Query 022051
Match_columns 303
No_of_seqs 111 out of 414
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 13:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gkz_A [3-methyl-2-oxobutanoat 100.0 7.5E-46 2.6E-50 356.1 24.0 265 16-288 27-291 (388)
2 2e0a_A Pyruvate dehydrogenase 100.0 1.1E-42 3.8E-47 335.3 28.6 269 14-288 3-282 (394)
3 2q8g_A [pyruvate dehydrogenase 100.0 3.7E-42 1.3E-46 333.0 27.2 277 6-288 5-295 (407)
4 2btz_A Pyruvate dehydrogenase 100.0 1.9E-41 6.6E-46 326.4 26.0 270 13-288 2-283 (394)
5 1y8o_A [pyruvate dehydrogenase 100.0 5.2E-41 1.8E-45 326.7 25.3 279 5-288 16-306 (419)
6 1i58_A Chemotaxis protein CHEA 97.8 4.4E-05 1.5E-09 64.4 6.9 96 192-288 5-104 (189)
7 1ysr_A Sensor-type histidine k 97.7 7.1E-05 2.4E-09 60.5 7.6 83 191-287 7-89 (150)
8 3a0y_A Sensor protein; ATP-LID 97.7 0.00024 8.2E-09 57.0 10.0 87 191-288 5-92 (152)
9 1id0_A PHOQ histidine kinase; 97.7 7.7E-05 2.6E-09 60.2 7.0 83 192-287 4-86 (152)
10 4ew8_A Sensor protein DIVL; si 97.6 0.0015 5.3E-08 57.3 14.5 87 191-288 113-200 (268)
11 2c2a_A Sensor histidine kinase 97.5 0.00073 2.5E-08 59.4 11.6 89 191-287 95-185 (258)
12 3zxq_A Hypoxia sensor histidin 97.5 0.00014 4.7E-09 57.0 5.8 74 211-294 15-88 (124)
13 3a0r_A Sensor protein; four he 97.5 0.0013 4.3E-08 59.8 12.4 88 190-288 201-289 (349)
14 3zxo_A Redox sensor histidine 97.4 8.1E-05 2.8E-09 58.6 3.7 88 192-294 5-92 (129)
15 3d36_A Sporulation kinase B; G 97.4 0.00079 2.7E-08 58.0 9.9 123 148-288 46-168 (244)
16 3ehh_A Sensor kinase (YOCF pro 97.4 0.0027 9.3E-08 54.0 13.0 81 193-289 93-175 (218)
17 1bxd_A ENVZ(290-450), protein 97.4 0.00049 1.7E-08 56.2 7.9 80 191-287 9-89 (161)
18 3ehg_A Sensor kinase (YOCF pro 97.3 0.00045 1.5E-08 54.8 7.0 81 192-288 2-84 (128)
19 1r62_A Nitrogen regulation pro 97.3 0.0004 1.4E-08 56.0 6.0 87 191-288 7-104 (160)
20 3sl2_A Sensor histidine kinase 96.8 0.0081 2.8E-07 49.7 10.3 84 193-288 4-90 (177)
21 1b3q_A Protein (chemotaxis pro 96.3 0.0071 2.4E-07 57.5 7.2 94 194-288 66-163 (379)
22 3jz3_A Sensor protein QSEC; he 96.1 0.024 8.1E-07 47.8 9.1 83 191-288 75-158 (222)
23 1th8_A Anti-sigma F factor; SP 96.0 0.0044 1.5E-07 49.8 3.4 51 233-288 37-87 (145)
24 1mu5_A Type II DNA topoisomera 95.3 0.009 3.1E-07 59.0 3.5 51 233-288 30-83 (471)
25 3fv5_A DNA topoisomerase 4 sub 95.2 0.014 4.9E-07 51.1 4.1 44 237-289 19-62 (201)
26 2zbk_B Type 2 DNA topoisomeras 95.1 0.014 4.7E-07 58.5 4.1 49 234-287 30-81 (530)
27 4duh_A DNA gyrase subunit B; s 95.0 0.021 7.1E-07 50.9 4.6 47 234-289 34-80 (220)
28 3ttz_A DNA gyrase subunit B; p 94.9 0.022 7.5E-07 49.9 4.5 46 234-288 30-75 (198)
29 2wer_A ATP-dependent molecular 94.9 0.016 5.3E-07 51.3 3.4 50 238-287 29-84 (220)
30 2q2e_B Type 2 DNA topoisomeras 94.6 0.027 9.2E-07 57.5 4.8 52 232-288 34-86 (621)
31 3cwv_A DNA gyrase, B subunit, 94.2 0.027 9.4E-07 53.8 3.6 47 234-289 29-75 (369)
32 3t0h_A Heat shock protein HSP 94.0 0.036 1.2E-06 49.6 3.8 51 237-287 34-90 (228)
33 1zxm_A TOPO IIA ATPase, DNA to 93.8 0.056 1.9E-06 52.3 5.0 53 228-288 46-98 (400)
34 1ei1_A DNA gyrase B, GYRB; ATP 93.7 0.046 1.6E-06 52.7 4.2 45 235-288 34-78 (391)
35 4emv_A DNA topoisomerase IV, B 93.6 0.055 1.9E-06 48.4 4.3 46 234-288 39-84 (226)
36 2gqp_A Endoplasmin; GRP94, HSP 93.4 0.1 3.4E-06 46.8 5.6 51 237-287 34-90 (236)
37 4fpp_A Phosphotransferase; fou 92.9 0.21 7.1E-06 44.0 6.9 49 231-287 142-190 (247)
38 2ior_A Chaperone protein HTPG; 92.9 0.081 2.8E-06 47.2 4.3 50 237-288 49-106 (235)
39 1qy5_A Endoplasmin; GRP94, NEC 92.9 0.13 4.4E-06 47.1 5.6 50 238-287 31-86 (269)
40 3o0i_A HSP90AA1 protein; HSP90 92.2 0.13 4.3E-06 47.0 4.6 51 237-287 62-118 (256)
41 1yc1_A HSP 86, heat shock prot 92.0 0.065 2.2E-06 48.9 2.4 51 237-287 70-126 (264)
42 3na3_A DNA mismatch repair pro 91.9 0.13 4.4E-06 48.9 4.4 43 235-288 28-70 (348)
43 1s16_A Topoisomerase IV subuni 91.9 0.11 3.9E-06 49.8 4.1 43 237-288 33-75 (390)
44 3nmq_A Heat shock protein HSP 91.8 0.17 5.8E-06 45.6 4.8 51 237-287 41-97 (239)
45 3h4l_A DNA mismatch repair pro 91.7 0.15 5.1E-06 48.7 4.6 43 235-288 25-67 (367)
46 1h7s_A PMS1 protein homolog 2; 91.6 0.14 4.9E-06 48.7 4.4 44 234-288 33-76 (365)
47 3peh_A Endoplasmin homolog; st 91.0 0.14 4.8E-06 47.3 3.6 51 237-287 48-104 (281)
48 3lnu_A Topoisomerase IV subuni 90.7 0.18 6.2E-06 48.9 4.1 44 237-289 52-95 (408)
49 1b63_A MUTL; DNA mismatch repa 90.3 0.16 5.4E-06 47.6 3.3 43 235-288 24-66 (333)
50 1kij_A DNA gyrase subunit B; t 90.3 0.21 7.3E-06 47.9 4.3 46 234-288 31-76 (390)
51 1pvg_A DNA topoisomerase II; G 90.0 0.37 1.3E-05 46.7 5.8 53 228-288 58-110 (418)
52 1y4s_A Chaperone protein HTPG; 86.9 0.88 3E-05 45.7 6.2 50 237-288 29-86 (559)
53 3ke6_A Protein RV1364C/MT1410; 85.0 2 6.7E-05 40.7 7.4 50 235-289 297-347 (399)
54 2ioq_A Chaperone protein HTPG; 84.9 1 3.5E-05 45.9 5.5 49 237-287 29-85 (624)
55 2o1u_A Endoplasmin; GRP94, HSP 83.7 0.96 3.3E-05 46.4 4.8 51 237-287 47-103 (666)
56 1ixm_A SPO0B, protein (sporula 82.7 3 0.0001 35.9 7.0 138 104-287 15-157 (192)
57 2cg9_A ATP-dependent molecular 82.1 1 3.5E-05 46.3 4.3 52 237-288 28-85 (677)
58 4gfh_A DNA topoisomerase 2; to 73.3 2.4 8.3E-05 46.2 4.2 55 227-289 52-106 (1177)
59 3ied_A Heat shock protein; HSP 69.6 2 6.7E-05 39.4 2.1 25 263-287 117-141 (272)
60 1rkl_A Dolichyl-diphosphooligo 67.1 2.2 7.6E-05 27.3 1.3 20 280-299 2-21 (36)
61 2lat_A Dolichyl-diphosphooligo 58.7 2.2 7.6E-05 27.4 0.2 21 280-300 2-22 (37)
62 2jvw_A Uncharacterized protein 27.0 1.3E+02 0.0046 22.6 5.5 48 23-94 9-75 (88)
63 4eve_A Neutrophil-activating p 24.2 91 0.0031 25.5 4.7 66 58-138 71-136 (164)
64 3kwo_A Putative bacterioferrit 21.9 1.1E+02 0.0039 24.4 4.8 66 58-138 54-119 (152)
65 3g36_A Protein DPY-30 homolog; 21.6 90 0.0031 21.4 3.5 23 116-140 11-33 (55)
66 3iq1_A DPS family protein; csg 21.5 1.2E+02 0.004 24.5 4.8 65 58-138 67-131 (159)
67 2nsz_A Programmed cell death p 21.1 2.4E+02 0.0082 22.0 6.5 54 80-140 39-92 (129)
No 1
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=7.5e-46 Score=356.10 Aligned_cols=265 Identities=30% Similarity=0.541 Sum_probs=240.7
Q ss_pred HHHHHhhCCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHHHHh
Q 022051 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDL 95 (303)
Q Consensus 16 ~~I~~ya~~~~~plSL~~Ll~fG~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf~~l 95 (303)
..|++||+++++|+||+||++||++++..+++++++|+++|||+|+|+|+++++.||+++..||++.++++||.++|+++
T Consensus 27 ~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~l 106 (388)
T 1gkz_A 27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKL 106 (388)
T ss_dssp -----------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHhhhhhh
Q 022051 96 RSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL 175 (303)
Q Consensus 96 ~~~p~i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~qHlaL 175 (303)
+.++.+++.+++.+|+++++.+..+|.+.+..|+.|+.|+.+... +.+.+++|||+++.+++++|.|+++|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~l 180 (388)
T 1gkz_A 107 TDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE------DEKLVRYFLDKTLTSRLGIRMLATHHLAL 180 (388)
T ss_dssp HHSCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCC------STTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcCCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987543 23579999999999999999999999999
Q ss_pred cCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHh
Q 022051 176 HNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255 (303)
Q Consensus 176 ~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h 255 (303)
+.. .++.+|++...|++.++++++++.++..|..+||..|++++.++.+..++++|.||++|+.+|++||+|||.+.+
T Consensus 181 ~~~--~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~ 258 (388)
T 1gkz_A 181 HED--KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH 258 (388)
T ss_dssp TSC--CTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcc--CCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCCceeecHHHHHHHHHHHHHHHHHHhhccc
Confidence 866 367899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 256 MDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 256 ~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.......|+|+|++..++++++|+|+|+|.|..
