Query 022057
Match_columns 303
No_of_seqs 264 out of 1623
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0289 DapB Dihydrodipicolina 100.0 3.2E-78 7E-83 549.4 25.6 251 34-300 1-264 (266)
2 TIGR00036 dapB dihydrodipicoli 100.0 3.7E-71 8.1E-76 512.5 28.7 252 35-300 1-265 (266)
3 PRK00048 dihydrodipicolinate r 100.0 4.6E-66 1E-70 476.2 27.8 245 35-300 1-255 (257)
4 PLN02775 Probable dihydrodipic 100.0 1.6E-65 3.4E-70 474.7 25.0 257 29-301 5-281 (286)
5 TIGR02130 dapB_plant dihydrodi 100.0 2.8E-65 6.2E-70 471.1 24.6 243 36-300 1-269 (275)
6 PF05173 DapB_C: Dihydrodipico 100.0 1.2E-40 2.6E-45 278.4 10.9 126 168-299 1-131 (132)
7 PF01113 DapB_N: Dihydrodipico 100.0 6.7E-31 1.4E-35 217.3 13.7 121 36-165 1-124 (124)
8 PRK13303 L-aspartate dehydroge 99.7 8.9E-16 1.9E-20 142.4 20.6 132 35-178 1-134 (265)
9 PF01408 GFO_IDH_MocA: Oxidore 99.7 5E-16 1.1E-20 125.7 12.5 116 36-161 1-118 (120)
10 PRK13304 L-aspartate dehydroge 99.6 2.7E-14 5.8E-19 132.5 21.5 227 35-287 1-255 (265)
11 PRK13302 putative L-aspartate 99.6 3.9E-13 8.5E-18 125.2 21.4 224 35-288 6-262 (271)
12 PRK11579 putative oxidoreducta 99.6 9.3E-14 2E-18 132.9 16.1 143 35-192 4-151 (346)
13 PRK13301 putative L-aspartate 99.6 1.1E-12 2.4E-17 121.1 22.4 230 34-288 1-259 (267)
14 COG0673 MviM Predicted dehydro 99.5 3.9E-14 8.5E-19 133.8 12.4 147 34-192 2-154 (342)
15 PRK10206 putative oxidoreducta 99.5 3.9E-13 8.5E-18 128.9 14.4 145 35-192 1-151 (344)
16 PRK08374 homoserine dehydrogen 99.4 1.1E-12 2.4E-17 125.6 12.8 141 34-179 1-164 (336)
17 PRK06270 homoserine dehydrogen 99.4 2E-12 4.3E-17 124.1 12.6 142 34-180 1-168 (341)
18 TIGR01761 thiaz-red thiazoliny 99.4 4.4E-12 9.5E-17 121.8 13.3 131 35-178 3-136 (343)
19 KOG2741 Dimeric dihydrodiol de 99.4 2.1E-11 4.6E-16 115.5 15.5 148 32-191 3-158 (351)
20 TIGR01921 DAP-DH diaminopimela 99.3 2.4E-11 5.1E-16 115.6 14.8 133 35-181 3-138 (324)
21 PRK06349 homoserine dehydrogen 99.3 2.7E-11 5.8E-16 119.6 12.5 133 35-178 3-145 (426)
22 COG1712 Predicted dinucleotide 99.2 1.2E-10 2.6E-15 104.6 13.4 233 36-292 1-251 (255)
23 PF03447 NAD_binding_3: Homose 99.2 1.8E-11 3.9E-16 99.5 6.6 110 42-161 1-116 (117)
24 TIGR03855 NAD_NadX aspartate d 99.2 1.1E-09 2.4E-14 99.8 18.9 185 60-268 1-198 (229)
25 PRK04207 glyceraldehyde-3-phos 99.1 2.4E-10 5.2E-15 109.8 10.5 95 35-138 1-110 (341)
26 PLN02819 lysine-ketoglutarate 99.1 2.1E-09 4.7E-14 115.4 16.9 134 35-179 569-721 (1042)
27 TIGR03215 ac_ald_DH_ac acetald 99.1 2.2E-09 4.7E-14 100.8 13.8 133 35-178 1-138 (285)
28 PRK08300 acetaldehyde dehydrog 99.0 7.5E-09 1.6E-13 97.7 12.8 152 35-204 4-167 (302)
29 PRK06392 homoserine dehydrogen 98.9 1.4E-08 3.1E-13 97.1 13.2 134 36-175 1-154 (326)
30 COG4091 Predicted homoserine d 98.9 4.8E-09 1E-13 99.7 9.6 122 35-163 17-157 (438)
31 COG3804 Uncharacterized conser 98.9 2.1E-08 4.5E-13 92.8 13.3 157 34-199 1-169 (350)
32 PRK00436 argC N-acetyl-gamma-g 98.8 4.7E-08 1E-12 94.0 10.7 102 34-140 1-102 (343)
33 PRK06813 homoserine dehydrogen 98.7 1.7E-07 3.6E-12 90.4 13.3 138 34-175 1-160 (346)
34 PF01118 Semialdhyde_dh: Semia 98.7 1.1E-07 2.3E-12 77.9 10.1 97 37-140 1-100 (121)
35 COG1748 LYS9 Saccharopine dehy 98.7 1.8E-07 4E-12 91.1 12.6 210 35-266 1-224 (389)
36 PTZ00187 succinyl-CoA syntheta 98.7 3.9E-07 8.5E-12 86.6 13.3 122 35-170 29-152 (317)
37 PLN00125 Succinyl-CoA ligase [ 98.6 5.6E-07 1.2E-11 85.1 13.9 119 36-170 13-133 (300)
38 COG0074 SucD Succinyl-CoA synt 98.6 3.1E-07 6.7E-12 85.2 10.6 115 35-164 8-123 (293)
39 TIGR01019 sucCoAalpha succinyl 98.6 1.1E-06 2.3E-11 82.7 14.0 119 35-169 6-125 (286)
40 PRK05678 succinyl-CoA syntheta 98.6 1.3E-06 2.7E-11 82.4 14.3 117 35-169 8-127 (291)
41 COG0057 GapA Glyceraldehyde-3- 98.6 5E-07 1.1E-11 85.8 11.1 208 35-256 1-246 (335)
42 PF03435 Saccharop_dh: Sacchar 98.5 1E-06 2.2E-11 85.5 11.7 132 38-180 1-141 (386)
43 COG0460 ThrA Homoserine dehydr 98.5 1.5E-06 3.2E-11 83.1 11.4 134 34-180 2-156 (333)
44 PF13380 CoA_binding_2: CoA bi 98.4 2.8E-06 6.1E-11 69.4 10.2 109 37-169 2-113 (116)
45 PF02629 CoA_binding: CoA bind 98.4 2.7E-06 5.9E-11 67.0 9.4 90 35-136 3-92 (96)
46 PF03446 NAD_binding_2: NAD bi 98.4 2.7E-06 5.9E-11 73.1 10.2 114 35-163 1-119 (163)
47 PRK08664 aspartate-semialdehyd 98.3 3.8E-06 8.2E-11 81.0 10.2 98 34-138 2-108 (349)
48 PRK07634 pyrroline-5-carboxyla 98.3 1.1E-05 2.4E-10 73.2 12.3 121 35-169 4-128 (245)
49 PRK11880 pyrroline-5-carboxyla 98.3 5.8E-06 1.3E-10 76.1 10.5 101 34-146 1-103 (267)
50 PRK11559 garR tartronate semia 98.3 1.4E-05 3.1E-10 74.7 12.6 116 34-165 1-123 (296)
51 TIGR01546 GAPDH-II_archae glyc 98.2 4.5E-06 9.8E-11 80.0 9.2 133 38-182 1-152 (333)
52 PRK09436 thrA bifunctional asp 98.2 1.4E-05 3E-10 85.2 13.7 143 34-179 464-623 (819)
53 TIGR00978 asd_EA aspartate-sem 98.2 7.1E-06 1.5E-10 78.9 9.9 94 36-136 1-103 (341)
54 TIGR01850 argC N-acetyl-gamma- 98.2 1E-05 2.2E-10 78.1 10.7 99 36-140 1-102 (346)
55 PLN02700 homoserine dehydrogen 98.2 1.8E-05 3.9E-10 77.0 12.4 139 35-179 3-181 (377)
56 PRK09466 metL bifunctional asp 98.2 2.3E-05 5.1E-10 83.2 13.2 134 34-172 457-610 (810)
57 PRK08955 glyceraldehyde-3-phos 98.1 8.6E-06 1.9E-10 78.2 8.1 152 34-200 1-192 (334)
58 PF00044 Gp_dh_N: Glyceraldehy 98.1 9.8E-06 2.1E-10 69.4 7.3 34 36-70 1-34 (151)
59 PRK06476 pyrroline-5-carboxyla 98.0 3.9E-05 8.4E-10 70.5 10.7 117 36-167 1-120 (258)
60 KOG1255 Succinyl-CoA synthetas 98.0 2.3E-05 5E-10 71.4 8.8 116 36-165 39-155 (329)
61 smart00846 Gp_dh_N Glyceraldeh 98.0 3.7E-05 8E-10 65.7 9.3 33 36-69 1-33 (149)
62 TIGR02717 AcCoA-syn-alpha acet 98.0 7.2E-05 1.6E-09 74.6 12.7 114 35-169 7-132 (447)
63 PF03807 F420_oxidored: NADP o 98.0 3.7E-05 8E-10 59.6 8.4 87 37-135 1-92 (96)
64 PRK05472 redox-sensing transcr 98.0 3.4E-05 7.4E-10 69.2 9.3 92 35-138 84-179 (213)
65 PRK14874 aspartate-semialdehyd 98.0 7.3E-05 1.6E-09 71.7 11.6 88 35-134 1-91 (334)
66 PRK12490 6-phosphogluconate de 98.0 0.00012 2.5E-09 69.0 12.8 113 36-160 1-116 (299)
67 smart00859 Semialdhyde_dh Semi 98.0 5.2E-05 1.1E-09 61.7 8.9 97 37-140 1-102 (122)
68 PRK14618 NAD(P)H-dependent gly 97.9 3.9E-05 8.5E-10 73.0 9.0 122 35-168 4-140 (328)
69 PRK09599 6-phosphogluconate de 97.9 0.00019 4.2E-09 67.6 13.2 118 36-166 1-122 (301)
70 PLN02358 glyceraldehyde-3-phos 97.9 5.1E-05 1.1E-09 73.0 8.5 197 35-251 5-245 (338)
71 PTZ00023 glyceraldehyde-3-phos 97.8 5.3E-05 1.2E-09 72.8 8.2 100 34-137 1-121 (337)
72 PRK07679 pyrroline-5-carboxyla 97.8 0.00023 5.1E-09 66.2 12.3 115 36-166 4-125 (279)
73 PRK11863 N-acetyl-gamma-glutam 97.8 9.9E-05 2.1E-09 70.4 9.8 79 34-135 1-79 (313)
74 PRK05671 aspartate-semialdehyd 97.8 0.00013 2.8E-09 70.2 10.6 120 34-171 3-137 (336)
75 PRK00094 gpsA NAD(P)H-dependen 97.8 9.6E-05 2.1E-09 69.5 9.5 121 35-166 1-139 (325)
76 TIGR00872 gnd_rel 6-phosphoglu 97.8 0.00027 5.8E-09 66.6 12.3 115 36-163 1-118 (298)
77 PLN02688 pyrroline-5-carboxyla 97.8 0.00016 3.6E-09 66.4 10.1 113 36-167 1-121 (266)
78 PRK06928 pyrroline-5-carboxyla 97.8 0.00018 3.8E-09 67.2 10.1 119 35-170 1-127 (277)
79 PRK06598 aspartate-semialdehyd 97.8 0.00048 1E-08 67.1 13.2 121 35-171 1-141 (369)
80 PRK15425 gapA glyceraldehyde-3 97.8 8.3E-05 1.8E-09 71.3 7.9 100 34-137 1-120 (331)
81 COG0002 ArgC Acetylglutamate s 97.8 0.00013 2.8E-09 69.9 9.1 98 34-136 1-100 (349)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 97.7 0.00022 4.8E-09 60.9 9.7 124 37-169 1-139 (157)
83 PLN02237 glyceraldehyde-3-phos 97.7 9.1E-05 2E-09 73.2 8.0 162 31-200 71-269 (442)
84 PRK07729 glyceraldehyde-3-phos 97.7 0.0001 2.2E-09 70.9 8.0 100 34-137 1-120 (343)
85 PRK07680 late competence prote 97.7 0.00032 7E-09 65.0 10.7 99 36-147 1-106 (273)
86 PLN02968 Probable N-acetyl-gam 97.7 0.0002 4.3E-09 70.1 9.7 100 33-139 36-136 (381)
87 TIGR01505 tartro_sem_red 2-hyd 97.7 0.00052 1.1E-08 64.1 12.0 111 37-163 1-118 (291)
88 TIGR03450 mycothiol_INO1 inosi 97.7 0.00051 1.1E-08 65.7 11.7 141 36-180 1-201 (351)
89 PLN02383 aspartate semialdehyd 97.7 0.0003 6.5E-09 67.9 10.4 125 32-171 4-145 (344)
90 PRK12491 pyrroline-5-carboxyla 97.7 0.00048 1E-08 64.3 11.4 119 34-169 1-126 (272)
91 PRK05447 1-deoxy-D-xylulose 5- 97.7 0.00032 7E-09 68.5 10.5 121 35-160 1-145 (385)
92 PRK15059 tartronate semialdehy 97.7 0.00079 1.7E-08 63.4 12.8 116 36-169 1-123 (292)
93 PF10727 Rossmann-like: Rossma 97.6 8E-05 1.7E-09 62.0 5.1 94 35-142 10-108 (127)
94 PRK14620 NAD(P)H-dependent gly 97.6 0.00081 1.7E-08 63.8 12.6 124 36-167 1-140 (326)
95 PTZ00345 glycerol-3-phosphate 97.6 0.0005 1.1E-08 66.9 11.4 128 35-170 11-167 (365)
96 COG2344 AT-rich DNA-binding pr 97.6 0.00038 8.3E-09 61.5 9.4 92 35-138 84-178 (211)
97 PRK15461 NADH-dependent gamma- 97.6 0.00095 2.1E-08 62.8 12.8 116 35-166 1-123 (296)
98 PRK08040 putative semialdehyde 97.6 0.00032 7E-09 67.5 9.7 92 34-136 3-96 (336)
99 PLN03096 glyceraldehyde-3-phos 97.6 0.00014 3.1E-09 71.2 7.2 136 31-181 56-226 (395)
100 TIGR03376 glycerol3P_DH glycer 97.6 0.00012 2.7E-09 70.6 6.4 126 37-170 1-154 (342)
101 PTZ00431 pyrroline carboxylate 97.6 0.00063 1.4E-08 62.8 10.5 93 36-148 4-101 (260)
102 PLN02712 arogenate dehydrogena 97.5 0.0011 2.4E-08 69.3 13.2 128 24-169 360-491 (667)
103 COG0345 ProC Pyrroline-5-carbo 97.5 0.00052 1.1E-08 64.0 9.6 103 35-149 1-107 (266)
104 COG0136 Asd Aspartate-semialde 97.5 0.0012 2.7E-08 63.2 12.3 124 35-169 1-137 (334)
105 PRK07403 glyceraldehyde-3-phos 97.5 0.00022 4.8E-09 68.6 7.3 99 35-137 1-121 (337)
106 PRK14619 NAD(P)H-dependent gly 97.5 0.0007 1.5E-08 64.0 10.4 105 35-167 4-116 (308)
107 PRK06728 aspartate-semialdehyd 97.5 0.00077 1.7E-08 65.2 9.8 117 35-171 5-138 (347)
108 TIGR01532 E4PD_g-proteo D-eryt 97.4 0.0004 8.6E-09 66.6 7.7 98 37-138 1-122 (325)
109 PRK13535 erythrose 4-phosphate 97.4 0.00035 7.6E-09 67.2 7.3 99 35-138 1-123 (336)
110 COG0240 GpsA Glycerol-3-phosph 97.4 0.00093 2E-08 63.9 10.0 128 35-170 1-142 (329)
111 TIGR01692 HIBADH 3-hydroxyisob 97.4 0.0019 4.2E-08 60.4 11.3 108 40-163 1-115 (288)
112 COG1023 Gnd Predicted 6-phosph 97.4 0.00092 2E-08 61.4 8.5 95 36-139 1-122 (300)
113 PLN02256 arogenate dehydrogena 97.3 0.0033 7.2E-08 59.7 12.4 103 35-152 36-141 (304)
114 TIGR01296 asd_B aspartate-semi 97.3 0.0011 2.3E-08 63.9 8.9 86 37-134 1-89 (339)
115 cd01076 NAD_bind_1_Glu_DH NAD( 97.2 0.0015 3.3E-08 59.4 8.8 119 34-168 30-162 (227)
116 TIGR01851 argC_other N-acetyl- 97.2 0.0017 3.8E-08 61.7 9.3 77 36-135 2-78 (310)
117 PRK12439 NAD(P)H-dependent gly 97.2 0.0056 1.2E-07 58.8 13.0 128 34-169 6-147 (341)
118 PTZ00142 6-phosphogluconate de 97.2 0.0049 1.1E-07 62.0 12.9 115 35-158 1-121 (470)
119 TIGR00715 precor6x_red precorr 97.2 0.0013 2.8E-08 61.1 8.1 126 36-177 1-146 (256)
120 PRK07531 bifunctional 3-hydrox 97.2 0.0025 5.5E-08 64.3 10.7 119 35-165 4-141 (495)
121 PF05368 NmrA: NmrA-like famil 97.2 0.0033 7.1E-08 56.2 10.0 115 38-161 1-139 (233)
122 PRK07502 cyclohexadienyl dehyd 97.2 0.0085 1.8E-07 56.5 13.2 102 35-151 6-113 (307)
123 cd01065 NAD_bind_Shikimate_DH 97.1 0.0012 2.5E-08 55.4 6.4 110 35-160 19-136 (155)
124 PLN02272 glyceraldehyde-3-phos 97.1 0.0015 3.3E-08 64.5 8.0 133 35-181 85-249 (421)
125 PLN02712 arogenate dehydrogena 97.1 0.0069 1.5E-07 63.5 13.0 102 35-151 52-156 (667)
126 PRK08655 prephenate dehydrogen 97.0 0.0092 2E-07 59.4 12.8 104 36-152 1-106 (437)
127 COG4693 PchG Oxidoreductase (N 97.0 0.0026 5.7E-08 59.5 8.0 111 36-160 5-120 (361)
128 PF13460 NAD_binding_10: NADH( 97.0 0.019 4.2E-07 49.0 13.0 85 38-135 1-94 (183)
129 PLN02350 phosphogluconate dehy 97.0 0.012 2.6E-07 59.5 13.2 117 35-160 6-129 (493)
130 PRK07417 arogenate dehydrogena 97.0 0.007 1.5E-07 56.4 10.8 98 36-149 1-102 (279)
131 PRK08223 hypothetical protein; 97.0 0.0068 1.5E-07 57.2 10.5 96 35-138 27-152 (287)
132 COG2910 Putative NADH-flavin r 97.0 0.0016 3.5E-08 57.6 5.7 33 36-69 1-33 (211)
133 TIGR03026 NDP-sugDHase nucleot 96.9 0.0083 1.8E-07 59.0 11.4 125 36-171 1-161 (411)
134 TIGR00465 ilvC ketol-acid redu 96.9 0.0074 1.6E-07 57.6 10.0 113 36-168 4-121 (314)
135 PLN02522 ATP citrate (pro-S)-l 96.8 0.0071 1.5E-07 62.5 10.2 81 84-169 59-141 (608)
136 PF03721 UDPG_MGDP_dh_N: UDP-g 96.8 0.0032 7E-08 55.5 6.6 123 36-167 1-155 (185)
137 PRK08507 prephenate dehydrogen 96.8 0.015 3.3E-07 53.9 11.5 90 36-142 1-94 (275)
138 PRK08618 ornithine cyclodeamin 96.8 0.0027 5.8E-08 60.7 6.3 91 36-137 128-222 (325)
139 COG2084 MmsB 3-hydroxyisobutyr 96.7 0.017 3.6E-07 54.5 11.2 113 36-163 1-120 (286)
140 CHL00194 ycf39 Ycf39; Provisio 96.7 0.013 2.7E-07 55.2 10.4 112 36-161 1-141 (317)
141 TIGR02355 moeB molybdopterin s 96.7 0.01 2.2E-07 54.5 9.2 33 35-69 24-56 (240)
142 PRK12475 thiamine/molybdopteri 96.7 0.0091 2E-07 57.6 9.3 95 35-137 24-148 (338)
143 PRK06130 3-hydroxybutyryl-CoA 96.7 0.0055 1.2E-07 57.7 7.7 99 35-144 4-122 (311)
144 PLN02858 fructose-bisphosphate 96.7 0.021 4.5E-07 64.4 13.3 114 34-163 323-445 (1378)
145 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.01 2.2E-07 51.8 8.7 31 37-69 1-31 (174)
146 COG2099 CobK Precorrin-6x redu 96.7 0.022 4.8E-07 52.6 11.1 130 34-180 1-148 (257)
147 COG1810 Uncharacterized protei 96.7 0.031 6.8E-07 50.5 11.8 160 35-212 1-170 (224)
148 PRK08818 prephenate dehydrogen 96.7 0.029 6.4E-07 54.8 12.6 71 35-129 4-74 (370)
149 COG1832 Predicted CoA-binding 96.7 0.01 2.2E-07 49.9 8.1 102 36-157 17-121 (140)
150 TIGR01534 GAPDH-I glyceraldehy 96.6 0.0058 1.3E-07 58.7 7.5 97 37-137 1-121 (327)
151 PRK05808 3-hydroxybutyryl-CoA 96.6 0.012 2.6E-07 54.7 9.3 100 35-144 3-125 (282)
152 TIGR02853 spore_dpaA dipicolin 96.6 0.012 2.6E-07 55.4 9.3 110 35-166 151-265 (287)
153 cd01483 E1_enzyme_family Super 96.6 0.023 5E-07 47.3 10.1 32 37-70 1-32 (143)
154 PRK09414 glutamate dehydrogena 96.6 0.013 2.9E-07 58.4 9.9 118 35-166 232-368 (445)
155 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.011 2.4E-07 53.5 8.5 117 35-167 23-152 (217)
156 PF02593 dTMP_synthase: Thymid 96.6 0.048 1E-06 49.4 12.4 149 44-212 5-167 (217)
157 PRK08229 2-dehydropantoate 2-r 96.6 0.016 3.6E-07 55.0 9.9 96 34-142 1-112 (341)
158 PLN02858 fructose-bisphosphate 96.5 0.03 6.6E-07 63.1 13.2 115 33-162 2-124 (1378)
159 PTZ00434 cytosolic glyceraldeh 96.5 0.0035 7.6E-08 60.7 5.0 35 34-69 2-40 (361)
160 PRK05479 ketol-acid reductoiso 96.5 0.021 4.6E-07 54.9 10.1 93 36-144 18-114 (330)
161 TIGR00873 gnd 6-phosphoglucona 96.5 0.049 1.1E-06 54.8 13.2 114 37-159 1-119 (467)
162 PRK06091 membrane protein FdrA 96.5 0.015 3.2E-07 59.3 9.3 75 87-165 101-175 (555)
163 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.01 2.2E-07 56.3 7.7 80 35-127 178-259 (311)
164 PF04321 RmlD_sub_bind: RmlD s 96.4 0.0083 1.8E-07 56.1 7.0 80 36-135 1-98 (286)
165 PTZ00353 glycosomal glyceralde 96.4 0.0042 9.2E-08 59.9 4.8 34 34-68 1-34 (342)
166 PRK08328 hypothetical protein; 96.4 0.025 5.4E-07 51.5 9.4 33 35-69 27-59 (231)
167 PRK08644 thiamine biosynthesis 96.3 0.025 5.5E-07 50.9 9.2 34 35-70 28-61 (212)
168 PRK08306 dipicolinate synthase 96.3 0.021 4.5E-07 54.0 9.0 114 35-169 152-269 (296)
169 KOG0409 Predicted dehydrogenas 96.3 0.04 8.8E-07 52.2 10.5 128 25-169 26-160 (327)
