Query 022056
Match_columns 303
No_of_seqs 236 out of 1136
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 3E-19 1E-23 138.5 6.3 63 228-290 7-69 (83)
2 1x2n_A Homeobox protein pknox1 99.8 1.3E-18 4.3E-23 131.3 7.1 66 228-293 7-72 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 1.3E-18 4.3E-23 130.0 6.4 61 232-292 2-62 (67)
4 1du6_A PBX1, homeobox protein 99.7 4.6E-18 1.6E-22 125.0 7.5 62 228-289 3-64 (64)
5 2lk2_A Homeobox protein TGIF1; 99.7 1.3E-18 4.5E-23 137.3 4.5 57 233-289 10-66 (89)
6 1puf_B PRE-B-cell leukemia tra 99.7 9.7E-18 3.3E-22 126.4 7.2 65 229-293 2-66 (73)
7 1k61_A Mating-type protein alp 99.7 1.3E-17 4.4E-22 121.1 6.9 59 231-289 1-59 (60)
8 1le8_B Mating-type protein alp 99.7 1.8E-17 6.2E-22 128.3 7.6 63 229-291 3-65 (83)
9 1b72_B Protein (PBX1); homeodo 99.7 2.1E-17 7.1E-22 128.4 6.4 64 229-292 2-65 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.7 3.3E-17 1.1E-21 127.6 7.0 60 228-287 27-86 (87)
11 2ecc_A Homeobox and leucine zi 99.6 4.9E-16 1.7E-20 119.3 6.6 60 230-292 5-64 (76)
12 1akh_A Protein (mating-type pr 99.6 6E-16 2.1E-20 112.5 6.0 57 228-287 5-61 (61)
13 2cra_A Homeobox protein HOX-B1 99.6 1.8E-15 6E-20 113.2 7.2 63 228-293 7-69 (70)
14 2dmu_A Homeobox protein goosec 99.6 1.5E-15 5.2E-20 113.5 6.8 63 228-293 7-69 (70)
15 2e1o_A Homeobox protein PRH; D 99.6 1.5E-15 5.2E-20 113.5 6.4 63 228-293 7-69 (70)
16 2djn_A Homeobox protein DLX-5; 99.6 1.5E-15 5.1E-20 113.6 6.2 63 228-293 7-69 (70)
17 2da3_A Alpha-fetoprotein enhan 99.6 2.5E-15 8.7E-20 114.6 7.5 63 228-293 17-79 (80)
18 2hdd_A Protein (engrailed home 99.6 2.2E-15 7.4E-20 109.7 6.4 60 227-289 2-61 (61)
19 1bw5_A ISL-1HD, insulin gene e 99.6 3.2E-15 1.1E-19 110.4 7.0 60 228-290 3-62 (66)
20 2da2_A Alpha-fetoprotein enhan 99.6 3.3E-15 1.1E-19 111.5 7.1 63 228-293 7-69 (70)
21 2da4_A Hypothetical protein DK 99.6 9.7E-16 3.3E-20 117.4 4.0 66 228-293 8-74 (80)
22 2dmt_A Homeobox protein BARH-l 99.6 4.5E-15 1.5E-19 113.8 7.3 63 228-293 17-79 (80)
23 2da1_A Alpha-fetoprotein enhan 99.6 3.7E-15 1.3E-19 111.2 6.0 62 228-292 7-68 (70)
24 1ig7_A Homeotic protein MSX-1; 99.6 4.9E-15 1.7E-19 106.6 6.1 57 229-288 1-57 (58)
25 1jgg_A Segmentation protein EV 99.5 6.2E-15 2.1E-19 107.0 6.2 57 229-288 2-58 (60)
26 2h1k_A IPF-1, pancreatic and d 99.5 6.3E-15 2.2E-19 108.0 6.2 59 228-289 3-61 (63)
27 2vi6_A Homeobox protein nanog; 99.5 9.4E-15 3.2E-19 106.7 6.6 59 228-289 3-61 (62)
28 2k40_A Homeobox expressed in E 99.5 9.3E-15 3.2E-19 108.3 6.3 61 229-292 2-62 (67)
29 1ahd_P Antennapedia protein mu 99.5 7.3E-15 2.5E-19 109.4 5.5 63 228-293 2-64 (68)
30 3rkq_A Homeobox protein NKX-2. 99.5 9E-15 3.1E-19 104.6 5.7 57 228-287 2-58 (58)
31 2l7z_A Homeobox protein HOX-A1 99.5 1.8E-14 6E-19 108.8 7.0 63 228-293 7-69 (73)
32 1fjl_A Paired protein; DNA-bin 99.5 1.2E-14 4.1E-19 111.5 6.0 60 227-289 17-76 (81)
33 2dmq_A LIM/homeobox protein LH 99.5 1.2E-14 4.1E-19 111.1 5.9 59 228-289 7-65 (80)
34 1ftt_A TTF-1 HD, thyroid trans 99.5 1.7E-14 5.8E-19 107.4 6.3 62 228-292 2-63 (68)
35 2dms_A Homeobox protein OTX2; 99.5 2.7E-14 9.3E-19 109.3 6.5 62 228-292 7-68 (80)
36 1yz8_P Pituitary homeobox 2; D 99.5 7.2E-15 2.5E-19 109.3 3.1 63 228-293 3-65 (68)
37 2dn0_A Zinc fingers and homeob 99.5 3.4E-14 1.2E-18 107.9 6.9 61 230-293 10-70 (76)
38 1wh5_A ZF-HD homeobox family p 99.5 2.4E-14 8.2E-19 110.4 6.0 62 228-289 17-79 (80)
39 1nk2_P Homeobox protein VND; h 99.5 2.5E-14 8.5E-19 108.9 6.0 59 228-289 9-67 (77)
40 1zq3_P PRD-4, homeotic bicoid 99.5 2E-14 6.8E-19 107.0 5.2 59 228-289 2-60 (68)
41 3a02_A Homeobox protein arista 99.5 3.2E-14 1.1E-18 103.2 6.1 55 232-289 3-57 (60)
42 2cue_A Paired box protein PAX6 99.5 2.5E-14 8.5E-19 109.7 5.2 59 228-289 7-65 (80)
43 2kt0_A Nanog, homeobox protein 99.5 4.8E-14 1.6E-18 108.7 6.5 60 228-290 22-81 (84)
44 1b8i_A Ultrabithorax, protein 99.5 5.8E-14 2E-18 108.0 6.5 60 228-290 20-79 (81)
45 1puf_A HOX-1.7, homeobox prote 99.5 5.3E-14 1.8E-18 107.1 6.2 59 228-289 13-71 (77)
46 2ly9_A Zinc fingers and homeob 99.5 9E-14 3.1E-18 104.7 7.4 64 229-295 7-70 (74)
47 3a03_A T-cell leukemia homeobo 99.5 5.2E-14 1.8E-18 100.9 5.6 53 233-288 2-54 (56)
48 2m0c_A Homeobox protein arista 99.5 8.3E-14 2.9E-18 104.8 6.9 62 228-292 9-70 (75)
49 1uhs_A HOP, homeodomain only p 99.5 6E-14 2.1E-18 105.4 5.8 58 230-290 3-61 (72)
50 2da5_A Zinc fingers and homeob 99.5 9.2E-14 3.2E-18 105.4 6.8 61 230-293 9-69 (75)
51 2hi3_A Homeodomain-only protei 99.4 8.2E-14 2.8E-18 105.0 6.0 59 229-290 3-62 (73)
52 2d5v_A Hepatocyte nuclear fact 99.4 8.9E-14 3E-18 119.8 6.8 62 227-291 96-157 (164)
53 3a01_A Homeodomain-containing 99.4 6.6E-14 2.2E-18 110.5 5.4 61 228-291 17-77 (93)
54 3nau_A Zinc fingers and homeob 99.4 8.1E-14 2.8E-18 104.1 5.3 52 235-289 11-62 (66)
55 1wi3_A DNA-binding protein SAT 99.4 2.5E-13 8.5E-18 102.1 7.6 63 228-293 7-70 (71)
56 2cuf_A FLJ21616 protein; homeo 99.4 9.3E-14 3.2E-18 109.8 5.3 61 228-291 7-82 (95)
57 2r5y_A Homeotic protein sex co 99.4 1.2E-13 4.2E-18 107.6 5.8 60 227-289 27-86 (88)
58 3d1n_I POU domain, class 6, tr 99.4 1.5E-13 5.2E-18 117.1 6.5 58 228-288 93-150 (151)
59 2ecb_A Zinc fingers and homeob 99.4 2.4E-13 8.1E-18 107.2 6.4 54 233-289 16-69 (89)
60 3nar_A ZHX1, zinc fingers and 99.4 3E-13 1E-17 107.2 6.9 60 228-290 25-84 (96)
61 1b72_A Protein (homeobox prote 99.4 1.6E-13 5.6E-18 108.8 5.4 61 227-290 33-93 (97)
62 2cqx_A LAG1 longevity assuranc 99.4 3E-13 1E-17 102.2 6.5 61 230-293 10-71 (72)
63 2dmp_A Zinc fingers and homeob 99.4 4.2E-13 1.4E-17 105.2 7.0 58 233-293 18-75 (89)
64 2e19_A Transcription factor 8; 99.4 4.7E-13 1.6E-17 99.0 6.6 57 232-291 7-63 (64)
65 1wh7_A ZF-HD homeobox family p 99.4 2.1E-13 7.1E-18 105.2 4.9 61 228-289 17-79 (80)
66 1e3o_C Octamer-binding transcr 99.4 6E-13 2.1E-17 114.6 6.9 60 227-289 100-159 (160)
67 1au7_A Protein PIT-1, GHF-1; c 99.4 8.2E-13 2.8E-17 112.3 6.9 60 227-289 86-145 (146)
68 2xsd_C POU domain, class 3, tr 99.4 7E-13 2.4E-17 114.9 6.5 65 226-293 97-161 (164)
69 1x2m_A LAG1 longevity assuranc 99.4 1.2E-12 4E-17 97.3 6.6 56 236-293 8-63 (64)
70 2l9r_A Homeobox protein NKX-3. 99.3 2E-12 6.9E-17 97.2 6.7 55 235-292 11-65 (69)
71 1lfb_A Liver transcription fac 99.3 1.4E-12 4.6E-17 104.6 5.7 65 225-292 6-91 (99)
72 2da6_A Hepatocyte nuclear fact 99.3 2.3E-12 7.8E-17 103.9 5.3 59 228-289 6-85 (102)
73 3l1p_A POU domain, class 5, tr 99.3 1.7E-12 5.9E-17 111.3 4.0 60 227-289 95-154 (155)
74 2h8r_A Hepatocyte nuclear fact 99.1 5.1E-11 1.7E-15 107.8 5.7 56 228-286 142-218 (221)
75 1mh3_A Maltose binding-A1 home 99.1 4.8E-11 1.6E-15 113.0 5.6 55 230-287 367-421 (421)
76 1ic8_A Hepatocyte nuclear fact 99.1 3.4E-11 1.2E-15 107.2 3.8 59 227-288 114-193 (194)
77 2da7_A Zinc finger homeobox pr 99.0 3.1E-10 1.1E-14 85.6 6.7 48 237-287 14-61 (71)
78 2nzz_A Penetratin conjugated G 96.7 0.00016 5.6E-09 47.8 -0.8 17 273-289 1-17 (37)
79 2ys9_A Homeobox and leucine zi 96.6 0.0021 7.2E-08 48.2 4.1 45 235-282 13-57 (70)
80 2glo_A Brinker CG9653-PA; prot 79.0 2.4 8.2E-05 29.2 4.1 47 232-282 3-49 (59)
81 1hlv_A CENP-B, major centromer 79.0 3.8 0.00013 32.1 5.9 49 231-285 4-52 (131)
82 1tc3_C Protein (TC3 transposas 72.5 3.3 0.00011 26.0 3.2 43 233-283 4-46 (51)
83 2elh_A CG11849-PA, LD40883P; s 72.0 4.4 0.00015 30.1 4.3 46 230-283 18-63 (87)
84 2o8x_A Probable RNA polymerase 68.3 3.5 0.00012 28.4 2.8 49 233-289 14-62 (70)
85 3hug_A RNA polymerase sigma fa 68.2 2.9 9.9E-05 31.1 2.5 47 235-289 38-84 (92)
86 1ku3_A Sigma factor SIGA; heli 61.9 5.6 0.00019 28.2 2.9 53 233-289 9-62 (73)
87 2p7v_B Sigma-70, RNA polymeras 60.2 7 0.00024 27.2 3.1 54 234-291 5-58 (68)
88 2rnj_A Response regulator prot 59.8 18 0.0006 26.7 5.5 49 234-291 29-77 (91)
89 3mzy_A RNA polymerase sigma-H 57.9 5.3 0.00018 31.4 2.4 46 235-289 110-155 (164)
90 1tty_A Sigma-A, RNA polymerase 57.0 8.1 0.00028 28.5 3.1 53 234-290 18-70 (87)
91 1jko_C HIN recombinase, DNA-in 56.8 7.4 0.00025 24.7 2.6 42 233-282 4-45 (52)
92 1s7o_A Hypothetical UPF0122 pr 52.0 9.4 0.00032 30.1 2.9 47 235-289 23-69 (113)
93 1iuf_A Centromere ABP1 protein 51.3 16 0.00056 29.6 4.4 50 229-284 6-62 (144)
94 3c57_A Two component transcrip 51.0 24 0.00082 26.4 5.0 51 234-293 27-77 (95)
95 1u78_A TC3 transposase, transp 50.0 22 0.00077 27.4 4.9 51 232-289 58-111 (141)
96 3swk_A Vimentin; cytoskeleton, 49.0 64 0.0022 24.3 7.1 48 102-149 20-76 (86)
97 2k27_A Paired box protein PAX- 48.9 60 0.002 26.0 7.5 60 232-294 81-147 (159)
98 1or7_A Sigma-24, RNA polymeras 48.9 8.7 0.0003 31.3 2.4 47 235-289 141-187 (194)
99 1rp3_A RNA polymerase sigma fa 47.6 9.7 0.00033 32.0 2.5 47 234-288 187-233 (239)
100 2q1z_A RPOE, ECF SIGE; ECF sig 45.9 6 0.0002 32.2 0.9 46 235-288 136-181 (184)
101 2jqq_A Conserved oligomeric go 45.7 32 0.0011 30.3 5.5 38 111-150 83-120 (204)
102 3bd1_A CRO protein; transcript 45.4 14 0.00046 26.3 2.7 23 261-283 14-36 (79)
103 2rn7_A IS629 ORFA; helix, all 44.3 44 0.0015 25.0 5.7 51 233-284 5-56 (108)
104 2xi8_A Putative transcription 44.1 12 0.00041 24.9 2.1 23 261-283 17-39 (66)
105 2jpc_A SSRB; DNA binding prote 43.9 21 0.00071 23.8 3.3 29 262-290 17-45 (61)
106 2r1j_L Repressor protein C2; p 43.8 12 0.00042 25.0 2.1 23 261-283 21-43 (68)
107 2jn6_A Protein CGL2762, transp 43.6 18 0.00061 26.8 3.2 46 233-284 4-49 (97)
108 2lqh_B Forkhead box O3, FOXO3A 49.3 5 0.00017 27.2 0.0 12 11-22 25-36 (52)
109 1zug_A Phage 434 CRO protein; 43.0 12 0.00043 25.3 2.1 24 261-284 19-42 (71)
