BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022057
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1C3V|B Chain B, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1P9L|A Chain A, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
pdb|1P9L|B Chain B, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
Length = 245
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
G++L A A+ + + E++E P+ D PS A + A ++ G N + ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
+ ARG + DG+ VH++ L GL + V F GE +I+HD D S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 284 RKV 286
R++
Sbjct: 226 RRI 228
>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
pdb|1YL5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
Length = 247
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 50 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 109
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
G++L A A+ + + E++E P+ D PS A + A ++ G N + ST
Sbjct: 110 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 169
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
+ ARG + DG+ VH++ L GL + V F GE +I+HD D S +PG++LA+
Sbjct: 170 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 227
Query: 284 RKV 286
R++
Sbjct: 228 RRI 230
>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL7|A Chain A, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|B Chain B, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|C Chain C, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|D Chain D, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|E Chain E, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|F Chain F, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|G Chain G, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|H Chain H, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
Length = 245
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
G++L A A+ + + E++E P+ D PS A + A ++ G N + ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
+ ARG + DG+ VH++ L GL + V F GE +I+HD D S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 284 RKV 286
R++
Sbjct: 226 RRI 228
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161
Y + A F V+Y I E V A++AFC+K + C+
Sbjct: 65 YITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIF 106
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161
Y + A F V+Y I E V A++AFC+K + C+
Sbjct: 65 YITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIF 106
>pdb|1X3U|A Chain A, Solution Structure Of The C-Terminal Transcriptional
Activator Domain Of Fixj From Sinorhizobium Melilot
Length = 79
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 221 DISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVY 255
D + D++AR Q L E +V S V+ GLP+ + Y
Sbjct: 5 DDANDIRARLQTLSERERQVLSAVVAGLPNKSIAY 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,754,074
Number of Sequences: 62578
Number of extensions: 276203
Number of successful extensions: 712
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 14
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)