525)
T ss_pred -----------------------cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCc
Confidence 02333457888899999999999975 455555 233345676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 233 ~vd 235 (525)
T TIGR01327 233 IID 235 (525)
T ss_pred eeC
Confidence 443
No 146
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.70 E-value=0.00011 Score=69.67 Aligned_cols=95 Identities=24% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.....+|+|||+|.||...+..+....+ ..+|++|+|++++.+++..+ +.. .+
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~a~~-----~~~---------------~g--- 174 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEALAAE-----LRA---------------QG--- 174 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHHH-----HHh---------------cC---
Confidence 3456899999999999999987665213 16899999998876542210 000 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+.+..++++++++||+|+.++++. ..++.. .++++ ++.|.
T Consensus 175 --------------------------~~~~~~~~~~~av~~aDIVi~aT~s~--~pvl~~--~~l~~---g~~i~ 216 (314)
T PRK06141 175 --------------------------FDAEVVTDLEAAVRQADIISCATLST--EPLVRG--EWLKP---GTHLD 216 (314)
T ss_pred --------------------------CceEEeCCHHHHHhcCCEEEEeeCCC--CCEecH--HHcCC---CCEEE
Confidence 02445677888899999999999876 333332 45666 66443
No 147
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.68 E-value=0.00015 Score=73.46 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=69.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|.... +. ...
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ------ 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 47999999999999999999877 8 899999986421 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+... ++++.++.||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 181 -----------------------~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG~ 233 (526)
T PRK13581 181 -----------------------LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARGG 233 (526)
T ss_pred -----------------------cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCCc
Confidence 022333 6888899999999999986 456665 445555677 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 234 ~vd 236 (526)
T PRK13581 234 IID 236 (526)
T ss_pred eeC
Confidence 543
No 148
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.68 E-value=0.0004 Score=65.69 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+||+|||+|.+|+++|..|+.. + +. .++.|+|++++..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~-~~--~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-G-LG--SELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-c-cc--ceEEEEEcccccc
Confidence 6999999999999999999765 5 21 3899999996654
No 149
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.67 E-value=9.8e-05 Score=61.31 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=35.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|+.|||+|-+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 48999999999999999999998 82 469999999887654
No 150
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.66 E-value=0.00014 Score=70.66 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=65.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|+||+.+|..+..- | .+|..|++..... +.
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~~~------------------------------~~---- 154 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRADR------------------------------GD---- 154 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCccccc------------------------------cc----
Confidence 348999999999999999999876 8 8999998643200 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHHHhhccCCCCEEEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-----~~~vl-~~l~~~l~~~~~~~iivs 195 (303)
... ..++++.+++||+|++.+|-.. ...++ ++....+++ ++++|.
T Consensus 155 -------------------------~~~-~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (378)
T PRK15438 155 -------------------------EGD-FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILIN 205 (378)
T ss_pred -------------------------ccc-cCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEE
Confidence 001 1367888889999999998543 33343 233344666 889999
Q ss_pred eeccCccc
Q 022050 196 LAKGVEAE 203 (303)
Q Consensus 196 ~~nGi~~~ 203 (303)
+..|=..+
T Consensus 206 ~aRG~vVD 213 (378)
T PRK15438 206 ACRGAVVD 213 (378)
T ss_pred CCCchhcC
Confidence 88885554
No 151
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.66 E-value=0.00038 Score=66.23 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=31.6
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (303)
++||+|||+ |.+|+++|..++.. |.+. ...++.|+|.++.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 579999999 99999999999987 7431 1127999999653
No 152
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.65 E-value=0.00042 Score=65.54 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||+|+|+ |.+|..++..++.. |.. .+|+++|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999998 721 2699999965
No 153
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.63 E-value=0.00085 Score=59.56 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC---Cchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP---GRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~---~~~~~~ 87 (303)
..||+|+|+|.||+.+|..|++. |. .+++++|++ ++.+.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ve~sNL~R 63 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GI----GKLILVDFDVVEPSNLNR 63 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCCEEccccccc
Confidence 47899999999999999999999 92 379999999 555443
No 154
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.63 E-value=0.00063 Score=62.95 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=46.3
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCc
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~ 226 (303)
.+.+++|+++...++|+||.++++....+.+..... . +..+|+-+.|++.+. .+.+.+.....
T Consensus 55 gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~---~---g~~vVigttg~~~e~---------~~~l~~aA~~~-- 117 (266)
T TIGR00036 55 GVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALE---H---GVRLVVGTTGFSEED---------KQELADLAEKA-- 117 (266)
T ss_pred CceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHH---C---CCCEEEECCCCCHHH---------HHHHHHHHhcC--
Confidence 355678887764568999999999887776665443 2 455665555876531 12233332211
Q ss_pred cEEEEeCCCcHHH
Q 022050 227 NILYLGGPNIASE 239 (303)
Q Consensus 227 ~~~v~~GP~~a~e 239 (303)
.+.++.+||++--
T Consensus 118 g~~v~~a~NfSlG 130 (266)
T TIGR00036 118 GIAAVIAPNFSIG 130 (266)
T ss_pred CccEEEECcccHH
Confidence 1346778888653
No 155
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00022 Score=67.98 Aligned_cols=96 Identities=23% Similarity=0.209 Sum_probs=69.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|+.+|..+..- | .+|..||+....-. ...
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~----------------------------~~~----- 182 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRER----------------------------AGV----- 182 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhh----------------------------hcc-----
Confidence 48999999999999999999876 8 89999999432110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
.......++++.++.||+|.+.+|-. .++.++. +....+++ ++++|.+..|-
T Consensus 183 -----------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~aRG~ 236 (324)
T COG0111 183 -----------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINAARGG 236 (324)
T ss_pred -----------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEECCCcc
Confidence 02333467888999999999999986 4566653 23344666 78889888886
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 237 vVd 239 (324)
T COG0111 237 VVD 239 (324)
T ss_pred eec
Confidence 554
No 156
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.62 E-value=0.00024 Score=69.80 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=67.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++.+... ..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~~----------------------------~~------- 189 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKLP----------------------------LG------- 189 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCcccc----------------------------cC-------
Confidence 47999999999999999999876 7 8999999864210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++.++.||+|++.+|.. .++.++ ++....+++ ++++|.+..|-
T Consensus 190 ------------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 242 (409)
T PRK11790 190 ------------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRGT 242 (409)
T ss_pred ------------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCCc
Confidence 1223357888999999999999975 355555 334445676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 243 ~vd 245 (409)
T PRK11790 243 VVD 245 (409)
T ss_pred ccC
Confidence 543
No 157
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.61 E-value=0.00042 Score=63.74 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=63.0
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|+|+ |.||..++..+....+ .++. +++++++.... . .
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-----~elvav~d~~~~~~~~-------------------------~-~----- 44 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-----LELVAAVDRPGSPLVG-------------------------Q-G----- 44 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc-------------------------c-C-----
Confidence 489999999 9999999988876412 4544 57777653321 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. ..+..++|++++++++|+||.++|+....+.+..... . +..++.-+-|+
T Consensus 45 ----~--------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~---~---G~~vvigttG~ 94 (257)
T PRK00048 45 ----A--------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALE---H---GKPLVIGTTGF 94 (257)
T ss_pred ----C--------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence 0 1234557888877789999999988877666655443 2 44455446576
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
No 158
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.58 E-value=0.00071 Score=54.91 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=60.3
Q ss_pred eEEEEC-CChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 45 kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+|+| .|++|..+...|+++ -. .+ +.+++++++.-..+ ... .+ .....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~----~e~~~~~~~~~~~g~~~---------~~~---------~~-~~~~~----- 51 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PD----FELVALVSSSRSAGKPL---------SEV---------FP-HPKGF----- 51 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-ST----EEEEEEEESTTTTTSBH---------HHT---------TG-GGTTT-----
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CC----ccEEEeeeeccccCCee---------ehh---------cc-ccccc-----
Confidence 799999 799999999999986 31 45 44556555221111 100 00 00100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+.+.. +.+ .+.++|+||+|+|.....+..+++ ++. +..||.++.-+
T Consensus 52 -----------------------~~~~~~~~~~~-~~~~~Dvvf~a~~~~~~~~~~~~~---~~~---g~~ViD~s~~~ 100 (121)
T PF01118_consen 52 -----------------------EDLSVEDADPE-ELSDVDVVFLALPHGASKELAPKL---LKA---GIKVIDLSGDF 100 (121)
T ss_dssp -----------------------EEEBEEETSGH-HHTTESEEEE-SCHHHHHHHHHHH---HHT---TSEEEESSSTT
T ss_pred -----------------------cceeEeecchh-HhhcCCEEEecCchhHHHHHHHHH---hhC---CcEEEeCCHHH
Confidence 0233333 443 468999999999999888888876 344 67888877655
No 159
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.57 E-value=0.00066 Score=66.10 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=67.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCe--eEEEE--ecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIW--RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~--~V~l~--~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
++.||+|||+ |.+|+++|..++.. |.+..+. .+.|+ |++++.++... +. +.+
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~g~a-------~D---------------L~d 99 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALEGVA-------ME---------------LED 99 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhhHHH-------HH---------------HHH
Confidence 3699999999 99999999999987 7543112 34445 77776554210 10 110
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--h------------hHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--T------------ETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--~------------~~~~vl~~l 180 (303)
. .+ + .+.++.++++..+++++||+||++- |. . .++++.+.|
T Consensus 100 ~-------a~------~----------~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I 156 (387)
T TIGR01757 100 S-------LY------P----------LLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKAL 156 (387)
T ss_pred h-------hh------h----------hcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0013554555556789999999965 21 1 255566666
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ +.+++..+|.+.
T Consensus 157 ~~~a~~---~~iviVVsNPvD 174 (387)
T TIGR01757 157 NAVASK---NCKVLVVGNPCN 174 (387)
T ss_pred HHhCCC---CeEEEEcCCcHH
Confidence 666545 677877887653
No 160
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.56 E-value=0.00094 Score=58.55 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=49.0
Q ss_pred eEEEECCChHHHH--HHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 45 RIVGVGAGAWGSV--FTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 45 kI~VIGaG~mG~a--iA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+|||+|+.-.. +-..+... ..+.. .++.|+|+++++++.+. .+.+.+ .+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~~-~ei~L~Did~~RL~~~~--~~~~~~----------------~~~~----- 55 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELSG-SEIVLMDIDEERLEIVE--RLARRM----------------VEEA----- 55 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTSTE-EEEEEE-SCHHHHHHHH--HHHHHH----------------HHHC-----
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCCC-cEEEEEcCCHHHHHHHH--HHHHHH----------------HHhc-----
Confidence 8999999986554 33334433 22332 58999999998887532 111111 1110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~ 171 (303)
.. ...+..|+|.++|+++||+||.++-..
T Consensus 56 --~~------------------~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 56 --GA------------------DLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp --TT------------------SSEEEEESSHHHHHTTESEEEE---TT
T ss_pred --CC------------------CeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 00 025788999999999999999998653
No 161
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.54 E-value=0.00042 Score=65.17 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
.+|++|+|+|.+|.+++..|... | .+|++++|++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~~ 188 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAHL 188 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHH
Confidence 48999999999999999999887 8 7999999997643
No 162
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.53 E-value=0.00065 Score=67.05 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=70.5
Q ss_pred ceEEEECCChH-HHHHHHHHHHhcC-CCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAW-GSVFTAMLQDSYG-YLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~m-G~aiA~~La~~~G-~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+. ...+...|+.. . .+.. .+|.|+|.++++++.+. .+.+.+ .+..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~-~~~l~~-~ei~L~Did~~Rl~~v~--~l~~~~----------------~~~~---- 56 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKT-PEELPI-SEVTLYDIDEERLDIIL--TIAKRY----------------VEEV---- 56 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcC-hhhCCC-CEEEEEcCCHHHHHHHH--HHHHHH----------------HHhh----
Confidence 79999999983 33344445543 2 1322 68999999998776421 111111 1100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------------------------
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------ 171 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~------------------------------ 171 (303)
+. . ..+..|+|.++|+++||+||.++-..
T Consensus 57 g~-~--------------------~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~ 115 (425)
T cd05197 57 GA-D--------------------IKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFS 115 (425)
T ss_pred CC-C--------------------eEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhh
Confidence 00 0 15788999999999999999988431
Q ss_pred ------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 ------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++.+ ++.++..+|.+..
T Consensus 116 alrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 116 GLRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 34566677776654 6889999988654
No 163
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.53 E-value=0.00073 Score=63.99 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=29.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
|||+|||+ |.+|+++|..|+.. |. . .++.|+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~-~--~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PL-V--SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CC-C--cEEEEEecC
Confidence 79999999 99999999999887 62 1 479999998
No 164
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.53 E-value=0.00038 Score=65.85 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.+|..+|..+..- | .+|..|+|.....+ .
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------ 183 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------ 183 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c------
Confidence 348999999999999999998654 7 78999988532100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.. .++++.++.||+|++++|-. .++.++ ++.-..+++ ++++|.+..|
T Consensus 184 -------------------------~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG 234 (311)
T PRK08410 184 -------------------------EYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRG 234 (311)
T ss_pred -------------------------Ccee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCc
Confidence 1111 36888899999999999975 344444 223344676 8899988888
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=..+
T Consensus 235 ~vVD 238 (311)
T PRK08410 235 GIVN 238 (311)
T ss_pred cccC
Confidence 5554
No 165
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.52 E-value=0.00078 Score=64.14 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~ 82 (303)
.||+|+|| |.+|+.+|..|+.. |.+. ...++.|+|+++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 38999999 99999999999987 6432 113699999987
No 166
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.52 E-value=0.00029 Score=67.02 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
..+..+++|||+|.+|...+..+... - +-.+|.+|+|++++.+++.++ +...
T Consensus 125 ~~~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~~----------------------~~~~-- 176 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFALR----------------------ASDY-- 176 (325)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHHH----------------------HHhh--
Confidence 34568999999999999977777553 1 116899999999876542110 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
. ..+....+.++++++||+|+.|+|+.. .++. ..++++ ++.|.+
T Consensus 177 -----g--------------------~~v~~~~~~~eav~~aDiVitaT~s~~--P~~~--~~~l~~---g~~v~~ 220 (325)
T TIGR02371 177 -----E--------------------VPVRAATDPREAVEGCDILVTTTPSRK--PVVK--ADWVSE---GTHINA 220 (325)
T ss_pred -----C--------------------CcEEEeCCHHHHhccCCEEEEecCCCC--cEec--HHHcCC---CCEEEe
Confidence 0 135567889999999999999998853 2221 234566 666543
No 167
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.52 E-value=0.00045 Score=65.69 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....+++|||+|.+|...+..++...+. .+|.+|+|++++.+++.+ .+... . +
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~----~~v~v~~r~~~~a~~~~~-----~~~~~-------------~-~---- 177 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI----ERVRVYSRTFEKAYAFAQ-----EIQSK-------------F-N---- 177 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc----cEEEEECCCHHHHHHHHH-----HHHHh-------------c-C----
Confidence 3567999999999999988777643131 589999999987654221 11100 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+....+.+++++++|+|+.|+|+.. .++. .++++ ++.|+++
T Consensus 178 -------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~i 220 (325)
T PRK08618 178 -------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINAV 220 (325)
T ss_pred -------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEec
Confidence 023455778888999999999999883 3333 44566 6665543
No 168
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.51 E-value=0.00059 Score=65.00 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=57.8
Q ss_pred cCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 38 ~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
......++|+|||+|.+|.+.+..++...+. .+|.+|+|++++.+++.++ ++. .+ +
T Consensus 127 la~~~~~~v~IiGaG~~a~~~~~al~~~~~~----~~V~v~~R~~~~a~~l~~~-----~~~-------------~~-g- 182 (330)
T PRK08291 127 LAREDASRAAVIGAGEQARLQLEALTLVRPI----REVRVWARDAAKAEAYAAD-----LRA-------------EL-G- 182 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEcCCHHHHHHHHHH-----Hhh-------------cc-C-
Confidence 3444568999999999999988888753131 5899999999877643211 100 00 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~ 171 (303)
..+....|+++++.++|+|+.|+|+.
T Consensus 183 ----------------------------~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 183 ----------------------------IPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ----------------------------ceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 02445678888899999999999986
No 169
>PLN02928 oxidoreductase family protein
Probab=97.50 E-value=0.00032 Score=67.42 Aligned_cols=108 Identities=23% Similarity=0.207 Sum_probs=67.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|+...... ..+ .+.. .....+ .