110 3lsg_A Two-component response 41.4 42 0.0014 24.8 5.1 41 239-282 3-43 (103)
111 1x3u_A Transcriptional regulat 41.4 23 0.00079 24.8 3.4 48 235-291 17-64 (79)
112 1xsv_A Hypothetical UPF0122 pr 41.3 13 0.00044 29.1 2.1 47 235-289 26-72 (113)
113 1adr_A P22 C2 repressor; trans 39.1 16 0.00054 25.1 2.1 23 261-283 21-43 (76)
114 3bs3_A Putative DNA-binding pr 38.9 16 0.00056 25.1 2.2 23 261-283 26-48 (76)
115 1je8_A Nitrate/nitrite respons 38.4 28 0.00096 25.2 3.5 48 234-290 21-68 (82)
116 1p4w_A RCSB; solution structur 38.0 42 0.0014 25.6 4.6 51 231-290 31-81 (99)
117 1r69_A Repressor protein CI; g 37.8 17 0.00058 24.4 2.1 23 261-283 17-39 (69)
118 2b5a_A C.BCLI; helix-turn-heli 37.7 17 0.00059 25.0 2.2 23 261-283 26-48 (77)
119 2wiu_B HTH-type transcriptiona 37.3 24 0.00081 25.0 2.9 23 261-283 28-50 (88)
120 3b7h_A Prophage LP1 protein 11 36.1 19 0.00063 24.9 2.1 23 261-283 23-45 (78)
121 1xc0_A Pardaxin P-4, PA4; BEND 35.9 19 0.00065 22.3 1.8 23 36-58 5-27 (33)
122 1fse_A GERE; helix-turn-helix 35.7 33 0.0011 23.5 3.4 50 232-290 9-58 (74)
123 3t72_q RNA polymerase sigma fa 35.3 27 0.00092 26.9 3.1 52 235-290 20-71 (99)
124 3omt_A Uncharacterized protein 35.1 18 0.00062 25.0 1.9 22 261-282 24-45 (73)
125 1y7y_A C.AHDI; helix-turn-heli 34.9 20 0.0007 24.3 2.2 22 261-282 29-50 (74)
126 2a6c_A Helix-turn-helix motif; 34.5 22 0.00076 25.4 2.4 22 262-283 35-56 (83)
127 3kz3_A Repressor protein CI; f 33.7 19 0.00065 25.5 1.9 22 262-283 29-50 (80)
128 3kz3_A Repressor protein CI; f 32.8 62 0.0021 22.6 4.6 40 239-281 38-77 (80)
129 2ict_A Antitoxin HIGA; helix-t 31.5 26 0.00091 25.4 2.4 39 238-283 8-46 (94)
130 1l0o_C Sigma factor; bergerat 31.0 10 0.00035 31.7 0.0 45 235-287 199-243 (243)
131 1rzs_A Antirepressor, regulato 30.9 24 0.00082 24.3 1.9 19 261-279 13-31 (61)
132 2kpj_A SOS-response transcript 30.8 25 0.00086 25.7 2.2 22 262-283 26-47 (94)
133 1b72_A Protein (homeobox prote 30.7 8.6 0.00029 29.3 -0.5 25 268-292 3-27 (97)
134 3ol1_A Vimentin; structural ge 30.5 1.6E+02 0.0054 23.3 7.1 48 102-149 40-96 (119)
135 2k9q_A Uncharacterized protein 30.3 24 0.00083 24.6 1.9 23 261-283 18-40 (77)
136 2ef8_A C.ECOT38IS, putative tr 30.1 27 0.00093 24.4 2.2 22 262-283 27-48 (84)
137 1neq_A DNA-binding protein NER 29.5 25 0.00086 25.4 1.9 20 262-281 26-45 (74)
138 1pdn_C Protein (PRD paired); p 29.2 64 0.0022 23.9 4.4 47 232-281 73-126 (128)
139 1u78_A TC3 transposase, transp 29.1 50 0.0017 25.3 3.8 43 233-283 5-47 (141)
140 3clo_A Transcriptional regulat 28.6 48 0.0016 28.9 4.0 50 233-291 196-245 (258)
141 2x48_A CAG38821; archeal virus 28.1 32 0.0011 22.5 2.2 21 261-281 34-54 (55)
142 2lfw_A PHYR sigma-like domain; 27.5 15 0.00052 29.6 0.4 49 233-289 92-140 (157)
143 3f6w_A XRE-family like protein 27.2 30 0.001 24.3 2.0 22 262-283 31-52 (83)
144 1lmb_3 Protein (lambda repress 26.9 32 0.0011 24.6 2.1 22 261-282 33-54 (92)
145 2v79_A DNA replication protein 26.1 29 0.00098 28.2 1.9 48 235-285 30-78 (135)
146 3mkl_A HTH-type transcriptiona 25.9 49 0.0017 25.2 3.2 42 235-280 4-45 (120)
147 1pdn_C Protein (PRD paired); p 25.8 65 0.0022 23.9 3.8 43 234-284 17-59 (128)
148 1x57_A Endothelial differentia 25.7 37 0.0013 24.4 2.3 22 262-283 30-51 (91)
149 3t76_A VANU, transcriptional r 25.7 34 0.0012 25.5 2.1 22 261-282 40-61 (88)
150 2l49_A C protein; P2 bacteriop 25.7 35 0.0012 24.8 2.1 23 261-283 20-42 (99)
151 1hlv_A CENP-B, major centromer 25.3 1E+02 0.0035 23.5 5.0 58 228-286 66-130 (131)
152 2hin_A GP39, repressor protein 25.1 47 0.0016 24.1 2.7 21 261-281 13-33 (71)
153 2w9j_A Signal recognition part 24.7 39 0.0013 26.0 2.3 24 100-123 62-85 (91)
154 2ewt_A BLDD, putative DNA-bind 24.4 41 0.0014 22.6 2.2 22 262-283 25-48 (71)
155 3s8q_A R-M controller protein; 24.3 36 0.0012 23.8 2.0 21 262-282 28-48 (82)
156 1e8o_B SRP14, signal recogniti 23.5 39 0.0013 26.6 2.2 20 100-119 70-89 (106)
157 2ofy_A Putative XRE-family tra 23.3 38 0.0013 23.9 2.0 22 262-283 31-52 (86)
158 4dhi_B Ubiquitin thioesterase 23.0 2.7E+02 0.0091 25.6 8.0 86 16-125 14-110 (284)
159 3qq6_A HTH-type transcriptiona 22.9 43 0.0015 23.7 2.1 20 262-281 27-46 (78)
160 3oou_A LIN2118 protein; protei 22.7 58 0.002 24.3 3.0 40 239-282 6-45 (108)
161 4ah2_B HLA class II histocompa 22.6 18 0.00062 31.8 0.0 15 8-22 15-29 (229)
162 2d5u_A N-glycanase 1; pngase, 22.1 1.1E+02 0.0039 24.6 4.7 19 11-29 2-20 (124)
163 2pij_A Prophage PFL 6 CRO; tra 21.9 51 0.0018 22.1 2.3 22 261-282 16-37 (67)
164 2q0o_A Probable transcriptiona 21.0 80 0.0027 27.0 3.9 50 232-290 173-222 (236)
165 3mn2_A Probable ARAC family tr 20.2 73 0.0025 23.6 3.1 40 239-282 3-42 (108)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=138.54 Aligned_cols=63 Identities=41% Similarity=0.781 Sum_probs=59.9
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
+||+++.|+++++.+|+.||..|..||||+..+|..||..|||+..||.|||+|+|+|.|++.
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 577889999999999999999999999999999999999999999999999999999999863
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-18 Score=131.29 Aligned_cols=66 Identities=45% Similarity=0.817 Sum_probs=61.6
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+++++.|++.++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|.|.|++....
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 467788999999999999999998999999999999999999999999999999999999886543
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-18 Score=129.97 Aligned_cols=61 Identities=39% Similarity=0.798 Sum_probs=53.9
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
.|+||++++.+|+.||..|..+|||+..+|..||..|||+..||.|||+|+|+|.|++...
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999987543
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=4.6e-18 Score=124.96 Aligned_cols=62 Identities=27% Similarity=0.574 Sum_probs=58.3
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+++++.|+.++..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35777899999999999999999999999999999999999999999999999999998874
No 5
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=137.26 Aligned_cols=57 Identities=37% Similarity=0.692 Sum_probs=54.8
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.-||++++++|++||.+|..+|||++++|..||.+|||+.+||+|||+|+|+|.|++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 458999999999999999999999999999999999999999999999999999986
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=9.7e-18 Score=126.40 Aligned_cols=65 Identities=28% Similarity=0.584 Sum_probs=60.9
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
||+++.|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 67788999999999999999998999999999999999999999999999999999999876654
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=121.08 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=55.5
Q ss_pred cCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 231 kr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
|++.|+++++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 35779999999999999998888999999999999999999999999999999998864
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.70 E-value=1.8e-17 Score=128.30 Aligned_cols=63 Identities=21% Similarity=0.441 Sum_probs=57.3
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
++++..|+.+++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|.|.|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 445566999999999999999999999999999999999999999999999999999998754
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=2.1e-17 Score=128.42 Aligned_cols=64 Identities=28% Similarity=0.608 Sum_probs=59.1
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
||+|+.|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999999899999999999999999999999999999999999986543
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.69 E-value=3.3e-17 Score=127.63 Aligned_cols=60 Identities=23% Similarity=0.531 Sum_probs=56.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 287 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k 287 (303)
++++++.|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456778899999999999999998899999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=4.9e-16 Score=119.26 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=55.3
Q ss_pred ccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 230 RRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
.++++|+++++.+|+.||..| |||+..++..||..|||+..||.+||+|+|.|.|+.+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~---~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC---QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 456779999999999999988 899999999999999999999999999999999886543
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=6e-16 Score=112.45 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=47.9
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 287 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k 287 (303)
++|+++.|+.++..+|+.||..| |||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46677889999999999999988 9999999999999999999999999999999864
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.8e-15 Score=113.19 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=58.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+|+++.|+.++..+|+.+|..+ |||+..++..||..+||++.||.+||+|+|.|.|+..+.+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAAN---KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCC
