Query 022052
Match_columns 303
No_of_seqs 233 out of 429
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 99.9 2.9E-26 6.3E-31 190.0 9.7 115 177-295 1-120 (120)
2 COG1661 Predicted DNA-binding 99.9 1E-21 2.2E-26 169.2 14.1 120 176-301 8-133 (141)
3 PF02178 AT_hook: AT hook moti 96.5 0.00093 2E-08 36.7 0.6 12 103-114 1-12 (13)
4 smart00384 AT_hook DNA binding 96.5 0.0014 3.1E-08 42.2 1.3 15 103-117 1-15 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 87.8 0.18 3.9E-06 46.2 0.3 12 101-112 66-77 (219)
6 PF13546 DDE_5: DDE superfamil 74.0 1.7 3.8E-05 40.0 1.5 15 101-115 229-243 (273)
7 COG1710 Uncharacterized protei 68.4 2.2 4.8E-05 37.0 0.8 14 101-114 82-96 (139)
8 PF14869 DUF4488: Domain of un 57.6 17 0.00037 31.9 4.2 34 204-239 28-61 (133)
9 PF13737 DDE_Tnp_1_5: Transpos 55.4 3.9 8.4E-05 34.6 -0.0 21 100-121 21-41 (112)
10 COG1777 Predicted transcriptio 51.5 6.6 0.00014 36.9 0.8 24 103-126 64-88 (217)
11 PF03306 AAL_decarboxy: Alpha- 41.6 1.1E+02 0.0024 28.6 7.2 103 181-287 83-199 (220)
12 KOG4565 E93 protein involved i 39.0 10 0.00022 35.0 -0.0 13 102-114 112-124 (206)
13 PF15333 TAF1D: TATA box-bindi 30.5 22 0.00048 33.4 0.8 12 105-116 64-75 (217)
14 TIGR01252 acetolac_decarb alph 28.5 3.6E+02 0.0077 25.5 8.4 83 202-287 105-201 (232)
15 cd04618 CBS_pair_5 The CBS dom 25.3 2E+02 0.0043 22.0 5.2 35 181-215 52-87 (98)
16 smart00412 Cu_FIST Copper-Fist 20.5 45 0.00097 23.6 0.6 7 103-109 32-38 (39)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.93 E-value=2.9e-26 Score=189.97 Aligned_cols=115 Identities=20% Similarity=0.140 Sum_probs=100.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCC--CCCCeeeEEEEEEEecccceecCCCCCCccC
Q 022052 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPT--MSGGTVTYEKWWVECVPGRVRWPSFGWFSCR 254 (303)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~--ssg~tvt~eG~FEILSLsGTi~p~~g~~~~~ 254 (303)
||+|++||++||||.++|.+||+++++..|+|||+|+|++|+|++++ ......+|+|+|||+||+||+...++ .+
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---~~ 77 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG---KP 77 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT---EE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC---CC
Confidence 68999999999999999999999999988999999999999999984 34458899999999999999997544 45
Q ss_pred CCeeEEEEeCCCCceeeceeE---EeeeEEEEeeecCCCCceee
Q 022052 255 NAHGSFSSAGNCGQFYCGGEK---VELKFFEIWAFFSTNAPYVK 295 (303)
Q Consensus 255 ~~HlHISLAg~~GqViGGglv---v~~tv~vI~a~f~~n~~f~R 295 (303)
+.|+||+|+|.+|+|+|||++ +..++|+++-.+ ....|+|
T Consensus 78 ~~HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~-~~~~~~~ 120 (120)
T PF03479_consen 78 FVHLHISLADPDGQVFGGHLLEGTVFATAEVVITEL-SGINFTR 120 (120)
T ss_dssp EEEEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEE-TTEEEEE
T ss_pred cceEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEe-cCccccC
Confidence 799999999999999999997 345688888888 7888877
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.87 E-value=1e-21 Score=169.22 Aligned_cols=120 Identities=14% Similarity=-0.027 Sum_probs=108.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCC---CeeeEEEEEEEecccceecCCCCCCc