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~---~~~--~~~~------------~~~~~~----~ 211 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE---DGL--LIPN------------GDVDDL----V 211 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh---hhh--cccc------------cccccc----c
Confidence 37999999999999999999876 8 899999987431100 000 0000 000000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+ ... ...++++++++||+|++++|.. ..+.++ ++....+++ ++++|.+..|-
T Consensus 212 ~----------------------~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG~ 265 (347)
T PLN02928 212 D----------------------EKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARGG 265 (347)
T ss_pred c----------------------ccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCcc
Confidence 0 001 1247888999999999999975 344444 233444676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 266 lVd 268 (347)
T PLN02928 266 LLD 268 (347)
T ss_pred ccC
Confidence 544
No 170
>PLN00106 malate dehydrogenase
Probab=97.48 E-value=0.0014 Score=62.47 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 32 LRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 32 ~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
||.-..+-.....||+|+|+ |.+|+.+|..|+.. +.. .++.|+|+++
T Consensus 7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 44444555566789999999 99999999999977 622 4799999987
No 171
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00046 Score=62.34 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=35.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+|+|+|+|.+|..+|..|.+. | |+|++++++++.+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEE 38 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHH
Confidence 7999999999999999999999 8 999999999987653
No 172
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.45 E-value=0.0011 Score=61.39 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
||||+|||+|+||..++..+.+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC
Confidence 58999999999999999998765
No 173
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.0012 Score=63.81 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=75.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+.|++||.|.||+-+|.-++.+ | +.|.+|.|+.++.++.- +.+ + ..+
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~f~--------~~~----------~-~~k-------- 50 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDEFL--------AER----------A-KGK-------- 50 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHHHH--------HhC----------c-cCC--------
Confidence 5799999999999999999999 9 89999999998877532 211 0 011
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec---CHHHHhcCCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT---NLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~---d~~~a~~~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
++..+. +....++...-|++=|+. ..+++++++|.|++.+ +-+||.--|.
T Consensus 51 -----------------------~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGNs 104 (473)
T COG0362 51 -----------------------NIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGNS 104 (473)
T ss_pred -----------------------CccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCCc
Confidence 122222 334456778899999988 4679999999999998 7788876666
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
.-.+
T Consensus 105 ~y~D 108 (473)
T COG0362 105 HYKD 108 (473)
T ss_pred CCch
Confidence 5554
No 174
>PLN00203 glutamyl-tRNA reductase
Probab=97.39 E-value=0.00059 Score=68.89 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=42.8
Q ss_pred hhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...+..+..++...-..++|+|||+|.||..++..|... |. .+|++++|+.++.+.
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~~ 305 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVAA 305 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHHH
Confidence 455556666664333458999999999999999999987 71 379999999876653
No 175
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.38 E-value=0.00069 Score=60.96 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=57.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|+|++||+|++|..+...+-. |..+- .-|.+|||+++++.++. ..+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~--~~~~~-e~v~v~D~~~ek~~~~~-------------------------~~~------ 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRD--GRVDF-ELVAVYDRDEEKAKELE-------------------------ASV------ 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhc--CCcce-eEEEEecCCHHHHHHHH-------------------------hhc------
Confidence 689999999999999887754 32111 34788999988664310 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
....++++++.+++.|++++|-.++++++...++..
T Consensus 47 -----------------------~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 47 -----------------------GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred -----------------------CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 112236777777899999999988888887777643
No 176
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.36 E-value=0.00097 Score=58.39 Aligned_cols=100 Identities=19% Similarity=0.320 Sum_probs=69.4
Q ss_pred CCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHH-HHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhh
Q 022050 22 NGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINS 99 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~-La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~ 99 (303)
.|..+.=+++|+.+++-.+ +-|+.+||+|++|.|++.+ +.+++| .+ +-++|.+++.+-.
T Consensus 65 GYnV~~L~~ff~~~Lg~~~--~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~------------ 125 (211)
T COG2344 65 GYNVKYLRDFFDDLLGQDK--TTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT------------ 125 (211)
T ss_pred CccHHHHHHHHHHHhCCCc--ceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc------------
Confidence 4566777888888887665 5789999999999999877 443324 44 4568888864321
Q ss_pred hhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHH
Q 022050 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVF 177 (303)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl 177 (303)
...++ +++-.+++++-++ +.|+.|++||+..-++++
T Consensus 126 -------------~~~~v-----------------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~va 163 (211)
T COG2344 126 -------------KIGDV-----------------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVA 163 (211)
T ss_pred -------------ccCCe-----------------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHH
Confidence 11110 2333355665555 789999999999999898
Q ss_pred HHHHH
Q 022050 178 EEISR 182 (303)
Q Consensus 178 ~~l~~ 182 (303)
+.|..
T Consensus 164 d~Lv~ 168 (211)
T COG2344 164 DRLVK 168 (211)
T ss_pred HHHHH
Confidence 88764
No 177
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.36 E-value=0.0013 Score=62.31 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.6
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
||+|||+ |.+|+++|..|+.+ +.. .++.|+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCC
Confidence 7999999 99999999999887 621 3799999987
No 178
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.36 E-value=0.00065 Score=66.76 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|||.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 7899999999999999999988 8 899999999876654
No 179
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.35 E-value=0.0022 Score=63.48 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=34.3
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCC--e--eEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--V--LIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~--~--~V~l~~r~~~~~~ 86 (303)
.+-||+|||+ |.+|+++|..|+.. +.|..+ . ++.++|++++.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~ 147 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALE 147 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhH
Confidence 3589999999 99999999999876 433311 1 6889999988764
No 180
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.34 E-value=0.00094 Score=63.57 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=66.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|..+|..+....| .+|..|+|....-. ...
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~~~---------------------------~~~------ 186 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHKEA---------------------------EER------ 186 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCchhh---------------------------HHh------
Confidence 4899999999999999999862226 78888887642100 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
...+. .++++.++.||+|++++|-. .++.++ ++....+++ ++++|.+..|=
T Consensus 187 -----------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 239 (323)
T PRK15409 187 -----------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRGP 239 (323)
T ss_pred -----------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCcc
Confidence 01222 36888899999999999975 355555 233444676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 240 vVd 242 (323)
T PRK15409 240 VVD 242 (323)
T ss_pred ccC
Confidence 554
No 181
>PLN02306 hydroxypyruvate reductase
Probab=97.33 E-value=0.0011 Score=64.67 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=68.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..++...| .+|..|++....... . .... .+..+...
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~---~----~~~~----------~~~~l~~~----- 217 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE---K----FVTA----------YGQFLKAN----- 217 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh---h----hhhh----------hccccccc-----
Confidence 4899999999999999999864336 789999987632100 0 0000 00000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
... ...++...+++++++.||+|++++|-. .++.++. +....+++ ++++|.+..|=
T Consensus 218 --~~~-----------------~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG~ 275 (386)
T PLN02306 218 --GEQ-----------------PVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRGP 275 (386)
T ss_pred --ccc-----------------cccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 000 001223457899999999999999865 4555552 33445676 88999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 276 lVD 278 (386)
T PLN02306 276 VID 278 (386)
T ss_pred ccC
Confidence 444
No 182
>PRK05086 malate dehydrogenase; Provisional
Probab=97.31 E-value=0.0018 Score=61.30 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|||| |.+|++++..++...+. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988652121 168999999854
No 183
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.31 E-value=0.0024 Score=60.82 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=31.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (303)
+.||+|+|| |.+|+.++..|+.. +.+. ...+|.++|+++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCCc
Confidence 579999999 99999999999886 5331 1148999999763
No 184
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.31 E-value=0.0016 Score=57.79 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=34.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.-|+|+|+|.|+||..+|..|.+. | ++|+++|++++.++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~~ 65 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAVA 65 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 348999999999999999999998 9 89999999876543
No 185
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.31 E-value=0.0021 Score=61.25 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=30.3
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.|.||+|+|+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 5679999999 99999999999866 521 589999993
No 186
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.30 E-value=0.0013 Score=62.77 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=66.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|.++|+.+..- | .+|..|+|.+. -+. .+.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~F-g-----m~v~y~~~~~~-~~~--------------------------~~~------ 186 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGF-G-----MKVLYYDRSPN-PEA--------------------------EKE------ 186 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCCC-hHH--------------------------Hhh------
Confidence 38999999999999999999843 6 78999999874 110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++.. +++.++++|+|.+.+|.. ....++ ++....+++ +.++|.+..|=
T Consensus 187 -----------------------~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~ 239 (324)
T COG1052 187 -----------------------LGARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGG 239 (324)
T ss_pred -----------------------cCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 0133333 788899999999999986 355555 233344676 78888887775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 240 ~VD 242 (324)
T COG1052 240 LVD 242 (324)
T ss_pred ccC
Confidence 544
No 187
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.30 E-value=0.0018 Score=63.67 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=49.3
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++.+++|++.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 5678889988888777789999999999999999999988 7 899999999986654
No 188
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.29 E-value=0.00085 Score=63.66 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=64.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|+|..... .
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~~---------------------------~--------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRPA---------------------------R--------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCcc---------------------------c---------
Confidence 47999999999999999998755 7 7899888753200 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. ..++++.++.||+|++++|-. .++.++ ++.-..+++ ++++|.+..|=
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG~ 236 (317)
T PRK06487 186 -------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARGG 236 (317)
T ss_pred -------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 00 125778889999999999975 455555 223344676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 237 vVd 239 (317)
T PRK06487 237 LVD 239 (317)
T ss_pred ccC
Confidence 554
No 189
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.28 E-value=0.0011 Score=62.56 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=35.0
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
....++++|||+|.+|...+..++...+. .+|.+|+|++++.++
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~----~~v~v~~r~~~~a~~ 165 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPV----RRVWVRGRTAASAAA 165 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC----CEEEEEcCCHHHHHH
Confidence 34568999999999999999999753131 579999999887654
No 190
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.26 E-value=0.0026 Score=60.67 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.8
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (303)
||+|||+ |.+|+.+|..|+.. |.+. +..++.|+|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6432 2237999999764
No 191
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.26 E-value=0.0011 Score=63.63 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.....+++|||+|..+..-+..++.-.. -.+|++|+|++++.+++.++ ++. .+
T Consensus 126 r~da~~l~iiGaG~QA~~~l~a~~~vr~----i~~V~v~~r~~~~a~~~~~~-----~~~---------------~~--- 178 (346)
T PRK07589 126 RPDSRTMALIGNGAQSEFQALAFKALLG----IEEIRLYDIDPAATAKLARN-----LAG---------------PG--- 178 (346)
T ss_pred cCCCcEEEEECCcHHHHHHHHHHHHhCC----ceEEEEEeCCHHHHHHHHHH-----HHh---------------cC---
Confidence 3456899999999999888877765311 16899999999876542210 000 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
.++.+..+.++++++||+|+.++++.....+++ ..++++ ++.|.
T Consensus 179 --------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~--~~~lkp---G~hV~ 222 (346)
T PRK07589 179 --------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILT--DDMVEP---GMHIN 222 (346)
T ss_pred --------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceec--HHHcCC---CcEEE
Confidence 135667889999999999999998754323333 145666 66544
No 192
>PLN02494 adenosylhomocysteinase
Probab=97.26 E-value=0.0022 Score=63.81 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=47.1
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
||||..... ....-|+=+.=+|-+.|..+..- .-++++|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 221 vnds~~K~~-fDn~yGtgqS~~d~i~r~t~i~L-aGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~r 289 (477)
T PLN02494 221 VNDSVTKSK-FDNLYGCRHSLPDGLMRATDVMI-AGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPIC 289 (477)
T ss_pred EcChhhhhh-hhccccccccHHHHHHHhcCCcc-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 677665432 22222322333666766655432 238999999999999999999876 8 789999998754
No 193
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.26 E-value=0.002 Score=60.18 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=44.8
Q ss_pred cCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|-++=.|-.-.-=...|+... .....+|++|+|+|.+|.+++..|+.. |. .+|++++|++++.+.
T Consensus 100 ~~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 100 RDGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred cCCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 35544444444333333333221 122347999999999999999999988 82 379999999877654
No 194
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.24 E-value=0.0039 Score=61.13 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=45.8
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
||||..... ....-|+=+.-++.+.|.....- .-++|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 162 vnds~~K~~-fDn~yg~g~s~~~~i~r~t~~~l-~Gk~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~r 230 (406)
T TIGR00936 162 VNDAYTKSL-FDNRYGTGQSTIDGILRATNLLI-AGKTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPIR 230 (406)
T ss_pred ecchhhchh-hhcccccchhHHHHHHHhcCCCC-CcCEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChhh
Confidence 566654432 12112333445555555443222 337999999999999999999877 8 789999998854
No 195
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0013 Score=62.82 Aligned_cols=96 Identities=26% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.+....++|||+|..+..-...+..-.+ -.+|.+|+|+++..++... . +..
T Consensus 127 ~~da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~~a~-----~-----------------l~~--- 177 (330)
T COG2423 127 RKDASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEAFAA-----R-----------------LRK--- 177 (330)
T ss_pred cCCCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHHHHH-----H-----------------HHh---
Confidence 3456889999999999999998876412 1589999999987764221 0 110
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
.+. ..+....+.++++++||+|+-++|+.. .+++ ..++++ ++.|.
T Consensus 178 -----~~~------------------~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~--~~~l~~---G~hI~ 222 (330)
T COG2423 178 -----RGG------------------EAVGAADSAEEAVEGADIVVTATPSTE--PVLK--AEWLKP---GTHIN 222 (330)
T ss_pred -----hcC------------------ccceeccCHHHHhhcCCEEEEecCCCC--Ceec--HhhcCC---CcEEE
Confidence 000 135677889999999999999999987 2332 245666 66544
No 196
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.21 E-value=0.0011 Score=62.79 Aligned_cols=91 Identities=23% Similarity=0.262 Sum_probs=64.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++..... ..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~~~----------------------------~~------- 185 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGASV----------------------------CR------- 185 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCcccc----------------------------cc-------
Confidence 37999999999999999988654 7 7888887643100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. ..+++++++.||+|++++|-. .++.++ ++....+++ ++++|.+..|-
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 236 (314)
T PRK06932 186 -------------------------EG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRGP 236 (314)
T ss_pred -------------------------cc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCcc
Confidence 00 135788899999999999965 355544 223344676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 237 ~Vd 239 (314)
T PRK06932 237 LVD 239 (314)
T ss_pred ccC
Confidence 554
No 197
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.21 E-value=0.0048 Score=60.69 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=47.6
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
||||..... ....-|+=+.-++.+.|..+..- .-.+|+|+|+|.+|..++..+... | .+|+++++++.++
T Consensus 169 vnds~~K~~-~dn~~g~g~s~~~~i~r~t~~~l-~GktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R~ 238 (413)
T cd00401 169 VNDSVTKSK-FDNLYGCRESLIDGIKRATDVMI-AGKVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPICA 238 (413)
T ss_pred ecchhhccc-ccccchhchhhHHHHHHhcCCCC-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhhH
Confidence 566654332 22222233444566666655433 237999999999999999999887 8 7899999988654
No 198
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.20 E-value=0.0011 Score=65.32 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++|+|+|+|.||..++..|... |. .+|++++|++++.+
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-G~----~~V~v~~r~~~ra~ 220 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-GV----RKITVANRTLERAE 220 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-CC----CeEEEEeCCHHHHH
Confidence 37999999999999999999887 71 37999999986553
No 199
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.19 E-value=0.0017 Score=58.03 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHH--HhcCCCCCCeeEE-EEecCCch
Q 022050 22 NGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ--DSYGYLRDKVLIR-IWRRPGRS 84 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La--~~~G~~~~~~~V~-l~~r~~~~ 84 (303)
.|.+.+=++.+|..+++.. ..+|+|||+|.+|..++..+. .. | +++. ++|+++++
T Consensus 65 gy~v~~l~~~~~~~l~~~~--~~rV~IIGaG~iG~~l~~~~~~~~~-g-----~~ivgv~D~d~~~ 122 (213)
T PRK05472 65 GYNVEELLEFIEKILGLDR--TWNVALVGAGNLGRALLNYNGFEKR-G-----FKIVAAFDVDPEK 122 (213)
T ss_pred CeeHHHHHHHHHHHhCCCC--CcEEEEECCCHHHHHHHHhhhcccC-C-----cEEEEEEECChhh
Confidence 4667777788888887763 478999999999999998643 23 4 4544 57777643
No 200
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.18 E-value=0.0034 Score=62.22 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=70.0
Q ss_pred ceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|+. +..+...|+.....+.. .+|.|+|.++++++.+. .+.+.+ .+..
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~-~ei~L~DId~~rl~~v~--~l~~~~----------------~~~~----- 56 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPL-RELVLYDIDAERQEKVA--EAVKIL----------------FKEN----- 56 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCC-CEEEEECCCHHHHHHHH--HHHHHH----------------HHhh-----
Confidence 79999999974 11233344433001221 58999999998876522 111111 1100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-------------------------------
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------- 171 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~------------------------------- 171 (303)
.. ...+..|+|.++|+++||+||.++-..
T Consensus 57 --g~------------------~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~a 116 (437)
T cd05298 57 --YP------------------EIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYG 116 (437)
T ss_pred --CC------------------CeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHH
Confidence 00 015888999999999999999987431
Q ss_pred -----hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 -----ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 -----~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++.+ ++.++..+|....