T Consensus 259 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~ 291 (388)
T 1gkz_A 259 LDTPYNVPDVVITIANNDVDLIIRISDRGGGIA 291 (388)
T ss_dssp TTCTTSCCCEEEEEEECSSEEEEEEECCSCCCC
T ss_pred cCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcC
Confidence 655566899999999999999999999999963
No 2
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=1.1e-42 Score=335.30 Aligned_cols=269 Identities=34% Similarity=0.553 Sum_probs=238.1
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHH
Q 022051 14 LIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF 92 (303)
Q Consensus 14 l~~~I~~ya~~~~~plSL~~Ll~fG-~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf 92 (303)
+.+.|++||+++++|+||+||++|| +++++.+ |++|+++|||+|+|+|+++++.||+.+..+|++.+|++||.++|
T Consensus 3 ~~~~~~~~~~~~~~~~sl~~l~~fg~~~~~~~~---s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~l~~s~ 79 (394)
T 2e0a_A 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERT---SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSL 79 (394)
T ss_dssp CCHHHHHHTTSCCCCCBHHHHHHTTC---CHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcHHHHHHhCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhccHhhhcCchHHHHHHHHHHHH
Confidence 5678999999999999999999999 6778876 99999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC--CCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHh
Q 022051 93 RDLRSFPDI--RSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG 170 (303)
Q Consensus 93 ~~l~~~p~i--~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~ 170 (303)
++++..... ...++...|+....+++..|+++..+++.|+.|+.+....+ ....+++++|||+++.+|++.|||++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~--~~~~~~~~~~l~~~~i~~~~~rlli~ 157 (394)
T 2e0a_A 80 MDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVD--PVTNQNLQYFLDRFYMNRISTRMLMN 157 (394)
T ss_dssp HHHHTTSSSCTTCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCC--TTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccC--cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998763 33344458999999999999999999999999987754311 22356899999999999999999999
Q ss_pred hhhhhcCC--CCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec------CCCceeeecCchHHHHHHH
Q 022051 171 QHVELHNP--NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLMVFE 242 (303)
Q Consensus 171 qHlaL~~~--~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g------~~d~~f~yVPsHL~yIl~E 242 (303)
+|+.++.. ...+.++|+|+..|++.++++++++.++..|..+||..|.+++.. ..+..+.+.|.||++|+.+
T Consensus 158 ~lL~l~~~~~~~~~~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~N 237 (394)
T 2e0a_A 158 QHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFE 237 (394)
T ss_dssp HHHHHHCSSCCCCTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHH
Confidence 99986544 234668999999999999999999999999999999999999886 5678999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 243 LlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
|++||+|||.+.+... ...|+|+|++..++++++|+|+|+|.|..
T Consensus 238 Ll~NAik~~~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~ 282 (394)
T 2e0a_A 238 LFKNAMRATVEHQENQ-PSLTPIEVIVVLGKEDLTIKISDRGGGVP 282 (394)
T ss_dssp HHHHHHHHHHHHTTTS-SSCCCEEEEEEECSSEEEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccccc-CCCCCEEEEEEeCCCEEEEEEEeCCCCcC
Confidence 9999999999987554 45899999999999999999999999963
No 3
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=3.7e-42 Score=333.01 Aligned_cols=277 Identities=34% Similarity=0.523 Sum_probs=239.6
Q ss_pred hhhHhhHHHHHHHHHhhCCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHH
Q 022051 6 LSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKV 84 (303)
Q Consensus 6 ~~~~~~~~l~~~I~~ya~~~~~plSL~~Ll~fG-~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V 84 (303)
+...++.++.+.|++||+++++|+||+||++|| +++++++ |++|+++|||+|||+++++++.+|+++..+|++.+|
T Consensus 5 ~~~~~~~~~~~~i~~~~~~~~~~~sl~~~~~~g~~~~~~~~---s~~fl~~elPirla~~~~~i~~l~~~~~~~~~~~ev 81 (407)
T 2q8g_A 5 SSPASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKT---SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLV 81 (407)
T ss_dssp -------CHHHHHHHHHTSCCCCCBHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCCCCHhH---HHHHHHHHHHHHHHHHHHHHHhCchhhhcChhHHHH
Confidence 344556789999999999999999999999999 7788875 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhh
Q 022051 85 RDWYLDSFRDLRSFPDI--RSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSR 162 (303)
Q Consensus 85 ~~~Y~~Sf~~l~~~p~i--~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sR 162 (303)
++||.++|++++...+- .+.+...+|+..+.+++.+|+++..++++|+.|+.+....+ ..+.++++.|||+++.+|
T Consensus 82 ~~~l~~s~n~m~~~~~~~~~~~~~~~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~--~~~~~~~~~~l~~~~~~~ 159 (407)
T 2q8g_A 82 QSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVD--PVTSQNVQYFLDRFYMSR 159 (407)
T ss_dssp HHHHHHHHHHHHTTSSSCTTCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--C--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhcCccchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccC--ccCHHHHHHHHHHHHHHH
Confidence 99999999999998653 33344468999999999999999999999999988764311 112457899999999999
Q ss_pred hhHhhhHhhhhhhcCCCC-----CCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec------CCCceeee
Q 022051 163 IGIRMLIGQHVELHNPNP-----PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPY 231 (303)
Q Consensus 163 IsiRlL~~qHlaL~~~~~-----~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g------~~d~~f~y 231 (303)
++.|||+++|+.++.... .++++|.....|++.++++++++.++..|..+||.+|.+++.. ..+..+.+
T Consensus 160 ~~~rlli~~ll~l~~~e~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~ 239 (407)
T 2q8g_A 160 ISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVY 239 (407)
T ss_dssp HHHHHHHHHHHHHHC----------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhccccccCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEE
Confidence 999999999999987631 2458899999999999999999999999999999999999885 66789999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 232 VPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.|.||++|+.+|++||+|||.+.+++. ...|+|+|++..++++++|+|+|+|.|..
T Consensus 240 d~~~L~~il~NLl~NAik~t~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~ 295 (407)
T 2q8g_A 240 VPSHLYHMVFELFKNAMRATMEHHANR-GVYPPIQVHVTLGNEDLTVKMSDRGGGVP 295 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCCEEEEEEECSSEEEEEEEECSCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccC-CCCCCEEEEEEeCCCEEEEEEEecCCCCC
Confidence 999999999999999999999987655 45899999999999999999999999863
No 4
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.9e-41 Score=326.39 Aligned_cols=270 Identities=35% Similarity=0.553 Sum_probs=237.0
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHHHHHHHHHH
Q 022051 13 SLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDS 91 (303)
Q Consensus 13 ~l~~~I~~ya~~~~~plSL~~Ll~fG-~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~S 91 (303)
.+.+.|++|+.++++|+|++||++|| +++++++ |++|+++|||+|+|+|+++++.||+.+..+|++.+|++||.++
T Consensus 2 ~~~~~~~~~~~~~~~~~sl~~~~~fg~~~~~~~~---s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~~~~~ 78 (394)
T 2btz_A 2 SAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKT---SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQS 78 (394)
T ss_dssp CHHHHHHHHTTSCCCCCBHHHHHHHHSSSCCHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHHSHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCCCCcCHHHHHHhcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhCChhhhcCccHHHHHHHHHHH
Confidence 36788999999999999999999999 7777765 8999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCC--CchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhH
Q 022051 92 FRDLRSFPDIR--STSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLI 169 (303)
Q Consensus 92 f~~l~~~p~i~--~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~ 169 (303)
|++++.+.... ..+....|+.+..+++..|+++..+++.|+.|+.+....+ ....+++++|||+++.+|++.|||+
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~--~~~~~~~~~~l~~~~i~~~~~rlli 156 (394)
T 2btz_A 79 LLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDD--PVSNQNIQYFLDRFYLSRISIRMLI 156 (394)
T ss_dssp HHHHHTTTTCCTTSTTTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCccchHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999987642 2223358999999999999999999999999987653211 1124578999999999999999999
Q ss_pred hhhhhhcCC---CCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec------CCCceeeecCchHHHHH
Q 022051 170 GQHVELHNP---NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLMV 240 (303)
Q Consensus 170 ~qHlaL~~~---~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g------~~d~~f~yVPsHL~yIl 240 (303)
++|+.++.. ...+..+|+|+..|++.++++++++.++..|..+||.+|.+++.. ..+..+.+.|.||++|+
T Consensus 157 ~~ll~l~~~~~~~~~~~~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il 236 (394)
T 2btz_A 157 NQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHML 236 (394)
T ss_dssp HHHHHHCC--------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHH
T ss_pred HHHHHHhcccccCCCCcccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHH
Confidence 999998876 234668899999999999999999999999999999999999875 67899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 241 ~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.+|++||+|||.+.+... ...|+|+|++..++++++|+|+|+|.|..