170 cd01075 NAD_bind_Leu_Phe_Val_D 96.3 0.029 6.3E-07 50.0 9.3 109 36-166 29-140 (200)
171 TIGR01745 asd_gamma aspartate- 96.2 0.02 4.4E-07 55.7 8.5 120 36-171 1-140 (366)
172 PF07755 DUF1611: Protein of u 96.2 0.0099 2.2E-07 56.4 6.0 86 67-161 1-92 (301)
173 PRK07530 3-hydroxybutyryl-CoA 96.2 0.043 9.3E-07 51.3 10.3 32 36-70 5-36 (292)
174 COG1179 Dinucleotide-utilizing 96.2 0.056 1.2E-06 49.8 10.6 94 36-136 31-152 (263)
175 PLN02696 1-deoxy-D-xylulose-5- 96.2 0.041 9E-07 54.9 10.5 122 35-160 57-203 (454)
176 PRK07819 3-hydroxybutyryl-CoA 96.2 0.045 9.8E-07 51.4 10.3 100 36-145 6-129 (286)
177 COG3367 Uncharacterized conser 96.2 0.015 3.2E-07 55.5 6.9 94 58-159 25-125 (339)
178 KOG0455 Homoserine dehydrogena 96.1 0.085 1.8E-06 49.0 11.6 151 35-190 3-173 (364)
179 PRK11908 NAD-dependent epimera 96.1 0.035 7.5E-07 52.7 9.6 33 35-67 1-33 (347)
180 cd00757 ThiF_MoeB_HesA_family 96.1 0.045 9.7E-07 49.6 9.9 124 35-166 21-146 (228)
181 PRK08605 D-lactate dehydrogena 96.1 0.026 5.6E-07 54.2 8.6 105 35-157 146-255 (332)
182 PRK07411 hypothetical protein; 96.1 0.032 7E-07 54.8 9.3 98 35-140 38-164 (390)
183 PRK08293 3-hydroxybutyryl-CoA 96.1 0.038 8.2E-07 51.6 9.4 100 36-144 4-127 (287)
184 PRK09260 3-hydroxybutyryl-CoA 96.1 0.034 7.3E-07 51.9 9.0 99 36-145 2-125 (288)
185 TIGR01915 npdG NADPH-dependent 96.1 0.072 1.6E-06 47.8 10.8 95 36-141 1-105 (219)
186 PLN02353 probable UDP-glucose 96.0 0.07 1.5E-06 53.8 11.7 123 35-165 1-158 (473)
187 PRK11199 tyrA bifunctional cho 96.0 0.068 1.5E-06 52.1 11.3 79 34-139 97-175 (374)
188 PRK14806 bifunctional cyclohex 96.0 0.11 2.5E-06 54.7 13.7 103 36-152 4-111 (735)
189 TIGR02356 adenyl_thiF thiazole 96.0 0.05 1.1E-06 48.5 9.4 125 35-168 21-148 (202)
190 cd01485 E1-1_like Ubiquitin ac 96.0 0.061 1.3E-06 47.8 9.9 124 35-166 19-148 (198)
191 PRK05597 molybdopterin biosynt 96.0 0.039 8.5E-07 53.5 9.3 96 35-138 28-151 (355)
192 PRK06046 alanine dehydrogenase 96.0 0.015 3.3E-07 55.6 6.3 90 35-136 129-223 (326)
193 PLN02545 3-hydroxybutyryl-CoA 96.0 0.036 7.8E-07 51.9 8.7 33 35-70 4-36 (295)
194 PRK06129 3-hydroxyacyl-CoA deh 96.0 0.082 1.8E-06 49.9 11.2 73 35-116 2-92 (308)
195 KOG2018 Predicted dinucleotide 95.9 0.045 9.7E-07 52.2 9.0 120 37-165 76-246 (430)
196 PRK06444 prephenate dehydrogen 95.9 0.023 4.9E-07 50.8 6.8 28 36-64 1-28 (197)
197 COG1091 RfbD dTDP-4-dehydrorha 95.9 0.027 5.9E-07 53.0 7.6 78 36-134 1-96 (281)
198 PRK03369 murD UDP-N-acetylmura 95.9 0.14 3.1E-06 51.5 13.3 133 36-191 13-171 (488)
199 PRK06545 prephenate dehydrogen 95.9 0.13 2.8E-06 49.8 12.4 102 37-151 2-108 (359)
200 PRK07878 molybdopterin biosynt 95.9 0.047 1E-06 53.6 9.5 96 35-138 42-165 (392)
201 PRK08762 molybdopterin biosynt 95.9 0.055 1.2E-06 52.7 9.9 34 35-70 135-168 (376)
202 PRK05600 thiamine biosynthesis 95.9 0.055 1.2E-06 52.8 9.8 96 35-138 41-164 (370)
203 PRK11064 wecC UDP-N-acetyl-D-m 95.9 0.11 2.5E-06 51.3 12.1 33 35-70 3-35 (415)
204 PRK08289 glyceraldehyde-3-phos 95.9 0.034 7.4E-07 55.6 8.3 34 34-68 126-163 (477)
205 PLN03139 formate dehydrogenase 95.8 0.058 1.3E-06 53.0 9.8 65 35-114 199-263 (386)
206 PF01488 Shikimate_DH: Shikima 95.8 0.017 3.6E-07 48.2 5.1 71 35-115 12-84 (135)
207 PLN02778 3,5-epimerase/4-reduc 95.8 0.071 1.5E-06 50.0 9.7 37 28-65 2-38 (298)
208 PRK08057 cobalt-precorrin-6x r 95.8 0.056 1.2E-06 50.0 8.8 124 34-177 1-144 (248)
209 PF00899 ThiF: ThiF family; I 95.7 0.056 1.2E-06 44.7 8.0 120 36-163 3-124 (135)
210 PLN00016 RNA-binding protein; 95.7 0.062 1.4E-06 51.9 9.5 97 32-134 49-161 (378)
211 TIGR03649 ergot_EASG ergot alk 95.7 0.13 2.9E-06 47.2 11.3 120 37-164 1-136 (285)
212 PRK07574 formate dehydrogenase 95.7 0.091 2E-06 51.6 10.6 64 36-114 193-256 (385)
213 PRK10124 putative UDP-glucose 95.7 0.13 2.8E-06 51.7 11.7 86 35-136 143-236 (463)
214 KOG2742 Predicted oxidoreducta 95.7 0.0046 9.9E-08 59.2 1.3 109 35-155 3-112 (367)
215 PRK15181 Vi polysaccharide bio 95.6 0.072 1.6E-06 50.8 9.3 32 35-67 15-46 (348)
216 PF02737 3HCDH_N: 3-hydroxyacy 95.6 0.012 2.7E-07 51.4 3.7 30 37-69 1-30 (180)
217 PRK06522 2-dehydropantoate 2-r 95.6 0.12 2.6E-06 48.0 10.5 95 36-142 1-105 (304)
218 TIGR02371 ala_DH_arch alanine 95.5 0.028 6E-07 53.8 6.1 92 35-137 128-223 (325)
219 COG1052 LdhA Lactate dehydroge 95.5 0.098 2.1E-06 50.2 9.7 87 11-114 117-208 (324)
220 PRK05690 molybdopterin biosynt 95.5 0.13 2.8E-06 47.2 10.1 33 35-69 32-64 (245)
221 PRK06035 3-hydroxyacyl-CoA deh 95.4 0.059 1.3E-06 50.4 7.9 32 36-70 4-35 (291)
222 COG1064 AdhP Zn-dependent alco 95.4 0.095 2.1E-06 50.6 9.4 138 36-191 168-311 (339)
223 cd05313 NAD_bind_2_Glu_DH NAD( 95.4 0.13 2.9E-06 47.7 10.0 119 35-167 38-179 (254)
224 PRK15057 UDP-glucose 6-dehydro 95.4 0.21 4.5E-06 49.1 11.8 30 36-69 1-30 (388)
225 PRK07688 thiamine/molybdopteri 95.4 0.17 3.8E-06 48.8 11.0 34 35-70 24-57 (339)
226 cd01492 Aos1_SUMO Ubiquitin ac 95.3 0.11 2.4E-06 46.1 9.0 34 35-70 21-54 (197)
227 TIGR00243 Dxr 1-deoxy-D-xylulo 95.3 0.19 4.2E-06 49.3 11.1 99 35-137 1-124 (389)
228 cd00755 YgdL_like Family of ac 95.2 0.14 3E-06 46.8 9.4 33 35-69 11-43 (231)
229 TIGR01214 rmlD dTDP-4-dehydror 95.2 0.097 2.1E-06 47.9 8.5 59 37-115 1-59 (287)
230 PRK05476 S-adenosyl-L-homocyst 95.2 0.092 2E-06 52.2 8.8 102 35-152 212-314 (425)
231 COG1260 INO1 Myo-inositol-1-ph 95.2 0.088 1.9E-06 50.7 8.2 145 33-180 3-210 (362)
232 KOG2380 Prephenate dehydrogena 95.2 0.047 1E-06 52.7 6.2 101 35-151 52-156 (480)
233 PRK06141 ornithine cyclodeamin 95.1 0.03 6.6E-07 53.2 5.0 90 35-135 125-217 (314)
234 PRK07340 ornithine cyclodeamin 95.1 0.024 5.1E-07 53.8 4.1 87 36-134 126-214 (304)
235 PRK14106 murD UDP-N-acetylmura 95.1 0.35 7.6E-06 47.7 12.6 140 36-191 6-164 (450)
236 PRK08125 bifunctional UDP-gluc 95.1 0.098 2.1E-06 54.6 9.0 33 35-67 315-347 (660)
237 TIGR03025 EPS_sugtrans exopoly 95.1 0.27 5.9E-06 48.7 11.7 89 35-136 125-221 (445)
238 COG0287 TyrA Prephenate dehydr 95.1 0.32 6.9E-06 45.8 11.5 105 34-152 2-112 (279)
239 PRK09987 dTDP-4-dehydrorhamnos 95.0 0.13 2.8E-06 48.1 8.9 86 36-138 1-104 (299)
240 TIGR03023 WcaJ_sugtrans Undeca 95.0 0.31 6.8E-06 48.4 12.0 89 35-136 128-224 (451)
241 PF00208 ELFV_dehydrog: Glutam 95.0 0.056 1.2E-06 49.8 6.0 119 36-167 33-172 (244)
242 PRK13243 glyoxylate reductase; 94.9 0.12 2.6E-06 49.7 8.5 64 35-115 150-213 (333)
243 PRK13403 ketol-acid reductoiso 94.9 0.13 2.9E-06 49.4 8.6 149 36-212 17-168 (335)
244 PRK07066 3-hydroxybutyryl-CoA 94.9 0.19 4.2E-06 48.2 9.7 32 36-70 8-39 (321)
245 PRK11150 rfaD ADP-L-glycero-D- 94.9 0.14 2.9E-06 47.6 8.6 32 38-70 2-33 (308)
246 PF02670 DXP_reductoisom: 1-de 94.9 0.15 3.3E-06 42.5 7.9 32 38-69 1-33 (129)
247 cd01336 MDH_cytoplasmic_cytoso 94.9 0.19 4.2E-06 48.1 9.7 34 35-69 2-41 (325)
248 PF00056 Ldh_1_N: lactate/mala 94.8 0.062 1.4E-06 45.2 5.6 128 36-182 1-134 (141)
249 PRK08268 3-hydroxy-acyl-CoA de 94.8 0.13 2.9E-06 52.2 9.0 32 36-70 8-39 (507)
250 PLN02427 UDP-apiose/xylose syn 94.8 0.19 4.1E-06 48.5 9.7 33 35-67 14-46 (386)
251 cd01491 Ube1_repeat1 Ubiquitin 94.8 0.28 6.1E-06 46.3 10.5 123 35-170 19-144 (286)
252 TIGR02354 thiF_fam2 thiamine b 94.8 0.2 4.4E-06 44.6 9.1 34 35-70 21-54 (200)
253 TIGR03570 NeuD_NnaD sugar O-ac 94.8 0.31 6.6E-06 42.0 10.0 85 37-133 1-86 (201)
254 COG4569 MhpF Acetaldehyde dehy 94.8 0.18 3.8E-06 45.6 8.4 97 34-138 3-103 (310)
255 PRK09496 trkA potassium transp 94.7 0.28 6E-06 48.3 10.8 128 36-175 1-136 (453)
256 COG0373 HemA Glutamyl-tRNA red 94.7 0.094 2E-06 51.9 7.2 85 35-132 178-267 (414)
257 PRK07877 hypothetical protein; 94.6 0.14 3.1E-06 54.1 8.8 95 35-138 107-229 (722)
258 COG1086 Predicted nucleoside-d 94.6 0.18 3.9E-06 51.6 9.2 89 35-135 116-209 (588)
259 PRK04663 murD UDP-N-acetylmura 94.6 0.87 1.9E-05 45.1 14.0 137 35-191 7-162 (438)
260 TIGR03022 WbaP_sugtrans Undeca 94.6 0.46 9.9E-06 47.3 12.0 93 35-140 125-225 (456)
261 PRK12921 2-dehydropantoate 2-r 94.5 0.27 5.8E-06 45.8 9.6 95 36-142 1-107 (305)
262 PTZ00082 L-lactate dehydrogena 94.5 1.7 3.7E-05 41.5 15.3 70 35-114 6-82 (321)
263 COG0569 TrkA K+ transport syst 94.5 0.19 4.2E-06 45.5 8.4 126 36-175 1-132 (225)
264 PRK00141 murD UDP-N-acetylmura 94.5 1 2.2E-05 45.3 14.2 137 35-191 15-177 (473)
265 KOG1502 Flavonol reductase/cin 94.5 0.36 7.8E-06 46.4 10.4 96 34-136 5-127 (327)
266 cd01484 E1-2_like Ubiquitin ac 94.5 0.28 6.2E-06 44.9 9.4 31 37-69 1-31 (234)
267 TIGR00936 ahcY adenosylhomocys 94.5 0.38 8.2E-06 47.6 10.8 84 35-134 195-279 (406)
268 PRK05865 hypothetical protein; 94.5 0.3 6.4E-06 52.7 10.8 111 36-160 1-121 (854)
269 PRK15116 sulfur acceptor prote 94.4 0.3 6.5E-06 45.7 9.5 121 35-162 30-152 (268)
270 PRK05086 malate dehydrogenase; 94.4 0.44 9.6E-06 45.4 10.9 99 36-140 1-120 (312)
271 PLN02477 glutamate dehydrogena 94.4 0.3 6.6E-06 48.4 9.9 116 35-167 206-336 (410)
272 TIGR02992 ectoine_eutC ectoine 94.4 0.089 1.9E-06 50.3 6.1 89 35-134 129-221 (326)
273 PLN00106 malate dehydrogenase 94.3 0.24 5.2E-06 47.6 8.9 44 27-70 10-53 (323)
274 PRK02472 murD UDP-N-acetylmura 94.3 0.97 2.1E-05 44.6 13.5 139 36-191 6-164 (447)
275 PRK01710 murD UDP-N-acetylmura 94.3 0.8 1.7E-05 45.7 13.0 138 36-191 15-173 (458)
276 cd05293 LDH_1 A subgroup of L- 94.3 0.18 3.9E-06 48.1 8.0 72 35-114 3-79 (312)
277 COG0300 DltE Short-chain dehyd 94.2 0.42 9E-06 44.7 10.0 87 33-139 4-93 (265)
278 PRK14851 hypothetical protein; 94.2 0.16 3.5E-06 53.4 8.1 32 35-68 43-74 (679)
279 PRK06249 2-dehydropantoate 2-r 94.2 0.44 9.5E-06 45.0 10.3 96 35-142 5-111 (313)
280 PRK06436 glycerate dehydrogena 94.1 0.36 7.8E-06 45.9 9.6 59 35-114 122-181 (303)
281 COG2085 Predicted dinucleotide 94.1 0.4 8.7E-06 43.3 9.2 87 35-134 1-90 (211)
282 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.0 0.2 4.4E-06 50.9 8.2 32 36-70 6-37 (503)
283 PRK15204 undecaprenyl-phosphat 94.0 0.72 1.6E-05 46.5 12.1 88 36-134 147-238 (476)
284 PRK08291 ectoine utilization p 94.0 0.14 3E-06 49.1 6.6 88 36-134 133-224 (330)
285 PF02826 2-Hacid_dh_C: D-isome 94.0 0.17 3.7E-06 43.9 6.7 64 35-114 36-99 (178)
286 PF02571 CbiJ: Precorrin-6x re 94.0 0.23 4.9E-06 46.0 7.7 127 36-177 1-147 (249)
287 PRK15182 Vi polysaccharide bio 93.9 0.51 1.1E-05 46.9 10.6 32 35-70 6-37 (425)
288 PRK00258 aroE shikimate 5-dehy 93.9 0.15 3.2E-06 47.6 6.5 126 35-179 123-255 (278)
289 PRK14030 glutamate dehydrogena 93.9 0.34 7.3E-06 48.5 9.3 120 35-167 228-369 (445)
290 PTZ00079 NADP-specific glutama 93.9 0.5 1.1E-05 47.4 10.4 138 35-186 237-401 (454)
291 PLN00112 malate dehydrogenase 93.8 0.17 3.7E-06 50.6 7.1 24 35-58 100-123 (444)
292 PRK12480 D-lactate dehydrogena 93.8 0.34 7.3E-06 46.6 8.8 61 36-115 147-207 (330)
293 COG0743 Dxr 1-deoxy-D-xylulose 93.8 0.46 1E-05 46.2 9.6 97 35-137 1-120 (385)
294 PLN00141 Tic62-NAD(P)-related 93.7 0.78 1.7E-05 41.4 10.8 33 35-68 17-49 (251)
295 cd01337 MDH_glyoxysomal_mitoch 93.7 0.26 5.6E-06 47.1 7.8 35 36-70 1-35 (310)
296 PLN02260 probable rhamnose bio 93.7 0.31 6.7E-06 50.8 9.1 30 33-63 378-407 (668)
297 TIGR03589 PseB UDP-N-acetylglu 93.7 2.7 5.8E-05 39.7 14.8 33 36-69 5-38 (324)
298 cd00401 AdoHcyase S-adenosyl-L 93.7 0.32 6.9E-06 48.3 8.7 82 36-133 203-285 (413)
299 PF10087 DUF2325: Uncharacteri 93.7 0.92 2E-05 35.4 9.7 83 37-141 1-87 (97)
300 COG0111 SerA Phosphoglycerate 93.7 0.5 1.1E-05 45.4 9.7 63 36-114 143-205 (324)
301 PRK14852 hypothetical protein; 93.6 0.34 7.3E-06 52.8 9.3 32 35-68 332-363 (989)
302 PTZ00117 malate dehydrogenase; 93.6 0.31 6.6E-06 46.5 8.2 71 35-114 5-81 (319)
303 PRK06988 putative formyltransf 93.6 0.15 3.2E-06 48.7 5.9 72 34-114 1-85 (312)
304 PRK00045 hemA glutamyl-tRNA re 93.6 0.14 3E-06 50.7 6.0 80 35-127 182-266 (423)
305 PLN02166 dTDP-glucose 4,6-dehy 93.6 0.45 9.7E-06 47.4 9.6 33 35-69 120-152 (436)
306 PRK06223 malate dehydrogenase; 93.5 0.25 5.4E-06 46.5 7.3 33 35-69 2-34 (307)
307 PRK04308 murD UDP-N-acetylmura 93.5 2.7 5.8E-05 41.6 14.9 142 36-191 6-168 (445)
308 PTZ00325 malate dehydrogenase; 93.5 1 2.2E-05 43.2 11.4 37 33-69 6-42 (321)
309 TIGR01035 hemA glutamyl-tRNA r 93.5 0.24 5.1E-06 49.1 7.3 87 36-135 181-274 (417)
310 PF07991 IlvN: Acetohydroxy ac 93.4 0.37 8.1E-06 41.9 7.6 149 36-212 5-157 (165)
311 PLN00203 glutamyl-tRNA reducta 93.4 0.21 4.6E-06 50.9 7.1 83 35-127 266-353 (519)
312 cd01490 Ube1_repeat2 Ubiquitin 93.4 0.43 9.3E-06 47.7 9.0 93 37-137 1-130 (435)
313 PRK05993 short chain dehydroge 93.4 0.63 1.4E-05 42.6 9.6 79 34-139 3-85 (277)
314 PLN02695 GDP-D-mannose-3',5'-e 93.3 0.45 9.8E-06 46.0 8.9 32 35-67 21-52 (370)
315 TIGR01327 PGDH D-3-phosphoglyc 93.2 0.42 9.1E-06 48.8 8.8 64 36-115 139-202 (525)
316 PRK12320 hypothetical protein; 93.2 0.58 1.3E-05 49.4 10.1 85 36-137 1-101 (699)
317 PRK14031 glutamate dehydrogena 93.1 0.57 1.2E-05 46.9 9.4 118 36-166 229-367 (444)
318 KOG0172 Lysine-ketoglutarate r 93.1 0.26 5.6E-06 48.4 6.8 125 34-169 1-129 (445)
319 TIGR03466 HpnA hopanoid-associ 93.1 0.39 8.4E-06 44.4 7.9 32 36-68 1-32 (328)
320 PRK09135 pteridine reductase; 93.0 4.4 9.5E-05 35.7 14.3 172 36-252 7-192 (249)
321 PRK10217 dTDP-glucose 4,6-dehy 93.0 0.26 5.6E-06 46.7 6.7 34 35-69 1-34 (355)
322 PRK05693 short chain dehydroge 93.0 0.78 1.7E-05 41.8 9.6 79 35-140 1-82 (274)
323 TIGR01181 dTDP_gluc_dehyt dTDP 93.0 0.76 1.6E-05 42.1 9.6 30 37-66 1-31 (317)
324 COG0771 MurD UDP-N-acetylmuram 92.9 2 4.4E-05 43.1 13.0 141 35-192 7-167 (448)
325 PLN02657 3,8-divinyl protochlo 92.9 0.5 1.1E-05 46.1 8.7 33 35-68 60-92 (390)
326 PRK06947 glucose-1-dehydrogena 92.9 0.37 7.9E-06 42.9 7.2 86 34-139 1-89 (248)
327 COG0677 WecC UDP-N-acetyl-D-ma 92.9 0.59 1.3E-05 46.1 8.9 130 33-172 7-170 (436)
328 cd05292 LDH_2 A subgroup of L- 92.8 0.57 1.2E-05 44.4 8.7 34 36-70 1-34 (308)
329 cd01493 APPBP1_RUB Ubiquitin a 92.8 1.1 2.3E-05 44.8 10.8 124 35-167 20-148 (425)
330 COG1004 Ugd Predicted UDP-gluc 92.7 0.81 1.8E-05 45.1 9.6 121 36-165 1-151 (414)
331 PLN02206 UDP-glucuronate decar 92.6 0.69 1.5E-05 46.1 9.3 30 36-66 120-149 (442)
332 PF01073 3Beta_HSD: 3-beta hyd 92.6 0.88 1.9E-05 42.4 9.5 30 40-69 2-31 (280)
333 PLN02602 lactate dehydrogenase 92.6 0.49 1.1E-05 45.9 7.9 71 36-114 38-113 (350)
334 cd01489 Uba2_SUMO Ubiquitin ac 92.5 0.68 1.5E-05 44.3 8.7 31 37-69 1-31 (312)
335 cd00704 MDH Malate dehydrogena 92.5 0.51 1.1E-05 45.2 7.9 24 36-59 1-24 (323)
336 PLN02214 cinnamoyl-CoA reducta 92.5 0.91 2E-05 43.2 9.7 34 34-68 9-42 (342)
337 PRK13940 glutamyl-tRNA reducta 92.5 0.22 4.8E-06 49.4 5.5 71 36-119 182-256 (414)
338 PRK15409 bifunctional glyoxyla 92.5 0.35 7.6E-06 46.3 6.7 64 35-114 145-208 (323)
339 TIGR01087 murD UDP-N-acetylmur 92.5 2.3 5E-05 41.8 12.8 117 37-167 1-139 (433)
340 cd01486 Apg7 Apg7 is an E1-lik 92.5 0.77 1.7E-05 43.8 8.9 30 37-68 1-30 (307)
341 PRK08177 short chain dehydroge 92.4 0.74 1.6E-05 40.6 8.4 80 35-140 1-81 (225)
342 PRK06718 precorrin-2 dehydroge 92.4 1.2 2.7E-05 39.6 9.7 88 36-136 11-100 (202)
343 TIGR01381 E1_like_apg7 E1-like 92.3 0.54 1.2E-05 49.1 8.3 32 35-68 338-369 (664)
344 PRK15438 erythronate-4-phospha 92.2 0.43 9.3E-06 46.8 7.1 60 35-114 116-175 (378)
