Query 022053
Match_columns 303
No_of_seqs 329 out of 2390
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0142 Isopentenyl pyrophosph 100.0 5.4E-63 1.2E-67 433.8 13.5 224 70-302 2-225 (225)
2 PLN02552 isopentenyl-diphospha 100.0 8.6E-52 1.9E-56 380.7 23.5 230 68-303 2-247 (247)
3 COG1443 Idi Isopentenyldiphosp 100.0 1.8E-43 3.8E-48 305.3 11.8 170 88-277 3-172 (185)
4 PRK03759 isopentenyl-diphospha 100.0 3.1E-33 6.7E-38 246.6 18.3 170 85-277 2-171 (184)
5 cd02885 IPP_Isomerase Isopente 100.0 2.4E-33 5.2E-38 242.8 16.8 163 88-274 1-164 (165)
6 cd03676 Nudix_hydrolase_3 Memb 100.0 1.4E-32 3E-37 241.0 18.3 170 87-280 3-178 (180)
7 TIGR02150 IPP_isom_1 isopenten 100.0 2.3E-32 5.1E-37 235.6 17.8 157 91-273 1-157 (158)
8 PLN02791 Nudix hydrolase homol 100.0 4.5E-32 9.7E-37 281.2 18.3 171 86-279 1-188 (770)
9 PRK15393 NUDIX hydrolase YfcD; 100.0 3.1E-29 6.8E-34 220.8 17.6 164 81-278 2-165 (180)
10 cd04692 Nudix_Hydrolase_33 Mem 99.9 5E-26 1.1E-30 192.2 15.1 135 121-272 1-141 (144)
11 cd04697 Nudix_Hydrolase_38 Mem 99.9 2E-22 4.2E-27 166.6 14.1 116 123-257 1-116 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.9 1.9E-22 4E-27 166.2 12.6 124 123-272 1-125 (127)
13 PRK15472 nucleoside triphospha 99.8 1.1E-19 2.3E-24 152.7 14.2 120 121-253 2-125 (141)
14 PF00293 NUDIX: NUDIX domain; 99.8 2.1E-19 4.7E-24 146.5 11.8 120 121-257 1-123 (134)
15 PLN02839 nudix hydrolase 99.8 7.2E-19 1.6E-23 169.0 16.4 170 87-280 173-348 (372)
16 cd04694 Nudix_Hydrolase_35 Mem 99.8 1.9E-18 4.2E-23 147.1 15.3 125 123-258 2-136 (143)
17 PRK09438 nudB dihydroneopterin 99.8 3.1E-18 6.6E-23 144.9 14.4 130 121-279 6-144 (148)
18 cd04682 Nudix_Hydrolase_23 Mem 99.8 1.5E-18 3.3E-23 142.1 12.1 111 122-253 1-114 (122)
19 cd04681 Nudix_Hydrolase_22 Mem 99.8 6.7E-18 1.5E-22 139.0 13.2 110 124-251 3-113 (130)
20 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1.7E-17 3.8E-22 137.9 15.3 115 122-257 2-119 (137)
21 cd03426 CoAse Coenzyme A pyrop 99.8 5.6E-18 1.2E-22 145.7 12.2 112 122-253 2-118 (157)
22 cd03673 Ap6A_hydrolase Diadeno 99.8 2.7E-17 5.9E-22 134.5 15.6 124 123-278 2-130 (131)
23 PRK15434 GDP-mannose mannosyl 99.8 2.5E-17 5.4E-22 142.9 15.5 119 120-253 15-137 (159)
24 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.9E-17 4.1E-22 135.8 13.9 114 122-255 2-117 (125)
25 cd04696 Nudix_Hydrolase_37 Mem 99.8 2.5E-17 5.3E-22 135.3 14.5 111 123-253 3-114 (125)
26 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.7E-17 3.7E-22 136.8 13.4 113 123-256 2-121 (129)
27 cd03430 GDPMH GDP-mannose glyc 99.8 2.6E-17 5.6E-22 139.7 14.5 117 122-253 12-132 (144)
28 cd04684 Nudix_Hydrolase_25 Con 99.7 3.1E-17 6.6E-22 133.7 14.1 111 124-253 2-117 (128)
29 cd03674 Nudix_Hydrolase_1 Memb 99.7 5.8E-17 1.3E-21 136.0 16.1 130 121-278 1-137 (138)
30 cd04683 Nudix_Hydrolase_24 Mem 99.7 3.8E-17 8.3E-22 132.7 13.3 113 124-255 2-116 (120)
31 cd03427 MTH1 MutT homolog-1 (M 99.7 4E-17 8.8E-22 135.5 13.4 109 123-253 2-111 (137)
32 cd04673 Nudix_Hydrolase_15 Mem 99.7 7.6E-17 1.6E-21 130.5 14.0 111 124-253 2-114 (122)
33 cd04700 DR1025_like DR1025 fro 99.7 8.2E-17 1.8E-21 136.1 14.3 118 119-257 10-129 (142)
34 cd04678 Nudix_Hydrolase_19 Mem 99.7 1E-16 2.2E-21 132.0 14.1 112 122-253 2-117 (129)
35 cd03671 Ap4A_hydrolase_plant_l 99.7 2.6E-16 5.6E-21 133.4 16.5 116 121-255 2-133 (147)
36 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.4E-16 3E-21 130.0 13.8 114 124-256 3-117 (129)
37 cd04691 Nudix_Hydrolase_32 Mem 99.7 1.3E-16 2.7E-21 130.4 13.5 107 126-256 4-111 (117)
38 cd04677 Nudix_Hydrolase_18 Mem 99.7 1E-16 2.2E-21 131.9 12.2 115 119-255 4-124 (132)
39 cd04680 Nudix_Hydrolase_21 Mem 99.7 1.7E-16 3.8E-21 128.3 12.5 105 124-253 2-108 (120)
40 cd03429 NADH_pyrophosphatase N 99.7 1.6E-16 3.5E-21 132.5 12.3 105 124-253 2-107 (131)
41 cd04670 Nudix_Hydrolase_12 Mem 99.7 4.1E-16 8.8E-21 128.2 13.8 108 122-252 2-112 (127)
42 PRK00714 RNA pyrophosphohydrol 99.7 6.3E-16 1.4E-20 133.1 15.5 116 120-255 6-137 (156)
43 cd03675 Nudix_Hydrolase_2 Cont 99.7 8.7E-16 1.9E-20 127.2 15.4 125 125-279 3-129 (134)
44 cd04689 Nudix_Hydrolase_30 Mem 99.7 1.4E-15 3E-20 124.7 13.5 108 122-251 1-112 (125)
45 cd04676 Nudix_Hydrolase_17 Mem 99.7 8.8E-16 1.9E-20 124.6 12.3 109 123-253 3-117 (129)
46 cd04688 Nudix_Hydrolase_29 Mem 99.7 1.5E-15 3.2E-20 124.7 13.2 109 122-253 2-118 (126)
47 PRK10776 nucleoside triphospha 99.7 3E-15 6.5E-20 121.9 14.1 120 124-277 6-126 (129)
48 cd04687 Nudix_Hydrolase_28 Mem 99.7 3E-15 6.5E-20 123.4 13.9 113 123-253 2-121 (128)
49 cd03428 Ap4A_hydrolase_human_l 99.6 2.5E-15 5.3E-20 123.5 13.1 109 123-255 3-117 (130)
50 cd04690 Nudix_Hydrolase_31 Mem 99.6 3.2E-15 6.9E-20 120.9 13.2 107 125-252 3-109 (118)
51 cd03425 MutT_pyrophosphohydrol 99.6 4.9E-15 1.1E-19 119.0 13.5 108 124-253 3-110 (124)
52 PLN02325 nudix hydrolase 99.6 5.5E-15 1.2E-19 125.7 13.9 115 120-253 7-125 (144)
53 cd02883 Nudix_Hydrolase Nudix 99.6 5.7E-15 1.2E-19 117.2 13.0 109 124-253 2-112 (123)
54 PRK10546 pyrimidine (deoxy)nuc 99.6 9.5E-15 2.1E-19 120.9 14.8 120 124-278 6-126 (135)
55 cd04671 Nudix_Hydrolase_13 Mem 99.6 4.1E-15 9E-20 123.0 12.4 107 124-255 2-112 (123)
56 cd04685 Nudix_Hydrolase_26 Mem 99.6 1E-14 2.2E-19 122.6 13.7 116 123-253 1-123 (133)
57 cd04672 Nudix_Hydrolase_14 Mem 99.6 7.7E-15 1.7E-19 120.2 12.5 110 124-255 4-114 (123)
58 cd04695 Nudix_Hydrolase_36 Mem 99.6 1.6E-14 3.5E-19 119.9 13.8 104 131-255 11-116 (131)
59 cd03672 Dcp2p mRNA decapping e 99.6 1.5E-14 3.3E-19 123.2 13.9 107 124-256 3-114 (145)
60 cd04667 Nudix_Hydrolase_10 Mem 99.6 1.9E-14 4.1E-19 116.1 12.1 95 131-255 8-103 (112)
61 cd04666 Nudix_Hydrolase_9 Memb 99.6 5.3E-14 1.2E-18 116.4 14.5 113 124-256 2-118 (122)
62 PRK00241 nudC NADH pyrophospha 99.6 1.4E-14 3.1E-19 134.6 12.0 106 122-253 132-238 (256)
63 cd04669 Nudix_Hydrolase_11 Mem 99.6 2.2E-14 4.7E-19 117.8 11.7 102 125-253 3-114 (121)
64 PRK10707 putative NUDIX hydrol 99.5 1E-13 2.3E-18 123.5 13.5 114 124-255 32-148 (190)
65 TIGR00586 mutt mutator mutT pr 99.5 2.8E-13 6.1E-18 110.6 14.4 109 123-253 5-113 (128)
66 cd04511 Nudix_Hydrolase_4 Memb 99.5 1.8E-13 3.8E-18 113.5 12.9 104 122-251 13-117 (130)
67 cd04661 MRP_L46 Mitochondrial 99.5 1.3E-13 2.7E-18 115.3 11.2 109 133-256 12-123 (132)
68 PRK11762 nudE adenosine nucleo 99.5 8.8E-13 1.9E-17 116.5 17.0 114 123-257 48-163 (185)
69 cd04686 Nudix_Hydrolase_27 Mem 99.5 6.6E-13 1.4E-17 110.5 14.1 112 124-255 2-121 (131)
70 PRK05379 bifunctional nicotina 99.5 1.2E-12 2.6E-17 126.2 17.0 134 121-278 202-338 (340)
71 COG1051 ADP-ribose pyrophospha 99.5 7.4E-13 1.6E-17 113.1 12.8 112 121-253 9-122 (145)
72 PLN02709 nudix hydrolase 99.4 9.5E-13 2.1E-17 119.9 12.5 116 119-253 30-155 (222)
73 PRK10729 nudF ADP-ribose pyrop 99.4 1.3E-11 2.9E-16 111.0 18.0 115 123-257 50-175 (202)
74 TIGR00052 nudix-type nucleosid 99.4 3.6E-12 7.8E-17 113.1 12.3 114 124-257 46-169 (185)
75 PRK08999 hypothetical protein; 99.4 6.4E-12 1.4E-16 118.8 14.6 108 123-252 6-113 (312)
76 KOG4313 Thiamine pyrophosphoki 99.3 2.3E-12 5E-17 117.5 8.3 167 88-279 104-277 (306)
77 cd04662 Nudix_Hydrolase_5 Memb 99.3 2.1E-11 4.6E-16 102.1 12.0 59 124-192 2-65 (126)
78 COG2816 NPY1 NTP pyrophosphohy 99.3 4.3E-12 9.2E-17 118.5 8.4 135 119-281 141-277 (279)
79 PRK15009 GDP-mannose pyrophosp 99.3 2.2E-10 4.8E-15 102.2 16.2 114 123-257 46-170 (191)
80 cd04665 Nudix_Hydrolase_8 Memb 99.2 1.2E-10 2.7E-15 96.2 12.3 99 125-250 3-102 (118)
81 TIGR02705 nudix_YtkD nucleosid 99.2 4.6E-10 1E-14 97.3 15.2 105 124-257 26-131 (156)
82 KOG3084 NADH pyrophosphatase I 99.2 2.4E-11 5.1E-16 114.5 4.5 167 91-286 153-335 (345)
83 cd04674 Nudix_Hydrolase_16 Mem 99.1 1.3E-09 2.9E-14 90.2 12.9 55 125-192 7-61 (118)
84 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 5.3E-10 1.1E-14 99.6 10.4 106 135-256 50-174 (186)
85 COG0494 MutT NTP pyrophosphohy 99.1 1.8E-09 3.8E-14 86.9 10.7 115 124-255 13-136 (161)
86 cd04663 Nudix_Hydrolase_6 Memb 99.0 3.5E-09 7.5E-14 88.8 11.2 51 125-191 3-55 (126)
87 PLN03143 nudix hydrolase; Prov 98.9 1.4E-08 3E-13 96.3 13.5 146 93-257 94-269 (291)
88 KOG3069 Peroxisomal NUDIX hydr 98.9 4.7E-09 1E-13 95.6 9.5 113 122-252 43-162 (246)
89 cd03431 DNA_Glycosylase_C DNA 98.9 7.2E-08 1.6E-12 77.0 13.7 102 124-253 4-105 (118)
90 KOG2839 Diadenosine and diphos 98.9 2.5E-08 5.5E-13 84.7 11.1 129 121-280 8-141 (145)
91 KOG0648 Predicted NUDIX hydrol 98.6 3.7E-08 8E-13 92.8 4.1 183 73-280 64-253 (295)
92 KOG3041 Nucleoside diphosphate 98.1 0.00015 3.3E-09 64.9 14.3 112 124-257 75-198 (225)
93 PF14815 NUDIX_4: NUDIX domain 97.9 3.6E-05 7.7E-10 62.2 7.6 100 127-253 2-103 (114)
94 COG4112 Predicted phosphoester 97.5 0.0017 3.7E-08 56.7 10.9 135 124-276 63-201 (203)
95 COG4119 Predicted NTP pyrophos 97.0 0.002 4.3E-08 54.2 6.2 91 150-257 36-139 (161)
96 PRK10880 adenine DNA glycosyla 95.5 0.18 3.9E-06 49.4 11.7 34 121-155 229-262 (350)
97 KOG4195 Transient receptor pot 93.7 0.083 1.8E-06 48.4 4.1 39 135-188 140-178 (275)
98 PF14443 DBC1: DBC1 93.1 0.65 1.4E-05 39.1 8.2 70 136-215 10-80 (126)
99 PF13869 NUDIX_2: Nucleotide h 92.3 0.4 8.6E-06 43.0 6.4 60 116-191 38-99 (188)
100 KOG4432 Uncharacterized NUDIX 86.0 3.6 7.9E-05 39.6 7.9 76 175-258 299-381 (405)
101 TIGR01084 mutY A/G-specific ad 85.4 2.5 5.4E-05 40.0 6.7 35 120-155 224-259 (275)
102 KOG4548 Mitochondrial ribosoma 83.2 5.2 0.00011 37.5 7.5 107 136-256 141-250 (263)
103 PRK13910 DNA glycosylase MutY; 73.7 5 0.00011 38.3 4.6 31 122-155 186-216 (289)
104 KOG1689 mRNA cleavage factor I 67.8 15 0.00032 32.8 5.7 58 117-190 65-124 (221)
105 KOG2937 Decapping enzyme compl 63.3 3.4 7.3E-05 40.1 1.0 104 124-253 84-192 (348)
106 KOG4432 Uncharacterized NUDIX 58.1 13 0.00029 35.9 4.0 38 155-204 83-120 (405)
107 PF03487 IL13: Interleukin-13; 45.5 19 0.00042 24.4 2.1 22 157-187 15-36 (43)
108 PF00571 CBS: CBS domain CBS d 39.4 27 0.00059 23.6 2.3 19 90-108 32-50 (57)
109 COG1194 MutY A/G-specific DNA 34.1 20 0.00044 35.1 1.2 34 122-156 235-268 (342)
110 COG2524 Predicted transcriptio 25.1 64 0.0014 30.8 2.8 28 82-109 256-286 (294)
111 COG5428 Uncharacterized conser 24.7 62 0.0013 24.5 2.1 19 86-104 28-46 (69)
112 cd04643 CBS_pair_30 The CBS do 22.9 89 0.0019 23.6 2.9 21 88-108 92-112 (116)
113 cd04583 CBS_pair_ABC_OpuCA_ass 22.2 87 0.0019 23.3 2.7 20 89-108 86-105 (109)
114 cd04619 CBS_pair_6 The CBS dom 22.2 79 0.0017 24.2 2.5 19 90-108 92-110 (114)
115 cd04614 CBS_pair_1 The CBS dom 22.0 82 0.0018 23.7 2.5 19 90-108 74-92 (96)
116 cd04641 CBS_pair_28 The CBS do 21.5 80 0.0017 24.3 2.4 19 90-108 98-116 (120)
117 cd04627 CBS_pair_14 The CBS do 21.3 81 0.0017 24.4 2.4 19 90-108 101-119 (123)
118 cd04607 CBS_pair_NTP_transfera 21.1 98 0.0021 23.4 2.8 26 83-108 81-109 (113)
119 PF04525 Tub_2: Tubby C 2; In 21.1 1.2E+02 0.0026 26.4 3.7 58 88-158 27-85 (187)
120 cd04603 CBS_pair_KefB_assoc Th 21.0 84 0.0018 24.0 2.4 19 90-108 89-107 (111)
No 1
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-63 Score=433.77 Aligned_cols=224 Identities=64% Similarity=1.087 Sum_probs=214.1
Q ss_pred CCcccccCCCHHHHHhhhcCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCC
Q 022053 70 GDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149 (303)
Q Consensus 70 ~~~~~~~~~d~~q~~lm~eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~P 149 (303)
|.+.++++||+.|+++|.+ +|++||+||++||+++|++||+|+|+++ |++||||+||+||++|++|||||+..|++||
T Consensus 2 ~~~~~~~~~d~~Q~~~l~e-~ci~VDenD~~IG~~tk~~cHl~eni~k-glLHRaFSVFlFns~~~lLlQqRS~~KitFP 79 (225)
T KOG0142|consen 2 MSETNLSGMDEQQVKLLAE-NCILVDENDNVIGAGTKKNCHLMENIEK-GLLHRAFSVFLFNSKNELLLQQRSDEKITFP 79 (225)
T ss_pred CccccccccCHHHHHHHhh-heEeeccccccccchhhhhhhcchhHHh-hhhhheeeEEEecCcchHHHhhhcccccccc
Confidence 5678999999999999975 9999999999999999999999999985 7999999999999999999999999999999
Q ss_pred CceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEec
Q 022053 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD 229 (303)
Q Consensus 150 G~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d 229 (303)
+.|+++||+|+.....++.+.+++|++.||+|.|..|+||+.+.+++++|+++++++|++++++.|||||++|+++++.+
T Consensus 80 ~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~ 159 (225)
T KOG0142|consen 80 GLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKD 159 (225)
T ss_pred chhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEecc
Confidence 99999999999987777788889999999999999999999999988999999999999999999999999999999999
Q ss_pred CcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHhcccccccccCCCceeec
Q 022053 230 VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 302 (303)
Q Consensus 230 ~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~~ww~~~~~~~l~~~~~~~~i~~~ 302 (303)
.+++||++||++++||+.+||++++++.+ ..|||||++|+++|+++||+++++ |.+++++.+||||
T Consensus 160 ~~~nPnpnEv~e~ryvs~eelkel~~~~~-----~~~TPWfkli~~~~l~~WW~~l~~--~~~~~~~~~i~r~ 225 (225)
T KOG0142|consen 160 VTLNPNPNEVSEIRYVSREELKELVAKAS-----AGFTPWFKLISENFLFKWWDDLDK--LTEFEEDTNIHRL 225 (225)
T ss_pred CCCCCChhhhhHhheecHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHhhhcc--cccCccccccccC
Confidence 99999999999999999999999999854 469999999999999999999997 9999999999997
No 2
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=100.00 E-value=8.6e-52 Score=380.69 Aligned_cols=230 Identities=78% Similarity=1.246 Sum_probs=204.5
Q ss_pred ccCCcccccCCCHHHHHhhhcCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCc
Q 022053 68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147 (303)
Q Consensus 68 ~~~~~~~~~~~d~~q~~lm~eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~ 147 (303)
++|++...++||+.|+++|.+|.|++||++|+++|..+|+.||..+++.++|++||||+|+|+|++|+||||||+..|.+
T Consensus 2 ~~~~~~~~~~~~~~q~~~~~~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~ 81 (247)
T PLN02552 2 GTMADATWAGMDAVQRRLMFEDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVT 81 (247)
T ss_pred CccccccccccCHHHHhhhhcCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCC
Confidence 46888899999999999998899999999999999999999997666666899999999999999999999999999999
Q ss_pred CCCceecccCccCCCCCC--------hhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCC------C
Q 022053 148 FPLVWTNTCCSHPLYRES--------ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------G 213 (303)
Q Consensus 148 ~PG~W~~p~gGhve~gEs--------~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~------~ 213 (303)
|||+|+++||||+.+||+ ++..++++|+.+||+|||+|||||....+++++|.+++++.|..+.. +
T Consensus 82 ~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~ 161 (247)
T PLN02552 82 FPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDG 161 (247)
T ss_pred CCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCC
Confidence 999999999999999855 23344556689999999999999998766667788999999988764 7
Q ss_pred CCcceEEEEEEEEEe--cCcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHhcccccc
Q 022053 214 KWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLN 291 (303)
Q Consensus 214 ~~~ehei~~vf~~~~--d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~~ww~~~~~~~l~ 291 (303)
+|++++++|+|+... +..+.++++||.+++|++++||.+++... .+..|||||+.++++|+..||+++++ .+
T Consensus 162 ~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~----~~~~~tpw~~~~~~~~l~~w~~~~~~--~~ 235 (247)
T PLN02552 162 KWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKEMMRKE----SGLKLSPWFRLIVDNFLMKWWDDLEK--GT 235 (247)
T ss_pred CccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHHHHHhhc----CCcccCHHHHHHHHHHHHHHHhhhcc--hh
Confidence 788899999887642 34788999999999999999999998853 46789999999999999999999998 59
Q ss_pred cccCCCceeecC
Q 022053 292 EVIDMKTIHKLT 303 (303)
Q Consensus 292 ~~~~~~~i~~~~ 303 (303)
+++++++||||.
