Query 022051
Match_columns 303
No_of_seqs 111 out of 414
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0787 Dehydrogenase kinase [ 100.0 3.5E-88 7.7E-93 639.9 29.8 274 12-288 36-313 (414)
2 PF10436 BCDHK_Adom3: Mitochon 100.0 1.4E-53 3E-58 371.2 15.2 161 27-190 1-164 (164)
3 PRK11100 sensory histidine kin 97.9 0.0028 6.1E-08 61.5 21.6 127 148-288 287-413 (475)
4 PF02518 HATPase_c: Histidine 97.6 0.00011 2.3E-09 58.4 5.2 50 232-289 2-51 (111)
5 TIGR02966 phoR_proteo phosphat 97.5 0.0081 1.8E-07 55.0 16.8 127 149-288 148-274 (333)
6 TIGR02916 PEP_his_kin putative 97.5 0.0053 1.1E-07 64.2 17.3 83 191-288 542-624 (679)
7 PRK10815 sensor protein PhoQ; 97.3 0.022 4.8E-07 57.4 19.1 87 189-288 335-421 (485)
8 PRK11006 phoR phosphate regulo 97.3 0.029 6.4E-07 54.8 18.8 126 149-288 237-362 (430)
9 PRK11091 aerobic respiration c 97.2 0.02 4.3E-07 60.4 17.4 128 149-288 315-443 (779)
10 TIGR02938 nifL_nitrog nitrogen 97.2 0.03 6.5E-07 54.2 17.3 92 190-288 344-436 (494)
11 TIGR01386 cztS_silS_copS heavy 96.9 0.087 1.9E-06 50.9 18.2 85 191-288 314-398 (457)
12 TIGR02956 TMAO_torS TMAO reduc 96.9 0.034 7.4E-07 59.7 16.9 128 150-289 497-625 (968)
13 PRK10364 sensor protein ZraS; 96.9 0.069 1.5E-06 52.6 17.7 87 191-288 306-393 (457)
14 PRK10549 signal transduction h 96.8 0.45 9.8E-06 46.4 22.7 89 189-288 309-397 (466)
15 TIGR03785 marine_sort_HK prote 96.7 0.12 2.7E-06 54.6 18.7 86 190-287 556-641 (703)
16 PRK11644 sensory histidine kin 96.6 0.095 2.1E-06 53.1 16.6 86 191-288 369-454 (495)
17 PRK11466 hybrid sensory histid 96.6 0.064 1.4E-06 57.4 15.5 127 150-288 477-605 (914)
18 PRK10755 sensor protein BasS/P 96.5 0.63 1.4E-05 44.0 20.7 83 195-288 209-292 (356)
19 PRK11360 sensory histidine kin 96.4 0.26 5.6E-06 48.8 17.9 122 150-288 423-546 (607)
20 PRK09303 adaptive-response sen 96.4 0.41 8.9E-06 46.4 18.7 125 151-288 192-318 (380)
21 cd00075 HATPase_c Histidine ki 96.3 0.0081 1.8E-07 44.6 5.0 45 236-287 1-45 (103)
22 PRK13837 two-component VirA-li 96.2 0.18 3.9E-06 54.1 16.3 121 150-288 484-620 (828)
23 PRK15347 two component system 96.2 0.14 3E-06 54.7 15.4 124 150-287 431-556 (921)
24 PRK13557 histidine kinase; Pro 96.1 0.32 7E-06 48.0 16.5 121 149-287 200-336 (540)
25 PRK10490 sensor protein KdpD; 96.0 0.32 6.9E-06 53.0 17.0 86 190-288 737-823 (895)
26 PRK10337 sensor protein QseC; 95.9 0.67 1.4E-05 45.1 17.8 122 150-288 271-393 (449)
27 PRK09470 cpxA two-component se 95.9 0.061 1.3E-06 52.2 10.3 85 191-288 311-396 (461)
28 PRK09835 sensor kinase CusS; P 95.9 1.1 2.5E-05 43.7 19.2 86 191-288 335-420 (482)
29 PRK11107 hybrid sensory histid 95.8 0.34 7.4E-06 51.7 16.3 127 150-288 326-457 (919)
30 PRK10604 sensor protein RstB; 95.8 0.051 1.1E-06 53.5 9.4 84 190-288 278-362 (433)
31 PRK10600 nitrate/nitrite senso 95.7 0.049 1.1E-06 55.6 9.2 84 192-288 430-513 (569)
32 COG0642 BaeS Signal transducti 95.5 0.086 1.9E-06 47.2 9.1 87 189-289 185-273 (336)
33 PRK09467 envZ osmolarity senso 95.4 0.1 2.2E-06 50.5 9.8 81 191-288 293-374 (435)
34 PRK10841 hybrid sensory kinase 95.4 0.35 7.5E-06 52.9 14.6 126 149-288 479-606 (924)
35 PRK10618 phosphotransfer inter 95.4 0.54 1.2E-05 51.3 15.9 125 150-288 483-612 (894)
36 smart00387 HATPase_c Histidine 95.3 0.026 5.7E-07 42.5 4.2 48 233-288 3-50 (111)
37 PF13589 HATPase_c_3: Histidin 95.2 0.037 8E-07 46.4 5.1 42 237-288 4-46 (137)
38 PRK04069 serine-protein kinase 95.0 0.072 1.5E-06 45.9 6.5 49 234-287 41-89 (161)
39 PRK11073 glnL nitrogen regulat 94.9 2.5 5.5E-05 39.5 17.3 120 150-288 163-293 (348)
40 COG4585 Signal transduction hi 94.8 0.11 2.4E-06 50.0 8.1 50 232-290 276-325 (365)
41 PRK13560 hypothetical protein; 94.8 0.14 3E-06 53.3 9.3 91 191-287 668-759 (807)
42 PRK09959 hybrid sensory histid 94.7 0.95 2.1E-05 50.2 16.0 87 189-287 783-876 (1197)
43 TIGR01925 spIIAB anti-sigma F 94.7 0.1 2.2E-06 43.0 6.4 49 235-288 39-87 (137)
44 COG4191 Signal transduction hi 94.6 0.19 4.1E-06 52.0 9.3 91 189-288 453-544 (603)
45 PRK15053 dpiB sensor histidine 94.4 0.078 1.7E-06 53.2 6.0 53 232-288 429-481 (545)
46 PRK13559 hypothetical protein; 94.4 0.2 4.3E-06 47.4 8.5 93 191-296 230-329 (361)
47 PRK04184 DNA topoisomerase VI 94.3 0.077 1.7E-06 54.6 5.9 52 233-289 34-88 (535)
48 TIGR01924 rsbW_low_gc serine-p 94.2 0.13 2.9E-06 44.2 6.3 48 235-287 42-89 (159)
49 COG3290 CitA Signal transducti 94.1 0.92 2E-05 46.6 13.0 51 233-288 425-475 (537)
50 PRK11086 sensory histidine kin 94.1 0.14 2.9E-06 51.0 7.0 49 234-288 432-480 (542)
51 TIGR01052 top6b DNA topoisomer 94.0 0.1 2.2E-06 53.1 5.8 51 234-289 27-78 (488)
52 PF13581 HATPase_c_2: Histidin 93.8 0.22 4.7E-06 40.2 6.6 48 235-287 31-78 (125)
53 PRK14083 HSP90 family protein; 93.8 0.13 2.7E-06 53.8 6.3 51 237-288 25-75 (601)
54 PRK14868 DNA topoisomerase VI 93.7 0.13 2.9E-06 54.8 6.2 56 228-288 39-94 (795)
55 COG1389 DNA topoisomerase VI, 93.1 0.16 3.5E-06 51.1 5.5 63 234-301 35-102 (538)
56 PRK10935 nitrate/nitrite senso 93.0 0.42 9.2E-06 48.0 8.4 82 191-287 431-515 (565)
57 PRK14867 DNA topoisomerase VI 92.6 0.2 4.4E-06 52.7 5.7 48 236-288 37-85 (659)
58 PRK03660 anti-sigma F factor; 92.5 0.41 9E-06 39.6 6.4 50 234-288 38-87 (146)
59 TIGR00585 mutl DNA mismatch re 89.9 0.63 1.4E-05 44.3 5.6 45 234-289 21-65 (312)
60 PRK05559 DNA topoisomerase IV 88.9 0.26 5.6E-06 51.8 2.3 47 234-289 36-82 (631)
61 COG5000 NtrY Signal transducti 88.7 32 0.00069 36.4 17.1 167 108-288 484-652 (712)
62 COG3850 NarQ Signal transducti 88.4 0.63 1.4E-05 47.8 4.6 44 235-287 481-524 (574)
63 smart00433 TOP2c Topoisomerase 87.5 0.15 3.2E-06 53.2 -0.5 45 236-289 2-46 (594)
64 PRK10547 chemotaxis protein Ch 87.3 3.7 8.1E-05 43.6 9.8 91 194-289 345-443 (670)
65 COG2172 RsbW Anti-sigma regula 86.7 2.3 5.1E-05 36.3 6.6 50 236-289 41-90 (146)
66 PRK05218 heat shock protein 90 85.4 1.3 2.9E-05 46.4 5.3 52 237-288 28-85 (613)
67 PRK14939 gyrB DNA gyrase subun 84.7 0.51 1.1E-05 50.6 1.8 47 234-289 36-82 (756)
68 PRK05644 gyrB DNA gyrase subun 84.4 0.53 1.1E-05 49.6 1.8 47 234-289 36-82 (638)
69 COG2205 KdpD Osmosensitive K+ 83.4 45 0.00097 36.5 15.4 83 193-288 737-820 (890)
70 TIGR01059 gyrB DNA gyrase, B s 82.5 0.77 1.7E-05 48.5 2.1 46 235-289 30-75 (654)
71 COG5002 VicK Signal transducti 81.8 2.7 5.9E-05 41.5 5.3 48 233-288 340-387 (459)
72 COG3920 Signal transduction hi 80.0 47 0.001 30.2 15.2 119 151-289 52-173 (221)
73 TIGR01058 parE_Gpos DNA topois 79.6 1.3 2.8E-05 46.7 2.5 47 234-289 33-79 (637)
74 PRK00095 mutL DNA mismatch rep 78.8 2.6 5.7E-05 44.1 4.5 43 236-289 23-65 (617)
75 PTZ00272 heat shock protein 83 77.5 4.9 0.00011 42.9 6.0 50 239-288 29-84 (701)
76 PTZ00130 heat shock protein 90 75.2 3.6 7.8E-05 44.5 4.3 50 239-288 92-147 (814)
77 PF14501 HATPase_c_5: GHKL dom 73.6 9.1 0.0002 29.8 5.4 44 235-283 5-48 (100)
78 COG3275 LytS Putative regulato 72.4 7.7 0.00017 39.7 5.7 70 211-287 435-504 (557)
79 COG4251 Bacteriophytochrome (l 71.7 65 0.0014 34.4 12.2 62 230-298 631-696 (750)
80 COG0326 HtpG Molecular chapero 70.9 7.3 0.00016 41.0 5.3 51 238-288 30-86 (623)
81 PHA02569 39 DNA topoisomerase 70.2 2.4 5.2E-05 44.4 1.6 55 227-289 38-92 (602)
82 PLN03128 DNA topoisomerase 2; 68.1 5.3 0.00011 44.9 3.8 55 227-289 45-99 (1135)
83 PTZ00108 DNA topoisomerase 2-l 64.2 7.4 0.00016 44.6 4.0 55 228-289 51-107 (1388)
84 COG0187 GyrB Type IIA topoisom 63.5 1.9 4.2E-05 45.1 -0.6 46 234-288 35-80 (635)
85 PTZ00109 DNA gyrase subunit b; 62.3 1.1 2.4E-05 48.8 -2.7 47 234-289 128-174 (903)
86 PF10215 Ost4: Oligosaccaryltr 61.6 3.1 6.8E-05 27.3 0.3 21 280-300 2-22 (35)
87 COG3851 UhpB Signal transducti 61.1 18 0.00039 36.1 5.6 46 235-289 410-455 (497)
88 PLN03237 DNA topoisomerase 2; 60.5 8.8 0.00019 44.1 3.8 55 227-289 70-124 (1465)
89 COG4564 Signal transduction hi 58.9 40 0.00086 33.3 7.4 57 223-288 347-403 (459)
90 COG2972 Predicted signal trans 53.7 41 0.00088 33.7 6.9 73 209-288 327-399 (456)
91 COG4192 Signal transduction hi 53.2 28 0.0006 35.8 5.5 82 192-288 525-611 (673)
92 TIGR01055 parE_Gneg DNA topois 53.1 6.4 0.00014 41.5 1.1 44 237-289 32-75 (625)
93 COG5119 Uncharacterized protei 50.1 21 0.00045 29.0 3.3 22 246-268 32-65 (119)
94 KOG2904 Predicted methyltransf 42.7 72 0.0016 30.8 6.2 86 188-295 78-167 (328)
95 COG3852 NtrB Signal transducti 40.1 79 0.0017 31.0 6.1 92 191-288 200-300 (363)
96 COG0643 CheA Chemotaxis protei 38.3 71 0.0015 34.4 6.2 91 193-287 391-488 (716)
97 PF07865 DUF1652: Protein of u 35.8 80 0.0017 23.8 4.4 35 248-288 4-39 (69)
98 PF14497 GST_C_3: Glutathione 34.4 2E+02 0.0044 21.7 6.8 63 49-114 32-97 (99)
99 COG1298 FlhA Flagellar biosynt 33.8 5E+02 0.011 28.0 11.2 65 147-222 532-599 (696)
100 KOG0615 Serine/threonine prote 31.3 91 0.002 31.7 5.2 45 242-286 280-326 (475)
101 KOG1027 Serine/threonine prote 31.3 2.6E+02 0.0057 30.8 8.9 90 189-285 533-657 (903)
102 COG0323 MutL DNA mismatch repa 30.2 48 0.001 35.1 3.3 39 239-288 27-65 (638)
103 KOG0638 4-hydroxyphenylpyruvat 29.3 59 0.0013 31.8 3.4 126 74-253 182-311 (381)
104 PF05186 Dpy-30: Dpy-30 motif; 28.5 1.5E+02 0.0033 20.0 4.4 23 116-140 4-26 (42)
105 KOG2573 Ribosome biogenesis pr 24.3 1.3E+02 0.0027 30.5 4.7 36 81-121 187-222 (498)
106 PF12091 DUF3567: Protein of u 23.8 1E+02 0.0022 24.2 3.3 13 147-159 63-75 (85)
107 KOG0355 DNA topoisomerase type 23.8 79 0.0017 34.5 3.5 51 230-289 49-99 (842)
108 COG3445 Acid-induced glycyl ra 20.9 1.6E+02 0.0035 24.0 3.9 41 215-270 61-101 (127)
109 KOG0658 Glycogen synthase kina 20.6 97 0.0021 30.7 3.1 34 250-285 139-172 (364)
110 COG5381 Uncharacterized protei 20.2 2.1E+02 0.0046 25.1 4.8 45 230-283 58-102 (184)
No 1
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-88 Score=639.92 Aligned_cols=274 Identities=39% Similarity=0.628 Sum_probs=260.2
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHH
Q 022051 12 KSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDS 91 (303)
Q Consensus 12 ~~l~~~I~~ya~~~~~plSL~~Ll~fG~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~S 91 (303)
+.+.++|+.||+++|+|+|++||++||.+++.....+|+.||++|||||||||+++|+.||+++++||||++|++||++|
T Consensus 36 ~~~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~s 115 (414)
T KOG0787|consen 36 PSLPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRS 115 (414)
T ss_pred cchHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHH
Confidence 46899999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCC-chhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHh
Q 022051 92 FRDLRSFPDIRS-TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG 170 (303)
Q Consensus 92 f~~l~~~p~i~~-~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~ 170 (303)
|++|++||.+.+ +++..+|++.+..+++||++|+++||+|++|+|+..+ + ....+.||+||||||+||||||||++
T Consensus 116 fe~ll~~~~~~~~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~-d--p~~~~~iqyFLdr~y~sRIsiRMLv~ 192 (414)
T KOG0787|consen 116 FEDLLEFPTISPDLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDG-D--PVTEKNIQYFLDRFYMSRISIRMLVN 192 (414)
T ss_pred HHHHHccCCCCcchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999877 9999999999999999999999999999999999876 2 11256899999999999999999999
Q ss_pred hhhhhcC-C-CCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceee-ecCchHHHHHHHHHHHH
Q 022051 171 QHVELHN-P-NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP-YVPSHLHLMVFELVKNS 247 (303)
Q Consensus 171 qHlaL~~-~-~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~-yVPsHL~yIl~ELlKNA 247 (303)
||++|++ + ..+++|||+||++|++.++|++|+|+|+++|+++|+.+|+++|+|+++.+|. |||+||+||||||||||
T Consensus 193 qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNa 272 (414)
T KOG0787|consen 193 QHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNA 272 (414)
T ss_pred hhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHH
Confidence 9999998 3 2346799999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 248 LRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 248 mRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
||||||+|++++.++|||+|+|++|+||++|||||+|||..