Q 022052 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEKWWVECVPGRVRWPSFGWFS 252 (303)
Q Consensus 176 ~ftpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg---~tvt~eG~FEILSLsGTi~p~~g~~~ 252 (303)
.-+-+++||++|||+++.|.+||+++.+..++++|+|++++++||+++..+ .++++.|+||||||.|++..++
T Consensus 8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---- 83 (141)
T COG1661 8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---- 83 (141)
T ss_pred cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence 346899999999999999999999999888999999999999999998543 3889999999999999999987
Q ss_pred cCCCeeEEEEeCCCCceeeceeE---EeeeEEEEeeecCCCCceeeccCCCC
Q 022052 253 CRNAHGSFSSAGNCGQFYCGGEK---VELKFFEIWAFFSTNAPYVKLRCTYD 301 (303)
Q Consensus 253 ~~~~HlHISLAg~~GqViGGglv---v~~tv~vI~a~f~~n~~f~Rlp~~~~ 301 (303)
|..|+|+++++++|.++|||++ |.-|+||+|-.+ +...++|.+|+.+
T Consensus 84 -p~~HlHa~l~~~~G~~~GGHL~~~~V~~t~Ev~I~el-~~~~~~R~~d~~g 133 (141)
T COG1661 84 -PFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIREL-PGELFRREFDPTG 133 (141)
T ss_pred -CcEEEEEEEecCCCcEEeeeecccEEeEEEEEEEEEc-cccceeEecCCCC
Confidence 5799999999999999999985 333799999999 8888999999843
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=96.50 E-value=0.00093 Score=36.71 Aligned_cols=12 Identities=67% Similarity=1.088 Sum_probs=4.6
Q ss_pred cccCCCCCCCCC
Q 022052 103 KKKRGRPRKYTP 114 (303)
Q Consensus 103 KkKRGRPRKY~p 114 (303)
+||||||+|+..
T Consensus 1 ~r~RGRP~k~~~ 12 (13)
T PF02178_consen 1 KRKRGRPRKNAK 12 (13)
T ss_dssp S--SS--TT---
T ss_pred CCcCCCCccccC
Confidence 689999999854
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=96.47 E-value=0.0014 Score=42.17 Aligned_cols=15 Identities=60% Similarity=0.922 Sum_probs=12.7
Q ss_pred cccCCCCCCCCCCCc
Q 022052 103 KKKRGRPRKYTPDGN 117 (303)
Q Consensus 103 KkKRGRPRKY~pdg~ 117 (303)
|||||||||+..+..
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 699999999977653
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=87.78 E-value=0.18 Score=46.23 Aligned_cols=12 Identities=75% Similarity=1.115 Sum_probs=10.5
Q ss_pred cCcccCCCCCCC
Q 022052 101 PAKKKRGRPRKY 112 (303)
Q Consensus 101 ~~KkKRGRPRKY 112 (303)
.+|||||||||-
T Consensus 66 dAKRKRGRPRKK 77 (219)
T PF14621_consen 66 DAKRKRGRPRKK 77 (219)
T ss_pred hhhhhcCCCccC
Confidence 569999999976
No 6
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=73.96 E-value=1.7 Score=39.98 Aligned_cols=15 Identities=60% Similarity=1.041 Sum_probs=11.5
Q ss_pred cCcccCCCCCCCCCC
Q 022052 101 PAKKKRGRPRKYTPD 115 (303)
Q Consensus 101 ~~KkKRGRPRKY~pd 115 (303)
+..+|||||||||.-
T Consensus 229 ~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 229 PPPPKRGRPRKYGRR 243 (273)
T ss_pred ccCCCCCCCCCCCCc
Confidence 445669999999854
No 7
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.41 E-value=2.2 Score=37.04 Aligned_cols=14 Identities=71% Similarity=1.222 Sum_probs=11.5
Q ss_pred cCc-ccCCCCCCCCC
Q 022052 101 PAK-KKRGRPRKYTP 114 (303)
Q Consensus 101 ~~K-kKRGRPRKY~p 114 (303)
|.| |-|||||||+-