T Consensus 237 ~NLl~NAik~~~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~ 283 (394)
T 2btz_A 237 FELFKNAMRATVESHESS-LILPPIKVMVALGEEDLSIKMSDRGGGVP 283 (394)
T ss_dssp HHHHHHHHHHHHHTTTTC-SCCCCEEEEEEECSSEEEEEEEECSCCCC
T ss_pred HHHHHHHHHHhhhccccC-CCCCCEEEEEEeCCCEEEEEEEeCCCCCC
Confidence 999999999999876544 45899999999999999999999999963
No 5
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=5.2e-41 Score=326.66 Aligned_cols=279 Identities=34% Similarity=0.531 Sum_probs=240.6
Q ss_pred hhhhHhhHHHHHHHHHhhCCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHH
Q 022051 5 KLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLK 83 (303)
Q Consensus 5 ~~~~~~~~~l~~~I~~ya~~~~~plSL~~Ll~fG-~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~ 83 (303)
.+.|+++.++.+.|++|+.++++|+|++||++|| ..+++. .|++|+++|||+|||+++++++.+|+.+..+|++..
T Consensus 16 ~~~~~~~~~~~~~i~~y~~~~~~~~sl~~l~~~g~~~~~~~---~s~~~l~~elPirLa~~~~~i~~~~~~~~~~~~~~~ 92 (419)
T 1y8o_A 16 NLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEK---TSYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGL 92 (419)
T ss_dssp ----------CHHHHHHHHSCCCCCBHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHH
T ss_pred cccchhHHHHHHHHHHHhcCCCCCCCHHHHHHhcCCCCCHH---HHHHHHHHHhHHHHHHHHHHHHhCCHhhhcChhHHH
Confidence 4569999999999999999999999999999999 667764 499999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhh
Q 022051 84 VRDWYLDSFRDLRSFPDI--RSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMS 161 (303)
Q Consensus 84 V~~~Y~~Sf~~l~~~p~i--~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~s 161 (303)
+.++|.++|++++..... ...++..+|+..+.+++..++++++++++|..|+.+..+.+ ....+++++|||+++.+
T Consensus 93 e~~~l~~sf~~m~~~~~~~~~~~~~~~~f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~--~~~~~~~~~~l~~i~~~ 170 (419)
T 1y8o_A 93 VQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFD--PFISTNIQYFLDRFYTN 170 (419)
T ss_dssp HHHHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhccC--cccHHHHHHHHHHHHHH
Confidence 999999999999998653 33344568999999999999999999999999988765311 11245899999999999
Q ss_pred hhhHhhhHhhhhhhcCC---CCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec------CCCceeeec
Q 022051 162 RIGIRMLIGQHVELHNP---NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYV 232 (303)
Q Consensus 162 RIsiRlL~~qHlaL~~~---~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g------~~d~~f~yV 232 (303)
|++.|+|+++++.++.. ...+.++|+++..|++.++++++++.++.+|..+||.+|++.|.. ..+..+.+.
T Consensus 171 ~~~~rlli~~lL~l~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d 250 (419)
T 1y8o_A 171 RISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYV 250 (419)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCSSTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEc
Confidence 99999999999988765 234678999999999999999999999999999999999999885 678999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
|.+|++|+.+|++||++||.+.+.+.+...|+|+|++..++++++|+|+|+|.|..
T Consensus 251 ~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~ 306 (419)
T 1y8o_A 251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVP 306 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCC
Confidence 99999999999999999999988665555789999999999999999999999963
No 6
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.77 E-value=4.4e-05 Score=64.42 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCeEE
Q 022051 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYM----DSDKVAPPIRI 267 (303)
Q Consensus 192 ~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~----~~~~~lPPI~V 267 (303)
+++.++++.+.+..+..+.. +|....+.+.+.........+..+.+++.+|+.||+++..+... .....-..|.|
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I 83 (189)
T 1i58_A 5 VPISFVFNRFPRMVRDLAKK-MNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLIL 83 (189)
T ss_dssp EETHHHHTTHHHHHHHHHHH-TTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEE
T ss_pred ecHHHHHHHHHHHHHHHHHH-hCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEE
Confidence 46778888888888888776 36555666665543333455566777799999999999754210 00012356899
Q ss_pred EEecCCCeEEEEEeecCcchh
Q 022051 268 IVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 268 ~I~~g~edvtIkISD~g~~~~ 288 (303)
.+...++.+.|.|+|.|.|..
T Consensus 84 ~~~~~~~~~~i~V~D~G~Gi~ 104 (189)
T 1i58_A 84 SARHEGNNVVIEVEDDGRGID 104 (189)
T ss_dssp EEEEETTEEEEEEEECSSCCC
T ss_pred EEEecCCEEEEEEEeCCCCcC
Confidence 998888999999999999964
No 7
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.74 E-value=7.1e-05 Score=60.52 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
.+++.++++++.+..+... ..-.+.+....+..+..-|..|..++.+|+.||++++ .. ..|.|.+.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~d~~~l~~il~nLl~NA~~~~-----~~----~~I~i~~~ 72 (150)
T 1ysr_A 7 PVDITDLLDRAAHDAARIY-----PDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHG-----GA----TLVQLSAV 72 (150)
T ss_dssp EEEHHHHHHHHHHHHHHHS-----TTCEEEECSCCCCEEEECHHHHHHHHHHHHHHHHHTT-----CC----SEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHhc-----cCCceEEccCCCceEecCHHHHHHHHHHHHHHHHhcC-----CC----cEEEEEEE
Confidence 4578888888888765432 2335666666667777779999999999999999973 21 26888888
Q ss_pred cCCCeEEEEEeecCcch
Q 022051 271 DGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 271 ~g~edvtIkISD~g~~~ 287 (303)
..++.+.|.|+|.|.|.
T Consensus 73 ~~~~~~~i~v~D~G~gi 89 (150)
T 1ysr_A 73 SSRAGVEIAIDDNGSGV 89 (150)
T ss_dssp EETTEEEEEEEESSSCC
T ss_pred ecCCEEEEEEEECCCCC
Confidence 88899999999999885
No 8
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.70 E-value=0.00024 Score=56.99 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecC-CCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~-~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++.+..+..+... | -++.++.. .+..+..=+..|..++.+|+.||++++- . -..|.|.+
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~-~--i~~~~~~~~~~~~i~~d~~~l~~il~nll~NAi~~~~-----~---~~~I~i~~ 73 (152)
T 3a0y_A 5 EFNLNELIREVYVLFEEKIRKM-N--IDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATG-----E---NGKIKITS 73 (152)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHT-T--CEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHC-----T---TCEEEEEE
T ss_pred EecHHHHHHHHHHHHHHHHHHc-C--cEEEEecCCCCcEEEECHHHHHHHHHHHHHHHHHhcC-----C---CCEEEEEE
Confidence 3578889999988887776544 2 23444332 3556666678899999999999999861 1 13689999
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++.+.|.|+|.|.|..
T Consensus 74 ~~~~~~~~i~i~D~G~g~~ 92 (152)
T 3a0y_A 74 EDMYTKVRVSVWNSGPPIP 92 (152)
T ss_dssp EECSSEEEEEEEEESCCCC
T ss_pred EecCCEEEEEEEeCCCCcC
Confidence 9889999999999998853
No 9
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.69 E-value=7.7e-05 Score=60.19 Aligned_cols=83 Identities=12% Similarity=-0.012 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec
Q 022051 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD 271 (303)
Q Consensus 192 ~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~ 271 (303)
+++.++++++.+..+..+.. ..-.++++.+.+..+..-+..|..++.+|+.||++++- +.|.|.+..
T Consensus 4 ~~l~~~l~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~----------~~i~i~~~~ 70 (152)
T 1id0_A 4 HPVAPLLDNLTSALNKVYQR---KGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCL----------EFVEISARQ 70 (152)
T ss_dssp EEHHHHHHHHHHHHHHHTTT---TTCEEEEECCTTCEEESCHHHHHHHHHHHHHHHHHHCS----------SEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHh---CCcEEEEEcCCCceEeeCHHHHHHHHHHHHHHHHHhCc----------CeEEEEEEe
Confidence 57788888888877665432 22345555666667777888999999999999999841 168888888
Q ss_pred CCCeEEEEEeecCcch
Q 022051 272 GLEDVTIKVLLLFMIC 287 (303)
Q Consensus 272 g~edvtIkISD~g~~~ 287 (303)
.++.+.|.|+|.|.|.
T Consensus 71 ~~~~~~i~i~D~G~gi 86 (152)
T 1id0_A 71 TDEHLYIVVEDDGPGI 86 (152)
T ss_dssp CSSCEEEEEEESSSCC
T ss_pred cCCEEEEEEEeCCCCc
Confidence 8899999999999885
No 10
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.59 E-value=0.0015 Score=57.31 Aligned_cols=87 Identities=15% Similarity=0.039 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc-eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~-~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++.+.....+... .-.+.+....+. .+..-+..|..++.+|+.||++++ .. -..|.|.+
T Consensus 113 ~~~l~~~l~~~~~~~~~~~~~~---~i~i~~~~~~~~~~v~~d~~~l~~il~nLl~NA~~~~-----~~---~~~I~i~~ 181 (268)
T 4ew8_A 113 DIRVSDLLLNAQERALKDAQLG---GVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQT-----PP---GGRVTLSA 181 (268)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHT---TCEEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHS-----CT---TCEEEEEE
T ss_pred eccHHHHHHHHHHHHHhhhhcc---CceEEEEcCCCCceEecCHHHHHHHHHHHHHHHHHhC-----CC---CCEEEEEE
Confidence 3578888888888777665443 234555555544 455667789999999999999975 21 13699999
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++.+.|.|+|.|.|.-
T Consensus 182 ~~~~~~~~i~V~D~G~Gi~ 200 (268)
T 4ew8_A 182 RRALGEVRLDVSDTGRGVP 200 (268)
T ss_dssp EECSSEEEEEEEESSCCCC
T ss_pred EecCCEEEEEEEcCCCCCC
Confidence 9999999999999999853
No 11
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.54 E-value=0.00073 Score=59.43 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEec--CCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYG--DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g--~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
.+++.++++++.+..+..+..+ | ..+.+.. ..+..+..=|..|..++..|+.||++|+- .+..-..|.|.