T Consensus 236 ~~~~~~~i~~~~ 247 (247)
T PLN02552 236 EAVDMKTIHKLM 247 (247)
T ss_pred hccChhhheecC
Confidence 999999999973
No 3
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=100.00 E-value=1.8e-43 Score=305.31 Aligned_cols=170 Identities=40% Similarity=0.654 Sum_probs=159.6
Q ss_pred cCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChh
Q 022053 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL 167 (303)
Q Consensus 88 eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l 167 (303)
+|.|+++|++|+++|.++|+.||.+++++ +||||++||||.+|+||||||+..|.+|||.|+++||||+.+||+
T Consensus 3 ~e~vill~~~d~~~G~~~k~~~Ht~d~~~----LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es-- 76 (185)
T COG1443 3 TEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES-- 76 (185)
T ss_pred ceeEEEECCCCCccccchhhhhhccccHH----HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc--
Confidence 57999999999999999999999976543 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcH
Q 022053 168 IEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNR 247 (303)
Q Consensus 168 ~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~ 247 (303)
.++||+|.|.+||||++.. .+.+.++.+|+|++++.++|+|+|+|+|++++.+..+.+|++||.+++|+++
T Consensus 77 -------~~~A~~rRl~~ELGie~~~--~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~ 147 (185)
T COG1443 77 -------NEDAARRRLAYELGIEPDQ--YDKLEILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSP 147 (185)
T ss_pred -------hHHHHHHHHHHHhCCCCcc--cCccccccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccCH
Confidence 8999999999999999875 4577889999999999999999999999999987789999999999999999
Q ss_pred HHHHHHHHhccCCCCCcccCHHHHHHHHHH
Q 022053 248 EQLKELLRKADAGEEGLKLSPWFRLVVDNF 277 (303)
Q Consensus 248 eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~ 277 (303)
++|.+++... +..|+|||++++.++
T Consensus 148 e~l~~~~~~~-----~~~fsPW~~~~~~~~ 172 (185)
T COG1443 148 EDLKEMVDAT-----PWAFSPWFVIQAEND 172 (185)
T ss_pred HHHHHhhcCC-----ceeeChHHHHHhcch
Confidence 9999999873 567999999999988
No 4
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=100.00 E-value=3.1e-33 Score=246.62 Aligned_cols=170 Identities=32% Similarity=0.536 Sum_probs=141.3
Q ss_pred hhhcCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCC
Q 022053 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 164 (303)
Q Consensus 85 lm~eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gE 164 (303)
++.+|.|++||+||+++|..+|+.+|. .+|++|++++++|+|++|+|||+||+..+..+||.|++++|||+++||
T Consensus 2 ~~~~E~~~~vd~~~~~~g~~~r~~~~~-----~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE 76 (184)
T PRK03759 2 MMETELVVLLDEQGVPTGTAEKAAAHT-----ADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGE 76 (184)
T ss_pred CCCceeEEEECCCCCCcccccHHHHHh-----cCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCC
Confidence 356789999999999999999999984 368999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEE
Q 022053 165 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 244 (303)
Q Consensus 165 s~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~W 244 (303)
+ +++||+||+.|||||++..+. ..++.+.|......+...++++++|.+.....+.++++|+.+++|
T Consensus 77 t---------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W 143 (184)
T PRK03759 77 S---------LEDAVIRRCREELGVEITDLE----LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQW 143 (184)
T ss_pred C---------HHHHHHHHHHHHhCCCccccc----cccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEE
Confidence 9 899999999999999885321 123344443322223334677788888766667778899999999
Q ss_pred EcHHHHHHHHHhccCCCCCcccCHHHHHHHHHH
Q 022053 245 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 277 (303)
Q Consensus 245 vs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~ 277 (303)
++++++.+++..+ +..|+||++.++.++
T Consensus 144 ~~~~el~~~i~~~-----~~~~~~~l~~~~~~~ 171 (184)
T PRK03759 144 VDPADLLRAVDAT-----PWAFSPWMVLQAANL 171 (184)
T ss_pred ECHHHHHHHHHhC-----CcccChHHHHHHHHh
Confidence 9999999999984 469999999987755
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=100.00 E-value=2.4e-33 Score=242.82 Aligned_cols=163 Identities=54% Similarity=0.892 Sum_probs=139.2
Q ss_pred cCeEEEEcCCCcEEeeeeccccchhhhhccCCce-eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCCh
Q 022053 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLL-HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166 (303)
Q Consensus 88 eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~-Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~ 166 (303)
+|.+++||++++++|..+|+.+|. +|++ |++|+++|+|++|++||+||+..+..|||.|++++|||+++||+
T Consensus 1 ~e~~~~~d~~~~~~g~~~r~~~~~------~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt- 73 (165)
T cd02885 1 EELVILVDEDDNPIGTAEKLEAHL------KGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG- 73 (165)
T ss_pred CcEEEEECCCCCCccccCHHHHhh------cCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC-
Confidence 479999999999999999999884 5777 99999999999999999999999999999999998999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEc
Q 022053 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 246 (303)
Q Consensus 167 l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs 246 (303)
+++||+||++|||||.+.... +. ++.+.|..+....+.++++.++|.+.......++++|+.+++|++
T Consensus 74 --------~~eaa~REl~EEtGl~~~~~~---~~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~ 141 (165)
T cd02885 74 --------VKDAAQRRLREELGITGDLLE---LV-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVS 141 (165)
T ss_pred --------HHHHHHHHHHHHhCCCccchh---hc-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEEC
Confidence 899999999999999976432 21 356666654444455577888888776555667888999999999
Q ss_pred HHHHHHHHHhccCCCCCcccCHHHHHHH
Q 022053 247 REQLKELLRKADAGEEGLKLSPWFRLVV 274 (303)
Q Consensus 247 ~eEL~~ll~~~~~~~~~~~ftPw~~~i~ 274 (303)
++|+.+++..+ ++.||||++.|+
T Consensus 142 ~~el~~~~~~~-----~~~~~~~~~~~~ 164 (165)
T cd02885 142 LEDLKELVAAA-----PEAFTPWFRLIL 164 (165)
T ss_pred HHHHHHHHHhC-----chhcCHHHHHHh
Confidence 99999999874 579999999886
No 6
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=100.00 E-value=1.4e-32 Score=241.03 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=141.1
Q ss_pred hcCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEE--EEeCC--CeEEEEEecCCCCcCCCceecccCccCCC
Q 022053 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF--LFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLY 162 (303)
Q Consensus 87 ~eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~--I~n~~--g~lLLqqRs~~K~~~PG~W~~p~gGhve~ 162 (303)
++|.++|||++|+++|..+|..+|. .|++|++|+++ ++|.+ ++||+|||+..|.+|||+|+++||||++.
T Consensus 3 ~~E~~~v~d~~~~~~~~~~r~~~~~------~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~ 76 (180)
T cd03676 3 RNELYAVYGPFGEPLFEIERAASRL------FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGH 76 (180)
T ss_pred cCcceeeECCCCCEeEEEEeccccc------CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCC
Confidence 3689999999999999999999984 79999999965 55765 89999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEec--CcCCCCccccc
Q 022053 163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVA 240 (303)
Q Consensus 163 gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d--~~i~~~~~EV~ 240 (303)
||+ +.+||+||++|||||+...+. .+.+++.+.|.....+....++++|+|.+..+ ..+.++++||.
T Consensus 77 gE~---------~~~aA~REl~EE~Gl~~~~~~--~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~ 145 (180)
T cd03676 77 GEG---------PEETLVKECDEEAGLPEDLVR--QLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVE 145 (180)
T ss_pred CCC---------HHHHHHHHHHHHhCCCHHHHh--hceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEe
Confidence 999 899999999999999876432 24566666555431222234788888877643 24567889999
Q ss_pred cEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHH
Q 022053 241 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 280 (303)
Q Consensus 241 ~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~~ 280 (303)
++.|++++|+.+++..+ .|+||+.+++-+||.+
T Consensus 146 ~~~~~~~~el~~~l~~g-------~~~~~~~lv~~~~~~~ 178 (180)
T cd03676 146 SFRLLTIDEVLRALKEG-------EFKPNCALVTLDFLIR 178 (180)
T ss_pred EEEEECHHHHHHHHHcC-------CCCcccHhHHHHHHhh
Confidence 99999999999999873 7999999999988764
No 7
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=100.00 E-value=2.3e-32 Score=235.58 Aligned_cols=157 Identities=54% Similarity=0.885 Sum_probs=132.6
Q ss_pred EEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhh
Q 022053 91 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEE 170 (303)
Q Consensus 91 ~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~ 170 (303)
+++||++|+++|..+|+.+|. ..|++|++++++|+|.+|+|||+||+..|..+||+|++|+|||++.||+
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~-----~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~----- 70 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHL-----QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL----- 70 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhh-----cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----
Confidence 589999999999999999984 3699999999999999999999999999999999999999999999995
Q ss_pred hhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHH
Q 022053 171 NALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 250 (303)
Q Consensus 171 ~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL 250 (303)
+||+||++|||||.+... ++..++.+.|..... ++.++++++|.+..+..+.++++|+++++|++++||
T Consensus 71 ------eaa~REl~EE~Gl~~~~~---~l~~~~~~~~~~~~~--~g~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el 139 (158)
T TIGR02150 71 ------EAAIRRLREELGIPADDV---PLTVLPRFSYRARDA--WGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEEL 139 (158)
T ss_pred ------HHHHHHHHHHHCCCcccc---ceEEcceEEEEEecC--CCcEEEEEEEEEecCCcccCChhHeeeEEEeCHHHH
Confidence 899999999999988643 234455555544322 234677888888766667778889999999999999
Q ss_pred HHHHHhccCCCCCcccCHHHHHH
Q 022053 251 KELLRKADAGEEGLKLSPWFRLV 273 (303)
Q Consensus 251 ~~ll~~~~~~~~~~~ftPw~~~i 273 (303)
.++++.. +..+|||++++
T Consensus 140 ~~~~~~~-----~~~~~p~~~~~ 157 (158)
T TIGR02150 140 KEILKAP-----WAGFSPWFRIQ 157 (158)
T ss_pred HHHHhcC-----ccccCHhhHHh
Confidence 9999973 57899999876
No 8
>PLN02791 Nudix hydrolase homolog
Probab=99.98 E-value=4.5e-32 Score=281.23 Aligned_cols=171 Identities=26% Similarity=0.378 Sum_probs=144.2
Q ss_pred hhcCeEEEEcCCCcEEee-eeccccchhhhhccCCceeEEEEEEEEeC-CCeEEEEEecCCCCcCCCceecccCccCCCC
Q 022053 86 MFEDECILVDENDRVVGH-ENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYR 163 (303)
Q Consensus 86 m~eE~~~vvDe~d~~iG~-~tr~~~H~~~~i~~~gl~Hravsv~I~n~-~g~lLLqqRs~~K~~~PG~W~~p~gGhve~g 163 (303)
|++|.|+|||++|+++|. .+|.+||. .|++|++|+|+|+|. +|+||||||+..|.+|||+|+++||||+++|
T Consensus 1 ~~eE~~DI~De~g~~~G~~~~R~evH~------~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aG 74 (770)
T PLN02791 1 MMEEHLDVLTAAGEKTGVSKPRGEVHR------DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAG 74 (770)
T ss_pred CCceEEEEECCCCCCCCccccHHhhcc------CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCC
Confidence 457899999999999998 68999994 699999999999996 6999999999999999999999999999999
Q ss_pred CChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcC-CCCCCcceEEEEEEEEEecC-----cCCCCcc
Q 022053 164 ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRDV-----SVNPNPD 237 (303)
Q Consensus 164 Es~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~-~~~~~~ehei~~vf~~~~d~-----~i~~~~~ 237 (303)
|+ +.+||+|||+||+||.+. .+++.+++.+.+... ..+.|.+++++++|++.... ++.++++
T Consensus 75 Es---------~~eAA~REL~EELGI~l~---~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~e 142 (770)
T PLN02791 75 DT---------SLLSAQRELEEELGIILP---KDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQES 142 (770)
T ss_pred CC---------HHHHHHHHHHHHhCCCCC---hhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChh
Confidence 99 789999999999999853 345677777655432 34567889999999876421 4578899
Q ss_pred ccccEEEEcHHHHHHHHHhccCCCCCcccCHH---------HHHHHHHHHH
Q 022053 238 EVAEYKYVNREQLKELLRKADAGEEGLKLSPW---------FRLVVDNFLF 279 (303)
Q Consensus 238 EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw---------~~~i~~~~l~ 279 (303)
||++++|++++|+.+++... +..|+|| |..|.++|..
T Consensus 143 EV~~v~wvsl~El~~~l~~~-----~~~fvP~~~~~~~~~~f~~i~~~~~~ 188 (770)
T PLN02791 143 EVSAVKYMSIEEYKSALAKE-----DPAYVPYDVNGEYGQLFSIIEKRYKV 188 (770)
T ss_pred hhheeEEEcHHHHHHHHhcC-----CCceeeccccchHHHHHHHHHHHHhc
Confidence 99999999999999999873 4577887 6666666654
No 9
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.97 E-value=3.1e-29 Score=220.79 Aligned_cols=164 Identities=22% Similarity=0.270 Sum_probs=134.1
Q ss_pred HHHHhhhcCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccC
Q 022053 81 VQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHP 160 (303)
Q Consensus 81 ~q~~lm~eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhv 160 (303)
+|+++|.-|++++||++|+++|..+|..+|. .++.|+++.++|+|++|+||||+|+..+..+||+|+.++|||+
T Consensus 2 ~~~~~~~~e~~~~~d~~~~~~g~~~~~~~~~------~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~v 75 (180)
T PRK15393 2 EQRRLASTEWVDIVNENNEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVV 75 (180)
T ss_pred CCCCCCCceEEEEECCCCCEeeEEEHHHHhh------CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcC
Confidence 4888999999999999999999999999884 6999999999999999999999999888889999987779999
Q ss_pred CCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccc
Q 022053 161 LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 240 (303)
Q Consensus 161 e~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~ 240 (303)
++||+ +++||+|||+|||||.+.. +.+++.+.|..+. . +.+.++|.+..+..+.++++|+.
T Consensus 76 e~GEs---------~~eAA~REL~EEtGl~~~~-----~~~~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~ 136 (180)
T PRK15393 76 QAGEQ---------LLESARREAEEELGIAGVP-----FAEHGQFYFEDEN----C-RVWGALFSCVSHGPFALQEEEVS 136 (180)
T ss_pred CCCCC---------HHHHHHHHHHHHHCCCCcc-----ceeceeEEecCCC----c-eEEEEEEEEEeCCCCCCChHHee
Confidence 99999 8999999999999998652 2345666554321 1 23344555555556677889999
Q ss_pred cEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHH
Q 022053 241 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 278 (303)
Q Consensus 241 ~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l 278 (303)
+++|++++++.+++. .|+|.....+..||
T Consensus 137 ~~~W~~~~el~~~~~---------~~~~~~~~~l~~~l 165 (180)
T PRK15393 137 EVCWMTPEEITARCD---------EFTPDSLKALALWL 165 (180)
T ss_pred EEEECCHHHHhhhhh---------hcCccHHHHHHHHH
Confidence 999999999998854 47777776666553
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.94 E-value=5e-26 Score=192.19 Aligned_cols=135 Identities=26% Similarity=0.373 Sum_probs=109.5
Q ss_pred eeEEEEEEEEeCC---CeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCC
Q 022053 121 LHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197 (303)
Q Consensus 121 ~Hravsv~I~n~~---g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~ 197 (303)
+||+|+|+|+|.+ ++||+|||+..+..+||.|++++|||+++||+ +++||+|||+|||||.+. ..
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~---~~ 68 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVS---AD 68 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCC---hH
Confidence 6999999999988 89999999999889999999988999999999 899999999999999864 23
Q ss_pred ceeeeEEEEEEcCCCCCCcceEEEEEEEEEec---CcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHH
Q 022053 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 272 (303)
Q Consensus 198 ~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d---~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~ 272 (303)
++.+++.+.+.....+....+++.++|++... ..+.++++|+.+++|++++++.+++.. .|..|+|||..
