BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022053
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata
GN=IPI2 PE=2 SV=1
Length = 309
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/274 (79%), Positives = 237/274 (86%), Gaps = 12/274 (4%)
Query: 30 LFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFED 89
+F SSSH + RVSS SS ++ S MGD TDAGMDAVQRRLMFED
Sbjct: 48 VFCSSSHLSVRVSSYH------------SSVAAKATTSAMGDTATDAGMDAVQRRLMFED 95
Query: 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149
ECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFP
Sbjct: 96 ECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFP 155
Query: 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 209
LVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKA
Sbjct: 156 LVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKA 215
Query: 210 PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 269
PSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPW
Sbjct: 216 PSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPW 275
Query: 270 FRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 303
FRLVV+NFLFKWWDH+EKGTL + DMKTIHKLT
Sbjct: 276 FRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309
>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata
GN=IPI1 PE=2 SV=1
Length = 235
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/234 (89%), Positives = 222/234 (94%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVF
Sbjct: 1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVF 60
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELG
Sbjct: 61 LFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELG 120
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRE 248
I AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYV R+
Sbjct: 121 IPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRD 180
Query: 249 QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E DMK+IHKL
Sbjct: 181 QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri
GN=IPI2 PE=3 SV=2
Length = 286
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/266 (82%), Positives = 237/266 (89%), Gaps = 11/266 (4%)
Query: 40 RVSSIRRPLSLRGASRSSSSSSSARAIST---MGDATTDAGMDAVQRRLMFEDECILVDE 96
R S I PLSLR S S R+I+T MG+A DAGMDAVQRRLMF+DECILVDE
Sbjct: 29 RSSRIAAPLSLR-------VSLSTRSIATSIAMGEAA-DAGMDAVQRRLMFDDECILVDE 80
Query: 97 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTC 156
DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTC
Sbjct: 81 VDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTC 140
Query: 157 CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 216
CSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWG
Sbjct: 141 CSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWG 200
Query: 217 EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 276
EHELDYLLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDN
Sbjct: 201 EHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDN 260
Query: 277 FLFKWWDHLEKGTLNEVIDMKTIHKL 302
FL KWWDH+EKGTL+E +DMK+IHKL
Sbjct: 261 FLPKWWDHVEKGTLSEAVDMKSIHKL 286
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/264 (81%), Positives = 232/264 (87%), Gaps = 7/264 (2%)
Query: 39 PRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEND 98
PR+S IR P A R+ S + A+ TM D + DAGMDAVQRRLMFEDECILVDEND
Sbjct: 35 PRLSPIRSP-----APRTQLSVRAFSAV-TMTD-SNDAGMDAVQRRLMFEDECILVDEND 87
Query: 99 RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158
RVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCS
Sbjct: 88 RVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCS 147
Query: 159 HPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
HPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEH
Sbjct: 148 HPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEH 207
Query: 219 ELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 278
E+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL
Sbjct: 208 EVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFL 267
Query: 279 FKWWDHLEKGTLNEVIDMKTIHKL 302
KWWDH+EKGT+ E DMKTIHKL
Sbjct: 268 MKWWDHVEKGTITEAADMKTIHKL 291
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/288 (77%), Positives = 242/288 (84%), Gaps = 8/288 (2%)
Query: 22 SSSFSKSRLFFSSSHFAPRVSSIRRPLSLRG----ASRSSSSSSSARAIST---MGDATT 74
+S K RLF S + R I P LR A S +S S R+I+T MG+A
Sbjct: 4 TSRLYKPRLFSLPSQHSFRALPILSP-PLRSSCIPAPLSVRASLSTRSIATSIAMGEAAA 62
Query: 75 DAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY 134
DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+
Sbjct: 63 DAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKF 122
Query: 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDV
Sbjct: 123 ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDV 182
Query: 195 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELL 254
PVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KYVNREQLKELL
Sbjct: 183 PVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELL 242