345 PLN02494 adenosylhomocysteinas 92.2 0.87 1.9E-05 45.9 9.4 99 35-151 254-355 (477)
346 cd05291 HicDH_like L-2-hydroxy 92.2 0.39 8.4E-06 45.4 6.6 32 37-70 2-34 (306)
347 KOG2017 Molybdopterin synthase 92.1 0.3 6.4E-06 47.3 5.7 95 36-138 67-189 (427)
348 COG1087 GalE UDP-glucose 4-epi 92.1 0.73 1.6E-05 44.0 8.2 150 36-212 1-154 (329)
349 cd01338 MDH_choloroplast_like 92.1 0.51 1.1E-05 45.2 7.4 23 35-57 2-24 (322)
350 TIGR02197 heptose_epim ADP-L-g 92.0 0.95 2.1E-05 41.7 9.0 30 38-69 1-31 (314)
351 PRK06395 phosphoribosylamine-- 92.0 0.94 2E-05 45.1 9.3 92 34-134 1-93 (435)
352 PRK06182 short chain dehydroge 91.9 2.2 4.8E-05 38.7 11.0 78 36-140 4-84 (273)
353 PRK14982 acyl-ACP reductase; P 91.8 0.33 7.2E-06 47.0 5.8 33 36-69 156-189 (340)
354 PRK10675 UDP-galactose-4-epime 91.8 1.1 2.3E-05 42.0 9.2 30 36-66 1-30 (338)
355 PLN02240 UDP-glucose 4-epimera 91.6 1.3 2.8E-05 41.8 9.5 32 35-67 5-36 (352)
356 TIGR02440 FadJ fatty oxidation 91.6 1 2.2E-05 47.6 9.6 34 34-69 303-336 (699)
357 PLN02725 GDP-4-keto-6-deoxyman 91.5 0.61 1.3E-05 42.8 7.0 56 40-114 2-57 (306)
358 PRK10669 putative cation:proto 91.5 2.4 5.1E-05 43.4 11.9 127 33-175 415-547 (558)
359 PTZ00075 Adenosylhomocysteinas 91.4 1.1 2.5E-05 45.2 9.2 64 35-114 254-317 (476)
360 PRK00066 ldh L-lactate dehydro 91.4 0.53 1.2E-05 44.9 6.6 34 36-70 7-40 (315)
361 COG0604 Qor NADPH:quinone redu 91.4 0.84 1.8E-05 43.7 8.0 96 36-139 144-244 (326)
362 TIGR02622 CDP_4_6_dhtase CDP-g 91.4 1.6 3.4E-05 41.5 9.8 32 36-69 5-36 (349)
363 PF02844 GARS_N: Phosphoribosy 91.3 2.2 4.8E-05 34.0 9.1 31 36-67 1-31 (100)
364 PRK03803 murD UDP-N-acetylmura 91.3 6.6 0.00014 38.8 14.6 121 36-169 7-147 (448)
365 TIGR01759 MalateDH-SF1 malate 91.3 0.88 1.9E-05 43.6 8.0 25 35-59 3-27 (323)
366 TIGR00507 aroE shikimate 5-deh 91.3 0.63 1.4E-05 43.1 6.9 127 35-179 117-248 (270)
367 COG1042 Acyl-CoA synthetase (N 91.3 1.5 3.1E-05 45.7 10.0 111 36-165 11-131 (598)
368 PRK05653 fabG 3-ketoacyl-(acyl 91.2 2.4 5.2E-05 37.1 10.3 84 36-140 6-92 (246)
369 PF01370 Epimerase: NAD depend 91.2 0.85 1.8E-05 39.9 7.4 31 38-69 1-31 (236)
370 TIGR01772 MDH_euk_gproteo mala 91.2 1 2.3E-05 42.9 8.4 34 37-70 1-34 (312)
371 PRK06901 aspartate-semialdehyd 91.2 0.59 1.3E-05 44.9 6.6 115 35-170 3-135 (322)
372 cd00650 LDH_MDH_like NAD-depen 91.1 0.66 1.4E-05 42.8 6.8 69 38-113 1-77 (263)
373 PRK00257 erythronate-4-phospha 91.1 1.5 3.4E-05 43.0 9.6 59 36-114 117-175 (381)
374 TIGR01777 yfcH conserved hypot 91.1 1.3 2.9E-05 40.1 8.7 30 38-68 1-30 (292)
375 KOG1494 NAD-dependent malate d 91.1 0.47 1E-05 44.8 5.7 35 35-69 28-62 (345)
376 cd05294 LDH-like_MDH_nadp A la 91.0 4.8 0.0001 38.2 12.7 33 36-69 1-34 (309)
377 PRK05884 short chain dehydroge 91.0 1.9 4E-05 38.3 9.4 30 36-66 1-30 (223)
378 cd05311 NAD_bind_2_malic_enz N 91.0 1.3 2.8E-05 40.2 8.5 87 36-135 26-125 (226)
379 PRK12384 sorbitol-6-phosphate 90.9 11 0.00024 33.7 14.5 173 35-251 2-190 (259)
380 PRK10538 malonic semialdehyde 90.8 2 4.3E-05 38.4 9.5 81 36-140 1-84 (248)
381 PRK05565 fabG 3-ketoacyl-(acyl 90.7 2.3 5E-05 37.4 9.7 86 35-140 5-93 (247)
382 PRK06932 glycerate dehydrogena 90.6 0.77 1.7E-05 43.8 6.9 58 36-114 148-205 (314)
383 PRK12549 shikimate 5-dehydroge 90.6 0.45 9.8E-06 44.7 5.3 70 36-115 128-201 (284)
384 PRK09134 short chain dehydroge 90.6 4.7 0.0001 36.1 11.8 87 34-140 8-97 (258)
385 PRK08340 glucose-1-dehydrogena 90.6 1.3 2.9E-05 39.9 8.2 83 36-140 1-86 (259)
386 PLN02260 probable rhamnose bio 90.6 2.3 4.9E-05 44.4 11.0 32 35-66 6-38 (668)
387 PRK15076 alpha-galactosidase; 90.5 4.1 8.8E-05 40.7 12.1 156 35-211 1-184 (431)
388 KOG0069 Glyoxylate/hydroxypyru 90.4 2.5 5.4E-05 40.9 10.1 104 36-156 163-271 (336)
389 COG0334 GdhA Glutamate dehydro 90.4 1.5 3.2E-05 43.5 8.7 117 35-167 207-337 (411)
390 PRK06487 glycerate dehydrogena 90.4 0.88 1.9E-05 43.4 7.1 57 36-114 149-205 (317)
391 PRK11730 fadB multifunctional 90.4 1.8 3.9E-05 45.9 10.0 32 35-69 313-344 (715)
392 cd05297 GH4_alpha_glucosidase_ 90.3 3.5 7.6E-05 40.9 11.5 159 36-211 1-182 (423)
393 PRK12825 fabG 3-ketoacyl-(acyl 90.3 1.4 3.1E-05 38.6 8.0 86 35-140 6-94 (249)
394 KOG1198 Zinc-binding oxidoredu 90.3 0.96 2.1E-05 43.8 7.3 33 35-68 158-190 (347)
395 PRK06823 ornithine cyclodeamin 90.3 0.61 1.3E-05 44.5 5.9 88 36-134 129-219 (315)
396 PRK12464 1-deoxy-D-xylulose 5- 90.3 2.2 4.9E-05 41.9 9.8 94 40-137 1-117 (383)
397 PRK05442 malate dehydrogenase; 90.3 0.96 2.1E-05 43.5 7.3 23 35-57 4-26 (326)
398 PRK06180 short chain dehydroge 90.3 1.4 3.1E-05 40.2 8.2 82 35-140 4-88 (277)
399 PRK10084 dTDP-glucose 4,6 dehy 90.2 0.65 1.4E-05 43.9 6.0 32 36-68 1-32 (352)
400 PRK13581 D-3-phosphoglycerate 90.2 1.2 2.5E-05 45.6 8.2 64 35-115 140-203 (526)
401 PF02423 OCD_Mu_crystall: Orni 90.1 0.42 9.1E-06 45.5 4.7 90 36-134 129-221 (313)
402 PRK03659 glutathione-regulated 90.1 4.7 0.0001 41.9 12.7 122 35-172 400-527 (601)
403 TIGR01757 Malate-DH_plant mala 90.1 0.68 1.5E-05 45.6 6.2 25 35-59 44-68 (387)
404 PRK15469 ghrA bifunctional gly 90.1 1.4 3E-05 42.1 8.1 62 36-114 137-198 (312)
405 TIGR01179 galE UDP-glucose-4-e 90.1 1.8 3.9E-05 39.7 8.8 29 37-66 1-29 (328)
406 PRK08410 2-hydroxyacid dehydro 90.1 1 2.2E-05 42.8 7.2 60 35-114 145-204 (311)
407 TIGR01763 MalateDH_bact malate 90.1 3 6.5E-05 39.5 10.4 69 36-114 2-77 (305)
408 PRK06153 hypothetical protein; 90.0 1.8 3.9E-05 42.6 9.0 32 36-69 177-208 (393)
409 PRK12745 3-ketoacyl-(acyl-carr 90.0 0.47 1E-05 42.4 4.7 87 34-140 1-90 (256)
410 PRK12938 acetyacetyl-CoA reduc 90.0 3.9 8.5E-05 36.2 10.6 82 37-140 5-91 (246)
411 PRK02705 murD UDP-N-acetylmura 90.0 7.1 0.00015 38.6 13.4 31 37-70 2-32 (459)
412 PRK08267 short chain dehydroge 89.9 1.6 3.4E-05 39.3 8.0 83 35-140 1-87 (260)
413 cd05290 LDH_3 A subgroup of L- 89.9 0.69 1.5E-05 44.0 5.9 32 37-69 1-32 (307)
414 KOG2711 Glycerol-3-phosphate d 89.8 0.94 2E-05 43.8 6.6 129 33-169 19-178 (372)
415 PRK07454 short chain dehydroge 89.8 5.1 0.00011 35.4 11.2 85 35-140 6-93 (241)
416 PLN03209 translocon at the inn 89.8 2.3 5E-05 44.0 9.9 32 36-68 81-112 (576)
417 PRK08017 oxidoreductase; Provi 89.7 5.3 0.00011 35.5 11.3 31 35-66 2-32 (256)
418 PLN02662 cinnamyl-alcohol dehy 89.7 1.2 2.7E-05 41.2 7.4 32 36-68 5-36 (322)
419 COG3010 NanE Putative N-acetyl 89.7 4.4 9.6E-05 36.6 10.3 130 18-168 12-192 (229)
420 PRK06407 ornithine cyclodeamin 89.6 0.82 1.8E-05 43.3 6.2 88 36-134 118-209 (301)
421 PF02254 TrkA_N: TrkA-N domain 89.5 4.6 9.9E-05 31.7 9.6 110 38-163 1-116 (116)
422 PLN02928 oxidoreductase family 89.5 0.95 2.1E-05 43.8 6.6 67 36-114 160-234 (347)
423 KOG1014 17 beta-hydroxysteroid 89.5 1.1 2.4E-05 42.7 6.8 84 38-141 52-137 (312)
424 TIGR01202 bchC 2-desacetyl-2-h 89.4 3.6 7.8E-05 38.4 10.3 124 37-181 147-271 (308)
425 PRK06953 short chain dehydroge 89.3 2.1 4.5E-05 37.6 8.2 79 35-140 1-80 (222)
426 PLN02306 hydroxypyruvate reduc 89.3 1.2 2.7E-05 43.7 7.3 70 36-114 166-244 (386)
427 PLN00198 anthocyanidin reducta 89.2 1.4 3.1E-05 41.4 7.5 36 30-67 5-40 (338)
428 COG0039 Mdh Malate/lactate deh 89.2 1.4 3E-05 42.2 7.3 33 36-70 1-34 (313)
429 KOG4354 N-acetyl-gamma-glutamy 89.1 1.2 2.6E-05 41.3 6.6 43 35-77 19-61 (340)
430 PRK11154 fadJ multifunctional 89.1 3.1 6.8E-05 44.1 10.6 35 33-69 307-341 (708)
431 PF13727 CoA_binding_3: CoA-bi 89.1 4.9 0.00011 33.4 10.1 34 36-70 78-113 (175)
432 TIGR02825 B4_12hDH leukotriene 89.1 3.3 7.1E-05 38.6 9.8 32 36-68 140-171 (325)
433 COG1063 Tdh Threonine dehydrog 89.1 3.8 8.3E-05 39.4 10.5 146 37-195 171-325 (350)
434 PRK07904 short chain dehydroge 89.0 3.9 8.4E-05 37.0 10.0 88 35-140 8-97 (253)
435 TIGR00518 alaDH alanine dehydr 89.0 1.5 3.3E-05 42.7 7.7 33 35-70 167-199 (370)
436 PRK07825 short chain dehydroge 88.9 3.7 8.1E-05 37.1 9.8 80 36-140 6-88 (273)
437 PRK03562 glutathione-regulated 88.9 2.5 5.5E-05 44.1 9.6 118 35-169 400-524 (621)
438 TIGR01472 gmd GDP-mannose 4,6- 88.8 2.5 5.3E-05 40.0 8.9 30 37-67 2-31 (343)
439 PRK11790 D-3-phosphoglycerate 88.8 1.1 2.4E-05 44.3 6.7 61 35-114 151-211 (409)
440 PRK06179 short chain dehydroge 88.7 7.1 0.00015 35.2 11.5 76 36-140 5-83 (270)
441 PRK06719 precorrin-2 dehydroge 88.5 3.2 6.8E-05 35.5 8.5 82 36-132 14-96 (157)
442 PLN02650 dihydroflavonol-4-red 88.5 1.6 3.6E-05 41.3 7.5 32 35-67 5-36 (351)
443 PRK01438 murD UDP-N-acetylmura 88.4 0.97 2.1E-05 45.1 6.1 31 36-69 17-47 (480)
444 cd01488 Uba3_RUB Ubiquitin act 88.4 1.4 3.1E-05 41.7 6.8 31 37-69 1-31 (291)
445 PLN02986 cinnamyl-alcohol dehy 88.4 1.8 3.9E-05 40.4 7.5 33 36-69 6-38 (322)
446 PLN02989 cinnamyl-alcohol dehy 88.4 2.2 4.7E-05 39.8 8.1 32 35-67 5-36 (325)
447 PRK12743 oxidoreductase; Provi 88.4 4.4 9.4E-05 36.4 9.8 87 34-140 1-90 (256)
448 TIGR00877 purD phosphoribosyla 88.3 1.9 4.1E-05 42.3 7.9 91 36-134 1-92 (423)
449 PRK13982 bifunctional SbtC-lik 88.3 9.1 0.0002 38.8 12.8 51 17-68 252-304 (475)
450 cd08230 glucose_DH Glucose deh 88.3 1.9 4.1E-05 41.0 7.7 93 36-138 174-271 (355)
451 KOG1203 Predicted dehydrogenas 88.1 2.8 6.2E-05 41.6 8.9 33 35-68 79-111 (411)
452 PRK09880 L-idonate 5-dehydroge 88.0 3.3 7.1E-05 39.1 9.1 92 36-138 171-268 (343)
453 cd08295 double_bond_reductase_ 88.0 1.6 3.5E-05 41.0 7.0 95 36-138 153-253 (338)
454 COG1893 ApbA Ketopantoate redu 88.0 4.1 9E-05 38.7 9.7 108 36-155 1-117 (307)
455 PRK00421 murC UDP-N-acetylmura 88.0 2 4.3E-05 42.8 7.9 86 35-134 7-94 (461)
456 TIGR01470 cysG_Nterm siroheme 87.9 4.8 0.0001 35.9 9.6 86 36-134 10-98 (205)
457 PRK00683 murD UDP-N-acetylmura 87.9 1.7 3.7E-05 42.7 7.3 133 36-191 4-155 (418)
458 PRK06199 ornithine cyclodeamin 87.8 1.1 2.4E-05 43.9 5.9 91 35-134 155-256 (379)
459 PRK07326 short chain dehydroge 87.7 3.6 7.7E-05 36.2 8.7 82 36-139 7-91 (237)
460 PRK12939 short chain dehydroge 87.7 6.2 0.00013 34.8 10.2 84 36-140 8-94 (250)
461 PRK13789 phosphoribosylamine-- 87.5 3.8 8.3E-05 40.7 9.6 117 34-159 3-123 (426)
462 PRK06483 dihydromonapterin red 87.5 7.5 0.00016 34.2 10.6 81 34-140 1-84 (236)
463 PRK06139 short chain dehydroge 87.5 4.4 9.4E-05 38.7 9.6 81 36-139 8-93 (330)
464 cd01080 NAD_bind_m-THF_DH_Cycl 87.5 2 4.3E-05 37.4 6.6 32 35-69 44-76 (168)
465 PF02558 ApbA: Ketopantoate re 87.4 2.2 4.7E-05 35.3 6.7 29 38-68 1-29 (151)
466 PRK09287 6-phosphogluconate de 87.3 8.8 0.00019 38.7 12.1 106 47-160 1-111 (459)
467 PRK07074 short chain dehydroge 87.3 5 0.00011 35.8 9.5 83 35-140 2-87 (257)
468 PRK12557 H(2)-dependent methyl 87.3 8 0.00017 37.4 11.4 92 48-151 32-130 (342)
469 PRK06463 fabG 3-ketoacyl-(acyl 87.3 5.4 0.00012 35.7 9.7 79 36-140 8-89 (255)
470 cd00300 LDH_like L-lactate deh 87.2 1.8 3.8E-05 40.9 6.7 32 38-70 1-32 (300)
471 KOG0023 Alcohol dehydrogenase, 87.1 4.4 9.6E-05 39.1 9.2 96 36-161 183-278 (360)
472 PRK06523 short chain dehydroge 87.1 9.2 0.0002 34.2 11.1 30 36-66 10-39 (260)
473 PRK07589 ornithine cyclodeamin 87.1 1.7 3.8E-05 42.1 6.7 90 36-134 130-222 (346)
474 KOG2733 Uncharacterized membra 87.0 1.6 3.4E-05 42.7 6.2 154 35-204 5-185 (423)
475 TIGR01809 Shik-DH-AROM shikima 87.0 1.4 3.1E-05 41.2 5.9 71 36-116 126-200 (282)
476 PRK08642 fabG 3-ketoacyl-(acyl 86.7 3.7 7.9E-05 36.4 8.2 81 36-139 6-90 (253)
477 COG0027 PurT Formate-dependent 86.7 4.4 9.6E-05 39.0 8.9 127 30-168 7-161 (394)
478 PRK06482 short chain dehydroge 86.7 3.2 6.9E-05 37.7 7.9 83 34-140 1-86 (276)
479 TIGR01408 Ube1 ubiquitin-activ 86.6 3.3 7.2E-05 45.7 9.2 119 36-167 25-148 (1008)
480 PRK05872 short chain dehydroge 86.6 5.3 0.00011 37.0 9.5 81 36-140 10-95 (296)
481 PRK07478 short chain dehydroge 86.6 5.4 0.00012 35.6 9.3 84 36-140 7-93 (254)
482 PLN03154 putative allyl alcoho 86.5 6.2 0.00013 37.6 10.2 95 36-138 160-260 (348)
483 COG3268 Uncharacterized conser 86.5 2.4 5.3E-05 41.0 7.1 167 32-214 3-189 (382)
484 PRK08219 short chain dehydroge 86.5 0.97 2.1E-05 39.4 4.3 30 35-66 3-32 (227)
485 PRK07578 short chain dehydroge 86.5 4.2 9.2E-05 35.0 8.3 28 36-65 1-28 (199)
486 TIGR00514 accC acetyl-CoA carb 86.5 4.9 0.00011 39.9 9.7 121 34-159 1-130 (449)
487 PRK09186 flagellin modificatio 86.4 4.3 9.3E-05 36.1 8.5 84 36-138 5-91 (256)
488 PRK05557 fabG 3-ketoacyl-(acyl 86.3 7.3 0.00016 34.1 9.8 85 36-140 6-93 (248)
489 PRK07806 short chain dehydroge 86.2 7.4 0.00016 34.4 10.0 85 36-140 7-94 (248)
490 PRK12827 short chain dehydroge 86.2 4.7 0.0001 35.5 8.6 89 35-140 6-97 (249)
491 TIGR02441 fa_ox_alpha_mit fatt 86.1 3.5 7.6E-05 43.9 8.9 34 33-69 333-366 (737)
492 cd08293 PTGR2 Prostaglandin re 86.0 2.3 4.9E-05 39.9 6.8 94 36-137 156-255 (345)
493 PRK00885 phosphoribosylamine-- 86.0 3.1 6.8E-05 40.8 8.0 89 36-134 1-90 (420)
494 PRK12742 oxidoreductase; Provi 85.9 4.7 0.0001 35.4 8.4 30 36-66 7-36 (237)
495 PRK07023 short chain dehydroge 85.9 1.1 2.4E-05 39.8 4.4 31 35-66 1-31 (243)
496 TIGR01408 Ube1 ubiquitin-activ 85.9 3.5 7.5E-05 45.5 8.9 110 23-140 404-554 (1008)
497 PRK09009 C factor cell-cell si 85.9 1.9 4.1E-05 38.0 5.9 30 36-65 1-31 (235)
498 PF04131 NanE: Putative N-acet 85.8 7.4 0.00016 34.7 9.4 100 49-167 21-155 (192)
499 PRK00005 fmt methionyl-tRNA fo 85.8 1.8 3.9E-05 41.1 6.0 70 36-114 1-86 (309)
500 PRK05708 2-dehydropantoate 2-r 85.6 2.5 5.4E-05 39.9 6.8 31 35-67 2-32 (305)
No 1
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-78 Score=549.36 Aligned_cols=251 Identities=29% Similarity=0.400 Sum_probs=230.9
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
|||||+|+||+|||||.+++++.+.|+++|+++++++ ..|.|+++++|.+ ..++++++|+.... .++||+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence 5899999999999999999999999999999999964 4688999999884 88999999966665 589999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEE
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEI 188 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieI 188 (303)
||||+|+.+.++++.|+++|+++|||||||++++.+.|++++++ +|+++|||||+|+|||++|++++++++ ||+||
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI 151 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI 151 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 99999999999999999999999999999999999999999999 999999999999999999999998875 69999
Q ss_pred EEccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCC
Q 022057 189 VESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPG 260 (303)
Q Consensus 189 iE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~ 260 (303)
+|+|| +|+|||||||++|+|.|++.+ .+|.|++.++ .|. +++|+|||+|+|++||+|||+|+++|
T Consensus 152 iE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g---~r~----~~~Igi~svR~G~ivG~H~V~F~~~G 224 (266)
T COG0289 152 IEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATG---ARK----EGEIGIHSVRGGDIVGEHEVIFAGEG 224 (266)
T ss_pred hhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcC---CCC----CCCceeEEeecCCcceeEEEEEecCC
Confidence 99999 699999999999999999843 2456776543 332 36899999999999999999999999
Q ss_pred eEEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057 261 EVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV 300 (303)
Q Consensus 261 E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~ 300 (303)
|+|||+|+|+||.+||+||++||+|+.+|+||+|.+.|+.