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~-----~~~~~~~~~~~ 141 (144)
T cd04692 69 DLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEE-----EDHKYQYYDGE 141 (144)
T ss_pred HeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHc-----CCCCCCccccc
Confidence 56677776655431222233556677777643 345677789999999999999999987 46799999864
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=2e-22 Score=166.62 Aligned_cols=116 Identities=28% Similarity=0.352 Sum_probs=95.6
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
+||+|+++|++|+||||||+..+..+||+|++++|||+++||+ +++||+||++||||+++. .+..+
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~-----~l~~~ 66 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGV-----QLTPL 66 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCcc-----ccEEe
Confidence 5899999999999999999988888999999977999999999 899999999999999875 34566
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHHHHHhc
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
+.+.|.... ...+.++|.+.....+.++++|+.+++|++++|+.+++..+
T Consensus 67 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 116 (126)
T cd04697 67 GLFYYDTDG-----NRVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGE 116 (126)
T ss_pred eEEEecCCC-----ceEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcC
Confidence 666554321 13345567666555667788899999999999999988764
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=1.9e-22 Score=166.21 Aligned_cols=124 Identities=31% Similarity=0.496 Sum_probs=97.0
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
++|.++++|++|+|||+||+..+..+||.|++|+|||++.||+ + +||+||++||||+.+.. ..+.++
T Consensus 1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~---~~~~~~ 67 (127)
T cd04693 1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDF---SELRPL 67 (127)
T ss_pred CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcCh---hhcEEE
Confidence 4788999999999999999998888999999998999999999 9 99999999999999762 244556
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 272 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~ 272 (303)
+++.|..+ + +...++|.+.. ...+.++++|+.+++|++++|+.+++.++ .++||+.+
T Consensus 68 ~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-------~~~~~~~~ 125 (127)
T cd04693 68 FRYFFEAE-----G-FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG-------EFTPYFES 125 (127)
T ss_pred EEEEeecC-----C-eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC-------Cccccccc
Confidence 66544332 1 22233343332 34566778899999999999999999874 57877654
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.83 E-value=1.1e-19 Score=152.65 Aligned_cols=120 Identities=22% Similarity=0.242 Sum_probs=81.1
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
.+|+++++|++.+|++||+||+..|..+||+|++| ||++++||+ +++||+||++|||||.+....+..+.
T Consensus 2 ~~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~ 71 (141)
T PRK15472 2 RQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLLLTEITPWT 71 (141)
T ss_pred cceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCceeeeeecccc
Confidence 35788888888889999999998888899999999 899999999 89999999999999986421111111
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEE---EEEe-cCcCCCCccccccEEEEcHHHHHHH
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLL---FIVR-DVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf---~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+...+.+....+ +.. .++.++| .+.. ...+.++ +|+.+++|++++||.++
T Consensus 72 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 72 FRDDIRTKTYAD-GRK-EEIYMIYLIFDCVSANRDVKIN-EEFQDYAWVKPEDLVHY 125 (141)
T ss_pred ccccceeEEecC-CCc-eeEEEEEEEEEeecCCCcccCC-hhhheEEEccHHHhccc
Confidence 111111111011 111 1222222 2322 2334444 79999999999999875
No 14
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.81 E-value=2.1e-19 Score=146.54 Aligned_cols=120 Identities=30% Similarity=0.442 Sum_probs=93.5
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
+|++|+++|+|++|++||.||...+..++|.|.+| ||+++.||+ +.+||+||+.||||+.+.. ..
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~~-----~~ 65 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVSP-----LE 65 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEEE-----EE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceecc-----cc
Confidence 58999999999999999999998877789999997 999999999 8999999999999999742 24
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEE--ecC-cCCCCccccccEEEEcHHHHHHHHHhc
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIV--RDV-SVNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~--~d~-~i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
.++.+.|........ +...++|.+. ... ...++.+|+.+++|++++|+.++...+
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 66 LLGLFSYPSPSGDPE--GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEEEETTTESS--EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred cceeeeecccCCCcc--cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 556666666544332 2333334333 222 445555699999999999999998763
No 15
>PLN02839 nudix hydrolase
Probab=99.81 E-value=7.2e-19 Score=169.02 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=136.6
Q ss_pred hcCeEEEEcC-CCcEEeeeeccccchhhhhccCCceeEEEEEEEEe---CCCeEEEEEecCCCCcCCCceecccCccCCC
Q 022053 87 FEDECILVDE-NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN---SKYELLLQQRSGTKVTFPLVWTNTCCSHPLY 162 (303)
Q Consensus 87 ~eE~~~vvDe-~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n---~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~ 162 (303)
++|.+.|++. ++.++....|..+-+ .|..-.+|++-.+. .+++++++||+.+|.+|||+||+.+||++..
T Consensus 173 RnE~y~V~~~~~~~~l~~iERaA~~l------fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~a 246 (372)
T PLN02839 173 RNELYPVKPSFNAPVFFSLERAAAPY------FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPH 246 (372)
T ss_pred ccCccccccCCCCcceEEEeeccccc------cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccC
Confidence 4778999875 457889999987654 68888888876553 2347999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEe--cCcCCCCccccc
Q 022053 163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVA 240 (303)
Q Consensus 163 gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~--d~~i~~~~~EV~ 240 (303)
||+ +.++++||+.||.||+.+.+ ..+...|.+.|......++. ++..|+|-+.. +..+.++++||+
T Consensus 247 Ges---------p~etliREa~EEAgLp~~l~--~~~~~~G~VsY~~~~~~g~~-~evly~YDLeLP~df~P~~qDGEVe 314 (372)
T PLN02839 247 GIS---------CGENLVKECEEEAGISKAIA--DRAIAVGAVSYMDIDQYCFK-RDVLFCYDLELPQDFVPKNQDGEVE 314 (372)
T ss_pred CCC---------HHHHHHHHHHHHcCCCHHHH--hcceEeEEEEEEEEcCCccc-cCEEEEeeeecCCccccCCCcccee
Confidence 999 89999999999999987633 35677888888754433332 45556665553 455678899999
Q ss_pred cEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHH
Q 022053 241 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 280 (303)
Q Consensus 241 ~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~~ 280 (303)
++.+++++|+.+.+..+ ..|+|...+++-+||.+
T Consensus 315 ~F~Lm~v~EV~~~l~~~------~~fKpn~aLViiDFLiR 348 (372)
T PLN02839 315 SFKLIPVAQVANVIRKT------SFFKANCSLVIIDFLFR 348 (372)
T ss_pred EEEEecHHHHHHHHHcC------CCCCcccHHHHHHHHHH
Confidence 99999999999999863 46999999999899874
No 16
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.9e-18 Score=147.12 Aligned_cols=125 Identities=24% Similarity=0.414 Sum_probs=91.8
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
.+|+++++|.+|+|||+||+..+..|||+|++| |||+++||+ +++||+||+.||+||.+.... ..++++
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~-~~~~~l 70 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPID-KSWQVL 70 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCccccc-cceeEE
Confidence 368899999999999999998887899999998 899999999 899999999999999876321 123445
Q ss_pred EEE--EEEcCCCCC--CcceEEEEEEEEEec------CcCCCCccccccEEEEcHHHHHHHHHhcc
Q 022053 203 GRI--LYKAPSDGK--WGEHELDYLLFIVRD------VSVNPNPDEVAEYKYVNREQLKELLRKAD 258 (303)
Q Consensus 203 ~~i--~y~~~~~~~--~~ehei~~vf~~~~d------~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~ 258 (303)
+.+ .|......+ ..++...|++.+... ..+.++++|+++++|++++++.+++...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~~ 136 (143)
T cd04694 71 GLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAED 136 (143)
T ss_pred eeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhhc
Confidence 443 232211111 123444454443321 13457789999999999999999998753
No 17
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.78 E-value=3.1e-18 Score=144.94 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=91.3
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
.+.++.++++|.+|++||+||.. .||.|++| |||++.||+ +.+||+|||+|||||.+.. ..+.
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~---~~~~ 68 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDVLA---EQLT 68 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCccc---ccee
Confidence 45688899999999999998864 37899998 999999999 8999999999999998731 1112
Q ss_pred eeE---EEEEEc------CCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHH
Q 022053 201 PLG---RILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 271 (303)
Q Consensus 201 ~l~---~i~y~~------~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~ 271 (303)
+++ ...|.. ....+. .+...++|.+.......+..+|+.+++|++++|+.++. +.|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-----------~~~~~~ 136 (148)
T PRK09438 69 LIDCQRSIEYEIFPHWRHRYAPGV-TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT-----------KSWSNA 136 (148)
T ss_pred ecccccccccccchhhhhcccccc-CCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh-----------cChhHH
Confidence 111 011110 001121 25667778776543334445699999999999998873 457777
Q ss_pred HHHHHHHH
Q 022053 272 LVVDNFLF 279 (303)
Q Consensus 272 ~i~~~~l~ 279 (303)
.+++.++.
T Consensus 137 ~~l~~~~~ 144 (148)
T PRK09438 137 EAIEQLVI 144 (148)
T ss_pred HHHHHHHH
Confidence 77776644
No 18
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.5e-18 Score=142.12 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=83.3
Q ss_pred eEEEEEEEEeCCCeEEEEEecCC-CCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~-K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
|.++.++++++ |++||++|+.. +..|||.|++| ||+++.||+ +++||+||++||||+.+... .+.
T Consensus 1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~---~~~ 66 (122)
T cd04682 1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLPES---RIP 66 (122)
T ss_pred CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccccc---ccc
Confidence 45677777776 99999999976 78899999998 999999999 89999999999999997522 122
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEEec-C-cCCCCccccccEEEEcHHHHHHH
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIVRD-V-SVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~~d-~-~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+.. .|..+ . .+...++|.+... . ....+++|+.+++|++++||.+.
T Consensus 67 ~~~--~~~~~----~-~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 67 WFR--VYPSA----S-PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred eeE--ecccC----C-CCceEEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 222 23222 1 1345566766542 2 24567789999999999999765
No 19
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=6.7e-18 Score=138.98 Aligned_cols=110 Identities=23% Similarity=0.240 Sum_probs=81.5
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
||.++|+|++|++||+||.... ++|.|++| ||+++.||+ +.+||.||++||||+++.. +.+++
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~~ 65 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTE-----LSYLF 65 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccc-----eeEEE
Confidence 7889999999999999998643 68999998 999999999 8999999999999998763 34455
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEecC-cCCCCccccccEEEEcHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLK 251 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~d~-~i~~~~~EV~~~~Wvs~eEL~ 251 (303)
.+.+..+.. +...+.+.++|.+.... ....+.+|+.+++|+++++|.
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 66 SLPNTYPYG-GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred eecceeeeC-CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCC
Confidence 432221211 22334444455555432 345567899999999999984
No 20
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.76 E-value=1.7e-17 Score=137.88 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=88.6
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
|+++.+++++++|++||.+|.... ..++.|++| ||+++.||+ +.+||+||++||+|+.+. .+..
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~-----~~~~ 65 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAG-----DLEK 65 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCcc-----ceEE
Confidence 679999999999999998765433 367899998 999999999 899999999999999975 2355
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEecCc---CCCCccccccEEEEcHHHHHHHHHhc
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVRDVS---VNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~d~~---i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
++.+.+.. +.. +...++|++..+.. +.++++|+.+++|++++|+.+++..+
T Consensus 66 ~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 66 LGSFYPSP----GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EeeEecCC----ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 66554321 111 33456666654332 45677899999999999999999874
No 21
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.76 E-value=5.6e-18 Score=145.66 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=85.0
Q ss_pred eEEEEEEEEeCC--CeEEEEEecCCCCcCCCceecccCccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 122 HRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 122 Hravsv~I~n~~--g~lLLqqRs~~K~~~PG~W~~p~gGhve~g-Es~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
|.||.+++++.+ ++|||+||+..+..+||.|++| ||+++.| |+ +.+||+||++||||+++..
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~----- 66 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDS----- 66 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccc-----
Confidence 568889999876 5899999998887899999998 9999999 99 8999999999999998763
Q ss_pred eeeeEEEEEEcCCCCCCcceEEEEEEEEEec--CcCCCCccccccEEEEcHHHHHHH
Q 022053 199 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 199 l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d--~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+.+++.+...... . ....++|++... ..+.++++|+.+++|++++++.+.
T Consensus 67 ~~~l~~~~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 67 VEVLGRLPPYYTR-S----GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred eEEEEECCCcccc-C----CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 3445443211111 1 122344444432 356778889999999999999875
No 22
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.76 E-value=2.7e-17 Score=134.52 Aligned_cols=124 Identities=27% Similarity=0.290 Sum_probs=90.3
Q ss_pred EEEEEEEEeCC---CeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCce
Q 022053 123 RAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (303)
Q Consensus 123 ravsv~I~n~~---g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l 199 (303)
.+++++|++.+ ++|||+||... |.|++| |||++.||+ +.+||+||++||||+.+...
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~~----- 61 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEVG----- 61 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEec-----
Confidence 35677777765 89999998643 899998 999999999 89999999999999987632
Q ss_pred eeeEEEEEEcCCCCCCcceEEEEEEEEEe-cCcCCC-CccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHH
Q 022053 200 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 277 (303)
Q Consensus 200 ~~l~~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~-~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~ 277 (303)
.+++.+.|..+..+... +...++|.+.. ...+.+ +++|+.+++|++++++.+++. .|..+.+++.|
T Consensus 62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-----------~~~~~~~l~~~ 129 (131)
T cd03673 62 DPLGTIRYWFSSSGKRV-HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS-----------YPNDRELLRAA 129 (131)
T ss_pred ceEEEEEEeccCCCCCc-ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC-----------CHhHHHHHHHh
Confidence 45666666655432222 45556666654 333443 568999999999999987643 35566666655
Q ss_pred H
Q 022053 278 L 278 (303)
Q Consensus 278 l 278 (303)
+
T Consensus 130 ~ 130 (131)
T cd03673 130 L 130 (131)
T ss_pred h
Confidence 3
No 23
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.76 E-value=2.5e-17 Score=142.91 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=86.3
Q ss_pred ceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCce
Q 022053 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (303)
Q Consensus 120 l~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l 199 (303)
..+.++.++|++.+|+|||+||+.. .++|+|++| ||+++.||+ +++||+||++|||||.+... . .
T Consensus 15 ~~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~~~-~--~ 79 (159)
T PRK15434 15 TPLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPIT-A--G 79 (159)
T ss_pred CceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccccc-c--c
Confidence 3556899999998899999999853 478999998 999999999 89999999999999986421 1 1
Q ss_pred eeeEEE--EEEcC-CCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHH
Q 022053 200 TPLGRI--LYKAP-SDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 200 ~~l~~i--~y~~~-~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+++.+ .|... ....+..|.+..+|.+.. ...+.++++|+.+++|++++|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 80 QFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred eEEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence 233322 22221 112233355666666654 3456666779999999999999764
No 24
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.9e-17 Score=135.80 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=84.6
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
+.+++++|++.+|++||++|... ..+|.|++| |||++.||+ +.+||+||++||||+.+... .+
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~~-----~~ 64 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHST-----RL 64 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence 56889999999899999999753 357999998 999999999 89999999999999997632 34
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEe-cCcC-CCCccccccEEEEcHHHHHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~-d~~i-~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
++.+.+..... ..+.+.++|++.. +... ..+++|+.+++|++++++.+.+.
T Consensus 65 ~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 65 LCVVDHIIEEP---PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EEEEeecccCC---CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 55443322211 2255666676654 2222 34567999999999999977554
No 25
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.5e-17 Score=135.29 Aligned_cols=111 Identities=17% Similarity=0.263 Sum_probs=78.5
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
.++.++|+|.+|++||+||.. ++|.|.+| ||+++.||+ +++||+||++||||+++..+ .++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~ 63 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDI-----KFA 63 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCccccc-----ceE
Confidence 367889999889999998752 57999998 999999999 89999999999999987643 223
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEecC-cCCCCccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d~-~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
....|.......-..|.+.+.|.+.... .+..+ +|+.+++|++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 64 MVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPN-EEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEEEEeccCCCCCccEEEEEEEEEEecCCcccCC-cccceeEEECHHHHhcC
Confidence 2222221111000124455556665433 34443 68999999999999764
No 26
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.75 E-value=1.7e-17 Score=136.80 Aligned_cols=113 Identities=21% Similarity=0.182 Sum_probs=83.7
Q ss_pred EEEEEEEEeC--CCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 123 RAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 123 ravsv~I~n~--~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
|.++|++++. +|++||+||+.. +||.|++| |||++.||+ +.+||+||++|||||.+..+ .
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~~~-----~ 63 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPERL-----T 63 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChhhe-----E
Confidence 5789999998 899999999865 89999987 999999999 89999999999999987532 2
Q ss_pred eeEEEE----EEcCCCCCCcceEEEEEEEEEecCc-CCCCccccccEEEEcHHHHHHHHHh
Q 022053 201 PLGRIL----YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 201 ~l~~i~----y~~~~~~~~~ehei~~vf~~~~d~~-i~~~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
++.... |.... .+ .+...++|.+..... ....++|+.+++|++++++.+++..
T Consensus 64 ~~~~~~~~~~~~~~~-~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 64 LLDRGASIAFVEFTD-NG--RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred EEeecccccccccCC-Cc--eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcC
Confidence 333221 21111 11 245566777765332 2345579999999999999987653
No 27
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.75 E-value=2.6e-17 Score=139.74 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=84.6
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
-.+++++|+|.+|+|||+||... .++|+|.+| ||+++.||+ +++||+||++||||+.+.. ..+++
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~---~~~~~ 76 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLI---SDAEL 76 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCccc---ccceE
Confidence 45889999999999999999753 479999998 999999999 8999999999999998763 22244
Q ss_pred eEEEE--EEcCC-CCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHH
Q 022053 202 LGRIL--YKAPS-DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 202 l~~i~--y~~~~-~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
++.+. |.... ..+...|.+..+|.+.. ...+..+++|+.+++|++++++.++
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 44432 22111 11122244555555554 3344556789999999999999764
No 28
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.75 E-value=3.1e-17 Score=133.69 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=82.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
++.++|+++ +++||.||+..+ ++|.|.+| ||+++.||+ +.+||+||++||||+.+.. +.+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~ 63 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEI-----GRRLG 63 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeec-----ceeee
Confidence 566777876 999999998654 78999998 999999999 8999999999999998763 23455
Q ss_pred EEE--EEcCCCCCCcceEEEEEEEEEecCcC---CCCccccccEEEEcHHHHHHH
Q 022053 204 RIL--YKAPSDGKWGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 204 ~i~--y~~~~~~~~~ehei~~vf~~~~d~~i---~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+. |..+....+ .+.+.++|.+...... ..+.+|+.+++|++++++.+.