Confidence 46778899999999999999988 8999999999999999999999999999999999987654
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=113.45 Aligned_cols=63 Identities=22% Similarity=0.446 Sum_probs=58.8
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+|+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQET---KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 46778899999999999999987 8999999999999999999999999999999999887754
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.5e-15 Score=113.54 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=58.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.++++..|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQ---KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 46778899999999999999987 8999999999999999999999999999999999887765
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=113.60 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=58.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ss 69 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKT---QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSS 69 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCC
Confidence 46778899999999999999877 8999999999999999999999999999999999988765
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=114.60 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=58.8
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
+||+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..++.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLD---SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 46778899999999999999988 8999999999999999999999999999999999987654
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.58 E-value=2.2e-15 Score=109.74 Aligned_cols=60 Identities=30% Similarity=0.435 Sum_probs=52.7
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+||+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 357788999999999999999988 899999999999999999999999999999998863
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.57 E-value=3.2e-15 Score=110.42 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=56.5
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
+||+++.|+.++..+|+.||..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAAN---PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 46788999999999999999987 8999999999999999999999999999999998764
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=111.46 Aligned_cols=63 Identities=22% Similarity=0.445 Sum_probs=58.4
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
++|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDAN---AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 46778899999999999999988 8999999999999999999999999999999999876654
No 21
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.7e-16 Score=117.44 Aligned_cols=66 Identities=11% Similarity=0.259 Sum_probs=59.3
Q ss_pred hhccCCCCCcchHHHHHHHHHHc-CCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQH-SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h-~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
++|+|+.|+.+++.+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCCC
Confidence 46778889999999999999987 5669999999999999999999999999999999998864443
No 22
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=113.81 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=58.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+|+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQ---KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 46677889999999999999988 8999999999999999999999999999999999987764
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=111.19 Aligned_cols=62 Identities=24% Similarity=0.498 Sum_probs=57.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
.+|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDIN---NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHC---SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 46778899999999999999988 899999999999999999999999999999999987654
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=4.9e-15 Score=106.55 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=53.6
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccc
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 288 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk 288 (303)
+|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK---QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4677889999999999999988 89999999999999999999999999999999875
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.54 E-value=6.2e-15 Score=106.96 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=53.3
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccc
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 288 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk 288 (303)
+|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE---NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 4677889999999999999988 89999999999999999999999999999999875
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.54 E-value=6.3e-15 Score=108.01 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=54.3
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
++|+++.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN---KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 56788899999999999999988 899999999999999999999999999999998864
No 27
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.54 E-value=9.4e-15 Score=106.67 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=51.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
++|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQ---KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 46778899999999999999988 899999999999999999999999999999998863
No 28
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.53 E-value=9.3e-15 Score=108.26 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=56.5
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
||+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN---CYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5778899999999999999876 999999999999999999999999999999999987554
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.53 E-value=7.3e-15 Score=109.45 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=58.2
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
+||+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN---RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC---SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC---CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 57788999999999999999988 8999999999999999999999999999999999876443
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.53 E-value=9e-15 Score=104.64 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=53.1
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 287 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k 287 (303)
++|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ---RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46778899999999999999866 8999999999999999999999999999999864
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.52 E-value=1.8e-14 Score=108.77 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=57.9
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATN---KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHT---SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhC---CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 46778899999999999999988 8999999999999999999999999999999999875443
No 32
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.52 E-value=1.2e-14 Score=111.54 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=55.7
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.++|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERT---QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 356778889999999999999987 899999999999999999999999999999998864
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=111.06 Aligned_cols=59 Identities=22% Similarity=0.412 Sum_probs=55.9
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
+||+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAIN---HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 57788999999999999999988 899999999999999999999999999999999875
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.51 E-value=1.7e-14 Score=107.36 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=57.4
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
++|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ---KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 56788899999999999999988 899999999999999999999999999999999886543
No 35
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2.7e-14 Score=109.31 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=57.1
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
.+|+|+.|+.++..+|+.+|..+ |||+..++..||..+||++.||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAKT---RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 46778899999999999999988 899999999999999999999999999999999886443
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.49 E-value=7.2e-15 Score=109.27 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=57.5
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
++|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRN---RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTC---SSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 46788899999999999999877 8999999999999999999999999999999998765443