T Consensus 82 Pvk~KgrGrprkyd~ 96 (139)
T COG1710 82 PVKLKGRGRPRKYDR 96 (139)
T ss_pred eeeecCCCCCcccch
Confidence 557 78999999964
No 8
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=57.64 E-value=17 Score=31.88 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=29.4
Q ss_pred eEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEec
Q 022052 204 TVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECV 239 (303)
Q Consensus 204 aicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILS 239 (303)
.+=|||.-|...|+++ .+. ++.++++.|.||+.|
T Consensus 28 ~lKilS~Dgtf~Ni~~-~~~-~~aiIt~~GtY~~~s 61 (133)
T PF14869_consen 28 VLKILSDDGTFVNITM-IPK-SGAIITGYGTYEQPS 61 (133)
T ss_pred cEEEEcCCCcEEEEEE-eCC-CCcEEEEeEEEEEcC
Confidence 4779999999999999 333 468999999999998
No 9
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=55.44 E-value=3.9 Score=34.55 Aligned_cols=21 Identities=43% Similarity=0.813 Sum_probs=15.7
Q ss_pred CcCcccCCCCCCCCCCCccccc
Q 022052 100 DPAKKKRGRPRKYTPDGNIALR 121 (303)
Q Consensus 100 ~~~KkKRGRPRKY~pdg~~~~~ 121 (303)
++...|||||++| +|-.|...
T Consensus 21 ~~~~~kRGr~~~y-SD~aI~~~ 41 (112)
T PF13737_consen 21 APPRGKRGRPPRY-SDAAIQTC 41 (112)
T ss_pred cCCCCCCCCCccc-chHHHHHH
Confidence 3457899999999 78765543
No 10
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=51.54 E-value=6.6 Score=36.87 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=17.5
Q ss_pred cccCCCCCCCC-CCCccccccccCC
Q 022052 103 KKKRGRPRKYT-PDGNIALRLATTA 126 (303)
Q Consensus 103 KkKRGRPRKY~-pdg~~~~~l~p~~ 126 (303)
|.+|||||||- +-+++++-..-+|
T Consensus 64 ~~~Rg~~rKYY~Is~~~rleV~lsp 88 (217)
T COG1777 64 KIPRGRPRKYYMISRNLRLEVTLSP 88 (217)
T ss_pred ccccCCCcceeeccCCeEEEEEecC
Confidence 78889999995 7777776554433
No 11
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=41.57 E-value=1.1e+02 Score=28.57 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=52.4
Q ss_pred EEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC-------eeeEEEEEEEec----ccceecCCC-
Q 022052 181 VITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG-------TVTYEKWWVECV----PGRVRWPSF- 248 (303)
Q Consensus 181 VIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~-------tvt~eG~FEILS----LsGTi~p~~- 248 (303)
+.....-+++.+.|.+..... .....+-..|..+.|++|-.....+ .+.=+-.||.-- |.|.++|.-
T Consensus 83 ~~~~~~~~~l~~~l~~~~~~~-N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~ 161 (220)
T PF03306_consen 83 LDSPMSKEELEAKLDELLPSK-NLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYM 161 (220)
T ss_dssp -EEEEEHHHHHHHHHHHSS-T-TS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGG
T ss_pred cCCCCCHHHHHHHHHHhcCCC-ceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhc
Confidence 344455677888888876633 4467777899999999998653322 111123344433 455566762
Q ss_pred CCCccCCCeeEEEEeCCCCceeeceeEEee--eEEEEeeec
Q 022052 249 GWFSCRNAHGSFSSAGNCGQFYCGGEKVEL--KFFEIWAFF 287 (303)
Q Consensus 249 g~~~~~~~HlHISLAg~~GqViGGglvv~~--tv~vI~a~f 287 (303)
+..+.+--|||+--.| +-+|||++--. .+.+-+..+
T Consensus 162 ~gi~v~G~HlHFls~D---r~~GGHvld~~~~~~~v~~~~~ 199 (220)