T Consensus 225 E~iei~H~A~sR~~Fa~Gal~aa~wi~~k~~g~Y~m~dvL 264 (266)
T COG0289 225 ERIEIRHRATSRDSFARGALLAARWLVGKPPGLYDMEDVL 264 (266)
T ss_pred cEEEEEEeeccHHHHHHHHHHHHHHHhCCCCCccchHHhh
Confidence 9999999999999999999999999999999999999875
No 2
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=3.7e-71 Score=512.51 Aligned_cols=252 Identities=27% Similarity=0.391 Sum_probs=225.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
||||+|+||+|+||+.+++.+.+.|+++|++++|+. ..+++++++.+.. +.++++++|++++ . .++||||
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI 73 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI 73 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence 489999997799999999999999999999999942 2366777777653 4689999999998 3 4799999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEEE
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIV 189 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieIi 189 (303)
|||+|+.+.++++.|+++|+|+|+|||||++++.++|.++|+++|++++++||||+|+|+|.++++.+++++ ||+||+
T Consensus 74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~ 153 (266)
T TIGR00036 74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII 153 (266)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999988888764 799999
Q ss_pred EccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCe
Q 022057 190 ESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE 261 (303)
Q Consensus 190 E~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E 261 (303)
|+|| +|+|+|||||++|++.|++.+ ..|+|++.. +.|+ +++|+|||+|+|+++|+|||+|++++|
T Consensus 154 E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~r~----~~~i~i~s~R~g~i~g~h~v~f~~~~e 226 (266)
T TIGR00036 154 ELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLT---GERG----REEIGIHAVRGGDVVGEHTVMFAGDGE 226 (266)
T ss_pred eeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCc---CCCC----CCccceEEEecCCceEEEEEEEcCCCe
Confidence 9999 599999999999999998743 234555433 2454 378999999999999999999999999
Q ss_pred EEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057 262 VYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV 300 (303)
Q Consensus 262 ~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~ 300 (303)
+|||+|+|.||++||+|||+||+||.+|+||+|.|.|++
T Consensus 227 ~i~i~H~a~~R~~fa~Gal~Aa~~l~~~~~g~y~m~dvl 265 (266)
T TIGR00036 227 RLEITHRASSRACFANGAVRAARWLADKEAGVYDMEDVL 265 (266)
T ss_pred EEEEEEEECcHHHhHHHHHHHHHHHcCCCCcEEeHHHhc
Confidence 999999999999999999999999999999999999874
No 3
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=4.6e-66 Score=476.20 Aligned_cols=245 Identities=29% Similarity=0.372 Sum_probs=212.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
||||+|+|++|+||+.+++.+.+.++++|++++|++.. ..... ...+++.++|++++++ ++|+|||||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~--~~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS--PLVGQ----GALGVAITDDLEAVLA------DADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--ccccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence 58999999999999999999988899999999997531 11111 2567888999999983 699999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEEEEcc
Q 022057 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR 192 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H 192 (303)
+|+.+.++++.|+++|+|+|+|||||++++.++|.++++ ++|++++||||+|++++.++++.+++.+ ||+||+|+|
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~--~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H 146 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAK--KIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH 146 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--CCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 999999999999999999999999999999999999664 4999999999999999999988877754 699999999
Q ss_pred C-CCCCCCcHHHHHHHHHHHhcCc-------ccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCeEEE
Q 022057 193 P-NARDFPSPDATQIANNLSNLGQ-------IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264 (303)
Q Consensus 193 h-~K~DaPSGTA~~l~~~i~~~~~-------~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~ie 264 (303)
| +|+|+|||||++|++.|++.+. .++|.+ .+|+. .+++|+|||+|+|+++|+|||+|++++|+||
T Consensus 147 H~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~------~~~~~-~~~~i~i~s~R~g~~~g~h~v~f~~~~e~i~ 219 (257)
T PRK00048 147 HRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREG------ATGAR-VKGEIGIHSVRGGDIVGEHEVIFAGDGERIE 219 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCC------ccCCc-CCCCccEEEEEcCCceEEEEEEEecCCcEEE
Confidence 9 5999999999999999987431 222322 22221 1368999999999999999999999999999
Q ss_pred EEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057 265 IKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV 300 (303)
Q Consensus 265 l~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~ 300 (303)
|+|+|+||++||+|||+||+||.+++||+|.+.|++
T Consensus 220 i~H~a~~R~~fa~Gal~aa~~~~~~~~g~y~~~d~l 255 (257)
T PRK00048 220 IRHDATSRMSFAPGALLAARWLVGKKPGLYGMEDVL 255 (257)
T ss_pred EEEEECcHHhHHHHHHHHHHHHhCCCCcEECHHHhh
Confidence 999999999999999999999999999999998875
No 4
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=1.6e-65 Score=474.74 Aligned_cols=257 Identities=19% Similarity=0.283 Sum_probs=217.7
Q ss_pred cCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeec--CCHHHHHhccccCC
Q 022057 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSK 105 (303)
Q Consensus 29 ~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v~--~dl~~~l~~~~~~~ 105 (303)
.+|++|.+||+|+|++||||+++++++.+ ++++||+.+|+...|.+.+ ++.| .+++++ +|+++++.+.+ ..
T Consensus 5 ~~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-~~ 78 (286)
T PLN02775 5 ASPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-AE 78 (286)
T ss_pred CCCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-cc
Confidence 35667889999999999999999999998 9999999999866666766 6654 278888 99999996411 12
Q ss_pred Ccc-EEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC-
Q 022057 106 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY- 183 (303)
Q Consensus 106 ~~D-VvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~- 183 (303)
.+| |+||||+|+++.+++++|+++|+|+|+|||||++++++ ++++++++|++|+||||+|+|||+++++.+++++
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~---~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~ 155 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLL---KDVEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFP 155 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHH---HHHhcCCccEEEECcccHHHHHHHHHHHHHHHhcc
Confidence 699 99999999999999999999999999999999998655 4455567999999999999999999988877654
Q ss_pred -----CcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEE--EEEcCCCceeEEEE
Q 022057 184 -----KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVH--SMVLPGLPSSTTVY 255 (303)
Q Consensus 184 -----~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ih--S~R~g~ivg~H~V~ 255 (303)
||+||+|+|| +|+|+ ||||++|++.|++++..|.+++.... |.+.-..++++|| |+|+|+ +|||+
T Consensus 156 ~~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~~---R~~~~~~~~igi~~~~lRgg~---~HtV~ 228 (286)
T PLN02775 156 GAFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIELI---RDPKQQLEGVGVPEEHLNGHA---FHTYR 228 (286)
T ss_pred cccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCcccccccccc---cCccccccccceeeecccCCC---cEEEE
Confidence 7899999999 69999 99999999999885544555544321 1110012578895 999999 89999
Q ss_pred EccCCeE--EEEEEecCCccccHHHHHHHHHHhhcC-----CCceEEeeEEee
Q 022057 256 FSRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KVTNHIIFQTVC 301 (303)
Q Consensus 256 f~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~~~~~~~~~ 301 (303)
|.+++|+ |||+|+|+||++||.|||+||+||.+| +||+|+|.|++.
T Consensus 229 f~~~~E~~~iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL~ 281 (286)
T PLN02775 229 LTSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVLR 281 (286)
T ss_pred EecCCCeEEEEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHHh
Confidence 9999999 999999999999999999999999999 589999999763
No 5
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=2.8e-65 Score=471.12 Aligned_cols=243 Identities=19% Similarity=0.250 Sum_probs=216.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeee------cCCHHHHHhccccCCCcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA 108 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D 108 (303)
+||+|+||+||||+++++++.+ ++++||+. +|++..+.|.+++.|. ++++ +.+++++++ ..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence 5899999999999999999987 99999998 8877667888888763 7888 889999985 4599
Q ss_pred -EEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC----
Q 022057 109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY---- 183 (303)
Q Consensus 109 -VvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~---- 183 (303)
|+||||+|+++++++++|+++|+|+|+|||||+++++++|.+. .++|++|+||||+|+|||+++++.+++++
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f 147 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF 147 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999987777544 45999999999999999999988887755
Q ss_pred --CcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCC-ceeEEEEEcCCCce---eEEEEE
Q 022057 184 --KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGED-GVRVHSMVLPGLPS---STTVYF 256 (303)
Q Consensus 184 --~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~-~i~ihS~R~g~ivg---~H~V~f 256 (303)
||+||+|+|| +|+|+ ||||++|++.+++++..|+|+++++ .|. ++ +|+|||+|+ +++| +|||+|
T Consensus 148 ~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~~---~R~----~~~~igi~siR~-~~vgGh~~Htv~f 218 (275)
T TIGR02130 148 AGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIEK---IRD----EKEQIERMGVPE-EHLGGHAFHLYHL 218 (275)
T ss_pred CCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCcccccc---cCC----CCCccceEEecC-cccCCCccEEEEE
Confidence 5999999999 69999 9999999999987666688877654 332 23 899999999 6666 999999
Q ss_pred ccCCeE--EEEEEecCCccccHHHHHHHHHHhhcC-----CCceEEeeEEe
Q 022057 257 SRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KVTNHIIFQTV 300 (303)
Q Consensus 257 ~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~~~~~~~~ 300 (303)
.+++|+ |||+|+|.||++||.|||+||+||.+| +||+|++.|++
T Consensus 219 ~s~~e~i~iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL 269 (275)
T TIGR02130 219 DSADGTVHFEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVL 269 (275)
T ss_pred ecCCCeEEEEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHH
Confidence 999999 699999999999999999999999999 89999999874
No 6
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=100.00 E-value=1.2e-40 Score=278.41 Aligned_cols=126 Identities=26% Similarity=0.268 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhccC---CCcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEE
Q 022057 168 GSILLQQAAISASFH---YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSM 243 (303)
Q Consensus 168 Gv~ll~~~a~~~~~~---~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~ 243 (303)
|+|||+++++.++++ .||+||+|+|| +|+|+|||||++|++.|.+.+...... ..+++.-.+++|+|||+
T Consensus 1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~------~~~~~~~~~~~i~v~s~ 74 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLSE------VARGGREQENEIGVHSV 74 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHHH------HEEECCGETTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccccc------cccccccCCccceEEEE
Confidence 899999998888875 37899999999 699999999999999998854210000 00111002489999999
Q ss_pred EcCCCceeEEEEEccCCeEEEEEEecCCccccHHHHHHHHHHhhc-CCCceEEeeEE
Q 022057 244 VLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH-LKVTNHIIFQT 299 (303)
Q Consensus 244 R~g~ivg~H~V~f~~~~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~-~~~g~~~~~~~ 299 (303)
|+|+++|+|+|+|++++|+|||+|+|+||++||.|||+||+||.+ ++||+|++.|+
T Consensus 75 R~g~i~G~H~V~f~~~~E~i~l~H~a~sR~~Fa~Gal~Aa~~l~~~~~~G~y~m~dv 131 (132)
T PF05173_consen 75 RGGGIVGEHEVIFGSPGETIELTHRAHSRSIFAEGALRAARWLAGKKKPGLYSMDDV 131 (132)
T ss_dssp E-TT--EEEEEEEEETTEEEEEEEEESSTHHHHHHHHHHHHHHTTSSSSEEE-HHHH
T ss_pred EcCCCCEEEEEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEehHHh
Confidence 999999999999999999999999999999999999999999999 56999999876
No 7
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.97 E-value=6.7e-31 Score=217.26 Aligned_cols=121 Identities=36% Similarity=0.604 Sum_probs=108.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|||+|+|++||||+.+++.+.++++++|++++|++. .|+|+++++|.. +.++++++|++++++ .+||+||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence 799999999999999999999999999999999754 799999999985 899999999999995 5999999
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
||+|+++.++++.|+++|+|+|+|||||++++.++|++++++ +|++|||||
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf 124 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF 124 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence 999999999999999999999999999999999999999998 999999998
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.72 E-value=8.9e-16 Score=142.38 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=104.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
||||+|+|| |+||+.+++.+.+.++++|++++++........... ..++++++|++++ . .++|+||+||
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t 69 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA 69 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence 579999999 999999999999999999999997542111112211 1267889999988 4 5899999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEeCCC-CC-HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVigTTG-~~-~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~ 178 (303)
++..+.+++..++++|+|+|++++| ++ .+..++|.++|+++|..+++ ++.++|..-+.+.++.
T Consensus 70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~d~l~~~~~ 134 (265)
T PRK13303 70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGIDALAAAKE 134 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCHHHHHHHHh
Confidence 9999999999999999999999997 55 44468899999999998777 6667777544444433
No 9
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.68 E-value=5e-16 Score=125.68 Aligned_cols=116 Identities=27% Similarity=0.338 Sum_probs=101.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|||+|+|+ |.+|+.+...+... +++++++++|++. ..+..+. +.++++.|+|++++++. .++|+|+.+|
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence 69999998 99999999888877 8999999999752 2233333 36788999999999975 6899999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEE
Q 022057 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~ 161 (303)
++..+.+.+..++++|+|+++++| +.+.++.++|.++++++++.+.+
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999 78999999999999999988664
No 10
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.65 E-value=2.7e-14 Score=132.46 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=148.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
||||+|+|+ |+||+.+++.+.+.+ ++++++++|++. ..+..+. +.++++.++|+++++ .++|+|+++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell------~~~DvVvi~ 68 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELV------EDVDLVVEC 68 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHh------cCCCEEEEc
Confidence 579999998 999999999988764 899999999753 2233333 245678899999988 379999999
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 191 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~--~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~ 191 (303)
++|+.+.+++..++++|+++++.++|. +++..++|.++|+++|..+++.+..-.|...+. .+ .+. ..+.+.+.-.
T Consensus 69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~-a~-~~G-~i~~V~~~~~ 145 (265)
T PRK13304 69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIK-AA-SLG-EIKSVTLTTR 145 (265)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHH-HH-hcC-CccEEEEEEe
Confidence 999999999999999999999998863 677788999999999998887543333333331 11 122 2345555554
Q ss_pred -cCC-CCCC-------------C----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce-e
Q 022057 192 -RPN-ARDF-------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-S 251 (303)
Q Consensus 192 -Hh~-K~Da-------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg-~ 251 (303)
|.. -+++ | +|||. |++..++.+.+..-....++. +...+.+-+. |++.+ .
T Consensus 146 k~p~~~~~~~~~~~~~~~~~~~~~~~f~G~a~---ea~~~fP~n~Nva~a~ala~~-----~~~~v~l~ad--p~~~~n~ 215 (265)
T PRK13304 146 KPPKGLEGALKELGIDLEEIKEPKVLFEGKAF---EAVKKFPANINVAATLSLASI-----YPAKVKIIAD--PNLDRNV 215 (265)
T ss_pred cChHHhCcChhhcCCCccccccceEEEEecHH---HHHHHCCCchhHHHHHHHhcC-----CCceEEEEEC--CCCCCce
Confidence 432 2222 2 67777 444443322221100001110 1134444443 55555 7
Q ss_pred EEEEEccCCeEEEEEEec-----CCccccHHHHHHHHHHhh
Q 022057 252 TTVYFSRPGEVYSIKHDI-----TDVQSLMPGLILAIRKVV 287 (303)
Q Consensus 252 H~V~f~~~~E~iel~H~a-----~sR~~Fa~Gal~Aa~~l~ 287 (303)
|+|..-|++-+++++=+- ..|+++ --|+-+++-|.
T Consensus 216 h~i~~~g~~g~~~~~~~~~p~~~np~ts~-laa~s~~~~~~ 255 (265)
T PRK13304 216 HEITVKGSFGTFKTRVENVPCPDNPKTSA-LAAYSAIRLLK 255 (265)
T ss_pred EEEEEEecceEEEEEEECCcCCCCCchHH-HHHHHHHHHHH
Confidence 999999999998888444 225553 34444444444
No 11
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.57 E-value=3.9e-13 Score=125.17 Aligned_cols=224 Identities=15% Similarity=0.167 Sum_probs=145.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
++||+|+|+ |+||+.+++.+.. .++++|++++|++. ..+.+++ ..++. +.++|++++++ ++|+|++
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE 73 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence 589999998 9999999999987 48999999999753 2233333 24553 56889999983 6899999
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc-
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES- 191 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~- 191 (303)
+++++.+.++...++++|+++++.++|- .++.++|.++++++|.++.+.+.|--|.-. .+.. +. -.++.+-.
T Consensus 74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~d~----l~~g-~i-G~~~~v~~~ 146 (271)
T PRK13302 74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGLDA----VTAA-AE-GTIHSVKMI 146 (271)
T ss_pred CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhHHH----HHHH-Hc-CCceEEEEE
Confidence 9999999999999999999999987762 235678999999999998887666555432 2221 11 11221111
Q ss_pred ---cCC-CCCC---------------C----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCC
Q 022057 192 ---RPN-ARDF---------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGL 248 (303)
Q Consensus 192 ---Hh~-K~Da---------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~i 248 (303)
+.. -+.. | +|||. |++..++.+.+..-....++- |- +...+.+.+. |++
T Consensus 147 trkpp~~~~g~~~~~~~~~dld~~~~~~~~f~G~a~---ea~~~fP~n~Nvaaa~ala~~-g~--d~t~v~l~ad--P~~ 218 (271)
T PRK13302 147 TRKPPDGLKGAPFLVTNNIDIDGLTEPLLLFEGSAR---EAAKGFPANLNVAVALSLAGI-GP--DRTTLEIWAD--PGV 218 (271)
T ss_pred EecCchHhccChhhhhcCCCccccccceEEEEecHH---HHHHHCCcchhHHHHHHHhcc-Cc--cceEEEEEEC--CCC
Confidence 111 1122 2 67777 444444332221111111111 11 0133444444 888
Q ss_pred ce-eEEEEEccCCeEEEEEEecCC------ccccHHHHHHHHHHhhc
Q 022057 249 PS-STTVYFSRPGEVYSIKHDITD------VQSLMPGLILAIRKVVH 288 (303)
Q Consensus 249 vg-~H~V~f~~~~E~iel~H~a~s------R~~Fa~Gal~Aa~~l~~ 288 (303)
.+ .|+|..-|++-+++++ ..| |++ +--|+-+++-|.+
T Consensus 219 ~~n~H~i~~~g~~g~~~~~--~~~~p~~npkts-~laa~s~~~~l~~ 262 (271)
T PRK13302 219 TRNVHRIEVDADSARFSMT--IENIPSENPKTG-RITAQSVIALLRK 262 (271)
T ss_pred CCceEEEEEEeceEEEEEE--EEcCcCCCCchH-HHHHHHHHHHHHh
Confidence 88 8999999999999988 444 555 3345555554443
No 12
>PRK11579 putative oxidoreductase; Provisional
Probab=99.56 E-value=9.3e-14 Score=132.91 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=114.2
Q ss_pred ceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
++||||+|+ |.||+ .++..+...++++|++++|++. ..+. ..+ ++++|+|+++++++ .++|+|+.