T Consensus 117 lRtip~~~~i~~~i~~~~p----da~lin~tNP~~~ 148 (437)
T cd05298 117 LRSIGPMIELIDDIEKYSP----DAWILNYSNPAAI 148 (437)
T ss_pred HhhHHHHHHHHHHHHHHCC----CeEEEEecCcHHH
Confidence 35567777777654 6899999988764
No 201
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.17 E-value=0.0042 Score=61.22 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=67.8
Q ss_pred ceEEEECCChHHH-HHHHHHHHhcCCCCCCeeEEEEecC-CchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+.-+ .+...|+...-.+.. .+|.|+|.+ +++++.+. . ..+. +....
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~-~ei~L~Did~~~rl~~v~--~---~~~~-------------~~~~~---- 57 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPV-TELVLVDIDEEEKLEIVG--A---LAKR-------------MVKKA---- 57 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCC-CEEEEecCChHHHHHHHH--H---HHHH-------------HHHhh----
Confidence 7999999998533 334445542011221 589999999 67665321 1 1110 01100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-----h-------------------------
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-----T------------------------- 171 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-----~------------------------- 171 (303)
.. ...+..|+|.++|+++||+||.++-. .
T Consensus 58 ---~~------------------~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~ 116 (419)
T cd05296 58 ---GL------------------PIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAK 116 (419)
T ss_pred ---CC------------------CeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHH
Confidence 00 02578899999999999999998732 1
Q ss_pred ------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 ------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++.+ ++.++..+|.+..
T Consensus 117 a~rni~ii~~i~~~i~~~~P----da~lin~TNP~~i 149 (419)
T cd05296 117 ALRTIPVILDIAEDVEELAP----DAWLINFTNPAGI 149 (419)
T ss_pred hhhhHHHHHHHHHHHHHHCC----CeEEEEecCHHHH
Confidence 23455566666553 6888988887654
No 202
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.17 E-value=0.011 Score=48.75 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=32.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
.+||+|+|+|.+|+.+|..|+.. |. .+++++|.+.=....+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDIVEPSNL 42 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSBB-GGGC
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcceeeccc
Confidence 37899999999999999999999 83 4899999986444333
No 203
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.17 E-value=0.004 Score=61.44 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
-++|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~r 247 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPIC 247 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCchh
Confidence 37999999999999999999887 8 789999998864
No 204
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.15 E-value=0.0014 Score=61.73 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=29.9
Q ss_pred CceEEEECCC-hHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG-~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++|+|||.| .||..+|..|.++ | +.|++|++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 3899999996 9999999999998 8 899999765
No 205
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.14 E-value=0.0031 Score=60.46 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.3
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+..++|+||+|+|.....++..++.. . +..||++++.+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCC
Confidence 45689999999999988877777643 3 6789998877655
No 206
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.14 E-value=0.0028 Score=60.34 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+.....+++|||+|.+|.+.+..|+...+. .+|++|+|++++.+++.++ +.. .+ +
T Consensus 125 a~~~~~~v~iiGaG~qA~~~~~al~~~~~i----~~v~V~~R~~~~a~~~a~~-----~~~-------------~~-g-- 179 (326)
T TIGR02992 125 AREDSSVVAIFGAGMQARLQLEALTLVRDI----RSARIWARDSAKAEALALQ-----LSS-------------LL-G-- 179 (326)
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCc----cEEEEECCCHHHHHHHHHH-----HHh-------------hc-C--
Confidence 334557999999999999999999742141 4799999999876542210 100 00 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~ 172 (303)
..+....++++++.+||+|+.|+|+..
T Consensus 180 ---------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 ---------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred ---------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 024456788888999999999999853
No 207
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.14 E-value=0.008 Score=58.40 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=105.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|.+|.|+|+|..+..+|..+.+. + +..|-++.|...+.++ +.+.+......++....|+.. ..+
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq~-----f~~aL~~~~~~~~v~vqn~~h-~~l----- 64 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQR-----FFEALARSDGLFEVSVQNEQH-QAL----- 64 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHHH-----HHHHHHhCCCEEEEeecchhh-hhh-----
Confidence 56899999999999999999876 5 2579999996654433 222222210000000001100 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+|-+ .+ .+..+.++...+.|.+|+|||..+..+|+++|..-.-+. -..+|-++..++
T Consensus 65 -----------~G~~---------~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~--vk~iVLvSPtfG 122 (429)
T PF10100_consen 65 -----------SGEC---------TIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR--VKSIVLVSPTFG 122 (429)
T ss_pred -----------cCeE---------EhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh--CCEEEEECcccc
Confidence 0100 11 133567777778999999999999999999987543222 234444554454
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCce----------EEEE-e--CChhhHHHHHHHhcC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYA----------NARI-C--GAEKWRKPLAKFLRR 266 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~----------~~~~-~--~~~~~~~~i~~lf~~ 266 (303)
.. .+++..+......+.+++=-+. +..+..+.+. .+.+ + .+......++.+|..
T Consensus 123 S~-----------~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~ 191 (429)
T PF10100_consen 123 SH-----------LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQ 191 (429)
T ss_pred hH-----------HHHHHHHHhcCCCceEEEeecccccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHH
Confidence 43 2233333211111233321111 1111122110 1122 2 234578999999999
Q ss_pred CCeEEEecCChhHHHH
Q 022050 267 PHFTVWDNGDLVTHEV 282 (303)
Q Consensus 267 ~g~~~~~~~Di~g~e~ 282 (303)
.|+.+..-+....+|-
T Consensus 192 ~gI~~~~~~~pl~AE~ 207 (429)
T PF10100_consen 192 LGIQLEVMDNPLEAES 207 (429)
T ss_pred cCCeEEEeCChHhhhh
Confidence 9999998888877764
No 208
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.13 E-value=0.0069 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
||+|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 83 4799999987
No 209
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.11 E-value=0.0048 Score=53.01 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=34.7
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+.-+|-++|-....-.. ++++|+|.|..|..+|..|... | .+|++++++|-
T Consensus 7 ~S~~d~i~r~t~~~l~G-k~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 7 QSLVDGIMRATNLMLAG-KRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHHHH-S--TT-SEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred hhHHHHHHhcCceeeCC-CEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 33455555554443333 7899999999999999999888 8 89999999984
No 210
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.10 E-value=0.0036 Score=50.57 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 159 ~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++|+||+++|.....+++..+.+.+.+ +++++.++.-+.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCcccc
Confidence 4899999999999988888766655566 788888775544
No 211
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.09 E-value=0.0077 Score=46.93 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=54.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|++|+|+|..|.+++..+....| +. +.++|.+++...+ ...
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g-----~~i~~~~dv~~~~~G~-------------------------~i~------ 46 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG-----FGIVAVFDVDPEKIGK-------------------------EIG------ 46 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC-----ECEEEEEEECTTTTTS-------------------------EET------
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC-----CCCEEEEEcCCCccCc-------------------------EEC------
Confidence 4689999999999999865555435 44 5678988864321 111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
.+.+..+.+++.+. .|+.+++||+...++++.++..
T Consensus 47 -------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 -------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp -------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred -------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 34444455555444 9999999999999888888765
No 212
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.06 E-value=0.0042 Score=57.36 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++++|+|+|.+|.+++..|++. | .+|++++|++++++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~~ 155 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAEE 155 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47899999999999999999998 8 799999999876543
No 213
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.02 E-value=0.0067 Score=53.79 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||.|+|+|.+|+.+|..|+.. |. .+++++|++.-....+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~ve~sNL 61 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDHVDLSNL 61 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCEEcccch
Confidence 37899999999999999999998 82 4899999986433333
No 214
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.02 E-value=0.003 Score=59.92 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+..+..+++|||+|..+..-+..++.- - +-.+|.+|+|++++.++... .+ +..
T Consensus 124 a~~d~~~l~iiG~G~qA~~~~~a~~~v-~---~i~~v~v~~r~~~~a~~~~~-----~~-----------------~~~- 176 (315)
T PRK06823 124 APQHVSAIGIVGTGIQARMQLMYLKNV-T---DCRQLWVWGRSETALEEYRQ-----YA-----------------QAL- 176 (315)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHH-----HH-----------------Hhc-
Confidence 345678999999999999998887764 1 12589999999987764221 00 000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
. ..+...++.++++++||+|+.++++.. .+++ ..++++ ++.|..
T Consensus 177 ------~--------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~ 220 (315)
T PRK06823 177 ------G--------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITA 220 (315)
T ss_pred ------C--------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEe
Confidence 0 135667889999999999999998764 3332 235666 666543
No 215
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.02 E-value=0.0031 Score=58.35 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=51.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||+|+||..++..+... + .. +.+ +.+++|++++.+++ .+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-~-~~-~~~l~~V~~~~~~~~~~~--------------------------~~------ 47 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-A-AQ-PCQLAALTRNAADLPPAL--------------------------AG------ 47 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-C-CC-ceEEEEEecCCHHHHHHh--------------------------hc------
Confidence 7999999999999999998754 2 10 133 34566665433210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHH
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a-~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
...+.+|+++. .+.+|+|++|-.++.+++....+..
T Consensus 48 ------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 ------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred ------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 12244566664 4678888888888887777776543
No 216
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.00 E-value=0.0028 Score=59.98 Aligned_cols=98 Identities=24% Similarity=0.324 Sum_probs=56.5
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....+++|||+|..|..-+..++.-.+ -.+|.+|+|++++.+++..+ ++ . + +
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~~~~~-----~~-------------~-~-~---- 177 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEAFAAR-----LR-------------D-L-G---- 177 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHHHHHH-----HH-------------C-C-C----
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHHHHHh-----hc-------------c-c-c----
Confidence 345799999999999999988876422 15899999999876542210 10 0 0 1
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+....|.++++++||+|+.|+|+.....+++ ..++++ ++.|.++
T Consensus 178 -------------------------~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~--~~~l~~---g~hi~~i 223 (313)
T PF02423_consen 178 -------------------------VPVVAVDSAEEAVRGADIIVTATPSTTPAPVFD--AEWLKP---GTHINAI 223 (313)
T ss_dssp -------------------------TCEEEESSHHHHHTTSSEEEE----SSEEESB---GGGS-T---T-EEEE-
T ss_pred -------------------------ccceeccchhhhcccCCEEEEccCCCCCCcccc--HHHcCC---CcEEEEe
Confidence 146778899999999999999999875212222 235566 6655443
No 217
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.98 E-value=0.0052 Score=57.89 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=29.2
Q ss_pred EECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 48 VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|.+|+++|..|+.. +.. .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 699999999999999987 732 37999999887654
No 218
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.97 E-value=0.0031 Score=59.43 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=64.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+..+++|||+|..|..-+..++.-.. -.+|.+|+|++++.+++.+ .+.+ .+ +
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~----i~~v~v~~r~~~~a~~f~~-----~~~~-------------~~-~----- 167 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYN----PKRIRVYSRNFDHARAFAE-----RFSK-------------EF-G----- 167 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----CCEEEEECCCHHHHHHHHH-----HHHH-------------hc-C-----
Confidence 56899999999999998888876312 1589999999987764321 1110 00 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+....++++++++||+|+-++++.. .+++ ..++++ ++.|.
T Consensus 168 ------------------------~~v~~~~~~~eav~~aDIV~taT~s~~--P~~~--~~~l~p---g~hV~ 209 (301)
T PRK06407 168 ------------------------VDIRPVDNAEAALRDADTITSITNSDT--PIFN--RKYLGD---EYHVN 209 (301)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC--cEec--HHHcCC---CceEE
Confidence 136667889999999999999999863 2332 235566 55543
No 219
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.97 E-value=0.012 Score=48.83 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||.|+|+|.+|+.++..|+.. |. ..++++|.+.-...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~v~~~ 37 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDTVELS 37 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCCcCcc
Confidence 689999999999999999998 83 47999998854333
No 220
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.96 E-value=0.005 Score=57.18 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=45.0
Q ss_pred CcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+|-++=.|-.-.--+..+++..+. ....+++.|+|+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~~ 162 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAEE 162 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 444443444444444445432222 12347899999999999999999987 72 589999999876643
No 221
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.94 E-value=0.0078 Score=53.23 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||+|+|+|.+|+.++..|+.. |. ..++++|.+.-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCcc
Confidence 37899999999999999999999 93 57999998853
No 222
>PRK06046 alanine dehydrogenase; Validated
Probab=96.90 E-value=0.0042 Score=59.12 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=62.1
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....+|+|||+|.+|...+..++...+ + ..|.+|+|++++.+++..+ ++ +
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~-i---~~v~v~~r~~~~~~~~~~~-----~~----------------~----- 176 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFD-L---EEVRVYDRTKSSAEKFVER-----MS----------------S----- 176 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-c---eEEEEECCCHHHHHHHHHH-----HH----------------h-----
Confidence 456899999999999999988875412 1 5799999998776542210 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
.++ ..+....|.+++++ +|+|+.|+|+.. .+++ ..++++ ++.|.+
T Consensus 177 ----~~~------------------~~v~~~~~~~~~l~-aDiVv~aTps~~--P~~~--~~~l~~---g~hV~~ 221 (326)
T PRK06046 177 ----VVG------------------CDVTVAEDIEEACD-CDILVTTTPSRK--PVVK--AEWIKE---GTHINA 221 (326)
T ss_pred ----hcC------------------ceEEEeCCHHHHhh-CCEEEEecCCCC--cEec--HHHcCC---CCEEEe
Confidence 000 12455678888886 999999999863 2222 234565 666543
No 223
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.89 E-value=0.0039 Score=59.50 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=65.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
++|+|+|+|.+|.++|..|..- | ..+.-+.|++...+.. .+ +.
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F-g-----~~i~y~~r~~~~~~~~--------~~--------------~~--------- 205 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF-G-----CVILYHSRTQLPPEEA--------YE--------------YY--------- 205 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc-c-----ceeeeecccCCchhhH--------HH--------------hc---------
Confidence 7999999999999999999875 5 4555556655422210 00 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
-. ..|..+.+.++|+|+++.|-. .++.++ +++-.++++ +.+||.+..|=.
T Consensus 206 ------------------------~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~i 257 (336)
T KOG0069|consen 206 ------------------------AE-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGAI 257 (336)
T ss_pred ------------------------cc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEecccccc
Confidence 00 134566778999999999996 467666 345666777 788888887755
Q ss_pred cc
Q 022050 202 AE 203 (303)
Q Consensus 202 ~~ 203 (303)
.+
T Consensus 258 id 259 (336)
T KOG0069|consen 258 ID 259 (336)
T ss_pred cc
Confidence 54
No 224
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.86 E-value=0.0023 Score=63.02 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=33.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..+|+|+|+|.||..++..|... |. .+|++++|+.++.+
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERAE 218 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 37899999999999999999887 72 57999999986543
No 225
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.84 E-value=0.0024 Score=62.83 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.9
Q ss_pred hhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-.++..++.++... .+||.|||+|.||.+++..|+.. |. .+++++.|+.++.+.
T Consensus 167 ~Av~la~~~~~~l~--~kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~~ 220 (414)
T PRK13940 167 SAITLAKRQLDNIS--SKNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQK 220 (414)
T ss_pred HHHHHHHHHhcCcc--CCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 34455556664433 26899999999999999999988 72 479999999876543
No 226
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.84 E-value=0.0056 Score=61.06 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
-++++|+|.|.+|..+|..+... | .+|+++++++..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~~ 289 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPIC 289 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 37999999999999999999887 8 789999988754
No 227
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.84 E-value=0.0079 Score=57.78 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=32.4
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+.++...++|+||+|+|.....++..++.. . ++.||++++.+-.
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhc
Confidence 444544689999999999988877777643 3 6788888876544
No 228
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.80 E-value=0.0039 Score=58.66 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~ 79 (303)
-++|+||| .|.||..+|..|.++ | +.|++|+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 48999999 999999999999998 8 8999995
No 229
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.79 E-value=0.0068 Score=52.97 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+ |.+|..++..|++. | ++|++++|+.++++.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~~ 67 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQK 67 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 379999996 99999999999998 8 899999999776543
No 230
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.78 E-value=0.0098 Score=48.13 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=52.9
Q ss_pred ceEEEEC----CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 44 ~kI~VIG----aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
++|+||| .+.+|..+...|.++ | ++|+.+....+.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999998 8 88888877654221
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
..+...++++.-...|++++++|+....++++++...
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 2334445555336789999999999999999998764
No 231
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.75 E-value=0.0054 Score=59.76 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|||+|+|| |..|..+...|..+ . .++++.+.++..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~s 74 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADRK 74 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChhh
Confidence 5689999999 99999999999876 3 268888887543
No 232
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.72 E-value=0.0081 Score=57.21 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~ 82 (303)
++||+|+|+|+||...+..+.++.+ .++. ++++++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999988876522 5554 578875
No 233
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.71 E-value=0.0096 Score=56.12 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=32.1
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|+|+|.+|+.+|..|+.. |. .+++++|.+.-....++
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-GV----g~ItlvD~D~Ve~sNL~ 40 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-GV----RHITFVDSGKVSYSNPV 40 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEeccccCC
Confidence 689999999999999999998 93 57899988754333333
No 234
>PRK04148 hypothetical protein; Provisional
Probab=96.71 E-value=0.0081 Score=50.06 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||.+||+| .|..+|..|++. | ++|+.+|.+++.++.++..+ ..... .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~~---------------------~~~v~---d 65 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKLG---------------------LNAFV---D 65 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHhC---------------------CeEEE---C
Confidence 3899999999 999999999998 8 99999999998765432110 00000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~ 186 (303)
.+ +..++ +..++||+|.-.=|+..+..-+-+|++.+..