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=107.87 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=55.8
Q ss_pred ccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 230 RRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
+.|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRN---QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHS---SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCccCCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 346789999999999999988 8999999999999999999999999999999999875543
No 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.49 E-value=2.4e-14 Score=110.36 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=56.3
Q ss_pred hhccCCCCCcchHHHHHHHHHH-cCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQ-HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
+||+|+.|+.+++..|+.+|.. ++++|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5778899999999999999997 3455999999999999999999999999999999998753
No 39
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.49 E-value=2.5e-14 Score=108.89 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=55.0
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
++|+++.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQ---RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 46677889999999999999988 899999999999999999999999999999998864
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.49 E-value=2e-14 Score=106.95 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=55.3
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+|+++.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG---RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 46778899999999999999877 899999999999999999999999999999999875
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.49 E-value=3.2e-14 Score=103.15 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=49.6
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
|..|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRT---HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 5679999999999999987 899999999999999999999999999999998874
No 42
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=2.5e-14 Score=109.66 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=55.3
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+|+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERT---HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 46778899999999999999877 899999999999999999999999999999998875
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=4.8e-14 Score=108.65 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=55.9
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
++|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQRQ---KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHS---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999988 8999999999999999999999999999999988753
No 44
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.47 E-value=5.8e-14 Score=108.04 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=53.3
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
++|+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTN---HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 56778899999999999999988 8999999999999999999999999999999988753
No 45
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.47 E-value=5.3e-14 Score=107.06 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=55.1
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+|+++.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFN---MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 46677889999999999999988 899999999999999999999999999999998864
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.47 E-value=9e-14 Score=104.68 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=58.1
Q ss_pred hccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCCCc
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVT 295 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~~~ 295 (303)
++.|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.......
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~ 70 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKN---QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCL 70 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCCT
T ss_pred CCCCcCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCCC
Confidence 5667889999999999999987 899999999999999999999999999999999987655443
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=100.89 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=49.1
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccc
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 288 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk 288 (303)
+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ---KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc---CCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 358999999999999988 89999999999999999999999999999999876
No 48
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.46 E-value=8.3e-14 Score=104.77 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=57.0
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
++|.++.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQKT---HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 46677889999999999999988 899999999999999999999999999999999987554
No 49
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=6e-14 Score=105.36 Aligned_cols=58 Identities=19% Similarity=0.333 Sum_probs=53.6
Q ss_pred ccCCCCCcchHHHHHHHHHH-cCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 230 RRAGKLPGDTTSVLKNWWQQ-HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
++++.|+.++..+|+.+|.. + |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVN---KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccC---CCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 46678999999999999985 6 8999999999999999999999999999999988864
No 50
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.2e-14 Score=105.41 Aligned_cols=61 Identities=20% Similarity=0.438 Sum_probs=55.1
Q ss_pred ccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 230 RRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
+|+.+|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN---PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 345669999999999999988 8999999999999999999999999999999998875443
No 51
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=8.2e-14 Score=104.97 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=54.4
Q ss_pred hccCCCCCcchHHHHHHHHHH-cCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 229 KRRAGKLPGDTTSVLKNWWQQ-HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
+++++.|+.++..+|+.+|.. + |||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~---~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN---KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999995 7 8999999999999999999999999999999988764
No 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.44 E-value=8.9e-14 Score=119.77 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=54.4
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
..||+|+.|+..++.+|+.||..| |||+..++..||..+||+..||.+||+|+|+|.|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 457788999999999999999998 89999999999999999999999999999999998644
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.44 E-value=6.6e-14 Score=110.55 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=56.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
+||+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQ---KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 56778899999999999999988 89999999999999999999999999999999988643
No 54
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.44 E-value=8.1e-14 Score=104.10 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=48.9
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
-+++++..|+..|..+ |||+..++..||..|||+..||.+||+|+|.+.|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~---~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS---QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGG---GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999 899999999999999999999999999999998764
No 55
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=2.5e-13 Score=102.09 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=58.9
Q ss_pred hhccCCCCCcchHHHHHHHHHH-cCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQ-HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
+||.|+.|+.+|..+|+..|.. + |||+.+.++.||.+|||++.+|..||||+|--.+.+.+++
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~~~---~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHDVG---LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 6788899999999999999999 7 8999999999999999999999999999999988877654
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=9.3e-14 Score=109.81 Aligned_cols=61 Identities=16% Similarity=0.403 Sum_probs=56.5
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC---------------CChHHHhhhhHhhhhhccccCC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETG---------------LQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg---------------Ls~kQI~nWF~N~R~R~kk~~~ 291 (303)
++|.|..|+..++.+|+.||..+ |||+..++..||..+| |+..||.+||+|+|.|.|+...