Query: 255 RKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
RKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct: 243 RKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 229/258 (88%), Gaps = 5/258 (1%)
Query: 46 RPLSLRGASRSSSSSSSARAIS-TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHE 104
RPLS S S + RA S T T DAGMDAVQRRLMFEDECILVDE DRVVGH+
Sbjct: 31 RPLS----SISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHD 86
Query: 105 NKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 164
+KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRE
Sbjct: 87 SKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRE 146
Query: 165 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL 224
SELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLL
Sbjct: 147 SELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLL 206
Query: 225 FIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH 284
FIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH
Sbjct: 207 FIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDH 266
Query: 285 LEKGTLNEVIDMKTIHKL 302
+EKGTL E IDMKTIHKL
Sbjct: 267 VEKGTLVEAIDMKTIHKL 284
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/256 (81%), Positives = 230/256 (89%), Gaps = 3/256 (1%)
Query: 47 PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
P+SL R S+ + + +TMG+ DAGMDAVQRRLMFEDECILVDEND+VVGHE+K
Sbjct: 35 PISL--TQRFSAKLTFSSQATTMGE-VVDAGMDAVQRRLMFEDECILVDENDKVVGHESK 91
Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
YNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESE
Sbjct: 92 YNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESE 151
Query: 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI 226
LI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI
Sbjct: 152 LIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFI 211
Query: 227 VRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE 286
+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+E
Sbjct: 212 IRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVE 271
Query: 287 KGTLNEVIDMKTIHKL 302
KG+L + DMKTIHKL
Sbjct: 272 KGSLKDAADMKTIHKL 287
>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1
PE=2 SV=2
Length = 227
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/234 (55%), Positives = 171/234 (73%), Gaps = 7/234 (2%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + +TD +D Q +LM E CILVDENDR +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFN++ +LLLQQRS K+TFP +TNTCCSHPL SEL E +A+GVR AAQR+L ELG
Sbjct: 58 LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELG 117
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRE 248
I E+VP +E L RI YKA SD WGEHE+DY+L + ++V++NP+P+E+ Y YV +E
Sbjct: 118 IPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKE 177
Query: 249 QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+L+EL+ KA GE +K++PWF+++ D FLFKWWD+L + LN +D + IH++
Sbjct: 178 ELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227
>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus
GN=IDI1 PE=2 SV=1
Length = 227
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 169/225 (75%), Gaps = 6/225 (2%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TN+CCSHPL EL E +A+GV+ AAQR+L ELGI E+V +
Sbjct: 67 LQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPN 126
Query: 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257
E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+ Y YV++E+LKEL++KA
Sbjct: 127 EMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKA 186
Query: 258 DAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+GE +KL+PWF+++VD FLFKWWD+L L++ +D + IH++
Sbjct: 187 ASGE--VKLTPWFKIIVDTFLFKWWDNL--NHLSQFVDHEKIHRM 227
>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1
PE=2 SV=1
Length = 227
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 168/225 (74%), Gaps = 6/225 (2%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TN+CCSHPL EL E NA+GV+ AA+R+L ELGI E+V ++
Sbjct: 67 LQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLN 126
Query: 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257
E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+ Y YV++E+++E+L+KA
Sbjct: 127 EMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKA 186
Query: 258 DAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+GE +KL+PWF+++ D FLFKWWD+L L+ +D + IH+L
Sbjct: 187 ASGE--IKLTPWFKIIADTFLFKWWDNL--NHLSPFVDHEKIHRL 227
>sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus
GN=Idi1 PE=2 SV=2
Length = 227
Score = 244 bits (622), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 167/227 (73%), Gaps = 6/227 (2%)
Query: 76 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYE 135
+ +D Q +L+ E CIL+DEND +G + K NCHL E I+ L+HRAFSVFLFN++ +
Sbjct: 7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENK 64
Query: 136 LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 195
LLLQQRS K+TFP +TN+CCSHPL EL E +A+GV+ AAQR+L ELGI E+V