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~-~--i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~-----~~~~~~~i~i~ 166 (258)
T 2c2a_A 95 KVDLCDLVESAVNAIKEFASSH-N--VNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSK-----KDAPDKYVKVI 166 (258)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHT-T--CEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCC-----TTCTTCEEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHHc-C--cEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCc-----CCCCceeEEEE
Confidence 4588999999988877666544 2 2343432 23444445588999999999999998752 11112347888
Q ss_pred EecCCCeEEEEEeecCcch
Q 022051 269 VADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~ 287 (303)
+...++.+.|.|+|.|.|.
T Consensus 167 ~~~~~~~~~i~V~D~G~Gi 185 (258)
T 2c2a_A 167 LDEKDGGVLIIVEDNGIGI 185 (258)
T ss_dssp EEEETTEEEEEEEECSSCC
T ss_pred EecCCCeEEEEEEecCCCC
Confidence 8777889999999999985
No 12
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.50 E-value=0.00014 Score=57.01 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=50.9
Q ss_pred hhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhhh
Q 022051 211 REYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLCI 290 (303)
Q Consensus 211 ~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~~ 290 (303)
...|....+.+.++.+....-.+..|..++.|++.||++++ .. ..|.|.+...++ +.|.|+|.|.|..--
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~-----~~----~~i~i~~~~~~~-~~i~v~D~G~gi~~~ 84 (124)
T 3zxq_A 15 AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHA-----NA----TSLAINVSVEDD-VRVEVVDDGVGISGD 84 (124)
T ss_dssp TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCT-----TC----CEEEEEEEEEEE-EEEEEEECCCSSCGG
T ss_pred HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhC-----CC----CEEEEEEEeCCC-EEEEEEECCCCCCcc
Confidence 33444445555554443333447789999999999998764 21 358888887777 999999999987654
Q ss_pred HHHH
Q 022051 291 SFGI 294 (303)
Q Consensus 291 ~~~~ 294 (303)
.-|+
T Consensus 85 ~~Gl 88 (124)
T 3zxq_A 85 ITES 88 (124)
T ss_dssp GSHH
T ss_pred cccc
Confidence 3333
No 13
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.45 E-value=0.0013 Score=59.83 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecC-CCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 022051 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (303)
Q Consensus 190 ~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~-~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~ 268 (303)
..+++.++++++.+.....+..+ | ..+.+... .+..+..-|..|..++.+|+.||++|+ .. -..|.|.
T Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~-~--i~~~~~~~~~~~~~~~d~~~l~~vl~nLl~NA~k~~-----~~---~~~i~i~ 269 (349)
T 3a0r_A 201 TEFNLNELIREVYVLFEEKIRKM-N--IDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-----GE---NGKIKIT 269 (349)
T ss_dssp EEEEHHHHHHHHHHHHHHHHTTT-T--CCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTT-----CT---TCCEEEE
T ss_pred cccCHHHHHHHHHHHHHHHHHHc-C--cEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhc-----cC---CCEEEEE
Confidence 34678888888888776554322 2 33444433 344555667889999999999999985 11 2469999
Q ss_pred EecCCCeEEEEEeecCcchh
Q 022051 269 VADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 269 I~~g~edvtIkISD~g~~~~ 288 (303)
+...++.+.|.|+|.|.|..
T Consensus 270 ~~~~~~~~~i~v~D~G~Gi~ 289 (349)
T 3a0r_A 270 SEDMYTKVRVSVWNSGPPIP 289 (349)
T ss_dssp EEEETTEEEEEEEEESCCCC
T ss_pred EEecCCEEEEEEEECCCCCC
Confidence 99889999999999998864
No 14
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.44 E-value=8.1e-05 Score=58.63 Aligned_cols=88 Identities=17% Similarity=0.023 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEec
Q 022051 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD 271 (303)
Q Consensus 192 ~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~ 271 (303)
.++.+.+++..+.. ...|....+++.+.......-.+..|+.++.||+.||++++ . -.+|.|++..
T Consensus 5 ~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~-----~----~~~i~i~~~~ 70 (129)
T 3zxo_A 5 TRLRQRIDAAVAQF-----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHA-----A----ASTLTVRVKV 70 (129)
T ss_dssp CCHHHHHHHHHHHH-----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCS-----S----CCEEEEEEEE
T ss_pred ccHHHHHHHHHHHH-----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhC-----C----CceEEEEEEE
Confidence 45666666555544 33344444455554443233347799999999999999875 1 1369999988
Q ss_pred CCCeEEEEEeecCcchhhhHHHH
Q 022051 272 GLEDVTIKVLLLFMICLCISFGI 294 (303)
Q Consensus 272 g~edvtIkISD~g~~~~~~~~~~ 294 (303)
.++ +.|.|+|.|.|..--..|+
T Consensus 71 ~~~-~~i~v~D~G~gi~~~~~Gl 92 (129)
T 3zxo_A 71 DDD-LCIEVTDNGRGMPDEFTGS 92 (129)
T ss_dssp SSE-EEEEEEECCCCCTTTTCSH
T ss_pred cCC-EEEEEecCCCCCCcccCCc
Confidence 878 9999999998865433333
No 15
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.40 E-value=0.00079 Score=58.00 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCCcceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc
Q 022051 148 LDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF 227 (303)
Q Consensus 148 ~~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~ 227 (303)
.+....+++....+--.+.-++++.+.+.... .... ..+++..+++++.+..+..+... ...+.+... +.
T Consensus 46 ~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~--~~~~----~~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~-~~ 115 (244)
T 3d36_A 46 ADKRRQYARIAIEELDRAEAIITDYLTFAKPA--PETP----EKLNVKLEIERVIDILRPLANMS---CVDIQATLA-PF 115 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS--CCCC----EEEEHHHHHHHHHHHHHHHHTTT---TEEEEEECC-CC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCc----chhhHHHHHHHHHHHHHHHHHhc---CeEEeccCC-Cc
Confidence 34566777766555444555666666655432 1112 34578888888887776655322 123333332 35
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.+..-+..|..++.+|+.||++++- . -..|.|.+...++.+.|.|+|.|.|..
T Consensus 116 ~~~~d~~~l~~il~nLl~NA~~~~~-----~---~~~i~i~~~~~~~~~~i~i~D~G~gi~ 168 (244)
T 3d36_A 116 SVIGEREKFRQCLLNVMKNAIEAMP-----N---GGTLQVYVSIDNGRVLIRIADTGVGMT 168 (244)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTCT-----T---CEEEEEEEEEETTEEEEEEEECSSCCC
T ss_pred eEEeCHHHHHHHHHHHHHHHHHhcc-----C---CCeEEEEEEEeCCEEEEEEEecCCCCC
Confidence 5666778999999999999999852 1 135889998888999999999999853
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.39 E-value=0.0027 Score=54.03 Aligned_cols=81 Identities=15% Similarity=-0.027 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCceEEecC--CCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Q 022051 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (303)
Q Consensus 193 ~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~--~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~ 270 (303)
++.+.+....+.++ ..| ..+.+... ........+.+|+.++.|++.||++++ . -..|.|.+.
T Consensus 93 ~l~~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~-----~----~~~i~i~~~ 156 (218)
T 3ehh_A 93 RLKDELINIKQILE-----AAD--IMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHS-----Q----AKTCRVDIQ 156 (218)
T ss_dssp CHHHHHHHHHHHHH-----HTT--CEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHT-----C----CSEEEEEEE
T ss_pred CHHHHHHHHHHHHH-----hcC--CEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-----C----CCEEEEEEE
Confidence 55566655544442 223 33444332 222224456778899999999999875 2 136889998
Q ss_pred cCCCeEEEEEeecCcchhh
Q 022051 271 DGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 271 ~g~edvtIkISD~g~~~~~ 289 (303)
..++.+.|.|+|.|.|..-
T Consensus 157 ~~~~~~~i~V~D~G~Gi~~ 175 (218)
T 3ehh_A 157 QLWKEVVITVSDDGTFKGE 175 (218)
T ss_dssp EETTEEEEEEEESSCCCC-
T ss_pred EeCCEEEEEEEECCcCCCC
Confidence 8889999999999998753
No 17
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.38 E-value=0.00049 Score=56.24 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEe-cCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIY-GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~-g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++++... .....+++. ...+..+..-+..|..++.+|+.||++++ . ..|.|.+
T Consensus 9 ~~~l~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~v~~d~~~l~~il~nll~NAik~~------~----~~I~i~~ 71 (161)
T 1bxd_A 9 MADLNAVLGEVIAAES-------GYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG------N----GWIKVSS 71 (161)
T ss_dssp EECHHHHHHHHHHHHC-------SSSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC------C----SCEEEEE
T ss_pred ccCHHHHHHHHHHHhh-------hhcceEEEEecCCCceEEECHHHHHHHHHHHHHHHHhhc------C----CeEEEEE
Confidence 3578888887776632 233456665 33455666678899999999999999876 1 3699999
Q ss_pred ecCCCeEEEEEeecCcch
Q 022051 270 ADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~ 287 (303)
...++.+.|.|+|.|.|.
