BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022051
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 146/265 (55%), Gaps = 20/265 (7%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 31 LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 88
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 89 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVEL----HNPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID S V ++A
Sbjct: 148 N--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNIY--GDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I + T P YVPSHL+ M+FEL KN++RA E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKV 280
+S PPI+I+VA G ED++IK+
Sbjct: 265 -ESSLTLPPIKIMVALGEEDLSIKM 288
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 155/279 (55%), Gaps = 13/279 (4%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ V ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVVAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
EL+KN++RA E ++D+ P + I +A+ D+ I++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRI 313
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 152/280 (54%), Gaps = 23/280 (8%)
Query: 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
+++ R+ + +S++ ++FG + S FL KELP+R+A E+ LP L
Sbjct: 27 KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 84
Query: 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGL 132
+P+V V+ WY+ SF +L + + +S D + +F Q++ ++ RHN+VVP MA G+
Sbjct: 85 LNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGV 143
Query: 133 QQLKKEM--DPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIG 186
+ K++ DP I I FLDRFY +RI RMLI QH L NP P H IG
Sbjct: 144 IEYKEKFGFDPFIS----TNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKH-IG 198
Query: 187 YIDTKMSPVQVARNASEHARCVCLREYGSAPD-----FNIYG-DPSFTFPYVPSHLHLMV 240
ID + V ++A E A+ +C + Y AP+ FN D YVPSHL M+
Sbjct: 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHML 258
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
FEL KNS+RA E Y D + P ++ +V G ED++IK+
Sbjct: 259 FELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKI 298
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 146/265 (55%), Gaps = 20/265 (7%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS ++ S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 18 LSMKQFLDFGS--SNACEKTSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 75
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 76 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 134
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVEL----HNPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID + +V ++A
Sbjct: 135 N--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCNVSEVVKDA 191
Query: 202 SEHARCVCLREYGSAPDFNIY------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I YVPSHL+ M+FEL KN++RA E +
Sbjct: 192 YDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESH 251
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKV 280
+S + PPI+++VA G ED++IK+
Sbjct: 252 -ESSLILPPIKVMVALGEEDLSIKM 275
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 153/278 (55%), Gaps = 11/278 (3%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIA 62
+K ++ +++S I+ V ++ T + Y G +LL S ++L +ELP+RIA
Sbjct: 17 SKTVTSFYNQSAIDVVAEKPSVRLTPTMMLYS---GRSQDGSHLLKSGRYLQQELPVRIA 73
Query: 63 RRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHN 122
R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 74 HRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHK 133
Query: 123 NVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 134 DVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD- 186
Query: 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFE 242
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++ E
Sbjct: 187 -FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPE 245
Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
L+KN++RA E ++D+ P + I +A+ D+ I++
Sbjct: 246 LLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRI 283
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 154/279 (55%), Gaps = 13/279 (4%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ V ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVVAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+G RML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGFRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
EL+KN++RA E ++D+ P + I +A+ D+ I++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRI 313
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 156/281 (55%), Gaps = 21/281 (7%)
Query: 13 SLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLP 72
S+ EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP
Sbjct: 2 SVPREVEHFSRYSPSPLSMKQLLDFGSENACER--TSFAFLRQELPVRLANILKEIDILP 59
Query: 73 YGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMA 129
L +V V+ WY+ S DL F + +S D++ DF + ++ RH+NVVP MA
Sbjct: 60 TQLVNTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMA 118
Query: 130 LGLQQLKK--EMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCI 185
G+ + K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P I
Sbjct: 119 QGIIEYKDACTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHI 174
Query: 186 GYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI------YGDPSFTFPYVPSHLHLM 239
G ID V V ++A E +R +C + Y S+P+ + + D YVPSHLH M
Sbjct: 175 GSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHM 234
Query: 240 VFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
+FEL KN++RA E + ++ PI +IV G ED+TIK+
Sbjct: 235 LFELFKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKI 274
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 154/277 (55%), Gaps = 21/277 (7%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP L
Sbjct: 6 EVEHFSRYSPSPLSMKQLLDFGSENACER--TSFAFLRQELPVRLANILKEIDILPTQLV 63
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
+V V+ WY+ S DL F + +S D++ DF + ++ RH+NVVP MA G+
Sbjct: 64 NTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 122
Query: 134 QLKK--EMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYID 189
+ K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P IG ID
Sbjct: 123 EYKDACTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSID 178
Query: 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNI------YGDPSFTFPYVPSHLHLMVFEL 243
V V ++A E +R +C + Y S+P+ + + D YVPSHLH M+FEL
Sbjct: 179 PNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFEL 238
Query: 244 VKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKV 280
KN++RA E + ++ PI +IV G ED+TIK+
Sbjct: 239 FKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKI 274
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 148/269 (55%), Gaps = 26/269 (9%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP L P+V V+ WY
Sbjct: 28 LSMKQFLDFGS--VNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWY 85
Query: 89 LDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKI 143
+ S ++L F D +S D + DFT + I+ RHN+V+P MA G+ + K+ +DP
Sbjct: 86 IQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVT 144
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL---HNPNPPPH--CIGYIDTKMSPVQVA 198
+ FLDRFYMSRI IRML+ QH L P H IG I+ + ++V
Sbjct: 145 S----QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVI 200
Query: 199 RNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAV 251
++ E+AR +C Y ++P+ + G P YVPSHL+ MVFEL KN++RA
Sbjct: 201 KDGYENARRLCDLYYINSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRAT 259
Query: 252 EERYMDSDKVAPPIRIIVADGLEDVTIKV 280
E + + V PPI++ V G ED+T+K+
Sbjct: 260 MEHHANRG-VYPPIQVHVTLGNEDLTVKM 287
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 147 DLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
DL + + + Y G+ + G++++LH PN PP+
Sbjct: 39 DLGQDKEVDGKLYREAAGLCPVWGKYIQLHQPNRPPY 75
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
+Y DL + + Y G+ + G+H+EL P+ PP+
Sbjct: 37 IYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPY 76
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
+Y DL + + Y G+ + G+H+EL P+ PP+
Sbjct: 32 IYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPY 71
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
+Y DL + + Y G+ + G+H+EL P+ PP+
Sbjct: 37 IYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPY 76
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 213 YGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNS 247
YG P F++ D SFT + SH+ + VF VKN
Sbjct: 247 YGKTPKFSV--DTSFTVLHEQSHVEIKVFIDVKNG 279
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 84 VRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKI 143
VRD+ + RD+R +P+I + S E+ I+ IKV N+ P+ K+ D
Sbjct: 710 VRDFPIPKIRDVRKYPEI-TISKEKKLGD-IEFIKVNKNDKKPLRGAVFSLQKQHPDYPD 767
Query: 144 VYEDLDE 150
+Y +D+
Sbjct: 768 IYGAIDQ 774
>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
Length = 595
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 117 IKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG 170
++V ++V P ++ +K+ + ++ +LDEI F M G+ M IG
Sbjct: 499 VRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIG 552
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,740,567
Number of Sequences: 62578
Number of extensions: 356939
Number of successful extensions: 988
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 31
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)