T Consensus 66 ------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 66 ------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 01 12233 3467999999999998887777778876664
No 235
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.68 E-value=0.019 Score=53.16 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.+....||.|+|+|.+|.+.|..+..+ |. . .++.++|-++++++- +.+.-+| ...+++
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-~L-a--del~lvDv~~dklkG-------E~MDLqH--------~s~f~~--- 73 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-GL-A--DELVLVDVNEDKLKG-------EMMDLQH--------GSAFLS--- 73 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-hh-h--hceEEEecCcchhhh-------hhhhhcc--------cccccc---
Confidence 333457999999999999999998877 62 2 479999999987642 1111110 000000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------hHHHHHHHHHHHhhc
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------ETKEVFEEISRYWKE 186 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~------------~~~~vl~~l~~~l~~ 186 (303)
.+++....|.. +-.+++++|++.-.. .--++++.|.|.+-.
T Consensus 74 --------------------------~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ 126 (332)
T KOG1495|consen 74 --------------------------TPNVVASKDYS-VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVK 126 (332)
T ss_pred --------------------------CCceEecCccc-ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 14677777775 457899999988432 122344444443321
Q ss_pred cCCCCEEEEeeccCcc
Q 022050 187 RITVPVIISLAKGVEA 202 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~ 202 (303)
..++++++..+|.++.
T Consensus 127 ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 127 YSPDCILLVVSNPVDI 142 (332)
T ss_pred cCCCeEEEEecCchHH
Confidence 1127888888887654
No 236
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.67 E-value=0.014 Score=55.93 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||+|||+|.+|+.+|..|+.. |. ..++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GI----GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCc
Confidence 37899999999999999999999 82 3899999986
No 237
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.67 E-value=0.0065 Score=51.80 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=32.1
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 46 I~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+|+|+ |.+|..++..|.++ | ++|+++.|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789998 99999999999999 8 99999999988654
No 238
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.66 E-value=0.015 Score=55.72 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.5
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
.+.+..+.++...++|+||.++|+....+..+...
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHH
Confidence 35566677777778999999999987776666543
No 239
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.65 E-value=0.011 Score=56.59 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=60.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|+|| |..|..+...|+++ ++ +..++..+.++.+.-+.+ .+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~l------------------------~~~g~---- 49 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKEL------------------------SFKGK---- 49 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCee------------------------eeCCc----
Confidence 479999999 99999999999987 61 112456666654321110 01100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.+.......++++|+||+|+|.....++.+++.. . +..||++...+
T Consensus 50 -------------------------~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 50 -------------------------ELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred -------------------------eeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 122221111235789999999999988887776543 3 56788776543
No 240
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.62 E-value=0.0079 Score=58.33 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
...||+|+|+|.+|...+..+... | .+|+++++++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 457899999999999999999887 8 78999999987654
No 241
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.62 E-value=0.01 Score=47.02 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=31.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|.|+|.|.+|..++..|.+. + .+|++++++++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~ 36 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEE 36 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHH
Confidence 68999999999999999987 6 699999999987654
No 242
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0093 Score=57.09 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....+.|+.||.+.||..++.-++.+ | +.|..|.|...++++.-.+ + .++.
T Consensus 3 q~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~flan-------e--------------ak~~-- 53 (487)
T KOG2653|consen 3 QTPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEFLAN-------E--------------AKGT-- 53 (487)
T ss_pred CccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHHHHH-------h--------------hcCC--
Confidence 34568899999999999999999999 9 8999999999888753211 1 0110
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~---a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
++.-..++++ -++....|++-||.- .++.++++|.+++.+ +-+||.
T Consensus 54 ---------------------------~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiIID 103 (487)
T KOG2653|consen 54 ---------------------------KIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDIIID 103 (487)
T ss_pred ---------------------------cccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEEEe
Confidence 1111233444 346788999999886 588899999999998 778886
Q ss_pred eeccCcc
Q 022050 196 LAKGVEA 202 (303)
Q Consensus 196 ~~nGi~~ 202 (303)
--|.--.
T Consensus 104 GGNs~y~ 110 (487)
T KOG2653|consen 104 GGNSEYQ 110 (487)
T ss_pred CCcccCc
Confidence 5554333
No 243
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.60 E-value=0.015 Score=63.06 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCC---------CCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (303)
.++||+|||||.||...+..|++. ..+. +...|++.|++.+.++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 367999999999999999999886 3111 0013888888876554
No 244
>PRK11579 putative oxidoreductase; Provisional
Probab=96.58 E-value=0.018 Score=54.98 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=23.4
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 149 ~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.+.+|.++.++ +.|+|++++|+....++..+.
T Consensus 51 ~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~a 84 (346)
T PRK11579 51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAA 84 (346)
T ss_pred ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHH
Confidence 35577888774 579999999998766555543
No 245
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.58 E-value=0.0093 Score=58.06 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
..+..+++|||+|..+..-...++.- - ..-.+|.+|+|++++.++... .+.+ .+++.
T Consensus 152 r~da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~f~~-----~~~~-------------~~~~~-- 208 (379)
T PRK06199 152 RKDSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDSFAT-----WVAE-------------TYPQI-- 208 (379)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHHHHH-----HHHH-------------hcCCC--
Confidence 34568999999999999999888763 1 001589999999987764221 1110 00000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----HHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----TKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~----~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+.+..+.++++++||+|+-|+++.. ...+++ ..++++ ++.|.
T Consensus 209 --------------------------~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkp---G~hv~ 256 (379)
T PRK06199 209 --------------------------TNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK--REWVKP---GAFLL 256 (379)
T ss_pred --------------------------ceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec--HHHcCC---CcEEe
Confidence 036667889999999999999997532 122332 245666 66664
No 246
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.57 E-value=0.029 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||+|+|+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 36899999999999999999998 83 5799999984
No 247
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.57 E-value=0.0046 Score=59.83 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=30.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhh
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (303)
|.|+|+|.+|..++..|++. + ++ +|++.+|+.+++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999998 4 14 89999999987654
No 248
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.54 E-value=0.0056 Score=60.03 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=41.5
Q ss_pred hhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..+..++.++... .+|+.|||||-||...|..|+.+ |. .+|++..|+.+++.+
T Consensus 165 Av~lA~~~~~~L~--~~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 165 AVELAKRIFGSLK--DKKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred HHHHHHHHhcccc--cCeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 3444556666422 37899999999999999999998 83 689999999887654
No 249
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.51 E-value=0.015 Score=54.66 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCceEEEECCChHH-HHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG-~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+|||+|.++ ...+..+... +.. - .-|-+++++++++++..+ .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~-~-~~vav~d~~~~~a~~~a~-------------------------~---- 49 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG-L-ELVAVVDRDPERAEAFAE-------------------------E---- 49 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc-e-EEEEEecCCHHHHHHHHH-------------------------H----
Confidence 35899999999655 4577777765 400 0 246678899876543110 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
+ ++ ...+|.++.+++ .|+|++++|+....++...- +.. ++.| -+-
T Consensus 50 -----~--------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~A---L~a---GkhV-l~E 97 (342)
T COG0673 50 -----F--------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAA---LEA---GKHV-LCE 97 (342)
T ss_pred -----c--------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHH---Hhc---CCEE-EEc
Confidence 0 11 356778887764 59999999998766655332 333 4443 356
Q ss_pred ccCccc
Q 022050 198 KGVEAE 203 (303)
Q Consensus 198 nGi~~~ 203 (303)
|.+..+
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 665553
No 250
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.50 E-value=0.02 Score=51.59 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.+|..|+.. |. ..++++|.+.-....++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL~ 62 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDVVELSNLQ 62 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEEcCcccc
Confidence 36899999999999999999998 93 58999998764444443
No 251
>PRK08328 hypothetical protein; Provisional
Probab=96.40 E-value=0.035 Score=50.32 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|..|+.++..|+.. |. .+++++|.+.-....++
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELSNLN 68 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChhhhc
Confidence 36899999999999999999998 83 57999998875554444
No 252
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.40 E-value=0.0066 Score=53.26 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=34.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||| |..|+.|+.-..++ | |+|+.+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 89999999 99999999999999 8 99999999998764
No 253
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.40 E-value=0.0096 Score=51.47 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=34.1
Q ss_pred hhhHHHHHhccCCCCCceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-++-++...... .-+||.|||+|-| |..+|..|... | .+|++.+|+.
T Consensus 31 ~v~l~~~~~~~l--~gk~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDL--AGKKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCC--CCCEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECCc
Confidence 344444444322 3489999999997 88899999988 8 6888888764
No 254
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.38 E-value=0.011 Score=60.25 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-+|.|+|+|.+|..+|..|.++ | ++|+++|.|++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~ 455 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDE 455 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 5799999999999999999998 8 899999999987764
No 255
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.37 E-value=0.034 Score=52.50 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (303)
++||+|||+|.+|+.+...+.+. .. .++ -++++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~-~~----velvAVvdid~es 41 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS-EH----LEPGAMVGIDPES 41 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC-CC----cEEEEEEeCChhh
Confidence 47999999999999988777754 21 454 467888753
No 256
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.36 E-value=0.035 Score=49.11 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCcC
Confidence 37899999999999999999999 93 67999998753
No 257
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.31 E-value=0.02 Score=51.68 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~ 82 (303)
.+||.|+|+|.+|.++|..|+.. |. . +|++++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 37999999999999999999988 82 3 799999983
No 258
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.26 E-value=0.044 Score=49.98 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.+|..|+.. |. ..++++|.+.-....++
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccccCcc
Confidence 36899999999999999999998 83 57999999875544444
No 259
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.22 E-value=0.048 Score=52.31 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=33.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..||.|||+|.+|+.+|..|+.. |. .+++++|.+.-....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~Ve~sN 63 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDYVEWSN 63 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCccCHHH
Confidence 47899999999999999999999 92 489999998643333
No 260
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.21 E-value=0.022 Score=57.05 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=33.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++++|+|+|.+|.+++..|++. | .+|++++|++++++
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~ 369 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAE 369 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 47899999999999999999998 8 78999999876554
No 261
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.20 E-value=0.027 Score=48.03 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.-++|.|||+|.+|...+..|.+. | ++|++++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCc
Confidence 348999999999999999999998 8 899999643
No 262
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.20 E-value=0.023 Score=52.94 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=34.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|||+|-+|.+++..|++. |. .+|++++|+.++.++
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 47899999999999999999988 82 479999999876654
No 263
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.18 E-value=0.063 Score=50.33 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (303)
+||+|||+|.||..++..+.+. .. .++ -++++++++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~----~elvaV~d~d~es 38 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EH----LEMVAMVGIDPES 38 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CC----cEEEEEEeCCccc
Confidence 7899999999999887777654 21 454 467888764
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.17 E-value=0.012 Score=43.98 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.4
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
||+|||+|..|.-+|..|+.. | .+|+++.+.+.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 689999999999999999998 8 8999999998755
No 265
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.17 E-value=0.031 Score=53.62 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~ 65 (303)
+|+||+|+|| |..|..+...|.++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 3489999999 99999999999976
No 266
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.07 E-value=0.051 Score=49.69 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-....+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL 72 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDTVSLSNL 72 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEECcchh
Confidence 47999999999999999999998 83 5899999886444433
No 267
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.05 E-value=0.038 Score=49.04 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=30.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-++|.|||+|.+|...+..|.+. | .+|++++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence 47999999999999999999998 8 8999998753
No 268
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.04 E-value=0.019 Score=55.14 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=42.8
Q ss_pred ccCCchhhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||.+.+-+..+.-+.+++.. -..++|.|+|| |.||+.++..|+...|. .++++++|++++++
T Consensus 133 ~T~~ll~~~V~la~~~lg~~-l~~k~VLVtGAtG~IGs~lar~L~~~~gv----~~lilv~R~~~rl~ 195 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGID-LSKATVAVVGATGDIGSAVCRWLDAKTGV----AELLLVARQQERLQ 195 (340)
T ss_pred hHHHHHHHHHHHhHHHhccC-cCCCEEEEEccChHHHHHHHHHHHhhCCC----CEEEEEcCCHHHHH
Confidence 34444444555555666642 23489999999 89999999999853131 48999999876554
No 269
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.97 E-value=0.02 Score=53.54 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=28.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEE
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~ 78 (303)
-++|+|||. |.||..+|..|.++ | +.|++|
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 389999999 99999999999998 8 899998
No 270
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.96 E-value=0.046 Score=56.37 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE 91 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~ 91 (303)
..||.|+|||..|+.+|..|+.. |. .+++++|.+.=....++.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GV----g~ItlVD~D~Ve~SNL~RQ 381 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GV----RHITFVDNGKVSYSNPVRQ 381 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEECCCccccc
Confidence 47999999999999999999998 93 5799999876433334333
No 271
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.95 E-value=0.0099 Score=57.62 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|.+|+|||+|.+|.++|..|++. | ++|++++++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 35899999999999999999998 8 8999999975
No 272
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.081 Score=48.84 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=75.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|.|| |.||..+...+.+. . +.+ +-.++|.+....- +... .+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~g----------~d~g-----------e~~g~--- 52 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSLG----------SDAG-----------ELAGL--- 52 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCccccc----------cchh-----------hhccc---
Confidence 699999999 99999999999876 3 133 3345666542110 0000 01110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+ . -.+.+++|+.....++|++|=.+-|....+.++....+ +..+|.-|-|+
T Consensus 53 -~--~--------------------~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTGf 103 (266)
T COG0289 53 -G--L--------------------LGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 103 (266)
T ss_pred -c--c--------------------cCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCCC
Confidence 0 0 13456666666778999999988887776666654432 34556677788
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE 239 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e 239 (303)
+.+.. +.+.++.- .+.++..|||+--
T Consensus 104 ~~e~~---------~~l~~~a~----~v~vv~a~NfSiG 129 (266)
T COG0289 104 TEEQL---------EKLREAAE----KVPVVIAPNFSLG 129 (266)
T ss_pred CHHHH---------HHHHHHHh----hCCEEEeccchHH
Confidence 87521 23444332 1336678888653
No 273
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.94 E-value=0.023 Score=58.53 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=35.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|+|.|.+|..++..|.+. | ++++++|.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 47899999999999999999988 7 899999999987764
No 274
>PRK06153 hypothetical protein; Provisional
Probab=95.91 E-value=0.044 Score=53.39 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.||+|||+|..|+.++..||+. |. .+++++|.+.=
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~V 211 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDDF 211 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCEe
Confidence 6899999999999999999998 83 58999998853
No 275
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.87 E-value=0.043 Score=51.30 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (303)
.+++.|+|+|-.|.+++..|++. | . +|++++|+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~-G-----~~~V~I~~R~~~ 161 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALD-G-----AKEITIFNIKDD 161 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCch
Confidence 36899999999999999999998 8 5 5999999973
No 276
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.83 E-value=0.12 Score=50.10 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..||.|+|+|.+|+.++..|+.. |. .+++++|.+.=..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ve~ 78 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDTVDV 78 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCEEcc
Confidence 36899999999999999999998 83 5899999985333
No 277
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.81 E-value=0.13 Score=49.71 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=32.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..||+|+|+|.+|+.++..|+.. |. ..++++|.+.=..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ve~ 65 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDTVDL 65 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCEEcc
Confidence 36899999999999999999998 83 5899999986333
No 278
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.75 E-value=0.052 Score=53.96 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 42 ~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.+++|+|||+ |.+|..+...|.+. |+ . .+|+.+.+..+.+ .
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf-~--g~v~~Vnp~~~~i-----------------------------~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GY-K--GKIYPVNPKAGEI-----------------------------L-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CC-C--CcEEEECCCCCcc-----------------------------C--
Confidence 3578999999 88999999999887 71 1 2565555543211 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
.+.+..++++.-...|+++++||+....++++++... . -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 1223344555445689999999999999999997653 2 23456678
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88865
No 279
>PRK08223 hypothetical protein; Validated
Probab=95.71 E-value=0.083 Score=49.55 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=43.6
Q ss_pred CchhhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 23 GSLEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.+.++|...=..+++..... ..||.|||+|.+|+.++..|+.. |. ..++++|.+.=....++
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~Ve~SNLn 68 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDVFELRNFN 68 (287)
T ss_pred ccHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCCcchhccc
Confidence 34566655433444444322 36899999999999999999999 93 58999999864444444
No 280
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.71 E-value=0.019 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|||.|.|+ |.+|+.++..|.+. | ++|+..+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChHH
Confidence 79999997 99999999999998 8 899999998653
No 281
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.68 E-value=0.015 Score=56.35 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=31.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|+|||+|.+|.+.|..|++. | ++|++++++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 6899999999999999999998 8 8999999975
No 282
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.16 Score=48.30 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=107.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++.++.++|+|.....+|..+..+ | +..+-+++|...+-++ +.+.++.. ...++++... .
