Query 022052
Match_columns 303
No_of_seqs 233 out of 429
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.9 7.7E-27 2.6E-31 197.7 13.7 115 177-300 2-121 (142)
2 2hx0_A Putative DNA-binding pr 99.9 1.2E-26 4.2E-31 199.0 15.1 120 172-300 13-137 (154)
3 2dt4_A Hypothetical protein PH 99.9 5.1E-27 1.8E-31 198.3 9.6 118 178-300 10-132 (143)
4 2h6l_A Hypothetical protein; N 99.9 5.1E-27 1.8E-31 198.9 8.9 118 178-300 10-132 (146)
5 3htn_A Putative DNA binding pr 99.9 3.3E-26 1.1E-30 195.3 10.4 118 178-300 16-139 (149)
6 3hwu_A Putative DNA-binding pr 99.9 1.3E-22 4.3E-27 172.7 12.2 117 178-300 13-136 (147)
7 2ezd_A High mobility group pro 96.6 0.00095 3.2E-08 41.8 2.0 16 150-165 3-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 77.0 0.7 2.4E-05 38.0 0.9 14 103-116 4-17 (140)
9 4i95_A Putative uncharacterize 70.5 4.9 0.00017 34.3 4.5 34 204-239 37-70 (142)
10 4gzv_A Hypothetical protein; A 51.4 17 0.00058 31.0 4.5 34 204-239 37-70 (142)
11 3fcg_A F1 capsule-anchoring pr 43.2 38 0.0013 26.5 5.1 44 214-270 26-74 (90)
12 1xv2_A ALDC, hypothetical prot 41.7 71 0.0024 28.8 7.4 96 187-287 96-205 (237)
13 1t3g_A X-linked interleukin-1 41.6 19 0.00065 30.0 3.3 28 184-211 51-78 (159)
14 1fyx_A TOLL-like receptor 2; b 31.1 26 0.0009 28.6 2.5 29 183-211 43-71 (149)
15 2j67_A TOLL like receptor 10; 29.2 30 0.001 29.4 2.6 29 183-211 73-101 (178)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=7.7e-27 Score=197.65 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=104.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHhhCCc-eEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEecccceecCCCCCCccCC
Q 022052 177 FTPHVITVKAGEDISSKIFAFSQQGPR-TVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRN 255 (303)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~faqq~~r-aicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILSLsGTi~p~~g~~~~~~ 255 (303)
|++|++||++||||.++|.+||+++++ +.||++++|++++++||+++. ..+++|+|+|||+||+||+.++.
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~-~~~~~~~g~~EIlsl~Gti~~~~------- 73 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEILSLSGTLTYQH------- 73 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTS-SCEEEECSCEEEEEEEEEECSSC-------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCC-CccEecCCcEEEEEeEEEEeCCC-------
Confidence 789999999999999999999999885 799999999999999999995 44789999999999999999862
Q ss_pred CeeEEEEeCCCCceeeceeE----EeeeEEEEeeecCCCCceeeccCCC
Q 022052 256 AHGSFSSAGNCGQFYCGGEK----VELKFFEIWAFFSTNAPYVKLRCTY 300 (303)
Q Consensus 256 ~HlHISLAg~~GqViGGglv----v~~tv~vI~a~f~~n~~f~Rlp~~~ 300 (303)
.|+||+++|.+|+|+|||++ |..++|+++..| .++.|+|++|++
T Consensus 74 ~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~-~~~~~~R~~D~e 121 (142)
T 2p6y_A 74 CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHHFTREFDPN 121 (142)
T ss_dssp EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC-TTEEEEEEEETT
T ss_pred CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc-cCCeEEEeeCCC
Confidence 89999999999999999875 456799999999 898999999974
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=1.2e-26 Score=198.99 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=108.0
Q ss_pred cCCCCceEEEEEecCCCcHHHHHHHHHhhCC-ceEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEecccceecCCCCC
Q 022052 172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGW 250 (303)
Q Consensus 172 ~~g~~ftpHVIrV~~GEDV~~kI~~faqq~~-raicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILSLsGTi~p~~g~ 250 (303)
+....+++|++||++||||.++|.+||++++ ++.||++++|+|++++||+++.. .+++|+|+|||+||+||+++++
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~~-- 89 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG-- 89 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE--
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCC-ccEecCCcEEEEEeeeeEeCCC--
Confidence 4557889999999999999999999998777 58999999999999999999954 4889999999999999999862
Q ss_pred CccCCCeeEEEEeCCCCceeeceeE----EeeeEEEEeeecCCCCceeeccCCC
Q 022052 251 FSCRNAHGSFSSAGNCGQFYCGGEK----VELKFFEIWAFFSTNAPYVKLRCTY 300 (303)
Q Consensus 251 ~~~~~~HlHISLAg~~GqViGGglv----v~~tv~vI~a~f~~n~~f~Rlp~~~ 300 (303)
.|+||+++|.+|+|+|||++ |..++|+++..| .++.|+|++|++
T Consensus 90 -----~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~-~~~~~~R~~D~e 137 (154)