T Consensus 273 mrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~ 313 (414)
T KOG0787|consen 273 MRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVP 313 (414)
T ss_pred HHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcC
Confidence 99999999999877999999999999999999999999975
No 2
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=100.00 E-value=1.4e-53 Score=371.17 Aligned_cols=161 Identities=48% Similarity=0.858 Sum_probs=147.9
Q ss_pred CCCCHHHHHhcCCCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHHHHhhcCCCCCCchh
Q 022051 27 TGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSD 106 (303)
Q Consensus 27 ~plSL~~Ll~fG~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf~~l~~~p~i~~~~~ 106 (303)
||+||+||++||++++++++++||+|+++||||||||||++|++|||+++.||+|++|++||++||++|++||+|++.++
T Consensus 1 tplSL~~L~~fg~~~~~~~l~~sa~fl~~ELpvRlA~ri~~l~~LP~~l~~~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~ 80 (164)
T PF10436_consen 1 TPLSLKQLLQFGRNPTEETLLQSAQFLRRELPVRLAHRIRELQNLPYILVSNPSIQQVYEWYLQSFEELRSFPPPKTLED 80 (164)
T ss_dssp --EBHHHHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHTTSTTTSCCH
T ss_pred CCcCHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhCChhhccChhHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHhhhhhhcCCC--C-CCC
Q 022051 107 ERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPN--P-PPH 183 (303)
Q Consensus 107 ~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~--~-~~~ 183 (303)
+.+|+++|+++++||++|+++||+|++|+++.+.. ..+.++|++|||+||+||||+|||++||++|+++. + +++
T Consensus 81 ~~~F~~~l~~i~~~H~~vv~~lA~G~~E~~~~~~~---~~~~~~i~~fLd~f~~sRIgiR~L~~qHlaL~~~~~~~~~~~ 157 (164)
T PF10436_consen 81 NEKFTELLERILDRHSDVVPTLAQGVLELKKYLQS---SESEEQIQSFLDRFYRSRIGIRMLAEQHLALSEQSLNPSKPN 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSTT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCccCCCCCC
Confidence 99999999999999999999999999999998721 11246999999999999999999999999997652 2 389
Q ss_pred cceEecC
Q 022051 184 CIGYIDT 190 (303)
Q Consensus 184 ~iGiI~~ 190 (303)
|||+|||
T Consensus 158 ~vG~I~t 164 (164)
T PF10436_consen 158 YVGIIDT 164 (164)
T ss_dssp SBTTBEE
T ss_pred eeeeecC
Confidence 9999986
No 3
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.91 E-value=0.0028 Score=61.54 Aligned_cols=127 Identities=12% Similarity=0.016 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc
Q 022051 148 LDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF 227 (303)
Q Consensus 148 ~~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~ 227 (303)
.+....+++.....---+.-++++...+..... +..-.....+++.++++++.......+.. ...++.+..+ +.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~-~~ 360 (475)
T PRK11100 287 PEDRARFTGNILTQSARLQQLIDRLLELARLEQ--RQELEVLEPVALAALLEELVEAREAQAAA---KGITLRLRPD-DA 360 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCccceeccHHHHHHHHHHHHHHHHHh---CCceEEEeCC-Cc
Confidence 346778888877766667777777776654321 11111236779999999988887766544 2344555544 55
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.+..-+..|..++.+|+.||++++ .. -..|.|++...++.+.|.|+|.|.|..
T Consensus 361 ~~~~~~~~l~~vl~nli~Na~~~~-----~~---~~~i~i~~~~~~~~~~i~i~D~G~Gi~ 413 (475)
T PRK11100 361 RVLGDPFLLRQALGNLLDNAIDFS-----PE---GGTITLSAEVDGEQVALSVEDQGPGIP 413 (475)
T ss_pred eEEECHHHHHHHHHHHHHHHHHhC-----CC---CCEEEEEEEEcCCEEEEEEEECCCCCC
Confidence 666666678999999999999874 11 235899999888999999999999964
No 4
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=97.60 E-value=0.00011 Score=58.39 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=44.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 232 VPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.|..|++++.||+.||++++-+. ..|.|.+...++.+.|.|+|+|.|..-
T Consensus 2 d~~~l~~il~~ll~Na~~~~~~~--------~~I~i~~~~~~~~~~i~i~d~G~gi~~ 51 (111)
T PF02518_consen 2 DPDRLRQILSELLDNAIKHSPEG--------GKIDITIEEDDDHLSIEISDNGVGIPP 51 (111)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHT--------SEEEEEEEEETTEEEEEEEESSSSTTH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCC--------CEEEEEEEEecCeEEEEEEeccccccc
Confidence 46789999999999999998875 469999999999999999999998654
No 5
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.49 E-value=0.0081 Score=54.98 Aligned_cols=127 Identities=10% Similarity=0.022 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCce
Q 022051 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT 228 (303)
Q Consensus 149 ~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~ 228 (303)
+..+.+++.+...--.++-++++...+.... .+....-...+++.++++.+.......... .|. .+.+..+.+..
T Consensus 148 ~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~~i--~i~~~~~~~~~ 222 (333)
T TIGR02966 148 EEWNRALEIMLEQSQRMQSLVEDLLTLSRLE--SAASPLEDEPVDMPALLDHLRDEAEALSQG-KNH--QITFEIDGGVD 222 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccccccccCHHHHHHHHHHHHHHHHHH-cCc--EEEEcCCCCce
Confidence 3455666665544334455566655554321 112333445778999999998888766554 233 34444445566
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
...-|.+|..++.+|+.||++++ .. -..|.|.+...+.++.|.|+|+|.|..
T Consensus 223 ~~~d~~~l~~vl~nll~Nai~~~-----~~---~~~i~i~~~~~~~~~~i~i~d~G~gi~ 274 (333)
T TIGR02966 223 VLGDEDELRSAFSNLVSNAIKYT-----PE---GGTITVRWRRDGGGAEFSVTDTGIGIA 274 (333)
T ss_pred EEECHHHHHHHHHHHHHHhheeC-----CC---CCeEEEEEEEcCCEEEEEEEecCCCCC
Confidence 66778899999999999998873 11 135888888888889999999999864
No 6
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.48 E-value=0.0053 Score=64.18 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+++.++++++.+..+. ..+.++++.+.+..+..-|..++.++.+|+.||++++- . -.+|.|.+.
T Consensus 542 ~~~l~~ll~~~~~~~~~-------~~~~~~l~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~-----~---~~~I~I~~~ 606 (679)
T TIGR02916 542 CVDLVDLLRRAIASKRA-------QGPRPEVSIDTDLSVRADRERLERVLGHLVQNALEATP-----G---EGRVAIRVE 606 (679)
T ss_pred cccHHHHHHHHHHHhhh-------hcCCceEEeCCCceEEECHHHHHHHHHHHHHHHHHhCC-----C---CCcEEEEEE
Confidence 45777888777665432 23444444455677777788999999999999998752 1 135889988
Q ss_pred cCCCeEEEEEeecCcchh
Q 022051 271 DGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 271 ~g~edvtIkISD~g~~~~ 288 (303)
..++.+.|+|+|+|.|..
T Consensus 607 ~~~~~~~i~V~D~G~Gi~ 624 (679)
T TIGR02916 607 RECGAARIEIEDSGCGMS 624 (679)
T ss_pred EcCCEEEEEEEEcCCCcC
Confidence 878899999999999864
No 7
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.33 E-value=0.022 Score=57.38 Aligned_cols=87 Identities=15% Similarity=0.007 Sum_probs=67.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 189 ~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
....++.++++++.+..+..+..+ ..++.++.+.+..+..-+..|..++..|++||++++-+ .|+|.
T Consensus 335 ~~~~~l~~ll~~~~~~l~~~~~~~---~i~i~~~~~~~~~v~~d~~~l~~vl~NLi~NAik~~~~----------~i~I~ 401 (485)
T PRK10815 335 RELHSVAPLLDNLTSALNKVYQRK---GVNITLDISPEITFVGEKNDFMEVMGNVLDNACKYCLE----------FVEIS 401 (485)
T ss_pred cceecHHHHHHHHHHHHHHHHHHC---CcEEEEecCCCcEEEeCHHHHHHHHHHHHHHHHHhcCC----------cEEEE
Confidence 345688889998888887766543 23455555566777777888999999999999998621 48888
Q ss_pred EecCCCeEEEEEeecCcchh
Q 022051 269 VADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~~ 288 (303)
+..+++.+.|.|+|.|.|..
T Consensus 402 ~~~~~~~v~I~V~D~G~GI~ 421 (485)
T PRK10815 402 ARQTDEHLHIVVEDDGPGIP 421 (485)
T ss_pred EEEeCCEEEEEEEECCCCcC
Confidence 88888999999999999964
No 8
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.27 E-value=0.029 Score=54.84 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCce
Q 022051 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT 228 (303)
Q Consensus 149 ~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~ 228 (303)
+..+..++....+=-.+.-++++.+.+......+ .-.....+++..+++.....+..+. .....+.+..+.+..
T Consensus 237 ~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~i~~~~~~~~~ 310 (430)
T PRK11006 237 ALREKALHTMREQTQRMEGLVKQLLTLSKIEAAP--TIDLNEKVDVPMMLRVLEREAQTLS----QGKHTITFEVDNSLK 310 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcccCCccCHHHHHHHHHHHHHHHh----cCCcEEEEecCCCce
Confidence 3455566655433333444667766665432111 1122345566677766555554432 344566666666666
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+..=|..|..++..|+.||++|+- . -..|.|.+...++.+.|.|+|.|.|..
T Consensus 311 i~~d~~~l~~vl~NLl~NAik~~~-----~---~~~I~i~~~~~~~~~~i~V~D~G~Gi~ 362 (430)
T PRK11006 311 VFGNEDQLRSAISNLVYNAVNHTP-----E---GTHITVRWQRVPQGAEFSVEDNGPGIA 362 (430)
T ss_pred EEECHHHHHHHHHHHHHHHHhcCC-----C---CCeEEEEEEEcCCEEEEEEEEcCCCCC
Confidence 677788999999999999999852 1 135888887888889999999999963
No 9
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.16 E-value=0.02 Score=60.44 Aligned_cols=128 Identities=9% Similarity=0.067 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCce
Q 022051 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT 228 (303)
Q Consensus 149 ~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~ 228 (303)
++...+++....+=-.+.-+++.-+.+.... .+....-...+++.++++++.+..+..+..+ |....+.+.++.+..
T Consensus 315 ~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~ 391 (779)
T PRK11091 315 AEQRKYLKTIHVSAITLGNIFNDIIDMDKME--RRKLQLDNQPIDFTDFLADLENLSGLQAEQK-GLRFDLEPLLPLPHK 391 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh--CCCcEEEeeccCHHHHHHHHHHHHHHHHHhc-CCEEEEEeCCCCCce
Confidence 3556677776655444444566666554332 2334444567899999999988887766543 433333333444445
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-CCeEEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-~edvtIkISD~g~~~~ 288 (303)
+..-|..|.+++..|+.||+++| .. ..|.|.+... ++.+.|.|+|.|.|..
T Consensus 392 v~~d~~~l~qvl~NLl~NAik~~-----~~----g~v~i~~~~~~~~~~~i~V~D~G~Gi~ 443 (779)
T PRK11091 392 VITDGTRLRQILWNLISNAVKFT-----QQ----GGVTVRVRYEEGDMLTFEVEDSGIGIP 443 (779)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhC-----CC----CcEEEEEEEccCCEEEEEEEecCCCCC
Confidence 66678999999999999999986 11 1377777765 6779999999999864
No 10
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.15 E-value=0.03 Score=54.20 Aligned_cols=92 Identities=12% Similarity=-0.014 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc-eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 190 ~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~-~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
..+++.++++++++.....-. .....+.+....+. .+..-|.-|+.++.+|++||.+++-+.. ...+.|.|.
T Consensus 344 ~~~dl~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~----~~~~~i~i~ 416 (494)
T TIGR02938 344 VPVNLNQILRDVITLSTPRLL---AAGIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKG----WKRRELSIT 416 (494)
T ss_pred ccccHHHHHHHHHHHhHHHHH---hCCCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccC----CCcceEEEE
Confidence 467888998887765442111 13344555443332 3445688899999999999999976532 123457888
Q ss_pred EecCCCeEEEEEeecCcchh
Q 022051 269 VADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~~ 288 (303)
+...++.+.|.|+|+|.|..
T Consensus 417 ~~~~~~~~~~~V~D~G~Gi~ 436 (494)
T TIGR02938 417 TALNGDLIVVSILDSGPGIP 436 (494)
T ss_pred EEecCCEEEEEEEeCCCCCC
Confidence 78888999999999999853
No 11
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.93 E-value=0.087 Score=50.95 Aligned_cols=85 Identities=13% Similarity=0.045 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+++.+.++++.+.-..++.. .| +++.-+.+..+.--+..|+.++.+++.||.|++- . -..|.|.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~----i~~~~~~~~~~~~~~~~l~~~~~nll~Nai~~~~-----~---~~~I~i~~~ 380 (457)
T TIGR01386 314 RLDLAAELAKVAEYFEPLAEE-RG----VRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTP-----D---GGTITVRIE 380 (457)
T ss_pred ccCHHHHHHHHHHHHHHHHHh-CC----eEEEecCCceEEECHHHHHHHHHHHHHHHHHcCC-----C---CceEEEEEE
Confidence 468888888777776554433 22 3333233355666677789999999999998732 1 135889888
Q ss_pred cCCCeEEEEEeecCcchh
Q 022051 271 DGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 271 ~g~edvtIkISD~g~~~~ 288 (303)
..++.+.|.|.|.|.|..
T Consensus 381 ~~~~~~~i~v~D~G~g~~ 398 (457)
T TIGR01386 381 RRSDEVRVSVSNPGPGIP 398 (457)
T ss_pred ecCCEEEEEEEeCCCCCC
Confidence 888999999999999853
No 12
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.93 E-value=0.034 Score=59.73 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCcee
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTF 229 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f 229 (303)
+.+.+++....+==.+.-++++=+.+..-. .+....-...+++.++++++.+..+..+..+ |....+.+.++.+..+
T Consensus 497 ~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e--~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 573 (968)
T TIGR02956 497 QQQQYLQVINRSGESLLDILNDILDYSKIE--AGHLSISPRPFDLNALLDDVHHLMVSRAQLK-GIQLRLNIPEQLPNWW 573 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCeeeecccCHHHHHHHHHHHHHHHHHHc-CcEEEEEeCCCCCceE
Confidence 455566665544333344455554443321 1223334467899999999999888776544 4433444444455566
Q ss_pred eecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCe-EEEEEeecCcchhh
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLED-VTIKVLLLFMICLC 289 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~ed-vtIkISD~g~~~~~ 289 (303)
..=|.+|..|+..|+.||+++| .. ..|.|.+...++. +.|.|+|.|.|...