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rse~-----l~qala~~---------~ql~l~~q~e-a 62 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRSER-----LKQALALT---------PQLYLQGQGE-A 62 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchhHH-----HHHHHhcC---------CeEEEEeccH-H
Confidence 567899999999999999999887 7 3678888887654433 33333321 1122322100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH-HhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~-~l~~~~~~~iivs~~nGi 200 (303)
.+.+ +|-+ .--.+..|++++..+.+-+|+|||..+..+++++|.- .++. .+..++||-+ +
T Consensus 63 -hr~l-------eg~~--------~id~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~-vk~viLiSpt--f 123 (431)
T COG4408 63 -HRQL-------EGSV--------TIDCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ-VKSVILISPT--F 123 (431)
T ss_pred -HHhh-------cCce--------ehhHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc-ccEEEEeccc--c
Confidence 0000 0000 0011346788888899999999999999999999753 3332 1123344433 3
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEE--------------eCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhc
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYL--------------GGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~--------------~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~ 265 (303)
+.. ..+++.+.. +|.. ..|+ .-|+++-.-+-.+..+... -.+...++++..+|.
T Consensus 124 Gsn-------~lv~~~mnk-~~~d---aeViS~SsY~~dTk~id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~a 192 (431)
T COG4408 124 GSN-------LLVQNLMNK-AGRD---AEVISLSSYYADTKYIDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLA 192 (431)
T ss_pred ccc-------HHHHHHHhh-hCCC---ceEEEeehhcccceeecccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHH
Confidence 332 223333332 2221 2222 2344443322211111111 135568899999999
Q ss_pred CCCeEEEecCChhHHH
Q 022050 266 RPHFTVWDNGDLVTHE 281 (303)
Q Consensus 266 ~~g~~~~~~~Di~g~e 281 (303)
..|+.+..-+.+..+|
T Consensus 193 q~~I~v~~~esp~~AE 208 (431)
T COG4408 193 QHGIDVEPCESPLAAE 208 (431)
T ss_pred hcCCceEEcCChhhhh
Confidence 9999999888887766
No 283
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.58 E-value=0.15 Score=49.46 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||+|+|+|..|+.++..|+.. |. .+++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 46899999999999999999998 83 4799999985
No 284
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.52 E-value=0.1 Score=48.76 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=51.6
Q ss_pred cCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 38 ~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.....+.||++||+|.+-...-...... | .+..|.-+|++++..+..+ + ++++ ..++
T Consensus 116 ~~~~~p~rVaFIGSGPLPlT~i~la~~~-~---~~~~v~~iD~d~~A~~~a~--~---lv~~--------------~~~L 172 (276)
T PF03059_consen 116 HAGDPPSRVAFIGSGPLPLTSIVLAKQH-G---PGARVHNIDIDPEANELAR--R---LVAS--------------DLGL 172 (276)
T ss_dssp --TT---EEEEE---SS-HHHHHHH--H-T---T--EEEEEESSHHHHHHHH--H---HHH-----------------HH
T ss_pred cCCcccceEEEEcCCCcchHHHHHHHHh-C---CCCeEEEEeCCHHHHHHHH--H---HHhh--------------cccc
Confidence 3333467999999999988754444333 3 0146788999998654311 1 1110 0111
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEe-cCH---HHHhcCCCEEEEecCch----hHHHHHHHHHHHhhccCC
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVV-TNL---QEAVWDADIVINGLPST----ETKEVFEEISRYWKERIT 189 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~d~---~~a~~~aDlVIiaVp~~----~~~~vl~~l~~~l~~~~~ 189 (303)
+ ..+++. .|. ...+.++|+|++|---. .+.+++++|.+++++
T Consensus 173 ----~-----------------------~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~--- 222 (276)
T PF03059_consen 173 ----S-----------------------KRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP--- 222 (276)
T ss_dssp ----------------------------SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T---
T ss_pred ----c-----------------------CCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC---
Confidence 0 023322 222 22356889999998665 799999999999998
Q ss_pred CCEEEE-eeccC
Q 022050 190 VPVIIS-LAKGV 200 (303)
Q Consensus 190 ~~iivs-~~nGi 200 (303)
++.|+. ..+|+
T Consensus 223 ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 223 GARLVVRSAHGL 234 (276)
T ss_dssp TSEEEEEE--GG
T ss_pred CcEEEEecchhh
Confidence 675543 44443
No 285
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.045 Score=54.00 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred CceEEEECCChHHHHH--HHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVF--TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~ai--A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.+||+|||+|+.+..- ...+.+. -.|.. .++.|+|.++++++.+. .+.++ +.+..
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~-e~l~~-~el~L~Did~~r~~~i~------~~~~~------------~v~~~--- 59 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLART-EELPV-RELALYDIDEERLKIIA------ILAKK------------LVEEA--- 59 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcC-ccCCc-ceEEEEeCCHHHHHHHH------HHHHH------------HHHhh---
Confidence 4799999999877653 2223332 22332 58999999998765321 11110 11111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~ 170 (303)
.. ...+..++|.++|+++||+|+.++-.
T Consensus 60 ----g~------------------~~kv~~ttd~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 60 ----GA------------------PVKVEATTDRREALEGADFVITQIRV 87 (442)
T ss_pred ----CC------------------CeEEEEecCHHHHhcCCCEEEEEEee
Confidence 00 02578899999999999999998844
No 286
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.51 E-value=0.028 Score=53.95 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhh
Q 022050 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (303)
Q Consensus 54 mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 133 (303)
||..||..+..+ | ..+++.+.+...+++.+ +.+...+++.. ..+ .+.+. +.
T Consensus 1 MG~gia~~~~~~-~-----i~~vl~~~n~~~~~~~~-~~v~a~l~~~~----~~~----~~~~~-------~~------- 51 (380)
T KOG1683|consen 1 MGAGIAIVFILA-G-----IRTVLVDANVALLARGI-LQLAAHLNSEV----KRG----RLSGL-------ER------- 51 (380)
T ss_pred CcchHHHHHHHc-C-----CcEEEEeccHHHHHHhH-HHHHHhhhHHH----hhc----ccccc-------ch-------
Confidence 788999999999 8 89999999987665432 22323333221 000 01100 00
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccC
Q 022050 134 DGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRII 211 (303)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~ 211 (303)
+.....+.-+.|..+ +.++|+++.+|-+. .+.+++.+|...+++ ++++-++++.+..... .....
T Consensus 52 --------~~~~~~L~~~~Dy~~-~~~~dmvieav~edl~Lk~~l~~~le~v~~~---~~i~gsntSs~~~~~i-sa~ld 118 (380)
T KOG1683|consen 52 --------EKTKSNLVETLDYTG-FANADMVIEAVFEDLELKHELFKSLEKVEPP---KCIRGSNTSSLDINVI-SAGLD 118 (380)
T ss_pred --------hhhhhhccccccccc-ccccceeccchhhhHHHHHHHHHHHHhhcCC---cceeeeccccCChHHH-hhccC
Confidence 111124555566554 78999998888775 588999999999998 7888888888776532 12345
Q ss_pred CHHHHHHhHhCCC
Q 022050 212 TPTQMINRATGVP 224 (303)
Q Consensus 212 ~~~~~i~~~l~~~ 224 (303)
+++.++..|+-.|
T Consensus 119 ~~e~vvg~h~fsp 131 (380)
T KOG1683|consen 119 RPEMVVGMHFFSP 131 (380)
T ss_pred chhhhccccccCH
Confidence 5666666555433
No 287
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.48 E-value=0.14 Score=49.43 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=29.9
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.+.|++|+|+|...-.++..++.. . ++.||++++-+-.
T Consensus 65 ~~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~fR~ 104 (347)
T PRK06728 65 SFEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSEYRM 104 (347)
T ss_pred HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchhhcC
Confidence 35789999999999977777776532 3 6788888866543
No 288
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.46 E-value=0.14 Score=46.68 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=32.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|+|+|.+|+.++..|+.. |. .+++++|.+.=....++
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~Ve~sNLn 40 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDTIDVSNLN 40 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCEEcchhhc
Confidence 689999999999999999998 83 57999999864444333
No 289
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.41 E-value=0.066 Score=47.61 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 46 I~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|+ |.+|..++..|.+. + ++|++..|++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789998 99999999999998 7 99999999984
No 290
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.37 E-value=0.22 Score=46.72 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+++.|+|+|-.+.+++..|+.. |. .+|++++|+++
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 36899999999999999999987 72 58999999965
No 291
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.36 E-value=0.11 Score=48.66 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=46.5
Q ss_pred CcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+|-++=.|-.-.-=+..|++.-......-++++|+|||-.+.+++..|++. |. .+|+++.|+.++.++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~----~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GA----KRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 565555554443333444432211122348899999999999999999998 82 579999999987654
No 292
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.35 E-value=0.14 Score=49.23 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=29.9
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 156 ~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+++.++|+||+|+|.....++..++.. . ++.||.++.-+-
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~fR 104 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAFR 104 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchhh
Confidence 346789999999999977777776432 3 678888886553
No 293
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.33 E-value=0.061 Score=50.44 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.9
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++|+|||.|. +|..+|..|... | ..|+++.+.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 38999999988 999999999988 7 789888764
No 294
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.27 E-value=0.13 Score=53.39 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=35.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..+|.|+|+|.+|..++..|.++ | ++++++|.|+++++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~~ 439 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIETL 439 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHHH
Confidence 47899999999999999999998 8 8999999999887653
No 295
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.24 E-value=0.19 Score=47.65 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=33.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|+|+|.+|+.++..|+.. |. .+++++|.+.-....++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~sNLn 40 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDLSNLN 40 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcchhhcC
Confidence 689999999999999999999 93 58999998875444443
No 296
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.22 E-value=0.093 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=28.7
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
...++|++|+|+|...-.++.+++.. . ++.||.++.-+-
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadfR 85 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAHR 85 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhhh
Confidence 34679999999999977777776543 3 677888775543
No 297
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.20 E-value=0.099 Score=41.78 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=32.0
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 149 ~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
..++++++.+. +.|+||.|..+....+.+.+ .+.. +..||+..||...
T Consensus 46 ~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~---~L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 46 AFTTDLEELIDDPDIDVVVECTSSEAVAEYYEK---ALER---GKHVVTANKGALA 95 (117)
T ss_dssp CEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHH---HHHT---TCEEEES-HHHHH
T ss_pred cccCCHHHHhcCcCCCEEEECCCchHHHHHHHH---HHHC---CCeEEEECHHHhh
Confidence 35678887777 89999999888776655544 4454 6788888887544
No 298
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.1 Score=49.97 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++||+|+|+ |.-|.-+...|+.+ . ..++.++..++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 689999999 99999999999987 3 25665555443
No 299
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.14 E-value=0.095 Score=41.24 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|.|||+|.+|..=+..|.+. | .+|++++++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 347899999999999999999998 8 8999999985
No 300
>PRK07877 hypothetical protein; Provisional
Probab=95.12 E-value=0.074 Score=55.92 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=40.4
Q ss_pred hhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
++|.+.-+.+++..+.. ..||+|+|+| +|+.+|..|+.. |.+ ..++++|.+.=...++|
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ve~sNLn 148 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDTLELSNLN 148 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCEEcccccc
Confidence 35555444555554433 4789999999 999999999998 811 37899998764333333
No 301
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.10 E-value=0.17 Score=48.53 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+.+||+|+|| |..|.-+...|+++ . + +..++.++..+.. ..+ ...+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG~-----------------------~~~~~~~--- 52 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AGE-----------------------TLRFGGK--- 52 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CCc-----------------------eEEECCc---
Confidence 4589999999 99999999999984 2 1 1156666644422 110 0011110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~-a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.+. +.++ ...++|++|+|+|...-.++.+++.. . ++.||.++.-
T Consensus 53 --------------------------~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 53 --------------------------SVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred --------------------------ceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 13332 2222 23689999999999977777766533 3 6788888866
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+-.
T Consensus 100 fRl 102 (336)
T PRK08040 100 FAL 102 (336)
T ss_pred hcC
Confidence 543
No 302
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.084 Score=49.97 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++..+-||+|||.|..|+--|+....- | .+|++.|++.+++.
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl~ 205 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRLR 205 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHHh
Confidence 334467999999999999977666554 6 79999999987654
No 303
>PRK06753 hypothetical protein; Provisional
Probab=95.09 E-value=0.029 Score=53.47 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=32.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|.|||+|.-|.+.|..|++. | ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999999 9 89999998875
No 304
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.03 E-value=0.1 Score=50.09 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.5
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|++|+|+|.....++.+++. .. +..||++...+
T Consensus 58 ~~~~~D~v~~a~g~~~s~~~a~~~~---~~---G~~VID~ss~~ 95 (339)
T TIGR01296 58 SFEGIDIALFSAGGSVSKEFAPKAA---KC---GAIVIDNTSAF 95 (339)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHH---HC---CCEEEECCHHH
Confidence 4578999999999998887777653 33 66788777544
No 305
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.93 E-value=0.1 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
++||+|+|+|.||..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
No 306
>PRK07411 hypothetical protein; Validated
Probab=94.92 E-value=0.2 Score=48.93 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|||+|.+|+.+|..|+.. |. ..++++|.+.-....++
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ve~sNL~ 79 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDVVDSSNLQ 79 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEecccccC
Confidence 47899999999999999999999 93 57999998864444443
No 307
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.92 E-value=0.041 Score=52.48 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=38.9
Q ss_pred HHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 32 ~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|.+..++ ..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 8 ~~~~~~~~~-~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 8 FMCKEKPPP-TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred hhcccCCCC-CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 668877766 458999999999999999999998 8 89999998764
No 308
>PRK10206 putative oxidoreductase; Provisional
Probab=94.89 E-value=0.13 Score=49.19 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=23.3
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 149 ~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.+.+|.++.++ +.|+|++++|+....++..+.
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~a 84 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRA 84 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHH
Confidence 35577888774 579999999998765555443
No 309
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.78 E-value=0.22 Score=48.67 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||.|||+|.+|+.+|..|+.. |. ..++++|.+.-....+
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL 82 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDVVDESNL 82 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEecCccc
Confidence 46899999999999999999998 83 5799999886444333
No 310
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.75 E-value=0.23 Score=47.60 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=27.1
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
...++|+||+++|+....++.+++.. . ++.+|.++.-+
T Consensus 70 ~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDlsg~f 107 (341)
T TIGR00978 70 ASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNASNH 107 (341)
T ss_pred HhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECChhh
Confidence 45789999999999987777765433 2 56677666443
No 311
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.74 E-value=0.072 Score=49.91 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.1
Q ss_pred CceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 43 PLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 43 ~~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
-++++|||.|.+ |..+|..|... | ..|+++..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVt~~hs 190 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTICHS 190 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEecC
Confidence 379999999888 99999999887 7 78887643
No 312
>PRK05868 hypothetical protein; Validated
Probab=94.73 E-value=0.039 Score=53.14 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|++|+|+|+|..|.+.|..|++. | ++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCCC
Confidence 57899999999999999999998 8 899999998753
No 313
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.69 E-value=0.048 Score=50.56 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.+|+|||+|.-|.++|..|+++ | ++|+++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 9 999999998764
No 314
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.66 E-value=0.31 Score=45.70 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||.|+|+|.+|+-+|..|+.. |. ..++++|.+.-....++
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~ve~snL~ 60 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPCSWSDLS 60 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCccchhhcc
Confidence 36899999999999999999999 93 58999998864444433
No 315
>PRK07236 hypothetical protein; Provisional
Probab=94.63 E-value=0.054 Score=52.16 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 48999999999999999999999 8 89999999864
No 316
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.59 E-value=0.29 Score=47.00 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.5
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
++||+|+| .|.+|..+...|... . ..+++.+.+++.+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~~~ 40 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASERS 40 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcChhh
Confidence 47999998 599999999999876 4 1477777555543
No 317
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.54 E-value=0.23 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.3
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
.+||+|+|+|.||..++..|.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 37999999999999999998754
No 318
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.40 E-value=0.056 Score=51.95 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 47899999999999999999998 8 89999999875
No 319
>PRK07588 hypothetical protein; Provisional
Probab=94.40 E-value=0.051 Score=52.29 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|||+|..|.+.|..|++. | ++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 6899999999999999999999 9 89999998765
No 320
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.37 E-value=0.19 Score=50.90 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..|++|+|+|.+|...+..+... | ..|+++++++++++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle~ 202 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999988887776 8 679999999876553
No 321
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.36 E-value=0.06 Score=51.83 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 446899999999999999999999 8 8999999975
No 322
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.35 E-value=0.2 Score=48.62 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=29.3
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCC--CEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~--~iivs~~nGi~~ 202 (303)
...++|++|+|.|.....++..++.. . + ++||++++-+-.