T Consensus 72 ~~~~~~~~i~i~D~G~gi 89 (161)
T 1bxd_A 72 GTEPNRAWFQVEDDGPGI 89 (161)
T ss_dssp EEETTEEEEEEEEESSCS
T ss_pred EEcCCEEEEEEEeCCCCC
Confidence 888899999999999885
No 18
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.34 E-value=0.00045 Score=54.81 Aligned_cols=81 Identities=14% Similarity=-0.025 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC--CceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDP--SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 192 ~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~--d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
+++.+.+....+.++. ...++.+.... .....-.+..|..++.|++.||++++ . -..|.|.+
T Consensus 2 v~l~~~l~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~-----~----~~~i~i~~ 65 (128)
T 3ehg_A 2 IRLKDELINIKQILEA-------ADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHS-----Q----AKTCRVDI 65 (128)
T ss_dssp CCHHHHHHHHHHHHHH-------TTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHT-----C----CSEEEEEE
T ss_pred ccHHHHHHHHHHHHHH-------cCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcC-----C----CcEEEEEE
Confidence 3555555555554432 22344444332 22223355778889999999999864 2 13689999
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++.+.|.|+|.|.|.-
T Consensus 66 ~~~~~~~~i~V~D~G~Gi~ 84 (128)
T 3ehg_A 66 QQLWKEVVITVSDDGTFKG 84 (128)
T ss_dssp EEETTEEEEEEEESSCCCS
T ss_pred EEeCCEEEEEEEECCcCcC
Confidence 8889999999999998864
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.26 E-value=0.0004 Score=56.02 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCc-eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~-~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++.+..+.. +...-.+.++...+. .+..-+..|..++.+|+.||++++-+. -..|.|.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nLl~NAik~~~~~-------~~~I~i~~ 75 (160)
T 1r62_A 7 TESIHKVAERVVTLVSME----LPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPE-------GGEIILRT 75 (160)
T ss_dssp EECHHHHHHHHHHHHTTT----CCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGG-------CEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhh----cccCcEEEEEcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhhcc-------CCeEEEEE
Confidence 347778887777665432 333334455544443 455567789999999999999997432 12478887
Q ss_pred ecCCC----------eEEEEEeecCcchh
Q 022051 270 ADGLE----------DVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~e----------dvtIkISD~g~~~~ 288 (303)
...++ .+.|.|+|.|.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~v~D~G~gi~ 104 (160)
T 1r62_A 76 RTAFQLTLHGERYRLAARIDVEDNGPGIP 104 (160)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEECTTC-
T ss_pred eccccccccccccccEEEEEEEeCCCCCC
Confidence 76655 89999999998853
No 20
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.83 E-value=0.0081 Score=49.71 Aligned_cols=84 Identities=8% Similarity=-0.037 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC-CceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE--
Q 022051 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV-- 269 (303)
Q Consensus 193 ~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~-d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I-- 269 (303)
++.++++.+++..+.. ....-.+.+.... +..+..-+..|..++.+|+.||++++ .. -..|+|.+
T Consensus 4 ~l~~~l~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~-----~~---~~~i~I~i~~ 71 (177)
T 3sl2_A 4 QIVRFMSLIIDRFEMT----KEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYS-----PE---GGHVTFSIDV 71 (177)
T ss_dssp EHHHHHHHHHHHHHTS----SCC--CEEEECCSSCCEEESCHHHHHHHHHHHHHHHHHTC-----CT---TCCEEEEEEE
T ss_pred eHHHHHHHHHHHHHHH----HhcCcEEEEecCCCCcEEEeCHHHHHHHHHHHHHHHHHhC-----CC---CCeEEEEEEE
Confidence 5566666666554432 3333455555443 44555567889999999999999975 11 12466666
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++.+.|.|+|.|.|..
T Consensus 72 ~~~~~~~~i~V~D~G~gi~ 90 (177)
T 3sl2_A 72 NEEEELLYISVKDEGIGIP 90 (177)
T ss_dssp ETTTTEEEEEEECCSSCCC
T ss_pred ccCCCEEEEEEEECCCCCC
Confidence 6778899999999998853
No 21
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.29 E-value=0.0071 Score=57.45 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEecCCCceeeecCchHHHHHHHHHHHHHHHHHHHh----cCCCCCCCCeEEEE
Q 022051 194 PVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY----MDSDKVAPPIRIIV 269 (303)
Q Consensus 194 ~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h----~~~~~~lPPI~V~I 269 (303)
+.+++++..+.++.++.. +|..-++.+.|.....-.-+...+..++.+|+.||+++++|.- ......-..|.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~~~~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 66 ISFVFNRFPRMVRDLAKK-MNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp THHHHTTHHHHHHHHHHH-TTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHH-hCCeEEEEEcCCCeeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 456677777777777755 4666666676653221222334555569999999999986531 11101223478888
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
...++.+.|.|+|.|.|.-
T Consensus 145 ~~~~~~v~i~V~D~G~Gi~ 163 (379)
T 1b3q_A 145 RHEGNNVVIEVEDDGRGID 163 (379)
T ss_dssp EEETTEEEEEEEECSCCCC
T ss_pred EEeCCEEEEEEEECCCCCC
Confidence 8888999999999999964
No 22
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=96.15 E-value=0.024 Score=47.81 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCceEEecCC-CceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Q 022051 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (303)
Q Consensus 191 ~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~g~~-d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I 269 (303)
.+++.++++++.+.....+... ...+.+.... ...+..-+..|..++.+|+.||++++ ..+ ..|.|.+
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~-----~~~---~~i~i~~ 143 (222)
T 3jz3_A 75 EIPLEDLLQSSVMDIYHTAQQA---KIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYS-----PQG---SVVDVTL 143 (222)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHT---TCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTC-----CTT---CEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHh---CCeEEEeeCCcceEEecCHHHHHHHHHHHHHHHHHcC-----CCC---CeEEEEE
Confidence 3478899999888877665443 2344444333 35555667789999999999999884 111 1255555
Q ss_pred ecCCCeEEEEEeecCcchh
Q 022051 270 ADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 270 ~~g~edvtIkISD~g~~~~ 288 (303)
. .++ |.|+|.|.|..
T Consensus 144 ~--~~~--i~V~D~G~Gi~ 158 (222)
T 3jz3_A 144 N--ADN--FIVRDNGPGVT 158 (222)
T ss_dssp C--SSE--EEEECSCC---
T ss_pred c--cCe--EEEEECCCCCC
Confidence 4 334 88999999863
No 23
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=95.96 E-value=0.0044 Score=49.83 Aligned_cols=51 Identities=16% Similarity=-0.097 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
...+..++.||+.||++++.+.. .-..|.|.+...++.+.|.|+|.|.|.-
T Consensus 37 ~~~l~~il~~l~~Nai~h~~~~~-----~~~~I~i~~~~~~~~~~i~V~D~G~g~~ 87 (145)
T 1th8_A 37 LTEIKTVVSEAVTNAIIHGYNND-----PNGIVSISVIIEDGVVHLTVRDEGVGIP 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTC-----TTSEEEEEEEEETTEEEEEEEECSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEEEeCCEEEEEEEECCCCcC
Confidence 35688899999999998754311 1346888888888999999999999865
No 24
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=95.32 E-value=0.009 Score=58.96 Aligned_cols=51 Identities=24% Similarity=0.138 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCC---CeEEEEEeecCcchh
Q 022051 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL---EDVTIKVLLLFMICL 288 (303)
Q Consensus 233 PsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~---edvtIkISD~g~~~~ 288 (303)
+..|.+++.||+.||++|+-+. ...|.|.|.+..++ +.+.|.|+|+|.|..
T Consensus 30 ~~~L~qvl~nLv~NAida~~~g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~ 83 (471)
T 1mu5_A 30 ARALYQTVRELIENSLDATDVH-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIP 83 (471)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGG-----TCCCEEEEEEEEEETTTTEEEEEEECCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-----CCceEEEEEEEECCCcCcEEEEEEEECCCCCC
Confidence 5789999999999999997532 22577999998754 789999999999863
No 25
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.19 E-value=0.014 Score=51.12 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
++++.||+.||+-|.+..+ ..-|+|+|..+. .|+|+|+|-|...
T Consensus 19 ~~~v~Elv~NsiDa~~~g~------a~~I~V~i~~~g---~i~V~DnG~GIp~ 62 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGH------AKRVDVILHADQ---SLEVIDDGRGMPV 62 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCC
T ss_pred hhhhHHHHHHHHHHHhcCC------CcEEEEEEeCCC---EEEEEECCCCcCc
Confidence 7899999999999977422 235999996542 8999999988653
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=95.09 E-value=0.014 Score=58.53 Aligned_cols=49 Identities=24% Similarity=0.156 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCC---CeEEEEEeecCcch
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL---EDVTIKVLLLFMIC 287 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~---edvtIkISD~g~~~ 287 (303)
..|++++.||+.||++|+-+ +...|.|.|++..++ +.+.|.|+|+|.|.
T Consensus 30 ~~L~qvl~NLV~NAida~~~-----gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI 81 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDV-----HGILPNIKITIDLIDDARQIYKVNVVDNGIGI 81 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-----TTCCCCCEEEEEEEETTTTEEEEEEECCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cCCCeEEEEEEEECCCcCceEEEEEEECCCCC
Confidence 68999999999999998743 123578999998754 88999999999986
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=94.99 E-value=0.021 Score=50.91 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.-|++++.||+.||+-|.+.-+ ..-|+|+|..+. +|.|+|+|-|...
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~------~~~I~V~i~~~g---~i~V~DnGrGIp~ 80 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGH------CKEIIVTIHADN---SVSVQDDGRGIPT 80 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC------CCEEEEEECTTS---CEEEEECSSCCCC
T ss_pred ccHHHHHHHHHHHHHHHHhcCC------CCEEEEEEeCCC---cEEEEECCcCccc
Confidence 4699999999999999988522 345999997642 7999999988753
No 28
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=94.94 E-value=0.022 Score=49.89 Aligned_cols=46 Identities=28% Similarity=0.261 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.=|++++.|++.||+-+.+..| ...|+|+|..+. .|.|+|+|-|..