T Consensus 4 ~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~------~~~~~~~~~~~~~ell~~----~~vD~V~I 70 (346)
T PRK11579 4 KIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVK------ADWPTVTVVSEPQHLFND----PNIDLIVI 70 (346)
T ss_pred cceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHH------hhCCCCceeCCHHHHhcC----CCCCEEEE
Confidence 589999998 99998 5788888889999999999752 1111 122 45789999999974 68999999
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEE
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV 189 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi 189 (303)
+|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+..| |.....-++++.+. +..-++..+
T Consensus 71 ~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~ 148 (346)
T PRK11579 71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAE--GVLGEVAYF 148 (346)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhc--CCCCCeEEE
Confidence 99999999999999999999999999 88999999999999999988877666 56666666666532 233455555
Q ss_pred Ecc
Q 022057 190 ESR 192 (303)
Q Consensus 190 E~H 192 (303)
+.|
T Consensus 149 ~~~ 151 (346)
T PRK11579 149 ESH 151 (346)
T ss_pred EEE
Confidence 554
No 13
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.56 E-value=1.1e-12 Score=121.11 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=150.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
|.+||+|+|| |.||+.+++.+... ++++|+++.++.. .....+.+ .+++++|+++++. .++|+||
T Consensus 1 ~~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVV 67 (267)
T PRK13301 1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVV 67 (267)
T ss_pred CceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEE
Confidence 5689999999 99999999998764 4599999988652 22223332 2778899999875 5899999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEE
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTTG-~-~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIi 189 (303)
++.+|+++.++...++++|+++++..+| | +++..++|.++|++++..+.+ |.-++|..-..+.++... ...+.+.
T Consensus 68 E~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~i-pSGAigGlD~l~aa~~~~--~~~v~~~ 144 (267)
T PRK13301 68 EAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRV-PAGAIAGLDYLQAVAGRD--DAEVVYE 144 (267)
T ss_pred ECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEE-eChHHHhHHHHHHhhccC--ceEEEEE
Confidence 9999999999999999999999999986 4 455678899999998887555 888888854444443322 2344433
Q ss_pred E-ccCC-CCCCC-----------------cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce
Q 022057 190 E-SRPN-ARDFP-----------------SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS 250 (303)
Q Consensus 190 E-~Hh~-K~DaP-----------------SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg 250 (303)
= .|.. -+.+| +|||. |++..++.+.+..-.....+- |- +...+.+.+. |++.+
T Consensus 145 t~K~P~sl~g~~~~~~~~l~~~~~~~~~F~G~Ar---eA~~~fP~NvNVaaa~aLAg~-G~--d~t~v~l~aD--P~~~~ 216 (267)
T PRK13301 145 SRKPVAAWRAELPGMGIDPDTLAESRTLFSGPAR---EAALRFPKNLNVAATLALAGI-GM--TRTRVEVVVD--PRARG 216 (267)
T ss_pred EecChhHhccChhhcccccccccCCeEEEEeCHH---HHHHHCCchHHHHHHHHHhcc-Cc--cceEEEEEEC--CCCCC
Confidence 2 2432 22222 67777 444443322221100001110 10 0123344443 66666
Q ss_pred -eEEEEEccCCeEEEEEEec----CC-ccccHHHHHHHHHHhhc
Q 022057 251 -STTVYFSRPGEVYSIKHDI----TD-VQSLMPGLILAIRKVVH 288 (303)
Q Consensus 251 -~H~V~f~~~~E~iel~H~a----~s-R~~Fa~Gal~Aa~~l~~ 288 (303)
.|+|..-|+.-+++++=+- .| |++ +--|+-+++-|.+
T Consensus 217 N~H~I~v~g~~g~~~~~~~n~p~~~NPkTS-~laa~Svv~~l~~ 259 (267)
T PRK13301 217 NQHRIQVRSPLGEMQIELVNAPSPANPKTS-WLVAQSVLATIRR 259 (267)
T ss_pred ceEEEEEEeeeEEEEEEEeCCcCCCCCchH-HHHHHHHHHHHHh
Confidence 8999999999999888444 22 444 4445555554443
No 14
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.55 E-value=3.9e-14 Score=133.80 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=114.0
Q ss_pred CceeEEEEcCCc-HHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEE
Q 022057 34 SNIKVIINGAVK-EIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 34 ~~ikV~V~G~~G-rMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVv 110 (303)
+|+||||+|+ | .+++.++..+.+.++ +++++++|++. ..+..++ +.++++ .|+|+++++++ .++|+|
T Consensus 2 ~~irvgiiG~-G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V 71 (342)
T COG0673 2 KMIRVGIIGA-GGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAV 71 (342)
T ss_pred CeeEEEEEcc-cHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEE
Confidence 4799999998 6 555679999988887 79999999763 2334444 367775 89999999974 568999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHHHHHHhccCCCcEE
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVE 187 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~~a~~~~~~~~die 187 (303)
+..|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+.-|+-. .+.-++++... ...-++.
T Consensus 72 ~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~--g~lG~v~ 149 (342)
T COG0673 72 YIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDS--GALGEVV 149 (342)
T ss_pred EEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhc--CCcCceE
Confidence 9999999999999999999999999999 89999999999999999888877666443 33334444322 1234555
Q ss_pred EEEcc
Q 022057 188 IVESR 192 (303)
Q Consensus 188 IiE~H 192 (303)
.++.+
T Consensus 150 ~~~~~ 154 (342)
T COG0673 150 SVQAS 154 (342)
T ss_pred EEEEE
Confidence 55543
No 15
>PRK10206 putative oxidoreductase; Provisional
Probab=99.49 E-value=3.9e-13 Score=128.90 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=112.3
Q ss_pred ceeEEEEcCCcHHHH-HHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCC-eeecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGR-AAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~-~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
|+||||+|+ |++++ .++..+.. .++++|++++|++. +..+.+ ..++ +++|+|+++++++ .++|+|+
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~---~~~~~~---~~~~~~~~~~~~~ell~~----~~iD~V~ 69 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHA---KPEEQA---PIYSHIHFTSDLDEVLND----PDVKLVV 69 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCCh---hHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEE
Confidence 689999998 99774 56776654 46899999999753 112222 2344 6789999999974 6899999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEE
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI 188 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieI 188 (303)
.+|++..+.+.+..|+++||||+|++| ..+.++.++|.++|+++|+.+....| |.....-++++.+. +..-++--
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~ 147 (344)
T PRK10206 70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE 147 (344)
T ss_pred EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence 999999999999999999999999999 78899999999999999999888776 55555556666542 22334444
Q ss_pred EEcc
Q 022057 189 VESR 192 (303)
Q Consensus 189 iE~H 192 (303)
++.|
T Consensus 148 i~~~ 151 (344)
T PRK10206 148 VESH 151 (344)
T ss_pred EEEE
Confidence 5543
No 16
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.43 E-value=1.1e-12 Score=125.61 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=105.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC-eee--------
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPV-------- 90 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v~v-------- 90 (303)
|++||+|+|+ |.+|+.+++.+.++ -+++|+++.|++ ..|-+...+.....+.+ +.-
T Consensus 1 ~~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~ 79 (336)
T PRK08374 1 MEVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY 79 (336)
T ss_pred CeeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence 5799999998 99999999988763 148899999853 22444433221111111 000
Q ss_pred cCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (303)
Q Consensus 91 ~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ 170 (303)
..++++++++ .++||+||||+++.+.++...++++|+|||++++|.-....++|.++++++++++++++|++.|+-
T Consensus 80 ~~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 80 NFSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CCCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 1167788753 579999999999999999999999999999999974334556889999999999999999999998
Q ss_pred HHHHHHHHh
Q 022057 171 LLQQAAISA 179 (303)
Q Consensus 171 ll~~~a~~~ 179 (303)
++.-+-..+
T Consensus 156 ii~~l~~~l 164 (336)
T PRK08374 156 IIGLLRENL 164 (336)
T ss_pred chHHHHhhc
Confidence 765554444
No 17
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.41 E-value=2e-12 Score=124.13 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=105.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCCe-e------ecC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI-P------VMS 92 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv-~------v~~ 92 (303)
|++||+|+|+ |+||+.+++.+.+.+ +++|++++|++ ..|.+..++.....+.+. . .+.
T Consensus 1 m~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 1 MEMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred CeEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 6799999998 999999999987654 79999999963 224344333222122221 1 234
Q ss_pred CHHHHHhccccCCCccEEEEcCCchh-----HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a-----~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
|+++++++ .++|||||+|.+.. ..++++.|+++|+|||+++.+......++|.++|+++++.+.+-+...-
T Consensus 80 d~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~ 155 (341)
T PRK06270 80 SGLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG 155 (341)
T ss_pred CHHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence 88998864 67999999997643 4899999999999999988766556678999999999999988776666
Q ss_pred HHHHHHHHHHHhc
Q 022057 168 GSILLQQAAISAS 180 (303)
Q Consensus 168 Gv~ll~~~a~~~~ 180 (303)
|.-++..+-+.+.
T Consensus 156 glPii~~l~~~l~ 168 (341)
T PRK06270 156 AMPIINLAKETLA 168 (341)
T ss_pred chhHHHHHHhhcc
Confidence 6666655544443
No 18
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.38 E-value=4.4e-12 Score=121.79 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=104.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
++||+|+|+ +||+.+++.+.+.+ +++|+|++|++. ..+.+++ +++|++.|+|+++++++ .++|+|..-
T Consensus 3 ~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~ip 71 (343)
T TIGR01761 3 VQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVVR 71 (343)
T ss_pred CcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEeC
Confidence 589999997 68999999998887 899999999753 3344444 46888999999999953 344555442
Q ss_pred C--CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057 114 T--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (303)
Q Consensus 114 T--~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~ 178 (303)
| ++..+.+.+..|+++||||+|++|=- .+|.++|.++|+++|+.+.+ ..|...+..++++.+.
T Consensus 72 t~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~~ 136 (343)
T TIGR01761 72 SAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIEY 136 (343)
T ss_pred CCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHHc
Confidence 2 46788999999999999999999932 58899999999999998776 5677777777776643
No 19
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.35 E-value=2.1e-11 Score=115.48 Aligned_cols=148 Identities=16% Similarity=0.061 Sum_probs=119.1
Q ss_pred CCCceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCC---eeecCCHHHHHhccccCCC
Q 022057 32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKA 106 (303)
Q Consensus 32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~ 106 (303)
+++.+|+||+|| |+|++..++++...| +++++++.|+.. ..+.+++. ..+ .++|.++|+++.+ ..
T Consensus 3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fAq---~~~~~~~k~y~syEeLakd----~~ 72 (351)
T KOG2741|consen 3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFAQ---RHNIPNPKAYGSYEELAKD----PE 72 (351)
T ss_pred CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHHH---hcCCCCCccccCHHHHhcC----CC
Confidence 345799999999 999999999999888 999999999852 55566662 333 4779999999874 78
Q ss_pred ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEE--cCCCcHHHHHHHHHHHHhccCC
Q 022057 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI--APTLSIGSILLQQAAISASFHY 183 (303)
Q Consensus 107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~--a~N~SiGv~ll~~~a~~~~~~~ 183 (303)
+|||+..++...+++.+..++++||||+|++| ..+.+|.++|.++|+++|+-++. -+-|+.-+.-++.+.. .+.+
T Consensus 73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~ 150 (351)
T KOG2741|consen 73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL 150 (351)
T ss_pred cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence 89998888888899999999999999999999 89999999999999999876553 2445555555666554 4456
Q ss_pred CcEEEEEc
Q 022057 184 KNVEIVES 191 (303)
Q Consensus 184 ~dieIiE~ 191 (303)
-|+.-++.
T Consensus 151 Gdvk~v~~ 158 (351)
T KOG2741|consen 151 GDVKSVEV 158 (351)
T ss_pred ccceEEEE
Confidence 67777776
No 20
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.34 E-value=2.4e-11 Score=115.59 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=103.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
++||+|+|+ |+||+.+++.+.+.|++||+|++|++.. ..++ ...++..+.|.++++ .++|||+.++
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~------~~~~v~~~~d~~e~l------~~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLD------TETPVYAVADDEKHL------DDVDVLILCM 68 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHh------hcCCccccCCHHHhc------cCCCEEEEcC
Confidence 599999998 9999999999999999999999997531 1111 123444455666665 4799999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH-HHHhcc
Q 022057 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASF 181 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVigTTG-~-~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~-a~~~~~ 181 (303)
++..+.+.+..++++|+|||+...- . .++..++|.++|++++...+++.-|-.|..-+.++ .+.+.+
T Consensus 69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp 138 (324)
T TIGR01921 69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLP 138 (324)
T ss_pred CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCC
Confidence 8899999999999999999998752 2 25678899999998666668888999999765554 444444
No 21
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.29 E-value=2.7e-11 Score=119.61 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=103.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (303)
++||+|+|+ |.||+.+++.+.+++ +++|++++|++.. .... . ...+...++|+++++++ .
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~-~---~~~~~~~~~d~~~ll~d----~ 71 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG-V---DLPGILLTTDPEELVND----P 71 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC-C---CCcccceeCCHHHHhhC----C
Confidence 599999998 999999998886543 7899999997521 1110 1 12345678899999964 6
Q ss_pred CccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057 106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (303)
Q Consensus 106 ~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~ 178 (303)
++|+|||.|.+ +.+.++++.|+++|+|||+...++..++.++|.++|+++|+.+.+-+...-|+-++..+-+.
T Consensus 72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~ 145 (426)
T PRK06349 72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREG 145 (426)
T ss_pred CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhh
Confidence 79999999854 67799999999999999998777777888999999999999999887666666555444433
No 22
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=104.61 Aligned_cols=233 Identities=16% Similarity=0.176 Sum_probs=144.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|+|+++|| |.+|+.+.+.+... -++|++++.|+.. +++.++. ...+.+..+++++++ ..+|++|++.
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~---~~~~~~~~s~ide~~------~~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELE---ASVGRRCVSDIDELI------AEVDLVVEAA 68 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHH---hhcCCCccccHHHHh------hccceeeeeC
Confidence 58999999 99999999998865 3699999999763 3444333 233444458899998 3799999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEeCCC-CCH-HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEcc
Q 022057 115 DASTVYDNVKQATAFGMRSVVYVPH-IQL-ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR 192 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVigTTG-~~~-e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~H 192 (303)
+|+++.+++..++++|+++++-++| +.+ +-.+++.++++..+.. ++.|.-++|..-....++. . ....+-..-+-
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~r-v~~pSGAiGGlD~l~aar~-g-~i~~V~lttrK 145 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGAR-VYLPSGAIGGLDALAAARV-G-GIEEVVLTTRK 145 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcE-EEecCccchhHHHHHHhhc-C-CeeEEEEEeec
Confidence 9999999999999999999999997 554 4567799999988877 6668889998543333321 1 11222222221
Q ss_pred C-C----CCC-CC----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCc-eeEEEEEccCCe
Q 022057 193 P-N----ARD-FP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLP-SSTTVYFSRPGE 261 (303)
Q Consensus 193 h-~----K~D-aP----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~iv-g~H~V~f~~~~E 261 (303)
+ . +.| -+ +|.|- |+..+++++.+....-+. +.+ . +.+.|.=+==|.+- -.|+|..-|...
T Consensus 146 pp~~lg~dl~~~ktVlfeG~a~---eA~k~FPkNiNVAaTlsL--A~~--~--e~v~V~lvaDP~~~~NiHev~v~g~fG 216 (255)
T COG1712 146 PPAELGIDLEDKKTVLFEGSAS---EAVKKFPKNINVAATLSL--AGG--F--ERVKVRLVADPEVDRNIHEVEVRGAFG 216 (255)
T ss_pred ChHHhCcCcccCceEEEeccHH---HHHHhCcccccHHHHHHh--hcc--c--cceEEEEEeCchhhcceeEEEEEeccc
Confidence 1 1 111 34 78887 444444432222111010 000 0 11111111001111 158999999999
Q ss_pred EEEEEEec----CCccccHHHHHHHHHHhhcCCCc
Q 022057 262 VYSIKHDI----TDVQSLMPGLILAIRKVVHLKVT 292 (303)
Q Consensus 262 ~iel~H~a----~sR~~Fa~Gal~Aa~~l~~~~~g 292 (303)
+++++=+- .|-++-+.-|.-|.+-|.+..-|
T Consensus 217 ~~~~~~eN~p~~~NPKTSaLaayS~vr~l~~l~~~ 251 (255)
T COG1712 217 TFEIKIENVPLPENPKTSALAAYSAVRLLRNLAEG 251 (255)
T ss_pred eEEEEEecccCCCCcchHHHHHHHHHHHHHHhhhC
Confidence 98887331 12223355677777766665544
No 23
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.23 E-value=1.8e-11 Score=99.50 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=83.1
Q ss_pred cCCcHHHHHHHHHHHhcC---CcEEEEEEecCC-CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCch
Q 022057 42 GAVKEIGRAAVIAVTKAR---GMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117 (303)
Q Consensus 42 G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~ 117 (303)
|+ |.||+.+++.+.+.+ +++++++++++. ...+.... ..+...+.+++++++. .++|||||+|.++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~ 70 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSE 70 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCch
Confidence 77 999999999999876 899999999761 11111111 1245678899999863 4799999999999
Q ss_pred hHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCCeEEE
Q 022057 118 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 118 a~~~~~~~al~~g~~vVigTTG~--~~e~~~~L~~~a~~~~i~vv~ 161 (303)
.+.+++..++++|++||+...+. +....++|.++|+++|+.+.+
T Consensus 71 ~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 71 AVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999987753 336789999999999988765
No 24
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=99.23 E-value=1.1e-09 Score=99.81 Aligned_cols=185 Identities=15% Similarity=0.173 Sum_probs=124.0
Q ss_pred CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057 60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (303)
Q Consensus 60 ~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG 139 (303)
+++|++++|++. ..+.+++ ..+++++++|++++++ .++|+|+++|++..+.++...++++|+|++|.++|
T Consensus 1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 478999999753 2333344 3567889999999986 47999999999999999999999999999999996
Q ss_pred -C-CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhc-cCCCcEEEEEc-cC--CCCCC--C----cHHHHHHH
Q 022057 140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS-FHYKNVEIVES-RP--NARDF--P----SPDATQIA 207 (303)
Q Consensus 140 -~-~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~-~~~~dieIiE~-Hh--~K~Da--P----SGTA~~l~ 207 (303)
+ +.++.++|.++++++|.++++.+++--|. +..+... .....+.++=. |. .|.+. | +|+|.
T Consensus 71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~----d~l~a~~ig~~~~V~i~~~k~p~~~~~~~~~~~~~f~G~a~--- 143 (229)
T TIGR03855 71 ALADRELRERLREVARSSGRKVYIPSGAIGGL----DALKAASLGRIERVVLTTTKPPASLGRDIKEPTTIFEGSAS--- 143 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHH----HHHHhcccCCceEEEEEEecChHHhcCCCCCCEEEEEecHH---
Confidence 4 56788999999999999999987443333 3333322 11234444333 43 24322 3 89998
Q ss_pred HHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce-eEEEEEccCCeEEEEEEe
Q 022057 208 NNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-STTVYFSRPGEVYSIKHD 268 (303)
Q Consensus 208 ~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg-~H~V~f~~~~E~iel~H~ 268 (303)
|++..++...+..-.....+ |. +..+.+-+. |++.+ .|+|..-|++.+++++=+
T Consensus 144 ea~~~fP~n~Nva~a~alA~--g~---d~~v~i~ad--p~~~~n~h~i~~~g~~g~~~~~~~ 198 (229)
T TIGR03855 144 EAIKLFPANINVAATLSLAA--GF---DAKVEIVAD--PEADRNIHEIFVESDFGEMEIRVE 198 (229)
T ss_pred HHHHHCCchHHHHHHHHHhc--CC---CcEEEEEEc--CCCCCcEEEEEEEeccEEEEEEEe
Confidence 45544443222111111111 21 123344443 55555 799999999999999844
No 25
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.14 E-value=2.4e-10 Score=109.79 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=75.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---hcC------------CCCCCeeecCCHHHHHh
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDM------------EQPLEIPVMSDLTMVLG 99 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~---~g~------------~~~~gv~v~~dl~~~l~ 99 (303)
|+||+|+|+ |+|||.+++.+.++|++||+++.|+.. .....+ .|+ ....+++++.++++++
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~--~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~- 76 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKP--DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLL- 76 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCCh--HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhh-
Confidence 689999999 999999999999999999999998532 000000 010 0123577888888887
Q ss_pred ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
.++|+|+|||.+..+.+++..++++|+++|.-.+
T Consensus 77 -----~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 77 -----EKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred -----ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 3799999999999999999999999999998654
No 26
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.10 E-value=2.1e-09 Score=115.40 Aligned_cols=134 Identities=19% Similarity=0.128 Sum_probs=107.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCCCCC-C---eee-cCCHHHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPL-E---IPV-MSDLTMV 97 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~~~~~g~~~~~-g---v~v-~~dl~~~ 97 (303)
|.||+|+|| |+||+.+++.+.+.++.+ +|.+.|... .++..++. .+ + +.+ +.|.+++
T Consensus 569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~---~~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVE---GIENAEAVQLDVSDSESL 642 (1042)
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHH---hcCCCceEEeecCCHHHH
Confidence 569999998 999999999999888877 788888653 33333332 12 3 455 6777777
Q ss_pred HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH--HHHH
Q 022057 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQA 175 (303)
Q Consensus 98 l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l--l~~~ 175 (303)
.+.+ .++|+||..+++..+.+.++.|+++|+|+|+.+ ++.++..+|.+.|+++|++++..-+|..|+.- .+++
T Consensus 643 ~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~ 717 (1042)
T PLN02819 643 LKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKM 717 (1042)
T ss_pred HHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHH
Confidence 6421 369999999999999999999999999999887 77788899999999999999999999999953 4666
Q ss_pred HHHh
Q 022057 176 AISA 179 (303)
Q Consensus 176 a~~~ 179 (303)
....
T Consensus 718 Id~~ 721 (1042)
T PLN02819 718 IDDA 721 (1042)
T ss_pred HHhh
Confidence 6554
No 27
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.07 E-value=2.2e-09 Score=100.76 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=94.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
++||+|+|+ |+||+.++..+.+.+++++++++|.+.. .+.-.++ .++|++. ++++++++++ .++|+|+++
T Consensus 1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~e-s~~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia 71 (285)
T TIGR03215 1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPE-SDGLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA 71 (285)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcc-cHHHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence 479999997 9999999888888899999999986531 1111223 3577765 5689999864 579999999
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCCC----HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~~----~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~ 178 (303)
|++..+.+++..++++|+++++.|+-+. ....+ +++..+..++.++-.+|=+ .+-++.-+-+.