Sbjct: 65 LLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVD 124
Query: 196 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR 255
++E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+ Y YV++E+LKE+L+
Sbjct: 125 LNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILK 184
Query: 256 KADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
K GE +KL+PWF+++ D FLFKWWD+L L+ +D + IH++
Sbjct: 185 KEARGE--IKLTPWFKIIADAFLFKWWDNL--NHLSPFVDHEKIHRM 227
>sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis
GN=IDI1 PE=2 SV=2
Length = 227
Score = 238 bits (607), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/234 (55%), Positives = 172/234 (73%), Gaps = 7/234 (2%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + TD +D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFN++ +LLLQQRS K+TFP +TNTCCSHPL EL E +ALGVR AAQR+L ELG
Sbjct: 58 LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELG 117
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRE 248
I E+VP +E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+ + YV++E
Sbjct: 118 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSKE 177
Query: 249 QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+LKELL+KA GE +K++PWF+++ + FLFKWWD+L LN+ +D + IH++
Sbjct: 178 ELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNL--NHLNQFVDHEKIHRM 227
>sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1
PE=1 SV=2
Length = 227
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 168/225 (74%), Gaps = 6/225 (2%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 67 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 126
Query: 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257
E L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+ Y YV++E+LKELL+KA
Sbjct: 127 EINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKA 186
Query: 258 DAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+GE +K++PWF+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 187 ASGE--IKITPWFKIIAATFLFKWWDNL--NHLNQFVDHEKIYRM 227
>sp|Q5R8R6|IDI1_PONAB Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1
PE=2 SV=2
Length = 227
Score = 234 bits (596), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/234 (54%), Positives = 171/234 (73%), Gaps = 7/234 (2%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + TD +D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFN++ +LLLQQRS K+T P +TNTCCSHPL EL E +ALGVR AAQR+L ELG
Sbjct: 58 LFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELG 117
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRE 248
I E+VP +E L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+ Y YV++E
Sbjct: 118 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKE 177
Query: 249 QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
+LKELL+KA +GE +K++PWF+++ + FLFKWWD+L LN+ +D + I+++
Sbjct: 178 ELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNL--NHLNQFVDHEKIYRI 227
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 141/225 (62%), Gaps = 13/225 (5%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M D Q RLM E+ CI+VDEND + + K CHLME I LLHRAFS+F
Sbjct: 3 MSSQQEKKDYDEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMF 60
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLD 185
+F+ + LLLQQR+ K+TFP +WTNTCCSHPL E + E GV+NAAQRKL
Sbjct: 61 IFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFH 120
Query: 186 ELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 245
ELGI A+ +P D+F L RI Y APS G WGEHE+DY+LF V ++ NP+EV YKYV
Sbjct: 121 ELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYV 180
Query: 246 NREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW---DHLEK 287
E+LKE+ G +PWF+L+ ++F+FKWW DH K
Sbjct: 181 TMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 220
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 144/232 (62%), Gaps = 17/232 (7%)
Query: 79 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESL-NLLHRAFSVFLFN-SKYEL 136
D Q RLM E+ CILV+ +D G +K CHLM I + +LLHRAFSVFLF S L
Sbjct: 23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGAL 81
Query: 137 LLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 196
LLQ+R+ K+TFP +WTNTCCSHPL + E+ EEN +GVR AA RKL ELG+ P
Sbjct: 82 LLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPP 141
Query: 197 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 256
D FT L RI Y APSDG WGEHE+DY+LF NP+EV++ +YV + +L+ +
Sbjct: 142 DSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE- 200
Query: 257 ADAGEEGLKLSPWFRLVVDNFLFKWWDHL-----EKGTLNEVIDMKTIHKLT 303
+E +PWF+L+ +FLF WWD L EKG +D K++ L+
Sbjct: 201 ----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGE----VDAKSLEDLS 244
>sp|Q9NH02|IDI_DICDI Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum
GN=ipi PE=2 SV=1
Length = 239
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 151/213 (70%), Gaps = 8/213 (3%)
Query: 77 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYEL 136
G + +Q LM E ECI+VD +D+ + +K HLM I + LLHRAFS+FLFN + +L