T Consensus 574 ~~d~~~l~~il~nLi~NAik~~-----~~----g~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 625 (968)
T TIGR02956 574 QGDGPRIRQVLINLVGNAIKFT-----DR----GSVVLRVSLNDDSSLLFEVEDTGCGIAE 625 (968)
T ss_pred eeCHHHHHHHHHHHHHHHHhhC-----CC----CeEEEEEEEcCCCeEEEEEEeCCCCCCH
Confidence 6678999999999999999985 11 2488888877766 99999999999743
No 13
>PRK10364 sensor protein ZraS; Provisional
Probab=96.91 E-value=0.069 Score=52.59 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc-eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~-~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++.+.+.....+... ..+++++.+.+. ....-|..|..++..|+.||++|+-+ -..|.|.+
T Consensus 306 ~~~l~~~l~~~~~~~~~~~~~~---~i~l~~~~~~~~~~~~~d~~~l~~il~NLl~NA~k~~~~--------~~~I~i~~ 374 (457)
T PRK10364 306 AVDLNDLINHSLQLVSQDANSR---EIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQ--------HGVISVTA 374 (457)
T ss_pred EecHHHHHHHHHHHHHHHHHhc---CeEEEEEcCCCCceEEECHHHHHHHHHHHHHHHHHhcCC--------CCeEEEEE
Confidence 3577888888877776655442 234555544432 33445678999999999999998621 23589999
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++++.|.|.|.|.|..
T Consensus 375 ~~~~~~~~i~V~D~G~Gi~ 393 (457)
T PRK10364 375 SESGAGVKISVTDSGKGIA 393 (457)
T ss_pred EEeCCeEEEEEEECCCCCC
Confidence 9888899999999999863
No 14
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.85 E-value=0.45 Score=46.43 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=67.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 189 ~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
...+++.++++.+.+..+.... ....++.++.+.+.....-|..+.+++.+|+.||++++- . -..|.|.
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~d~~~l~qvl~nll~NAi~~~~-----~---~~~I~i~ 377 (466)
T PRK10549 309 KTPVDLVPLLEVAGGAFRERFA---SRGLTLQLSLPDSATVFGDPDRLMQLFNNLLENSLRYTD-----S---GGSLHIS 377 (466)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH---HCCcEEEEecCCCcEEEeCHHHHHHHHHHHHHHHHHhCC-----C---CCEEEEE
Confidence 4567888888877776554322 233566676766777777899999999999999999842 1 2468999
Q ss_pred EecCCCeEEEEEeecCcchh
Q 022051 269 VADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~~ 288 (303)
+...++.+.|.|+|.|-|..
T Consensus 378 ~~~~~~~~~i~V~D~G~Gi~ 397 (466)
T PRK10549 378 AEQRDKTLRLTFADSAPGVS 397 (466)
T ss_pred EEEcCCEEEEEEEecCCCcC
Confidence 98889999999999998874
No 15
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.72 E-value=0.12 Score=54.62 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 190 ~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
..+++.++++.+.+..+..+.. ..-.+++.. .+..+..-|..|..++..|++||++++- . -.+|.|.+
T Consensus 556 ~~~dl~~ll~~~i~~~~~~~~~---~~i~l~i~~-~~~~i~~d~~~L~~il~NLI~NAik~s~-----~---~~~I~I~~ 623 (703)
T TIGR03785 556 EDFDLSEVLSGCMQGYQMTYPP---QRFELNIPE-TPLVMRGSPELIAQMLDKLVDNAREFSP-----E---DGLIEVGL 623 (703)
T ss_pred eeecHHHHHHHHHHHHHHHhhc---CCEEEEecC-CCeEEEECHHHHHHHHHHHHHHHHHHCC-----C---CCeEEEEE
Confidence 4678999999888876655432 222333332 3446666788899999999999999852 1 12499998
Q ss_pred ecCCCeEEEEEeecCcch
Q 022051 270 ADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~ 287 (303)
...++.+.|.|+|.|.|.
T Consensus 624 ~~~~~~v~I~V~D~G~GI 641 (703)
T TIGR03785 624 SQNKSHALLTVSNEGPPL 641 (703)
T ss_pred EEcCCEEEEEEEEcCCCC
Confidence 888899999999999985
No 16
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=96.64 E-value=0.095 Score=53.09 Aligned_cols=86 Identities=12% Similarity=-0.028 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+++.+.+++..+.... ...|...+++.+++.+....-.+..++.++.|++.||++++ +. ..|.|++.
T Consensus 369 ~~~L~~~l~~l~~~l~~---~~~~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha-----~~----~~I~I~l~ 436 (495)
T PRK11644 369 DLTLEQAIRSLMREMEL---EDRGIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHA-----DA----SAVTLQGW 436 (495)
T ss_pred cCCHHHHHHHHHHHHHH---hhcCceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhC-----CC----CEEEEEEE
Confidence 46777777777665532 22333334444444333223345568999999999999853 22 24888888
Q ss_pred cCCCeEEEEEeecCcchh
Q 022051 271 DGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 271 ~g~edvtIkISD~g~~~~ 288 (303)
..++.+.|.|+|+|.|..
T Consensus 437 ~~~~~i~l~V~DnG~Gi~ 454 (495)
T PRK11644 437 QQDERLMLVIEDDGSGLP 454 (495)
T ss_pred EcCCEEEEEEEECCCCCC
Confidence 878889999999999863
No 17
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.55 E-value=0.064 Score=57.41 Aligned_cols=127 Identities=11% Similarity=0.002 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec--CCCc
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG--DPSF 227 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g--~~d~ 227 (303)
+...+++....+=-.+.-++++.+.+..-......+-.-...+++.++++++.+........+ ...+.++. +.+.
T Consensus 477 ~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~ 553 (914)
T PRK11466 477 AQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGR---PIRLATDIADDLPT 553 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhC---CcEEEEEeCCCCCc
Confidence 444555554433333334555555543221111223333456788999998888877655432 23333332 3344
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.+..-|..|..++..|+.||+++| .. ..|.|.+...++.+.|.|+|.|.|..
T Consensus 554 ~v~~d~~~l~qil~NLl~NAik~~-----~~----g~I~i~~~~~~~~~~i~V~D~G~Gi~ 605 (914)
T PRK11466 554 ALMGDPRRIRQVITNLLSNALRFT-----DE----GSIVLRSRTDGEQWLVEVEDSGCGID 605 (914)
T ss_pred eEEECHHHHHHHHHHHHHHHHHhC-----CC----CeEEEEEEEcCCEEEEEEEECCCCCC
Confidence 566678999999999999999985 11 24888888888899999999999864
No 18
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.55 E-value=0.63 Score=44.00 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEe-cCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCC
Q 022051 195 VQVARNASEHARCVCLREYGSAPDFNIY-GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL 273 (303)
Q Consensus 195 ~~vv~~a~~~a~~lC~~~yg~~P~v~i~-g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~ 273 (303)
.+++..+.+..+..+... ...+.+. ...+..+.-=+..+..++..|+.||++++ .. -..|.|.+...+
T Consensus 209 ~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~d~~~l~~il~nLi~NA~k~~-----~~---~~~I~I~~~~~~ 277 (356)
T PRK10755 209 EDVILPSQDELSEMLEQR---QQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYS-----PE---GSTITIKLSQED 277 (356)
T ss_pred HHHHHHHHHHHHHHHHHh---CCeEEeccCCCceEEEECHHHHHHHHHHHHHHHHhhC-----CC---CCcEEEEEEEcC
Confidence 566666555555555443 3344443 23445555556778999999999999874 11 135899988888
Q ss_pred CeEEEEEeecCcchh
Q 022051 274 EDVTIKVLLLFMICL 288 (303)
Q Consensus 274 edvtIkISD~g~~~~ 288 (303)
+.+.|.|.|.|.|..
T Consensus 278 ~~~~i~V~D~G~Gi~ 292 (356)
T PRK10755 278 GGAVLAVEDEGPGID 292 (356)
T ss_pred CEEEEEEEECCCCCC
Confidence 899999999999863
No 19
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.42 E-value=0.26 Score=48.84 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCce-
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT- 228 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~- 228 (303)
....+++.....--.+.-++++.+.+..... .. ...++..++++++....+. ..|....++++..+.+..
T Consensus 423 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 493 (607)
T PRK11360 423 PSQEYLSVVLREVDRLNKVIDQLLEFSRPRE-SQ-----WQPVSLNALVEEVLQLFQT---AGVQARVDFETELDNELPP 493 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-Cc-----cceecHHHHHHHHHHHHHH---hhhccCcEEEEEcCCCCCe
Confidence 4556666655443344456666666654321 11 1356777777777665443 234455667776554443
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCe-EEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLED-VTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~ed-vtIkISD~g~~~~ 288 (303)
+..-+..|+.++.+++.||++++-. -..|.|.+...+.+ +.|.|.|.|.|.-
T Consensus 494 ~~~~~~~l~~~~~nli~na~~~~~~--------~~~i~v~~~~~~~~~~~i~v~D~G~G~~ 546 (607)
T PRK11360 494 IWADPELLKQVLLNILINAVQAISA--------RGKIRIRTWQYSDGQVAVSIEDNGCGID 546 (607)
T ss_pred EEECHHHHHHHHHHHHHHHHHHhcC--------CCeEEEEEEEcCCCEEEEEEEeCCCCCC
Confidence 3344557999999999999987421 12588888766555 9999999999954
No 20
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.39 E-value=0.41 Score=46.42 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc-ee
Q 022051 151 IHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TF 229 (303)
Q Consensus 151 i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~-~f 229 (303)
.+.+++....+-=-+.-|++.-+.+.... ....-.-...+++.++++++.+.....+... ...+.++...+. .+
T Consensus 192 ~~~~~~~~~~~~~~l~~li~~ll~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~---~i~l~~~~~~~~~~v 266 (380)
T PRK09303 192 IEQLQDQARRQLEEIERLITDLLEVGRTR--WEALRFNPQKLDLGSLCQEVILELEKRWLAK---SLEIQTDIPSDLPSV 266 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCceeccccCCHHHHHHHHHHHHHHHHHHc---CCEEEEEcCCCCCeE
Confidence 55555555443323334555555444321 1112223356789999998888877655442 334444433333 34
Q ss_pred eecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec-CCCeEEEEEeecCcchh
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD-GLEDVTIKVLLLFMICL 288 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~-g~edvtIkISD~g~~~~ 288 (303)
..=|..|.+++..|+.||++++-+ + ..|.|.+.. .+..+.|.|.|.|.|..
T Consensus 267 ~~d~~~l~qvl~NLl~NAik~~~~-----~---~~I~i~~~~~~~~~v~i~V~D~G~GI~ 318 (380)
T PRK09303 267 YADQERIRQVLLNLLDNAIKYTPE-----G---GTITLSMLHRTTQKVQVSICDTGPGIP 318 (380)
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCC-----C---ceEEEEEEecCCCEEEEEEEEcCCCCC
Confidence 445677999999999999987421 1 246666654 45679999999999864
No 21
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.30 E-value=0.0081 Score=44.59 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 236 L~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
|.+++.|++.||+++... .-.+|.|.+...+..+.|.|+|.|.|.
T Consensus 1 l~~~~~~ll~Na~~~~~~-------~~~~v~i~~~~~~~~~~v~i~d~g~g~ 45 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE-------GGGRITISVERDGDHLEIRVEDNGPGI 45 (103)
T ss_pred CHHHHHHHHHHHHHhCcC-------CCCeEEEEEEecCCEEEEEEEeCCCCC
Confidence 468999999999988554 124688999888889999999999875
No 22
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.18 E-value=0.18 Score=54.05 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecC-CCce
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFT 228 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~-~d~~ 228 (303)
....+++....+==.++-++++-+.+..... . -...+++.++++++.+..+.. ......+.+... .+..
T Consensus 484 ~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~--~----~~~~~~l~~ll~~~~~~~~~~----~~~~i~l~~~~~~~~~~ 553 (828)
T PRK13837 484 RAARYIDEIISAGARARLIIDQILAFGRKGE--R----NTKPFDLSELVTEIAPLLRVS----LPPGVELDFDQDQEPAV 553 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--C----CCcEEcHHHHHHHHHHHHHHH----ccCCcEEEEEeCCCCce
Confidence 5556666655443344556777666654321 1 113468888888887765432 223334555433 3445
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC---------------CCeEEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG---------------LEDVTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g---------------~edvtIkISD~g~~~~ 288 (303)
+..-|..|.+++..|++||++++-+ -.+|.|.+... ++.+.|.|+|+|.|..
T Consensus 554 v~~d~~~L~qvl~NLl~NAik~~~~--------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~ 620 (828)
T PRK13837 554 VEGNPAELQQVLMNLCSNAAQAMDG--------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGID 620 (828)
T ss_pred EEECHHHHHHHHHHHHHHHHHHccc--------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCC
Confidence 6666888999999999999998632 13577777654 5779999999999864
No 23
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.17 E-value=0.14 Score=54.69 Aligned_cols=124 Identities=9% Similarity=0.066 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEe--cCCCc
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY--GDPSF 227 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~--g~~d~ 227 (303)
+...+++....+--.+.-++++-+.+..-. .+..-.-...+++.+++++++...+...... .-.+++. .+.+.
T Consensus 431 ~~~~~~~~i~~~~~~l~~li~~ll~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 505 (921)
T PRK15347 431 EQMDLADTARQCTLSLLAIINNLLDFSRIE--SGQMTLSLEETALLPLLDQAMLTIQGPAQSK---SLTLRTFVGAHVPL 505 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccceecccCHHHHHHHHHHHHHHHHHHC---CcEEEEEECCCCCc
Confidence 334556555544444444555555554321 1222333456788899988888776654433 2233332 33344
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
.+..=|..|..++..|+.||+++| .. ..|.|.+...++.+.|.|+|.|.|.
T Consensus 506 ~~~~d~~~l~~il~NLl~NAik~~-----~~----g~I~i~~~~~~~~~~i~V~D~G~Gi 556 (921)
T PRK15347 506 YLHLDSLRLRQILVNLLGNAVKFT-----ET----GGIRLRVKRHEQQLCFTVEDTGCGI 556 (921)
T ss_pred eEEECHHHHHHHHHHHHHHHhhcC-----CC----CCEEEEEEEcCCEEEEEEEEcCCCC
Confidence 555567789999999999999875 11 1388998888899999999999995
No 24
>PRK13557 histidine kinase; Provisional
Probab=96.08 E-value=0.32 Score=47.98 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCC-c
Q 022051 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-F 227 (303)
Q Consensus 149 ~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d-~ 227 (303)
+.+...++.....--.++-++++-+.+.... ..-...+++..+++.+.+.+... .+..-.+.+....+ .
T Consensus 200 ~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~------~~~~~~~~l~~~i~~~~~~~~~~----~~~~~~i~~~~~~~~~ 269 (540)
T PRK13557 200 GRMARSVENIRAAAERAATLTQQLLAFARKQ------RLEGRVLNLNGLVSGMGELAERT----LGDAVTIETDLAPDLW 269 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC------CCCCcccCHHHHHHHHHHHHHHh----cCCCeEEEEecCCCCC
Confidence 3555566665433333444555555544321 11223467777777766655432 22222333333333 2
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec---------------CCCeEEEEEeecCcch
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD---------------GLEDVTIKVLLLFMIC 287 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~---------------g~edvtIkISD~g~~~ 287 (303)
.+..-|..|.+++..|++||.+|+-+. ..|.|.... .++.+.|.|+|+|.|.
T Consensus 270 ~~~~d~~~l~~vl~nll~NA~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi 336 (540)
T PRK13557 270 NCRIDPTQAEVALLNVLINARDAMPEG--------GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGM 336 (540)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHhcccC--------CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCC
Confidence 344457789999999999999986431 124444331 3357899999999985
No 25
>PRK10490 sensor protein KdpD; Provisional
Probab=95.96 E-value=0.32 Score=52.97 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCce-eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT-FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 190 ~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~-f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
..+++.++++++.+..+.... + -.+.++...+.. +..=+..|.+++..|++||++++- . -.+|.|.