T Consensus 72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~~al~r~ 138 (285)
T TIGR03215 72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIVAAISRV 138 (285)
T ss_pred CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHHHHHHHh
Confidence 9999999999999999999999998541 00111 2333343456766666655 34344434433
No 28
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.97 E-value=7.5e-09 Score=97.70 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=103.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
++||+|+|+ |++|+.+...+.+.++++|++++|.+.. .+....+ .++|++. +++++++++.- ...++|+|+|+
T Consensus 4 klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~~~-~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLAMP-EFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHhCc-CCCCCCEEEEC
Confidence 589999996 9999998888888899999999987531 1111222 3578876 58999998510 00368999999
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCC---------CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYK 184 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~---------~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~ 184 (303)
|+++.+.++...++++|++++..|+-+ +.+ ++....++.++-.||=+. ..++..+.+ ..
T Consensus 78 T~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~------~~~~~~~~~iia~p~~at-----i~~v~Al~~-v~ 145 (302)
T PRK08300 78 TSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLD------EHLDAPNVNMVTCGGQAT-----IPIVAAVSR-VA 145 (302)
T ss_pred CCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHH------HHhcccCCCEEECccHHH-----HHHHHHhcc-cC
Confidence 999999999999999999999999854 332 224434577777666443 222223333 23
Q ss_pred cEEEEEccC--CCCCCCcHHHH
Q 022057 185 NVEIVESRP--NARDFPSPDAT 204 (303)
Q Consensus 185 dieIiE~Hh--~K~DaPSGTA~ 204 (303)
++++-|... .-+-+..||=.
T Consensus 146 ~~~~~eIvat~~s~s~g~gtr~ 167 (302)
T PRK08300 146 PVHYAEIVASIASKSAGPGTRA 167 (302)
T ss_pred cCceeeeeeeehhhccCCcccc
Confidence 445566543 33444556543
No 29
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.93 E-value=1.4e-08 Score=97.07 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=98.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCC--CCeeecC--CHHHHHh
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG 99 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~--~gv~v~~--dl~~~l~ 99 (303)
|||+|+|+ |.+|+.+++.+.+. .+++|+++.|+. ..|-|..++.....+ ......+ +++++++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 58999998 99999999998764 578999999863 234444443211111 1111112 6777775
Q ss_pred ccccCCCccEEEEcCCc-h---hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057 100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT~p-~---a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
.++||+||+|.. + ...++++.++++|+|||+..-|.-....++|.++|+++++.+.+.++..=|.-++.-+
T Consensus 80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 589999999942 2 3578889999999999987666444677899999999999999999888887766644
No 30
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.92 E-value=4.8e-09 Score=99.66 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=89.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-----------------CCCCeeecCCHHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-----------------QPLEIPVMSDLTM 96 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-----------------~~~gv~v~~dl~~ 96 (303)
++||+++|+ |.||+-++..+...|+++++++.|.+. ..+++-+.+|+. +...+.+++|.+.
T Consensus 17 PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~ 95 (438)
T COG4091 17 PIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAEL 95 (438)
T ss_pred ceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhh
Confidence 699999998 999999999999999999999988531 111111112211 2345677889999
Q ss_pred HHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 97 VLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
++.. ...|||||.| .|+...++...++.||||+|+-..-.+---=.-|++.+.+ ..++||.
T Consensus 96 i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS~ 157 (438)
T COG4091 96 IIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYSG 157 (438)
T ss_pred hhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEec
Confidence 8875 6789999999 8999999999999999999986542221111246777888 5667744
No 31
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.92 E-value=2.1e-08 Score=92.84 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=112.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
|.|++.+.|. |..|...++.+.++|+++|||++++ .+.|+|+++++|+. ..||...++++..++. ..-+++.
T Consensus 1 m~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlAt----l~~~~~y 74 (350)
T COG3804 1 MSLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLAT----LADAVIY 74 (350)
T ss_pred CCceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeecccccceec----cccceee
Confidence 5689999995 9999999999999999999999996 46799999999996 5999999999988863 2334555
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCC------CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCc
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN 185 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTT------G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~d 185 (303)
+--.|+ .+....+++.|+|||+--+ +..++..+++.++|.++|..-++..-.-.|.. ...+.-.++..+..
T Consensus 75 ~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pGF~-~dllpmlLsgpcte 151 (350)
T COG3804 75 APLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPGFV-TDLLPMLLSGPCTE 151 (350)
T ss_pred ecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCccHH-HHHHHHHHcccccc
Confidence 555564 7888899999999996422 34577888899999998886666444444432 12222233444444
Q ss_pred EEEEEc---cC-CCCCCC
Q 022057 186 VEIVES---RP-NARDFP 199 (303)
Q Consensus 186 ieIiE~---Hh-~K~DaP 199 (303)
+|-+-. -. .+.|+|
T Consensus 152 ve~ir~~e~~d~~~y~e~ 169 (350)
T COG3804 152 VEFIRSEEFSDLRSYGEP 169 (350)
T ss_pred eEEEeeeehhhHhhcCCc
Confidence 444322 22 366666
No 32
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.76 E-value=4.7e-08 Score=94.00 Aligned_cols=102 Identities=19% Similarity=0.105 Sum_probs=74.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
||+||+|+|++|.+|+.+++.+.+.|+++|+++.++...++...+..+.....-...+.++++... .++|+|+.+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~vD~Vf~a 75 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-----AGADVVFLA 75 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-----cCCCEEEEC
Confidence 679999999999999999999999999999999986444444332211000000113445544322 479999999
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~ 140 (303)
++++.+.+.+..++++|++||--+..|
T Consensus 76 lP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 76 LPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred CCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 999999999999999999998766554
No 33
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.73 E-value=1.7e-07 Score=90.40 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=94.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCC-CCCe--eecCCHHH
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTM 96 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~~~~~g~~~-~~gv--~v~~dl~~ 96 (303)
|+++|+|+|+ |.+|+.+++.+.++. +++|+++.+++. .|-+...+..... .... ....+.++
T Consensus 1 ~~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (346)
T PRK06813 1 MKIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE 79 (346)
T ss_pred CeeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence 5799999998 999999999886542 578999988631 1222222211000 0000 01122333
Q ss_pred HHhccccCCCccEEEEcCCc-----hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057 97 VLGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p-----~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l 171 (303)
.+.. ..+.||+||.|.. +..+++++.++++|+|||...-+.-....++|.++|+++|+.+.|-++..=|+-+
T Consensus 80 ~~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi 156 (346)
T PRK06813 80 RATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT 156 (346)
T ss_pred HhcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence 3321 1258999999864 5678999999999999997665554556788999999999999999988888876
Q ss_pred HHHH
Q 022057 172 LQQA 175 (303)
Q Consensus 172 l~~~ 175 (303)
+.-+
T Consensus 157 I~~l 160 (346)
T PRK06813 157 LDIG 160 (346)
T ss_pred HHHH
Confidence 6555
No 34
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.72 E-value=1.1e-07 Score=77.92 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCC-CeeecC-CHHHHHhccccCCCccEEEEc
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPL-EIPVMS-DLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~~~-gv~v~~-dl~~~l~~~~~~~~~DVvIDf 113 (303)
||+|+|+||.+|+.+++.+.++|+++++.++.++. .|+............ ...+.+ +.+++ .++|+|+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-------SDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-------TTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-------hcCCEEEec
Confidence 79999999999999999999999999999999765 677776554210011 223333 33333 489999999
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~ 140 (303)
++.+...+....+++.|+.||--++.+
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 988899999999999999776544444
No 35
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.70 E-value=1.8e-07 Score=91.10 Aligned_cols=210 Identities=17% Similarity=0.095 Sum_probs=125.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-C--CCCeeecCCHHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-Q--PLEIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-~--~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
|+||.|+|| |++|+.++..++++.+.++.. .|++. .-.++....+.. + ..++.-.+.+.++|+ +.|+|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~i-AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V 72 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTI-ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV 72 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence 689999999 999999999999888787775 44431 111111111000 0 111112335666774 56999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH-HHH-HHHHHHhccCCCcEEE
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS-ILL-QQAAISASFHYKNVEI 188 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv-~ll-~~~a~~~~~~~~dieI 188 (303)
|.+-+|......++.|+++|+++|- |...++...++.+.|+++|+.++...-|+.|+ |++ .++++.+-+...++.|
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~yvD--ts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~i 150 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVDYVD--TSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDI 150 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCCEEE--cccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEE
Confidence 9999999999999999999999984 33333334789999999999999999999999 444 5555555322233334
Q ss_pred EEccC-CCCCCCcHHHHHH--HHHHHhcCc--ccccCcccccccccCccccCCceeEEEEEc---CCCceeEEEEEccCC
Q 022057 189 VESRP-NARDFPSPDATQI--ANNLSNLGQ--IYNREDISTDVKARGQVLGEDGVRVHSMVL---PGLPSSTTVYFSRPG 260 (303)
Q Consensus 189 iE~Hh-~K~DaPSGTA~~l--~~~i~~~~~--~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~---g~ivg~H~V~f~~~~ 260 (303)
.--+- ...|-|=+=|... -..+.+... .+-.+| . + .+++-.+.|. ..++|.+.+++-..+
T Consensus 151 y~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~G---------k-~--~~v~~~~~~~~~~~~~~G~~~~y~~~~~ 218 (389)
T COG1748 151 YVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENG---------K-W--VEVDPLEEREVFEFPVIGYGDVYAFYHD 218 (389)
T ss_pred EEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCC---------E-E--EEecCcccccccccCCCCceeEEecCCc
Confidence 43332 2233332222211 011222110 000111 0 0 1223333333 667888999998888
Q ss_pred eEEEEE
Q 022057 261 EVYSIK 266 (303)
Q Consensus 261 E~iel~ 266 (303)
|..+|-
T Consensus 219 el~sL~ 224 (389)
T COG1748 219 ELRSLV 224 (389)
T ss_pred cHHHHH
Confidence 876543
No 36
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.66 E-value=3.9e-07 Score=86.64 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=97.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
..||.|-|.||+-|+.+.+...+. +.++|+.+.+..-|+... ..|+|+|++++|+.+. .++|+++.|.
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI~V 96 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVIYV 96 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEEec
Confidence 368999999999999999988754 889999998865333211 1389999999999852 3599999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhh-hcCCeEEEcCCCcHHHH
Q 022057 115 DASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMGCLIAPTLSIGSI 170 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVig-TTG~~~e~~~~L~~~a~-~~~i~vv~a~N~SiGv~ 170 (303)
+|..+.+.+..|.++|++.++- |.|+.+.+..+++++++ ++++. ++.|| ++|+.
T Consensus 97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~r-liGPN-c~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTR-LIGPN-CPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCE-EECCC-CceEE
Confidence 9999999999999999988655 45998776667777765 45665 88898 67764
No 37
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=98.64 E-value=5.6e-07 Score=85.08 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=94.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
-||.|.|.+|+-|..+.+...+. +.++++.+.+..-+ . .-.|+|+|.+++++-+. .++|++|-+.+
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~---~------~i~G~~~y~sv~dlp~~----~~~DlAvI~vP 78 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---T------EHLGLPVFNTVAEAKAE----TKANASVIYVP 78 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC---c------eEcCeeccCCHHHHhhc----cCCCEEEEecC
Confidence 68999999999999999987765 89999999875211 1 23588999999999741 13799999999
Q ss_pred chhHHHHHHHHHHcCCC-eEEeCCCCCHHH-HHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057 116 ASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI 170 (303)
Q Consensus 116 p~a~~~~~~~al~~g~~-vVigTTG~~~e~-~~~L~~~a~~~~i~vv~a~N~SiGv~ 170 (303)
++.+.+.++.|.+.|++ +||-|.||.+.. .+.+.++++++++. ++.|| ++|+.
T Consensus 79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGPN-c~Gii 133 (300)
T PLN00125 79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGPN-CPGII 133 (300)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECCC-Cceee
Confidence 99999999999999988 556677998653 35566678888877 77888 66663
No 38
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.61 E-value=3.1e-07 Score=85.23 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=98.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.-||.|-|.+|++|+.+.+...+. +..+|+.+.+.+.|.. -.++|+|++++|++++ ..+|+.+.|-
T Consensus 8 ~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~V 73 (293)
T COG0074 8 DTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFV 73 (293)
T ss_pred CCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEec
Confidence 358999999999999999999987 9999999988654432 3468999999999985 6899999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 164 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N 164 (303)
+|..+.+.+..|+++|+++|+.-| |....+.-++.+.+++.++. ++.||
T Consensus 74 p~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~-iiGPn 123 (293)
T COG0074 74 PPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTR-LIGPN 123 (293)
T ss_pred CcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCE-EECCC
Confidence 999999999999999998887766 88888888899999998854 66777
No 39
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=98.59 E-value=1.1e-06 Score=82.72 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=95.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.-||.|.|.+|++|+.+.+.+... ++.+++.+.+... . . .-.|+|.|.+++++-+. .++|++|-+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~~-~--~------~v~G~~~y~sv~dlp~~----~~~Dlavi~v 71 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGKG-G--T------TVLGLPVFDSVKEAVEE----TGANASVIFV 71 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCCC-c--c------eecCeeccCCHHHHhhc----cCCCEEEEec
Confidence 468999999999999999988755 5668888876421 1 1 23588999999998741 1389999999
Q ss_pred CchhHHHHHHHHHHcCCCeE-EeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vV-igTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+++.+.+.++.|.+.|++.+ |-|.||.+...++|.+.|++.|+. ++.|| ++|+
T Consensus 72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gir-ilGPN-c~Gi 125 (286)
T TIGR01019 72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTR-LIGPN-CPGI 125 (286)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CceE
Confidence 99999999999999997554 667799877668899999999988 67888 5666
No 40
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.58 E-value=1.3e-06 Score=82.45 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=93.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC--ccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~DVvID 112 (303)
+-||.|.|.+|++|+.+.+.+.+. +++.+..+.+.. +. . .-.|++.|.+++++-+ . +|++|-
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~~--~------~v~G~~~y~sv~dlp~------~~~~DlAvi 71 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-GG--T------TVLGLPVFNTVAEAVE------ATGANASVI 71 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-CC--C------eEeCeeccCCHHHHhh------ccCCCEEEE
Confidence 468999999999999999998864 444565566541 01 1 2357899999999973 4 899999
Q ss_pred cCCchhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~v-VigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+.+++.+.+.++.|.+.|++. ||=|.||..++.++|.++|++.|++ ++.|| ++|+
T Consensus 72 ~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir-vlGPN-c~Gi 127 (291)
T PRK05678 72 YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR-LIGPN-CPGI 127 (291)
T ss_pred EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CCcc
Confidence 999999999999999999766 5667799876567899999999988 77898 5576
No 41
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=5e-07 Score=85.75 Aligned_cols=208 Identities=19% Similarity=0.137 Sum_probs=118.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCC-------CCcc--hhhhhcC---------CCCCCeeecCCHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHS-------VGED--IGMVCDM---------EQPLEIPVMSDLT 95 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~-------~g~d--~~~~~g~---------~~~~gv~v~~dl~ 95 (303)
|+||+|+|+ ||+||.+++++.+++ ++|+||+-|... .-.| -+.+.+. ....+++++.+.+
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 589999998 999999999999998 799999988210 0000 0111100 0123567766655
Q ss_pred -HHHhccccCCCccEEEEcCCchhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHH-----HHHHhhhcCCeEEEcCCCcH
Q 022057 96 -MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHIQLETVSA-----LSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 96 -~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g--~~vVigTTG~~~e~~~~-----L~~~a~~~~i~vv~a~N~Si 167 (303)
+.|.- .+...|+|||+|.--...+.....++.| +.|+++-++-++ ... ..+.-+. +-. +-+|-|=
T Consensus 80 p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~--~~~vv~gvn~~~~~~-~~~--iVsnaSC 152 (335)
T COG0057 80 PANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDD--VATVVYGVNHNYYDA-GHT--IVSNASC 152 (335)
T ss_pred hHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCC--ccEEEEeccccccCC-CCc--EEEEccc
Confidence 55532 1235789999998777888888777776 777787665431 011 0011010 112 2366677
Q ss_pred HHHHHHHHHHHhccCCCcEE---EEEccC----C-CCCCCcHHHHHHHHHHHhcCcccccCcccccccccCcccc--CCc
Q 022057 168 GSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDG 237 (303)
Q Consensus 168 Gv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~--~~~ 237 (303)
--|=|-.+++.+.+. |.|| +.=.|. + -+|.|+-- ++=++++....-+ .. ++....=+-++. ++.
T Consensus 153 TTNcLap~~kvl~d~-fGI~~g~mTtVh~~T~dQ~~~dgph~~-~rr~raa~~niIp-~s---TgaAkav~~VlP~L~gK 226 (335)
T COG0057 153 TTNCLAPVAKVLNDA-FGIEKGLMTTVHAYTNDQKLVDGPHKD-LRRARAAALNIIP-TS---TGAAKAVGLVLPELKGK 226 (335)
T ss_pred hhhhhHHHHHHHHHh-cCeeEEEEEEEEcccCCCccccCcccc-hhhhccccCCCCc-CC---CcchhhhhhhCcccCCc
Confidence 777788888887654 4554 333373 3 58889655 4444443331100 00 000000011111 156
Q ss_pred eeEEEEEcCCCce-eEEEEE
Q 022057 238 VRVHSMVLPGLPS-STTVYF 256 (303)
Q Consensus 238 i~ihS~R~g~ivg-~H~V~f 256 (303)
+.-+|+|.|..-+ -|.+.+
T Consensus 227 l~g~A~RVPt~~vs~~dl~v 246 (335)
T COG0057 227 LTGMAIRVPTPNVSVVDLTV 246 (335)
T ss_pred eeeEEEEecCCCcEEEEEEE
Confidence 8889999998866 455443
No 42
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.50 E-value=1e-06 Score=85.46 Aligned_cols=132 Identities=18% Similarity=0.164 Sum_probs=88.9
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cC---CHHHHHhccccCCCccEE
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSKARAVV 110 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~---dl~~~l~~~~~~~~~DVv 110 (303)
|.|+|+ |.||+.+++.+.+..+.+-+.+.|++. ..+..++.......+.. .. ++++++ .+.|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~------~~~dvV 71 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELL------RGCDVV 71 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHH------TTSSEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHH------hcCCEE
Confidence 789999 999999999999888874444566542 22222221000112211 12 345566 468999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH-HHH-HHHHHHhc
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS-ILL-QQAAISAS 180 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv-~ll-~~~a~~~~ 180 (303)
|++..|......++.|+++|+|.|- |.+-.++..++.+.++++|+.++.+.-|..|. |+| .++++.+.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence 9999999889999999999999997 55434567889999999999999999999999 444 66677776
No 43
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.46 E-value=1.5e-06 Score=83.07 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=94.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhc---------CCcEEEEEEecCC--C-CcchhhhhcCCCCCCeeecCCH-----HH
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS--V-GEDIGMVCDMEQPLEIPVMSDL-----TM 96 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~--~-g~d~~~~~g~~~~~gv~v~~dl-----~~ 96 (303)
|++||+|+|. |.+|+.+++.+.++ .+++++++.+++. . +.+... . -...++. .+
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~ 72 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLN-------A-EVWTTDGALSLGDE 72 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccc-------h-hhheecccccccHh
Confidence 4699999997 99999999998874 3678899998742 1 111110 0 1112333 44
Q ss_pred HHhccccCCCccEEEEcCCc--hhH--HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057 97 VLGSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p--~a~--~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll 172 (303)
++.. .+.|++|+.+.. +.. .++++.++++|+|||..--+.-.....+|.++|+++|+.+.|=++-.=|+-++
T Consensus 73 ~~~~----~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI 148 (333)
T COG0460 73 VLLD----EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPII 148 (333)
T ss_pred hhcc----ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchH
Confidence 4432 688999997643 333 49999999999999965556555678999999999999999988877777655
Q ss_pred HHHHHHhc
Q 022057 173 QQAAISAS 180 (303)
Q Consensus 173 ~~~a~~~~ 180 (303)
.-+-..++
T Consensus 149 ~~lr~~l~ 156 (333)
T COG0460 149 KLLRELLA 156 (333)
T ss_pred HHHHhhcc
Confidence 44444443
No 44
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.40 E-value=2.8e-06 Score=69.43 Aligned_cols=109 Identities=20% Similarity=0.310 Sum_probs=76.6
Q ss_pred eEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 37 kV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
+|+|+|++ ++.|..+.+.+.+ .++++..+ ++.. ++ -.|.++|.++++ .. ..+|+++-|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e-~p-----~~iDlavv~ 62 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAE-IP-----EPIDLAVVC 62 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence 69999976 8899999999987 77888764 4431 21 246789999998 33 589999999
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
++|+...+.++.|.+.|+.-|+-.+|- ..+++.+++++.|++ ++.|| ++|+
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~-vigp~-C~gv 113 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIR-VIGPN-CLGV 113 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-E-EEESS--HHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCE-EEeCC-cceE
Confidence 999999999999999999999988883 235688889998888 44555 6665
No 45
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.38 E-value=2.7e-06 Score=66.99 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=71.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
+-||+|+|+ |++|+.++.......++++++++|.+. .+.++ .-.++|+|.+++++.+. .++|+.|-+.
T Consensus 3 ~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~-----~i~gipV~~~~~~l~~~----~~i~iaii~V 70 (96)
T PF02629_consen 3 KTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGK-----EIGGIPVYGSMDELEEF----IEIDIAIITV 70 (96)
T ss_dssp TEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTS-----EETTEEEESSHHHHHHH----CTTSEEEEES
T ss_pred CCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCc-----EECCEEeeccHHHhhhh----hCCCEEEEEc
Confidence 478999998 999999887677788999999999653 22222 23479999999999864 2499999999
Q ss_pred CchhHHHHHHHHHHcCCCeEEe
Q 022057 115 DASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vVig 136 (303)
+++.+.+.+..++++|+..|+-
T Consensus 71 P~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999887753
No 46
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.38 E-value=2.7e-06 Score=73.10 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=76.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|+||+++|. |+||+.+++.+. ..+++|. ++|++. .....+. ..++...+|++++.+ .+|+|+-+-
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence 689999997 999999999987 4688876 578642 2233333 346888899999985 689998765
Q ss_pred C-chhHHHHHHH--HHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 115 D-ASTVYDNVKQ--ATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 115 ~-p~a~~~~~~~--al~--~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
+ ++++.+.+.. .+. ..-.+++-++..++++..++.+.+++.|+..+=+|
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 4 4556666554 333 22345666677778888899998888887766555
No 47
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.30 E-value=3.8e-06 Score=80.99 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=70.2
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCC------C-CCCeeec-CCHHHHHhccccC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME------Q-PLEIPVM-SDLTMVLGSISQS 104 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~------~-~~gv~v~-~dl~~~l~~~~~~ 104 (303)
||+||+|+|++|.+|+.+++.+..+|+++|+++ .+....|++...+.+.. . .....+. .+.+++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 74 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV------- 74 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-------
Confidence 469999999999999999999999999999998 44444555554322110 0 0112221 234433
Q ss_pred CCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
.++|+|+++++.+...++++.+.++|+.+|.-+.