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~------~~~I~V~i~~~g---~i~V~DnG~Gip 75 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGY------ANQIEVVIEKDN---WIKVTDNGRGIP 75 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS------CCEEEEEEEGGG---EEEEEECSSCCC
T ss_pred cchHHHHHHHHHHHHhHHhcCC------CcEEEEEEeCCC---eEEEEECCCCcc
Confidence 4689999999999999877533 245999998653 899999998864
No 29
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=94.87 E-value=0.016 Score=51.29 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CC---CCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 238 LMVFELVKNSLRAVEERYMD---SD---KVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 238 yIl~ELlKNAmRAtvE~h~~---~~---~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
..+.||++||..|.-...-. +. ..-++|+|.|...++.-+|.|.|+|.|.
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GM 84 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGM 84 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCC
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCC
Confidence 58999999999998753210 00 1125566666544456689999999886
No 30
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=94.59 E-value=0.027 Score=57.47 Aligned_cols=52 Identities=29% Similarity=0.183 Sum_probs=42.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCC-CeEEEEEeecCcchh
Q 022051 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL-EDVTIKVLLLFMICL 288 (303)
Q Consensus 232 VPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~-edvtIkISD~g~~~~ 288 (303)
=|..|++++.||+.||++|+.+. ...|.|+|++..++ +.+.|.|+|+|.|..
T Consensus 34 D~~~L~~Vl~ELV~NAIDa~~~~-----g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp 86 (621)
T 2q2e_B 34 APRSLITTVKEAVDNALDACEEA-----GILPDILVQVERTGPDYVTVIIEDNGPGIV 86 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-----SCSCEEEECCEEETTTEEEEEEECCSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhhc-----CCCcEEEEEEEECCCcEEEEEEEECCCCCC
Confidence 36789999999999999997531 23567999988766 779999999999864
No 31
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.17 E-value=0.027 Score=53.84 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
.=|++++.||+-||+-|.+..+ ..-|+|+|..+. .|+|+|+|-|...
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~------a~~I~V~i~~~g---~I~V~DnGrGIp~ 75 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGE------CRDVVLEVGGDG---SIALFCTSRTVTA 75 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEEEESSCCH
T ss_pred chHHHHHHHHHhhhHhHHhhCC------CCEEEEEEeCCC---EEEEEECCCCcCH
Confidence 4589999999999999976522 456999998654 8999999999764
No 32
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=93.99 E-value=0.036 Score=49.59 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-c---CC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERY-M---DS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h-~---~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+..+.||+.||..|.-... . +. ....|+++|.|....+.-+|+|+|+|.|.
T Consensus 34 ~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GM 90 (228)
T 3t0h_A 34 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGM 90 (228)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCC
Confidence 4579999999999987532 1 10 11245677777655556689999999995
No 33
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=93.79 E-value=0.056 Score=52.25 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=40.5
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
++.|+| =|+|++.||+-||+-|.+.. + ...-|+|+|..++ =.|+|.|+|-|..
T Consensus 46 ~~~~~~-GL~~lv~EivdNsiDe~~~~-g----~~~~I~V~i~~~~--~~I~V~DnGrGIP 98 (400)
T 1zxm_A 46 EVTFVP-GLYKIFDEILVNAADNKQRD-P----KMSCIRVTIDPEN--NLISIWNNGKGIP 98 (400)
T ss_dssp EEEECH-HHHHHHHHHHHHHHHHHHHC-T----TCCEEEEEEETTT--TEEEEEEESSCCC
T ss_pred cccccc-hHHHHHHHHHhhHHhHHhhc-C----CCceEEEEEECCC--CEEEEEECCCccc
Confidence 355565 49999999999999996531 1 2456999998754 3899999998875
No 34
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=93.73 E-value=0.046 Score=52.67 Aligned_cols=45 Identities=22% Similarity=0.139 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-|++++.||+.||+-|.+..| ..-|+|+|..+. .|+|+|+|-|..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~------a~~I~V~i~~~g---~I~V~DnG~GIp 78 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGH------CKEIIVTIHADN---SVSVQDDGRGIP 78 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------CCEEEEEECTTS---CEEEEECSSCCC
T ss_pred CHHHHHHHHHHhHHHHHhcCC------CCEEEEEEeCCC---EEEEEECCCCcc
Confidence 589999999999999987522 346999998753 899999999875
No 35
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=93.63 E-value=0.055 Score=48.41 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.-|++++.|++.||+-+.+.-+ ..-|+|+|..+. +|.|.|+|-|..
T Consensus 39 ~gl~~~v~Eiv~NaiD~~~~g~------~~~I~V~i~~~g---~i~V~DnG~GIp 84 (226)
T 4emv_A 39 AGLHHLVWEIVDNAVDEALSGF------GDRIDVTINKDG---SLTVQDHGRGMP 84 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCC
T ss_pred ccHHHHHHHHHHHHHHHHhcCC------CcEEEEEEeCCC---eEEEEEcCCCcc
Confidence 4589999999999999877422 346999997642 799999998864
No 36
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=93.41 E-value=0.1 Score=46.76 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~----~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+..|.||++||..|.-+..- +. ...-++++|.|...++.-+|.|+|+|.|.
T Consensus 34 ~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GM 90 (236)
T 2gqp_A 34 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGM 90 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred hHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCC
Confidence 45799999999999865321 11 01124455555433334589999999985
No 37
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=92.93 E-value=0.21 Score=43.97 Aligned_cols=49 Identities=6% Similarity=-0.137 Sum_probs=41.2
Q ss_pred ecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 231 yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
.+|..+..++.-|++||.+|+-+ =..|.|.+...++.+.|.|+|.|-|.
T Consensus 142 ~~~~~~~qvl~NLl~NA~~a~~~--------gg~I~v~~~~~~~~~~i~V~D~G~Gi 190 (247)
T 4fpp_A 142 AMNKPSSRAVLNIAQIAASALPA--------GGVATVKGVAADGRFSIIADAKGPRA 190 (247)
T ss_dssp EECHHHHHHHHHHHHHHHTTCTT--------CCEEEEEEEEETTEEEEEEEEESTTC
T ss_pred hhhHHHHHHHHHHHHHHHHhcCC--------CCeEEEEEEEECCEEEEEEEEcCCCC
Confidence 45888999999999999988621 13589999999999999999999884
No 38
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=92.92 E-value=0.081 Score=47.24 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc----C----CCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERYM----D----SDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~----~----~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
...+.||++||..|.-+..- + ....-+.|+|.+..+. -+|.|.|+|.|.-
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--~~i~I~DnG~GMs 106 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--RTLTISDNGVGMT 106 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--TEEEEEECSSCCC
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--eEEEEEECCCCCC
Confidence 45799999999999864321 0 0011234555554333 4699999999963
No 39
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=92.90 E-value=0.13 Score=47.13 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHh----cCC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 238 LMVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 238 yIl~ELlKNAmRAtvE~h----~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
..|.||+.||..|.-... .+. ...-|.++|.|...++.-+|.|+|+|.|.
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGM 86 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGM 86 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCC
Confidence 379999999999986432 111 01235566666555566789999999986
No 40
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=92.21 E-value=0.13 Score=46.95 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h----~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+..|.||+.||.-|.-... .+. ...-|+++|.|....+.-+|+|.|+|.|.
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GM 118 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGM 118 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCc
Confidence 4679999999999986522 111 11235677777655556789999999995
No 41
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=91.99 E-value=0.065 Score=48.95 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~----~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
...|.||++||..|.-...- +. ...-+.|+|.|...++.-+|.|+|+|.|.
T Consensus 70 ~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GM 126 (264)
T 1yc1_A 70 EIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGM 126 (264)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCC
Confidence 34789999999999864221 10 01125667776544445689999999986
No 42
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=91.89 E-value=0.13 Score=48.87 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-+.+++.||++||+.|. . ..|.|.+..+. ...|.|+|+|-|..
T Consensus 28 ~~~~vv~eLv~NAidA~----a------~~I~I~i~~~~-~~~I~V~DnG~GI~ 70 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK----S------TSIQVIVKEGG-LKLIQIQDNGTGIR 70 (348)
T ss_dssp SHHHHHHHHHHHHHHTT----C------SEEEEEEEGGG-TSEEEEEECSCCCC
T ss_pred CHHHHHHHHHHHHHHcC----C------CEEEEEEEeCC-EEEEEEEECCcCcC
Confidence 36789999999999991 1 25888886543 46799999999964
No 43
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=91.89 E-value=0.11 Score=49.83 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
++++.||+.||+-|.+. + ...-|+|+|..+. .|+|+|+|-|..
T Consensus 33 ~~lv~ElvdNsiD~a~~--g----~a~~I~V~i~~~g---~I~V~DnG~GIp 75 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--G----HAKRVDVILHADQ---SLEVIDDGRGMP 75 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T----CCSEEEEEECTTS---CEEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHHhc--C----CCCEEEEEEecCC---EEEEEECCCCcC
Confidence 78999999999999873 1 2456999997653 899999999875
No 44
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=91.76 E-value=0.17 Score=45.64 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h----~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+..|.||+.||..|.-... .+. ...-|.++|.|...++.-+|.|+|+|.|.
T Consensus 41 ~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGM 97 (239)
T 3nmq_A 41 EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGM 97 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCC
Confidence 4579999999999986532 111 01235566776666667889999999884
No 45
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=91.67 E-value=0.15 Score=48.70 Aligned_cols=43 Identities=30% Similarity=0.056 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-+.+++.||++||+.|. . .-|.|.+..+ ....|+|+|+|-|..
T Consensus 25 ~~~~vv~eLv~NaiDA~-----a-----~~I~I~i~~~-~~~~i~V~DnG~Gi~ 67 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-----A-----NQIEIIFKDY-GLESIECSDNGDGID 67 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-----C-----SEEEEEEETT-TTSEEEEEECSCCCC
T ss_pred CHHHHHHHHHHHHHHCC-----C-----CEEEEEEEeC-CEEEEEEEECCCCcC
Confidence 36789999999999982 1 1488888543 457899999999964
No 46
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=91.63 E-value=0.14 Score=48.67 Aligned_cols=44 Identities=30% Similarity=0.034 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.-+..++.||++||+.|. . ..|.|.+..+ ....|.|.|+|.|..