T Consensus 64 ~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 64 SASRYFYSPDGDYD-AHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred EEEEEEECCCCCee-ccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhcc
Confidence 443 333222112 2667778877654322 445578899999999999754
No 29
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.75 E-value=5.8e-17 Score=136.01 Aligned_cols=130 Identities=25% Similarity=0.262 Sum_probs=88.5
Q ss_pred eeEEEEEEEEeCC-CeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCce
Q 022053 121 LHRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (303)
Q Consensus 121 ~Hravsv~I~n~~-g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l 199 (303)
.|.+++++|+|++ +++||.||+. .|.|.+| |||+++||+ +++||+||++||||+.+..+....+
T Consensus 1 ~~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~~ 65 (138)
T cd03674 1 GHFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLGLRPLSV 65 (138)
T ss_pred CcEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCcccceeccc
Confidence 3889999999987 8999998864 4889997 999999999 8999999999999998653321000
Q ss_pred e-eeEEEEEEcCCCCC---CcceEEEEEEEEEe-cCcCC-CCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHH
Q 022053 200 T-PLGRILYKAPSDGK---WGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 273 (303)
Q Consensus 200 ~-~l~~i~y~~~~~~~---~~ehei~~vf~~~~-d~~i~-~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i 273 (303)
. +. .+ +....... ...+.++.+|.+.. ...+. ++++|+.+++|++++++..+ .+.|..+.+
T Consensus 66 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~ 132 (138)
T cd03674 66 LVDL-DV-HPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL-----------ELPEDVRRL 132 (138)
T ss_pred cccc-ee-EeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc-----------cCCHHHHHH
Confidence 0 00 11 11111100 11122444566653 23333 36689999999999998653 456778888
Q ss_pred HHHHH
Q 022053 274 VDNFL 278 (303)
Q Consensus 274 ~~~~l 278 (303)
+.+.|
T Consensus 133 i~~~~ 137 (138)
T cd03674 133 VEKAL 137 (138)
T ss_pred HHHHh
Confidence 87765
No 30
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.8e-17 Score=132.70 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=82.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
+|+++|++ +|+|||+||...+ .++|+|++| ||++++||+ +.+||+||++|||||.+. ..++.+++
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~---~~~~~~~~ 66 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTG-YMDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLD---PEDLRLAH 66 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccC---hhheEEEE
Confidence 56777776 4899999998654 358999998 999999999 899999999999999875 22455666
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEe-cCcC-CCCccccccEEEEcHHHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~-d~~i-~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.+++.... ..+.+.++|.+.. ...+ ..+++|+.+++|+++++|.+.+.
T Consensus 67 ~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 67 TMHRRTED----IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEecCCC----CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 65443221 2245555555543 2333 34567899999999999987664
No 31
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.74 E-value=4e-17 Score=135.49 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=81.6
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
++..++|.++ |++||++|+..+ ++|.|.+| ||+++.||+ +.+||+||++|||||.+.. +.++
T Consensus 2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~ 63 (137)
T cd03427 2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDN-----LKLV 63 (137)
T ss_pred eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeec-----ceEE
Confidence 4566777775 899999998765 78999998 999999999 8999999999999998763 2456
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEec-CcCCCCccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d-~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+.+.|..+.. ..+.+.++|.+... ..+. +.+|..+++|++++|+.++
T Consensus 64 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 64 GIIKFPFPGE---EERYGVFVFLATEFEGEPL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred EEEEEEcCCC---CcEEEEEEEEECCcccccC-CCCccccceEEcHhhcccc
Confidence 6666654421 23566677776542 2233 3456678999999998764
No 32
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=7.6e-17 Score=130.51 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=80.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
++.++|+++ +++||+||... .++|.|.+| |||++.||+ +++||+||++||||+.+... .+++
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~ 63 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEVG-----RLLT 63 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeeec-----eeEE
Confidence 567778875 89999999753 468999998 999999999 89999999999999997632 3455
Q ss_pred EEEEEcCCCC-CCcceEEEEEEEEEec-CcCCCCccccccEEEEcHHHHHHH
Q 022053 204 RILYKAPSDG-KWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 204 ~i~y~~~~~~-~~~ehei~~vf~~~~d-~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+.+..+..+ ....+.+.++|.+... ..+ .+++|+.+++|++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 64 VVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAAL 114 (122)
T ss_pred EEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhC
Confidence 4444332221 1222556666666543 333 44578999999999999876
No 33
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.73 E-value=8.2e-17 Score=136.14 Aligned_cols=118 Identities=22% Similarity=0.284 Sum_probs=88.5
Q ss_pred CceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 119 gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
.+.-++++++|+|.++++||+||... ..+|.|++| ||++++||+ +++||+||++||||+++..
T Consensus 10 ~~~~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~----- 72 (142)
T cd04700 10 EVEARAAGAVILNERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRP----- 72 (142)
T ss_pred ceeeeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeec-----
Confidence 55778999999998899999887543 258999999 999999999 8999999999999999763
Q ss_pred eeeeEEEEEEcCCCCCCcceEEEEEEEEEec-CcCCC-CccccccEEEEcHHHHHHHHHhc
Q 022053 199 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNP-NPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 199 l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d-~~i~~-~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
+.+++.+.+..+. + ...+.++|.+... ....+ ..+|+.+++|++++++.+++..+
T Consensus 73 ~~~~~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 73 VKFLGTYLGRFDD--G--VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred cEEEEEEEEEcCC--C--cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence 2456655444332 1 1345566766642 22221 23699999999999999998764
No 34
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1e-16 Score=132.01 Aligned_cols=112 Identities=22% Similarity=0.340 Sum_probs=82.4
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
+.++.++|+|++|++||+||... .++|.|.+| |||++.||+ +.+||+||++||||+++.. +.+
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~-----~~~ 64 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIEN-----VQF 64 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccc-----eEE
Confidence 45789999999999999999864 478999998 999999999 8999999999999998753 234
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEecC-cCC---CCccccccEEEEcHHHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVRDV-SVN---PNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~d~-~i~---~~~~EV~~~~Wvs~eEL~~l 253 (303)
++.+....+. . ..+.+..+|.+.... ... .+++|+.+++|+++++|.++
T Consensus 65 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 65 LTVTNDVFEE-E--GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEeEEeCC-C--CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 4433221111 1 224555556565422 222 25678999999999999875
No 35
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.72 E-value=2.6e-16 Score=133.42 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=82.8
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
+|.+++++|+|.+|++||+||+..+ |+|++| ||++++||+ +.+||+||++||||+.+..+ .
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~~-----~ 62 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDSV-----E 62 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCce-----E
Confidence 4678999999999999999998654 899998 999999999 89999999999999997532 2
Q ss_pred eeEE----EEEEcCCC---CCCc---ceEEEEEEEEEec---CcCCCC---ccccccEEEEcHHHHHHHHH
Q 022053 201 PLGR----ILYKAPSD---GKWG---EHELDYLLFIVRD---VSVNPN---PDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 201 ~l~~----i~y~~~~~---~~~~---ehei~~vf~~~~d---~~i~~~---~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.++. +.|..+.. ..|. .+...++|++... ..+.++ ++|+.+++|++++|+.+++.
T Consensus 63 ~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 63 IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 3332 23444321 1111 1334445544432 233333 57999999999999998743
No 36
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.4e-16 Score=129.96 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=80.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
++.++|+|++|++||+||...+..++|+|++| ||+++.||+ +.+||+||++||||+.+... ..++
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~~-----~~~~ 67 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTPF-----LRYP 67 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEee-----eeee
Confidence 56778888779999999998776789999998 999999999 89999999999999987632 2222
Q ss_pred EEEEEcCCCCCCcceEEE-EEEEEEecCcCCCCccccccEEEEcHHHHHHHHHh
Q 022053 204 RILYKAPSDGKWGEHELD-YLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~-~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
...+.... +.+... ++|.+........+++|+.+++|++++++..+...
T Consensus 68 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 68 STVTHEDS----GVYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEcCC----CEEEEEEEEEEeeecCCcccCChhheEEEEecHHHhhhhhcc
Confidence 22222111 113333 34444332223334578999999999999766544
No 37
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.3e-16 Score=130.37 Aligned_cols=107 Identities=22% Similarity=0.202 Sum_probs=78.5
Q ss_pred EEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEE
Q 022053 126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205 (303)
Q Consensus 126 sv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i 205 (303)
.++|+++ +++||+||+..+..+||.|++| ||+++.||+ +++||+||++||||+.+.. +.++..+
T Consensus 4 ~~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~l~~~ 67 (117)
T cd04691 4 VGVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPLS-----YTYLCSL 67 (117)
T ss_pred EEEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCccc-----ceEEEEE
Confidence 3344554 8999999988776799999998 999999999 8999999999999998642 3455544
Q ss_pred EEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHHh
Q 022053 206 LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 206 ~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
.+. . . .....++|.+.. +..+ ..+|+.+++|++++++..+...
T Consensus 68 ~~~--~--~--~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 68 YHP--T--S--ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred ecc--C--C--CeEEEEEEEEEEecCCC--CcccccccEEcCHHHcchhhhh
Confidence 332 1 1 134455565543 3333 3479999999999999877654
No 38
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1e-16 Score=131.86 Aligned_cols=115 Identities=30% Similarity=0.445 Sum_probs=83.1
Q ss_pred CceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 119 gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
.+.+.++.+++++.++++||++|+.. |.|++| ||+++.||+ +.+||+||++||||+.+...
T Consensus 4 ~~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~~---- 64 (132)
T cd04677 4 PLILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEEL---- 64 (132)
T ss_pred cccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeeee----
Confidence 45778899999999899999999743 789998 999999999 89999999999999988643
Q ss_pred eeeeEEE----EEEcCCCCCCcceEEEEEEEEEe--cCcCCCCccccccEEEEcHHHHHHHHH
Q 022053 199 FTPLGRI----LYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 199 l~~l~~i----~y~~~~~~~~~ehei~~vf~~~~--d~~i~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.+++.+ .|..+..+. .+.+..+|++.. +..+..+.+|+.+++|++++++.+++.
T Consensus 65 -~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 65 -ELLGVYSGKEFYVKPNGDD--EQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred -EEEEEecCCceeecCCCCc--EEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence 223221 233222221 233444444432 333456678999999999999987754
No 39
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.7e-16 Score=128.25 Aligned_cols=105 Identities=22% Similarity=0.222 Sum_probs=79.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc-cCCCCceeee
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPL 202 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~-~~~~~~l~~l 202 (303)
+++++|+|.+|++||+||+.. +.|.+| ||+++.||+ +++||+||++||||+.+. . +.++
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~-----~~~~ 61 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAVV-----AELL 61 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCccccc-----cceE
Confidence 578999999999999998743 389998 999999999 899999999999999976 3 2345
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEecC-cCCCCccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d~-~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+.+.+... ..+...++|.+.... ....+.+|+.+++|+++++|.++
T Consensus 62 ~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 62 GVYYHSAS-----GSWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred EEEecCCC-----CCceEEEEEEecccCCCccCCcccEEEEEEECHHHCccc
Confidence 55544322 113445667666532 22456689999999999999764
No 40
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=1.6e-16 Score=132.49 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=81.4
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
+|.++|+|.++++||+||... .+|.|++| ||+++.||+ +++||+||++|||||.+.. +.+++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~-----~~~l~ 63 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKN-----IRYVG 63 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeee-----eEEEe
Confidence 678888988899999998642 27899997 999999999 8999999999999999753 34554
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEec-CcCCCCccccccEEEEcHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~d-~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+.|..+ +.+.++|++..+ ..+.++++|+.+++|+++++|.++
T Consensus 64 ~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 64 SQPWPFP-------SSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ecCCCCC-------ceEEEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 4333221 344556666653 455667789999999999999997
No 41
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=4.1e-16 Score=128.21 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=76.2
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
+.+++++|+|.++++||.||... ++|+|.+| ||+++.||+ +.+||+||++||||+.+... ..
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~~~-----~~ 63 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTEFV-----SV 63 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCccee-----EE
Confidence 35788899998899999887643 78999998 999999999 89999999999999987522 22
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEe---cCcCCCCccccccEEEEcHHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKE 252 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~---d~~i~~~~~EV~~~~Wvs~eEL~~ 252 (303)
++...+ .+. .+. .....|.+.. +..+.++++|+.+++|+++++|.+
T Consensus 64 ~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 64 VGFRHA-HPG--AFG--KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred EEEEec-CCC--CcC--ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 332222 111 111 1222233322 234456678999999999999954
No 42
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.70 E-value=6.3e-16 Score=133.11 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=83.2
Q ss_pred ceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCce
Q 022053 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (303)
Q Consensus 120 l~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l 199 (303)
.+|.+++++|+|.+|++||+||+.. ||.|++| ||+++.||+ +.+||.||++||||+.+..+
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~~----- 66 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPEDV----- 66 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcCC----CCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccce-----
Confidence 3788999999999999999999742 6899999 899999999 89999999999999987532
Q ss_pred eeeEE----EEEEcCC------CCCCcceEEEEEEEEEe---cCcCCC---CccccccEEEEcHHHHHHHHH
Q 022053 200 TPLGR----ILYKAPS------DGKWGEHELDYLLFIVR---DVSVNP---NPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 200 ~~l~~----i~y~~~~------~~~~~ehei~~vf~~~~---d~~i~~---~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.+++. +.|..+. ..++. .+..++|++.. ...+.+ +.+|+.+++|++++|+.+++.
T Consensus 67 ~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 67 EILAETRDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred EEEEEcCCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch
Confidence 23332 3344332 11111 12334555543 223333 336999999999999988753
No 43
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.69 E-value=8.7e-16 Score=127.19 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=87.2
Q ss_pred EEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEE
Q 022053 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204 (303)
Q Consensus 125 vsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~ 204 (303)
+.+++. .++++||.||... .++.|.+| ||++++||+ +.+||+||++||||+.+... .+++.
T Consensus 3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~~ 63 (134)
T cd03675 3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEPT-----ALLGI 63 (134)
T ss_pred EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCcccccc-----eEEEE
Confidence 445554 4689999998654 56899998 999999999 89999999999999987532 34444
Q ss_pred EEEEcCCCCCCcceEEEEEEEEEecCc-C-CCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHH
Q 022053 205 ILYKAPSDGKWGEHELDYLLFIVRDVS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 279 (303)
Q Consensus 205 i~y~~~~~~~~~ehei~~vf~~~~d~~-i-~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~ 279 (303)
+.|..+..+ ...+.++|.+..... . ....+|+.++.|++++++.++... ..+|+.+..+..||.
T Consensus 64 ~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--------~~~~~~~~~i~~~l~ 129 (134)
T cd03675 64 YQWTAPDSD---TTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--------LRSPLVLRCIEDYLA 129 (134)
T ss_pred EEeecCCCC---eeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--------hcCchHHHHHHHHHh
Confidence 444433211 122344555554322 2 234468999999999999988652 357778888887764
No 44
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.67 E-value=1.4e-15 Score=124.73 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=78.4
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
|..++++|++ +|++||+||.. .+.|.+| |||++.||+ +.+||+||++||||+++.. ..+
T Consensus 1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~ 59 (125)
T cd04689 1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSD-----GRF 59 (125)
T ss_pred CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeec-----cEE
Confidence 4567777775 68999998853 2689998 999999999 8999999999999998763 345
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEecC----cCCCCccccccEEEEcHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVRDV----SVNPNPDEVAEYKYVNREQLK 251 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~d~----~i~~~~~EV~~~~Wvs~eEL~ 251 (303)
++.+.+.....+.+ .|.+.++|.+.... .....++|+.+++|++++|+.
T Consensus 60 l~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 60 LGAIENQWHEKGVR-THEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred EEEEeeeeccCCce-EEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 66554433333333 36777777776421 122345678999999999964
No 45
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=8.8e-16 Score=124.58 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=76.8
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
.+++++|+|++|++||+||+.. |.|++| ||+++.||+ +.+||+||++||||+.+... .++
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~~~-----~~~ 62 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVEVT-----GLV 62 (129)
T ss_pred ceEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeEee-----EEE
Confidence 4678888898899999999753 899998 999999999 89999999999999987532 222
Q ss_pred EEE-----EEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHH
Q 022053 203 GRI-----LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i-----~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+.+ .+..+. +.. .+.+.++|.+.. ........+|+.+++|++++++.++
T Consensus 63 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 63 GIYTGPVHVVTYPN-GDV-RQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEeecccceeecCC-CCc-EEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence 111 111111 111 245555565543 3333345678899999999998764
No 46
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.5e-15 Score=124.73 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=77.7
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
||++++++.+ ++|||+||.. .+.|.+| ||+++.||+ +.+||+||+.||||+.+... .+
T Consensus 2 ~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~ 59 (126)
T cd04688 2 VRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEIT-----RL 59 (126)
T ss_pred eEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceecc-----ee
Confidence 6787887764 5999999874 5799998 999999999 89999999999999987632 23
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEecC-cCCC-------CccccccEEEEcHHHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNP-------NPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~d~-~i~~-------~~~EV~~~~Wvs~eEL~~l 253 (303)
++.+.+..+.. +...+.++++|.+.... ...+ +.+|+.+++|++++++..+
T Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 60 LGVVENIFTYN-GKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred eEEEEEeeccC-CcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 44332111112 22236677777776532 2221 4578999999999998743
No 47
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.65 E-value=3e-15 Score=121.87 Aligned_cols=120 Identities=17% Similarity=0.251 Sum_probs=81.0
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
.+.++|.+.+|++||+||+... .++|+|++| ||++++||+ +.+||+||+.||+|+.+... ..++
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~-~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~~~-----~~~~ 69 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADA-HMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQHA-----TLFE 69 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCC-CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCceecc-----eEEE
Confidence 3445567778899999998654 589999998 999999999 78999999999999986532 3345
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 277 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~ 277 (303)
.+.+..+. . +-..++|.+.. +.. +.+.|..+++|++++++... .|.+-.+.+++.+
T Consensus 70 ~~~~~~~~-~----~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~~-----------~~p~~~~~~~~~~ 126 (129)
T PRK10776 70 KLEYEFPD-R----HITLWFWLVESWEGE--PWGKEGQPGRWVSQVALNAD-----------EFPPANEPIIAKL 126 (129)
T ss_pred EEEeeCCC-c----EEEEEEEEEEEECCc--cCCccCCccEEecHHHCccC-----------CCCcccHHHHHHH
Confidence 44444331 1 11123343332 222 23457889999999998653 3555555555544
No 48
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=3e-15 Score=123.36 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=76.4
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
.+++++|++ +|++||+||... .++.|.+| ||+++.||+ +++||+||+.||||+.+... ++..+
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~~---~~~~~ 64 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEIG---PLLFV 64 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCccccC---cEEEE
Confidence 356677776 589999998643 25789998 999999999 89999999999999998632 33333
Q ss_pred EEEEEEcCC-CCCCcceEEEEEEEEEecCcC------CCCccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPS-DGKWGEHELDYLLFIVRDVSV------NPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~-~~~~~ehei~~vf~~~~d~~i------~~~~~EV~~~~Wvs~eEL~~l 253 (303)
..+.+.... ......|.++++|.+...... .++ .|..+++|+++++|.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 65 REYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDI 121 (128)
T ss_pred EEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCC-CCEEeeEEEcHHHhCcc
Confidence 332222100 011123677787877653211 222 34568999999999765
No 49
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.65 E-value=2.5e-15 Score=123.50 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=77.5
Q ss_pred EEEEEEEEeCCC---eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCce
Q 022053 123 RAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (303)
Q Consensus 123 ravsv~I~n~~g---~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l 199 (303)
++++++|++.++ ++||.||+. |.|++| |||++.||+ +.+||+||++||||+.+..+.. +
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~--~ 64 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQLFI--V 64 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhhhh--h
Confidence 567777777554 688888874 889998 999999999 8999999999999999874321 1
Q ss_pred -eeeEEEEEEcCCCCCCcceEEEEEEEEEec--CcCCCCccccccEEEEcHHHHHHHHH
Q 022053 200 -TPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 200 -~~l~~i~y~~~~~~~~~ehei~~vf~~~~d--~~i~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.+...+.|.. ...+..+++|.+... ..+.++ +|+.+++|++++++.+++.