Sbjct: 15 GHNEIQIELMKE-ECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKL 72
Query: 137 LLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVP 195
LLQQR+ K+TFP WTNT CSHPL+ SEL+EENA GV+ AA+RKL ELG+ + V
Sbjct: 73 LLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVN 132
Query: 196 VDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKE 252
+D+FT + +I YK+ S D +WGEHE+D++L + +D +++N P+EV +YKYV++E+L +
Sbjct: 133 IDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQ 192
Query: 253 LLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL 285
L + D G+ +K++PWFRL+ N L WW++L
Sbjct: 193 LFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL 223
>sp|Q8BFZ6|IDI2_MOUSE Isopentenyl-diphosphate Delta-isomerase 2 OS=Mus musculus GN=Idi2
PE=2 SV=1
Length = 227
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 137/200 (68%), Gaps = 3/200 (1%)
Query: 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 146
E+ CI++D+ D+++G + K NCHLME I LLHRAFSV LFN K ELL+QQR+ K
Sbjct: 17 LEEMCIVIDKQDQIIGADTKKNCHLMENINK-GLLHRAFSVVLFNMKNELLVQQRADAKY 75
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 206
TFP +T++C SHPLY EL E++ALGVR AA R+L ELGI + + + + + R
Sbjct: 76 TFPGHFTDSCSSHPLYVPEELEEKDALGVRRAALRRLQAELGISQDQISIKDIIFMTRKY 135
Query: 207 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKL 266
+K SD WGEHE+ YLL + +D+ +NP+ EV Y++++ ++ELL + GEE K+
Sbjct: 136 HKCQSDAIWGEHEIGYLLLVRKDLMLNPDTREVRRCCYMSQKDVQELLDREARGEE--KI 193
Query: 267 SPWFRLVVDNFLFKWWDHLE 286
+PWFR +V++FLF WW HLE
Sbjct: 194 TPWFRSMVEDFLFSWWPHLE 213
>sp|Q9BXS1|IDI2_HUMAN Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2
PE=1 SV=1
Length = 227
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 156/231 (67%), Gaps = 7/231 (3%)
Query: 74 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN 131
+D +D V RR + E+ I+VDEND+V+G + K NCHL E IE LLHRAFSV LFN
Sbjct: 2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFN 60
Query: 132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191
+K +L+QQRS TKVTFP +T++C SHPLY +EL E++A+GVR AAQR+L ELGI
Sbjct: 61 TKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPG 120
Query: 192 EDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLK 251
E + ++ + +KA SD WGEHE+ YLL + ++V++NP+P E Y+++E+L
Sbjct: 121 EQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELW 180
Query: 252 ELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302
ELL + GE +K++PW R + + FL++WW HL+ T +++ IH++
Sbjct: 181 ELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 227
>sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2
Length = 288
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 161/266 (60%), Gaps = 25/266 (9%)
Query: 47 PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
PL R +RSS +S+ T +G D Q +LM E+ CI++D +D +G K
Sbjct: 37 PLQQRPNTRSSETSNDESG------ETCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTK 89
Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
CHLME IE LLHRAFSVF+FN + ELLLQQR+ K+TFP +WTNTCCSHPL + E
Sbjct: 90 KVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDE 148
Query: 167 L-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHEL 220
L +++ G AA RKL ELGI ++ +F L RI Y APS+ WGEHE+
Sbjct: 149 LGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEI 208
Query: 221 DYLLFI----VRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 276
DY+LF +++VNPN +EV ++K+V+ LK + + K +PWF+++ +N
Sbjct: 209 DYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICEN 263
Query: 277 FLFKWWDHLEKGTLNEVIDMKTIHKL 302
+LF WW+ L+ L+EV + + IH++
Sbjct: 264 YLFNWWEQLDD--LSEVENDRQIHRM 287
>sp|Q5YYB6|IDI_NOCFA Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica
(strain IFM 10152) GN=idi PE=3 SV=1
Length = 175
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 92/185 (49%), Gaps = 28/185 (15%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDE R VG C + E LHRAFSV LF++ +LLQQR+ K FPL+W
Sbjct: 5 LVDEAGRAVG-----ACPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLW 59
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 212
NTCC HP ES V AA +L +ELG+ A T +G Y+A +D
Sbjct: 60 ANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-AD 103
Query: 213 GKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 270
G EHE D++L D + +P+P EVA ++V +++ L E +PW
Sbjct: 104 TATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEVRAKL-----AAEPAAYTPWL 158
Query: 271 RLVVD 275
V++
Sbjct: 159 AEVLE 163
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 28/193 (14%)
Query: 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149
E +LVDEND+ G K H+ + LHRA +V++FNS+ +LLLQQR+ K
Sbjct: 5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSG 58
Query: 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYK 208
+W+NTCCSHP E L AA R+L +E+G+ CA TP+ + Y+
Sbjct: 59 GLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYR 102
Query: 209 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 268
D EHEL ++ F V D NPDEV+ Y+Y + + E+ ++ E + +
Sbjct: 103 LQLDNGLIEHELGHVYFGVTDDVPQINPDEVSSYEY---QSIDEITQRMMMTPE--QFTA 157