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~~---~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNEN---QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 46778889999999999999997 8999999999999999 9999999999999999988643
No 57
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.43 E-value=1.2e-13 Score=107.59 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=53.3
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
..+|+|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFN---RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 356778899999999999999877 899999999999999999999999999999998875
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=117.10 Aligned_cols=58 Identities=17% Similarity=0.469 Sum_probs=54.7
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 288 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk 288 (303)
+||+|+.|+..++.+|+.||..+ |||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEKN---PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 46677889999999999999987 89999999999999999999999999999999886
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=2.4e-13 Score=107.16 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=50.5
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
..++.+++.+|+.+|..+ |||+..++..||..|||+..||.+||+|+|.|.++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNS---SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 369999999999999988 899999999999999999999999999999887664
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=107.18 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=54.8
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
.+|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRT---QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34677889999999999999987 8999999999999999999999999999999999865
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.6e-13 Score=108.76 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=53.7
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
..+++|+.|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFN---KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 356778899999999999999877 8999999999999999999999999999999988753
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=3e-13 Score=102.21 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=54.5
Q ss_pred ccCCCCCcchHHHHHHHH-HHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 230 RRAGKLPGDTTSVLKNWW-QQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf-~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
++++.++.++..+|+..| ..+ +||+..++..||..+||++.||.+||+|+|.+.|+..++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~---~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVT---KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 345568899999999999 766 8999999999999999999999999999999999877654
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.2e-13 Score=105.20 Aligned_cols=58 Identities=21% Similarity=0.388 Sum_probs=52.9
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.+++.+++.+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 18 k~~t~~Ql~~Le~~F~~~---~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS---SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCHHHHHHHHHHHccC---CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 448999999999999988 8999999999999999999999999999999988765443
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.7e-13 Score=99.01 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=51.4
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
..++.++++.+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++-.+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~~ 63 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN---AQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCccHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCCC
Confidence 4557789999999999876 89999999999999999999999999999999887544
No 65
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.39 E-value=2.1e-13 Score=105.25 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=54.4
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCC--CCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSK--WPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~--~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
+||+|+.|+.+++..|+ -|..+.. +|||+..++..||..+||++.||.+||+|+|.+.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 57788999999999999 6887322 5999999999999999999999999999999998764
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.37 E-value=6e-13 Score=114.59 Aligned_cols=60 Identities=18% Similarity=0.401 Sum_probs=53.9
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+||+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMEN---QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 357788899999999999999988 899999999999999999999999999999999875
No 67
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=8.2e-13 Score=112.32 Aligned_cols=60 Identities=20% Similarity=0.456 Sum_probs=54.1
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+||+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEH---SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 356778899999999999999988 899999999999999999999999999999998863
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.35 E-value=7e-13 Score=114.91 Aligned_cols=65 Identities=14% Similarity=0.344 Sum_probs=52.1
Q ss_pred HHhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 226 ILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 226 ~~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
..+||+|+.|+..++.+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKC---PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred ccCCCCceeccHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 3457788899999999999999988 8999999999999999999999999999999999876543
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=1.2e-12 Score=97.31 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=49.4
Q ss_pred CcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 236 PGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 236 pk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
...+..+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.+.|+..|++
T Consensus 8 ~~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~ 63 (64)
T 1x2m_A 8 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSS 63 (64)
T ss_dssp SSCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCC
T ss_pred CchHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCC
Confidence 345789999999542 27999999999999999999999999999999999888875
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=97.19 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCC
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
++..+...|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 11 ~t~~ql~~LE~~F~~~---~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQ---KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 5678899999999988 899999999999999999999999999999998876544
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.32 E-value=1.4e-12 Score=104.61 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=52.8
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHH------------------hC---CChHHHhhhhHhhh
Q 022056 225 EILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEE------------------TG---LQLKQINNWFINQR 283 (303)
Q Consensus 225 e~~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~------------------tg---Ls~kQI~nWF~N~R 283 (303)
..+++|.|..|+..+..+|+.+|..+ |||+..+|..||.. +| |+..||.+||+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~---~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 34467778899999999999999987 89999999999999 88 99999999999999
Q ss_pred hhccccCCC
Q 022056 284 KRNWHSNSQ 292 (303)
Q Consensus 284 ~R~kk~~~~ 292 (303)
.+.++....
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 998876443
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=103.93 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=54.9
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHh---------------------CCChHHHhhhhHhhhhhc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEET---------------------GLQLKQINNWFINQRKRN 286 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~t---------------------gLs~kQI~nWF~N~R~R~ 286 (303)
+||.|..|++.++.+|+.+|..+ |||+..+|+.||..+ +|+..+|.|||+|+|++.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~---~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQ---KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 56778889999999999999988 899999999999999 799999999999999998
Q ss_pred ccc
Q 022056 287 WHS 289 (303)
Q Consensus 287 kk~ 289 (303)
++.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.27 E-value=1.7e-12 Score=111.27 Aligned_cols=60 Identities=22% Similarity=0.440 Sum_probs=54.9
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
.+||+|+.|+..+...|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKS---PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccC---CCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 356778889999999999999866 899999999999999999999999999999998874
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.11 E-value=5.1e-11 Score=107.85 Aligned_cols=56 Identities=25% Similarity=0.480 Sum_probs=52.2
Q ss_pred hhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhHhhhhhc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETG---------------------LQLKQINNWFINQRKRN 286 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg---------------------Ls~kQI~nWF~N~R~R~ 286 (303)
+||.|..|++.++.+|+.||..| |||+..+|+.||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~---~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQ---KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 56777889999999999999987 8999999999999998 89999999999999875
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.11 E-value=4.8e-11 Score=113.05 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=50.7
Q ss_pred ccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc
Q 022056 230 RRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 287 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k 287 (303)
+-+..|...++..|+.+|..| |||+..+|..||.+|||+++||++||+|+|+|.|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~---~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 344569999999999999888 8999999999999999999999999999999975
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.10 E-value=3.4e-11 Score=107.17 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=52.7
Q ss_pred HhhccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhHhhhhh
Q 022056 227 LRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETG---------------------LQLKQINNWFINQRKR 285 (303)
Q Consensus 227 ~kkrkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg---------------------Ls~kQI~nWF~N~R~R 285 (303)
++||.|..|++.++.+|+.+|..+ |||+..+|..||..++ |+..||.|||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~---~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHH---CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 356778899999999999999998 8999999999999999 9999999999999999
Q ss_pred ccc
Q 022056 286 NWH 288 (303)
Q Consensus 286 ~kk 288 (303)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 763
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.1e-10 Score=85.58 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc
Q 022056 237 GDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 287 (303)
Q Consensus 237 k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k 287 (303)
++++.+|+.+|..| |+|+.+++..||..+||+.+.|+.||+|+|.+..
T Consensus 14 k~ql~~Lk~yF~~n---~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAMN---MEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 67899999999999 8999999999999999999999999999998644
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.73 E-value=0.00016 Score=47.84 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=15.4
Q ss_pred HHHhhhhHhhhhhcccc
Q 022056 273 KQINNWFINQRKRNWHS 289 (303)
Q Consensus 273 kQI~nWF~N~R~R~kk~ 289 (303)
.||.+||+|+|.|.|+.
T Consensus 1 rQVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CCTTTTTTCSHHHHTSS
T ss_pred CCceeccHHHHHHHHHH
Confidence 48999999999998886
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.56 E-value=0.0021 Score=48.17 Aligned_cols=45 Identities=24% Similarity=0.509 Sum_probs=40.7
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~ 282 (303)
.++..+++|+++|..|. ...+++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~hk---~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQ---QLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTC---CCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhc---ccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 45667899999999995 8999999999999999999999999753
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=79.04 E-value=2.4 Score=29.20 Aligned_cols=47 Identities=6% Similarity=0.163 Sum_probs=32.4
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~ 282 (303)
+.+++.+.+......+... ++.......+|...|++..+|.+|....
T Consensus 3 r~~ys~efK~~~~~~~~~g----~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND----NDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC----TTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHcC----CCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4568888876665555443 2212225689999999999999996543
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.98 E-value=3.8 Score=32.06 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=38.5
Q ss_pred cCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhh
Q 022056 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285 (303)
Q Consensus 231 kr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R 285 (303)
++..|+.+.+..+..++..+ +.++. ..+|+..|++...|.+|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~---g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN---PDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC---TTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC---CCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 45679999988887877665 55553 368999999999999999887654
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.53 E-value=3.3 Score=25.99 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=30.1
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhh
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..|+.+.+..+...+... + ....+|+.+|++...|.+|+...+
T Consensus 4 ~~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 457777765555555433 2 255799999999999999986443
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=71.98 E-value=4.4 Score=30.08 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=32.5
Q ss_pred ccCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhh
Q 022056 230 RRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 230 rkr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R 283 (303)
+++.+++.+.+......+... + ....+|+.+|++...|.+|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g----~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG----E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT----C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC----C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345678888865555555433 1 245889999999999999986544
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=68.32 E-value=3.5 Score=28.45 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=39.2
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
..||...+.+|.-.|... ++ -..+|+..|++...|.+|....|++.++-
T Consensus 14 ~~L~~~~r~il~l~~~~g----~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----LS----YADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----CC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred HhCCHHHHHHHHHHHHcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 348999999998766544 22 34799999999999999999999998864
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.24 E-value=2.9 Score=31.15 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=39.0
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
||...+.+|.-.|...+ .-..+|+.+|++...|.++....|++.++.
T Consensus 38 L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 88899999987666552 245799999999999999999999998753
No 86
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.88 E-value=5.6 Score=28.18 Aligned_cols=53 Identities=15% Similarity=0.010 Sum_probs=39.1
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc-cc
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW-HS 289 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k-k~ 289 (303)
..||...+.+|.-.|.-....++ .-.++|+.+|++...|.+|....+++.+ ..
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~ 62 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHE 62 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhH
Confidence 34888899999777641100112 2248999999999999999999999988 54
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.24 E-value=7 Score=27.24 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
.||...+.+|.-.|.-+....+ .-.++|+.+|++...|.++....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4888888998776621000112 23579999999999999999999999987643
No 88
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=59.82 E-value=18 Score=26.68 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=39.0
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
.||...+++|.-+ ... +.. .++|+.+|++...|.++..+.|++.+..+.
T Consensus 29 ~Lt~~e~~vl~l~-~~g----~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AKG----YSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HTT----CCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-HcC----CCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4899999999764 333 222 378999999999999999999999887654
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=57.87 E-value=5.3 Score=31.41 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=37.5
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
||...+.++. .|... | .-..+|+.+|++...|.++....|++.++.
T Consensus 110 L~~~~r~v~~-~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRG----Y----SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp SCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 8888999998 55444 3 235799999999999999999999998753
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=56.97 E-value=8.1 Score=28.47 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
.||...+.+|.-.|.-.....+ .-..+|..+|++...|.++....+++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3888899999777641100012 2347899999999999999999999998754
No 91
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=56.76 E-value=7.4 Score=24.70 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~ 282 (303)
.+++.+....+...+... - ....+|+.+|++...|..|+...