T Consensus 65 ~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 65 LGFKETLNYQV-----RGKLKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ccceeEEEccc-----cCcceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcC
Confidence 1112222221 112455566666543 345555 7999999999999988764
No 50
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=3.2e-15 Score=120.87 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=78.4
Q ss_pred EEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEE
Q 022053 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204 (303)
Q Consensus 125 vsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~ 204 (303)
+++++++.+|++||.||.. .|.|.+| ||++++||+ +++||+||++||||+.+.. ..+.+++.
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~---~~~~~~~~ 64 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDP---DSLEYLGT 64 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEEE
Confidence 5677778889999988863 3789998 999999999 8999999999999998752 23566666
Q ss_pred EEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHH
Q 022053 205 ILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 252 (303)
Q Consensus 205 i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~ 252 (303)
+.+....... .+...++|.+.....+.+ .+|+.+++|++++++..
T Consensus 65 ~~~~~~~~~~--~~~~~~~f~~~~~~~~~~-~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 65 FRAPAANEPG--VDVRATVYVAELTGEPVP-AAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EecccccCCC--cEEEEEEEEEcccCCcCC-CchhhccEEecHHHccc
Confidence 6443222221 245667777765444433 46999999999999844
No 51
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.64 E-value=4.9e-15 Score=118.96 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=79.0
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
++.++|+|++|++||+||+..+ .++|+|.+| ||+++.+|+ +++||+||+.||+|+.+.. ..+++
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~-----~~~~~ 66 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEV-----GELLA 66 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEec-----cceEE
Confidence 3456667877999999998776 689999998 999999999 8999999999999998753 23455
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+.+..+. .+...++|.+..... ...+.|..++.|++++++.++
T Consensus 67 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 67 TVEHDYPD-----KRVTLHVFLVELWSG-EPQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred EEEeeCCC-----CeEEEEEEEEeeeCC-CcccccCceEEEeeHHHcccC
Confidence 55554431 133445565543221 122467889999999999653
No 52
>PLN02325 nudix hydrolase
Probab=99.63 E-value=5.5e-15 Score=125.67 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=80.0
Q ss_pred ceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCce
Q 022053 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (303)
Q Consensus 120 l~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l 199 (303)
..+.++.++|++. |+|||+||.... .-|.|.+| ||+++.||+ +.+||+||++|||||.+...
T Consensus 7 ~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~~----- 68 (144)
T PLN02325 7 IPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEKI----- 68 (144)
T ss_pred CCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcce-----
Confidence 3567778888874 799999998542 34899998 999999999 89999999999999987632
Q ss_pred eeeEEEEEEcCCCCCCcceEEEEEEEEEe-cC---cCCCCccccccEEEEcHHHHHHH
Q 022053 200 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DV---SVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 200 ~~l~~i~y~~~~~~~~~ehei~~vf~~~~-d~---~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+++.+.+....... ..|.+..+|.+.. +. ....+++|+.+++|+++++|...
T Consensus 69 ~~l~~~~~~~~~~~~-~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 69 ELLTVTNNVFLEEPK-PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred EEEEEecceeecCCC-CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 344433221111112 2255555555553 22 22345667889999999999764
No 53
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.63 E-value=5.7e-15 Score=117.25 Aligned_cols=109 Identities=22% Similarity=0.317 Sum_probs=82.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
+++++++|.++++||+||... ++|+|.+| ||+++.+|+ +.++|+||+.||+|+.+.. ...++
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~-----~~~~~ 63 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDV-----LRLLG 63 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCcccee-----eeEEE
Confidence 577888888899999999866 78999998 899999999 8999999999999998752 13344
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEecCc-C-CCCccccccEEEEcHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVRDVS-V-NPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~d~~-i-~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+.|..+. .+.+.+.++|.+..... . ..+..|+.+++|++++++.++
T Consensus 64 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 64 VYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence 44454432 12355666776664322 2 256678899999999999874
No 54
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.63 E-value=9.5e-15 Score=120.93 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=79.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
++.+++ +.+|++||+||...+ .++|+|.+| ||+++.||+ +.+||+||+.||+|+.+... .+++
T Consensus 6 ~~~~ii-~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~~-----~~~~ 68 (135)
T PRK10546 6 VVAAII-ERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATVG-----EYVA 68 (135)
T ss_pred EEEEEE-ecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccccc-----eeEE
Confidence 344444 567899999997654 489999998 999999999 78999999999999987532 2344
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 278 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l 278 (303)
.+.+.... .+...++|.+.. .+.+ ...|..+++|++++++.++ .+.|-.+.+++.|+
T Consensus 69 ~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~ 126 (135)
T PRK10546 69 SHQREVSG-----RRIHLHAWHVPDFHGEL--QAHEHQALVWCTPEEALRY-----------PLAPADIPLLEAFM 126 (135)
T ss_pred EEEEecCC-----cEEEEEEEEEEEecCcc--cccccceeEEcCHHHcccC-----------CCCcCcHHHHHHHH
Confidence 44443221 111223343332 2222 2356788999999998764 34555555666553
No 55
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=4.1e-15 Score=123.02 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
+++++|+|.+|++||+||... .+++.|.+| ||+++.||+ +++||+||++||||+.+... .+++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~-----~~~~ 64 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEPT-----TLLS 64 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeecc-----eEEE
Confidence 578888998899999999743 368999999 999999999 89999999999999988632 2333
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEe-cCcCC---CCccccccEEEEcHHHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVR-DVSVN---PNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~---~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.. ..+ .+.+.++|.+.. ++.+. .+.+|+.+++|++++||...+.
T Consensus 65 ~~--~~~------~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~~ 112 (123)
T cd04671 65 VE--EQG------GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPLR 112 (123)
T ss_pred EE--ccC------CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCccc
Confidence 21 111 245566676654 22222 2345788999999999954433
No 56
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=1e-14 Score=122.56 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=79.0
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
|++.++|+|.+|+|||++|...+..+++.|.+| ||+++.||+ +.+||+||+.||||+.+..+ ..+...
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~~~--~~~~~~ 68 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVADL--GPPVWR 68 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCccccc--cceEEE
Confidence 589999999999999999886654578999997 999999999 89999999999999987322 122122
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEec-CcCC------CCccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVN------PNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d-~~i~------~~~~EV~~~~Wvs~eEL~~l 253 (303)
....|.... ..+ +...++|.+... ..+. ...+++..++|++++||.+.
T Consensus 69 ~~~~f~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 69 RDAAFTFLG-VDG--RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEecC-ccc--eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 221122221 111 334455665532 1211 11234678999999999774
No 57
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=7.7e-15 Score=120.24 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=76.2
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
.+.++|+++ |++||.||.. .|.|.+| ||++++||+ +.+||+||++||||+.+.. . .+++
T Consensus 4 ~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~~---~--~~~~ 62 (123)
T cd04672 4 DVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVKV---R--KLAA 62 (123)
T ss_pred eEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeeeE---e--EEEE
Confidence 567788886 8998888864 5899998 999999999 8999999999999998742 1 2233
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.+.+..........|.+..+|.+.. +..+.++ +|+.+++|+++++|.++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l~~ 114 (123)
T cd04672 63 VDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPN-IETSEVGFFALDDLPPLSE 114 (123)
T ss_pred EeccccccCCCCceEEEEEEEEEEecCCcccCC-CceeeeEEECHHHCccccc
Confidence 2211111111122245555566654 3445555 7899999999999977643
No 58
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=1.6e-14 Score=119.88 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=72.1
Q ss_pred eCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcC
Q 022053 131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 210 (303)
Q Consensus 131 n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~ 210 (303)
+.++++||.||... ++|.|.+| ||+++.||+ +.+||+||++|||||.+..+.. ..++.. .|..+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~~--~~~~~~-~~~~~ 74 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPELYN--ADYLEQ-FYEAN 74 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccccc--ccceee-EeecC
Confidence 45679999999854 78999987 999999999 8999999999999998764311 111222 23321
Q ss_pred CCCCCcceEEEEEEEEEe-cC-cCCCCccccccEEEEcHHHHHHHHH
Q 022053 211 SDGKWGEHELDYLLFIVR-DV-SVNPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 211 ~~~~~~ehei~~vf~~~~-d~-~i~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
. . .....++|++.. .. .+.+ .+|+.+++|++++++.+++.
T Consensus 75 ~-~---~~~~~~~f~~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 75 D-N---RILMAPVFVGFVPPHQEVVL-NHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred C-c---eEEEEEEEEEEecCCCcccc-CchhcccEecCHHHHHHhcC
Confidence 1 1 123344555543 22 2333 37999999999999998754
No 59
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.60 E-value=1.5e-14 Score=123.23 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=74.1
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 124 avsv~I~n~~-g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
+++++|+|.+ |++||.||.. ++.|++| ||+++.||+ +.+||+|||+||||+.+... ...
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~~-----~~~ 62 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISKY-----IDK 62 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCccceec-----ccc
Confidence 5778888875 6999998752 3589998 999999999 89999999999999987632 111
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEe-cC--cCCCC-ccccccEEEEcHHHHHHHHHh
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVR-DV--SVNPN-PDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~-d~--~i~~~-~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
..|.... ...+ ..++|++.. +. ...++ .+|+.+++|++++++.+++..
T Consensus 63 --~~~~~~~---~~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 63 --DDYIELI---IRGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred --ceeeecc---cCCc-EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 1122111 1112 233454432 22 22233 479999999999999999876
No 60
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.9e-14 Score=116.10 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=70.1
Q ss_pred eCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcC
Q 022053 131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 210 (303)
Q Consensus 131 n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~ 210 (303)
..++++||+||.. |.|.+| ||+++.||+ +.+||.||++||||+.+. .+.+++.+ ..
T Consensus 8 ~~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~-----~~~~~~~~--~~- 63 (112)
T cd04667 8 RRGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGL-----DLLYLFHV--DG- 63 (112)
T ss_pred ecCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCccc-----ceEEEEEE--eC-
Confidence 3468999999862 899998 999999999 899999999999999865 23445443 21
Q ss_pred CCCCCcceEEEEEEEEEecC-cCCCCccccccEEEEcHHHHHHHHH
Q 022053 211 SDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 211 ~~~~~~ehei~~vf~~~~d~-~i~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.+.+.++|.+.... .....++|+.+++|++++++.++..
T Consensus 64 ------~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 64 ------GSTRHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred ------CCEEEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhccc
Confidence 13445666665432 2223457999999999999988643
No 61
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.58 E-value=5.3e-14 Score=116.42 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=77.4
Q ss_pred EEEEEEEeCC---CeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 124 AFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 124 avsv~I~n~~---g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
++++++++.+ +++||.+|... +.|.+| ||+++.||+ +.+||+||++||||+..... +.
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~ 62 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KR 62 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ce
Confidence 3455555543 57888887532 899998 999999999 89999999999999986522 25
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEEecCcCC-CCccccccEEEEcHHHHHHHHHh
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN-PNPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~-~~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
+++.+.|..+..+ ...+...++|.+....... ....|..+++|++++|+.+++..
T Consensus 63 ~l~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 63 PLGRFEYRKRSKN-RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEEeeecCCC-CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence 6777766554321 1123344555555432222 23356789999999999988764
No 62
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.58 E-value=1.4e-14 Score=134.63 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=79.9
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
..+|.++|.+ ++++||+||.... +|+|.+| ||++++||+ +++||+||++|||||.+.. +.+
T Consensus 132 ~paViv~V~~-~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~ 192 (256)
T PRK00241 132 APCIIVAVRR-GDEILLARHPRHR---NGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRY 192 (256)
T ss_pred CCEEEEEEEe-CCEEEEEEccCCC---CCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEE
Confidence 3455555554 5899999886432 7899998 999999999 8999999999999998763 456
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
++...|..+ +.+.+.|.+.. ...+.++++|+.+++|++++|+..+
T Consensus 193 ~~s~~~~~p-------~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 193 VGSQPWPFP-------HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred EEeEeecCC-------CeEEEEEEEEecCCcccCCcccEEEEEEECHHHCccc
Confidence 666544332 34555666664 3456777789999999999998654
No 63
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=2.2e-14 Score=117.83 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=70.3
Q ss_pred EEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEE
Q 022053 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204 (303)
Q Consensus 125 vsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~ 204 (303)
++++|++.+|++||+||... ..+.|.+| ||+++.||+ +.+||+||++||||+.+... ..++.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~~-----~~~~~ 64 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRVE-----EIFLI 64 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEeee-----eEEEE
Confidence 45666677789999998653 25899998 999999999 89999999999999998521 22333
Q ss_pred EEEEcCCCCCCcceEEEEEEEEEe-cCcCCC---------CccccccEEEEcHHHHHHH
Q 022053 205 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNP---------NPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 205 i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~---------~~~EV~~~~Wvs~eEL~~l 253 (303)
+.+ + +...++|.+.. .+.+.. +.++..+++|+++++|.++
T Consensus 65 ~~~--~-------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 65 VNQ--N-------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred Eee--C-------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 323 1 12245565543 222211 1234567999999999865
No 64
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.54 E-value=1e-13 Score=123.48 Aligned_cols=114 Identities=20% Similarity=0.077 Sum_probs=80.1
Q ss_pred EEEEEEE--eCCCeEEEEEecCCCCcCCCceecccCccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 124 AFSVFLF--NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 124 avsv~I~--n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~g-Es~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
|+.++.+ +.++.+|++||+..-..++|.|++| ||+++++ |+ +++||+||++||||+.+. .+.
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~---------~~~tA~REl~EEtGl~~~-----~~~ 96 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS---------LIATALREAQEEVAIPPS-----AVE 96 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc---------HHHHHHHHHHHHHCCCcc-----ceE
Confidence 4444434 2345899999987766789999998 9999986 45 799999999999999876 346
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHHHHH
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~ll~ 255 (303)
.++.+...... .++ +...+++++..+....++++|+.++.|++++++.++..
T Consensus 97 ~lg~l~~~~~~-~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 97 VIGVLPPVDSS-TGY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EEEEeeeeecc-CCc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 77776422221 222 11122233333445677889999999999999988743
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=2.8e-13 Score=110.58 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=73.6
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
..+.++|++.+|++||+||.... .++|+|++| ||+++.||+ +++|++||+.||+|+.+... .++
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~-~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~~~-----~~~ 68 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGH-MFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQHFS-----EFE 68 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCC-CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcceee-----eEE
Confidence 34455556777899999998654 589999998 999999999 78999999999999986521 234
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
+.+.+..+. .+...++|.+..... .+.+.|..+++|++++++.++
T Consensus 69 ~~~~h~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 69 KLEYEFYPR-----HITLWFWLLERWEGG-PPGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEEECCC-----cEEEEEEEEEEEcCC-CcCcccccccEEeCHHHCCcc
Confidence 443332211 122334444443221 122345678899999998764
No 66
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.52 E-value=1.8e-13 Score=113.51 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=74.5
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceee
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~ 201 (303)
..++.+++++. +++||.||... ..+|.|++| ||+++.||+ +++||+||++||||+++... ..
T Consensus 13 ~~~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~~~-----~~ 74 (130)
T cd04511 13 KIIVGCVPEWE-GKVLLCRRAIE--PRHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVEID-----GL 74 (130)
T ss_pred cEEEEEEEecC-CEEEEEEecCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEEee-----eE
Confidence 34566667764 89999999754 367999998 999999999 89999999999999987521 22
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEec-CcCCCCccccccEEEEcHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLK 251 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~d-~~i~~~~~EV~~~~Wvs~eEL~ 251 (303)
++. |..+. .+.+.++|.+... ..+..+ .|..+++|+++++|.
T Consensus 75 ~~~--~~~~~-----~~~~~~~f~~~~~~~~~~~~-~e~~~~~~~~~~~l~ 117 (130)
T cd04511 75 YAV--YSVPH-----ISQVYMFYRARLLDLDFAPG-PESLEVRLFTEEEIP 117 (130)
T ss_pred EEE--EecCC-----ceEEEEEEEEEEcCCcccCC-cchhceEEECHHHCC
Confidence 332 33221 1345566666653 333333 578899999999995
No 67
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.51 E-value=1.3e-13 Score=115.27 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=73.0
Q ss_pred CCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCC
Q 022053 133 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 212 (303)
Q Consensus 133 ~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~ 212 (303)
++++||.||.... .|.|.+| ||++++||+ +.+||+||+.||||+.+... +-....++.+.|..+..
T Consensus 12 ~~~~Llvk~~~~~---~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~ 77 (132)
T cd04661 12 DTLVLLVQQKVGS---QNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKA 77 (132)
T ss_pred CcEEEEEEeecCC---CCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcc
Confidence 4678888886432 5899999 999999999 89999999999999976521 00011233344544321
Q ss_pred CCC--cceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHHh
Q 022053 213 GKW--GEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 213 ~~~--~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
... ..+...++|.+.. ++.+.++ +|+.+++|++++||.+++..
T Consensus 78 ~~~~~~~~~~~~~f~~~~~~g~~~~~-~e~~~~~W~~~~el~~~l~~ 123 (132)
T cd04661 78 VRNEGIVGAKVFFFKARYMSGQFELS-QNQVDFKWLAKEELQKYLNP 123 (132)
T ss_pred cccccCcccEEEEEEEEEecCccccC-CCcceeEecCHHHHHhhcCH
Confidence 100 1123456666654 4444443 78999999999999987653
No 68
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.51 E-value=8.8e-13 Score=116.46 Aligned_cols=114 Identities=20% Similarity=0.103 Sum_probs=84.2
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
.+|.|+.+++++++||.|+... ...++.|++| ||++++||+ +++||+|||+||||+.+. .+.++
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~-----~l~~l 111 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAA-GTERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGAR-----QLTFL 111 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCc-----ceEEE
Confidence 4677777887888888776432 2356789998 999999999 899999999999999876 45677
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEec--CcCCCCccccccEEEEcHHHHHHHHHhc
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d--~~i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
+.+.+ .+ +.. .+.+++|++... .....++.|..++.|++++++.+++.++
T Consensus 112 ~~~~~-~~---~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 112 KELSL-AP---SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred EEEec-CC---Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 76532 22 222 345667776532 1234456677889999999999999974
No 69
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=6.6e-13 Score=110.55 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=72.4
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
++.++|+++ |+|||.+|.. .+.|.+| ||+++.||+ +.+||+||++||||+.+... ...++
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~----~~~l~ 61 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATNIRV----IEKFG 61 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCccccc----ceEEE
Confidence 567777774 8999988753 2589998 999999999 89999999999999986321 12344
Q ss_pred EEEEEcC--CCCCCcceEEEEEEEEEecC---cCCCCcccc---ccEEEEcHHHHHHHHH
Q 022053 204 RILYKAP--SDGKWGEHELDYLLFIVRDV---SVNPNPDEV---AEYKYVNREQLKELLR 255 (303)
Q Consensus 204 ~i~y~~~--~~~~~~ehei~~vf~~~~d~---~i~~~~~EV---~~~~Wvs~eEL~~ll~ 255 (303)
.+....+ ..+.-.-+.+.++|.+.... .+.+++.|. ..++|++++|+.+-..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~ 121 (131)
T cd04686 62 TYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNE 121 (131)
T ss_pred EEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhH
Confidence 3321111 11111124456667776432 233443343 3589999999877533
No 70
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.48 E-value=1.2e-12 Score=126.16 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=87.0
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
.+.++.++|++ +|+|||.||.... .+|+|.+| ||++++||+ +++||+||++|||||++....+. ..