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~fR~ 103 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTLRM 103 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHHhC
Confidence 35789999999999977777776543 2 5 568888766543
No 323
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.33 E-value=0.16 Score=38.51 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
..++++|+|+|.+|..++..+.+. + ..+|.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 347999999999999999999987 5 168999998
No 324
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.31 E-value=0.34 Score=46.66 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=28.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~ 87 (303)
..||+|||+ .||...+..+... . ++.+ |-++++++++.++
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~-~---~~~eLvaV~d~~~erA~~ 43 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAA-P---ERFELAGILAQGSERSRA 43 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhC-C---CCcEEEEEEcCCHHHHHH
Confidence 479999999 6899888888765 2 0134 4568888876543
No 325
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.30 E-value=0.068 Score=49.62 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.|+|||+|-.|.++|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999999 9 899999998
No 326
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.11 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
++|.|||.|.+|.++|..|.+. | ++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence 6899999999999999999998 8 889999987654
No 327
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.22 E-value=0.067 Score=51.74 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 47899999999999999999999 9 99999998764
No 328
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.19 E-value=0.26 Score=47.32 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-.+|+|+|+|-+|..-.+ +|++.| .+|+.+++++++.+.
T Consensus 167 G~~V~I~G~GGlGh~avQ-~Aka~g-----a~Via~~~~~~K~e~ 205 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQ-YAKAMG-----AEVIAITRSEEKLEL 205 (339)
T ss_pred CCEEEEECCcHHHHHHHH-HHHHcC-----CeEEEEeCChHHHHH
Confidence 379999999988876444 455337 799999999987653
No 329
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.17 E-value=0.5 Score=44.42 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 41 ~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
....||.|.|. |.+|..+...|.+. | ++ .+|-.++.. .+. .
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~-g-----~~-~v~pVnp~~~~~~--------------------------v---- 48 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAY-G-----TN-IVGGVTPGKGGTT--------------------------V---- 48 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHC-C-----CC-EEEEECCCCCCCe--------------------------E----
Confidence 34579999999 88999999999876 7 55 444444321 000 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+++..+.+++-+. .|+.+++||...+.+++++.... . -..++.+
T Consensus 49 ---------------------------~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~-g----vk~avI~ 96 (291)
T PRK05678 49 ---------------------------LGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA-G----IDLIVCI 96 (291)
T ss_pred ---------------------------eCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC-C----CCEEEEE
Confidence 124444566665554 79999999999999999886652 1 2345667
Q ss_pred eccCcc
Q 022050 197 AKGVEA 202 (303)
Q Consensus 197 ~nGi~~ 202 (303)
+.|+..
T Consensus 97 s~Gf~~ 102 (291)
T PRK05678 97 TEGIPV 102 (291)
T ss_pred CCCCCH
Confidence 788764
No 330
>PRK07538 hypothetical protein; Provisional
Probab=94.16 E-value=0.061 Score=52.30 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|||+|--|.++|..|++. | ++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 7899999999999999999999 8 89999999874
No 331
>PRK06847 hypothetical protein; Provisional
Probab=94.16 E-value=0.07 Score=50.79 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=32.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++|+|||+|.-|.+.|..|++. | ++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 57899999999999999999998 8 89999998764
No 332
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.12 E-value=0.076 Score=49.35 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=45.5
Q ss_pred hhhhhHHHHHhccCCC---CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~---~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.+|.+...++++.... ...+|+|+|+|.+|+.+|..|++. |. .+++++|.+.-....+|
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~~sNln 71 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVCVTNTN 71 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEecccccc
Confidence 4577777777775542 247899999999999999999999 83 58999998865444444
No 333
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.07 E-value=0.058 Score=51.75 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=31.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|.|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 8 89999999764
No 334
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.04 E-value=0.4 Score=42.62 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
-+||.|||+|.+|..-+..|.+. | .+|++++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCCC
Confidence 36999999999999999999998 8 89999998653
No 335
>PLN03075 nicotianamine synthase; Provisional
Probab=94.03 E-value=0.62 Score=43.92 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+.+|+.||+|..|..-...++.. . . +..++.+|.+++.++..++ .+.. ..++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~--p-~~~~~giD~d~~ai~~Ar~-----~~~~--------------~~gL---- 175 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L--P-TTSFHNFDIDPSANDVARR-----LVSS--------------DPDL---- 175 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C--C-CCEEEEEeCCHHHHHHHHH-----Hhhh--------------ccCc----
Confidence 568999999999887644444333 1 1 1469999999987654221 0100 0111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEe-cCHHH---HhcCCCEEEEec----CchhHHHHHHHHHHHhhccCCCCEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVV-TNLQE---AVWDADIVINGL----PSTETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~d~~~---a~~~aDlVIiaV----p~~~~~~vl~~l~~~l~~~~~~~ii 193 (303)
. .++++. .|..+ ...+.|+|++.+ -.....++++.+.+++++ +..+
T Consensus 176 ~-----------------------~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkP---GG~L 229 (296)
T PLN03075 176 S-----------------------KRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAP---GALL 229 (296)
T ss_pred c-----------------------CCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCC---CcEE
Confidence 0 123322 22222 135799999995 124678899999999998 5655
Q ss_pred E
Q 022050 194 I 194 (303)
Q Consensus 194 v 194 (303)
+
T Consensus 230 v 230 (296)
T PLN03075 230 M 230 (296)
T ss_pred E
Confidence 4
No 336
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.99 E-value=0.08 Score=50.41 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+++|+|||+|-+|.+.|..|++. | .+|+++++++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 357899999999999999999999 8 8999999876
No 337
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.97 E-value=0.072 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.+|+++|..|++. | ++|++++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 3599999999999999999999 8 8999999875
No 338
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.94 E-value=0.26 Score=46.76 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 156 ~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+..+++|++|+|+|.....++.+.+. .. ++.||.++.-+
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~---~~---g~~VIDlSadf 83 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVD---NP---NTCIIDASTAY 83 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHH---hC---CCEEEECChHH
Confidence 44578999999999987777776653 23 57788777554
No 339
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.91 E-value=0.22 Score=47.54 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=27.7
Q ss_pred cCCCEEEEecCchh-HHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 159 WDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 159 ~~aDlVIiaVp~~~-~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++|++|.++|+.. -......+.+.+.. +..||+..||...
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~---G~hVVTaNKgalA 121 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEH---GIDVVTANKSGLA 121 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHC---CCEEEcCCHHHHH
Confidence 46899999998532 12235555666776 7788888887543
No 340
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.86 E-value=0.11 Score=37.80 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=27.1
Q ss_pred EECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 48 VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999999 8 89999999874
No 341
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=93.86 E-value=0.12 Score=53.71 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=39.2
Q ss_pred chhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+..|.+.+..+.+........|+|||+|..|.++|..|+.. | .+|.+++++.
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~d 104 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERED 104 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeccc
Confidence 345565555554322222346899999999999999999999 9 8999999863
No 342
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=93.85 E-value=0.21 Score=47.56 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..|+|+|-|| |.+|+.|...|.++ | |.|....|+++.-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~~ 43 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPEDE 43 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcchh
Confidence 4589999999 99999999999999 9 8999999999763
No 343
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.84 E-value=0.2 Score=47.07 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=32.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|||+|.+|+.++..|+.. |. .+++++|.+.-....++
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~Ve~SNLn 40 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDTIDVSNLN 40 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEecccccC
Confidence 689999999999999999998 93 57999998764444444
No 344
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.83 E-value=0.12 Score=47.90 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.++++.|-|| +-+|..+|..||++ | ++|+|+.|++++++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~la 47 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEALA 47 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHHH
Confidence 3468999999 99999999999999 9 99999999999887654
No 345
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.78 E-value=0.25 Score=46.35 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.0
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|||-|. +|..+|..|... | ..|+++.+.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs~ 192 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHRF 192 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEECC
Confidence 37999999988 999999999887 6 788887653
No 346
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=93.72 E-value=0.27 Score=42.18 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=49.8
Q ss_pred HHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhccc
Q 022050 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAY 113 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 113 (303)
..+......-++|++.|||+=|.++...+--. . +.=..++|.++.+. +.+
T Consensus 59 ~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K~-------------------------G~~ 108 (160)
T PF08484_consen 59 EFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLKQ-------------------------GKY 108 (160)
T ss_dssp HHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGGT-------------------------TEE
T ss_pred HHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhhc-------------------------Ccc
Confidence 44433334458899999999999998887543 2 02245788887532 135
Q ss_pred chhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCE
Q 022050 114 LKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~i 192 (303)
.++. ++.+.+ +++.. ...|+||+ .+..+.+++.+++..+... +..
T Consensus 109 ~PGt-----------------------------~ipI~~-p~~l~~~~pd~viv-law~y~~EI~~~~~~~~~~---gg~ 154 (160)
T PF08484_consen 109 LPGT-----------------------------HIPIVS-PEELKERKPDYVIV-LAWNYKDEIIEKLREYLER---GGK 154 (160)
T ss_dssp -TTT-------------------------------EEEE-GGG--SS--SEEEE-S-GGGHHHHHHHTHHHHHT---T-E
T ss_pred cCCC-----------------------------CCeECC-HHHHhhCCCCEEEE-cChhhHHHHHHHHHHHHhc---CCE
Confidence 5542 233322 23322 34798777 6788899999999988776 444
Q ss_pred EE
Q 022050 193 II 194 (303)
Q Consensus 193 iv 194 (303)
+|
T Consensus 155 fi 156 (160)
T PF08484_consen 155 FI 156 (160)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 347
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.56 E-value=0.094 Score=49.95 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.|+|||+|.+|.+.|..|+++ | .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999999 8 8999999853
No 348
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.50 E-value=0.57 Score=45.94 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=29.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
...+.|+|.|.+|..++..|.+. | .+|++++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 35799999999999999999887 7 789888866
No 349
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.50 E-value=0.095 Score=50.94 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (303)
|||+|||+|--|.+.|..|++. | + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999998 7 5 8999999865
No 350
>PRK00536 speE spermidine synthase; Provisional
Probab=93.49 E-value=0.67 Score=42.96 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=61.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+++||.|||+|--|. ++-+.+. . .+|++++.|++.++..+ .+++.+.+.+
T Consensus 72 ~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~k----------------------~~lP~~~~~~ 121 (262)
T PRK00536 72 ELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSFI----------------------SFFPHFHEVK 121 (262)
T ss_pred CCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHHH----------------------HHCHHHHHhh
Confidence 468999999998554 4556555 3 58999999998765322 1344332111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.| ++++......+.- +..|+||+=.. .-++.++.+.+.|++ +.++ ++++|
T Consensus 122 ~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~--~~~~fy~~~~~~L~~---~Gi~-v~Qs~ 172 (262)
T PRK00536 122 NN----------------------KNFTHAKQLLDLDIKKYDLIICLQE--PDIHKIDGLKRMLKE---DGVF-ISVAK 172 (262)
T ss_pred cC----------------------CCEEEeehhhhccCCcCCEEEEcCC--CChHHHHHHHHhcCC---CcEE-EECCC
Confidence 11 2444443343322 56899998732 225677788888888 5654 45655
No 351
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.49 E-value=0.22 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.2
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|+|+|. .|.++|..|... | ..|+++.+.
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~~ 192 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHSR 192 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeCC
Confidence 37999999998 999999999988 7 789988873
No 352
>PRK06185 hypothetical protein; Provisional
Probab=93.39 E-value=0.11 Score=50.13 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...|+|||+|..|.++|..|++. | ++|+++++++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 36799999999999999999998 8 89999998753
No 353
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.29 E-value=0.54 Score=45.09 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++|+|+|.+|...+..+... |. ..|++.|+++++++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga----~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GA----SVVIVVDRSPERLEL 208 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CC----ceEEEeCCCHHHHHH
Confidence 899999999999976666555 72 578899999987764
No 354
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.20 E-value=1.2 Score=41.77 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..||+|.|- |.+|..+-..+... | .+ .+|..++..-. ..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g-----~~-~v~~V~p~~~~----------------------------~~v---- 46 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-G-----TN-IVGGVTPGKGG----------------------------TTV---- 46 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-C-----CC-EEEEECCCCCc----------------------------cee----
Confidence 478999998 99999999898776 7 66 56666653100 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
..+++..+.+++.+. .|+.+++||+..+.+++++.... . -..++.++.|
T Consensus 47 ------------------------~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~-G----vk~avIis~G 97 (286)
T TIGR01019 47 ------------------------LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA-G----IELIVCITEG 97 (286)
T ss_pred ------------------------cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECCC
Confidence 134444566665444 69999999999999999887652 1 1345667888
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+..
T Consensus 98 f~e 100 (286)
T TIGR01019 98 IPV 100 (286)
T ss_pred CCH
Confidence 754
No 355
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.18 E-value=0.11 Score=50.28 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.+.|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46899999999999999999999 9 999999998
No 356
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.10 E-value=0.14 Score=46.94 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCC----C--CCCeeEEEEecCCchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----L--RDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~----~--~~~~~V~l~~r~~~~~~~~~ 89 (303)
+..||.|||+|..|+.++..||+. |. + ..+.+++++|.+.=....++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~Ve~sNLn 62 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDTVSEANVG 62 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCEEccchhh
Confidence 458999999999999999999986 41 0 00127899998764333333
No 357
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.08 E-value=0.11 Score=54.08 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||+|.+|.++|..|++. | .+|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 9 8999999874
No 358
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.05 E-value=0.12 Score=50.10 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.||+|||+|.-|.+.|..|++. | ++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999998 9 89999998875
No 359
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.04 E-value=0.13 Score=49.77 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 6799999999999999999999 9 89999999874
No 360
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.01 E-value=0.49 Score=47.88 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...||+|+|+|.+|..-+..+... | .+|+.+|+++++++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-G-----A~V~a~D~~~~rle~ 203 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-G-----AIVRAFDTRPEVAEQ 203 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 357999999999999877777666 8 789999999987654
No 361
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.00 E-value=0.15 Score=45.91 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
.+|||.|+|+ |.+|..++..|+.+ | ++|+++.|++++.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 54 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDKA 54 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHHH
Confidence 3689999996 99999999999998 8 8999999987643
No 362
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.00 E-value=0.12 Score=49.68 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=30.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.+|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCCC
Confidence 46799999999999999999999 8 8999999863
No 363
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.96 E-value=0.17 Score=48.05 Aligned_cols=47 Identities=21% Similarity=0.061 Sum_probs=38.3
Q ss_pred hhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...++|..+.+.. |||.|.|+ |.+|+.++..|.++ | ++|+.++|...
T Consensus 3 ~~~~~~~~~~~~~---~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~~ 50 (348)
T PRK15181 3 AYEELRTKLVLAP---KRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFST 50 (348)
T ss_pred hhhhhhhcccccC---CEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 3456666665544 89999997 99999999999998 8 89999998654
No 364
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=92.86 E-value=0.6 Score=45.31 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=29.6
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCC--CEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~--~iivs~~nGi~~ 202 (303)
...+.|++|.|.++...+++..+++. . + +++|++++-+-.
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~---a---G~~~~VIDnSSa~Rm 102 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSLRM 102 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHh---C---CCCeEEEECChhhhc
Confidence 46789999999999877777666543 2 5 678888876544
No 365
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.86 E-value=0.14 Score=48.70 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 489999999999999999998 8 8999999864
No 366
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=92.80 E-value=0.14 Score=48.70 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 89999999999999999999 9 89999999875
No 367
>PTZ00367 squalene epoxidase; Provisional
Probab=92.78 E-value=0.21 Score=51.27 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..+|.|||+|..|.++|..|++. | ++|.+++|++
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 36899999999999999999999 9 8999999976
No 368
>PRK07045 putative monooxygenase; Reviewed
Probab=92.75 E-value=0.15 Score=48.96 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.++|+|||+|.-|.+.|..|+++ | ++|+++++.++.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCcc
Confidence 46899999999999999999999 9 899999988753
No 369
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.73 E-value=0.15 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+++|.|||+|..|+..|..|++. | .+|+++++.+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccC
Confidence 46899999999999999999999 9 8999999644
No 370
>PRK08013 oxidoreductase; Provisional
Probab=92.69 E-value=0.14 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|+|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999998 9 89999999875
No 371
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=92.68 E-value=0.15 Score=49.60 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999999 9 89999998754
No 372
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.68 E-value=0.38 Score=48.96 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=33.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|.+|.+++..|++. | .+|++++|+.++.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~-G-----~~V~i~nR~~e~a~~ 417 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEK-G-----ARVVIANRTYERAKE 417 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 36899999999999999999998 8 789999998765543
No 373
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.67 E-value=0.42 Score=44.72 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=34.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|-.|.+++..|++. |. .+|++++|+.++.++
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 47899999999999999999987 72 579999999877654
No 374
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.67 E-value=0.51 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.0
Q ss_pred CceEEEECCChHHHHHHHHHHH
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD 64 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~ 64 (303)
.+||+|+|.|++|+.++..|.+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 3799999999999999999877
No 375
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.61 E-value=0.14 Score=49.47 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHH-hcCCCCCCe-eEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQD-SYGYLRDKV-LIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~-~~G~~~~~~-~V~l~~r~~ 82 (303)
.|+|||+|.+|+++|..|++ . | . +|++++++.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~-g-----~~~V~vle~~~ 65 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEH-G-----ITNVAVLEKGW 65 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhc-C-----CCeEEEEEccc
Confidence 69999999999999999998 4 5 4 899999863
No 376
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.59 E-value=0.16 Score=48.89 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|.|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4799999999999999999999 9 8999999764
No 377
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.19 Score=44.55 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
||+.|.|+ |.+|.+++..|++. | ++|++.+|++++++.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~~ 39 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLEV 39 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 58999998 89999999999998 8 899999998776543
No 378
>PLN02686 cinnamoyl-CoA reductase
Probab=92.58 E-value=0.3 Score=46.95 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCchhhhhhHHHHHhccC-------------------------CCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeE
Q 022050 22 NGSLEERLDELRRLMGKA-------------------------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI 75 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V 75 (303)
+-+++.-++|||+..... ....++|.|.|+ |.+|+.++..|++. | ++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G-----~~V 80 (367)
T PLN02686 7 TESMEAEVEEFRAALLLSRGGDDDGWRGSRGGGKEANAGDAGADAEARLVCVTGGVSFLGLAIVDRLLRH-G-----YSV 80 (367)
T ss_pred cHhHHHHHHHHHHHHHhcccCCccccccccCccccccccccccCCCCCEEEEECCchHHHHHHHHHHHHC-C-----CEE
Confidence 347788888888732211 123478999998 99999999999999 8 899
Q ss_pred EEEecCCchh
Q 022050 76 RIWRRPGRSV 85 (303)
Q Consensus 76 ~l~~r~~~~~ 85 (303)
+++.|+.+..