T Consensus 737 ~~~~L~eli~~~l~~l~~~~~---~--~~i~l~~~~~~~~v~~D~~~L~qVL~NLL~NAik~s~-----~---g~~I~I~ 803 (895)
T PRK10490 737 EWLTLEEVVGSALQMLEPGLS---G--HPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAG-----A---QAEIGID 803 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhc---C--CCEEEEcCCCCeEEEECHHHHHHHHHHHHHHHHHhCC-----C---CCeEEEE
Confidence 456788888888776654322 1 245555444443 333467899999999999999851 1 2368888
Q ss_pred EecCCCeEEEEEeecCcchh
Q 022051 269 VADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~~ 288 (303)
+...++.+.|.|+|+|.|..
T Consensus 804 ~~~~~~~v~I~V~D~G~GI~ 823 (895)
T PRK10490 804 AHVEGERLQLDVWDNGPGIP 823 (895)
T ss_pred EEEeCCEEEEEEEECCCCCC
Confidence 88888899999999999863
No 26
>PRK10337 sensor protein QseC; Provisional
Probab=95.94 E-value=0.67 Score=45.15 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC-Cce
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFT 228 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~-d~~ 228 (303)
..+.++++....--.+.-++++-+.+..... .....-...+++.++++.+.......... ...++.++.+. ...
T Consensus 271 ~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~ 345 (449)
T PRK10337 271 ARKKALLQLHAGIDRATRLVDQLLTLSRLDS--LDNLQDVAEIPLEDLLQSAVMDIYHTAQQ---AGIDVRLTLNAHPVI 345 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCcccCHHHHHHHHHHHHHHHHHH---cCCEEEEecCCCCce
Confidence 3445665544433334456666666654321 11111123578999998888777654432 33445554432 344
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+..-|..++.++.+|++||++++- . -.+|.|.+... .|.|+|.|.|..
T Consensus 346 ~~~~~~~l~~vl~Nli~NA~k~~~-----~---~~~i~i~~~~~----~i~i~D~G~Gi~ 393 (449)
T PRK10337 346 RTGQPLLLSLLVRNLLDNAIRYSP-----Q---GSVVDVTLNAR----NFTVRDNGPGVT 393 (449)
T ss_pred eecCHHHHHHHHHHHHHHHHhhCC-----C---CCeEEEEEEee----EEEEEECCCCCC
Confidence 455677889999999999999842 1 12477766432 699999999974
No 27
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=95.90 E-value=0.061 Score=52.25 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec-CCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g-~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++.+..+..... .+. .+++.+ ..+..+.--|..|..++.+|+.||++++ . ..|.|.+
T Consensus 311 ~~~l~~~~~~~~~~~~~~~~~-~~~--~~~i~~~~~~~~~~~~~~~l~~~l~nli~NA~~~~-----~-----~~i~i~~ 377 (461)
T PRK09470 311 TFKANSLWSEVLEDAKFEAEQ-MGK--SLTVSAPPGPWPINGNPNALASALENIVRNALRYS-----H-----TKIEVAF 377 (461)
T ss_pred eecHHHHHHHHHHHHHHHHHH-CCC--eEEEecCCcceEEEECHHHHHHHHHHHHHHHHHhC-----C-----CcEEEEE
Confidence 467788888887776654332 232 344443 2345777789999999999999999863 2 2488888
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++++.|.|+|.|.|.-
T Consensus 378 ~~~~~~~~i~V~D~G~Gi~ 396 (461)
T PRK09470 378 SVDKDGLTITVDDDGPGVP 396 (461)
T ss_pred EEECCEEEEEEEECCCCCC
Confidence 8888999999999998863
No 28
>PRK09835 sensor kinase CusS; Provisional
Probab=95.87 E-value=1.1 Score=43.74 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+++.++++++.+..+..-. .....+.+.+. +....--+.+|+.++.++++||++++-+ + .+|.|.+.
T Consensus 335 ~~~l~~~i~~~~~~~~~~~~---~~~~~~~~~~~-~~~v~~d~~~l~~vl~nll~Na~~~~~~-----~---~~I~i~~~ 402 (482)
T PRK09835 335 MLDLADEVGKVFDFFEAWAE---ERGVELRFVGD-PCQVAGDPLMLRRAISNLLSNALRYTPA-----G---EAITVRCQ 402 (482)
T ss_pred eecHHHHHHHHHHHHHHHHh---hCCEEEEEeCC-CcEEEECHHHHHHHHHHHHHHHHhcCCC-----C---CeEEEEEE
Confidence 46788888877776543211 12333444332 2334445788999999999999998521 1 24888888
Q ss_pred cCCCeEEEEEeecCcchh
Q 022051 271 DGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 271 ~g~edvtIkISD~g~~~~ 288 (303)
..++.+.|.|.|.|.|..
T Consensus 403 ~~~~~~~i~v~d~G~gi~ 420 (482)
T PRK09835 403 EVDHQVQLVVENPGTPIA 420 (482)
T ss_pred EeCCEEEEEEEECCCCcC
Confidence 888899999999999854
No 29
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.82 E-value=0.34 Score=51.69 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCcee
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTF 229 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f 229 (303)
....+++....+--.+.-++++-+.+.... .+....-...+++.++++++.+.....+..+ |..-.+.+..+.+..+
T Consensus 326 ~~~~~l~~i~~~~~~l~~li~~ll~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 402 (919)
T PRK11107 326 TQRDYLQTIERSANNLLAIINDILDFSKLE--AGKLVLENIPFSLRETLDEVVTLLAHSAHEK-GLELTLNIDPDVPDNV 402 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecCHHHHHHHHHHHHHHHHHHc-CCEEEEEeCCCCCceE
Confidence 455677766555444445566666655432 1223334457889999999988887666543 2222222323333345
Q ss_pred eecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe--cCC---CeEEEEEeecCcchh
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA--DGL---EDVTIKVLLLFMICL 288 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~--~g~---edvtIkISD~g~~~~ 288 (303)
..=|..|..++..|+.||+++|- . . .|.|.+. ... ..+.|.|+|.|.|..
T Consensus 403 ~~d~~~l~~vl~NLl~NAik~~~-----~-g---~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~ 457 (919)
T PRK11107 403 IGDPLRLQQIITNLVGNAIKFTE-----S-G---NIDILVELRALSNTKVQLEVQIRDTGIGIS 457 (919)
T ss_pred EeCHHHHHHHHHHHHHHHhhcCC-----C-C---cEEEEEEEEecCCCeeEEEEEEEEeCCCcC
Confidence 55678899999999999999862 1 1 2444443 222 258999999999874
No 30
>PRK10604 sensor protein RstB; Provisional
Probab=95.80 E-value=0.051 Score=53.46 Aligned_cols=84 Identities=8% Similarity=-0.115 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecC-CCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 190 ~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~-~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
..+++.+.+++.++..+... .+. .+++..+ .+.....-|..+..++..|++||+|++ . ..|.|+
T Consensus 278 ~~~~l~~~l~~~i~~~~~~~---~~~--~i~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~-----~-----~~I~I~ 342 (433)
T PRK10604 278 SEPDLPAWLSTHLADIQAVT---PEK--TVRLDTPHQGDYGALDMRLMERVLDNLLNNALRYA-----H-----SRVRVS 342 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHh---hcC--cEEEEecCCCceEecCHHHHHHHHHHHHHHHHHhC-----C-----CeEEEE
Confidence 46688888888777655432 222 3333322 223333456679999999999999864 1 258899
Q ss_pred EecCCCeEEEEEeecCcchh
Q 022051 269 VADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~~ 288 (303)
+...++.+.|.|+|.|.|..
T Consensus 343 ~~~~~~~~~I~V~D~G~Gi~ 362 (433)
T PRK10604 343 LLLDGNQACLIVEDDGPGIP 362 (433)
T ss_pred EEEECCEEEEEEEEcCCCCC
Confidence 98888899999999999875
No 31
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.75 E-value=0.049 Score=55.55 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec
Q 022051 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD 271 (303)
Q Consensus 192 ~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~ 271 (303)
+++.+.++..++.-.. .+|....+...+....-.+-.+.|+.+++.|++.||.|++ +. ..|.|.+..
T Consensus 430 ~~l~~~l~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha-----~a----~~i~V~~~~ 496 (569)
T PRK10600 430 PGLRPALEASCEEFSA----RFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHA-----QA----SEVVVTVAQ 496 (569)
T ss_pred CCHHHHHHHHHHHHHH----HhCCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhC-----CC----CeEEEEEEE
Confidence 4566666665554332 2343222222222222122234579999999999998863 21 258888888
Q ss_pred CCCeEEEEEeecCcchh
Q 022051 272 GLEDVTIKVLLLFMICL 288 (303)
Q Consensus 272 g~edvtIkISD~g~~~~ 288 (303)
.++.+.|.|.|.|.|..
T Consensus 497 ~~~~~~l~V~D~G~Gi~ 513 (569)
T PRK10600 497 NQNQVKLSVQDNGCGVP 513 (569)
T ss_pred cCCEEEEEEEECCCCCC
Confidence 88999999999999864
No 32
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.54 E-value=0.086 Score=47.22 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=59.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC-Cceeeec-CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 022051 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (303)
Q Consensus 189 ~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~-d~~f~yV-PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~ 266 (303)
....+...+++.+.+....... .+.+.+.... .....+. +..+..++..|+.||++|+- -++|.
T Consensus 185 ~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~l~~vl~nLi~NAi~~~~---------~~~i~ 250 (336)
T COG0642 185 LELVDLAELLEEVVRLLAPLAQ-----EKGIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTP---------GGEIT 250 (336)
T ss_pred CCCcCHHHHHHHHHHHHHHHHH-----HcCCEEEEecCCCceEeeCHHHHHHHHHHHHHHHhccCC---------CCeEE
Confidence 3444577777777776654433 2223332111 1222222 68999999999999999866 25799
Q ss_pred EEEecCCCeEEEEEeecCcchhh
Q 022051 267 IIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 267 V~I~~g~edvtIkISD~g~~~~~ 289 (303)
|.+...++.++|+|.|.|.|..+
T Consensus 251 i~~~~~~~~i~i~V~D~G~Gi~~ 273 (336)
T COG0642 251 ISVRQDDEQVTISVEDTGPGIPE 273 (336)
T ss_pred EEEEecCCeEEEEEEcCCCCCCH
Confidence 99988888999999999999764
No 33
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.41 E-value=0.1 Score=50.52 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC-CceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~-d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++..... ....++++.... +..+..-|.+|..++..|+.||++++ . ..|.|++
T Consensus 293 ~~~l~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~l~~il~NLl~NA~k~~-----~-----~~i~i~~ 355 (435)
T PRK09467 293 MADLNALLGEVIAAES-------GYEREIETALQPGPIEVPMNPIAIKRALANLVVNAARYG-----N-----GWIKVSS 355 (435)
T ss_pred ccCHHHHHHHHHHHhh-------hcCCeEEEecCCCCceEEECHHHHHHHHHHHHHHHHHhC-----C-----CeEEEEE
Confidence 4567777766654322 234455555433 34777788899999999999999763 1 3589999
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++.+.|.|.|.|-|..
T Consensus 356 ~~~~~~~~i~V~D~G~Gi~ 374 (435)
T PRK09467 356 GTEGKRAWFQVEDDGPGIP 374 (435)
T ss_pred EecCCEEEEEEEecCCCcC
Confidence 8888899999999998863
No 34
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.38 E-value=0.35 Score=52.86 Aligned_cols=126 Identities=10% Similarity=0.110 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEe--cCCC
Q 022051 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY--GDPS 226 (303)
Q Consensus 149 ~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~--g~~d 226 (303)
++.+.+++....+-=.+.-++++-+.+.... .+-.-.-...+++.++++++.+........+ ...+.+. .+.+
T Consensus 479 ~~~~~~l~~i~~~~~~L~~lI~dlLd~srie--~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k---~i~l~~~i~~~~~ 553 (924)
T PRK10841 479 KGVDRLVTAMNNSSSLLLKIISDILDFSKIE--SEQLKIEPREFSPREVINHITANYLPLVVKK---RLGLYCFIEPDVP 553 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCceeeeEEecHHHHHHHHHHHHHHHHHHc---CcEEEEEeCCCCC
Confidence 3566777776554333444566666665432 1112222345789999998888776655543 2233322 3334
Q ss_pred ceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 227 FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 227 ~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
..+..=|..|..++..|+.||+++|- . -.|.|.+...++.+.|.|+|.|.|..
T Consensus 554 ~~v~~D~~~L~qvl~NLl~NAik~t~-----~----G~I~I~v~~~~~~l~i~V~DtG~GI~ 606 (924)
T PRK10841 554 VALNGDPMRLQQVISNLLSNAIKFTD-----T----GCIVLHVRVDGDYLSFRVRDTGVGIP 606 (924)
T ss_pred cEEEECHHHHHHHHHHHHHHHHhhCC-----C----CcEEEEEEEeCCEEEEEEEEcCcCCC
Confidence 45566688899999999999999852 1 13778887788899999999999863
No 35
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.35 E-value=0.54 Score=51.34 Aligned_cols=125 Identities=11% Similarity=-0.039 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEe--cCCCc
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY--GDPSF 227 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~--g~~d~ 227 (303)
+.+..++....+=-.+.-+++.-+.+..-. .+..-.-...+++.++++++.+........+ ...+.+. ...+.
T Consensus 483 ~~~~~l~~I~~~~~~L~~lI~dILdlsrle--~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k---~i~l~~~~~~~~~~ 557 (894)
T PRK10618 483 QQQPELDQLAEQSDVLVRLVDNIQLLNMLE--TQDWKPEQELFSLQDLIDEVLPEVLPAIKRK---GLQLLIHNHLKAEQ 557 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCcccceeECHHHHHHHHHHHHHHHHHHC---CCEEEEEeCCCCCc
Confidence 445555554443323333455544443321 1111112234689999999988877665543 2333333 23444
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC---CCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG---LEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g---~edvtIkISD~g~~~~ 288 (303)
.+..=|..|.+|+.-|+.||+++|- . -.|.|.+... ++.+.|.|+|.|.|..
T Consensus 558 ~v~~D~~~L~QVL~NLL~NAik~t~-----~----G~I~I~v~~~~~~~~~l~I~V~DtG~GI~ 612 (894)
T PRK10618 558 LRIGDRDALRKILLLLLNYAITTTA-----Y----GKITLEVDQDESSPDRLTIRILDTGAGVS 612 (894)
T ss_pred EEEecHHHHHHHHHHHHHHHHHhCC-----C----CeEEEEEEEccCCCcEEEEEEEECCCCCC
Confidence 5556688999999999999999862 1 1366666533 3569999999999964
No 36
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=95.31 E-value=0.026 Score=42.48 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+..|.+++.|++.||+++... .+.|.|.+...++.+.|.|+|.|.|..
T Consensus 3 ~~~l~~~~~~l~~n~~~~~~~--------~~~v~i~~~~~~~~~~i~i~d~g~g~~ 50 (111)
T smart00387 3 PDRLRQVLSNLLDNAIKYTPE--------GGRITVTLERDGDHLEITVEDNGPGIP 50 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--------CCeEEEEEEEcCCEEEEEEEeCCCCCC
Confidence 346889999999999987543 357889998888999999999997764
No 37
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.17 E-value=0.037 Score=46.39 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-CCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-~edvtIkISD~g~~~~ 288 (303)
+.++.||+.||+-|...+ |+|.|... ...-.|.|.|+|.|.-
T Consensus 4 ~~al~ElI~Ns~DA~a~~----------I~I~i~~~~~~~~~i~I~DnG~Gm~ 46 (137)
T PF13589_consen 4 EDALRELIDNSIDAGATN----------IKISIDEDKKGERYIVIEDNGEGMS 46 (137)
T ss_dssp THHHHHHHHHHHHHHHHH----------EEEEEEEETTTTTEEEEEESSS---
T ss_pred HHHHHHHHHHHHHccCCE----------EEEEEEcCCCCCcEEEEEECCcCCC
Confidence 678999999999999876 88888876 4778999999999954
No 38
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.98 E-value=0.072 Score=45.86 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
..+...+-|++.||++.. ..+..-.+|.|++...++.+.|.|+|.|-|.