Query: 269 WFRLVVDNFLFKW 281
WF+L W
Sbjct: 158 WFQLTFARIPDYW 170
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
ILVD +D +G ++K H LLHRAFS+F+F+S+ LLLQQR+ +K +
Sbjct: 6 ILVDADDNAIGSQSKTRVH------QQGLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGL 59
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+CC HP + ES L AAQR+L +E+G AE V FT Y+A
Sbjct: 60 WTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAV 104
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGLKLSPWF 270
G EHE D++ + D P+E + + + +QL E R + K + WF
Sbjct: 105 PGDLIEHEFDHIYVGLFDGKPQGAPEEAHSWSWTDIQQLTDETTRNPE------KFTVWF 158
Query: 271 RLVVDNF 277
++ +
Sbjct: 159 LTIMKDL 165
>sp|B1VTW2|IDI_STRGG Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus
subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi
PE=3 SV=1
Length = 197
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 66 ISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAF 125
+ T T + + +M E LVDEN +G K H ++ LHRAF
Sbjct: 1 MPTTPATATHSSSNGTAEAIMLE----LVDENGTTIGTAEKLAAH-----QAPGQLHRAF 51
Query: 126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLD 185
SVFLF+ + LLLQ+R+ K P VW+NTCC HP E+ AA R+ +
Sbjct: 52 SVFLFDEQGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHE 102
Query: 186 ELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDEVAEYK 243
ELG+ G + Y P D G E E ++L + + P+P+EV E
Sbjct: 103 ELGLSP-----SLLAEAGTVRYNHP-DPASGLVEQEFNHLFVGLAQTAPKPDPEEVGETA 156
Query: 244 YVNREQLKELLRKADAGEEGLKLSPWFRLVVD 275
+V +L E KA S WF V+D
Sbjct: 157 FVTAAELAERHAKA-------PFSAWFMTVLD 181
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 146
ED+ ILVDE+D VG K H LHRA S+F+F+S L+LQ+R+ K
Sbjct: 1 MEDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKY 54
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 206
+W+NTCCSHP EE+A +AA+R+L +E+G+ E F +
Sbjct: 55 HSGGLWSNTCCSHPRPN-----EESA----DAARRRLREEMGVDCELKKAFSF------V 99
Query: 207 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 256
Y+ EHE D++ F D NPDE ++K+V+ +L +RK
Sbjct: 100 YRTKFGSGLIEHEFDHVFFGNHDGRPVLNPDEADDWKWVDLTELTVDVRK 149
>sp|A9AST0|IDI_BURM1 Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=idi PE=3 SV=1
Length = 176
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 26/189 (13%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
E+ ILVD +DR +G K H LLHRAFS+F+F+S LLLQQR+ K
Sbjct: 2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYH 55
Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 207
+W+NTCC HP RE+ + +A +R+L +E+G E PVD ++Y
Sbjct: 56 SGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVDA------LVY 100
Query: 208 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 267
+A + EHE ++ D +V P+ EVA +++++ L E + +E +
Sbjct: 101 RARFENDLIEHEFVHIHVGRFDGTVAPDFAEVAAWRWIDVPTLLEWM-----ADEPSAFT 155
Query: 268 PWFRLVVDN 276
WF +++
Sbjct: 156 VWFHCMIER 164
>sp|Q9X7Q6|IDI_STRCO Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=idi PE=3 SV=1
Length = 197
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDEN +G K + H + LHRAFSVFLF+ + LL+QQR+ K P VW
Sbjct: 24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVW 78
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 212
+NTCC HP E+ AA R+ +ELG+ G + Y P D
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTFEELGVSP-----SLLAEAGTVRYNHP-D 123
Query: 213 GKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 270
G E E ++L + + P+P+EVA +V+ +L E R A S WF
Sbjct: 124 PASGLVEQEYNHLFVGLVQAELRPDPEEVAGTAFVSPAELTE--RHAQD-----TFSAWF 176
Query: 271 RLVVD 275
V+D
Sbjct: 177 MTVLD 181
>sp|Q7N1V4|IDI1_PHOLL Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi1 PE=3
SV=1
Length = 176
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 23/180 (12%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+LVDEND VG NK + HL + + LHRAFS F+ NSK E+ +QQR+ +K+ +P
Sbjct: 5 VLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGY 59
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
W+N+ CSHP E + +A R+ +ELGI + P L + YK
Sbjct: 60 WSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP----KFLYKFQYKEKY 106
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
EHEL ++ + D NP EV+ ++N + ++E + + +PWF+
Sbjct: 107 KDVGYEHELCHVFVVFTDTPPTENPKEVSAGFFINIKDVQEYIHNNEEF-----CTPWFK 161
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+LVD++D +G K + H +LHRAFS+F+F++K LLLQ+R+ TK +
Sbjct: 6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGL 59
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+CC HP R E +E AA R+L +E+G D P+ + + +Y A
Sbjct: 60 WTNSCCGHP--RVGEALEA-------AAHRRLGEEMGF---DCPLKKVSSF---IYHAIL 104
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
E+E D++ D N DEV++YK+VN +L+ L+ A + WF+
Sbjct: 105 PNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWVNLLKLRALINNAPD-----VYTVWFK 159
Query: 272 LVVDNFLFK 280
+++ ++
Sbjct: 160 KIINGLSYQ 168
>sp|A1WXH5|IDI_HALHL Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=idi PE=3 SV=1
Length = 175