T Consensus 75 ~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 75 DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence 3799999888888889999999999999887554
No 48
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.28 E-value=1.1e-05 Score=73.18 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=75.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
++||+|+|+ |+||+.++..+.+.. +.+-+.+++++. ......+. ..+++.++.|++++++ ++|+||-
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii 72 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL 72 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence 479999998 999999999887653 344233344321 12223333 2456777888888884 7999999
Q ss_pred cCCchhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 113 fT~p~a~~~~~~~al~--~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
.++|..+.+.+..... .+..+|.-+-|++.+.+ ++.......-+..-||+..-+
T Consensus 73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l---~~~~~~~~~v~r~~Pn~a~~v 128 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYL---EERLPKGTPVAWIMPNTAAEI 128 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHH---HHHcCCCCeEEEECCcHHHHH
Confidence 9999988888776543 24434444448887654 443322111223447776554
No 49
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.28 E-value=5.8e-06 Score=76.08 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=68.9
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
||+||+|+|+ |.||+.++..+.+.. ...-+.+++++. .....+. ..+++.+..+.++++ .++|+||-
T Consensus 1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~------~~advVil 68 (267)
T PRK11880 1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAA------QEADVVVL 68 (267)
T ss_pred CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHH------hcCCEEEE
Confidence 6889999998 999999999887542 123455677642 2222222 234666777888877 47899999
Q ss_pred cCCchhHHHHHHHHHHc-CCCeEEeCCCCCHHHHH
Q 022057 113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS 146 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~-g~~vVigTTG~~~e~~~ 146 (303)
++.|..+.+.++.+..+ +..+|.-+.|.+.++++
T Consensus 69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~ 103 (267)
T PRK11880 69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE 103 (267)
T ss_pred EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence 99998888888776554 44455545578765544
No 50
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.25 E-value=1.4e-05 Score=74.69 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=77.7
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|++||+|+|+ |.||+.+++.+.+ .++++. ++|++. .....+. ..++...+++++++ .++|+||.+
T Consensus 1 ~~~~IgviG~-G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~------~~~d~vi~~ 65 (296)
T PRK11559 1 MTMKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVA------EQCDVIITM 65 (296)
T ss_pred CCceEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHH------hcCCEEEEe
Confidence 5689999997 9999999998874 678876 477642 2222222 34566778888887 379999987
Q ss_pred CCchhHHHHHH-------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057 114 TDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 114 T~p~a~~~~~~-------~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
.++....+.+. ..++.|. +|+-++..++...+++.+.+++.++.++-+|=+
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~ 123 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGIEMLDAPVS 123 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence 76544433331 2223344 444455556667778888887778887777744
No 51
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.24 E-value=4.5e-06 Score=80.03 Aligned_cols=133 Identities=18% Similarity=0.113 Sum_probs=84.2
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC------------CCCCCeeecCCHHHHHhccccC
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM------------EQPLEIPVMSDLTMVLGSISQS 104 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~~g~------------~~~~gv~v~~dl~~~l~~~~~~ 104 (303)
|||+|+ |++|+.+++.+.++++++||++.|.+.. ...+....|. ..+.++.+..++++++
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl------ 73 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLL------ 73 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHh------
Confidence 689998 9999999999988899999999985320 0011111110 0123466778899998
Q ss_pred CCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCCCCHHHH-----HHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057 105 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETV-----SALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (303)
Q Consensus 105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG~~~e~~-----~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~ 178 (303)
.++|+|+++|....+..+....++.|.. +++|-+.-+..+. ---.++. +-. +-+|-|=--|=|..+++.
T Consensus 74 ~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~---~~~--~vs~aSCtTn~Lap~~~~ 148 (333)
T TIGR01546 74 EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAAL---GKD--YVRVVSCNTTGLVRTLNA 148 (333)
T ss_pred hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcC---cCc--eEEecCchHhhHHHHHHH
Confidence 3799999999888889999999999865 4555442110000 0001111 112 335556666767777776
Q ss_pred hccC
Q 022057 179 ASFH 182 (303)
Q Consensus 179 ~~~~ 182 (303)
+.+.
T Consensus 149 L~~~ 152 (333)
T TIGR01546 149 INDY 152 (333)
T ss_pred HHHh
Confidence 6543
No 52
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.24 E-value=1.4e-05 Score=85.20 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=95.7
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCC-----CCcchhhhhcCCCC-CCeeecCCHHHHHh
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----VGEDIGMVCDMEQP-LEIPVMSDLTMVLG 99 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~-----~g~d~~~~~g~~~~-~gv~v~~dl~~~l~ 99 (303)
++++|+|+|+ |.+|+.+++.+.++. +++++++.++.. .|-+...+...... ...+-.+++-+.+.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK 542 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence 5799999998 999999999986543 577889887531 12232222110000 00000112222332
Q ss_pred ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCH---HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~---e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a 176 (303)
. .....||+||+|.-+....+...++++|+|||...-+.-. ++.++|.++|+++++.+.|-++..=|.-++.-+-
T Consensus 543 ~--~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~ 620 (819)
T PRK09436 543 E--YHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ 620 (819)
T ss_pred h--cCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence 1 0114599999998777777788999999999977654322 6889999999999999999998888887766654
Q ss_pred HHh
Q 022057 177 ISA 179 (303)
Q Consensus 177 ~~~ 179 (303)
..+
T Consensus 621 ~~~ 623 (819)
T PRK09436 621 NLL 623 (819)
T ss_pred HHH
Confidence 444
No 53
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.21 E-value=7.1e-06 Score=78.89 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=67.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc------CCC-CCCeeecCCHH-HHHhccccCCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD------MEQ-PLEIPVMSDLT-MVLGSISQSKA 106 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g------~~~-~~gv~v~~dl~-~~l~~~~~~~~ 106 (303)
|||+|+|++|.||+.+++.+.++++++|++++++. ..|++..+... ... -....+ .+++ +.+ .+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~ 73 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPI-VEPEPVAS------KD 73 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEE-EeCCHHHh------cc
Confidence 58999999999999999999989999999998753 34555543321 100 011111 1222 222 47
Q ss_pred ccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVig 136 (303)
+|+|+.++++..+.++...++++|+.+|.=
T Consensus 74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VIDl 103 (341)
T TIGR00978 74 VDIVFSALPSEVAEEVEPKLAEAGKPVFSN 103 (341)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHCCCEEEEC
Confidence 999999998898999999999999998863
No 54
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.20 E-value=1e-05 Score=78.09 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=69.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CCCCCCeeec-CCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVM-SDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g-~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvID 112 (303)
|||+|+|+||.+|+.+++.+.++|+++|+++++++ ..|+...+..+ +....+..+. .+.++++ .++|+++-
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIA------EDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhh------cCCCEEEE
Confidence 58999999999999999999999999999887653 24554433221 0000011121 1445554 36999997
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~ 140 (303)
+++.+.+.+.+..++++|++||-=++.|
T Consensus 75 alP~~~s~~~~~~~~~~G~~VIDlS~~f 102 (346)
T TIGR01850 75 ALPHGVSAELAPELLAAGVKVIDLSADF 102 (346)
T ss_pred CCCchHHHHHHHHHHhCCCEEEeCChhh
Confidence 7777888999999999999888655543
No 55
>PLN02700 homoserine dehydrogenase family protein
Probab=98.20 E-value=1.8e-05 Score=77.04 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=89.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCC---------CCcchhhhhc---C-CCCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS---------VGEDIGMVCD---M-EQPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~---------~g~d~~~~~g---~-~~~~gv~v~-- 91 (303)
+++|+|+|+ |.+|+.+++.+.++. ++.++++.|+.. .|-|...+.. . ........+
T Consensus 3 ~i~i~liG~-G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 3 KIPVLLLGC-GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred EEEEEEEec-ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 489999997 999999999876543 367888888531 1333322221 0 001111001
Q ss_pred -----------------CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 022057 92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (303)
Q Consensus 92 -----------------~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~ 154 (303)
.+..+.+.. ...+|+||+|......++.+.++++|+|||...-+......+++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~- 156 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA- 156 (377)
T ss_pred ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence 122232311 3469999999888888999999999999997655433334455666665
Q ss_pred cCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057 155 ASMGCLIAPTLSIGSILLQQAAISA 179 (303)
Q Consensus 155 ~~i~vv~a~N~SiGv~ll~~~a~~~ 179 (303)
+++.+.|-+|..-|.-++.-+-..+
T Consensus 157 ~~~~~~yEatVgaGlPiI~tl~~ll 181 (377)
T PLN02700 157 HPRRIRHESTVGAGLPVIASLNRIL 181 (377)
T ss_pred cCCeEEEEeeeeeccchHHHHHHHh
Confidence 5899999998888877665554443
No 56
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.16 E-value=2.3e-05 Score=83.24 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=91.9
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeecCCHH---H
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLT---M 96 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~~~~~g~~~~~gv~v~~dl~---~ 96 (303)
++++|+|+|+ |.+|+.+++.+.++. +++++++.+++. .|-+...+....... ....+++ +
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~--~~~~~~~~~~e 533 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDE--AVEWDEESLFL 533 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhh--cCCccHHHHHH
Confidence 4699999998 999999999886542 578899998632 122333222100000 0111233 3
Q ss_pred HHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC---CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~---~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll 172 (303)
.+.. ...+.+|+||+|..+....+...++++|+|||...-.. ..+..++|.++++++|+.+.|-++..=|+-++
T Consensus 534 ~i~~--~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii 610 (810)
T PRK09466 534 WLRA--HPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPIN 610 (810)
T ss_pred HHhh--cCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChH
Confidence 3321 01123699999988777778889999999999776532 34688999999999999999999988888764
No 57
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=98.11 E-value=8.6e-06 Score=78.22 Aligned_cols=152 Identities=18% Similarity=0.085 Sum_probs=90.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh--hcCC---CCCCeeec--C
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV--CDME---QPLEIPVM--S 92 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~--~g~~---~~~gv~v~--~ 92 (303)
|++||+|+|+ |||||.+.+.+.++++++|+++.|+.. .|+--+++ .|.. ....+.++ .
T Consensus 1 m~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 4689999999 999999999999889999999998310 01100001 0000 00123332 2
Q ss_pred CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC------------CCCHHHHHHHHHHhhhcCCeEE
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP------------HIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT------------G~~~e~~~~L~~~a~~~~i~vv 160 (303)
+++++- + .++|+|+++|-.....+.+...++.|...|+=+. |.+++ .+.. +. -.++
T Consensus 80 ~~~~~~----w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~---~~~~--~~--~~II 147 (334)
T PRK08955 80 AIADTD----W-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDH---LFDP--AI--HPIV 147 (334)
T ss_pred ChhhCC----c-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHH---Hhcc--cC--CCEE
Confidence 455442 2 3899999999999899999999999976665432 22222 2221 11 2444
Q ss_pred EcCCCcHHHHHHHHHHHHhccCC--CcEEEEEccC--C---CCCCCc
Q 022057 161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP--N---ARDFPS 200 (303)
Q Consensus 161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh--~---K~DaPS 200 (303)
+|=|=-.|-|.-+++.+.+.+ ...-+.-.|. + -.|.|+
T Consensus 148 --SnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~ 192 (334)
T PRK08955 148 --TAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH 192 (334)
T ss_pred --ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC
Confidence 555555665666666654332 2333444574 2 357775
No 58
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=98.09 E-value=9.8e-06 Score=69.42 Aligned_cols=34 Identities=38% Similarity=0.419 Sum_probs=31.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
|||+|+|+ ||+||.+++.+..++++||+++-|..
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEeccc
Confidence 69999998 99999999999999999999998853
No 59
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.04 E-value=3.9e-05 Score=70.54 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=72.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|||+++|+ |+||+.+++.+.+.. ..+.+.+.+++. ..+.++. ..+ ++.++++.+++++ ++|+|+-.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~--~~~~~l~---~~~~~~~~~~~~~~~~~------~aDvVila 68 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA--QIAARLA---ERFPKVRIAKDNQAVVD------RSDVVFLA 68 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH--HHHHHHH---HHcCCceEeCCHHHHHH------hCCEEEEE
Confidence 48999998 999999999987542 222345555532 2223333 123 4667788888874 68999999
Q ss_pred CCchhHHHHHHHH-HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 114 T~p~a~~~~~~~a-l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
+.|+...+.+... +..+..+|.-..|.+.++++.+ .......+...||...
T Consensus 69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~---~~~~~~~~r~~P~~~~ 120 (258)
T PRK06476 69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW---IGHDVKLVRAIPLPFV 120 (258)
T ss_pred eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH---hCCCCCEEEECCCChh
Confidence 9988887777543 2345555554447777665544 3332234445565433
No 60
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.03 E-value=2.3e-05 Score=71.37 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=96.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.||.+-|++||-|..+.+... +-+..+||.+++.+.|. .-+|.|+|.+..|+.++ .++|.-+.|-+
T Consensus 39 TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyVP 104 (329)
T KOG1255|consen 39 TKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYVP 104 (329)
T ss_pred ceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEeC
Confidence 589999999999999999777 46889999998865443 35788999999999875 78999888999
Q ss_pred chhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057 116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 116 p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
|......+..++++-+|+++.-| |..+.+.-++...-....-.-++.||-
T Consensus 105 pp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNC 155 (329)
T KOG1255|consen 105 PPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNC 155 (329)
T ss_pred ChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCC
Confidence 99999999999999999998877 888877777776655545566888884
No 61
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.01 E-value=3.7e-05 Score=65.68 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=30.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|||+|+|+ |+||+.+++.+.+.++++|+++.|.
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence 58999998 9999999999998899999999984
No 62
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.01 E-value=7.2e-05 Score=74.56 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=86.7
Q ss_pred ceeEEEEcCC---cHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057 35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (303)
+-+|+|+|++ |++|+.+.+.+.+ .++ ++. .+++.. .+ -.|+++|.+++++- ..+|+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~-~Vnp~~-----~~------i~G~~~~~sl~~lp------~~~Dl 67 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIY-PVNPKA-----GE------ILGVKAYPSVLEIP------DPVDL 67 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEE-EECCCC-----Cc------cCCccccCCHHHCC------CCCCE
Confidence 3579999997 7899999999885 344 453 354431 11 35789999999984 47999
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeE-EeCCCCCH------HHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vV-igTTG~~~------e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+|-+++|+.+.+.++.|.+.|+..+ +-|.||.+ +..++|.++|+++|+. ++.|| ++|+
T Consensus 68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir-vlGPn-c~G~ 132 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR-LLGPN-CLGI 132 (447)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE-EEecC-eeeE
Confidence 9999999999999999999998655 55668764 2247899999999988 56677 4555
No 63
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.00 E-value=3.7e-05 Score=59.64 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=61.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEEEc
Q 022057 37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDf 113 (303)
||+++|+ |+||+.+++.+.+.. ..++.-+.+++. +.+.++. ..+++.++. +..++++ .+|++|-+
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila 68 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELA---KEYGVQATADDNEEAAQ------EADVVILA 68 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence 7999997 999999999987542 267775556542 3334443 356666655 7888884 79999999
Q ss_pred CCchhHHHHHHHH--HHcCCCeEE
Q 022057 114 TDASTVYDNVKQA--TAFGMRSVV 135 (303)
Q Consensus 114 T~p~a~~~~~~~a--l~~g~~vVi 135 (303)
..|....+.+... ...++-+|.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 9999988888765 556666654
No 64
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.00 E-value=3.4e-05 Score=69.25 Aligned_cols=92 Identities=24% Similarity=0.383 Sum_probs=66.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI 111 (303)
..||+|+|+ |.+|+.+++.+. ...+++++|++|.+. ...+... .++++ ++++++++.+ .++|++|
T Consensus 84 ~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i-----~g~~v~~~~~l~~li~~----~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKI-----GGIPVYHIDELEEVVKE----NDIEIGI 151 (213)
T ss_pred CcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEe-----CCeEEcCHHHHHHHHHH----CCCCEEE
Confidence 579999998 999999998643 457899999999642 1111111 12333 4577888763 5799999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEE-eCC
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVV-YVP 138 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVi-gTT 138 (303)
.++++..+.+....++++|+..|. .++
T Consensus 152 Ia~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 152 LTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred EeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 888888889999999999965554 454
No 65
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.97 E-value=7.3e-05 Score=71.72 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=63.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvI 111 (303)
|+||+|+|++|..|+.+++.+.+ .|.++|+++......|+... +.+ ..+.+. +++ ..+ .++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~g----~~i~v~-d~~~~~~------~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FKG----KELKVE-DLTTFDF------SGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eCC----ceeEEe-eCCHHHH------cCCCEEE
Confidence 57999999999999999999987 68889999776544444432 111 123332 222 223 3799999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeE
Q 022057 112 DFTDASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vV 134 (303)
.++......+.+..++++|+.||
T Consensus 69 ~A~g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred ECCChHHHHHHHHHHHhCCCEEE
Confidence 77777778999999999998544
No 66
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.97 E-value=0.00012 Score=69.04 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=73.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||+++|+ |+||+.+++.+.+ .+++|+ ++|++. .....+. ..|+..+.+++++.+.. ..+|+||-+.+
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~~---~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSKL---EAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHhC---CCCCEEEEEec
Confidence 48999997 9999999999875 678877 578652 2222222 35677788999887520 23799988877
Q ss_pred ch-hHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 116 AS-TVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 116 p~-a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
++ .+.+.+...... .-.+|+-++..+++...++.+..++.++..+
T Consensus 69 ~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred CchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 66 445554443322 1246666655555556666666666676644
No 67
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.96 E-value=5.2e-05 Score=61.73 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=62.4
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEEEcC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvIDfT 114 (303)
||+|+|++|.+|+.+++.+.+.++++++++++++ ..|+++....+ +..-.++.+++ +.++. .++|+|+.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence 6899998899999999999988999999997753 23444433211 11101111221 11111 4789999888
Q ss_pred CchhHHHHH---HHHHHcCCCeEEeCCCC
Q 022057 115 DASTVYDNV---KQATAFGMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~---~~al~~g~~vVigTTG~ 140 (303)
+++.+.+.+ ..+++.|+.+|--++-+
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 888888854 44557888777444433
No 68
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.94 E-value=3.9e-05 Score=72.96 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=77.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeecCCHHHHHhccccC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQS 104 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----------g~~~~~gv~v~~dl~~~l~~~~~~ 104 (303)
+|||+|+|+ |.||..++..+.. .++++. +++++. .....+. |......+..++++++++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~-~G~~V~-~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------ 72 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAAS-KGVPVR-LWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEAL------ 72 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------
Confidence 469999998 9999999998874 467765 466531 1111111 100001144567888876
Q ss_pred CCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHH--HHHHHHHhhh---cCCeEEEcCCCcHH
Q 022057 105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIG 168 (303)
Q Consensus 105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~--~~~L~~~a~~---~~i~vv~a~N~SiG 168 (303)
.++|+||-+..+..+.+.+. .++.+..+|.-++|++.++ ...+.+...+ .++.++-.||++--
T Consensus 73 ~~aD~Vi~~v~~~~~~~v~~-~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 73 AGADFAVVAVPSKALRETLA-GLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred cCCCEEEEECchHHHHHHHH-hcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 47899997777776655553 3456677777788876443 4455555544 56777888887665
No 69
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.92 E-value=0.00019 Score=67.55 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=75.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||+++|+ |.||+.+++.+.+ .+++|+ ++|++. .....+. +.|+.+.++++++.+.. ..+|+||-+.+
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP 68 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence 48999997 9999999999885 578875 477652 2222232 35677788899887520 14798887665
Q ss_pred ch-hHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 116 AS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 116 p~-a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
+. .+.+.+... ++.|.-+|..+|+. ++...++.+.+++.|+..+=+|...
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~g~~~~dapvsG 122 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEKGIHFVDVGTSG 122 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHcCCEEEeCCCCc
Confidence 54 444444333 33443344444444 4455667777778888877666654
No 70
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.87 E-value=5.1e-05 Score=73.01 Aligned_cols=197 Identities=17% Similarity=0.102 Sum_probs=105.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh---hcC--C-CCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV---CDM--E-QPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~-~~---~g~--~-~~~gv~v~-- 91 (303)
++||||+|+ ||||+.+++.+.+.++++|+++.|+.. .|+--+ ++ .|. . ....+.++
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 689999998 999999999998889999999998421 011000 00 000 0 00012222
Q ss_pred CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC----------CCCCHHHHHHHHHHhhhcCCeEEE
Q 022057 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV----------PHIQLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT----------TG~~~e~~~~L~~~a~~~~i~vv~ 161 (303)
.|++++-= .+.++|+|+++|-.....+.+...+++|...|+=+ +|.+.++++ .+ -.++
T Consensus 84 ~~p~~~~w---~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~------~~--~~II- 151 (338)
T PLN02358 84 RNPEDIPW---GEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK------SD--LDIV- 151 (338)
T ss_pred CCcccCcc---cccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhC------CC--CCEE-
Confidence 23333210 01479999999999999999999999997555433 244444322 12 2444
Q ss_pred cCCCcHHHHHHHHHHHHhccCC--CcEEEEEccC----C-CCCCCcHHHHHHHHHHHhc--CcccccCcccccccccCcc
Q 022057 162 APTLSIGSILLQQAAISASFHY--KNVEIVESRP----N-ARDFPSPDATQIANNLSNL--GQIYNREDISTDVKARGQV 232 (303)
Q Consensus 162 a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh----~-K~DaPSGTA~~l~~~i~~~--~~~~~r~~~~~~~~~rg~~ 232 (303)
+|=|=-.|-|.-+++.+.+.+ ...-+.-.|. + -.|.|+..-.+-+..++.. +.. .+... .-+.+
T Consensus 152 -SnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~---tGaak---a~~kI 224 (338)
T PLN02358 152 -SNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAK---AVGKV 224 (338)
T ss_pred -ECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCC---cchhh---hhhhc
Confidence 455555555555555554322 2233444463 2 3577764333222222220 110 00000 00111
Q ss_pred cc--CCceeEEEEEcCCCcee
Q 022057 233 LG--EDGVRVHSMVLPGLPSS 251 (303)
Q Consensus 233 ~~--~~~i~ihS~R~g~ivg~ 251 (303)
+. +..+..+++|.|-..|+
T Consensus 225 lP~l~gkl~g~avRVPv~~gs 245 (338)
T PLN02358 225 LPSLNGKLTGMSFRVPTVDVS 245 (338)
T ss_pred cccCCCcEEEEEEEeeEcCee
Confidence 11 14588999999987763
No 71
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.85 E-value=5.3e-05 Score=72.80 Aligned_cols=100 Identities=21% Similarity=0.198 Sum_probs=66.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhhh--c--C-CCCCCeeec--C
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMVC--D--M-EQPLEIPVM--S 92 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~~--g--~-~~~~gv~v~--~ 92 (303)
|++||+|+|+ ||+||.+.+.+.+.+++|+|++-|+. . .|+--+++. + + .....++++ .