T Consensus 81 ~~~~r~~~~~ 90 (367)
T PLN02686 81 RIAVDTQEDK 90 (367)
T ss_pred EEEeCCHHHH
Confidence 9888876544
No 379
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.58 E-value=0.2 Score=50.46 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.1
Q ss_pred ccCCCCCceEEEECCChHHHHHHHHHHH--hcCCCCCCeeEEEEecCCc
Q 022050 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 37 ~~~~~~~~kI~VIGaG~mG~aiA~~La~--~~G~~~~~~~V~l~~r~~~ 83 (303)
++.....+||+|||+|.-|.+-|..|++ . | ++|++|++.+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~ 62 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPT 62 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCC
Confidence 3444456899999999999999999987 5 6 89999999874
No 380
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.55 E-value=0.16 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 36899999999999999999998 8 8999999875
No 381
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.49 E-value=0.18 Score=51.32 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+||+|||||.-|.+-++.|.+. | .+++++.++++-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCCC
Confidence 7999999999999999999998 9 899999998753
No 382
>PRK14851 hypothetical protein; Provisional
Probab=92.49 E-value=0.61 Score=48.90 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.3
Q ss_pred hhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
++|.+.-..+++..+.. ..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-...++|
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~-GV----G~l~LvD~D~ve~sNLN 84 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRT-GI----GRFHIADFDQFEPVNVN 84 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHh-CC----CeEEEEcCCEecccccc
Confidence 34444433444433322 47899999999999999999999 93 57899998764444444
No 383
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.48 E-value=1.1 Score=37.47 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=24.6
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
++++++++||+|+.++....+ ++ ..++++ +++++.
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vid 98 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVIN 98 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEE
Confidence 455678899999999977632 22 345677 788774
No 384
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.46 E-value=0.18 Score=50.40 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||||.-|.+.|..|.+. | ++|+++.++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 47899999999999999999998 8 89999998764
No 385
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.39 E-value=0.37 Score=48.14 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||.|+|+|..|.++|..|.+. | .+|+++|++..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~-G-----~~V~~~D~~~~ 49 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSEL-G-----CDVVVADDNET 49 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCChH
Confidence 347899999999999999999998 8 89999997653
No 386
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.36 E-value=0.23 Score=44.79 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|++.|.|+ |.+|.++|..|++. | +.|.+.+|+++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~~ 39 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLEK 39 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 68999998 88999999999999 9 889999999876543
No 387
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=92.36 E-value=0.22 Score=49.49 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+.|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 347899999999999999999999 9 89999998754
No 388
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=92.34 E-value=0.24 Score=44.32 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+|.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 38 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERLQ 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 68999997 99999999999998 8 89999999987554
No 389
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.25 Score=43.92 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=33.6
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||+|.|.|+ |.+|..++..|+++ | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 478999996 99999999999998 8 89999999987554
No 390
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.22 E-value=0.25 Score=44.34 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=33.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+++.|.|+ |.+|..++..|++. | .+|.+++|+++.++.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLAA 40 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHH
Confidence 467999997 99999999999999 8 899999999876544
No 391
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=92.19 E-value=0.2 Score=48.41 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|.|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 6799999999999999999999 9 89999999874
No 392
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.16 E-value=1.7 Score=43.33 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=28.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCC--CeeEEEEecC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRD--KVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~--~~~V~l~~r~ 81 (303)
+.+|+|-|| |.+|.++...+|.. ..|-+ ...+.|+|.+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G-~~fG~~~~v~L~LlDi~ 163 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASG-EVFGMEEEISIHLLDSP 163 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCC-cccCCCCeEEEEEEcCC
Confidence 578999999 99999999999974 33321 1356677873
No 393
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.13 E-value=0.63 Score=42.09 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=37.5
Q ss_pred eccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEec
Q 022050 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRR 80 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r 80 (303)
..|.+....-++.+-+-+. ..-..+||+|.|.|++|..+|..|.+. | ..|+ +.|.
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~-~~l~~~~v~I~G~G~VG~~~a~~L~~~-g-----~~vv~v~D~ 63 (227)
T cd01076 8 EATGRGVAYATREALKKLG-IGLAGARVAIQGFGNVGSHAARFLHEA-G-----AKVVAVSDS 63 (227)
T ss_pred ccchHHHHHHHHHHHHhcC-CCccCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECC
Confidence 3455555444454443333 222458999999999999999999998 8 6776 5555
No 394
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.11 E-value=0.21 Score=45.36 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.++..|++. |. .+++++|.+.-....+|
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~V~~sNln 52 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDVVCVSNLN 52 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEECchhhc
Confidence 36899999999999999999999 93 58999998864444443
No 395
>PLN02985 squalene monooxygenase
Probab=92.09 E-value=0.25 Score=50.01 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+|.|||+|..|.+.|..|++. | ++|.+++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 46899999999999999999999 9 89999999753
No 396
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.08 E-value=0.77 Score=43.92 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=30.0
Q ss_pred hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 158 ~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+++|++|.|.+...-+++.+++.. . +.++|++++-+-.
T Consensus 64 ~~~~Divf~~ag~~~s~~~~p~~~~---~---G~~VIdnsSa~Rm 102 (334)
T COG0136 64 FSDVDIVFFAAGGSVSKEVEPKAAE---A---GCVVIDNSSAFRM 102 (334)
T ss_pred cccCCEEEEeCchHHHHHHHHHHHH---c---CCEEEeCCccccc
Confidence 4589999999998887777777654 2 7888888866544
No 397
>PRK08017 oxidoreductase; Provisional
Probab=91.94 E-value=0.25 Score=44.07 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=32.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.+++..|++. | ++|++++|++++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~~ 40 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDVA 40 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHhH
Confidence 47999999 99999999999998 8 89999999887654
No 398
>PRK14852 hypothetical protein; Provisional
Probab=91.91 E-value=0.53 Score=50.96 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=34.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.++..|+.. |. ..++++|.+.-....+|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra-GV----G~I~L~D~D~Ve~SNLN 373 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART-GI----GNFNLADFDAYSPVNLN 373 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEecccccc
Confidence 47899999999999999999998 83 57899988864444444
No 399
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.90 E-value=0.18 Score=48.82 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 3699999999999999999998 9 8999999876
No 400
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.81 E-value=0.27 Score=49.52 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHhccCCCCCceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCc
Q 022050 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~ 83 (303)
|-++... ..+||+|||+|.-|.+-|..|+ +. | ++|++|++.+.
T Consensus 31 ~~~~~~~-~~krVAIVGaGPAGlyaA~~Ll~~~-g-----~~VtlfEk~p~ 74 (506)
T PTZ00188 31 CFFTNEA-KPFKVGIIGAGPSALYCCKHLLKHE-R-----VKVDIFEKLPN 74 (506)
T ss_pred ccCCCCC-CCCEEEEECCcHHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 5555554 4589999999999999999765 55 7 89999999764
No 401
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.80 E-value=0.66 Score=43.53 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.5
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
-++++|||.|. +|..+|..|... | ..|+++..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVtv~hs 196 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR-N-----ATVSVCHV 196 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CEEEEEec
Confidence 38999999988 999999999887 6 78888774
No 402
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=91.79 E-value=0.23 Score=47.53 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|.-|.+.|..|++. | .+|+++++++.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 5799999999999999999998 8 89999998875
No 403
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.77 E-value=0.33 Score=42.76 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=33.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+++.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER-G-----WQVTATVRGPQQDT 39 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC-C-----CEEEEEeCCCcchH
Confidence 367899995 99999999999998 8 89999999987654
No 404
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.70 E-value=0.39 Score=42.98 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.|.|+ |.+|.+++..|++. | +.|++++|+++.++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA-G-----AHVLVNGRNAATLEA 50 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHH
Confidence 3478999998 89999999999998 8 899999999866543
No 405
>PRK07023 short chain dehydrogenase; Provisional
Probab=91.68 E-value=0.27 Score=43.73 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|.|.|+ |.+|..++..|++. | ++|.+++|+++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 579999998 99999999999998 8 89999999864
No 406
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.66 E-value=0.41 Score=42.81 Aligned_cols=37 Identities=14% Similarity=0.354 Sum_probs=33.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|..++..|+++ | ++|++.+|+++..+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~~ 49 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAALA 49 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 79999998 99999999999998 8 89999999876544
No 407
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=91.64 E-value=0.21 Score=48.35 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 9 899999985
No 408
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=91.56 E-value=0.28 Score=47.37 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhc-CCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~-G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.+|.++|..|++.. | .+|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g-----~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG-----ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 47999999999999999999751 4 7999999875
No 409
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=91.54 E-value=0.28 Score=49.93 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.+|.++|..|++. | .+|.+++++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5699999999999999999999 9 8999999864
No 410
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=91.53 E-value=0.22 Score=49.32 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|||+|..|+..|..||+. | .+|+++++.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 699999999999999999999 9 89999987654
No 411
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.53 E-value=0.85 Score=40.98 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~ 82 (303)
..+||+|.|.|++|+.+|..|.+. | . -|.+.|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G-----~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-G-----GKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C-----CEEEEEEcCCC
Confidence 348999999999999999999998 8 4 566677776
No 412
>PRK09126 hypothetical protein; Provisional
Probab=91.52 E-value=0.23 Score=47.58 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|.|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4699999999999999999999 9 89999999764
No 413
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=91.52 E-value=2 Score=40.11 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=42.0
Q ss_pred ecCHHHHhcC-CC-EEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccE
Q 022050 151 VTNLQEAVWD-AD-IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (303)
Q Consensus 151 t~d~~~a~~~-aD-lVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 228 (303)
..++.+.+.. +| ++|=.+.|..+.+.++... .. +..+|.-|.|+..+. .. .+.+.- .+
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~---~~---gv~~ViGTTG~~~~~--------~~-~l~~~~-----~i 117 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYG---KH---GIPFVMGTTGGDREA--------LA-KLVADA-----KH 117 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHHH---HC---CCCEEEcCCCCCHHH--------HH-HHHHhc-----CC
Confidence 4677776665 89 8787877776666554433 32 566777887887642 11 122221 13
Q ss_pred EEEeCCCcHHH
Q 022050 229 LYLGGPNIASE 239 (303)
Q Consensus 229 ~v~~GP~~a~e 239 (303)
.++..|||..-
T Consensus 118 ~~l~apNfSiG 128 (275)
T TIGR02130 118 PAVIAPNMAKQ 128 (275)
T ss_pred CEEEECcccHH
Confidence 46788998653
No 414
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.45 E-value=0.34 Score=42.91 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|+|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~~ 43 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAAE 43 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 99999999999998 8 88999999986654
No 415
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.39 E-value=0.42 Score=42.32 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++++.|.|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDALE 44 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 4578999997 99999999999998 8 89999999886544
No 416
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=91.38 E-value=0.89 Score=49.74 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=33.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.+|.|+|+|.+|+-+|..|+.. |. ..++++|.+.-....++
T Consensus 25 s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v~~sdL~ 65 (1008)
T TIGR01408 25 SNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKCQAWDLS 65 (1008)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCeecHhhCC
Confidence 6899999999999999999999 93 58999998764444333
No 417
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.35 E-value=0.32 Score=50.64 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||+|||+|..|...|..|++. | ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 89999998764
No 418
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.34 E-value=0.55 Score=47.13 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+||.|+|.|..|.+.+..|... | .+|+++|++++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~-G-----~~v~~~D~~~~ 46 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRF-G-----ARPTVCDDDPD 46 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence 36899999999999999988888 8 89999997654
No 419
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.31 E-value=0.27 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+.+|+|||+|-.|.++|..|++. | ++|+++++++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 357999999999999999999999 9 8999999976
No 420
>PRK06126 hypothetical protein; Provisional
Probab=91.23 E-value=0.3 Score=49.36 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 6899999999999999999999 9 89999998864
No 421
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.21 E-value=0.29 Score=48.73 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 89999998753
No 422
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=91.16 E-value=4 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.5
Q ss_pred ceEEEEC-C-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIG-a-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+||++|| . +++..+++..++.- | .+++++.+..
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 3 79999999999987 8 7788888766
No 423
>PRK06101 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.36 Score=42.97 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=33.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++++.|.|+ |.+|..++..|++. | ++|.+++|+++.++.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~-G-----~~V~~~~r~~~~~~~ 40 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQ-G-----WQVIACGRNQSVLDE 40 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHH
Confidence 357889997 99999999999998 8 899999998765543
No 424
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.09 E-value=0.34 Score=48.02 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 458999999999999999999998 8 89999998753
No 425
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=91.09 E-value=2.5 Score=39.01 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=35.8
Q ss_pred cCHHHHhc--CCCEEEEecC--chhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 152 TNLQEAVW--DADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 152 ~d~~~a~~--~aDlVIiaVp--~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++ ++|++|=... --..+++++.+..+.+ ..+|..++|....
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 146 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSK 146 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCc
Confidence 68999999 8998776443 3468999999988765 4688888887664
No 426
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=91.08 E-value=0.32 Score=44.06 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.|.|||+|..|.+.|..|++. | .+|.++++.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 489999999999999999998 8 89999999864
No 427
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=91.02 E-value=0.32 Score=47.37 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||||..|.++|..|++. | .+|.+++++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999988 8 8999998754
No 428
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.99 E-value=0.53 Score=41.79 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~~ 44 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGAE 44 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 99999999999998 8 89999999876544
No 429
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.90 E-value=0.33 Score=45.85 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||.|.|+ |.+|+.++..|.++.| ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 589999998 9999999999987414 78999998764
No 430
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.89 E-value=0.52 Score=42.19 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 48 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKLA 48 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 78999997 99999999999998 8 89999999986554
No 431
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.89 E-value=0.41 Score=47.74 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..+||+|||+|..|...|..|++. | ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 347999999999999999999998 8 8999998875
No 432
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.89 E-value=0.88 Score=42.30 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=33.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|+|+|-.+.+++..|++. |. .+|++++|++++.+.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~~a~~ 161 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA-GF----TDGTIVARNEKTGKA 161 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHHH
Confidence 5899999999999999999987 72 469999999876543
No 433
>PRK05993 short chain dehydrogenase; Provisional
Probab=90.88 E-value=0.4 Score=43.79 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.++|..|++. | ++|++.+|+++.++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVAA 43 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 57899998 99999999999998 8 899999999876543
No 434
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=90.88 E-value=0.34 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 35899999999999999999998 9 89999998874
No 435
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.80 E-value=0.51 Score=41.50 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|+|+ |.+|..++..|++. | ++|++++|++++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKELE 44 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHHH
Confidence 68999997 99999999999998 8 88999999886554
No 436
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.80 E-value=0.44 Score=42.70 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|+|+ |.+|.+++..|++. | ++|++.+|++...+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G-----~~v~~~~r~~~~~~ 45 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-G-----ATVVVGDIDPEAGK 45 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999999 99999999999998 8 89999999876543
No 437
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.78 E-value=0.33 Score=44.21 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 699999999999999999998 8 8999999764
No 438
>PRK08244 hypothetical protein; Provisional
Probab=90.73 E-value=0.32 Score=48.52 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCCC
Confidence 4699999999999999999999 9 899999997653
No 439
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.71 E-value=0.33 Score=50.44 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=32.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCCC
Confidence 347999999999999999999998 9 89999998753
No 440
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=90.67 E-value=0.39 Score=47.30 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||+|||+|.-|...|..|.+. + ++++|+++++++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~~ 37 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDRD 37 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCCC
Confidence 68999999999999999999875 3 1378999999863
No 441
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.64 E-value=0.45 Score=42.75 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=33.4
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++|.|.|+ |.+|.+++..|++. | ++|++.+|+++.+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 41 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-G-----ATLGLVARRTDALQA 41 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 368999996 89999999999998 8 899999998765543
No 442
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.64 E-value=2.6 Score=38.35 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.-+|+|. | .++..+++. |. ..|+.+|.++..++.