T Consensus 33 ~~~~~vl~eLv~NAiDA~-----a-----~~I~I~i~~~-~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDAG-----A-----TNIDLKLKDY-GVDLIEVSDNGCGVE 76 (365)
T ss_dssp CCHHHHHHHHHHHHHHTT-----C-----SEEEEEEEGG-GTSEEEEEECSCCCC
T ss_pred hhHHHHHHHHHHHHHHCC-----C-----CEEEEEEEeC-CcEEEEEEECCCCcC
Confidence 346899999999999973 1 2488888764 446899999999863
No 47
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=91.02 E-value=0.14 Score=47.28 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCC--CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h----~~~--~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+..|.||+.||..|.-... .+. ....|+++|.|...++.-+|.|+|+|.|.
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGM 104 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGM 104 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCC
Confidence 3468999999999986432 111 02245566666655556789999999995
No 48
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=90.65 E-value=0.18 Score=48.85 Aligned_cols=44 Identities=14% Similarity=-0.037 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
+|++.|++-||+-+-+.-| ..-|+|+|..+. +|.|+|+|-|...
T Consensus 52 ~hlv~EivdNsiDea~ag~------~~~I~V~i~~dg---sI~V~DnGrGIPv 95 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGH------AKQIEVTLYKDG---SCEVSDDGRGMPV 95 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTS------CCEEEEEECTTS---CEEEEECSSCCCC
T ss_pred chhhHHHHHHHHHHhhcCC------CceEEEEEeCCC---eEEEEEcCCCCCc
Confidence 8999999999999877533 335999996432 7999999988753
No 49
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=90.34 E-value=0.16 Score=47.60 Aligned_cols=43 Identities=28% Similarity=0.077 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
-+..++.||+.||+.|.- .-|+|.+..+. ...|.|.|+|-|..
T Consensus 24 ~~~~~v~ELi~NaidA~a----------~~I~I~i~~~~-~~~i~V~DnG~Gi~ 66 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA----------TRIDIDIERGG-AKLIRIRDNGCGIK 66 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC----------SEEEEEEEGGG-TSEEEEEECSCCCC
T ss_pred CHHHHHHHHHHHHHHCCC----------CeEEEEEEeCC-ceEEEEEEcCCCcC
Confidence 478899999999999841 24888887643 36899999999974
No 50
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=90.32 E-value=0.21 Score=47.91 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 234 sHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
.-+++++.|++.||+-+.+.. ..+.|+|++..+. .|.|+|+|-|..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~------~~~~I~V~i~~~~---~i~V~DnG~GIp 76 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG------YATEILVRLNEDG---SLTVEDNGRGIP 76 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT------SCCEEEEEECTTS---CEEEEECSSCCC
T ss_pred chHHHHHHHHHHHHHHHhhhC------CCCEEEEEEEcCC---EEEEEEcCCCCC
Confidence 468999999999999998752 1356999986542 899999999865
No 51
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=90.01 E-value=0.37 Score=46.75 Aligned_cols=53 Identities=17% Similarity=0.012 Sum_probs=40.8
Q ss_pred eeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 228 ~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
...|+|. |+|++.|++-||+-+.+.. ...+-|+|+|.... =+|.|.|+|-|..
T Consensus 58 ~v~~~~G-L~~lv~EivdNaiDe~~~~-----g~~~~I~V~i~~d~--~sI~V~DnGrGIP 110 (418)
T 1pvg_A 58 NVTIVPG-LFKIFDEILVNAADNKVRD-----PSMKRIDVNIHAEE--HTIEVKNDGKGIP 110 (418)
T ss_dssp EEEECHH-HHHHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTT--TEEEEEEESSCCC
T ss_pred cccccch-HHHHHHHHHhCHHHHHHhc-----CCCCEEEEEEECCC--CEEEEEECCCccc
Confidence 4667775 9999999999999886531 12567999998644 3788899999875
No 52
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=86.87 E-value=0.88 Score=45.75 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCC----CCCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERY----MDS----DKVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h----~~~----~~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+..|.||+.||..|.-... .+. +..-+-|+|.+.++. -+|+|+|+|.|.-
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~I~I~DnGiGMt 86 (559)
T 1y4s_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--RTLTISDNGVGMT 86 (559)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--TEEEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--cEEEEEECCCCCC
Confidence 5579999999999984321 111 122245666665444 5899999999863
No 53
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=84.98 E-value=2 Score=40.73 Aligned_cols=50 Identities=16% Similarity=0.005 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecC-CCeEEEEEeecCcchhh
Q 022051 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVLLLFMICLC 289 (303)
Q Consensus 235 HL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g-~edvtIkISD~g~~~~~ 289 (303)
.+.-++.||+-||+++.- ....-.+|.|.+... +..+.|.|+|.|-|..-
T Consensus 297 ~~~l~v~El~~Nav~Ha~-----~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~ 347 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGY-----ATDVSKGIVVAAALAGDGNVRASVIDRGQWKDH 347 (399)
T ss_dssp HHHHHHHHHHHHHHHHBC-----CSCCTTCEEEEEEECTTSEEEEEEEESCBC---
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCCCceEEEEEEEcCCCEEEEEEEECCCCCCC
Confidence 578899999999997632 222245799998876 56899999999998653
No 54
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=84.87 E-value=1 Score=45.92 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCC----CCCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERY----MDS----DKVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h----~~~----~~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+..|.||+.||..|.-... .+. +..-+-|+|.+.++. -+|+|+|+|.|.
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--~~I~I~DnGiGM 85 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--RTLTISDNGVGM 85 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--TEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--cEEEEEECCCCC
Confidence 4579999999999984321 111 011234666664443 589999999885
No 55
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=83.69 E-value=0.96 Score=46.43 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-c---CCC--CCCCCeEEEEecCCCeEEEEEeecCcch
Q 022051 237 HLMVFELVKNSLRAVEERY-M---DSD--KVAPPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h-~---~~~--~~lPPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
+-.|.||+.||.-|.-... . +.. ..-++++|.|.-.++.-+|.|+|+|.|.
T Consensus 47 eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGM 103 (666)
T 2o1u_A 47 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGM 103 (666)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCC
T ss_pred hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCC
Confidence 4579999999999985432 1 110 1123344444433333589999999886
No 56
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=82.72 E-value=3 Score=35.89 Aligned_cols=138 Identities=7% Similarity=0.067 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHhhhhhHhhhHhhhhhhcCCCCCCC
Q 022051 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183 (303)
Q Consensus 104 ~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~~~~~~~~~~~i~~FLD~f~~sRIsiRlL~~qHlaL~~~~~~~~ 183 (303)
.....++.+.|+....++.+=+-++ .|+.+++++ ++...|+++.....-...- +.-.+ .|.
T Consensus 15 l~~~~~~~~~LR~qrHdf~NkLqvI-~GLlql~~y----------dea~~yI~~~~~~~q~~~~-----~~~i~---~P~ 75 (192)
T 1ixm_A 15 TALTNELIHLLGHSRHDWMNKLQLI-KGNLSLQKY----------DRVFEMIEEMVIDAKHESK-----LSNLK---TPH 75 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCH----------HHHHHHHHHHHHHHHHHHH-----HHTTT---CHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHcCCH----------HHHHHHHHHHHHHHHHHHH-----HHhCC---CHH
Confidence 3445667788888777777665554 678888765 4666666665433321110 10000 011
Q ss_pred cceEecCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEEe---cCCCceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 022051 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY---GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDK 260 (303)
Q Consensus 184 ~iGiI~~~~~~~~vv~~a~~~a~~lC~~~yg~~P~v~i~---g~~d~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~ 260 (303)
..|. =..++..+.++.+. -+.+-..+-.|.. +..|+.||+.|+-.. ... .
T Consensus 76 la~l---------------------Ll~K~~~a~e~~i~lev~~~~s~l~~~~~~----lgnLi~na~~Ai~~~-~~~-~ 128 (192)
T 1ixm_A 76 LAFD---------------------FLTFNWKTHYMTLEYEVLGEIKDLSAYDQK----LAKLMRKLFHLFDQA-VSR-E 128 (192)
T ss_dssp HHHH---------------------HHHGGGSCCSSEEEEEEESSCCCCTTTHHH----HHHHHHHHHHHHHHH-BCT-T
T ss_pred HHHH---------------------HHHHHHHhccCCeEEEEecCccccCCCcHH----HHHHHHHHHHHHHhh-hcc-C
Confidence 1111 12344455444332 1222223333433 467888888887543 111 2
Q ss_pred CCCCeEEEEecC--CCeEEEEEeecCcch
Q 022051 261 VAPPIRIIVADG--LEDVTIKVLLLFMIC 287 (303)
Q Consensus 261 ~lPPI~V~I~~g--~edvtIkISD~g~~~ 287 (303)
.-+.|.|++... ++++.|.|+|.|-|.
T Consensus 129 ~~~~I~i~i~~~~~~~~l~i~V~d~G~~i 157 (192)
T 1ixm_A 129 SENHLTVSLQTDHPDRQLILYLDFHGAFA 157 (192)
T ss_dssp SCCEEEEEEECCCSSSSCEEEEEEESCBS
T ss_pred CCCeEEEEEEEecCCCEEEEEEEeCCCCC
Confidence 356799999987 789999999999874
No 57
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=82.06 E-value=1 Score=46.32 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-c---CCC--CCCCCeEEEEecCCCeEEEEEeecCcchh
Q 022051 237 HLMVFELVKNSLRAVEERY-M---DSD--KVAPPIRIIVADGLEDVTIKVLLLFMICL 288 (303)
Q Consensus 237 ~yIl~ELlKNAmRAtvE~h-~---~~~--~~lPPI~V~I~~g~edvtIkISD~g~~~~ 288 (303)
+-.|.||+.||.-|.-... . +.. ..-+.++|.|.-.++.-+|.|+|+|.|..