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~~~~l~-~~ 267 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLPEPVLR-GS 267 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccccccc-ee
Confidence 34666676665 6899999997643 47999998 999999999 89999999999999987532110 00
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEEec-Cc-C-CCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHH
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIVRD-VS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 277 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~~d-~~-i-~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~ 277 (303)
......|..+... ...+.+.++|++... .. + ....+|+.+++|++++++..+-. .+......+++.|
T Consensus 268 ~~~~~~f~~p~r~-~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~---------~~~~dh~~ii~~~ 337 (340)
T PRK05379 268 IRDQQVFDHPGRS-LRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRD---------RMFEDHFQIITHF 337 (340)
T ss_pred eeeeEEEcCCCCC-CCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhh---------hhhhHHHHHHHHH
Confidence 1111223333211 112456666666532 21 1 12346899999999999977511 2335566677766
Q ss_pred H
Q 022053 278 L 278 (303)
Q Consensus 278 l 278 (303)
+
T Consensus 338 ~ 338 (340)
T PRK05379 338 L 338 (340)
T ss_pred h
Confidence 5
No 71
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.47 E-value=7.4e-13 Score=113.12 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=80.3
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
...++.+++... |+|||.||+.. .++|+|.+| ||+++.||+ +++||.||++||||+++..+ .
T Consensus 9 p~~~v~~~i~~~-~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~~-----~ 70 (145)
T COG1051 9 PLVAVGALIVRN-GRILLVRRANE--PGAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRVL-----E 70 (145)
T ss_pred cceeeeEEEEeC-CEEEEEEecCC--CCCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCcccce-----e
Confidence 556777777765 59999999865 367999998 999999999 89999999999999996532 3
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCC-ccccccEEEEcHHHHHHH
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPN-PDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~-~~EV~~~~Wvs~eEL~~l 253 (303)
.+.. |..+..+..+ |.+.++|++.. ...+... .++.....|++.++|..+
T Consensus 71 ~~~v--~~~~~rd~r~-~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 71 LLAV--FDDPGRDPRG-HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred EEEE--ecCCCCCCce-eEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence 3433 3444322222 55555555554 3433333 347889999999999775
No 72
>PLN02709 nudix hydrolase
Probab=99.45 E-value=9.5e-13 Score=119.89 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=81.9
Q ss_pred CceeEEEEEEEEeC------CCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 022053 119 NLLHRAFSVFLFNS------KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (303)
Q Consensus 119 gl~Hravsv~I~n~------~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~ 192 (303)
+..+-||.+.++.. +..|||.+|+.....+||.|.+| ||+++++|.. +.+||+||++||+||+..
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPS 100 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCch
Confidence 44567788877753 23799999998777799999999 9999998643 789999999999999876
Q ss_pred cCCCCceeeeEEEEE-EcCCCCCCcceEEE-EEEEEEe--cCcCCCCccccccEEEEcHHHHHHH
Q 022053 193 DVPVDEFTPLGRILY-KAPSDGKWGEHELD-YLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 193 ~~~~~~l~~l~~i~y-~~~~~~~~~ehei~-~vf~~~~--d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+ ..++.+.. ..+. + ..+. ++.++.. ...+.+|++||+++.||++++|.+.
T Consensus 101 ~v-----~vlg~L~~~~t~s--g---~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 101 LV-----TIISVLEPFVNKK--G---MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred he-----EEeeecCCeECCC--C---CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 33 34444321 1111 1 2222 2333332 3345688999999999999998753
No 73
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.42 E-value=1.3e-11 Score=110.95 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=81.6
Q ss_pred EEEEEEEEeCC-CeEEEEE--ecCC-C-CcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCC
Q 022053 123 RAFSVFLFNSK-YELLLQQ--RSGT-K-VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197 (303)
Q Consensus 123 ravsv~I~n~~-g~lLLqq--Rs~~-K-~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~ 197 (303)
-+|.|+.++++ ++|+|.+ |..- + ...+-.|++| +|.+++||+ +++||+|||.||||+.+.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~----- 114 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVG----- 114 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceee-----
Confidence 36777778764 6877754 4321 1 0123579998 899999999 899999999999999875
Q ss_pred ceeeeEEEEEEcCCCCCCcceEEEEEEEEEecC----c--CCCCccccccEEEEcHHHHHHHHHhc
Q 022053 198 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 198 ~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~----~--i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
++.+++.+ |..+ ++. .+..|+|++..+. . ...+.+|..++.|++++++.+++.++
T Consensus 115 ~~~~l~~~-~~sp---g~~-~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 115 RTKPVLSY-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred EEEEEEEE-EcCC---CcC-ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 45566654 4433 333 4667888876421 1 23456777789999999999999874
No 74
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.39 E-value=3.6e-12 Score=113.10 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=81.2
Q ss_pred EEEEEEEeCC-CeEEEEEecCCC----CcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 124 AFSVFLFNSK-YELLLQQRSGTK----VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 124 avsv~I~n~~-g~lLLqqRs~~K----~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
++.+++++++ +++||.+.-... ..-+..|++| ||+++.||+ +++||+|||+||||+.+. .
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~-----~ 110 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVK-----N 110 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceec-----c
Confidence 6777777754 688887642211 1136799998 999999999 899999999999999986 3
Q ss_pred eeeeEEEEEEcCCCCCCcceEEEEEEEEEecCc-----CCCCccccccEEEEcHHHHHHHHHhc
Q 022053 199 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-----VNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 199 l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~~-----i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
+.+++.+ |..+ +. ..+..++|++..+.. -...++|..++.|++++++.+++.++
T Consensus 111 ~~~~~~~-~~~~---g~-~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 111 LRKLLSF-YSSP---GG-VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred eEEEEEE-EcCC---CC-CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 4566654 4333 22 257788888874321 12234566789999999999999975
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.39 E-value=6.4e-12 Score=118.80 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=74.6
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 123 ravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
..+.++|++.+|++||+||.... .++|+|++| ||+++.||+ +.+||.||++||+|+.+... ..+
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~l 69 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVTAA-----RPL 69 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCceecc-----eeE
Confidence 34455567777899999997654 589999998 999999999 79999999999999986532 234
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 252 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~ 252 (303)
..+.+..+. . +...++|.+.... ..++..|..+++|++++++.+
T Consensus 70 ~~~~h~~~~-~----~~~i~~y~~~~~~-~~~~~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 70 ITVRHDYPD-K----RVRLDVRRVTAWQ-GEPHGREGQPLAWVAPDELAV 113 (312)
T ss_pred EEEEEEcCC-C----eEEEEEEEEEEec-CcccCccCCccEEecHHHccc
Confidence 443333221 1 2223445443321 123445778899999999875
No 76
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=2.3e-12 Score=117.53 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=126.3
Q ss_pred cCeEEEEcCCCcEEeeeeccccchhhhhccCCceeEEEEE--EEEeCC-C--eEEEEEecCCCCcCCCceecccCccCCC
Q 022053 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV--FLFNSK-Y--ELLLQQRSGTKVTFPLVWTNTCCSHPLY 162 (303)
Q Consensus 88 eE~~~vvDe~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv--~I~n~~-g--~lLLqqRs~~K~~~PG~W~~p~gGhve~ 162 (303)
.|...+| .+.+++=.+.|....+ .|.+.-++++ .|.+++ | +++++|||.+|.+|||+||+.+||++..
T Consensus 104 ne~Y~v~-~~kkp~l~vERa~~~l------fGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~ 176 (306)
T KOG4313|consen 104 NELYTVY-KSKKPVLAVERAATPL------FGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSV 176 (306)
T ss_pred ceeeEEE-ecCcceeEeeecccce------eeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhcccccc
Confidence 4567777 8889999988887654 4556666655 455554 3 6999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEe--cCcCCCCccccc
Q 022053 163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVA 240 (303)
Q Consensus 163 gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~--d~~i~~~~~EV~ 240 (303)
|-. ..++|+.|..||..|+.+. .+.+...|.+.|-.-....|.-.+..|+|-+.. +.-+++++.||+
T Consensus 177 g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~ 245 (306)
T KOG4313|consen 177 GFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQ 245 (306)
T ss_pred Cch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCcee
Confidence 998 8999999999999999842 256777777766522222233356778887765 455678889999
Q ss_pred cEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHH
Q 022053 241 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 279 (303)
Q Consensus 241 ~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~ 279 (303)
.+..+++.|-.+.+.. ..|.|.+.+++-+||.
T Consensus 246 ~F~Lltl~~~v~~l~~-------k~FKpncAlV~iDfli 277 (306)
T KOG4313|consen 246 AFELLTLKDCVERLFT-------KDFKPNCALVVIDFLI 277 (306)
T ss_pred eEeeecHHHHHHHHHh-------hccCCCcceEEEEEee
Confidence 9999999998776665 2688888777655543
No 77
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.32 E-value=2.1e-11 Score=102.14 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=46.0
Q ss_pred EEEEEEEe--C-CCeEEEEEecCC--CCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 022053 124 AFSVFLFN--S-KYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (303)
Q Consensus 124 avsv~I~n--~-~g~lLLqqRs~~--K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~ 192 (303)
++++++++ + ..+|||++|... +...+|.|++| ||+++.||+ +.+||+||++||||+.+.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence 45566654 2 236999887433 22457999998 999999999 899999999999999875
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.32 E-value=4.3e-12 Score=118.50 Aligned_cols=135 Identities=16% Similarity=0.295 Sum_probs=92.6
Q ss_pred CceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 119 gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
.-.-.++-|.|.+. +++||-++.. ++||+++.. +|.|++||| .++|+.||++||+||.+..
T Consensus 141 PR~dP~vIv~v~~~-~~ilLa~~~~---h~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~----- 201 (279)
T COG2816 141 PRIDPCVIVAVIRG-DEILLARHPR---HFPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKN----- 201 (279)
T ss_pred CCCCCeEEEEEecC-CceeecCCCC---CCCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEee-----
Confidence 44456777777765 4477776654 459999986 899999999 9999999999999999874
Q ss_pred eeeeEEEEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHHHHHHHhc-cCCCCCcccCHHHHHHHHH
Q 022053 199 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKA-DAGEEGLKLSPWFRLVVDN 276 (303)
Q Consensus 199 l~~l~~i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~-~~~~~~~~ftPw~~~i~~~ 276 (303)
+++++.-.+..|. -+.--|++.. .++++++..|+.+.+|++.+|+..++... +. ....+.|.+..+..+
T Consensus 202 vrY~~SQPWPfP~-------SLMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~~~~~--~~~li~~~~~~ia~~ 272 (279)
T COG2816 202 VRYVGSQPWPFPH-------SLMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPPDGTI--ARRLIEPTLAAIARE 272 (279)
T ss_pred eeEEeccCCCCch-------hhhhhheeeeccccccCCcchhhhccccCHhHHhhhcCCCCCc--ccccccchHHHHHHH
Confidence 3565554444432 2222244444 46689999999999999999976666542 11 123455555555555
Q ss_pred HHHHH
Q 022053 277 FLFKW 281 (303)
Q Consensus 277 ~l~~w 281 (303)
..+.|
T Consensus 273 ~~~~~ 277 (279)
T COG2816 273 LIKAW 277 (279)
T ss_pred HHhhh
Confidence 54444
No 79
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.27 E-value=2.2e-10 Score=102.24 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=79.8
Q ss_pred EEEEEEEEeC-CCeEEEEE--ecCC-CCc--CCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCC
Q 022053 123 RAFSVFLFNS-KYELLLQQ--RSGT-KVT--FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 196 (303)
Q Consensus 123 ravsv~I~n~-~g~lLLqq--Rs~~-K~~--~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~ 196 (303)
.++.|+++++ +++++|.+ |..- ... -+-.|++| +|.++.+ + +++||+|||+||||+.+.
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~---- 110 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVG---- 110 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccc----
Confidence 3677777876 56877765 3321 000 12378887 8999864 6 799999999999999875
Q ss_pred CceeeeEEEEEEcCCCCCCcceEEEEEEEEEecC--c---CCCCccccccEEEEcHHHHHHHHHhc
Q 022053 197 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV--S---VNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 197 ~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~d~--~---i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
++.+++.+ |..| +.. .+..|+|++..+. . ...+++|..++.|++++|+.+++.++
T Consensus 111 -~~~~l~~~-~~sp---G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 111 -EVRKLFEL-YMSP---GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred -eEEEeeEE-EcCC---ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 45677665 5444 333 5778888887421 1 12456788899999999999999975
No 80
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.24 E-value=1.2e-10 Score=96.21 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=69.8
Q ss_pred EEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEE
Q 022053 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204 (303)
Q Consensus 125 vsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~ 204 (303)
|.++++++ +++||.++. .+.|++| ||+++.||+ +++||+||++||+|+.+. .+.+++.
T Consensus 3 v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~-----~~~~l~~ 60 (118)
T cd04665 3 VLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELG-----SLTLVGY 60 (118)
T ss_pred EEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccC-----ceEEEEE
Confidence 45666654 788888775 2579998 999999999 899999999999999975 3467776
Q ss_pred EEEEcCCCCCCcceEEEEEEEEEe-cCcCCCCccccccEEEEcHHHH
Q 022053 205 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQL 250 (303)
Q Consensus 205 i~y~~~~~~~~~ehei~~vf~~~~-d~~i~~~~~EV~~~~Wvs~eEL 250 (303)
+.+.. .. .....++|++.. .........|+....|++.+..
T Consensus 61 ~~~~~--~~---~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 61 YQVDL--FE---SGFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEecC--CC---CcEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence 54432 11 133455666654 2322223489999999996654
No 81
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.22 E-value=4.6e-10 Score=97.33 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=74.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
+|.++..+ ++++||.++.. ..|++| ||++++||+ +++||+|||+||||+.+. .+.+++
T Consensus 26 ~V~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt---------~~eaA~REl~EETG~~~~-----~~~~lg 83 (156)
T TIGR02705 26 HVLVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET---------SKEAAIREVMEETGAIVK-----ELHYIG 83 (156)
T ss_pred EEEEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcEee-----eeEEEE
Confidence 44444454 45777776542 359998 999999999 899999999999999875 456787
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEE-EEcHHHHHHHHHhc
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYK-YVNREQLKELLRKA 257 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~-Wvs~eEL~~ll~~~ 257 (303)
.+.. .+ +. .....++|++... ..... +|..+.. +++++++.+++..+
T Consensus 84 ~~~~-~~---~~-~~~~~~vf~A~~~-~~~~~-~e~~E~~~~~~~~~~~~~~~~g 131 (156)
T TIGR02705 84 QYEV-EG---ES-TDFVKDVYFAEVS-ALESK-DDYLETKGPVLLQEIPDIIKAD 131 (156)
T ss_pred EEEe-cC---CC-cEEEEEEEEEEEe-ccccC-CCceeeEeEEEHHHHHHHHhcC
Confidence 6533 22 11 2567778888754 22333 5555666 79999999999875
No 82
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.16 E-value=2.4e-11 Score=114.47 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=106.5
Q ss_pred EEEEcCCCcEEeeeeccccc-----hhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCC
Q 022053 91 CILVDENDRVVGHENKYNCH-----LMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES 165 (303)
Q Consensus 91 ~~vvDe~d~~iG~~tr~~~H-----~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs 165 (303)
|.-...--++.-.++|.+|- ..+.+ ....-.+|-+.|++.+|+.+|..| .+..-||+|+.+ +|.+++||+
T Consensus 153 Cp~CG~~tkp~e~g~k~~Cs~~~C~~~n~~--yPr~dPvVIm~li~~d~~~~LL~R--~~r~~~gl~t~l-AGFlEpGES 227 (345)
T KOG3084|consen 153 CPGCGSPTKPEEAGTKLQCSDETCPSCNVI--YPRTDPVVIMLLIDHDGKHALLGR--QKRYPPGLWTCL-AGFLEPGES 227 (345)
T ss_pred CcccCCCcccccCCccceeecccCCcCCee--ccCCCCeEEEEEEcCCCCEeeeec--ccCCCCchhhhh-hccCCcccc
Confidence 55555555555556666654 10111 122345677788899987666566 355668999997 899999999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCc--ceEEE-EEE-EEEecCcCCCCcc-ccc
Q 022053 166 ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELD-YLL-FIVRDVSVNPNPD-EVA 240 (303)
Q Consensus 166 ~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~--ehei~-~vf-~~~~d~~i~~~~~-EV~ 240 (303)
++|||+||++||+||+++.+ . |.+.. .|. ...+. .++ +++.+..++.+.+ |..
T Consensus 228 ---------~eeav~REtwEEtGi~V~~I-----~------~~asQ--PWP~~p~SLMIgc~ala~~~~~I~vd~dlEle 285 (345)
T KOG3084|consen 228 ---------IEEAVRRETWEETGIEVEVI-----S------YVASQ--PWPLMPQSLMIGCLALAKLNGKISVDKDLELE 285 (345)
T ss_pred ---------HHHHHHHHHHHHhCceeeeE-----e------eeecC--CCCCCchHHHHHHHHHHhhCCccccCcchhhh
Confidence 99999999999999998743 1 22211 222 00000 011 2233567888888 999
Q ss_pred cEEEEcHHHHHHHHHhccCCCC------CcccCHHHHHHHHHHHHHHHHHhc
Q 022053 241 EYKYVNREQLKELLRKADAGEE------GLKLSPWFRLVVDNFLFKWWDHLE 286 (303)
Q Consensus 241 ~~~Wvs~eEL~~ll~~~~~~~~------~~~ftPw~~~i~~~~l~~ww~~~~ 286 (303)
+.+|++.+|+++.+... |.. -..|.|.-..|+.+.+..|-...-
T Consensus 286 DaqwF~r~ev~~aL~~k--g~~Rv~~~~a~i~~P~~~aIA~qLI~~~~~~~~ 335 (345)
T KOG3084|consen 286 DAQWFDREEVKSALTTK--GLVRVQIEKALILIPPPFAIAHQLILHWVGFVP 335 (345)
T ss_pred hcccccHHHHHHHHHhc--CCccccccCcceecCChhHHHHHHHHHHHccch
Confidence 99999999999988731 111 134566666666667777765443
No 83
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.12 E-value=1.3e-09 Score=90.25 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=42.2
Q ss_pred EEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 022053 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (303)
Q Consensus 125 vsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~ 192 (303)
+.+++...++ +||.+|... .++|.|.+| ||+++.||+ +.+||+||+.||+|+.+.
T Consensus 7 av~vl~~~~~-~lL~~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 7 VVALLPVDDG-LLVIRRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEEECCC-EEEEEeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 3344444455 555555532 357999998 999999999 899999999999999875
No 84
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.10 E-value=5.3e-10 Score=99.57 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=66.1
Q ss_pred eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc---------eeeeEEE
Q 022053 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE---------FTPLGRI 205 (303)
Q Consensus 135 ~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~---------l~~l~~i 205 (303)
++|+.||+. +|.|.+| ||+++++|+ +.+||+|||.||||+.+..+.... +..-...
