BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022056
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
K + G LP T+V+++W QH PYPTED+K ++ +T L L Q+NNWFIN R+R
Sbjct: 8 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
K+R G LP ++ +L++W +H YP+E++K L E+T L L QI+NWFIN R+R
Sbjct: 8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
+G P T++ + W QH PYP+E+ K +L ++TGL + Q+NNWFIN R+R
Sbjct: 2 SGIFPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
LP ++ +L++W +H YP+E +KA L ++T L Q+ NWFIN R+R
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
RKRR T +L ++ H PYP+E+ K +L +++G+ + Q++NWF N+R R
Sbjct: 4 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIR 59
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
RKRR T +L ++ H PYP+E+ K +L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
RKRR T +L ++ H PYP+E+ K +L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 17/73 (23%)
Query: 228 RKRRAGKLP-----GDTTS---------VLKNWWQQHSKWPYPTEDDKAKLVEETGLQLK 273
R RR LP G+ TS VL+ W+ + PYP+ +K +L E TGL
Sbjct: 480 RVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHN---PYPSPREKRELAEATGLTTT 536
Query: 274 QINNWFINQRKRN 286
Q++NWF N+R+R+
Sbjct: 537 QVSNWFKNRRQRD 549
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
RKRR + +L ++ H PYP+E+ K +L + G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIR 58
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 240 TSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
T +L ++ H PYP+E+ K +L ++ G+ + Q++NWF N+R R
Sbjct: 15 TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 169 HMDFSLDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
H + Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 122 HTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 167
>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 169 HMDFSLDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
H + Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 123 HTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 168
>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 169 HMDFSLDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
H + Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 124 HTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169
>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 169 HMDFSLDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
H + Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 124 HTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169
>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase Complexed With A Carboxylated Thiazole
Phosphate
Length = 235
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 169 HMDFSLDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
H + Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 132 HTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 177
>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
pdb|1G69|B Chain B, Thiamin Phosphate Synthase
Length = 228
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 169 HMDFSLDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
H + Q+ D D +G GP+ PTET++ SL+E VR++
Sbjct: 125 HTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 170
>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase K159a
Length = 235
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 174 LDQSASDSHDLMGFGPLLPTETER--------SLMERVRQE 206
+ Q+ D D +G GP+ PTET + SL+E VR++
Sbjct: 137 VKQAEEDGADYVGLGPIYPTETAKDTRAVQGVSLIEAVRRQ 177
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 31.2 bits (69), Expect = 0.71, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
R + + +L++W+ ++ + PY L++ T L QI NW N+R++
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 59
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
R + + +L++W+ ++ + PY L++ T L QI NW N+R++
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 235 LPGDTTSVLKNWWQQHS--KWPYPTEDDKAKLVEETGLQLKQINN 277
+P DT + W H KWP P D A+ +++ GL K + +
Sbjct: 374 IPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTS 418
>pdb|4HJ1|A Chain A, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|B Chain B, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|C Chain C, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|D Chain D, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
Length = 432
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 48 QLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSY-----GSLQQANNNNNHSLSPHER 102
+L+AH SCLR I P+ID QL + +++ + GSL Q N+ + S R
Sbjct: 252 SVLSAHESCLRAPNLISYKPMID-QLECTTNLIDPFVVFERGSLPQTRNDKTFAASKGNR 310
>pdb|4HJC|A Chain A, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (non- Glycosylated)
Length = 428
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 48 QLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSY-----GSLQQANNNNNHSLSPHER 102
+L+AH SCLR I P+ID QL + +++ + GSL Q N+ + S R
Sbjct: 249 SVLSAHESCLRAPNLISYKPMID-QLECTTNLIDPFVVFERGSLPQTRNDKTFAASKGNR 307
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 251 SKWPYPTEDDKAKLVEETGLQLKQINNWFINQR------KRNWHSNSQSVTS 296
++WP P E DK L +E+GL I +WF + R W+ QS S
Sbjct: 47 TQWPSPEEYDK--LAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANS 96
>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
pdb|2DX7|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
Length = 228
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 190 LLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQ 249
++P T + +E +R+ +KI + + + V+E L ++AG L T V + ++
Sbjct: 79 IMPANTAHAFVEDIRKAIKIPIISMIEETAKKVKE--LGFKKAGLLATTGTIVSGVYEKE 136
Query: 250 HSKWPY----PTEDD 260
SK+ PTED+
Sbjct: 137 FSKYGVEIMTPTEDE 151
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
R + + +L++W+ ++ + PY L++ T L QI NW N+R++
Sbjct: 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 255 YPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
+P + + +L+E TGL +I WF + R R
Sbjct: 28 FPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58
>pdb|1LE8|B Chain B, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 83
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
R + + +L++W+ ++ + PY L++ T L QI NW +R +
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 200 MERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLK 244
M R R E+ +EL++ K E++L++R P D TS L+
Sbjct: 27 MRRRRIEVNVELRKAKKD------EQMLKRRNVSSFPDDATSPLQ 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,071,245
Number of Sequences: 62578
Number of extensions: 312200
Number of successful extensions: 1367
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 40
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)