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt 85 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMT 85 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCC
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCC
Confidence 3479999999999986432 1 110 11233444443333345899999998853
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=73.27 E-value=2.4 Score=46.23 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=39.3
Q ss_pred ceeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCeEEEEEeecCcchhh
Q 022051 227 FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVLLLFMICLC 289 (303)
Q Consensus 227 ~~f~yVPsHL~yIl~ELlKNAmRAtvE~h~~~~~~lPPI~V~I~~g~edvtIkISD~g~~~~~ 289 (303)
-+..|||. |||++.|++-||+---+--|. .--|+|+|-. +|=+|.|.|+|-|...
T Consensus 52 ~~vt~v~G-L~hl~~EildNsiDea~ag~~-----~~~I~V~i~~--~d~sisV~DnGRGIPv 106 (1177)
T 4gfh_A 52 KNVTIVPG-LFKIFDEILVNAADNKVRDPS-----MKRIDVNIHA--EEHTIEVKNDGKGIPI 106 (1177)
T ss_dssp EEEEECHH-HHHHHHHHHHHHHHHHHHCTT-----CCEEEEEEET--TTTEEEEEECSSCCCC
T ss_pred ccccccce-eeeEeeEEEEChHhHHhhCCC-----CCeEEEEEEC--CCCEEEEEecCCcccc
Confidence 35678876 999999999999983332221 2248999853 3447889999998763
No 59
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=69.56 E-value=2 Score=39.37 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCeEEEEEeecCcch
Q 022051 263 PPIRIIVADGLEDVTIKVLLLFMIC 287 (303)
Q Consensus 263 PPI~V~I~~g~edvtIkISD~g~~~ 287 (303)
++.+|.|.-.++.-+|.|.|+|.|.
T Consensus 117 ~~l~I~I~~Dk~~~tLtI~DNGiGM 141 (272)
T 3ied_A 117 KKLIIKIKPDKEKKTLTITDNGIGM 141 (272)
T ss_dssp GGCCEEEEEETTTTEEEEEECSCCC
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCCC
Confidence 4455555555566689999999995
No 60
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=67.10 E-value=2.2 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.3
Q ss_pred EeecCcchhhhHHHHHHHHh
Q 022051 280 VLLLFMICLCISFGIFLFLS 299 (303)
Q Consensus 280 ISD~g~~~~~~~~~~~~~~~ 299 (303)
|||.-++.+++++|++.|+.
T Consensus 2 IsD~qL~~lan~lG~~~~~L 21 (36)
T 1rkl_A 2 ISDEQLNSLAITFGIVMMTL 21 (36)
T ss_dssp CSSCGGGHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998875
No 61
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=58.72 E-value=2.2 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.5
Q ss_pred EeecCcchhhhHHHHHHHHhc
Q 022051 280 VLLLFMICLCISFGIFLFLSA 300 (303)
Q Consensus 280 ISD~g~~~~~~~~~~~~~~~~ 300 (303)
|||.-++.+++++|++.|+..
T Consensus 2 IsD~qL~~lan~lG~~~~~LI 22 (37)
T 2lat_A 2 ITDVQLAIFANMLGVSLFLLV 22 (37)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988753
No 62
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=27.01 E-value=1.3e+02 Score=22.59 Aligned_cols=48 Identities=31% Similarity=0.513 Sum_probs=33.4
Q ss_pred CCCCCCCCHHHHHh-----cC--------------CCCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccccCCchHHH
Q 022051 23 CMKQTGVSLRYMME-----FG--------------SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLK 83 (303)
Q Consensus 23 ~~~~~plSL~~Ll~-----fG--------------~~~~~~~ll~sa~fl~~ELPvRlA~ri~~l~~LP~~l~~nP~i~~ 83 (303)
+-|-+.++|.+++. || .+|+-+. |..|||+ .=.|| .+
T Consensus 9 nnPLHGvtLE~ilt~Lv~~YGW~~L~~~i~I~CF~~~PSikS---SLKFLRK---TpWAR------------------~K 64 (88)
T 2jvw_A 9 NNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKS---SLKFLRK---TDWAR------------------ER 64 (88)
T ss_dssp SCTTSSCCHHHHHHHHHHHTCHHHHHHHTTSSSTTSSCCHHH---HHHHHHH---SHHHH------------------HH
T ss_pred CCCccchhHHHHHHHHHHHhCHHHHHhhcccccCCCCCchHH---HHHHHhc---CHhHH------------------HH
Confidence 56778888887764 23 3567666 8888876 33443 57
Q ss_pred HHHHHHHHHHH
Q 022051 84 VRDWYLDSFRD 94 (303)
Q Consensus 84 V~~~Y~~Sf~~ 94 (303)
|.+.|+..|..
T Consensus 65 VE~lYL~~~~~ 75 (88)
T 2jvw_A 65 VENIYLKLQRH 75 (88)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 88999999864
No 63
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=24.23 E-value=91 Score=25.55 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 022051 58 PIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKK 137 (303)
Q Consensus 58 PvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf~~l~~~p~i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~ 137 (303)
-=.+|.||+.|.-.|..- | +.|.++...++...-. ..-.+.|+.+++++..++..+-+++..+.+
T Consensus 71 ~D~lAERI~~LGg~P~~t---~----------~~~~~~s~i~e~~~~~--~~~~eml~~ll~~~~~~i~~~r~~i~~aee 135 (164)
T 4eve_A 71 FDDLAERIVQLGHHPLVT---L----------SEAIKLTRVKEETKTS--FHSKDIFKEILEDYKHLEKEFKELSNTAEK 135 (164)
T ss_dssp HHHHHHHHHHTTCCCCCC---H----------HHHHHHCCSCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCC---H----------HHHHHHcCCCcCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999651 1 2233344444432211 013468999999999999999998877765
Q ss_pred h
Q 022051 138 E 138 (303)
Q Consensus 138 ~ 138 (303)
.
T Consensus 136 ~ 136 (164)
T 4eve_A 136 E 136 (164)
T ss_dssp T
T ss_pred C
Confidence 3
No 64
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=21.86 E-value=1.1e+02 Score=24.41 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 022051 58 PIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKK 137 (303)
Q Consensus 58 PvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf~~l~~~p~i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~ 137 (303)
-=.+|.||+.|.-.|..- | +.|.++...++...-. ..-.+.|+.+++++..++..+-+++..+.+
T Consensus 54 ~D~iAERI~~LGg~P~~t---~----------~~~~~~s~i~e~~~~~--~~~~eml~~~l~~~~~~i~~~r~~i~~a~~ 118 (152)
T 3kwo_A 54 FDSCAERVLQLGEKAITC---Q----------KVLMENAKSPKVAKDC--FTPLEVIELIKQDYEYLLAEFKKLNEAAEK 118 (152)
T ss_dssp HHHHHHHHHHTTSCCCCC---H----------HHHHHHCCSCCCCCSC--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCC---H----------HHHHhHCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999651 1 2233344444322111 013468999999999999999888877765
Q ss_pred h
Q 022051 138 E 138 (303)
Q Consensus 138 ~ 138 (303)
.
T Consensus 119 ~ 119 (152)
T 3kwo_A 119 E 119 (152)
T ss_dssp T
T ss_pred C
Confidence 3
No 65
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=21.63 E-value=90 Score=21.40 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=17.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHhhhcC
Q 022051 116 AIKVRHNNVVPMMALGLQQLKKEMD 140 (303)
Q Consensus 116 ~i~~~H~~vi~~lA~G~~E~k~~~~ 140 (303)
+-+++ .|+|.|.+|+.|+-+.-+
T Consensus 11 ~YL~~--~V~p~L~~GL~~lak~rP 33 (55)
T 3g36_A 11 AYLDQ--TVVPILLQGMAVLAKERP 33 (55)
T ss_dssp HHHHT--TTHHHHHHHHHHHHHHCC
T ss_pred HHHHH--HhHHHHHHHHHHHHHhCC
Confidence 44443 499999999999987654
No 66
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=21.53 E-value=1.2e+02 Score=24.55 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCccccCCchHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 022051 58 PIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKK 137 (303)
Q Consensus 58 PvRlA~ri~~l~~LP~~l~~nP~i~~V~~~Y~~Sf~~l~~~p~i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~ 137 (303)
-=.+|.||+.|.-.|..- | +.|.++...++.....+ -.+.|+.+++++..++..+-+++..+.+
T Consensus 67 ~D~lAERI~~LGg~P~~t---~----------~~~~~~s~i~e~~~~~~---~~eml~~ll~~~~~~i~~~r~~i~~ae~ 130 (159)
T 3iq1_A 67 IDELAERILTLSARPMHS---F----------SGYLKAAQIKEHTDSID---GRSSMQGLVDGFSILLHQQRDILELAGE 130 (159)
T ss_dssp HHHHHHHHHHTTCCCCCS---H----------HHHHHHCSSCCCCCCCS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCC---H----------HHHHHHCCCCccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457899999999999651 1 22333344444322122 3468999999999999999888877765
Q ss_pred h
Q 022051 138 E 138 (303)
Q Consensus 138 ~ 138 (303)
.
T Consensus 131 ~ 131 (159)
T 3iq1_A 131 T 131 (159)
T ss_dssp H
T ss_pred c
Confidence 4
No 67
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.14 E-value=2.4e+02 Score=22.00 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcC
Q 022051 80 AVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMD 140 (303)
Q Consensus 80 ~i~~V~~~Y~~Sf~~l~~~p~i~~~~~~~~F~~~L~~i~~~H~~vi~~lA~G~~E~k~~~~ 140 (303)
|=.-|+.+...+++. ++..+....+++|..+.+.+--+...+.+|+.++-..+.
T Consensus 39 ~~e~V~~~i~~alE~-------~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~ 92 (129)
T 2nsz_A 39 HHELVYEAIVMVLES-------TGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIP 92 (129)
T ss_dssp HHHHHHHHHHHHHHC-------CSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-------CChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhCh
Confidence 346788899999975 123455678999999999999999999999999877653
Done!