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~ 114 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVE 114 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccE
Confidence 578888853 5899998 999999999 899999999999987653332111 1100111
Q ss_pred EEEcCC------CCCCcceEEEEEEEEEec---CcCCC-CccccccEEEEcHHHHHHHHHh
Q 022053 206 LYKAPS------DGKWGEHELDYLLFIVRD---VSVNP-NPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 206 ~y~~~~------~~~~~ehei~~vf~~~~d---~~i~~-~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
.|..+. +++|. +.+.|.|.+... ....+ ..+|..+++|++++++..|..+
T Consensus 115 vy~~~~~dpr~td~~w~-~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~d 174 (186)
T cd03670 115 VYKGYVDDPRNTDNAWM-ETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYAN 174 (186)
T ss_pred EEeccccCCCCCCcceE-EEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccC
Confidence 242221 22354 345555544211 11222 2368999999999998765443
No 85
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.05 E-value=1.8e-09 Score=86.91 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=67.6
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHH-HHHHHHHHHhCCCcccCCCCceee
Q 022053 124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAEDVPVDEFTP 201 (303)
Q Consensus 124 avsv~I~n~~-g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~e-AA~REL~EElGI~~~~~~~~~l~~ 201 (303)
++.+.+.... +++|+++|.... +.|.+| ||+++.+|+ ..+ ||+||++|||||.+... .+..
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~---------~~~~aa~RE~~EEtGl~~~~~---~~~~ 75 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEE---------LPEEAAARELEEETGLRVKDE---RLEL 75 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCc---------hHHHHHHHHHHHHhCCeeeee---ccee
Confidence 4444444433 789999988654 799998 999999999 355 99999999999988631 1233
Q ss_pred eEEEEEEcCCCCCCcceEEEEEEEEEe----cCcCCCC---ccccccEEEEcHHHHHHHHH
Q 022053 202 LGRILYKAPSDGKWGEHELDYLLFIVR----DVSVNPN---PDEVAEYKYVNREQLKELLR 255 (303)
Q Consensus 202 l~~i~y~~~~~~~~~ehei~~vf~~~~----d~~i~~~---~~EV~~~~Wvs~eEL~~ll~ 255 (303)
++.+.+................+.... ...+... ..|...+.|++.+++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 136 (161)
T COG0494 76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL 136 (161)
T ss_pred eeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence 443322221111000011111111111 1111111 35889999999999877544
No 86
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.01 E-value=3.5e-09 Score=88.80 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=39.6
Q ss_pred EEEEEEeCCC--eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 022053 125 FSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191 (303)
Q Consensus 125 vsv~I~n~~g--~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~ 191 (303)
+.++|.+.++ +||+.|+.. +.|.+| ||++++||+ +.+||+||++||||+..
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence 4555555554 566654432 459998 999999999 89999999999999986
No 87
>PLN03143 nudix hydrolase; Provisional
Probab=98.94 E-value=1.4e-08 Score=96.25 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=86.1
Q ss_pred EEcCCCcEEeee--eccccch-hhhhccCCc--ee-EEEEEEEE-eCCCe--EEEEEecCCCCcCCCceecccCccCCCC
Q 022053 93 LVDENDRVVGHE--NKYNCHL-MEKIESLNL--LH-RAFSVFLF-NSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYR 163 (303)
Q Consensus 93 vvDe~d~~iG~~--tr~~~H~-~~~i~~~gl--~H-ravsv~I~-n~~g~--lLLqqRs~~K~~~PG~W~~p~gGhve~g 163 (303)
=||--|+.+|.. ....+.. .++.. .+. .| .+|+|++. +.+|+ ++|.++..... -.-.|++| ||.++.+
T Consensus 94 ~vd~fg~~~gflkv~~d~~~l~~G~~~-~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~P-AG~lD~~ 170 (291)
T PLN03143 94 GVDMFGKRIGFLKFKADIIDKETGQKV-PGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELP-AGMLDDD 170 (291)
T ss_pred EEecccCceeEEEEEEEEEECCCCCEe-eEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEec-ccccCCC
Confidence 477778888863 2221211 11111 122 22 36666655 54555 66665543111 12389998 8999985
Q ss_pred -CChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEE--------EEEEcCCCCCCcceEEEEEEEEEecCc---
Q 022053 164 -ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR--------ILYKAPSDGKWGEHELDYLLFIVRDVS--- 231 (303)
Q Consensus 164 -Es~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~--------i~y~~~~~~~~~ehei~~vf~~~~d~~--- 231 (303)
|+ +++||+|||+||||+.+.. +++..+.. -.|..+ +.. .+..++|++.....
T Consensus 171 ~ed---------p~~aA~REL~EETG~~~~a---~~lv~L~~~~~~~~g~~v~psp---G~~-dE~i~Lfla~~~v~~~~ 234 (291)
T PLN03143 171 KGD---------FVGTAVREVEEETGIKLKL---EDMVDLTAFLDPSTGCRMFPSP---GGC-DEEISLFLYRGHVDKET 234 (291)
T ss_pred CCC---------HHHHHHHHHHHHHCCcccc---ceEEEeeeccccCcCceEEecC---Ccc-CCeEEEEEEccccchhh
Confidence 77 8999999999999998642 23344431 124333 222 35556676653211
Q ss_pred ---------CCCCccccccEEEEcHHHHHHHHHhc
Q 022053 232 ---------VNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 232 ---------i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
-..+.+|..++.|++++|+.+++.++
T Consensus 235 l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 235 IRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred hcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 12355788889999999999998753
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.93 E-value=4.7e-09 Score=95.59 Aligned_cols=113 Identities=20% Similarity=0.169 Sum_probs=78.9
Q ss_pred eEEEEEEEEeC-CC--eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 122 HRAFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 122 Hravsv~I~n~-~g--~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
-.+|.+.+++. +| +|||+||+.+-..++|.-.+| ||..+..+.. -..+|.||.+||+|++.+.+
T Consensus 43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~---- 109 (246)
T KOG3069|consen 43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELV---- 109 (246)
T ss_pred CccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHh----
Confidence 34667777765 34 699999999999999999998 9999998874 57899999999999998643
Q ss_pred eeeeEEEE-EEcCCCCCCcceEEEEEEEEEec---CcCCCCccccccEEEEcHHHHHH
Q 022053 199 FTPLGRIL-YKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKE 252 (303)
Q Consensus 199 l~~l~~i~-y~~~~~~~~~ehei~~vf~~~~d---~~i~~~~~EV~~~~Wvs~eEL~~ 252 (303)
..++... +... .+|.-+-+ +-+.... ....+|++||.++.||+++++..
T Consensus 110 -~~~g~l~~~~~r--~~~~v~p~--v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 110 -DVLGALPPFVLR--SGWSVFPV--VGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred -hhhhhccceeec--cCccccee--EEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence 2222210 1111 23332221 1122222 35678999999999999999864
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.87 E-value=7.2e-08 Score=77.00 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeE
Q 022053 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~ 203 (303)
.+.++++..+|++||+||.. +..++|+|++| ||.++.+|+ .+++..|++.+|+++... .++
T Consensus 4 ~~~~~ii~~~~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~~~ 64 (118)
T cd03431 4 GIAVVVIRNDGRVLLEKRPE-KGLLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRLSLE--------PLG 64 (118)
T ss_pred EEEEEEEecCCeEEEEECCC-CCCCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCcccc--------cce
Confidence 34444445578999999975 45789999999 888888887 688888999999875111 122
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEEecCcCCCCccccccEEEEcHHHHHHH
Q 022053 204 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 204 ~i~y~~~~~~~~~ehei~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.+.+..+. -+-..++|.+...... .+..+++|++++++.++
T Consensus 65 ~~~H~fth-----~~~~~~~~~~~~~~~~----~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 65 TVKHTFTH-----FRLTLHVYLARLEGDL----LAPDEGRWVPLEELDEY 105 (118)
T ss_pred eEEEecCC-----eEEEEEEEEEEEeCCC----cCccccEEccHHHHhhC
Confidence 22222110 0111234444332211 24567899999998764
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.86 E-value=2.5e-08 Score=84.72 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=79.0
Q ss_pred eeEEEEEEEEeCCC---eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCC
Q 022053 121 LHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197 (303)
Q Consensus 121 ~Hravsv~I~n~~g---~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~ 197 (303)
+..+++++.+..++ ++||..-+. .|..|.+| +||++++|+ +.+||+||..||.|+......
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~~-- 71 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLGR-- 71 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCC----CCCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeeec--
Confidence 34445555555444 688876553 25689988 999999999 899999999999999876432
Q ss_pred ceeeeEEEE-EEcCCCCCCcceEEEEEEEEEecCcCCCC-ccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHH
Q 022053 198 EFTPLGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPN-PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 275 (303)
Q Consensus 198 ~l~~l~~i~-y~~~~~~~~~ehei~~vf~~~~d~~i~~~-~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~ 275 (303)
.++.+. +......... ..+.|++........-++ ..|....+|++++|..+... ..|++..+.
T Consensus 72 ---~~~g~~~~~~~~~~~~~-k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~-----------~~~m~~al~ 136 (145)
T KOG2839|consen 72 ---LLGGFEDFLSKKHRTKP-KGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ-----------HKWMKAALE 136 (145)
T ss_pred ---cccchhhccChhhcccc-cceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh-----------hHHHHHHHH
Confidence 122221 2222211111 112222222222222222 24588999999999988765 367787777
Q ss_pred HHHHH
Q 022053 276 NFLFK 280 (303)
Q Consensus 276 ~~l~~ 280 (303)
.|+..
T Consensus 137 e~~~~ 141 (145)
T KOG2839|consen 137 EFLQF 141 (145)
T ss_pred HHHHH
Confidence 77554
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=3.7e-08 Score=92.81 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=110.1
Q ss_pred ccccCCCHHHHHhhhcCe---EEEEc-CCCcEEeeeeccccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcC
Q 022053 73 TTDAGMDAVQRRLMFEDE---CILVD-ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148 (303)
Q Consensus 73 ~~~~~~d~~q~~lm~eE~---~~vvD-e~d~~iG~~tr~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~ 148 (303)
..+-.+-+.|.+|..++. +...- +.+.+.|..=-.+. . .++...--...+++.+|+|.+++||+.|-.......
T Consensus 64 ~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~~Wl~e~-~-~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~ 141 (295)
T KOG0648|consen 64 GIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLTSWLREA-P-STLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKI 141 (295)
T ss_pred ccceechHHHHhHHHHHHhcCcEEecccccceeeeeeeccc-c-ccCCCchhhheeeeeeEecCCceeEEEEecccceee
Confidence 345557778888886432 33333 33444443211110 0 111111222356788999998899998755555567
Q ss_pred CCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEe
Q 022053 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR 228 (303)
Q Consensus 149 PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~ 228 (303)
+|.|-+| +|.+.++|+ ...+|+||++|||||+.+-+. + +.++...+..+..-.-+.+|+|..
T Consensus 142 ~~~wK~p-tG~v~~~e~---------i~~gavrEvkeetgid~ef~e---V-----la~r~~H~~~~~~~ksd~f~~c~L 203 (295)
T KOG0648|consen 142 RGGWKLP-TGRVEEGED---------IWHGAVREVKEETGIDTEFVE---V-----LAFRRAHNATFGLIKSDMFFTCEL 203 (295)
T ss_pred ccccccc-ceEeccccc---------chhhhhhhhHHHhCcchhhhh---H-----HHHHhhhcchhhcccccceeEEEe
Confidence 8999999 789999999 899999999999999765321 1 112222222232112233344432
Q ss_pred ---cCcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHH
Q 022053 229 ---DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 280 (303)
Q Consensus 229 ---d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~~l~~ 280 (303)
...++.+..|+..++|++.+|.......++ ..+.-....||-+.+..
T Consensus 204 ~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~-----~~m~~~~~~Ic~~~~~~ 253 (295)
T KOG0648|consen 204 RPRSLDITKCKREIEAAAWMPIEEYVSQPLVHP-----KGMFRLAAGICLNRLEE 253 (295)
T ss_pred eccccccchhHHHHHHHhcccHHHhhccccccc-----chhhHHHhhhhHHHHhh
Confidence 446778888999999999998877655432 23333445555555443
No 92
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.06 E-value=0.00015 Score=64.90 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=70.2
Q ss_pred EEEEE-EEeCCCe--EEEEE--ecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCc
Q 022053 124 AFSVF-LFNSKYE--LLLQQ--RSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (303)
Q Consensus 124 avsv~-I~n~~g~--lLLqq--Rs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~ 198 (303)
+|+++ +...+|+ ++|++ |... -.-+.++| +|-++.||+ ++.||+|||+||||+.....
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRpP~---Gk~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv~---- 137 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRPPT---GKICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKVD---- 137 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecCCC---CcEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCccceee----
Confidence 34443 3344564 66654 4322 12377888 899999999 89999999999999985421
Q ss_pred eeeeEEEEEEcCCCCCCcceEEEEEE-EEEecC--c----CCCCccccccEEEEcHHHHHHHHHhc
Q 022053 199 FTPLGRILYKAPSDGKWGEHELDYLL-FIVRDV--S----VNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 199 l~~l~~i~y~~~~~~~~~ehei~~vf-~~~~d~--~----i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
......|..| +++...++.+. .+..+. + ..++..|.-++.-+++.+|.+.+.+.
T Consensus 138 --~~s~~~f~DP---Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l 198 (225)
T KOG3041|consen 138 --MVSPTVFLDP---GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL 198 (225)
T ss_pred --eccccEEcCC---CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence 1222235554 33322333222 222211 1 24667899999999999999887764
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.94 E-value=3.6e-05 Score=62.24 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=51.5
Q ss_pred EEEEeCCCeEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEE
Q 022053 127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 206 (303)
Q Consensus 127 v~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~ 206 (303)
+++++.+|++||+||.. +..+.|+|++|. --.+ ++. ..+++.+.+.+..|+.+... ..++.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~-~gll~GLwefP~-~e~~-~~~---------~~~~l~~~~~~~~~~~~~~~-----~~~~~v~ 64 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPE-KGLLAGLWEFPL-IESD-EED---------DEEELEEWLEEQLGLSIRSV-----EPLGTVK 64 (114)
T ss_dssp EEEEETTSEEEEEE--S-SSTTTT-EE--E-EE-S-SS----------CHHHHHHHTCCSSS-EEEE------S-SEEEE
T ss_pred EEEEEeCCEEEEEECCC-CChhhcCcccCE-eCcc-CCC---------CHHHHHHHHHHHcCCChhhh-----eecCcEE
Confidence 56788899999999985 567999999993 3322 333 24555666667788765422 1233332
Q ss_pred EEcCCCCCCcceEE--EEEEEEEecCcCCCCccccccEEEEcHHHHHHH
Q 022053 207 YKAPSDGKWGEHEL--DYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 207 y~~~~~~~~~ehei--~~vf~~~~d~~i~~~~~EV~~~~Wvs~eEL~~l 253 (303)
.... |.. .++|.+........ +-.+++|++.+++.++
T Consensus 65 H~fS-------H~~~~~~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 65 HVFS-------HRRWTIHVYEVEVSADPPA---EPEEGQWVSLEELDQY 103 (114)
T ss_dssp EE-S-------SEEEEEEEEEEEEE-SS-------TTEEEEEGGGGGGS
T ss_pred EEcc-------ceEEEEEEEEEEecCCCCC---CCCCcEEEEHHHHhhC
Confidence 2221 222 23444443322211 3578999999998653
No 94
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.45 E-value=0.0017 Score=56.68 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=82.2
Q ss_pred EEEEEEEeCCCeEEEEEecCC---CCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCcee
Q 022053 124 AFSVFLFNSKYELLLQQRSGT---KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (303)
Q Consensus 124 avsv~I~n~~g~lLLqqRs~~---K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~ 200 (303)
.-.|+|.|. .++|+-.|-.. +. ..|.+.+-+|||+..++-.. .-..=.+-.+.|||.||+++..++.. .+.
T Consensus 63 IpYvvi~~e-devliyeRltgggE~R-LHn~~SlG~GGHmn~~~GA~--s~~evLk~n~~REleEEv~vseqd~q--~~e 136 (203)
T COG4112 63 IPYVVIMDE-DEVLIYERLTGGGEKR-LHNLYSLGIGGHMNEGDGAT--SREEVLKGNLERELEEEVDVSEQDLQ--ELE 136 (203)
T ss_pred ccEEEEecC-CEEEEEEeccCcchhh-hccccccccccccccCCCcc--cHHHHHccchHHHHHHHhCcCHHHhh--hhe
Confidence 345666654 59999988642 33 45788888999999887521 00000233488999999999876532 566
Q ss_pred eeEEEEEEcCCCCCCcceEEEEEEEEEec-CcCCCCccccccEEEEcHHHHHHHHHhccCCCCCcccCHHHHHHHHH
Q 022053 201 PLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 276 (303)
Q Consensus 201 ~l~~i~y~~~~~~~~~ehei~~vf~~~~d-~~i~~~~~EV~~~~Wvs~eEL~~ll~~~~~~~~~~~ftPw~~~i~~~ 276 (303)
++|-+.- +.+..+...+--+|..+.. ..+..-..+.-+++|+.+++|.+.- ..|-.|-+.+++.
T Consensus 137 ~lGlINd---d~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~y---------~~~EtWS~~~~~~ 201 (203)
T COG4112 137 FLGLIND---DTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKFY---------GVMETWSKISAAV 201 (203)
T ss_pred eeeeecC---CCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHHh---------hhhHHHHHHHHHH
Confidence 7776532 2222332333344544432 1233334556789999999998832 2566777776653
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.98 E-value=0.002 Score=54.21 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=55.7
Q ss_pred CceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCC---Cc-ceEEE----
Q 022053 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK---WG-EHELD---- 221 (303)
Q Consensus 150 G~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~---~~-ehei~---- 221 (303)
|-|.+| -|-...||+ +..||+||.-||+||.++- + +..++. |+.+.+.. |+ +-+++
T Consensus 36 GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG-P---~~~lG~--~kQ~GGKvVta~~veae~Dva~~ 99 (161)
T COG4119 36 GAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG-P---RIDLGS--LKQSGGKVVTAFGVEAELDVADA 99 (161)
T ss_pred Cccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC-c---hhhhhh--hccCCCcEEEEEeeeeeeehhhh
Confidence 789998 799999999 7999999999999999863 2 223333 22221100 10 11111
Q ss_pred --EEEEEEe---cCcCCCCccccccEEEEcHHHHHHHHHhc
Q 022053 222 --YLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA 257 (303)
Q Consensus 222 --~vf~~~~---d~~i~~~~~EV~~~~Wvs~eEL~~ll~~~ 257 (303)
..|.... .+.... -.||+..-|+++.|...-+..+
T Consensus 100 rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~g 139 (161)
T COG4119 100 RSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKG 139 (161)
T ss_pred hcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhc
Confidence 1122221 111111 2589999999999998777653
No 96
>PRK10880 adenine DNA glycosylase; Provisional
Probab=95.51 E-value=0.18 Score=49.36 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=25.6
Q ss_pred eeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecc
Q 022053 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155 (303)
Q Consensus 121 ~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p 155 (303)
..+...++++..+|++||+||..+ ..+.|+|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~r~~~-gl~~gl~~fP 262 (350)
T PRK10880 229 PERTGYFLLLQHGDEVWLEQRPPS-GLWGGLFCFP 262 (350)
T ss_pred CeEEEEEEEEEECCEEEEEECCcc-ChhhccccCC
Confidence 445555555556789999999854 4689999999
No 97
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.083 Score=48.45 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=32.5
Q ss_pred eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhC
Q 022053 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188 (303)
Q Consensus 135 ~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElG 188 (303)
+++..||++. |.|.+| ||.+++||- +-...+||+.||.=
T Consensus 140 e~vavkr~d~-----~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAIP-GGMVDPGEK---------VSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCC-----CcccCC-CCcCCchhh---------hhHHHHHHHHHHHH
Confidence 3555677754 789998 999999999 88999999999963
No 98
>PF14443 DBC1: DBC1
Probab=93.07 E-value=0.65 Score=39.08 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=43.4
Q ss_pred EEEEEecCCCCcCCCceecc-cCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCC
Q 022053 136 LLLQQRSGTKVTFPLVWTNT-CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK 214 (303)
Q Consensus 136 lLLqqRs~~K~~~PG~W~~p-~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~ 214 (303)
+|+.+|...--.-.|-|+.. =||.+..+.+. ...+|+|=+++-|||+...- .+..-+-.++|..+...+
T Consensus 10 Flv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~C--t~W~rf~Ei~Y~R~~~~~ 79 (126)
T PF14443_consen 10 FLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNC--TQWYRFAEIHYYRPGSDG 79 (126)
T ss_pred eEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhc--CccceeeEEEEecCCCCC
Confidence 44444443222236888865 26666666554 68999999999999998642 233333456776655433
Q ss_pred C
Q 022053 215 W 215 (303)
Q Consensus 215 ~ 215 (303)
.