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ ++VD + VG E K H LH AF VF+FN + ELLLQ+R+ +K F
Sbjct: 2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHF 56
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
+W+NTCC HP R E GV AA+R+L +E G PV +FT Y
Sbjct: 57 SGLWSNTCCGHP--RPGE-------GVTEAAERRLGEEFGFVTRLHPVAQFT------YH 101
Query: 209 APSDGKWGEHELDYL-LFIVRDVSVNPNPD--EVAEYKYVNREQLKELLRKADAGEEGLK 265
A D G E +Y + I R + P PD E+ +++ L +AD + L+
Sbjct: 102 A-EDHHTGLAEYEYAHVLIGRAPTDQPAPDPLEIGAWEWA-----APLRIQADTQQYPLR 155
Query: 266 LSPWFRLVVDN 276
+PWFR ++
Sbjct: 156 YTPWFRRLIQE 166
>sp|Q6LUX5|IDI_PHOPR Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum
GN=idi PE=3 SV=1
Length = 180
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 28/194 (14%)
Query: 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLF---NSKYELLLQQR 141
++ E++ +LVD+ R +G + K H LH AFSV L+ E L+QQR
Sbjct: 1 MIIEEQVVLVDQQGRALGLQEKMQAH------RDGALHLAFSVLLYRETTQGIEFLMQQR 54
Query: 142 SGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201
+ K +WTNTCCSHP R+ E +E+ L R+L +E+GI V ++
Sbjct: 55 ALGKYHSGGLWTNTCCSHP--RQGETLEQAGL-------RRLTEEMGI----VGLESLDD 101
Query: 202 LGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQLKELLRKADAG 260
+ +Y+A D + EHE D++L ++++ PN +EV Y++ ++ L+ L AD
Sbjct: 102 IASFVYRAELDNQLIEHEWDHVLIANGTELAIIPNSEEVKSYRWWSKADLE--LGLADTP 159
Query: 261 EEGLKLSPWFRLVV 274
E + WF V+
Sbjct: 160 E---LFTAWFPQVL 170
>sp|Q82MJ7|IDI_STRAW Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=idi PE=3 SV=1
Length = 197
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDEN +G K H + LHRAFSVFLF+ + LLLQQR+ K P VW
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVW 78
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-S 211
+NTCC HP E+ AA R+ +ELG+ G + Y P
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTHEELGVSP-----SLLAEAGTVRYNHPDP 124
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
D E E ++L + + P+ +E+ + +V +L E K S WF
Sbjct: 125 DSGLVEQEFNHLFVGLVQSPLRPDAEEIGDTAFVTAAELAERHAKD-------PFSSWFM 177
Query: 272 LVVD 275
V+D
Sbjct: 178 TVLD 181
>sp|Q5P011|IDI1_AROAE Isopentenyl-diphosphate Delta-isomerase 1 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi1 PE=3 SV=1
Length = 177
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 92/193 (47%), Gaps = 28/193 (14%)
Query: 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 146
ED+ ILVDEND +G E K H LHRA S+F+F+S LLLQ+R+ +K
Sbjct: 1 MEDQVILVDENDTEIGVEGKMIAH------RSGSLHRAISIFIFDSADRLLLQKRAASKY 54
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRI 205
+W+NTCCSHP AA+R+L +E+GI C DV
Sbjct: 55 HSAGLWSNTCCSHP---------RPREECARAARRRLREEMGIACELDVKFG-------F 98
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
+Y+A E+E D++ F D PNPDE ++K+V+ L +AD E
Sbjct: 99 VYRAVLTNHLIENEFDHVFFGRHDGDPVPNPDEAEDWKWVDLAWL-----RADLNERPHA 153
Query: 266 LSPWFRLVVDNFL 278
S W +D +
Sbjct: 154 YSFWLEACIDRVI 166
>sp|B5F9P6|IDI_VIBFM Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
MJ11) GN=idi PE=3 SV=1
Length = 181
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKV 146
+LV+E +G MEK+E+ LLH AFSV L+ E LLQ+R+ K
Sbjct: 6 VLVNEQGDAIG--------TMEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKY 57
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 206
W+NTCCSHP E+ V A R+L +E+GI V ++F LG +
Sbjct: 58 HSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFI 106
Query: 207 YKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGL 264
Y+A + EHE DY+L DVS NP+EV++ ++ + + KEL D
Sbjct: 107 YQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKELKANPDT----- 161
Query: 265 KLSPWFRLVVDNFL 278
S WF V L
Sbjct: 162 -FSVWFPTVYKKVL 174
>sp|A1T5G2|IDI_MYCVP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=idi PE=3 SV=1
Length = 181
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 26/179 (14%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+L+D++ R +G K H + LH AFS +LF+ +LL +R+ K TFP +
Sbjct: 11 VLLDDDGRTIGSAPKAQVH-----HASTPLHLAFSCYLFDDAGRVLLTRRAVHKRTFPGI 65
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTNTCC HP E+ +++A R++ +ELG+ D+ L Y+A +
Sbjct: 66 WTNTCCGHPAPGEA---------LQDAVTRRVREELGVGITDL----RCVLPDFRYRAVA 112
Query: 212 DGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 269
E+E+ +F R V V+P+ DEVA++ +V + ++ A E G +SPW
Sbjct: 113 ADGVVENEV-CPVFCGRAVGQVHPDRDEVADHVWVPWQHMRA------AAEFGWAISPW 164
>sp|Q5E7U8|IDI_VIBF1 Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=idi PE=3 SV=1
Length = 181
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKV 146
+LV+E +G MEK+E+ LLH AFSV L+ E LLQ+R+ K
Sbjct: 6 VLVNEQGDAIG--------TMEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKY 57
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 206
W+NTCCSHP E+ V A R+L +E+GI V ++F LG +
Sbjct: 58 HSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFI 106
Query: 207 YKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGL 264
Y+A + EHE DY+L DVS NP+EV++ ++ + + KE+ D
