BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022053
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate
Isomerase
pdb|2ICK|A Chain A, Human Isopentenyl Diphophate Isomerase Complexed With
Substrate Analog
Length = 233
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 168/225 (74%), Gaps = 6/225 (2%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 15 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 72
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 73 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 132
Query: 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257
E L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+ Y YV++E+LKELL+KA
Sbjct: 133 EINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKA 192
Query: 258 DAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+GE +K++PWF+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 193 ASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 233
>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group
P212121
Length = 235
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 167/225 (74%), Gaps = 6/225 (2%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 17 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 74
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 75 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 134
Query: 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257
E L RI YKA SDG WGEHE+DY+L + +V++NP+P+E+ Y YV++E+LKELL+KA
Sbjct: 135 EINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKA 194
Query: 258 DAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+GE +K++PWF+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 195 ASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 235
>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
pdb|2I6K|B Chain B, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
Length = 235
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/224 (55%), Positives = 166/224 (74%), Gaps = 6/224 (2%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 17 LDKQQVQLLAE-XCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 74
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 75 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 134
Query: 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257
E L RI YKA SDG WGEHE+DY+L + +V++NP+P+E+ Y YV++E+LKELL+KA
Sbjct: 135 EINYLTRIHYKAQSDGIWGEHEIDYILLVRXNVTLNPDPNEIKSYCYVSKEELKELLKKA 194
Query: 258 DAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHK 301
+GE +K++PWF+++ FLFKWWD+L LN+ +D + I++
Sbjct: 195 ASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYR 234
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 157/233 (67%), Gaps = 7/233 (3%)
Query: 72 ATTDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFL 129
+ +D +D V RR + E+ I+VDEND+V+G + K NCHL E IE LLHRAFSV L
Sbjct: 19 SMSDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVL 77
Query: 130 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189
FN+K +L+QQRS TKVTFP +T++C SHPLY +EL E++A+GVR AAQR+L ELGI
Sbjct: 78 FNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGI 137
Query: 190 CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQ 249
E + ++ + +KA SD WGEHE+ YLL + ++V++NP+P E Y+++E+
Sbjct: 138 PGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEE 197
Query: 250 LKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
L ELL + GE +K++PW R + + FL++WW HL+ T +++ IH++
Sbjct: 198 LWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 246
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR- 103
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 104 -YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR- 103
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 104 -YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR- 103
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 104 -YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 29/185 (15%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 6 EEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSKKA 60
Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL-GRIL 206
+P VWTN+ C HP ++ E EE A R+ ELG V + + TP+
Sbjct: 61 WPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELG-----VEITDLTPVYPHFS 106
Query: 207 YKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEYKYVNREQL-KELLRKADAGEEGL 264
Y+A E+E+ +F R SV N +EV +Y++ + + K LL A
Sbjct: 107 YRATDPNGIVENEV-CPVFAARATSVLQVNSEEVXDYQWSEFKSVWKSLLATPWA----- 160
Query: 265 KLSPW 269
SPW
Sbjct: 161 -FSPW 164
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRF 104
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
PS E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 105 RATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRF 104
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
PS E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 105 RATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRA 104
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
PS E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 105 RATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +
Sbjct: 4 EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
P VWTN+ C HP ES +A R+ ELG+ E P + P R Y+
Sbjct: 59 PGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YR 105
Query: 209 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 268
A E+E+ + ++ N DEV +Y++ + L ++L DA SP
Sbjct: 106 ATDPSGIVENEVCPVFAARTTSALQINDDEVXDYQWCD---LADVLHGIDATP--WAFSP 160
Query: 269 W 269
W
Sbjct: 161 W 161
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR- 103
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 104 -YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR- 103
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 104 -YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 184 LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEY 242
LD L I A+ VP + I + P+ LD +L ++ SV E+
Sbjct: 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSG 103
Query: 243 KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTL 290
K L + + E+G+ L+P+ L D L + W +L+ L
Sbjct: 104 KVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL 151
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 258 DAGEEGLKL-SPWFRLVVDNFLFKWWDHLEKGTLNEVID 295
DA EE K+ +P FR +DN + W+DHL +++V+D
Sbjct: 627 DAMEEIKKIFTPEFRNRLDNII--WFDHLSTDVIHQVVD 663
>pdb|2FKB|A Chain A, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
pdb|2FKB|B Chain B, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
pdb|2FKB|C Chain C, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
Length = 180
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 82 QRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQR 141
QRRL + +V+E + V+ ++ E+ + L HRA + + + ++L+Q+R
Sbjct: 3 QRRLASTEWVDIVNEENEVIAQASR------EQXRAQCLRHRATYIVVHDGXGKILVQRR 56
Query: 142 SGTKVTFP 149
+ TK P
Sbjct: 57 TETKDFLP 64
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 117 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR 176
+ NL H A+ + E R GT V F + + + R ELIEE +
Sbjct: 407 AANLYHLAYEHV---ERPEGKFSGRKGTWVGFTV---DEVIQEAVKRARELIEEKNPALS 460
Query: 177 NAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNP 236
+ + ++ +++GI A + +++P +I++ +W D L F
Sbjct: 461 DEEKAEVAEKVGIGAIRYNLIKYSPDKKIIF------RWE----DVLNF----------E 500
Query: 237 DEVAEYKYVNREQLKELLRKADAGEEGLKLSP 268
E A Y + +LRKA+ EEG+K+ P
Sbjct: 501 GESAPYIQYAHARCSSILRKAE--EEGIKVDP 530
>pdb|3DUZ|A Chain A, Crystal Structure Of The Postfusion Form Of Baculovirus
Fusion Protein Gp64
Length = 487
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESL--------- 118
T GD T + +Q LM+E++ + ++ + + H NK N L + I S+
Sbjct: 272 TEGDTATKGDLMHIQEELMYENDLLKMNI-ELMHAHINKLNNMLHDLIVSVAKVDERLIG 330
Query: 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELI 168
NL++ + S + LL+ T P T+ C ++ +Y+E +
Sbjct: 331 NLMNNSVSSTFLSDDTFLLM------PCTNPPAHTSNCYNNSIYKEGRWV 374
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 172 ALGVRNAAQRKL-----LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL 224
A+GVR+ + K+ L E GI ++ V++ ++Y DG E E DY++
Sbjct: 49 AIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVI 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,707,667
Number of Sequences: 62578
Number of extensions: 314504
Number of successful extensions: 747
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 28
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)