T Consensus 80 ~ 80 (126)
T PF14443_consen 80 F 80 (126)
T ss_pred C
Confidence 3
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=92.33 E-value=0.4 Score=43.03 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=42.7
Q ss_pred ccCCceeEEEEEEEEeCCC--eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 022053 116 ESLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191 (303)
Q Consensus 116 ~~~gl~Hravsv~I~n~~g--~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~ 191 (303)
.+.|+.+.+-+|+++...+ .|||-|.... .|.+| ||...+||+ ..+...|.|.+-+|...
T Consensus 38 ~~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~------~fkLP-Gg~l~~gE~---------e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 38 EKEGMRRSVEGVLLVHEHGHPHVLLLQIGNT------FFKLP-GGRLRPGED---------EIEGLKRKLTEKLSPED 99 (188)
T ss_dssp HHHSSEEEEEEEEEEEETTEEEEEEEEETTT------EEE-S-EEE--TT-----------HHHHHHHHHHHHHB-SS
T ss_pred HHhCCceEEEEEEEEecCCCcEEEEEeccCc------cccCC-ccEeCCCCC---------hhHHHHHHHHHHcCCCc
Confidence 3579888888888888776 4777666533 57787 999999999 58999999999999875
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=86.01 E-value=3.6 Score=39.58 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCCCcceEEEEEEEEEe-c------CcCCCCccccccEEEEcH
Q 022053 175 VRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-D------VSVNPNPDEVAEYKYVNR 247 (303)
Q Consensus 175 ~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~~~ehei~~vf~~~~-d------~~i~~~~~EV~~~~Wvs~ 247 (303)
..+-|.||..||.|.+.. .++|+.... |..-- +.-|..+- +|.+.. + +.-.-+.+|.-++.-+++
T Consensus 299 ~~e~a~~e~veecGYdlp---~~~~k~va~--y~sGV-G~SG~~QT--mfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsl 370 (405)
T KOG4432|consen 299 DPEKAARESVEECGYDLP---EDSFKLVAK--YISGV-GQSGDTQT--MFYVEVTDARRSGPGGGEKEEDEDIEVVRLSL 370 (405)
T ss_pred cHHHHHHHHHHHhCCCCC---HHHHhhhhe--eeccc-CCcCCeeE--EEEEEeehhhccCCCCCcccccceeeEEEech
Confidence 578899999999999864 455554433 33211 11122222 233321 1 122344568888999999
Q ss_pred HHHHHHHHhcc
Q 022053 248 EQLKELLRKAD 258 (303)
Q Consensus 248 eEL~~ll~~~~ 258 (303)
++++.+..+++
T Consensus 371 e~a~~~~~q~~ 381 (405)
T KOG4432|consen 371 EDAPSLYRQHN 381 (405)
T ss_pred hhhhHHHhccC
Confidence 99999999864
No 101
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=85.41 E-value=2.5 Score=40.00 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=25.6
Q ss_pred ceeEEEEEEE-EeCCCeEEEEEecCCCCcCCCceecc
Q 022053 120 LLHRAFSVFL-FNSKYELLLQQRSGTKVTFPLVWTNT 155 (303)
Q Consensus 120 l~Hravsv~I-~n~~g~lLLqqRs~~K~~~PG~W~~p 155 (303)
..++.+.+++ .+.+|++||+||... ..+.|+|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p 259 (275)
T TIGR01084 224 PPERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYCFP 259 (275)
T ss_pred CCeEEEEEEEEEeCCCeEEEEeCCCC-chhhccccCC
Confidence 3455555554 456789999999754 4689999999
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=83.16 E-value=5.2 Score=37.52 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=58.9
Q ss_pred EEEEEecCCCCcCCCceecccCccC-CCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEEEEEEcCCCCC
Q 022053 136 LLLQQRSGTKVTFPLVWTNTCCSHP-LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK 214 (303)
Q Consensus 136 lLLqqRs~~K~~~PG~W~~p~gGhv-e~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~i~y~~~~~~~ 214 (303)
+||.+|.-++- +.|-+| -+-. +.+++ ...+|.|.|..=.|=.....-.. =.+++.+.|+.|....
T Consensus 141 yLLV~~k~g~~---s~w~fP-~~~~s~~~~~---------lr~~ae~~Lk~~~ge~~~t~fvg-naP~g~~~~q~pr~~~ 206 (263)
T KOG4548|consen 141 YLLVKRKFGKS---SVWIFP-NRQFSSSEKT---------LRGHAERDLKVLSGENKSTWFVG-NAPFGHTPLQSPREMT 206 (263)
T ss_pred EEEEeeccCcc---ceeeCC-CcccCCccch---------HHHHHHHHHHHHhcchhhhheec-cCccccccccCccccc
Confidence 56666654443 589998 5666 77787 79999999998888654321000 1244544455443221
Q ss_pred CcceEEEEEEEEEecC--cCCCCccccccEEEEcHHHHHHHHHh
Q 022053 215 WGEHELDYLLFIVRDV--SVNPNPDEVAEYKYVNREQLKELLRK 256 (303)
Q Consensus 215 ~~ehei~~vf~~~~d~--~i~~~~~EV~~~~Wvs~eEL~~ll~~ 256 (303)
.-+.--..+|+..... .-.....-+.++.||+.+||.+.+..
T Consensus 207 ~e~~~~sk~ff~k~~lv~~~~~kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 207 TEEPVSSKVFFFKASLVANSNQKNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred ccccccceeEEeeeeeccccchhcccccceEEechHHHhhhcch
Confidence 1100001244443221 00111223567999999999886543
No 103
>PRK13910 DNA glycosylase MutY; Provisional
Probab=73.68 E-value=5 Score=38.29 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=22.4
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceecc
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p 155 (303)
++...+++.+ +|++||+||. +..|.|+|++|
T Consensus 186 ~~~~~~~~~~-~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 186 EERYLGVVIQ-NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred eEEEEEEEEE-CCEEEEEECC--CchhcccccCC
Confidence 3444444444 6799999994 45799999998
No 104
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=67.77 E-value=15 Score=32.76 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred cCCceeEEEEEEEEeCCC--eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 022053 117 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC 190 (303)
Q Consensus 117 ~~gl~Hravsv~I~n~~g--~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~ 190 (303)
+.|....+-+|+|+...+ .+||.|-..+ .+-+| ||...+||++ .+...|-+-|-+|-.
T Consensus 65 k~gmRrsvegvlivheH~lPHvLLLQig~t------f~KLP-GG~L~pGE~e---------~~Gl~r~l~~~Lgr~ 124 (221)
T KOG1689|consen 65 KEGMRRSVEGVLIVHEHNLPHVLLLQIGNT------FFKLP-GGRLRPGEDE---------ADGLKRLLTESLGRS 124 (221)
T ss_pred hhhhhheeeeeEEEeecCCCeEEEEeeCCE------EEecC-CCccCCCcch---------hHHHHHHHHHHhccc
Confidence 356666666777776553 4554443321 34456 9999999994 788999999999943
No 105
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=63.28 E-value=3.4 Score=40.14 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=59.6
Q ss_pred EEEEEEEeCCC-eEEEEEecCCCCcCCCceecccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeee
Q 022053 124 AFSVFLFNSKY-ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (303)
Q Consensus 124 avsv~I~n~~g-~lLLqqRs~~K~~~PG~W~~p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l 202 (303)
+-+..++|+.- ++||.+-- + ..-|.+| -|++...|+ -..||+||+.||+|.+.... +.+-.++
T Consensus 84 v~ga~ild~~~sr~llv~g~--q---a~sw~fp-rgK~~kdes---------d~~caiReV~eetgfD~skq-l~~~e~I 147 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGW--Q---ASSWSFP-RGKISKDES---------DSDCAIREVTEETGFDYSKQ-LQDNEGI 147 (348)
T ss_pred CchHhhhhhhhhhhheeece--e---ccccccc-Cccccccch---------hhhcchhcccchhhcCHHHH-hccccCc
Confidence 34566677643 55554321 1 2348888 688888888 58999999999999998642 1111111
Q ss_pred EEEEEEcCCCCCCcceEEEEEEEEE---ecCcCCCC-ccccccEEEEcHHHHHHH
Q 022053 203 GRILYKAPSDGKWGEHELDYLLFIV---RDVSVNPN-PDEVAEYKYVNREQLKEL 253 (303)
Q Consensus 203 ~~i~y~~~~~~~~~ehei~~vf~~~---~d~~i~~~-~~EV~~~~Wvs~eEL~~l 253 (303)
-+ + ...+...+|+.. .+....+. -.|++.+.|..++++..-
T Consensus 148 e~--------n--I~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t 192 (348)
T KOG2937|consen 148 ET--------N--IRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPT 192 (348)
T ss_pred cc--------c--hhhceeeeeeeccceeeeecchhhhccccceeeeehhhhccc
Confidence 10 0 112233344431 12222111 258889999999999443
No 106
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=58.12 E-value=13 Score=35.87 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred ccCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcccCCCCceeeeEE
Q 022053 155 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204 (303)
Q Consensus 155 p~gGhve~gEs~l~~~~~~g~~eAA~REL~EElGI~~~~~~~~~l~~l~~ 204 (303)
.|||.++..-+ +.+-|..|+.||.|..+. .+++.++..
T Consensus 83 lc~g~idke~s---------~~eia~eev~eecgy~v~---~d~l~hv~~ 120 (405)
T KOG4432|consen 83 LCAGLIDKELS---------PREIASEEVAEECGYRVD---PDDLIHVIT 120 (405)
T ss_pred eeccccccccC---------HHHHhHHHHHHHhCCcCC---hhHceEEEE
Confidence 36777777666 899999999999999876 466665543
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=45.50 E-value=19 Score=24.40 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=11.6
Q ss_pred CccCCCCCChhhhhhhhcHHHHHHHHHHHHh
Q 022053 157 CSHPLYRESELIEENALGVRNAAQRKLLDEL 187 (303)
Q Consensus 157 gGhve~gEs~l~~~~~~g~~eAA~REL~EEl 187 (303)
||-..+|.- +...+.|||.||+
T Consensus 15 ggLasPgPv---------p~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPV---------PSSTALKELIEEL 36 (43)
T ss_dssp --------S----------HHHHHHHHHHHH
T ss_pred cccCCCCCC---------CchHHHHHHHHHH
Confidence 677777777 6788999999996
No 108
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=39.39 E-value=27 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.9
Q ss_pred eEEEEcCCCcEEeeeeccc
Q 022053 90 ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 90 ~~~vvDe~d~~iG~~tr~~ 108 (303)
.++|+|++++++|..++.+
T Consensus 32 ~~~V~d~~~~~~G~is~~d 50 (57)
T PF00571_consen 32 RLPVVDEDGKLVGIISRSD 50 (57)
T ss_dssp EEEEESTTSBEEEEEEHHH
T ss_pred EEEEEecCCEEEEEEEHHH
Confidence 4899999999999998875
No 109
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.12 E-value=20 Score=35.11 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.3
Q ss_pred eEEEEEEEEeCCCeEEEEEecCCCCcCCCceeccc
Q 022053 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTC 156 (303)
Q Consensus 122 Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~ 156 (303)
.+....++.+.+|+++|.||... ..+.|+|++|.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~-gl~~gl~~fP~ 268 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEK-GLLGGLWCFPQ 268 (342)
T ss_pred hheeeEEEEccCcchhhhhCccc-Cceeccccccc
Confidence 55556666778899999999854 46889999983
No 110
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=25.10 E-value=64 Score=30.76 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.1
Q ss_pred HHHhhhcCe---EEEEcCCCcEEeeeecccc
Q 022053 82 QRRLMFEDE---CILVDENDRVVGHENKYNC 109 (303)
Q Consensus 82 q~~lm~eE~---~~vvDe~d~~iG~~tr~~~ 109 (303)
-+|+|+... ++|+|.+|+++|..||-+.
T Consensus 256 Air~M~~~nVGRLlV~ds~gkpvGiITrTDI 286 (294)
T COG2524 256 AIRLMNKNNVGRLLVTDSNGKPVGIITRTDI 286 (294)
T ss_pred HHHHHHhcCcceEEEEccCCcEEEEEehHHH
Confidence 368998764 7899999999999998753
No 111
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=24.66 E-value=62 Score=24.51 Aligned_cols=19 Identities=47% Similarity=0.601 Sum_probs=15.8
Q ss_pred hhcCeEEEEcCCCcEEeee
Q 022053 86 MFEDECILVDENDRVVGHE 104 (303)
Q Consensus 86 m~eE~~~vvDe~d~~iG~~ 104 (303)
|+++.++=+|++|+++|..
T Consensus 28 ~~edi~Idide~GkV~GiE 46 (69)
T COG5428 28 LGEDILIDIDENGKVIGIE 46 (69)
T ss_pred cCCcEEEEecCCCcEEEEE
Confidence 4567888899999999973
No 112
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.89 E-value=89 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.7
Q ss_pred cCeEEEEcCCCcEEeeeeccc
Q 022053 88 EDECILVDENDRVVGHENKYN 108 (303)
Q Consensus 88 eE~~~vvDe~d~~iG~~tr~~ 108 (303)
...++|+|++++++|..++..
T Consensus 92 ~~~~~Vv~~~~~~~Gvit~~d 112 (116)
T cd04643 92 QPFLPVVDDDGIFIGIITRRE 112 (116)
T ss_pred CCceeEEeCCCeEEEEEEHHH
Confidence 334788999999999988764
No 113
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=22.20 E-value=87 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.7
Q ss_pred CeEEEEcCCCcEEeeeeccc
Q 022053 89 DECILVDENDRVVGHENKYN 108 (303)
Q Consensus 89 E~~~vvDe~d~~iG~~tr~~ 108 (303)
..++|+|++|+++|..++..
T Consensus 86 ~~~~vv~~~g~~~Gvit~~~ 105 (109)
T cd04583 86 KYVPVVDEDGKLVGLITRSS 105 (109)
T ss_pred ceeeEECCCCeEEEEEehHH
Confidence 45889999999999988764
No 114
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=22.17 E-value=79 Score=24.18 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.6
Q ss_pred eEEEEcCCCcEEeeeeccc
Q 022053 90 ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 90 ~~~vvDe~d~~iG~~tr~~ 108 (303)
.++|+|++|+++|..++..
T Consensus 92 ~lpVvd~~~~~~Gvi~~~d 110 (114)
T cd04619 92 NIPVVDENARPLGVLNARD 110 (114)
T ss_pred eEEEECCCCcEEEEEEhHh
Confidence 4899999999999998864
No 115
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.99 E-value=82 Score=23.68 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=16.4
Q ss_pred eEEEEcCCCcEEeeeeccc
Q 022053 90 ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 90 ~~~vvDe~d~~iG~~tr~~ 108 (303)
.++|+|++++++|..++..
T Consensus 74 ~lpVv~~~~~~~Giit~~d 92 (96)
T cd04614 74 QIPIINGNDKLIGLLRDHD 92 (96)
T ss_pred eeeEECCCCcEEEEEEHHH
Confidence 4889999899999998864
No 116
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.53 E-value=80 Score=24.34 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=16.6
Q ss_pred eEEEEcCCCcEEeeeeccc
Q 022053 90 ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 90 ~~~vvDe~d~~iG~~tr~~ 108 (303)
.+.|+|++|+++|..++.+
T Consensus 98 ~l~Vvd~~~~~~Givt~~d 116 (120)
T cd04641 98 RLVVVDENKRVEGIISLSD 116 (120)
T ss_pred EEEEECCCCCEEEEEEHHH
Confidence 5889999999999998875
No 117
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.29 E-value=81 Score=24.44 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.6
Q ss_pred eEEEEcCCCcEEeeeeccc
Q 022053 90 ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 90 ~~~vvDe~d~~iG~~tr~~ 108 (303)
.++|+|++++++|..++.+
T Consensus 101 ~lpVvd~~~~~vGiit~~d 119 (123)
T cd04627 101 SVAVVDNQGNLIGNISVTD 119 (123)
T ss_pred eEEEECCCCcEEEEEeHHH
Confidence 4899999999999998765
No 118
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.14 E-value=98 Score=23.41 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHhhhcC---eEEEEcCCCcEEeeeeccc
Q 022053 83 RRLMFED---ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 83 ~~lm~eE---~~~vvDe~d~~iG~~tr~~ 108 (303)
.++|.+. .++|+|++|+++|..++..
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 109 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDD 109 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHH
Confidence 3445433 4889999999999988765
No 119
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=21.12 E-value=1.2e+02 Score=26.44 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=27.7
Q ss_pred cCeEEEEcCCCcEEeeeec-cccchhhhhccCCceeEEEEEEEEeCCCeEEEEEecCCCCcCCCceecccCc
Q 022053 88 EDECILVDENDRVVGHENK-YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158 (303)
Q Consensus 88 eE~~~vvDe~d~~iG~~tr-~~~H~~~~i~~~gl~Hravsv~I~n~~g~lLLqqRs~~K~~~PG~W~~p~gG 158 (303)
.+.+.|+|++|+++-.+.. +.. . ++. ...|.|.+|+.|+.-|. ....+...|..--+|
T Consensus 27 ~~~f~V~D~~G~~vf~V~g~~~~---------s-~~~--~~~l~D~~G~~L~~i~~-k~~~l~~~w~i~~~~ 85 (187)
T PF04525_consen 27 GDDFTVYDENGNVVFRVDGGKFF---------S-IGK--KRTLMDASGNPLFTIRR-KLFSLRPTWEIYRGG 85 (187)
T ss_dssp ---EEEEETTS-EEEEEE--SCT---------T-BTT--EEEEE-TTS-EEEEEE---------EEEEEETT
T ss_pred CCCEEEEcCCCCEEEEEEEeccc---------C-CCC--EEEEECCCCCEEEEEEe-eecccceEEEEEECC
Confidence 4579999999999988644 211 0 111 35668888886665444 234456788765443
No 120
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.97 E-value=84 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.6
Q ss_pred eEEEEcCCCcEEeeeeccc
Q 022053 90 ECILVDENDRVVGHENKYN 108 (303)
Q Consensus 90 ~~~vvDe~d~~iG~~tr~~ 108 (303)
.++|+|.+++++|..++.+
T Consensus 89 ~lpVvd~~~~~~Giit~~d 107 (111)
T cd04603 89 VVAVVDKEGKLVGTIYERE 107 (111)
T ss_pred eEEEEcCCCeEEEEEEhHH
Confidence 4789999999999998875
Done!