T Consensus 41 ~~l~lav~Ea~~Nai~Hg-----~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~ 89 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHA-----YKEDEVGEIHIRFEIYEDRLEIVVADNGVSF 89 (161)
T ss_pred HHHHHHHHHHHHHHHHhc-----cCCCCCCeEEEEEEEECCEEEEEEEECCcCC
Confidence 457889999999999854 2222235699999888899999999999885
No 39
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.91 E-value=2.5 Score=39.49 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCC-ce
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FT 228 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d-~~ 228 (303)
..+.+++....+==.+.-|+++.+..... .. ....++.++++.+.+.....+. ....+.+....+ ..
T Consensus 163 ~~~~~~~~i~~~~~~l~~lv~~l~~~~~~----~~----~~~~~l~~~~~~~~~~~~~~~~----~~i~i~~~~~~~~~~ 230 (348)
T PRK11073 163 ALTEYTKVIIEQADRLRNLVDRLLGPQRP----GT----HVTESIHKVAERVVQLVSLELP----DNVRLIRDYDPSLPE 230 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CC----CccccHHHHHHHHHHHHhhhcc----CCcEEEEecCCCCCc
Confidence 45566665443222233344444433221 10 1234777777777666554322 223344443322 34
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-------CC---eEEEEEeecCcchh
Q 022051 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-------LE---DVTIKVLLLFMICL 288 (303)
Q Consensus 229 f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-------~e---dvtIkISD~g~~~~ 288 (303)
+..-+..|..++..|+.||++|+.+ . -++|.|.+... .. .+.|+|+|+|.|..
T Consensus 231 i~~d~~~l~~vl~nLl~NA~~~~~~---~----~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~ 293 (348)
T PRK11073 231 LAHDPDQIEQVLLNIVRNALQALGP---E----GGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIP 293 (348)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHhcc---C----CCeEEEEEccccccccCCccCCceEEEEEEeCCCCCC
Confidence 5566778999999999999999752 1 13466654322 11 36899999999863
No 40
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.84 E-value=0.11 Score=50.02 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=41.1
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhhh
Q 022051 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCI 290 (303)
Q Consensus 232 VPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~~ 290 (303)
+-.||+.|+.|-+-|++| |++. --|.|++...++.+.++|.|+|.|+--.
T Consensus 276 ~e~~l~rivQEaltN~~r-----Ha~A----~~v~V~l~~~~~~l~l~V~DnG~Gf~~~ 325 (365)
T COG4585 276 AEDALFRIVQEALTNAIR-----HAQA----TEVRVTLERTDDELRLEVIDNGVGFDPD 325 (365)
T ss_pred HHHHHHHHHHHHHHHHHh-----ccCC----ceEEEEEEEcCCEEEEEEEECCcCCCcc
Confidence 346889999999999986 4443 2388999999999999999999998755
No 41
>PRK13560 hypothetical protein; Provisional
Probab=94.82 E-value=0.14 Score=53.26 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+++.++++...+.......... ....+.+.++......--+..+..++.+|+.||++++... ..-+.|.|.+.
T Consensus 668 ~~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~-----~~~~~i~i~~~ 741 (807)
T PRK13560 668 DIDFLDYIESLTAHLKNSFAIDF-GRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPD-----GAAGNIKVEIR 741 (807)
T ss_pred hccHHHHHHHHHHHHHHHhcccc-CceEEEEecCccccccccccchHHHHHHHHHHHHHhhccC-----CCCceEEEEEE
Confidence 34677777776666553322111 1123344332211111112235679999999999987532 12346888877
Q ss_pred cC-CCeEEEEEeecCcch
Q 022051 271 DG-LEDVTIKVLLLFMIC 287 (303)
Q Consensus 271 ~g-~edvtIkISD~g~~~ 287 (303)
.. ++.+.|.|+|+|.|.
T Consensus 742 ~~~~~~v~i~V~D~G~GI 759 (807)
T PRK13560 742 EQGDGMVNLCVADDGIGL 759 (807)
T ss_pred EcCCCEEEEEEEeCCCcC
Confidence 65 678999999999985
No 42
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.72 E-value=0.95 Score=50.20 Aligned_cols=87 Identities=9% Similarity=0.112 Sum_probs=57.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec--CCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 022051 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG--DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (303)
Q Consensus 189 ~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g--~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~ 266 (303)
...+++.++++++....+.....+ | -.+.+.. ..+..+..=|..|.+++..|+.||++++-+ ..|.
T Consensus 783 ~~~~~l~~~i~~~~~~~~~~~~~~-~--i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~---------g~i~ 850 (1197)
T PRK09959 783 PQWVDIPTLVQNTCHSFGAIAASK-S--IALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTE---------GAVK 850 (1197)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHhc-C--cEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCC---------CCEE
Confidence 456789999999988877655442 2 2233332 223345556788999999999999998631 1345
Q ss_pred EEEe-----cCCCeEEEEEeecCcch
Q 022051 267 IIVA-----DGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 267 V~I~-----~g~edvtIkISD~g~~~ 287 (303)
|.+. .+...+.|.|+|.|.|.
T Consensus 851 i~~~~~~~~~~~~~~~i~V~D~G~Gi 876 (1197)
T PRK09959 851 ITTSLGHIDDNHAVIKMTIMDSGSGL 876 (1197)
T ss_pred EEEEEeeecCCceEEEEEEEEcCCCC
Confidence 5443 22345889999999986
No 43
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.68 E-value=0.1 Score=42.97 Aligned_cols=49 Identities=18% Similarity=-0.010 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.+..++.|++.||+++..+ ...-.+|.|.+..+++.+.|.|+|.|.|..
T Consensus 39 ~l~~~l~eli~Nai~h~~~-----~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYE-----ENCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHHHhccC-----CCCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 5778899999999965221 112346999999889999999999999874
No 44
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.62 E-value=0.19 Score=52.01 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=65.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEe-cCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 022051 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (303)
Q Consensus 189 ~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~-g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V 267 (303)
-..+.+.++|++|-...+.--. +..+.+++. ++.+.-..-=+.-|++||.-|+.||+-|+-+ .+-|-|.|
T Consensus 453 ~~~v~l~~ai~~Al~ll~~R~~---~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~------~~~~~i~i 523 (603)
T COG4191 453 AGPVSLREAIEGALELLRGRLR---AAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAG------QEDRRLSI 523 (603)
T ss_pred cCCccHHHHHHHHHHHHHHhhh---ccCceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcC------CCCCeeEE
Confidence 3455777777777766543211 233344443 3335566666778999999999999999865 23567999
Q ss_pred EEecCCCeEEEEEeecCcchh
Q 022051 268 IVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 268 ~I~~g~edvtIkISD~g~~~~ 288 (303)
.....++.++|.|+|+|-|..
T Consensus 524 ~~~~~~~~v~l~VrDnGpGi~ 544 (603)
T COG4191 524 RAQREGGQVVLTVRDNGPGIA 544 (603)
T ss_pred EEEecCCeEEEEEccCCCCCC
Confidence 999999999999999999864
No 45
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=94.39 E-value=0.078 Score=53.22 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=42.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 232 VPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-+.+|..++.+|+.||++|..+.. +. -..|.|.+...++++.|.|+|.|.|..
T Consensus 429 ~~~~l~~vl~nLl~NAi~~~~~~~-~~---~~~i~i~~~~~~~~~~i~V~D~G~Gi~ 481 (545)
T PRK15053 429 DSTEFAAIVGNLLDNAFEASLRSD-EG---NKIVELFLSDEGDDVVIEVADQGCGVP 481 (545)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCC-CC---CceEEEEEEECCCEEEEEEEeCCCCcC
Confidence 467899999999999999976432 11 235888888888899999999999864
No 46
>PRK13559 hypothetical protein; Provisional
Probab=94.38 E-value=0.2 Score=47.41 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeec-CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yV-PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++.+.+... .....+.+.+. ++.+..- ...|..++.||+.||+++ +.....-..|.|.+
T Consensus 230 ~v~l~~~~~~~~~~~~-------~~~~~i~~~~~-~~~~~~~~~~~l~~vl~nLi~NA~k~-----~~~~~~~g~i~v~~ 296 (361)
T PRK13559 230 TVEVEELIRAQVAPYA-------PRATRVAFEGP-GIRLGAASVQPLGLVLHELAVNAIKH-----GALSADQGRISISW 296 (361)
T ss_pred cccHHHHHHHHHHhhc-------CCCceEEEECC-CeeeCHHHHHHHHHHHHHHHHhHHHh-----ccccCCCcEEEEEE
Confidence 4566777766654321 12345666653 3333322 246999999999999865 22112235688888
Q ss_pred --ecCCCeEEEEEeecCcchh----hhHHHHHH
Q 022051 270 --ADGLEDVTIKVLLLFMICL----CISFGIFL 296 (303)
Q Consensus 270 --~~g~edvtIkISD~g~~~~----~~~~~~~~ 296 (303)
...+..+.|.+.|.|+|.. --+||.++
T Consensus 297 ~~~~~~~~~~i~v~d~G~~~~~~~~~~g~Gl~i 329 (361)
T PRK13559 297 KPSPEGAGFRIDWQEQGGPTPPKLAKRGFGTVI 329 (361)
T ss_pred EecCCCCeEEEEEECCCCCCCCCCCCCCcHHHH
Confidence 5667889999999998743 22355554
No 47
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=94.35 E-value=0.077 Score=54.57 Aligned_cols=52 Identities=31% Similarity=0.208 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec---CCCeEEEEEeecCcchhh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD---GLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~---g~edvtIkISD~g~~~~~ 289 (303)
+.-|.+++.||+.||++|+-+. ..+|.|.|.+.. +++.+.|.|+|+|.|...
T Consensus 34 ~~~L~qVLkNLIeNAIDa~~~~-----gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~ 88 (535)
T PRK04184 34 ARALYTTVKELVDNSLDACEEA-----GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPP 88 (535)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-----CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCH
Confidence 3558999999999999997532 236789998875 456799999999999754
No 48
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.20 E-value=0.13 Score=44.20 Aligned_cols=48 Identities=17% Similarity=-0.009 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
.+...+-|++-||+++.- .+..-.+|.|.+...++.++|.|+|.|.|.
T Consensus 42 ~l~lav~Ea~~Nai~ha~-----~~~~~~~I~I~~~~~~~~l~i~V~D~G~gf 89 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAY-----KEGENGEIGISFHIYEDRLEIIVSDQGDSF 89 (159)
T ss_pred HHHHHHHHHHHHHHHhcc-----CCCCCCeEEEEEEEeCCEEEEEEEEccccc
Confidence 377789999999987542 212234689998888899999999999884
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=94.14 E-value=0.92 Score=46.58 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+.++=-|+--|+.||+.|+..... ---|++.+....+++.|.|+|+|=|..
T Consensus 425 ~~~litIlGNLidNA~eA~~~~~~-----~k~I~l~i~~~~~~lvieV~D~G~GI~ 475 (537)
T COG3290 425 PHDLVTILGNLIDNALEALLAPEE-----NKEIELSLSDRGDELVIEVADTGPGIP 475 (537)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCC-----CcEEEEEEEecCCEEEEEEeCCCCCCC
Confidence 444555899999999999997221 125999999999999999999998863
No 50
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=94.10 E-value=0.14 Score=50.96 Aligned_cols=49 Identities=16% Similarity=-0.044 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
..|..++.+|+.||++|+-+. .-..|.|++...++.+.|.|+|.|.|..
T Consensus 432 ~~l~~vl~nLl~NAi~~~~~~------~~~~I~i~~~~~~~~~~i~V~D~G~gi~ 480 (542)
T PRK11086 432 HELITILGNLIENALEAVGGE------EGGEISVSLHYRNGWLHCEVSDDGPGIA 480 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhcC------CCcEEEEEEEEcCCEEEEEEEECCCCCC
Confidence 368899999999999986321 1235888888888999999999999864
No 51
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=93.96 E-value=0.1 Score=53.12 Aligned_cols=51 Identities=25% Similarity=0.173 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-CCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-~edvtIkISD~g~~~~~ 289 (303)
.-|.+++.||+.||++|+-+. + ..|.|.|.+..+ .+.+.|.|.|+|.|...
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~-g----~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~ 78 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEA-G----ILPDIKVEIEKIGKDHYKVTVEDNGPGIPE 78 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-C----CCceEEEEEEECCCceEEEEEEECCCCCCH
Confidence 358899999999999997432 1 368899999874 45689999999999754
No 52
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.84 E-value=0.22 Score=40.18 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
.+.-.+-|++-||+++. .....-.+|.|.+...+..+.|.|.|.|.|.
T Consensus 31 ~~~lav~E~~~Nav~H~-----~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~ 78 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHG-----YPGDPDGPVDVRLEVDPDRLRISVRDNGPGF 78 (125)
T ss_pred HHHHHHHHHHHHHHHHc-----CCCCCCcEEEEEEEEcCCEEEEEEEECCCCC
Confidence 46778999999998753 2222235799998899999999999999993
No 53
>PRK14083 HSP90 family protein; Provisional
Probab=93.78 E-value=0.13 Score=53.79 Aligned_cols=51 Identities=22% Similarity=0.102 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+..+.||++||..|.-.+........|-|+|++. .++.-+|.|.|+|.|.-
T Consensus 25 ~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~~~l~I~DnGiGmt 75 (601)
T PRK14083 25 RVYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGGGTLIVEDNGIGLT 75 (601)
T ss_pred HHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCCcEEEEEeCCCCCC
Confidence 4578999999999987654433232456788775 55678999999999974
No 54
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=93.67 E-value=0.13 Score=54.76 Aligned_cols=56 Identities=23% Similarity=0.061 Sum_probs=44.8
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-|.-=+..|..++.||+.||+.|+-+. ..+|.|.|.+..+...+.|.|+|+|-|..
T Consensus 39 gfD~d~r~L~tVLkNLIeNALDAs~~~-----gilp~I~V~Ie~~g~~v~I~VeDNG~GIp 94 (795)
T PRK14868 39 GFDSGARGLVTAVKEAVDNALDATEEA-----GILPDIYVEIEEVGDYYRLVVEDNGPGIT 94 (795)
T ss_pred eccCCHHHHHHHHHHHHHHHHHhCccc-----CCCceEEEEEEECCCEEEEEEEEcCCCCC
Confidence 344444579999999999999997431 23688999999888889999999999964
No 55
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=93.09 E-value=0.16 Score=51.10 Aligned_cols=63 Identities=30% Similarity=0.236 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-CCeEEEEEeecCcchhh----hHHHHHHHHhcc
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVLLLFMICLC----ISFGIFLFLSAF 301 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-~edvtIkISD~g~~~~~----~~~~~~~~~~~~ 301 (303)
--|...+-||.-|||-||=|+- -||-|+|.|... ++..++.+-|+|-|..- =.||=+|+-|=|
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaG-----ILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKf 102 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAG-----ILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKF 102 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcC-----CCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchh
Confidence 3478899999999999997744 399999999986 79999999999999864 357777776544
No 56
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=92.95 E-value=0.42 Score=48.01 Aligned_cols=82 Identities=9% Similarity=0.006 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecC--CCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~--~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
.+++.+.++++.+..+. ..+ ..+.+..+ .....+-.+..+.+++.|++.||++++ .. ..|.|+
T Consensus 431 ~~~l~~~l~~~~~~~~~----~~~--~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~-----~~----~~i~i~ 495 (565)
T PRK10935 431 EANLGSALEEMLDQLRN----QTD--AKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHA-----NA----SEIAVS 495 (565)
T ss_pred CCCHHHHHHHHHHHHHH----hhC--CeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC-----CC----CeEEEE
Confidence 34666777766665442 122 23444322 222223334468899999999999853 21 247787
Q ss_pred EecC-CCeEEEEEeecCcch
Q 022051 269 VADG-LEDVTIKVLLLFMIC 287 (303)
Q Consensus 269 I~~g-~edvtIkISD~g~~~ 287 (303)
+... +..+.|.|.|.|-|.