Sbjct: 107 YQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKEMKANPDT----- 161
Query: 265 KLSPWFRLVVDNFL 278
S WF V L
Sbjct: 162 -FSVWFPTVYKKVL 174
>sp|B5XUF5|IDI_KLEP3 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
(strain 342) GN=idi PE=3 SV=1
Length = 184
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 27/193 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL+DE D+ G KY H ++ LH AFS +LFN + + L+ +RS K
Sbjct: 1 MAGEHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLVTRRSLGK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGR 204
+P VWTN+ C HP ++ E E+ A R+ ELG+ D+ P+ P R
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEIADIAPIH---PAFR 103
Query: 205 ILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEG 263
Y+A + E+E+ ++ R VS V PN DEV +Y++V+ E + L
Sbjct: 104 --YRAVAPNGIVENEV-CPVYAARVVSQVQPNDDEVMDYQWVDLETMLSALAATP----- 155
Query: 264 LKLSPWFRLVVDN 276
SPW L +N
Sbjct: 156 WAFSPWMVLEAEN 168
>sp|A6TDP3|IDI_KLEP7 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=idi PE=3 SV=1
Length = 184
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 27/193 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL+DE D+ G KY H + LH AFS +LFN + +LL+ +RS K
Sbjct: 1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGR 204
+P VWTN+ C HP ++ E E+ A R+ ELG+ D+ PV P R
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDIAPVH---PAFR 103
Query: 205 ILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEG 263
Y+A + E+E+ ++ R VS V PN DEV +Y++V+ + L
Sbjct: 104 --YRAVAPNGIVENEV-CPVYAARVVSEVQPNDDEVMDYQWVDLATMLSALAATP----- 155
Query: 264 LKLSPWFRLVVDN 276
SPW L +N
Sbjct: 156 WAFSPWMVLEAEN 168
>sp|A4FK76|IDI_SACEN Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=idi PE=3 SV=1
Length = 194
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
++ +L++++ + +G +K H ++ LH AFS ++FN + +LLL QR+ K T+
Sbjct: 2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTW 56
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
P VWTNTCC HP +E+ + A R+L +ELG+ D+ + L R Y+
Sbjct: 57 PGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTLV----LPRFRYR 103
Query: 209 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGLKLS 267
A E+E+ + D PN +EVA + + E+L AG +S
Sbjct: 104 AVMGNGVVENEICPVFAAFTDDEPAPNREEVAGTAWADWSGFSAEVL----AGT--TDIS 157
Query: 268 PWFRLVVDNFL 278
PW R V +
Sbjct: 158 PWCRQQVAELV 168
>sp|C1AP18|IDI_MYCBT Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi
PE=3 SV=1
Length = 176
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T+
Sbjct: 12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTW 66
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y+
Sbjct: 67 PAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--YR 113
Query: 209 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 268
A E+E+ + + D PN DEV ++++ EQ +R AG +SP
Sbjct: 114 AAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVSP 169
Query: 269 WFR 271
W R
Sbjct: 170 WCR 172
>sp|A1KJG2|IDI_MYCBP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1
Length = 176
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T+
Sbjct: 12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTW 66
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y+
Sbjct: 67 PAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--YR 113
Query: 209 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 268
A E+E+ + + D PN DEV ++++ EQ +R AG +SP
Sbjct: 114 AAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVSP 169
Query: 269 WFR 271
W R
Sbjct: 170 WCR 172
>sp|A5CV36|IDI_CLAM3 Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
GN=idi PE=3 SV=1
Length = 194
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+L+D++ +G K H + LH AFS +F+++ +L+ +R+ K+T+P V
Sbjct: 9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAQGRILVTRRAIGKLTWPGV 63
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+ C HP E +R A R+ ELG+ E V E L Y+A
Sbjct: 64 WTNSFCGHPAPDED---------MREAVHRRAEQELGLELESV---ELV-LPDFRYRATD 110
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
E+E+ + V V+P P+EV EY++V+ EQL + SPW
Sbjct: 111 AAGVVENEICPVFRAVAASPVDPRPEEVGEYQWVDPEQLIPAV-----AHTPWAFSPWLT 165
Query: 272 L 272
L
Sbjct: 166 L 166
>sp|P72002|IDI_MYCTU Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis GN=idi PE=3 SV=1
Length = 203
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T+P V
Sbjct: 15 VLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAV 69
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+CC HPL ES + A +R+L ELG+ + VD P R Y+A
Sbjct: 70 WTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--YRAAM 116
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
E+E+ + + D PN DEV ++++ EQ +R AG +SPW R
Sbjct: 117 ADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|A5U3A5|IDI_MYCTA Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3
SV=1
Length = 203
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T+P V
Sbjct: 15 VLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAV 69