T 2hx0_A 90 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQPCAI 137 (154)
T ss_dssp -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEECTT
T ss_pred -----CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc-cCceEEEecCCC
Confidence 89999999999999999875 456799999999 888999999975
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=5.1e-27 Score=198.29 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=104.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCC---CeeeEEEEEEEecccceecCCCCCCccC
Q 022052 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEKWWVECVPGRVRWPSFGWFSCR 254 (303)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg---~tvt~eG~FEILSLsGTi~p~~g~~~~~ 254 (303)
++|++||++||||.++|.+||+++++..|+++++|+|++|+||+++... ..++|+|+|||+||+||+.+++| .+
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g---~p 86 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG---EP 86 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT---EE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC---Cc
Confidence 6999999999999999999999998776667999999999999998554 27889999999999999998765 45
Q ss_pred CCeeEEEEeCCCCceeeceeEEe--eeEEEEeeecCCCCceeeccCCC
Q 022052 255 NAHGSFSSAGNCGQFYCGGEKVE--LKFFEIWAFFSTNAPYVKLRCTY 300 (303)
Q Consensus 255 ~~HlHISLAg~~GqViGGglvv~--~tv~vI~a~f~~n~~f~Rlp~~~ 300 (303)
+.|+||+++|.+|+|+|||++-. .++|+++..| .++.|+|++ ++
T Consensus 87 ~~HlHi~l~~~~G~v~GGHl~~g~v~t~Ev~i~~~-~~~~~~R~~-~e 132 (143)
T 2dt4_A 87 FVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQEL-KGEKIERKP-TK 132 (143)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEE-EESCCEEBC-CT
T ss_pred eeeEEEEEECCCCCEeCCCCCCCceEEEEEEEEEc-CCCeEEEeC-CC
Confidence 79999999999999999998743 2788999999 899999999 54
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.94 E-value=5.1e-27 Score=198.89 Aligned_cols=118 Identities=10% Similarity=-0.059 Sum_probs=105.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCC---CeeeEEEEEEEecccceecCCCCCCccC
Q 022052 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEKWWVECVPGRVRWPSFGWFSCR 254 (303)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg---~tvt~eG~FEILSLsGTi~p~~g~~~~~ 254 (303)
++|++||++||||.++|.+||+++++..|+++++|+|++++||+++... .+++|+|+|||+||+||+.+++| .+
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg---~p 86 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---KP 86 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---EE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC---Cc
Confidence 6999999999999999999999988765556999999999999998655 27899999999999999998765 45
Q ss_pred CCeeEEEEeCCCCceeeceeEEe--eeEEEEeeecCCCCceeeccCCC
Q 022052 255 NAHGSFSSAGNCGQFYCGGEKVE--LKFFEIWAFFSTNAPYVKLRCTY 300 (303)
Q Consensus 255 ~~HlHISLAg~~GqViGGglvv~--~tv~vI~a~f~~n~~f~Rlp~~~ 300 (303)
+.|+||+++ .+|+|+|||++-. .++|+++..| .++.|+|++|++
T Consensus 87 ~~HlHi~l~-~~G~v~gGHl~~g~V~t~Evvi~~~-~~~~~~R~~D~e 132 (146)
T 2h6l_A 87 FCHIHVLLG-KDGEVYGGHLFSAEVFACEVFVLPL-SGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEEEE-EBTEEEEEEEEEEEEEEEEEEEEEC-BSCCCBEEECTT
T ss_pred eeeEEEEEC-CCCcEEeeecCCCEEEEEEEEEEEc-CCCcEEEeECCC
Confidence 799999999 9999999998655 7899999999 899999999985
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.93 E-value=3.3e-26 Score=195.35 Aligned_cols=118 Identities=10% Similarity=-0.064 Sum_probs=105.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC---eeeEEEEEEEecccceecCCCCCCccC
Q 022052 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEKWWVECVPGRVRWPSFGWFSCR 254 (303)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~---tvt~eG~FEILSLsGTi~p~~g~~~~~ 254 (303)
+.|++||++||||+++|.+||+++++..|+++++|++++|+||+++...+ .++|+|+|||+||+||+++++| .+
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG---~p 92 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE---QV 92 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT---EE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC---Cc
Confidence 68999999999999999999999998877779999999999999875432 7899999999999999998765 45
Q ss_pred CCeeEEEEeCCCCceeeceeE---EeeeEEEEeeecCCCCceeeccCCC
Q 022052 255 NAHGSFSSAGNCGQFYCGGEK---VELKFFEIWAFFSTNAPYVKLRCTY 300 (303)
Q Consensus 255 ~~HlHISLAg~~GqViGGglv---v~~tv~vI~a~f~~n~~f~Rlp~~~ 300 (303)
+.|+|++++|.+|+|+|||++ +..|+|+++..+ .. .|.|.+|++