T Consensus 496 ~~~~~~~~~~i~V~D~G~Gi 515 (565)
T PRK10935 496 CVTNPDGEHTVSIRDDGIGI 515 (565)
T ss_pred EEEcCCCEEEEEEEECCcCc
Confidence 7655 677999999999876
No 57
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=92.65 E-value=0.2 Score=52.71 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-CCeEEEEEeecCcchh
Q 022051 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVLLLFMICL 288 (303)
Q Consensus 236 L~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-~edvtIkISD~g~~~~ 288 (303)
|..++.||+.||++|+-+.. .+|.|.|.+..+ ++.+.|.|+|+|.|..
T Consensus 37 L~~VVkELVeNAIDA~~~~g-----~~p~I~V~I~~~g~~~~~I~V~DNG~GIp 85 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAE-----ILPDIKVEIEKLGSDHYKVAVEDNGPGIP 85 (659)
T ss_pred HHHHHHHHHHHHHHHhhccC-----CCceEEEEEEECCCcEEEEEEEeeCeeCC
Confidence 44999999999999975422 368899999875 4568999999999974
No 58
>PRK03660 anti-sigma F factor; Provisional
Probab=92.47 E-value=0.41 Score=39.62 Aligned_cols=50 Identities=20% Similarity=-0.001 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
..+..++.|++.||++...+ . ..-.+|.|.+...+.++.|.|.|.|.|..
T Consensus 38 ~~l~~~l~eli~Nai~h~~~---~--~~~~~i~i~~~~~~~~l~i~I~D~G~g~~ 87 (146)
T PRK03660 38 TEIKTAVSEAVTNAIIHGYE---N--NPDGVVYIEVEIEEEELEITVRDEGKGIE 87 (146)
T ss_pred HhHHHHHHHHHHHHHHHhcC---C--CCCCEEEEEEEECCCEEEEEEEEccCCCC
Confidence 45777899999999855322 1 11146899988888999999999998854
No 59
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.89 E-value=0.63 Score=44.34 Aligned_cols=45 Identities=27% Similarity=0.023 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.-+..++.||++||+.|. . ..|.|.+..+. ...|.|.|.|-|.-.
T Consensus 21 ~~~~~~l~eLi~Na~dA~-----a-----~~I~i~~~~~~-~~~i~V~DnG~Gi~~ 65 (312)
T TIGR00585 21 ERPASVVKELVENSLDAG-----A-----TRIDVEIEEGG-LKLIEVSDNGSGIDK 65 (312)
T ss_pred hhHHHHHHHHHHHHHHCC-----C-----CEEEEEEEeCC-EEEEEEEecCCCCCH
Confidence 447889999999999982 1 24777776543 456999999999865
No 60
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=88.86 E-value=0.26 Score=51.79 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.=|++++.||+.||+-+.+..+ .+.|+|+|..+. .|.|+|+|-|...
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~------a~~I~V~i~~dg---~I~V~DnGrGIP~ 82 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGH------GKRIEVTLHADG---SVSVRDNGRGIPV 82 (631)
T ss_pred chhhhhhhhhhccccchhhcCC------CCEEEEEEeCCC---cEEEEEcCCCCCc
Confidence 4689999999999999876422 467999998753 8999999988653
No 61
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=88.72 E-value=32 Score=36.41 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceE
Q 022051 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (303)
Q Consensus 108 ~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGi 187 (303)
..|.++-++|-..=.|-+.-+--....++..+++++.. |.+..++-.|.-++-==-|.=++++--+- .--|.|.
T Consensus 484 ~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~e-Drevfd~~tdTIirQV~dI~rMVdeF~af-ARmP~p~---- 557 (712)
T COG5000 484 AAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDE-DREVFDRCTDTIIRQVEDIKRMVDEFRAF-ARMPAPK---- 557 (712)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCC----
Confidence 34666666665543333333333334455556654332 23344444443332111111223333222 2112232
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceEEe-cCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 022051 188 IDTKMSPVQVARNASEHARCVCLREYGSAP-DFNIY-GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (303)
Q Consensus 188 I~~~~~~~~vv~~a~~~a~~lC~~~yg~~P-~v~i~-g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI 265 (303)
-.+.++.+++++++..-+ .|.++ .+..+ |+.+..+.+=+.-|-+.+.-|+|||-.|.=+.-..+ .+.--|
T Consensus 558 -~e~~dL~~ll~e~~~L~e------~~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e-~~~~~i 629 (712)
T COG5000 558 -LEKSDLRALLKEVSFLYE------IGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEE-RRTALI 629 (712)
T ss_pred -CCcchHHHHHHHHHHHHh------ccCCCeEEEeecCCCceeeecCHHHHHHHHHHHHHhHHHHhhhccccc-CCcceE
Confidence 135577777777665322 23333 22232 566899999999999999999999999865443222 111137
Q ss_pred EEEEecCCCeEEEEEeecCcchh
Q 022051 266 RIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 266 ~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+++....+..+.+-|.|+|.|..
T Consensus 630 ~~~~~~~~g~i~v~V~DNGkG~p 652 (712)
T COG5000 630 RVSLDDADGRIVVDVIDNGKGFP 652 (712)
T ss_pred EEEEecCCCeEEEEEecCCCCCC
Confidence 78877778889999999999974
No 62
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=88.44 E-value=0.63 Score=47.78 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
|+=+|+.|-+-||++ |... --|+|++..+..+++++|-|+|.|.
T Consensus 481 HlLqIvREAlsNa~K-----Ha~A----s~i~V~~~~~~g~~~~~VeDnG~Gi 524 (574)
T COG3850 481 HLLQIVREALSNAIK-----HAQA----SEIKVTVSQNDGQVTLTVEDNGVGI 524 (574)
T ss_pred HHHHHHHHHHHHHHH-----hccc----CeEEEEEEecCCeEEEEEeeCCcCC
Confidence 677789999999986 4332 2399999999999999999999985
No 63
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=87.46 E-value=0.15 Score=53.18 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 236 L~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
|+|++.||+-||+-|-+..| ..-|+|+|-.+. .|.|+|+|-|...
T Consensus 2 L~~~v~ElvdNAiD~~~~g~------at~I~V~i~~~g---~I~V~DnG~GIp~ 46 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGY------MDTIKVTIDKDN---SISVEDNGRGIPV 46 (594)
T ss_pred ceEEEeeehhcccchhccCC------CCEEEEEEeCCC---eEEEEEeCCceeC
Confidence 68899999999999876533 335999997654 8999999998765
No 64
>PRK10547 chemotaxis protein CheA; Provisional
Probab=87.35 E-value=3.7 Score=43.59 Aligned_cols=91 Identities=14% Similarity=0.018 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecC-chHHHH---HHHHHHHHHHHHHHHhcC---CC-CCCCCe
Q 022051 194 PVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVP-SHLHLM---VFELVKNSLRAVEERYMD---SD-KVAPPI 265 (303)
Q Consensus 194 ~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVP-sHL~yI---l~ELlKNAmRAtvE~h~~---~~-~~lPPI 265 (303)
+..+..+--+.+++++.. .|...++.+.|.. + .+. .-++.+ |..|+.||+++.+|.-.. .+ +.--.|
T Consensus 345 ~~~~~~~~~rlvrdla~~-~gk~v~l~~~g~~-~---~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 345 MEYVFSRFPRLVRDLAGK-LGKQVELTLVGSS-T---ELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcEEEEEeCCc-e---ecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 344555555566666654 3666666676642 2 233 345665 578999999998874211 00 111237
Q ss_pred EEEEecCCCeEEEEEeecCcchhh
Q 022051 266 RIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 266 ~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.|......+.+.|.|+|.|.|.--
T Consensus 420 ~l~a~~~~~~v~I~V~DdG~GId~ 443 (670)
T PRK10547 420 ILSAEHQGGNICIEVTDDGAGLNR 443 (670)
T ss_pred EEEEEEcCCEEEEEEEeCCCCCCH
Confidence 888877788999999999999763
No 65
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.67 E-value=2.3 Score=36.35 Aligned_cols=50 Identities=20% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 236 L~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
+...+.|++-|+.++. |... +.-=+|.|.....+..+.|+|.|+|.|-.+
T Consensus 41 l~~av~E~~~N~v~Ha---~~~~-~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~ 90 (146)
T COG2172 41 LAIAVSEALTNAVKHA---YKLD-PSEGEIRIEVSLDDGKLEIRIWDQGPGIED 90 (146)
T ss_pred HHHHHHHHHHHHHHHH---hhcC-CCCceEEEEEEEcCCeEEEEEEeCCCCCCC
Confidence 4567999999998763 2211 101258888888889999999999977443
No 66
>PRK05218 heat shock protein 90; Provisional
Probab=85.44 E-value=1.3 Score=46.37 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CC--CCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~----~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+..+.||+.||.-|--...- +. ...-++.+|.|.-.++.-+|+|+|+|.|.-
T Consensus 28 ~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt 85 (613)
T PRK05218 28 EIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMT 85 (613)
T ss_pred hHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCC
Confidence 34689999999999754321 00 011234455554333444699999999964
No 67
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=84.67 E-value=0.51 Score=50.58 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.=|||++.||+.||.-=.+.-| .-.|+|+|-.+. +|.|+|+|-|...
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~------a~~I~V~i~~dg---sIsV~DnGrGIPv 82 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGH------CDDITVTIHADG---SVSVSDNGRGIPT 82 (756)
T ss_pred cchhhhhhHhhcccccccccCC------CCEEEEEEcCCC---eEEEEEcCCcccC
Confidence 4699999999999996222122 235999997643 8999999988754
No 68
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=84.36 E-value=0.53 Score=49.55 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.=|+|++.||+-||+--...- ....|+|+|..+. .|.|+|+|-|...
T Consensus 36 ~gl~~~v~ElvdNaiDe~~ag------~a~~I~V~i~~~g---~I~V~DnG~GIp~ 82 (638)
T PRK05644 36 RGLHHLVYEIVDNSIDEALAG------YCDHIEVTINEDG---SITVTDNGRGIPV 82 (638)
T ss_pred hhHHhhhHHhhhcccccccCC------CCCEEEEEEeCCC---cEEEEEeCccccC
Confidence 358999999999999633211 2456999998654 8999999988765
No 69
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=83.43 E-value=45 Score=36.46 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec
Q 022051 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPS-HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD 271 (303)
Q Consensus 193 ~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPs-HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~ 271 (303)
.+.++|..|...++..-..+ .+.++-..|+.+..+-+ -++++++-|+.||.|.+ .+ -.-|+|.+..
T Consensus 737 ~veEvVg~Al~r~~k~~~~~-----~i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kya-----p~---~s~I~I~~~~ 803 (890)
T COG2205 737 LVEEVVGEALQRLRKRFTGH-----KIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYA-----PP---GSEIRINAGV 803 (890)
T ss_pred hHHHHHHHHHHHhhhhcCCc-----eEEEecCCCCceEecCHHHHHHHHHHHHHHHHhhC-----CC---CCeEEEEEEE
Confidence 56677777777665543333 26677677877777755 46899999999998753 22 2348888888
Q ss_pred CCCeEEEEEeecCcchh
Q 022051 272 GLEDVTIKVLLLFMICL 288 (303)
Q Consensus 272 g~edvtIkISD~g~~~~ 288 (303)
..+++.+.|.|+|-|..
T Consensus 804 ~~~~v~~~V~DeGpGIP 820 (890)
T COG2205 804 ERENVVFSVIDEGPGIP 820 (890)
T ss_pred ecceEEEEEEeCCCCCC
Confidence 88999999999999964
No 70
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=82.50 E-value=0.77 Score=48.46 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
=|+|++.||+-||+--.+..| ...|+|+|..+. .|.|+|+|-|...
T Consensus 30 gl~~vv~Elv~NaiDe~~ag~------a~~I~V~i~~~g---~I~V~DnG~GIp~ 75 (654)
T TIGR01059 30 GLHHLVYEVVDNSIDEAMAGY------CDTINVTINDDG---SVTVEDNGRGIPV 75 (654)
T ss_pred hHHhhhHHhhhccccccccCC------CCEEEEEEeCCC---cEEEEEeCCCcCc
Confidence 489999999999997332111 346999998654 3999999988764
No 71
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=81.80 E-value=2.7 Score=41.48 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
|.-+-+++--++-|||.+ +.++. -|.|.+..-++.+.|.|||+|+|..
T Consensus 340 ~DK~tQVldNii~NA~KY-----sP~Gg---~Itv~~~~~~~~v~iSI~D~G~gIP 387 (459)
T COG5002 340 PDKMTQVLDNIISNALKY-----SPDGG---RITVSVKQRETWVEISISDQGLGIP 387 (459)
T ss_pred hhHHHHHHHHHHHHHhhc-----CCCCC---eEEEEEeeeCcEEEEEEccCCCCCC
Confidence 556778888899999865 33333 4889998988999999999999976
No 72
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=79.99 E-value=47 Score=30.19 Aligned_cols=119 Identities=18% Similarity=0.040 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceee
Q 022051 151 IHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP 230 (303)
Q Consensus 151 i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~ 230 (303)
..+|+..|-. || +-|+.=|=.|+.. . ..+.+.+...+...+....-| -+......+..++++.+.
T Consensus 52 ~~~~~~~~~~-Ri--~sla~~He~L~~s-~--------~~~~~~~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~~l~ 116 (221)
T COG3920 52 VLEALRESQN-RI--QSLALIHELLYKS-G--------DDTWDFASYLELLASNLFPSY---GGKDIRLILDSGPNVFLD 116 (221)
T ss_pred HHHHHHHHHH-HH--HHHHHHHHHHhcC-C--------cceEcHHHHHHHHHHHHHHhc---CCCCceEEEecCCceEEC
Confidence 6666666543 33 2334445555532 1 123466666666555554433 223344455444432221
Q ss_pred -ecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCe--EEEEEeecCcchhh
Q 022051 231 -YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLED--VTIKVLLLFMICLC 289 (303)
Q Consensus 231 -yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~ed--vtIkISD~g~~~~~ 289 (303)
=.-..|--|+-||.-||.+ |+-.+.+---|+|++..++++ ..+.|+|+|+|-.-
T Consensus 117 ~d~A~~Lgliv~EL~tNa~K-----haf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 117 PDTAVPLGLIVHELVTNALK-----HAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred chhhHHHHHHHHHHHHHHHH-----hcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 1122477899999999986 443322234588999987764 99999999999874
No 73
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=79.60 E-value=1.3 Score=46.70 Aligned_cols=47 Identities=30% Similarity=0.264 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.=|+|++.|++.||.-=.+..| .-.|+|+|.. |=+|.|+|+|-|...
T Consensus 33 ~GL~hlv~EIvdNavDE~~ag~------~~~I~V~i~~---dgsitV~DnGrGIPv 79 (637)
T TIGR01058 33 KGLHHLVWEIVDNSVDEVLAGY------ADNITVTLHK---DNSITVQDDGRGIPT 79 (637)
T ss_pred chhheehhhhhcchhhhhhcCC------CcEEEEEEcC---CCeEEEEECCCcccC
Confidence 4589999999999987444333 2359999974 338999999988764
No 74
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=78.79 E-value=2.6 Score=44.14 Aligned_cols=43 Identities=28% Similarity=0.074 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 236 L~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
+..++.||+.||+.|- . .-|+|.|..| ....|+|.|+|-|...
T Consensus 23 ~~svvkElveNsiDAg-----a-----t~I~v~i~~~-g~~~i~V~DnG~Gi~~ 65 (617)
T PRK00095 23 PASVVKELVENALDAG-----A-----TRIDIEIEEG-GLKLIRVRDNGCGISK 65 (617)
T ss_pred HHHHHHHHHHHHHhCC-----C-----CEEEEEEEeC-CeEEEEEEEcCCCCCH
Confidence 5678999999999962 1 2488999644 4578999999999764
No 75
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=77.46 E-value=4.9 Score=42.95 Aligned_cols=50 Identities=22% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhc----CC--CCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 239 MVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 239 Il~ELlKNAmRAtvE~h~----~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-|.||+-||..|.-..+- +. ...-+.+.|.|...++..++.|.|+|.|..