T PF03306_consen 162 GGINVPGFHLHFLSDD---RTFGGHVLDFELDNGTVEIDVF 199 (220)
T ss_dssp BTTB-CEEEEEEEETT---SS-EEEEEEEEEEEEEEEEEE-
T ss_pred cccCCceEEEEEecCC---CCCCCCeEEEEeceEEEEEEec
Confidence 2233444566665444 67799986422 244444444
No 12
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=38.97 E-value=10 Score=34.95 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=11.3
Q ss_pred CcccCCCCCCCCC
Q 022052 102 AKKKRGRPRKYTP 114 (303)
Q Consensus 102 ~KkKRGRPRKY~p 114 (303)
-+|||||=|+|.-
T Consensus 112 pRkKRGrYRqYd~ 124 (206)
T KOG4565|consen 112 PRKKRGRYRQYDK 124 (206)
T ss_pred ccccccchhhhhH
Confidence 4899999999964
No 13
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=30.52 E-value=22 Score=33.38 Aligned_cols=12 Identities=50% Similarity=1.027 Sum_probs=8.9
Q ss_pred cCCCCCCCCCCC
Q 022052 105 KRGRPRKYTPDG 116 (303)
Q Consensus 105 KRGRPRKY~pdg 116 (303)
|+-+-|||-|-|
T Consensus 64 KkrkkrKYk~tg 75 (217)
T PF15333_consen 64 KKRKKRKYKPTG 75 (217)
T ss_pred HHhhhhccCccC
Confidence 566779998765
No 14
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=28.46 E-value=3.6e+02 Score=25.52 Aligned_cols=83 Identities=11% Similarity=-0.031 Sum_probs=48.2
Q ss_pred CceEEEEeecceeeeEEEcCCCCCCC-------eeeEEEEEEEecccce----ecCCC-CCCccCCCeeEEEEeCCCCce
Q 022052 202 PRTVCILSASGAICNVTLRQPTMSGG-------TVTYEKWWVECVPGRV----RWPSF-GWFSCRNAHGSFSSAGNCGQF 269 (303)
Q Consensus 202 ~raicILSa~GaVSnVTLRqp~ssg~-------tvt~eG~FEILSLsGT----i~p~~-g~~~~~~~HlHISLAg~~GqV 269 (303)
....+-+-..|..+.|..|-.-...+ .+.=+-.||.-.+.|| ++|.- .+.+.+.-|||+-=.| +-
T Consensus 105 ~N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD---r~ 181 (232)
T TIGR01252 105 KNVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED---RT 181 (232)
T ss_pred CccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC---CC
Confidence 35688889999999999998543222 1122455666665555 55653 2333444566654333 55
Q ss_pred eeceeEEee--eEEEEeeec
Q 022052 270 YCGGEKVEL--KFFEIWAFF 287 (303)
Q Consensus 270 iGGglvv~~--tv~vI~a~f 287 (303)
+|||++.-. .+.+-++.+
T Consensus 182 ~GGHVld~~~~~~~~~i~~~ 201 (232)
T TIGR01252 182 FGGHVLDYIIDNGTLEIGQI 201 (232)
T ss_pred CCcceeEEEeeeeEEEEeec
Confidence 688876432 244445544
No 15
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=25.32 E-value=2e+02 Score=21.98 Aligned_cols=35 Identities=6% Similarity=0.175 Sum_probs=31.0
Q ss_pred EEEecCCCcHHHHHHHHHhhCCceEEEEeec-ceee
Q 022052 181 VITVKAGEDISSKIFAFSQQGPRTVCILSAS-GAIC 215 (303)
Q Consensus 181 VIrV~~GEDV~~kI~~faqq~~raicILSa~-GaVS 215 (303)
++.+.+.+++.+.+..|.+++-+.++|+... |-+.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~ 87 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGL 87 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCce
Confidence 7899999999999999999999999999876 6543
No 16
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=20.49 E-value=45 Score=23.64 Aligned_cols=7 Identities=57% Similarity=1.142 Sum_probs=5.9
Q ss_pred cccCCCC
Q 022052 103 KKKRGRP 109 (303)
Q Consensus 103 KkKRGRP 109 (303)
=||||||
T Consensus 32 i~kkGRP 38 (39)
T smart00412 32 VRPRGRP 38 (39)
T ss_pred ecCCCCC
Confidence 5889998
Done!