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+CC HPL ES + A +R+L ELG+ + VD P R Y+A
Sbjct: 70 WTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--YRAAM 116
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
E+E+ + + D PN DEV ++++ EQ +R AG +SPW R
Sbjct: 117 ADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|B0RIB7|IDI_CLAMS Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter
michiganensis subsp. sepedonicus (strain ATCC 33113 /
JCM 9667) GN=idi PE=3 SV=1
Length = 190
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+L+D++ +G K H + LH AFS +F+++ +L+ +R+ K+T+P V
Sbjct: 9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAEGRILVTRRAIGKLTWPGV 63
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+ C HP E L A R+ ELG+ E V E L Y+A
Sbjct: 64 WTNSFCGHPAPDEDML---------EAVHRRAEQELGLTLESV---ELV-LPDFRYRATD 110
Query: 212 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271
E+E+ + V V+P P+EV EY++V+ EQL + SPW
Sbjct: 111 AAGVVENEICPVFRAVAATPVDPRPEEVGEYQWVDPEQLIPAV-----AHTPWAFSPWLT 165
Query: 272 L 272
L
Sbjct: 166 L 166
>sp|A4WE41|IDI_ENT38 Isopentenyl-diphosphate Delta-isomerase OS=Enterobacter sp. (strain
638) GN=idi PE=3 SV=1
Length = 183
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGT 144
+ ++ ILV++ VVG + KY H S LH AFS +LFN + + L+ +R+ +
Sbjct: 1 MSIQEHVILVNDQGEVVGTQEKYAAHT-----SHTSLHLAFSSWLFNDRGQCLVTRRALS 55
Query: 145 KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG- 203
K+ +P VWTN+ C HP E+ A R+ E+G V + + TP+
Sbjct: 56 KIAWPGVWTNSVCGHPQIGET---------TEQAIARRCRFEVG-----VEIAQLTPIAA 101
Query: 204 --RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGE 261
R PS E + IV + V NPDEV +Y++V +L LLR +A
Sbjct: 102 DFRYCEIDPSGIVENEICPVFAAQIVSPLKV--NPDEVMDYQWV---ELTSLLRALEATP 156
Query: 262 EGLKLSPWF 270
SPW
Sbjct: 157 --WAFSPWM 163
>sp|B7UHT8|IDI_ECO27 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=idi PE=3 SV=1
Length = 182
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LLH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TLLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP +L E NA A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHP-----QLGESNA----EAVIRRCRYELGV--EITPPESIYPGFR- 103
Query: 206 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A E+E+ + + ++ N DEV +Y++ + L +LR DA
Sbjct: 104 -YRATDPNGIVENEVCPVFAALTTSALQINDDEVMDYQWCD---LAAVLRGIDATP--WA 157
Query: 266 LSPWFRLVVDN 276
SPW + N
Sbjct: 158 FSPWMVMQATN 168
>sp|Q0RBQ7|IDI_FRAAA Isopentenyl-diphosphate Delta-isomerase OS=Frankia alni (strain
ACN14a) GN=idi PE=3 SV=1
Length = 194
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 25/184 (13%)
Query: 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 146
+DE +L+D + R G + H ++ LH AFS +LF++ LL+ +R+ K
Sbjct: 12 VDDEVVLLDPDRRPCGTAPRLAVHGLD-----TPLHLAFSSYLFDAAGRLLVTRRALGKR 66
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 206
T+P VWTN+CC HP R E I AL V +R++ EL + D+ L
Sbjct: 67 TWPGVWTNSCCGHP--RPGEDI---ALAV----ERRVDQELRLALTDL----HCALPDFA 113
Query: 207 YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 265
Y+A + E+E+ +++ R V +P+P EV E+++V+ E ++ A
Sbjct: 114 YRATAADGLVENEV-CPVYVARAVGDPDPDPAEVVEWRWVDWESYRQAALAAP-----WA 167
Query: 266 LSPW 269
LSPW
Sbjct: 168 LSPW 171
>sp|Q7VEU0|IDI_MYCBO Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=idi PE=3 SV=1
Length = 176
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 22/183 (12%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ +L+++ G +K H + LH AFS ++ + +LL+ +R+ TK T+
Sbjct: 12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVSDLHDQLLITRRAATKRTW 66
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y+
Sbjct: 67 PAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--YR 113
Query: 209 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 268
A E+E+ + + D PN DEV ++++ EQ +R AG +SP
Sbjct: 114 AAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVSP 169
Query: 269 WFR 271
W R
Sbjct: 170 WCR 172
>sp|A8LQ20|IDI_DINSH Isopentenyl-diphosphate Delta-isomerase OS=Dinoroseobacter shibae
(strain DFL 12) GN=idi PE=3 SV=1
Length = 176
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 28/159 (17%)
Query: 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 178
L H+A SVF+ E L+Q+R+ K P +W NTCC+HPL+ ES +
Sbjct: 25 GLRHKAVSVFVMRGP-ETLIQRRALDKYHTPGLWANTCCTHPLWDESPA---------DC 74
Query: 179 AQRKLLDELGICAEDVPVDEFTPL--GRILYKAPSDGKWGEHELDYLLFIVR---DVSVN 233
A R+L +ELGI P RI Y+A EHE+ LFI ++ V
Sbjct: 75 AVRRLREELGITG-------LYPAHRDRIEYRADVGNGLIEHEV-VDLFIAEAPANLKVA 126
Query: 234 PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 272
PNP+EVAE K+V+ +L +++ + +PW R+
Sbjct: 127 PNPEEVAEVKWVDLYELNAQVKRRPE-----RYTPWLRI 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,795,013
Number of Sequences: 539616
Number of extensions: 4535475
Number of successful extensions: 15386
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 14321
Number of HSP's gapped (non-prelim): 783
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)