T Consensus 4 ~~~~~~~~~~i~~l~~~g-----~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKG-----H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp CSSCTTHHHHHHHHHHTT-----C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHcC-----C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 357776666555555432 1 24579999999999999998643
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=52.00 E-value=9.4 Score=30.06 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=39.0
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
||+..+.++.-.|.... + -..+|+.+|++...|.+|....|++.++.
T Consensus 23 L~~~~r~vl~l~y~~g~----s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY----S----LAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTCC----C----HHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC----C----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 89999999988766552 2 35799999999999999999999988753
No 93
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=51.25 E-value=16 Score=29.55 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=38.4
Q ss_pred hccCCCCCcchHHHHHHHH-HHcCCCCCCCHHHHHHHHH----Hh--CCChHHHhhhhHhhhh
Q 022056 229 KRRAGKLPGDTTSVLKNWW-QQHSKWPYPTEDDKAKLVE----ET--GLQLKQINNWFINQRK 284 (303)
Q Consensus 229 krkr~~lpk~~~~~L~~wf-~~h~~~PYPs~~ek~~LA~----~t--gLs~kQI~nWF~N~R~ 284 (303)
+++|..|+-+++..+..|+ ..| |-.+.. .||+ +. +++..+|+.|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~---~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ---NRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS---SCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC---CCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5677889999999999998 556 555543 4555 77 8899999999987544
No 94
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.99 E-value=24 Score=26.37 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCCCC
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQS 293 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~~~ 293 (303)
.||...+++|.-. ... +. -.++|+.+|++...|.++..+.+++.+..+...
T Consensus 27 ~Lt~~e~~vl~l~-~~g----~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 77 (95)
T 3c57_A 27 GLTDQERTLLGLL-SEG----LT----NKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp CCCHHHHHHHHHH-HTT----CC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cCCHHHHHHHHHH-HcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 4888899999875 333 22 258999999999999999999999998876544
No 95
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.04 E-value=22 Score=27.38 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=30.6
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC--CChHHHhhhhHhhhh-hcccc
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETG--LQLKQINNWFINQRK-RNWHS 289 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg--Ls~kQI~nWF~N~R~-R~kk~ 289 (303)
..+++.+....+..+ ..+ |.-+. ..|+...| ++...|.+|+..... +.+++
T Consensus 58 ~~~l~~~~~~~i~~~-~~~---~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~ 111 (141)
T 1u78_A 58 RKALSVRDERNVIRA-ASN---SCKTA---RDIRNELQLSASKRTILNVIKRSGVIVRQKL 111 (141)
T ss_dssp CCSSCHHHHHHHHHH-HHH---CCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-------
T ss_pred CCcCCHHHHHHHHHH-HhC---CCCCH---HHHHHHHCCCccHHHHHHHHHHCCCceeeec
Confidence 345777776666665 444 44444 35777778 799999999976654 44444
No 96
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=48.98 E-value=64 Score=24.30 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhh---------HhhcHHHHHHhHHHHHHHHHHhh
Q 022056 102 RQELDNFLAQYLIVLCTFKEQLQQH---------VRVHAVEAVMGCREIENTLQALT 149 (303)
Q Consensus 102 dpELDqFMeaYc~vL~kykeEL~kp---------~~~~~~EA~~f~~~ie~qL~~l~ 149 (303)
.-|+|+.-.+--+...||.+|+..- +++-.++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777788888887652 34556788888888999998885
No 97
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=48.92 E-value=60 Score=25.96 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=38.2
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHH-HHHHh------CCChHHHhhhhHhhhhhccccCCCCC
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAK-LVEET------GLQLKQINNWFINQRKRNWHSNSQSV 294 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~-LA~~t------gLs~kQI~nWF~N~R~R~kk~~~~~~ 294 (303)
+.+++.+....+..++.++ |.-+..+... |.... .++..+|.+|+...+..-.+.-...+
T Consensus 81 ~~~~~~~~~~~I~~~~~~~---~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~ 147 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN---PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSG 147 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC---SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHC---ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCC
Confidence 3467777888888888776 4445444332 32221 48999999999877766555433333
No 98
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.89 E-value=8.7 Score=31.35 Aligned_cols=47 Identities=9% Similarity=0.047 Sum_probs=38.7
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
||...+.+|.-.|... ++ -.++|+.+|++...|.++....|++.++.
T Consensus 141 L~~~~r~vl~l~~~~g----~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG----LS----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 8888889987766555 22 24799999999999999999999998864
No 99
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=47.57 E-value=9.7 Score=31.95 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccc
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 288 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk 288 (303)
.||...+.+|.-.|... ++ -.++|+.+|++...|.++....|++.++
T Consensus 187 ~L~~~~r~vl~l~~~~g----~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE----LP----AKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC----CC----HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 38999999998877554 22 3479999999999999999999999875
No 100
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.93 E-value=6 Score=32.16 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 288 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk 288 (303)
||...+.+|.-.|.... +|. ++|+.+|++...|.++....|++.++
T Consensus 136 L~~~~r~vl~l~~~~g~--s~~------eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL--THR------ELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC--SSC------CSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--CHH------HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 89999999988776663 332 68999999999999999999999875
No 101
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=45.66 E-value=32 Score=30.25 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhHhhcHHHHHHhHHHHHHHHHHhhC
Q 022056 111 QYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTG 150 (303)
Q Consensus 111 aYc~vL~kykeEL~kp~~~~~~EA~~f~~~ie~qL~~l~~ 150 (303)
.|-.-|-....-|..|. -..|.+.+++++-..|+.+|+
T Consensus 83 ~YLkkLD~l~~~Lq~h~--~Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHS--QLTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHTCSSSS--HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhC
Confidence 45555656666666664 246999999999999999997
No 102
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=45.42 E-value=14 Score=26.26 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 45899999999999999998754
No 103
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=44.26 E-value=44 Score=25.01 Aligned_cols=51 Identities=6% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCH-HHHHHHHHHhCCChHHHhhhhHhhhh
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTE-DDKAKLVEETGLQLKQINNWFINQRK 284 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~-~ek~~LA~~tgLs~kQI~nWF~N~R~ 284 (303)
.+++.+.+......+..+. .-|++. .....+|..+|+++.+|.+|..-.+.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4588888755544443320 013443 35678999999999999999765443
No 104
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=44.11 E-value=12 Score=24.88 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|++|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 105
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.94 E-value=21 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 262 AKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
.++|...|++...|.++..+.+++....+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999988654
No 106
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=43.80 E-value=12 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|+++..|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45799999999999999998743
No 107
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=43.56 E-value=18 Score=26.80 Aligned_cols=46 Identities=9% Similarity=0.247 Sum_probs=31.3
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhh
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRK 284 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~ 284 (303)
.+++.+.+......+.... ......+|+.+|++..+|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~------g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD------GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG------GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcC------CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 4588887765555543220 012568999999999999999865543
No 108
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=49.31 E-value=5 Score=27.23 Aligned_cols=12 Identities=58% Similarity=1.218 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCC
Q 022056 11 SSSSGGGGGGGD 22 (303)
Q Consensus 11 ~~~~~~~~~~~~ 22 (303)
||+||||.++|+
T Consensus 25 gggsgggsgggs 36 (52)
T 2lqh_B 25 GGGSGGGSGGGS 36 (52)
Confidence 555566555554
No 109
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=42.95 E-value=12 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhHhhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQRK 284 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R~ 284 (303)
...||+.+|++...|++|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999987543
No 110
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.43 E-value=42 Score=24.77 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 022056 239 TTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 239 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~ 282 (303)
..+.+.+|...|+..|-++ -..||+.+|+++..++..|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4566778888886554455 4468888899999888888653
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.40 E-value=23 Score=24.78 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=36.8
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
||...+++|.-+ ... ++ -.++|..+|++...|.+++.+.+++.+..+.
T Consensus 17 L~~~e~~vl~l~-~~g----~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 17 LSERERQVLSAV-VAG----LP----NKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HCHHHHHHHHHH-TTT----CC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHH-HcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 666777888663 322 22 2479999999999999999999999987653
No 112
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.33 E-value=13 Score=29.12 Aligned_cols=47 Identities=4% Similarity=0.052 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
||...+.++.-.|.... + -..+|+.+|++...|.+++...|++.++.