T Consensus 93 ~~HlH~sl~~~~G~v~gGHl~~g~V~~t~Ei~i~~~-~~-~~~R~~D~~ 139 (149)
T 3htn_A 93 YLHLHITVGRSDYSALAGHLLSAIQNGAGEFVVEDY-SE-RISRTYNPD 139 (149)
T ss_dssp EEEEEEEEECTTSBEEEEEEEEEEEEEEEEEEEEEC-CS-CCEEEEETT
T ss_pred eEEEEEEEECCCCCEEeEEeCCCEEEEEEEEEEEEc-CC-eeEEeeCCc
Confidence 799999999999999999986 455799999999 67 899999974
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.88 E-value=1.3e-22 Score=172.67 Aligned_cols=117 Identities=9% Similarity=-0.053 Sum_probs=101.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC---eeeEEEEEEEecccceecCCCCCCccC
Q 022052 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEKWWVECVPGRVRWPSFGWFSCR 254 (303)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~---tvt~eG~FEILSLsGTi~p~~g~~~~~ 254 (303)
+-+++||++||||+++|.+||+++++..++++++|++++++||.++...+ ..+++ +|||+||+||+++++| .+
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG---~p 88 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG---KP 88 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT---EE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC---Cc
Confidence 35899999999999999999999998888889999999999999885432 56788 8999999999998765 56
Q ss_pred CCeeEEEEeCCCCceeeceeE---Ee-eeEEEEeeecCCCCceeeccCCC
Q 022052 255 NAHGSFSSAGNCGQFYCGGEK---VE-LKFFEIWAFFSTNAPYVKLRCTY 300 (303)
Q Consensus 255 ~~HlHISLAg~~GqViGGglv---v~-~tv~vI~a~f~~n~~f~Rlp~~~ 300 (303)
+.|+|++++|.+|+|+|||++ |. .|+|+++..+ . ..|.|.+|++
T Consensus 89 ~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~-~-~~~~R~~D~~ 136 (147)
T 3hwu_A 89 SIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY-P-QRLDRFVDPE 136 (147)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE-S-SCCBEEEETT
T ss_pred eEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc-C-CeEEEEECCc
Confidence 799999999999999999985 34 3778888877 4 5999999974
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.58 E-value=0.00095 Score=41.78 Aligned_cols=16 Identities=56% Similarity=0.881 Sum_probs=14.3
Q ss_pred cccCCCCCCCCCCCCc
Q 022052 150 SAKRHRGRPPGSGKKQ 165 (303)
Q Consensus 150 ~~kr~RGRP~GSk~k~ 165 (303)
..||+||||.|||||.
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCcCCCCCcCcccccC
Confidence 5699999999999984
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=77.04 E-value=0.7 Score=37.99 Aligned_cols=14 Identities=43% Similarity=0.871 Sum_probs=6.6
Q ss_pred cccCCCCCCCCCCC
Q 022052 103 KKKRGRPRKYTPDG 116 (303)
Q Consensus 103 KkKRGRPRKY~pdg 116 (303)
|+|+|||.||.++-
T Consensus 4 ~~k~GRPtk~t~e~ 17 (140)
T 4dyq_A 4 EPKAGRPSDYMPEV 17 (140)
T ss_dssp ------CCSCCTTH
T ss_pred CCCCCCCCCCCHHH
Confidence 89999999998763
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=70.46 E-value=4.9 Score=34.28 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=30.6
Q ss_pred eEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEec
Q 022052 204 TVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECV 239 (303)
Q Consensus 204 aicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILS 239 (303)
.+=|||.-|.+.|++++ ++ ++.+++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecC
Confidence 57799999999999999 34 678999999999999
No 10
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=51.42 E-value=17 Score=30.98 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=29.3
Q ss_pred eEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEec
Q 022052 204 TVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECV 239 (303)
Q Consensus 204 aicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILS 239 (303)
..=|||.-|+..|+++.. . ++.+++..|.||+.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~-~-~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIP-G-ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeC-C-CCcEEEEeEEEEecC
Confidence 577999999999999954 3 367899999999999
No 11
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=43.22 E-value=38 Score=26.47 Aligned_cols=44 Identities=7% Similarity=-0.192 Sum_probs=29.7
Q ss_pred eeeEEEcCCCCCCCeeeEE-----EEEEEecccceecCCCCCCccCCCeeEEEEeCCCCcee
Q 022052 214 ICNVTLRQPTMSGGTVTYE-----KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFY 270 (303)
Q Consensus 214 VSnVTLRqp~ssg~tvt~e-----G~FEILSLsGTi~p~~g~~~~~~~HlHISLAg~~GqVi 270 (303)
=+.|+|+| .+.+.|+ |+|||--|--+- . ..-|.|.+-+.+|++.