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt 84 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMT 84 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCC
Confidence 478999999999866431 11 112356888888777888999999999964
No 76
>PTZ00130 heat shock protein 90; Provisional
Probab=75.16 E-value=3.6 Score=44.54 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHH-hc---CC--CCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 239 MVFELVKNSLRAVEER-YM---DS--DKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 239 Il~ELlKNAmRAtvE~-h~---~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-|.||+.||-.|.-.. +. +. ...-++++|.|...++.-++.|+|+|.|..
T Consensus 92 FLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT 147 (814)
T PTZ00130 92 FLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMT 147 (814)
T ss_pred eeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCC
Confidence 3679999999996422 21 11 112357788888777777999999999863
No 77
>PF14501 HATPase_c_5: GHKL domain
Probab=73.58 E-value=9.1 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeec
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLL 283 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~ 283 (303)
.|--++.=||.||++|..+.. + -+.|+|.+...++.+.|.|+-.
T Consensus 5 dl~~il~nlldNAiea~~~~~-~----~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYE-D----KRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-C----CcEEEEEEEecCCEEEEEEEEC
Confidence 456788899999999966532 1 4679999999999999988754
No 78
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=72.41 E-value=7.7 Score=39.69 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=51.0
Q ss_pred hhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 211 REYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 211 ~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
..||..=+|+++-++.+.=..||+- ++.=|..||.+.-.-+-.+. =-|.|++..-+.|+-|.|+|+|+|-
T Consensus 435 ARF~~rL~v~i~id~~l~~~~iP~f---ilQPLVENAIKHG~~~~~~~----g~V~I~V~~~d~~l~i~VeDng~li 504 (557)
T COG3275 435 ARFGDRLDVVIDIDEELRQVQIPSF---ILQPLVENAIKHGISQLKDT----GRVTISVEKEDADLRIEVEDNGGLI 504 (557)
T ss_pred HhcCCceEEEEecCHHHhhccCchh---hhhHHHHHHHHhcccchhcC----CceEEEEEEeCCeEEEEEecCCCCc
Confidence 4467777888877777777889975 56666779886544322222 2388888888999999999999985
No 79
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=71.71 E-value=65 Score=34.38 Aligned_cols=62 Identities=19% Similarity=0.068 Sum_probs=43.7
Q ss_pred eecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh----hHHHHHHHH
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC----ISFGIFLFL 298 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~----~~~~~~~~~ 298 (303)
+.=|.-|-....-|+-||.+. +. ++-|+|+|....-+.++|+-++|+|-|.-- =+|+||.=+
T Consensus 631 ~~d~~~l~qv~~NLi~Naik~-----~~--~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl 696 (750)
T COG4251 631 AADATQLGQVFQNLIANAIKF-----GG--PENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRL 696 (750)
T ss_pred ecCHHHHHHHHHHHHhhheec-----CC--CCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhc
Confidence 333555666677777777654 22 336899999888899999999999999632 356666533
No 80
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=70.93 E-value=7.3 Score=40.96 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHh----cCC--CCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 238 LMVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 238 yIl~ELlKNAmRAtvE~h----~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
--|.||+-||--|-=... .+. ...-++.+|.|+-.++.=|+.|+|+|.|..
T Consensus 30 IFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT 86 (623)
T COG0326 30 IFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMT 86 (623)
T ss_pred HHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCC
Confidence 358899999998864432 111 123457888888888889999999999964
No 81
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=70.15 E-value=2.4 Score=44.45 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=38.7
Q ss_pred ceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 227 FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 227 ~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
-++.|+|. |+||+.|++-||.-=-+. +.....--|+|+|. |=+|.|.|+|-|...
T Consensus 38 ~~~~~~~G-L~hi~~EIldNavDe~~~---~~~g~~~~I~V~i~----dgsisV~dnGrGIPv 92 (602)
T PHA02569 38 TQVEYVPG-LVKIIDEIIDNSVDEAIR---TNFKFANKIDVTIK----NNQVTVSDNGRGIPQ 92 (602)
T ss_pred cccccccc-ceeeeehhhhhhhhhhhc---cCCCCCcEEEEEEc----CCEEEEEECCCcccC
Confidence 35677776 899999999999874332 11112335999996 446889999988764
No 82
>PLN03128 DNA topoisomerase 2; Provisional
Probab=68.06 E-value=5.3 Score=44.91 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=39.4
Q ss_pred ceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 227 FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 227 ~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
-++.|||. |+||+.|++-||.-=-+ .+ ...--|+|+|.. +|=+|.|.|+|-|...
T Consensus 45 ~~v~~vpG-L~ki~dEIldNAvDe~~----~~-g~~~~I~V~i~~--~dgsIsV~DnGrGIPv 99 (1135)
T PLN03128 45 REVTYVPG-LYKIFDEILVNAADNKQ----RD-PSMDSLKVDIDV--EQNTISVYNNGKGIPV 99 (1135)
T ss_pred eccccchh-HHHHHHHHHHHHHHHhh----hc-CCCcEEEEEEEc--CCCeEEEEecCccccC
Confidence 35778886 99999999999975221 11 124468999964 3447889999988764
No 83
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=64.24 E-value=7.4 Score=44.60 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=39.5
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDS--DKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
++.|||. |+||+.|++-||.-=-+ ++ ....--|+|+|..... +|.|.|+|-|...
T Consensus 51 ~v~~vpG-L~ki~dEIldNAvDe~~----r~~~~g~~~~I~V~i~~d~g--~IsV~dnGrGIPv 107 (1388)
T PTZ00108 51 TITYVPG-LYKIFDEILVNAADNKA----RDKGGHRMTYIKVTIDEENG--EISVYNDGEGIPV 107 (1388)
T ss_pred cccccch-hhhhHHHHhhhhhhhhc----ccCCCCCccEEEEEEeccCC--eEEEEecCCcccC
Confidence 5778886 99999999999975322 11 1234569999975433 5788999988764
No 84
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=63.46 E-value=1.9 Score=45.07 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.=|||++.|++.||+-=.+--|.+ -|+|+|- +|=+|.|.|+|-|..
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~------~I~V~l~---~d~sisV~DnGRGIP 80 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYAD------RIDVTLH---EDGSISVEDNGRGIP 80 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCc------EEEEEEc---CCCeEEEEECCCCCc
Confidence 569999999999999866655654 3889985 666788999999865
No 85
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=62.31 E-value=1.1 Score=48.77 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.=|||+++|++-||.-=.+.-| .--|+|+|-. |=+|.|+|.|-|..|
T Consensus 128 ~GLhhLv~EIlDNSVDE~laG~------~~~I~V~i~~---DgsItV~DnGRGIPv 174 (903)
T PTZ00109 128 KGLHQLLFEILDNSVDEYLAGE------CNKITVVLHK---DGSVEISDNGRGIPC 174 (903)
T ss_pred CcceEEEEEEeeccchhhccCC------CcEEEEEEcC---CCeEEEEeCCccccc
Confidence 4589999999999987433322 3359999954 457899999999887
No 86
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=61.59 E-value=3.1 Score=27.32 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.9
Q ss_pred EeecCcchhhhHHHHHHHHhc
Q 022051 280 VLLLFMICLCISFGIFLFLSA 300 (303)
Q Consensus 280 ISD~g~~~~~~~~~~~~~~~~ 300 (303)
|||.-++.++++||++.|+..
T Consensus 2 IsD~qL~~lan~lG~~~~~LI 22 (35)
T PF10215_consen 2 ISDVQLYTLANFLGVAAMVLI 22 (35)
T ss_dssp -SSHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999988753
No 87
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=61.11 E-value=18 Score=36.07 Aligned_cols=46 Identities=15% Similarity=-0.009 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.||.++.|++.|-+ +|.+. ..|.+.+-.++|-+...|+|+|.|...
T Consensus 410 TLyRl~QE~LNNI~-----KHA~A----S~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 410 TLYRLCQELLNNIC-----KHADA----SAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred eHHHHHHHHHHHHH-----hcccc----ceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 48999999999966 46543 247777778889999999999999754
No 88
>PLN03237 DNA topoisomerase 2; Provisional
Probab=60.49 E-value=8.8 Score=44.12 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=38.7
Q ss_pred ceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 227 FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 227 ~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
-++.|+|. |+||+.|++-||.-=-+ .+ ...--|+|+|... |=+|.|.|+|-|...
T Consensus 70 ~~v~~vpG-L~kifdEIldNAvDe~~----r~-g~~~~I~V~I~~~--~gsIsV~DnGRGIPV 124 (1465)
T PLN03237 70 RSVTYVPG-LYKIFDEILVNAADNKQ----RD-PKMDSLRVVIDVE--QNLISVYNNGDGVPV 124 (1465)
T ss_pred eeccccch-hhhhHHHHhhhhHhHHh----hc-CCCCEEEEEEEcC--CCEEEEEecCccccC
Confidence 35677775 99999999999976321 11 1245699999633 336889999988753
No 89
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=58.86 E-value=40 Score=33.33 Aligned_cols=57 Identities=21% Similarity=0.086 Sum_probs=41.2
Q ss_pred cCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 223 GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 223 g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+.+..--+-+..-||.++.|-+-| ||+|... --|.|....-.+-|..-|+|+|-|.-
T Consensus 347 ~~p~~l~~e~~talyRv~QEaltN-----IErHa~A----trv~ill~~~~d~vql~vrDnG~GF~ 403 (459)
T COG4564 347 TQPGKLKPEVATALYRVVQEALTN-----IERHAGA----TRVTILLQQMGDMVQLMVRDNGVGFS 403 (459)
T ss_pred CCcccCCcHHHHHHHHHHHHHHHH-----HHhhcCC----eEEEEEeccCCcceEEEEecCCCCcc
Confidence 433344455566789999999877 7999743 23556666667999999999999864
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=53.74 E-value=41 Score=33.70 Aligned_cols=73 Identities=15% Similarity=-0.013 Sum_probs=45.7
Q ss_pred HHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 209 CLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 209 C~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+...||..=++.+.-+....=.-+|. -++.=|+.||+.|-+|.-.+.+ -|.|.+...+..+.|.|+|+|.|.-
T Consensus 327 q~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~~~~~----~I~i~~~~~~~~i~i~i~Dng~g~~ 399 (456)
T COG2972 327 QKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPKRPGG----SIAISAKKQDDVIQISISDNGPGID 399 (456)
T ss_pred HHhccCcceEEEeccCcccccccCch---HHHhHHHHHHHHHhcccCCCCC----EEEEEEEEcCCEEEEEEeeCCCCCC
Confidence 34455665555544322222233443 3677788999988777432211 2666666778999999999999864
No 91
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=53.20 E-value=28 Score=35.84 Aligned_cols=82 Identities=22% Similarity=0.188 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcC--CCC--ceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 022051 192 MSPVQVARNASEHARCVCLREYG--SAP--DFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (303)
Q Consensus 192 ~~~~~vv~~a~~~a~~lC~~~yg--~~P--~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V 267 (303)
++..++++.|-+....--...-| .-| .+-|-|+ ---+++++.-|+-||+.|.- |- .|-|+|
T Consensus 525 V~L~~~v~~AweLl~~khk~rQ~~Li~ptD~~~V~gd--------~v~ieQVlvNl~~NaldA~~--h~-----~p~i~~ 589 (673)
T COG4192 525 VRLNSVVEQAWELLQTKHKRRQIKLINPTDDLMVMGD--------AVSIEQVLVNLIVNALDAST--HF-----APWIKL 589 (673)
T ss_pred ccHHHHHHHHHHHHHhhhhhccccccCCcccceecch--------hhhHHHHHHHHHHHHHhhhc--cC-----CceEEE
Confidence 46667777777765543222222 112 1222232 12479999999999999842 31 366777
Q ss_pred EEec-CCCeEEEEEeecCcchh
Q 022051 268 IVAD-GLEDVTIKVLLLFMICL 288 (303)
Q Consensus 268 ~I~~-g~edvtIkISD~g~~~~ 288 (303)
+.-. ..|++.|-|.|+|-|-.
T Consensus 590 ~~~~~~~e~l~i~i~DnGqGwp 611 (673)
T COG4192 590 IALGTEQEMLRIAIIDNGQGWP 611 (673)
T ss_pred EeecCcccceEEEEecCCCCCc
Confidence 7765 45999999999999976
No 92
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=53.11 E-value=6.4 Score=41.49 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
+|++.||+-||+-=.+.-+ .--|+|+|..+ =.|.|+|+|-|...
T Consensus 32 ~~lv~ElvdNsiDE~~ag~------a~~I~V~i~~d---~~I~V~DnGrGIp~ 75 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGF------ASIIMVILHQD---QSIEVFDNGRGMPV 75 (625)
T ss_pred ceeehhhhhcccchhhcCC------CCEEEEEEeCC---CeEEEEecCCccCc
Confidence 7899999999998222112 22499999655 47999999998764
No 93
>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]
Probab=50.14 E-value=21 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=15.8
Q ss_pred HHHHHHH------------HHhcCCCCCCCCeEEE
Q 022051 246 NSLRAVE------------ERYMDSDKVAPPIRII 268 (303)
Q Consensus 246 NAmRAtv------------E~h~~~~~~lPPI~V~ 268 (303)
|||-+|+ |.-.. ..++|||.|.
T Consensus 32 ~am~~tM~g~t~~~sc~l~e~~a~-aGelpPvDVL 65 (119)
T COG5119 32 NAMMETMTGKTPPASCGLTEEDAA-AGELPPVDVL 65 (119)
T ss_pred HHHHHHhcCCCCCccccchHhHHh-cCCCCCceeE
Confidence 8888888 43322 3679999886
No 94
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=42.74 E-value=72 Score=30.79 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=49.3
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC---CceeeecCchHHH-HHHHHHHHHHHHHHHHhcCCCCCCC
Q 022051 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP---SFTFPYVPSHLHL-MVFELVKNSLRAVEERYMDSDKVAP 263 (303)
Q Consensus 188 I~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~---d~~f~yVPsHL~y-Il~ELlKNAmRAtvE~h~~~~~~lP 263 (303)
++...++.+ .+.-+..|.+.|-..|-==|-|.. |++..+.|.-|-= ==+|.+ +++++|.+.++.-
T Consensus 78 ~~~pl~~~q-----l~~i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~---V~~Vid~~~~~~~--- 146 (328)
T KOG2904|consen 78 VDDPLVILQ-----LESIRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEW---VEAVIDALNNSEH--- 146 (328)
T ss_pred hccccchhH-----HHHHHHHHHHHHhcCChhheeccCccCCceEEecCCeeecCccHHHH---HHHHHHHHhhhhh---
Confidence 444455544 345667788777766643344443 5677776664310 012322 3666666654321
Q ss_pred CeEEEEecCCCeEEEEEeecCcchhhhHHHHH
Q 022051 264 PIRIIVADGLEDVTIKVLLLFMICLCISFGIF 295 (303)
Q Consensus 264 PI~V~I~~g~edvtIkISD~g~~~~~~~~~~~ 295 (303)
+++. +|.|.|.|+-|||.++.
T Consensus 147 ------~~~~-----~ildlgtGSGaIslsll 167 (328)
T KOG2904|consen 147 ------SKHT-----HILDLGTGSGAISLSLL 167 (328)
T ss_pred ------cccc-----eEEEecCCccHHHHHHH
Confidence 0011 79999999999998875
No 95
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=40.06 E-value=79 Score=30.97 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCce---eeecCchHHHHHHHHHHHHHHHHHHH---hcCC-CCCCC
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT---FPYVPSHLHLMVFELVKNSLRAVEER---YMDS-DKVAP 263 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~---f~yVPsHL~yIl~ELlKNAmRAtvE~---h~~~-~~~lP 263 (303)
..|+++|.++....|+. .++. .+.+.-+=|-+ +.-=+.+|.+++.-+.|||+.|---+ ++.- -..-|
T Consensus 200 ~~NIH~VLerV~~lv~~----e~~~--~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~ 273 (363)
T COG3852 200 PVNIHEVLERVRALVEA----EFAD--NVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRT 273 (363)
T ss_pred cchHHHHHHHHHHHHhc----ccCC--ceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecc
Confidence 45888887666555532 2222 23332111111 22236789999999999999996521 1110 12367
Q ss_pred CeEEEEecCCCeE--EEEEeecCcchh
Q 022051 264 PIRIIVADGLEDV--TIKVLLLFMICL 288 (303)
Q Consensus 264 PI~V~I~~g~edv--tIkISD~g~~~~ 288 (303)
-++++|+....-+ -|.|-|+|=|..