T Consensus 26 L~~~~r~vl~l~~~~g~----s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY----S----LSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCHHHHHHHHHHHTSCC----C----HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC----C----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 89999999987766552 2 35799999999999999999999988754
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.08 E-value=16 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987743
No 114
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=38.93 E-value=16 Score=25.08 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|+++..|++|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998754
No 115
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.44 E-value=28 Score=25.23 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
.|+...+++|.-+ ... + .-.++|+.+|++...|.++..+.+++.+..+
T Consensus 21 ~Lt~~e~~vl~l~-~~g----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLI-AQG----L----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHH-TTT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHH-HcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3778888888764 322 2 3457999999999999999999999988754
No 116
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=37.97 E-value=42 Score=25.61 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=39.9
Q ss_pred cCCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 231 RAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 231 kr~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
....||...+++|.-+ .+.. . -.++|+.+|++...|.++..+.+++..-.+
T Consensus 31 ~~~~Lt~re~~Vl~l~-~~G~----s----~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLF-AEGF----L----VTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSSCCHHHHHHHHHH-HHTC----C----HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred ccCCCCHHHHHHHHHH-HcCC----C----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 3466999999999664 4442 2 268999999999999999999999877554
No 117
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=37.76 E-value=17 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|++|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987754
No 118
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=37.74 E-value=17 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|+.|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 34799999999999999997753
No 119
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=37.28 E-value=24 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|++|..+.+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34799999999999999998744
No 120
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.14 E-value=19 Score=24.91 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 121
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=35.85 E-value=19 Score=22.31 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=17.9
Q ss_pred HHHHHHhCCChHHHHHHHHhhhc
Q 022056 36 IKAEIASHPLYEQLLAAHVSCLR 58 (303)
Q Consensus 36 iKa~I~sHPlYp~Ll~A~i~C~K 58 (303)
+-.+|++.|||.-||.|--..+.
T Consensus 5 lipkiissplfktllsavgsals 27 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSALS 27 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHTT
T ss_pred hhhHHHccHHHHHHHHHHHHHhh
Confidence 34689999999999988655443
No 122
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.69 E-value=33 Score=23.48 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=38.7
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
...|+...+.+|.-+ ... + .-.++|+.+|++...|.+++.+.+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~-~~g----~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQD----K----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHH-HcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 355888888888764 322 3 2357999999999999999999998887654
No 123
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.34 E-value=27 Score=26.87 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=39.8
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
||...+.++.-.|..+...+ -.-..+|..+|++...|.+....++++.++..
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~----~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTD----YTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 88889999977765321112 23457999999999999999999999988753
No 124
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.14 E-value=18 Score=24.97 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHhhhhHhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~ 282 (303)
...||+.+|++...|..|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3479999999999999999875
No 125
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.86 E-value=20 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhHhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~ 282 (303)
...||+.+|++...|++|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3479999999999999998775
No 126
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.47 E-value=22 Score=25.44 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.7
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|++|..+++
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998765
No 127
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.74 E-value=19 Score=25.47 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|++|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 4799999999999999997754
No 128
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=32.80 E-value=62 Score=22.60 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHh
Q 022056 239 TTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFIN 281 (303)
Q Consensus 239 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N 281 (303)
....+..|..-. -.|+...-..||..+|++...+.-|+..
T Consensus 38 s~~~is~~e~g~---~~~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 38 GQSAVAALFNGI---NALNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp CHHHHHHHHTTS---SCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred CHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 345566665443 2488999999999999999999998764
No 129
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=31.51 E-value=26 Score=25.42 Aligned_cols=39 Identities=0% Similarity=0.064 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhh
Q 022056 238 DTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 238 ~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R 283 (303)
.....|+.+...+. -| ...||+.+|++...|++|..+.+
T Consensus 8 ~~g~~l~~~r~~~g----lt---q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 8 RPGDIIQESLDELN----VS---LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp CHHHHHHHHHHHHT----CC---HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred ChhHHHHHHHHHcC----CC---HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34455555555442 22 45799999999999999998753
No 130
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=30.97 E-value=10 Score=31.70 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcc
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 287 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~k 287 (303)
||...+.+|.-.|... -.-.++|+.+|++...|.+++...|++.|
T Consensus 199 L~~~~r~vl~l~~~~g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 199 LDERERLIVYLRYYKD--------QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhcC--------CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 7888888887765544 23357999999999999999999888764
No 131
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.92 E-value=24 Score=24.29 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChHHHhhhh
Q 022056 261 KAKLVEETGLQLKQINNWF 279 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF 279 (303)
...||+.+|+++.-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3579999999999999998
No 132
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.75 E-value=25 Score=25.68 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=19.0
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|+.|..+.+
T Consensus 26 ~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHhCCC
Confidence 4699999999999999997753
No 133
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=30.71 E-value=8.6 Score=29.29 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=8.3
Q ss_pred hCCChHHHhhhhHhhhhhccccCCC
Q 022056 268 TGLQLKQINNWFINQRKRNWHSNSQ 292 (303)
Q Consensus 268 tgLs~kQI~nWF~N~R~R~kk~~~~ 292 (303)
.+.+..+|-.||.+.|...+.....
T Consensus 3 ~~~~~~~~~~W~~~~r~~~~~~~~~ 27 (97)
T 1b72_A 3 PNTPTARTFDWMKVKRNPPKTAKVS 27 (97)
T ss_dssp -----CCCCGGGGC-----------
T ss_pred CCCCCcccccccccccCCCCCCCCC
Confidence 4677788899999999876654433
No 134
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.50 E-value=1.6e+02 Score=23.27 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhh---------HhhcHHHHHHhHHHHHHHHHHhh
Q 022056 102 RQELDNFLAQYLIVLCTFKEQLQQH---------VRVHAVEAVMGCREIENTLQALT 149 (303)
Q Consensus 102 dpELDqFMeaYc~vL~kykeEL~kp---------~~~~~~EA~~f~~~ie~qL~~l~ 149 (303)
.-|+|..-.+.=+...||.+|+... +++..++|...--.+|.++.+|.
T Consensus 40 ~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666665442 24445666666667777777775
No 135
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.29 E-value=24 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|+.|..+.+
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999987753
No 136
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=30.09 E-value=27 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.3
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 5799999999999999998754
No 137
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=29.52 E-value=25 Score=25.40 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=17.4
Q ss_pred HHHHHHhCCChHHHhhhhHh
Q 022056 262 AKLVEETGLQLKQINNWFIN 281 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N 281 (303)
..||+.+|++...|.+|..+
T Consensus 26 ~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 46999999999999999653
No 138
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=29.23 E-value=64 Score=23.92 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=28.7
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCC-------ChHHHhhhhHh
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGL-------QLKQINNWFIN 281 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgL-------s~kQI~nWF~N 281 (303)
..+++.+....+..++.++ |.-+..+-.......|+ +...|.+|+..
T Consensus 73 ~~~l~~~~~~~i~~~~~~~---~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRSS---PGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCSSCSTHHHHHHHTTTTC---TTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCcCCHHHHHHHHHHHHhC---cchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3467777777787776655 55555543332222274 88999999753
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.06 E-value=50 Score=25.31 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=31.3
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhh
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..++.+.+..+...+... + ....+|+.+|++...|.+|+...+
T Consensus 5 ~~~s~~~r~~i~~~~~~G----~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 457777776666665433 2 245789999999999999997654
No 140
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.62 E-value=48 Score=28.93 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=40.9
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccCC
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNS 291 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~~ 291 (303)
..||...+++|.-. .+. ++ -.++|+.+|++...|.+...+.|++.+..+.
T Consensus 196 ~~L~~~erevl~L~-~~G----~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCI-RKG----LS----SKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHH-HTT----CC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHH-HcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 45999999999876 333 22 3478999999999999999999999987654
No 141
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.06 E-value=32 Score=22.47 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChHHHhhhhHh
Q 022056 261 KAKLVEETGLQLKQINNWFIN 281 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N 281 (303)
...+|+.+|++...|.+|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 457899999999999999753
No 142
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=27.53 E-value=15 Score=29.57 Aligned_cols=49 Identities=2% Similarity=-0.069 Sum_probs=39.0
Q ss_pred CCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhcccc
Q 022056 233 GKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHS 289 (303)
Q Consensus 233 ~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~ 289 (303)
..||...+.+|.-.+... + .-.++|+.+|++...|.++....|++.++.
T Consensus 92 ~~Lp~~~r~vl~L~~~~g----~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEG----F----SPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TTSCTTHHHHHTTTSSSC----C----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 348999999886544333 2 235799999999999999999999999875
No 143
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=27.18 E-value=30 Score=24.30 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=19.2
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|..|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4789999999999999998753
No 144
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=26.86 E-value=32 Score=24.63 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~ 282 (303)
...||+.+|++...|+.|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999875
No 145
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.08 E-value=29 Score=28.17 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=34.4
Q ss_pred CCcchHHHHHHHHHHc-CCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhh
Q 022056 235 LPGDTTSVLKNWWQQH-SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h-~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R 285 (303)
++....-+|...+..+ ..+|+||.+ .||+.+|++..+|...+.+--.+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 5555555555444432 345999986 59999999999999998875543
No 146
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=25.94 E-value=49 Score=25.24 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=31.1
Q ss_pred CCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 022056 235 LPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 280 (303)
Q Consensus 235 lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~ 280 (303)
+.......+.+|...|...+ -.-..||..+|+++.++...|.
T Consensus 4 ~~~~~~~~~~~~i~~~~~~~----~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 4 LQPNMRTRVCTVINNNIAHE----WTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp -CCCHHHHHHHHHHTSTTSC----CCHHHHHHHTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCC----CCHHHHHHHHCcCHHHHHHHHH
Confidence 44566778889999885443 2456789999999999988874
No 147
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.76 E-value=65 Score=23.89 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=30.9
Q ss_pred CCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhh
Q 022056 234 KLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRK 284 (303)
Q Consensus 234 ~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~ 284 (303)
.++.+.+..+...+... + + ...+|+.+|++...|..|+...+.