T Consensus 26 ~A~V~v~q----nG~~iy~~~VppGpF~I~dl~~~~---~------~Gdl~V~v~eadG~~~ 74 (90)
T 3fcg_A 26 QARVEVLR----DGYTVSNELVPSGPFELANLPLGG---G------SGELKVIIHESDGTKQ 74 (90)
T ss_dssp SEEEEEES----SSCEEEEEEECSEEEEECCCC------C------CEEEEEEEECTTSCEE
T ss_pred CcEEEEEE----CCEEEEEeEeCCCCeEEcCCcccC---C------ceeEEEEEEECCCCEE
Confidence 35788888 3445554 999996653211 1 2578899999999874
No 12
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=41.70 E-value=71 Score=28.85 Aligned_cols=96 Identities=8% Similarity=-0.040 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC-------eeeEE--EEEEEec--ccceecCCC-CCCccC
Q 022052 187 GEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG-------TVTYE--KWWVECV--PGRVRWPSF-GWFSCR 254 (303)
Q Consensus 187 GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~-------tvt~e--G~FEILS--LsGTi~p~~-g~~~~~ 254 (303)
-+++.+.|.+.. ...-.|-+-..|..+.|..|--....+ .+.-+ -.||=++ |.|.++|.- .+.+.+
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~ 173 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSA 173 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCS
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCc
Confidence 344555555544 445678889999999999997542221 01111 1222222 566677763 223334
Q ss_pred CCeeEEEEeCCCCceeeceeEEee--eEEEEeeec
Q 022052 255 NAHGSFSSAGNCGQFYCGGEKVEL--KFFEIWAFF 287 (303)
Q Consensus 255 ~~HlHISLAg~~GqViGGglvv~~--tv~vI~a~f 287 (303)
.-|+|+--.| +-+|||++--. .+.+-++.+
T Consensus 174 G~HlHFisdD---r~~GGHVldf~~~~~~~~~~~~ 205 (237)
T 1xv2_A 174 GFHIHFADDE---RAYGGHVLDFEVDDVVVEIQNF 205 (237)
T ss_dssp EEEEEEEETT---SSCEEEEEEEEEEEEEEEEEEC
T ss_pred eeEEEEEcCC---CCCCcceEEEEecceEEEEeec
Confidence 4566654433 45789987432 244555555
No 13
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=41.61 E-value=19 Score=29.95 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=25.5
Q ss_pred ecCCCcHHHHHHHHHhhCCceEEEEeec
Q 022052 184 VKAGEDISSKIFAFSQQGPRTVCILSAS 211 (303)
Q Consensus 184 V~~GEDV~~kI~~faqq~~raicILSa~ 211 (303)
+.+|++|.+.|.+-.++..+.|+|||-+
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 6799999999999999999999999853
No 14
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=31.13 E-value=26 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.1
Q ss_pred EecCCCcHHHHHHHHHhhCCceEEEEeec
Q 022052 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (303)
Q Consensus 183 rV~~GEDV~~kI~~faqq~~raicILSa~ 211 (303)
.+.+|+++.+.|.+-.++..+.|+|||-.
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 37899999999999999999999999864
No 15
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=29.23 E-value=30 Score=29.44 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=26.0
Q ss_pred EecCCCcHHHHHHHHHhhCCceEEEEeec
Q 022052 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (303)
Q Consensus 183 rV~~GEDV~~kI~~faqq~~raicILSa~ 211 (303)
.+.+|++|.+.|.+-.++..+.|+|||-+
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 37899999999999999888999999864
Done!