T Consensus 274 ~~q~~i~g~r~rl~l~leViDNGPGVP 300 (363)
T COG3852 274 GIQLTIAGTRYRLALPLEVIDNGPGVP 300 (363)
T ss_pred ceEEEccCceeEeeeeeEEecCCCCCC
Confidence 8999999886444 455889998865
No 96
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=38.29 E-value=71 Score=34.41 Aligned_cols=91 Identities=18% Similarity=0.097 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHH---HHHHHHHHHHHHHHHhc--CCCCCCCC--e
Q 022051 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLM---VFELVKNSLRAVEERYM--DSDKVAPP--I 265 (303)
Q Consensus 193 ~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yI---l~ELlKNAmRAtvE~h~--~~~~~lPP--I 265 (303)
-..+++.+=-+.+|+++ ..+|..-+++|.|... ..- -+-|+.| |.=|+.||+-.=+|.=. ....+.|- |
T Consensus 391 P~~~vf~RfpR~VRdla-~~lgK~V~L~ieG~~t-elD--ksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I 466 (716)
T COG0643 391 PFEQVFSRFPRMVRDLA-RKLGKQVELVIEGEDT-ELD--KSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTI 466 (716)
T ss_pred eHHHHHhhccHHHHHHH-HHhCCeeEEEEecCCe-eeh--HHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceE
Confidence 34556666667777776 4558888999998531 000 1123333 56678999876555311 01122333 4
Q ss_pred EEEEecCCCeEEEEEeecCcch
Q 022051 266 RIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 266 ~V~I~~g~edvtIkISD~g~~~ 287 (303)
++....-.+++.|+|+|-|.|.
T Consensus 467 ~L~A~~~gn~ivIev~DDG~Gi 488 (716)
T COG0643 467 TLSAYHEGNNIVIEVSDDGAGI 488 (716)
T ss_pred EEEEEcCCCeEEEEEeeCCCCC
Confidence 5555566799999999999996
No 97
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=35.75 E-value=80 Score=23.78 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEec-CCCeEEEEEeecCcchh
Q 022051 248 LRAVEERYMDSDKVAPPIRIIVAD-GLEDVTIKVLLLFMICL 288 (303)
Q Consensus 248 mRAtvE~h~~~~~~lPPI~V~I~~-g~edvtIkISD~g~~~~ 288 (303)
+|+-||.| .-|-+-..+. ++..+||||.|...|=.
T Consensus 4 lr~iiE~a------flPl~C~ct~~~~~smtvrl~d~~sg~~ 39 (69)
T PF07865_consen 4 LRQIIEQA------FLPLRCECTIAPDGSMTVRLFDPASGRV 39 (69)
T ss_pred HHHHHHHc------CCCceeEEEECCCCcEEEEEecCCCCcE
Confidence 58889977 4455555543 45689999999877744
No 98
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=34.39 E-value=2e+02 Score=21.73 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=42.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhcCC--ccccCCchHHHHHHHH-HHHHHHhhcCCCCCCchhHHHHHHHH
Q 022051 49 SAQFLHKELPIRIARRAIELETLP--YGLSEKPAVLKVRDWY-LDSFRDLRSFPDIRSTSDERDFTQMI 114 (303)
Q Consensus 49 sa~fl~~ELPvRlA~ri~~l~~LP--~~l~~nP~i~~V~~~Y-~~Sf~~l~~~p~i~~~~~~~~F~~~L 114 (303)
...+..++++-.+...-+.|...+ |.++..|++..+.=+. +.+...- .+| ++.....+|.+.+
T Consensus 32 ~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~-~~~--~~~p~L~~w~~ri 97 (99)
T PF14497_consen 32 SGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA-DFP--KDYPNLVRWYERI 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC-HHT--TTCHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc-ccc--cccHHHHHHHHhh
Confidence 578889999999999999999988 9999999999886442 3333322 223 3444555555544
No 99
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.78 E-value=5e+02 Score=28.00 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhhhhhHhhhHh--hhhhhcCCCCCCCcceEecCCCCHHHHHHHH-HHHHHHHHHhhcCCCCceEEe
Q 022051 147 DLDEIHQFLDRFYMSRIGIRMLIG--QHVELHNPNPPPHCIGYIDTKMSPVQVARNA-SEHARCVCLREYGSAPDFNIY 222 (303)
Q Consensus 147 ~~~~i~~FLD~f~~sRIsiRlL~~--qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a-~~~a~~lC~~~yg~~P~v~i~ 222 (303)
+...++.-|-..++.||++|-+.. .-++=+.+. .+ ++..+++.. ...++.+|.++.+.-.++++.
T Consensus 532 s~s~iqkVLq~LL~E~VsIRdl~tIlEtlad~a~~--~k---------d~~~L~e~VR~~L~r~I~~~~~~~~~~L~Vi 599 (696)
T COG1298 532 SLSTLQKVLQNLLKERVSIRDLPTILETLADYAPI--TK---------DPDELTEKVRQALGRQITQQLLDENGELEVI 599 (696)
T ss_pred CHHHHHHHHHHHHhcCCccccHHHHHHHHHHhccc--CC---------CHHHHHHHHHHHHHHHHHHHhhCcCCeEEEE
Confidence 356899999999999999998743 222222221 11 555555443 334679999999887777764
No 100
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=31.30 E-value=91 Score=31.65 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCC--CCCCCCeEEEEecCCCeEEEEEeecCcc
Q 022051 242 ELVKNSLRAVEERYMDS--DKVAPPIRIIVADGLEDVTIKVLLLFMI 286 (303)
Q Consensus 242 ELlKNAmRAtvE~h~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~ 286 (303)
+++|-=+-|.--=|... ..++-|=.|.+...++|+.+||+|+|+-
T Consensus 280 ~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlA 326 (475)
T KOG0615|consen 280 LLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLA 326 (475)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchh
Confidence 45555555654445321 2458899999999999999999999974
No 101
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=31.27 E-value=2.6e+02 Score=30.81 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=60.8
Q ss_pred cCCCCHHHHHHHHHHHHH--HHHHhhcCCCCceEE-ec-CCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCC------
Q 022051 189 DTKMSPVQVARNASEHAR--CVCLREYGSAPDFNI-YG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDS------ 258 (303)
Q Consensus 189 ~~~~~~~~vv~~a~~~a~--~lC~~~yg~~P~v~i-~g-~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~------ 258 (303)
.+.+-+..++..+.+.|+ --|.+.-..-|.|.= .| ++|-.|.|| ..||.+-++.+-||.++.+
T Consensus 533 ~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YI-------alELC~~sL~dlie~~~~d~~~~~~ 605 (903)
T KOG1027|consen 533 GREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYI-------ALELCACSLQDLIESSGLDVEMQSD 605 (903)
T ss_pred CceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEE-------EehHhhhhHHHHHhccccchhhccc
Confidence 456778888888888886 334455567787653 33 467777776 4577777777777664110
Q ss_pred -----------------------CCCCCCeEEEEec--CCCeEEEEEeecCc
Q 022051 259 -----------------------DKVAPPIRIIVAD--GLEDVTIKVLLLFM 285 (303)
Q Consensus 259 -----------------------~~~lPPI~V~I~~--g~edvtIkISD~g~ 285 (303)
-.+|-|=.|.|.. ++..+..+|||+|+
T Consensus 606 i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfgl 657 (903)
T KOG1027|consen 606 IDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGL 657 (903)
T ss_pred ccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEeccccc
Confidence 1246777777765 47889999999995
No 102
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=30.17 E-value=48 Score=35.13 Aligned_cols=39 Identities=36% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 239 Il~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
++-||+-||+-|-. --|.|.|-.|.-. .|+|+|+|-|.-
T Consensus 27 VVKELVENSlDAGA----------t~I~I~ve~gG~~-~I~V~DNG~Gi~ 65 (638)
T COG0323 27 VVKELVENSLDAGA----------TRIDIEVEGGGLK-LIRVRDNGSGID 65 (638)
T ss_pred HHHHHHhcccccCC----------CEEEEEEccCCcc-EEEEEECCCCCC
Confidence 67889888887621 1377877666543 388999999963
No 103
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=29.29 E-value=59 Score=31.80 Aligned_cols=126 Identities=15% Similarity=0.270 Sum_probs=70.9
Q ss_pred cccCCc--hHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHhhhcCCcccCCChH
Q 022051 74 GLSEKP--AVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH-N-NVVPMMALGLQQLKKEMDPKIVYEDLD 149 (303)
Q Consensus 74 ~l~~nP--~i~~V~~~Y~~Sf~~l~~~p~i~~~~~~~~F~~~L~~i~~~H-~-~vi~~lA~G~~E~k~~~~~~~~~~~~~ 149 (303)
.+++.| .+..+-+||.+.+ .+-.|+...+.+--.+|+. |+.++-.. . .+...+++++-- ....+
T Consensus 182 ~vgn~p~~em~sa~~wy~~~l-~Fhrfwsvdd~~v~te~Sa-Lrs~vlan~~esi~mpinEp~~G----------~k~ks 249 (381)
T KOG0638|consen 182 VVGNQPDGEMESALRWYEKCL-GFHRFWSVDDSQVHTEYSA-LRSIVLANYEESIKMPINEPAPG----------KKKKS 249 (381)
T ss_pred hhccCCcccchHHHHHHHHhh-cccccccCCcchhhhHHHH-HHHHHHhcCCccEEEeccCCCCC----------CccHH
Confidence 345556 6677888998764 3444555444444445655 44443222 1 121112221111 11236
Q ss_pred HHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCcee
Q 022051 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTF 229 (303)
Q Consensus 150 ~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f 229 (303)
+|++|+|.+=-+-. ||+||... +||+ |++..+. -...|
T Consensus 250 QIqeyv~y~gG~Gv-------QHiaL~te-----------------dIi~-Ai~~lr~-----------------rG~eF 287 (381)
T KOG0638|consen 250 QIQEYVEYHGGAGV-------QHIALNTE-----------------DIIE-AIRGLRA-----------------RGGEF 287 (381)
T ss_pred HHHHHHHhcCCCce-------eeeeecch-----------------HHHH-HHHHHHh-----------------cCCcc
Confidence 99999997654443 67766533 4443 3332222 13578
Q ss_pred eecCchHHHHHHHHHHHHHHHHHH
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEE 253 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE 253 (303)
.-+|+--|..+-|=++-|-+++=|
T Consensus 288 Ls~Ps~YYqnl~erl~~~~~~vke 311 (381)
T KOG0638|consen 288 LSPPSTYYQNLKERLSTSIRKVKE 311 (381)
T ss_pred ccCCHHHHHhHHHHhhhhhhhhhc
Confidence 889999999999999988887654
No 104
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=28.49 E-value=1.5e+02 Score=19.96 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=16.2
Q ss_pred HHHHhcCCcHHHHHHHHHHHhhhcC
Q 022051 116 AIKVRHNNVVPMMALGLQQLKKEMD 140 (303)
Q Consensus 116 ~i~~~H~~vi~~lA~G~~E~k~~~~ 140 (303)
+-+++ .+.+.|.+|+.|+-+.-+
T Consensus 4 ~YL~~--~v~p~L~~gL~~l~~~rP 26 (42)
T PF05186_consen 4 QYLKE--TVGPVLTEGLAELAKERP 26 (42)
T ss_dssp HHHHH--HTHHHHHHHHHHHHHH--
T ss_pred HHHHH--HhHHHHHHHHHHHHHHCC
Confidence 33444 389999999999987654
No 105
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=24.30 E-value=1.3e+02 Score=30.50 Aligned_cols=36 Identities=22% Similarity=0.579 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhc
Q 022051 81 VLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121 (303)
Q Consensus 81 i~~V~~~Y~~Sf~~l~~~p~i~~~~~~~~F~~~L~~i~~~H 121 (303)
--+|++||-.-|-+|.+. ..||..|+++.+-+.++-
T Consensus 187 aMRirEwYswhFPEL~ki-----v~DNy~ya~~~~~i~dk~ 222 (498)
T KOG2573|consen 187 AMRIREWYSWHFPELVKI-----VPDNYKYAKVVKFIVDKE 222 (498)
T ss_pred HHHHHHHHhhccHHHHHh-----ccchHHHHHHHHHHhchh
Confidence 357899999999888774 456777888877776654
No 106
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=23.77 E-value=1e+02 Score=24.24 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHH
Q 022051 147 DLDEIHQFLDRFY 159 (303)
Q Consensus 147 ~~~~i~~FLD~f~ 159 (303)
+.+++++||++|-
T Consensus 63 t~EevDdfL~~y~ 75 (85)
T PF12091_consen 63 TQEEVDDFLGGYD 75 (85)
T ss_pred CHHHHHHHHHHHH
Confidence 4679999999985
No 107
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=23.77 E-value=79 Score=34.49 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=37.9
Q ss_pred eecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
+|+|. ||+|.-|++-||-- +++- +++--|+|+|-. |+=.|-|+++|.|.+.
T Consensus 49 t~~pG-l~ki~dEilvNaad--k~rd----~~m~~i~v~i~~--e~~~isv~nnGkGIPv 99 (842)
T KOG0355|consen 49 TYVPG-LYKIFDEILVNAAD--KQRD----PKMNTIKVTIDK--EKNEISVYNNGKGIPV 99 (842)
T ss_pred ecCCc-HHHHHHHHhhcccc--cccC----CCcceeEEEEcc--CCCEEEEEeCCCccee
Confidence 78886 89999999999977 3322 346678888855 4455667999988763
No 108
>COG3445 Acid-induced glycyl radical enzyme [General function prediction only]
Probab=20.85 E-value=1.6e+02 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 215 SAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 215 ~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+|+|.|+|++.+..--+. |-|.|..-..+.+.|...|.++
T Consensus 61 v~p~vrveggqhlnvnvl~---------------retledav~~pekypqltirvs 101 (127)
T COG3445 61 VKPEVRVEGGQHLNVNVLR---------------RETLEDAVKHPEKYPQLTIRVS 101 (127)
T ss_pred cCceeEeccCceeeeeeee---------------hhhHHHHhhCcccCCceEEEEe
Confidence 6799999998766654433 6777765555556787665554
No 109
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=20.58 E-value=97 Score=30.67 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=23.0
Q ss_pred HHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCc
Q 022051 250 AVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFM 285 (303)
Q Consensus 250 AtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~ 285 (303)
|..++|+---.+.-|..+.| ..+--..||||+|-
T Consensus 139 ~yLh~~~IcHRDIKPqNlLv--D~~tg~LKicDFGS 172 (364)
T KOG0658|consen 139 AYLHSHGICHRDIKPQNLLV--DPDTGVLKICDFGS 172 (364)
T ss_pred HHHHhcCcccCCCChheEEE--cCCCCeEEeccCCc
Confidence 34555443334578888888 45566899999994
No 110
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=2.1e+02 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=34.5
Q ss_pred eecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeec
Q 022051 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLL 283 (303)
Q Consensus 230 ~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~ 283 (303)
-=|..-+-|+.-||+.||.+... .-||.|+.+--++-+..|+|..
T Consensus 58 ~evrhsvgYl~NELiENAVKfra---------~geIvieasl~s~~f~~kvsN~ 102 (184)
T COG5381 58 DEVRHSVGYLANELIENAVKFRA---------TGEIVIEASLYSHKFIFKVSNI 102 (184)
T ss_pred HHHhhhHHHHHHHHHHhhhcccC---------CCcEEEEEEeccceEEEEeccc
Confidence 34566688999999999986521 1279999998899999997754
Done!