T Consensus 119 ~~~~VLDiGcGs-G-~l~i~~~~~-g~----~~v~giDis~~~l~~ 157 (250)
T PRK00517 119 PGKTVLDVGCGS-G-ILAIAAAKL-GA----KKVLAVDIDPQAVEA 157 (250)
T ss_pred CCCEEEEeCCcH-H-HHHHHHHHc-CC----CeEEEEECCHHHHHH
Confidence 448999999998 5 345556665 61 359999999987654
No 443
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=90.63 E-value=0.38 Score=48.70 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 46899999999999999999998 8 89999999875
No 444
>PRK06184 hypothetical protein; Provisional
Probab=90.63 E-value=0.35 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||+|..|.+.|..|++. | ++|+++++.++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence 5799999999999999999999 9 899999997654
No 445
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.54 E-value=0.4 Score=52.10 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
....+||+|||+|.-|.+-|..|++. | |+|+++++.+
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 33458999999999999999999999 9 9999999875
No 446
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.53 E-value=0.34 Score=50.25 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=32.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+||+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 58999999999999999999998 8 89999998864
No 447
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.50 E-value=0.38 Score=47.33 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.++|.|+|+|.+|.++|..|++. | ++|+++++++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 37899999999999999999999 9 8999999975
No 448
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.46 E-value=1.3 Score=40.03 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|.|||+|.++..=+..|.+. | .+|+++++.-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 447999999999999988888888 8 7999998764
No 449
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.40 E-value=0.63 Score=41.53 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=34.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|..++..|++. | ++|.+.+|+++..++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 46 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA-G-----AAVAIADLNQDGANA 46 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCChHHHHH
Confidence 368999999 99999999999998 8 899999999865543
No 450
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.38 E-value=0.31 Score=48.58 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++++|||||+-|.+-|+.|.+. | ++|+++.|+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCC
Confidence 47899999999999999999998 8 89998888764
No 451
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.34 E-value=0.42 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 347999999999999999999998 8 8999999864
No 452
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.33 E-value=0.55 Score=41.18 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|..++..|++. | ++|.+++|+++..+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~-g-----~~v~~~~r~~~~~~ 43 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD-G-----AKVVIYDSNEEAAE 43 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChhHHH
Confidence 68999998 99999999999998 8 88999999986554
No 453
>PRK12831 putative oxidoreductase; Provisional
Probab=90.31 E-value=0.47 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 458999999999999999999998 8 8999998754
No 454
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.29 E-value=0.57 Score=40.02 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+.||+|+|+|..|..-+..+..- | ++|+.++.+++..++
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~~ 58 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLRQ 58 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHHh
Confidence 368999999999999988888776 8 899999998876544
No 455
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.28 E-value=0.39 Score=46.23 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|||.|.|+ |.+|+.++..|.+. | ++|+.++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 3489999998 99999999999998 8 8999999864
No 456
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=90.26 E-value=0.45 Score=46.82 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...|.|||+|.-|++.|..|+++ | ++|.++++.+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCCC
Confidence 36799999999999999999999 9 89999998753
No 457
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.24 E-value=0.39 Score=44.36 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=31.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|||.|.|+ |.+|..++..|++. | ++|++++|+++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCcc
Confidence 68999997 99999999999998 8 899999998764
No 458
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=90.23 E-value=1.1 Score=42.06 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=33.0
Q ss_pred HHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 34 RLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.++....+..||+|+|| |-+|..+...|..+ -.. .+..|||...
T Consensus 19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~~ 64 (345)
T KOG1494|consen 19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIAN 64 (345)
T ss_pred ccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeeccc
Confidence 345555566789999998 89999999888776 211 2567888764
No 459
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.18 E-value=0.5 Score=43.84 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=33.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.++|..|+++ | ++|.+.+|+++.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~-G-----~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-G-----ATVVAVARREDLLDA 79 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67999998 99999999999998 8 899999999876554
No 460
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.14 E-value=0.69 Score=40.90 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=33.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|..+|..|++. | ++|.+++|+++.++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 46 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEARE 46 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 378999997 99999999999998 8 899999998776543
No 461
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=90.14 E-value=0.46 Score=47.93 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|.|||+|..|.++|..+++. | .+|.+++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5799999999999999999999 9 8999999863
No 462
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.10 E-value=0.53 Score=41.54 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|..++..|++. | ++|++.+|+++.++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~-g-----~~V~~~~r~~~~~~ 47 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQR-G-----ARVVAAARNAAALD 47 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 89999999999998 8 89999999876554
No 463
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.08 E-value=0.62 Score=44.17 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=34.0
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|.|+ |.+|.+++..|++. | ++|++++|+++.++.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~-G-----~~Vvl~~R~~~~l~~ 47 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR-G-----AKVVLLARGEEGLEA 47 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 368999998 99999999999999 8 899999999876553
No 464
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.03 E-value=0.69 Score=41.75 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|.++|..|++. | ++|++.+|+++.+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~~ 45 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA-G-----ARVAIVDIDADNGAA 45 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 368999998 99999999999999 9 899999999765543
No 465
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.99 E-value=0.42 Score=48.19 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.||+++|..|++. + ++.+|+++++..
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~ 40 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLD 40 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCC
Confidence 5799999999999999999984 2 116899999875
No 466
>PLN02214 cinnamoyl-CoA reductase
Probab=89.99 E-value=0.53 Score=44.70 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=33.8
Q ss_pred CCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 40 EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 40 ~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
....|+|.|.|+ |.+|+.++..|+++ | ++|+.++|+.+.
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~~ 46 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPDD 46 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCchh
Confidence 344678999998 99999999999999 8 899999998653
No 467
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.95 E-value=0.45 Score=40.94 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=25.4
Q ss_pred EEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCch
Q 022050 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (303)
Q Consensus 47 ~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (303)
+|||||.-|.+.|..|.+. | .+ |++++++++-
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCC
Confidence 5999999999999999999 8 67 9999998754
No 468
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.92 E-value=0.36 Score=52.38 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..+||+|||+|.-|.+.|..|+.. | |+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 458999999999999999999998 9 999999974
No 469
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=89.88 E-value=0.37 Score=47.42 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEEECCChHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~----~~G~~~~~~~V~l~~r~ 81 (303)
.|+|||+|..|.++|..|++ . | ++|+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 48999999999999999998 7 7 899999984
No 470
>PRK06949 short chain dehydrogenase; Provisional
Probab=89.87 E-value=0.56 Score=41.81 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=34.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|.|+ |.+|.+++..|++. | +.|++++|+++.++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~~ 48 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA-G-----AKVVLASRRVERLKE 48 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 378999997 99999999999998 8 789999999876554
No 471
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.86 E-value=0.63 Score=41.62 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|.+++..|++. | ++|.+.+|+++.+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~~ 48 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA-G-----AQVAIAARHLDALEK 48 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 67999998 89999999999999 9 899999998876543
No 472
>PRK11445 putative oxidoreductase; Provisional
Probab=89.84 E-value=0.42 Score=45.56 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=29.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++.|+|||+|.-|.+.|..|++. ++|+++++.++
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 46799999999999999999875 68999998864
No 473
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=89.83 E-value=0.5 Score=44.18 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||.|+|+ |.+|..++..|++. | ++|+++++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~~~~ 34 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVVILDNLC 34 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 78999996 99999999999998 8 8999988754
No 474
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=89.83 E-value=2.3 Score=39.75 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred cCHHHHhc--CCCEEEEec--CchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 152 ~d~~~a~~--~aDlVIiaV--p~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++ ++|++|=+. +--..+++++.+..+.+ +.+|..++|....
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 145 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE----RPIIFALSNPTSK 145 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC----CCEEEECCCcCCc
Confidence 57889998 889877655 33468999999988765 4688888887654
No 475
>PRK06953 short chain dehydrogenase; Provisional
Probab=89.75 E-value=0.54 Score=41.28 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+++.|.|+ |.+|..++..|++. | .+|++.+|+++.++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~-G-----~~v~~~~r~~~~~~ 39 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD-G-----WRVIATARDAAALA 39 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence 457888885 99999999999998 8 89999999876554
No 476
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=89.73 E-value=0.3 Score=53.31 Aligned_cols=78 Identities=22% Similarity=0.120 Sum_probs=50.9
Q ss_pred ccccCcceec-cCCchhhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCC-CCCeeEEEEecCCchh
Q 022050 11 SLSSNGLIHH-TNGSLEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSV 85 (303)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~-~~~~~V~l~~r~~~~~ 85 (303)
+|...|.+.+ +--...+|-|...++++..... ..||.|+|+|.+|+-++..|+.. |.- .++..++++|.+.=..
T Consensus 383 ~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~Ve~ 461 (1008)
T TIGR01408 383 SLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDLIEK 461 (1008)
T ss_pred hCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCEecc
Confidence 3444443333 2223467888777887765433 37899999999999999999998 820 0012789998876433
Q ss_pred hhhh
Q 022050 86 DRAT 89 (303)
Q Consensus 86 ~~~~ 89 (303)
..++
T Consensus 462 SNLn 465 (1008)
T TIGR01408 462 SNLN 465 (1008)
T ss_pred cccC
Confidence 3333
No 477
>PRK07890 short chain dehydrogenase; Provisional
Probab=89.72 E-value=0.57 Score=41.77 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.++|..|++. | ++|++.+|+++..+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 43 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARA-G-----ADVVLAARTAERLD 43 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 78999998 89999999999999 9 89999999886554
No 478
>PRK06194 hypothetical protein; Provisional
Probab=89.69 E-value=0.76 Score=41.88 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=33.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+++.|.|+ |.+|..++..|++. | ++|++++|+.+.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL-G-----MKLVLADVQQDALD 44 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 368999997 89999999999999 8 89999999876554
No 479
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=89.68 E-value=1.5 Score=41.97 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.0
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchh
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTE 172 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~ 172 (303)
.+.+..++++...++|+|++++|...
T Consensus 62 ~l~v~g~~eeLl~~vDiVve~Tp~~~ 87 (333)
T TIGR01546 62 GIEVAGTLEDLLEKVDIVVDATPGGI 87 (333)
T ss_pred ceEecCCHHHHhhcCCEEEECCCCCC
Confidence 35566678888889999999999864
No 480
>PRK08309 short chain dehydrogenase; Provisional
Probab=89.68 E-value=0.6 Score=40.51 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=31.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|++.|+|+..||..++..|++. | ++|.+.+|+++..+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~-G-----~~V~v~~R~~~~~~ 37 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK-G-----FHVSVIARREVKLE 37 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-c-----CEEEEEECCHHHHH
Confidence 6899999877888999999998 8 89999999876543
No 481
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=89.66 E-value=2.1 Score=38.28 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.-++|+|||+|..|..=+..|... | .+|+++....
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 347999999999999999999998 8 8999998876
No 482
>PRK06180 short chain dehydrogenase; Provisional
Probab=89.62 E-value=0.6 Score=42.57 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=33.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++|.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 42 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-G-----HRVVGTVRSEAARA 42 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-c-----CEEEEEeCCHHHHH
Confidence 367999998 99999999999998 8 89999999987554
No 483
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=89.62 E-value=0.48 Score=45.99 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++-|+|||||.-|++.|..|+++ | .+|.++++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 46799999999999999999999 9 89999999765
No 484
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=89.61 E-value=0.68 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|.|||+|.-|.+.|..+++. | .+|.+++++..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~-G-----~~V~vlEk~~~ 55 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKN-G-----LKVCVLERSLA 55 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 5699999999999999999998 8 89999999864
No 485
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.61 E-value=0.79 Score=40.56 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|..++..|++. | ++|++++|+++..+.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~-g-----~~V~~~~r~~~~~~~ 45 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA-G-----ATVILVARHQKKLEK 45 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCChHHHHH
Confidence 68999997 99999999999998 8 899999999875543
No 486
>PRK05693 short chain dehydrogenase; Provisional
Probab=89.61 E-value=0.58 Score=42.45 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+++.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA-G-----YEVWATARKAEDVE 39 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 467889997 89999999999998 8 89999999876554
No 487
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=89.57 E-value=0.43 Score=47.83 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|+|||--|.+-|..|++. | ++|+++.+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccCc
Confidence 7999999999999999999999 9 99999987653
No 488
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.54 E-value=0.67 Score=44.51 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.1
Q ss_pred hHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 30 ~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++++.+..... ..++|+|||+|..|.-+|..|++. | .+|+++.+.+.
T Consensus 129 ~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~L~~~-g-----~~Vtlv~~~~~ 175 (377)
T PRK04965 129 QEYRAAETQLR-DAQRVLVVGGGLIGTELAMDLCRA-G-----KAVTLVDNAAS 175 (377)
T ss_pred HHHHHHHHHhh-cCCeEEEECCCHHHHHHHHHHHhc-C-----CeEEEEecCCc
Confidence 34444433333 347899999999999999999988 8 89999998764
No 489
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.53 E-value=0.52 Score=47.33 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.++|..|++. | .+|.++++..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 5799999999999999999999 9 8999999874
No 490
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.50 E-value=0.45 Score=43.55 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=31.7
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
||.|+|+ |.+|+.++..|.+. | ++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g-----~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-S-----VPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-C-----CcEEEEeCCCccc
Confidence 5899999 99999999999998 8 8999999998643
No 491
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=89.49 E-value=3.6 Score=40.81 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=37.1
Q ss_pred hhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|-|.--|+.+..+.. ..+|+|+|+|.+|+-++..|+.. |. ..++++|.+.
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~-GI----g~~tIvD~~~ 54 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLP-GI----GSFTIVDGSK 54 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHc-CC----CeEEEECCCc
Confidence 334444555544322 36899999999999999999998 93 5799998764
No 492
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=89.49 E-value=0.72 Score=42.36 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|.|||+|.-|.+.|..+++. | .+|.++++...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 5699999999999999999998 8 89999998764
No 493
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=89.47 E-value=1.5 Score=42.52 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=51.3
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||.. ..+....-|+=+.-+|-++|-.-..-.. ++++|.|.|-.|..+|..+..- | .+|.++..+|-
T Consensus 176 VNDs~t-K~~FDNrYGtgqS~~DgI~RaTn~liaG-K~vVV~GYG~vGrG~A~~~rg~-G-----A~ViVtEvDPI 243 (420)
T COG0499 176 VNDSVT-KSLFDNRYGTGQSLLDGILRATNVLLAG-KNVVVAGYGWVGRGIAMRLRGM-G-----ARVIVTEVDPI 243 (420)
T ss_pred ecchhh-hcccccccccchhHHHHHHhhhceeecC-ceEEEecccccchHHHHHhhcC-C-----CeEEEEecCch
Confidence 677754 2455555666677788888744333323 7899999999999999999887 8 89999999984
No 494
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=89.36 E-value=0.49 Score=45.64 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.|.|||+|.-|++.|..|++. | .+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999998 8 899999987
No 495
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.35 E-value=0.51 Score=48.12 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G-----~~V~v~e~~~ 170 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-G-----HAVTIFEAGP 170 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 47999999999999999999998 8 8899999764
No 496
>PRK07190 hypothetical protein; Provisional
Probab=89.29 E-value=0.58 Score=47.00 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||||..|.++|..|++. | .+|.++++.++.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCcc
Confidence 5799999999999999999998 8 899999998753
No 497
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.26 E-value=0.53 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|++|.|||+|..|...|..+++. | ++|.+++++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 57899999999999999999998 8 8999999764
No 498
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.18 E-value=0.68 Score=41.27 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.+++..|++. | .+|.+.+|+++.+++
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~-G-----~~v~~~~r~~~~~~~ 46 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFARE-G-----AKVVVADRDAAGGEE 46 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 78999998 89999999999998 8 899999999876543
No 499
>PRK06924 short chain dehydrogenase; Provisional
Probab=89.13 E-value=0.65 Score=41.30 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=30.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|++|.|.|+ |.+|.+++..|++. | ++|++.+|++
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~-g-----~~V~~~~r~~ 35 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEK-G-----THVISISRTE 35 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhc-C-----CEEEEEeCCc
Confidence 467999996 99999999999998 8 8999999986
No 500
>PRK05875 short chain dehydrogenase; Provisional
Probab=89.13 E-value=0.69 Score=41.90 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 45 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAA-G-----AAVMIVGRNPDKLA 45 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence 78999998 89999999999998 8 89999999876554
Done!