T Consensus 17 ~~s~~~r~~i~~~~~~g----~-s---~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG----I-R---PCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp CCCHHHHHHHHHHHHTT----C-C---HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C-C---HHHHHHHHCcCHHHHHHHHHHHHh
Confidence 47777766666665533 2 2 357899999999999999986554
No 148
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.75 E-value=37 Score=24.40 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|++|..+.+
T Consensus 30 ~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 30 KDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4699999999999999998754
No 149
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.69 E-value=34 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~ 282 (303)
..+||+.+|++...|+.|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999884
No 150
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=25.67 E-value=35 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHhhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~R 283 (303)
...||+.+|++...|++|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 151
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=25.28 E-value=1e+02 Score=23.50 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=39.8
Q ss_pred hhccCCCCCcchHHHHHHHHHHcC--CCCCCCHHHHH----HHHHHhCCCh-HHHhhhhHhhhhhc
Q 022056 228 RKRRAGKLPGDTTSVLKNWWQQHS--KWPYPTEDDKA----KLVEETGLQL-KQINNWFINQRKRN 286 (303)
Q Consensus 228 kkrkr~~lpk~~~~~L~~wf~~h~--~~PYPs~~ek~----~LA~~tgLs~-kQI~nWF~N~R~R~ 286 (303)
+|+.+..+..+.-..|..|+.... ..| ||...-. .|+...|++. +-=++|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 344555577788999999998643 446 7776654 4555667652 33467999988886
No 152
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.08 E-value=47 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHhhhhHh
Q 022056 261 KAKLVEETGLQLKQINNWFIN 281 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N 281 (303)
...||+.+|+++.-|..|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 568999999999999999864
No 153
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=24.75 E-value=39 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 022056 100 HERQELDNFLAQYLIVLCTFKEQL 123 (303)
Q Consensus 100 ~~dpELDqFMeaYc~vL~kykeEL 123 (303)
-...+|+.|+.+|+.+|...=.-|
T Consensus 62 V~~~~l~~F~~~Y~~v~K~~M~~L 85 (91)
T 2w9j_A 62 VELDYFTDFFQSYAEVXKGQIVGL 85 (91)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHC--
T ss_pred ECHHHHHHHHHHHHHHHHhCCccc
Confidence 356899999999999998655444
No 154
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=24.38 E-value=41 Score=22.62 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=19.0
Q ss_pred HHHHHHhC--CChHHHhhhhHhhh
Q 022056 262 AKLVEETG--LQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tg--Ls~kQI~nWF~N~R 283 (303)
..||+.+| ++...|++|..+.+
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHCCcCCHHHHHHHHCCCC
Confidence 47899999 99999999998753
No 155
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=24.27 E-value=36 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=18.7
Q ss_pred HHHHHHhCCChHHHhhhhHhh
Q 022056 262 AKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~ 282 (303)
..||+.+|++...|+.|-.+.
T Consensus 28 ~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHhCcCHHHHHHHHCCC
Confidence 478999999999999998775
No 156
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=23.54 E-value=39 Score=26.61 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 022056 100 HERQELDNFLAQYLIVLCTF 119 (303)
Q Consensus 100 ~~dpELDqFMeaYc~vL~ky 119 (303)
-...+|+.|+.+|++||...
T Consensus 70 V~~~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 70 VSSKEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp EETTTHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999764
No 157
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.35 E-value=38 Score=23.93 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHhCCChHHHhhhhHhhh
Q 022056 262 AKLVEETGLQLKQINNWFINQR 283 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N~R 283 (303)
..||+.+|++...|+.|..+.+
T Consensus 31 ~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 31 VTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4899999999999999998754
No 158
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=22.98 E-value=2.7e+02 Score=25.57 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCCCCCCccccccchhhHHHHH--HHHH-hCCChHHHHHHHHhhhcccCCCcccccH------H--HHHHHHHHHHHhhh
Q 022056 16 GGGGGGDVSGHHDQTATVQLIK--AEIA-SHPLYEQLLAAHVSCLRVATPIDQLPLI------D--AQLAQSHHVLRSYG 84 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~iK--a~I~-sHPlYp~Ll~A~i~C~KVgaP~e~~~~l------d--~~~~~~~~~~~~~~ 84 (303)
|++|...+.....| .+.|+ +.|+ +.|| ||......... + ....+...+..+|.
T Consensus 14 ~~~~~~~de~i~~q---~~~i~~~~e~a~~~PL-------------Vg~~~~~~~L~~EYa~~~~~~~~~Ki~~L~~~Y~ 77 (284)
T 4dhi_B 14 AAEAVVTDDEIVLQ---DQQLKTIEDEQKSVPL-------------VATLAPFSILCAEYDNETSAAFLSKATELSEVYG 77 (284)
T ss_dssp ---------------------------CTTCCS-------------BCCCEEGGGGGGCTTSCCSHHHHHHHHHHHTTEE
T ss_pred ccCCcCcHHHHHHH---HHHhHhhhhhhccCCC-------------cCCcCcHHHHHHHhccCchHHHHHHHHHHHHhcc
Confidence 44455555555556 56788 8887 8898 44333221111 1 11223334445565
Q ss_pred ccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 022056 85 SLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQ 125 (303)
Q Consensus 85 ~~~~~~~~~~~~~~~~~dpELDqFMeaYc~vL~kykeEL~k 125 (303)
...+ +.+..+.-++-|+=+|++.|..-+.|+.+
T Consensus 78 ~~R~--------~RGDGNCFyRAf~F~ylE~Ll~~~~e~~r 110 (284)
T 4dhi_B 78 EIRY--------IRGDGNCFYRAILVGLIEIMLKDRARLEK 110 (284)
T ss_dssp EEEC--------BCCSTTHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ceee--------ecCCCchhHHHHHHHHHHHHHhCHHHHHH
Confidence 5543 23345678888998998888876666554
No 159
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.89 E-value=43 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=18.2
Q ss_pred HHHHHHhCCChHHHhhhhHh
Q 022056 262 AKLVEETGLQLKQINNWFIN 281 (303)
Q Consensus 262 ~~LA~~tgLs~kQI~nWF~N 281 (303)
..||+.+|++...|++|-.+
T Consensus 27 ~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999987
No 160
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.74 E-value=58 Score=24.26 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 022056 239 TTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 239 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~ 282 (303)
....+.+|...|...+ -.-..||...|+++..+...|...
T Consensus 6 ~i~~~~~~i~~~~~~~----~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSEG----MSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTSC----CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566678888885333 345578888888888888877543
No 161
>4ah2_B HLA class II histocompatibility antigen gamma CHA class II histocompatibility antigen\,DRB1-1...; MHC II, immune system, SELF antigen; 2.36A {Homo sapiens}
Probab=22.60 E-value=18 Score=31.85 Aligned_cols=15 Identities=60% Similarity=1.168 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCC
Q 022056 8 VMGSSSSGGGGGGGD 22 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (303)
.||||+|||||....
T Consensus 15 ~~~~~~~~~~~~~~~ 29 (229)
T 4ah2_B 15 PMGGGGSGGGGSGGG 29 (229)
T ss_dssp ---------------
T ss_pred ccCCCcCCCCCCCcc
Confidence 467777777764433
No 162
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=22.10 E-value=1.1e+02 Score=24.59 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCccccccc
Q 022056 11 SSSSGGGGGGGDVSGHHDQ 29 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (303)
-++|||+++-|+|+..+.+
T Consensus 2 ~~~~~~~~~~g~m~~~l~~ 20 (124)
T 2d5u_A 2 PLGSMASATLGSSSSSASP 20 (124)
T ss_dssp CCCCCCCCCCCCCCSSCCH
T ss_pred CCCccCccCcCcchHHHHH
Confidence 3566888888888766555
No 163
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=21.87 E-value=51 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHHhhhhHhh
Q 022056 261 KAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 261 k~~LA~~tgLs~kQI~nWF~N~ 282 (303)
...+|+.+|+++..|+.|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3479999999999999999544
No 164
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.02 E-value=80 Score=26.95 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCCCCcchHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhhhhhccccC
Q 022056 232 AGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 290 (303)
Q Consensus 232 r~~lpk~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~R~R~kk~~ 290 (303)
...||+..+++| .|+.+- +. -.++|+.+|++...|.+...|.++|..-.+
T Consensus 173 ~~~Lt~~e~~vl-~~~~~g----~s----~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 222 (236)
T 2q0o_A 173 KQMLSPREMLCL-VWASKG----KT----ASVTANLTGINARTVQHYLDKARAKLDAES 222 (236)
T ss_dssp GGSCCHHHHHHH-HHHHTT----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHH-HHHHcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 356999999998 455443 22 257899999999999999999999987554
No 165
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.24 E-value=73 Score=23.62 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 022056 239 TTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQ 282 (303)
Q Consensus 239 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLs~kQI~nWF~N~ 282 (303)
....+.+|...|...| ++ -..||+..|+++..++..|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678888886444 44 4568888899999888877653
Done!