Citrus Sinensis ID: 022056

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR
ccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHcHHHHHHHccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHccc
*******************************TVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVL************************LDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDL**********************************************************************TTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW****************
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Homeobox protein knotted-1-like 7 May be involved in secondary cell wall biosynthesis.confidentQ9FPQ8
Homeobox protein HD1 Possible developmental regulator.probableP46606
Homeobox protein knotted-1-like 1 (Fragment) probableP56659

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1X2N, chain A
Confidence level:very confident
Coverage over the Query: 228-293
View the alignment between query and template
View the model in PyMOL