T Consensus 1 m~~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 1 MVVKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK 79 (337)
T ss_pred CceEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence 6689999998 99999999998878899999986621 0 011000000 0 0 001123333 3
Q ss_pred CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
|++++-= .+.++|+|+++|......+.+..++++|...|+=+
T Consensus 80 dp~~lpW---~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS 121 (337)
T PTZ00023 80 DPAAIPW---GKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS 121 (337)
T ss_pred ChhhCCc---cccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence 4554421 12479999999988888999999999997777654
No 72
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.85 E-value=0.00023 Score=66.24 Aligned_cols=115 Identities=11% Similarity=0.169 Sum_probs=74.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|||+++|+ |+||+.+++.+.+.. ..+++ +++++. ...+..+. ..+++.++.+..+++ .++|+||-
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~------~~aDvVil 71 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---QKYGVKGTHNKKELL------TDANILFL 71 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---HhcCceEeCCHHHHH------hcCCEEEE
Confidence 59999998 999999999988653 24444 466532 11122232 245677778888876 47899998
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEe-CCCCCHHHHHHHHHHhhhcCCeEEEc-CCCc
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVY-VPHIQLETVSALSAFCDKASMGCLIA-PTLS 166 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVig-TTG~~~e~~~~L~~~a~~~~i~vv~a-~N~S 166 (303)
+..|....+.+...... .-.+|+- ..|.+.+++.++ .. .+.|++.+ ||+.
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~---~~-~~~~v~r~mPn~~ 125 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL---LQ-KDVPIIRAMPNTS 125 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cC-CCCeEEEECCCHH
Confidence 88898887777655432 2235555 478887765543 32 23566655 6655
No 73
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.84 E-value=9.9e-05 Score=70.36 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=61.1
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
||+||+|+|++|-.|+.+++.+.++|.++|+....+.. .+. .+.++.+ .++|+++-+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~------~~~DvvFla 57 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELL------NAADVAILC 57 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhh------cCCCEEEEC
Confidence 78999999999999999999999999999998875431 111 1123333 368999866
Q ss_pred CCchhHHHHHHHHHHcCCCeEE
Q 022057 114 TDASTVYDNVKQATAFGMRSVV 135 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVi 135 (303)
.+.+...+.+..+.+.|+.||-
T Consensus 58 lp~~~s~~~~~~~~~~g~~VID 79 (313)
T PRK11863 58 LPDDAAREAVALIDNPATRVID 79 (313)
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 6667779999999899997663
No 74
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.83 E-value=0.00013 Score=70.19 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=79.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV 110 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVv 110 (303)
+|+||+|+|+||..|+.+++.+. ..|..+|+.+.+....|+.+. +.+ ....+.. +.++ + .++|++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~------~~vD~v 70 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-F------SQVQLA 70 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-h------cCCCEE
Confidence 45899999999999999999998 579999998877655554433 111 1122211 2222 3 379999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeC------------CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYV------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigT------------TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l 171 (303)
+-+++++...+.+..+.++|+.+|-=+ |.++.++ |..+- + ..++-.||=+.-..+
T Consensus 71 Fla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~---i~~~~-~--~~iIAnPgC~~t~~~ 137 (336)
T PRK05671 71 FFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAER---LASLA-A--PFLVSSPSASAVALA 137 (336)
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHH---Hcccc-C--CCEEECCCcHHHHHH
Confidence 867777778889999999999877332 3334433 32221 2 367888887666544
No 75
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.83 E-value=9.6e-05 Score=69.54 Aligned_cols=121 Identities=19% Similarity=0.235 Sum_probs=70.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC----------CCCCCeeecCCHHHHHhccccC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----------EQPLEIPVMSDLTMVLGSISQS 104 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~----------~~~~gv~v~~dl~~~l~~~~~~ 104 (303)
||||+|+|+ |.||..++..+.+ .+.++ .+++++. .....+... ....++...+++++++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~-~g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 69 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLAR-NGHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL------ 69 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH------
Confidence 579999998 9999999998875 56775 4566531 111111100 0011455667888776
Q ss_pred CCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhh-----cCCeEEEcCCCc
Q 022057 105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS 166 (303)
Q Consensus 105 ~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~-----~~i~vv~a~N~S 166 (303)
.++|++|-++.+....+.+..... .+..+|.-+.|++.+....+.+..++ ....++..||+.
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~ 139 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA 139 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence 478999988877666665554443 34444444336654333223332222 135567778864
No 76
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.82 E-value=0.00027 Score=66.61 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=69.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||+++|+ |+||..+++.+.+ .+++++. +|++. .....+. +.++....+++++.+.+ ..+|+|+-+.+
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~~---~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQRL---SAPRVVWVMVP 68 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhhc---CCCCEEEEEcC
Confidence 48999998 9999999998874 6788865 77652 2222332 23444456777765321 36899998777
Q ss_pred chhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 116 ASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 116 p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
+..+.+.+... ++.|.-+|-.+|+... +..++.+.+++.|+..+=+|
T Consensus 69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYK-DSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCCcc-cHHHHHHHHHhcCCeEEecC
Confidence 76555555443 3455445555555433 33444444555666655433
No 77
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.79 E-value=0.00016 Score=66.42 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=72.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
|||+++|+ |.||..+++.+.+. ++ +++...+++. .....+. +.|+.+.++.++++ .++|+||
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~------~~aDvVi 66 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVV------KSSDVII 66 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHH------hcCCEEE
Confidence 68999997 99999999998854 33 6654336542 1222222 45777788888877 3789999
Q ss_pred EcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcH
Q 022057 112 DFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSI 167 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~Si 167 (303)
-+..|+.+.+.+..... .+.-+|.-+.|.+.++++ ++... .+++ ..||...
T Consensus 67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~~ 121 (266)
T PLN02688 67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTPC 121 (266)
T ss_pred EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcHH
Confidence 98888888877765433 343344333577765544 33322 1555 5677644
No 78
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.76 E-value=0.00018 Score=67.17 Aligned_cols=119 Identities=9% Similarity=0.064 Sum_probs=75.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
|+||+|+|+ |.||+.+++.+.+... .+++. ++++. ......+. ..+ ++.++.|.++++ .++|+|
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~-~~r~~-~~~~~~l~---~~~~~~~~~~~~~e~~------~~aDvV 68 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIIL-YSSSK-NEHFNQLY---DKYPTVELADNEAEIF------TKCDHS 68 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEE-EeCCc-HHHHHHHH---HHcCCeEEeCCHHHHH------hhCCEE
Confidence 579999998 9999999999876531 45654 44321 01112221 122 345567777776 478999
Q ss_pred EEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcHHHH
Q 022057 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI 170 (303)
Q Consensus 111 IDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~SiGv~ 170 (303)
|-+..|..+.+.+..+ +..++.+|+-.-|.+.++++++ ... .+++ .=||...-+.
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~---~~~--~~vvR~MPN~~~~~g 127 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TPG--LQVSRLIPSLTSAVG 127 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCC--CCEEEEeCccHHHHh
Confidence 9898999888877755 3456767766669988765553 322 2333 3377766553
No 79
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.76 E-value=0.00048 Score=67.09 Aligned_cols=121 Identities=11% Similarity=0.111 Sum_probs=76.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeecC--CHHHHHhccccCCCccE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV 109 (303)
|+||+|+|+||-.|+.+.+.+.++++++ |+. +.+...|.....+.| ....+.+ |.++ + .++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g----~~~~v~~~~~~~~-~------~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGG----KEGTLQDAFDIDA-L------KKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCC----CcceEEecCChhH-h------cCCCE
Confidence 5899999999999999999888899998 777 443322333322222 1123332 2333 3 36898
Q ss_pred EEEcCCchhHHHHHHHHHHcCCC-eEEeCC--------------CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057 110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP--------------HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~-vVigTT--------------G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l 171 (303)
++=+...+...+....+.++|++ +||--+ .+++++ |.. ..+.|+.++..||=+.-..+
T Consensus 69 vf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~---i~~-~~~~g~~iIanPnC~tt~~~ 141 (369)
T PRK06598 69 IITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDV---IDD-ALANGVKTFVGGNCTVSLML 141 (369)
T ss_pred EEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHH---HHh-hhhcCCCEEEcCChHHHHHH
Confidence 88444556668888999999985 454443 234443 433 32355567888887665543
No 80
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.76 E-value=8.3e-05 Score=71.34 Aligned_cols=100 Identities=25% Similarity=0.207 Sum_probs=65.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhhcCC-----CCCCeeec--CC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVCDME-----QPLEIPVM--SD 93 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~g~~-----~~~gv~v~--~d 93 (303)
|++||+|+|+ ||+||.+.+.+.+++++|+|++=|... .|+--+++.-.. ....+.++ .+
T Consensus 1 m~~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 1 MTIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 79 (331)
T ss_pred CceEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence 4589999998 999999999988788999999876210 011000000000 01123333 25
Q ss_pred HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
++++-= .+.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 80 p~~~~w---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (331)
T PRK15425 80 PANLKW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120 (331)
T ss_pred hhhCcc---cccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence 555321 01379999999988888999999999997766544
No 81
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00013 Score=69.93 Aligned_cols=98 Identities=16% Similarity=0.077 Sum_probs=69.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeec-CCHHHHHhccccCCCccEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVM-SDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~~gv~v~-~dl~~~l~~~~~~~~~DVvI 111 (303)
||+||+|+|++|-.|-.+.+.+..+|++|+..+..+...|+...+..--.. -...+.. -|.+++.. .++|||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF 75 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF 75 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence 689999999999999999999999999996655544435665544321000 0111111 13344322 4689999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEe
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVig 136 (303)
-+++.....+.+...++.|+.||=-
T Consensus 76 lalPhg~s~~~v~~l~~~g~~VIDL 100 (349)
T COG0002 76 LALPHGVSAELVPELLEAGCKVIDL 100 (349)
T ss_pred EecCchhHHHHHHHHHhCCCeEEEC
Confidence 8888889999999999999996643
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.75 E-value=0.00022 Score=60.94 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=73.8
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-C-------CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-V-------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~-------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D 108 (303)
||+|+|+ |.||.+++..+..+ +.++. .+.++. . +.....+.+..-+..+.+++|+++++ .++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~-g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~------~~ad 71 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADN-GHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL------EDAD 71 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHC-TEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH------TT-S
T ss_pred CEEEECc-CHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh------Cccc
Confidence 7999998 99999999988754 45544 344321 0 00000111111123566789999998 4799
Q ss_pred EEEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHH----HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE----TVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 109 VvIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e----~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
++|-.++...+.+.++.. ++.+.++|+-+-|+... -.+.+.+......+.++-.|||+--+
T Consensus 72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence 999777777776666544 45778888776687321 12345565655558888999987654
No 83
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=97.74 E-value=9.1e-05 Score=73.25 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=88.6
Q ss_pred CCCCceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhhc-CC-----CCCCee
Q 022057 31 PPQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVCD-ME-----QPLEIP 89 (303)
Q Consensus 31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~g-~~-----~~~gv~ 89 (303)
.+.|++||+|+|+ ||+||.+.+.+.+. +++|+|++=|... .|+--+++.- .. ....+.
T Consensus 71 ~~~~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~ 149 (442)
T PLN02237 71 ETVAKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIK 149 (442)
T ss_pred cccceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEE
Confidence 3457799999998 99999999987755 6899999866210 0110000000 00 001122
Q ss_pred ecC--CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHH-HHH----HH--HHHhhhcCCeEE
Q 022057 90 VMS--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TVS----AL--SAFCDKASMGCL 160 (303)
Q Consensus 90 v~~--dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e-~~~----~L--~~~a~~~~i~vv 160 (303)
++. +++++-= .+.++|+|+++|-.....+.+...++.|...|+=+ .+..+ +.. .+ +.+..+ .-.++
T Consensus 150 V~~~~dp~~l~W---~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-~~~II 224 (442)
T PLN02237 150 VVSNRDPLKLPW---AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-VANIV 224 (442)
T ss_pred EEEcCCchhCCh---hhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-CCCEE
Confidence 322 2223210 01479999999999988999999999997777655 32211 100 00 111111 02334
Q ss_pred EcCCCcHHHHHHHHHHHHhccCC--CcEEEEEccC----C-CCCCCc
Q 022057 161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP----N-ARDFPS 200 (303)
Q Consensus 161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh----~-K~DaPS 200 (303)
+|=|=-.|-|.-+++.+.+.+ ...-+.-.|- + -.|.|+
T Consensus 225 --SnaSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h 269 (442)
T PLN02237 225 --SNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH 269 (442)
T ss_pred --ECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC
Confidence 555666666666666665432 1222344463 2 467773
No 84
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.73 E-value=0.0001 Score=70.95 Aligned_cols=100 Identities=21% Similarity=0.185 Sum_probs=66.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--cC--C-CCCCeeec--CC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--DM--E-QPLEIPVM--SD 93 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g~--~-~~~gv~v~--~d 93 (303)
|++||+|+|+ ||+||.+.+.+.+.+++|+|++=|... .|+--+++. +- . ....++++ .|
T Consensus 1 m~~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 1 MKTKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD 79 (343)
T ss_pred CceEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 6689999998 999999999988788999999866210 011000000 00 0 01123333 35
Q ss_pred HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
++++-= .+.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 80 p~~~~W---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (343)
T PRK07729 80 PKELPW---TDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT 120 (343)
T ss_pred hhhCcc---cccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence 554420 01479999999999999999999999997777654
No 85
>PRK07680 late competence protein ComER; Validated
Probab=97.70 E-value=0.00032 Score=65.02 Aligned_cols=99 Identities=10% Similarity=0.159 Sum_probs=64.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|||+|+|+ |.||+.+++.+.+...+ +-+.+++++. .....+.. .+ ++.++.+.++++ .++|+||-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~------~~aDiVil 68 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVI------SQSDLIFI 68 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHH------HhCCEEEE
Confidence 47999998 99999999998755322 3355677642 22222221 23 677778888877 37899998
Q ss_pred cCCchhHHHHHHHHHH---cCCCeEEeCC-CCCHHHHHH
Q 022057 113 FTDASTVYDNVKQATA---FGMRSVVYVP-HIQLETVSA 147 (303)
Q Consensus 113 fT~p~a~~~~~~~al~---~g~~vVigTT-G~~~e~~~~ 147 (303)
+..|..+.+.+..... .+. +|+-.+ |.+.++++.
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~-~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEH-CLVSITSPISVEQLET 106 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCC-EEEEECCCCCHHHHHH
Confidence 8888888777765433 344 454444 676554443
No 86
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.70 E-value=0.0002 Score=70.05 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=63.4
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHH-HhccccCCCccEEE
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVI 111 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVvI 111 (303)
.+++||+|+|+||..|+.+++.+.++|+++|+.+......|+......-.......+...+++.. + .++|+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~------~~~DvVf 109 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF------SDVDAVF 109 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh------cCCCEEE
Confidence 35789999999999999999999999999999987654444433221100000112212233322 3 3689998
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVPH 139 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTTG 139 (303)
-+...+...+.+.. ++.|+.||-=++.
T Consensus 110 ~Alp~~~s~~i~~~-~~~g~~VIDlSs~ 136 (381)
T PLN02968 110 CCLPHGTTQEIIKA-LPKDLKIVDLSAD 136 (381)
T ss_pred EcCCHHHHHHHHHH-HhCCCEEEEcCch
Confidence 55555566777776 4788777655443
No 87
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.69 E-value=0.00052 Score=64.12 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=71.8
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p 116 (303)
||+|+|+ |.||+.++..+.+ .++++. ++|++. .....+. ..|....++.+++++ ++|+||.+.+.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence 6999997 9999999998884 578876 467642 2222222 345555678888873 79999977654
Q ss_pred hh-HHHHH---HHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 117 ST-VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 117 ~a-~~~~~---~~al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
.. +.+.+ ..++ ..|. +|+-++..++...+++.+..++.++.++-+|
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 33 33332 1122 2333 4444555556666778888887788877766
No 88
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=97.67 E-value=0.00051 Score=65.70 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhhcCC--------
Q 022057 36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDME-------- 83 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~---~~-------------------~~~eLvg~vd~--~~~g~d~~~~~g~~-------- 83 (303)
+||+|+|- |+-.+.+++-+. .. .|+|+|+++|. ++.|+|+.+.+-..
T Consensus 1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~ 79 (351)
T TIGR03450 1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA 79 (351)
T ss_pred CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence 69999998 999999988653 11 16799999985 56788887654221
Q ss_pred --CCCCeeec-----C---------------CHHHHHhccccCCCccEEEEcCC---chhHHHHHHHHHHcCCCeEEeCC
Q 022057 84 --QPLEIPVM-----S---------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 84 --~~~gv~v~-----~---------------dl~~~l~~~~~~~~~DVvIDfT~---p~a~~~~~~~al~~g~~vVigTT 138 (303)
.+.||.|. + ..+++.+. +++.++||+|.+-+ -++..-++..|++.|++.|-+||
T Consensus 80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~-lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P 158 (351)
T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQA-LKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALP 158 (351)
T ss_pred ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHH-HHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccC
Confidence 11233321 1 12222221 23478999999753 45667788899999999999999
Q ss_pred CCCHHHHHHHHHHhhhcCCeEEEcCCC-c-HHHHHHHHH-HHHhc
Q 022057 139 HIQLETVSALSAFCDKASMGCLIAPTL-S-IGSILLQQA-AISAS 180 (303)
Q Consensus 139 G~~~e~~~~L~~~a~~~~i~vv~a~N~-S-iGv~ll~~~-a~~~~ 180 (303)
-+... ..++.+.++++|+|++ .--+ | +|..++.+. +..+.
T Consensus 159 ~~ia~-~p~~a~~f~e~glPi~-GDD~Ksq~GaTi~h~vLa~lf~ 201 (351)
T TIGR03450 159 VFIAS-DPEWAKKFTDAGVPIV-GDDIKSQVGATITHRVLAKLFE 201 (351)
T ss_pred ccccC-CHHHHHHHHHCCCCEe-cccccccCCCchHHHHHHHHHH
Confidence 65432 2457777888999844 3443 3 788877553 44443
No 89
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.67 E-value=0.0003 Score=67.93 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=79.1
Q ss_pred CCCceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCcc
Q 022057 32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA 108 (303)
Q Consensus 32 ~~~~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~D 108 (303)
+.+++||+|+|++|..|+.+++.+.+ +|..+|..+......|+.... .+ ..+.+ .+++ +.+ .++|
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v-~~~~~~~~------~~~D 71 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTV-EELTEDSF------DGVD 71 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEE-EeCCHHHH------cCCC
Confidence 45578999999999999999999987 788999887665444554432 11 12222 2222 334 3799
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCeEEeC-------------CCCCHHHHHHHHHHhh-hcCCeEEEcCCCcHHHHH
Q 022057 109 VVIDFTDASTVYDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCD-KASMGCLIAPTLSIGSIL 171 (303)
Q Consensus 109 VvIDfT~p~a~~~~~~~al~~g~~vVigT-------------TG~~~e~~~~L~~~a~-~~~i~vv~a~N~SiGv~l 171 (303)
+++-+...+...+.+..+.+.|+.||-=+ |.++.++ |...-. +....++-.||=+.-..+
T Consensus 72 ~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~---i~~~~~~~~~~~iIanPgC~~t~~~ 145 (344)
T PLN02383 72 IALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEA---MKHIKLGKGKGALIANPNCSTIICL 145 (344)
T ss_pred EEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHH---HHhhhhcccCCcEEECCCcHHHHHH
Confidence 99844555667888898989998877433 2234443 333211 111347877886655543
No 90
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.67 E-value=0.00048 Score=64.29 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=74.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
|.+||+++|+ |+||..+++.+.+.. ..++. ++|++. ..+..+. +++|+.++.+.++++ .++|+|
T Consensus 1 ~~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~------~~aDiI 67 (272)
T PRK12491 1 MNKQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNAS---DKYGITITTNNNEVA------NSADIL 67 (272)
T ss_pred CCCeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHH---HhcCcEEeCCcHHHH------hhCCEE
Confidence 4568999998 999999999988642 12443 456542 2222222 235676777877877 378999
Q ss_pred EEcCCchhHHHHHHHHHHc--CCCeEEe-CCCCCHHHHHHHHHHhhhcCCeE-EEcCCCcHHH
Q 022057 111 IDFTDASTVYDNVKQATAF--GMRSVVY-VPHIQLETVSALSAFCDKASMGC-LIAPTLSIGS 169 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~--g~~vVig-TTG~~~e~~~~L~~~a~~~~i~v-v~a~N~SiGv 169 (303)
|-+..|....+.+...... +..+|+- ..|.+-++++++ .... .++ =.-||...-+
T Consensus 68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~---l~~~-~~vvR~MPN~~~~v 126 (272)
T PRK12491 68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENE---FDRK-LKVIRVMPNTPVLV 126 (272)
T ss_pred EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHh---cCCC-CcEEEECCChHHHH
Confidence 9888998888877654432 2235544 448987665443 3211 222 2447776644
No 91
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.66 E-value=0.00032 Score=68.46 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=75.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEE-ecCC---------CCc---------chhhhhcCCCCCCeeec---
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI-DSHS---------VGE---------DIGMVCDMEQPLEIPVM--- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~v-d~~~---------~g~---------d~~~~~g~~~~~gv~v~--- 91 (303)
|.||+|+|+||.+|+..++.+.+.| .++++++. +.+. .+. ...++.......++.++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 4689999999999999999998776 69999987 3210 000 00111000001122232
Q ss_pred CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC-CCCCHHHHHHHHHHhhhcCCeEE
Q 022057 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT-TG~~~e~~~~L~~~a~~~~i~vv 160 (303)
+.+.++++ ..++|+|+....-.+..+....|+++|++|.+.. .-+- ..-..|.++++++|..++
T Consensus 81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV-~aG~~i~~~a~~~g~~i~ 145 (385)
T PRK05447 81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV-CAGELVMDAAKKSGAQIL 145 (385)
T ss_pred hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH-hhHHHHHHHHHHcCCeEE
Confidence 23445554 3578999988877777888999999999999843 2111 122346666666665544
No 92
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.66 E-value=0.00079 Score=63.40 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=76.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||+++|. |+||..+++.+.+ .++++. ++|++. +...+. ..|+....+..++. ..+|+||-+.+
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~-~G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~------~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLAR-AGHQLH-VTTIGP---VADELL----SLGAVSVETARQVT------EASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHH------hcCCEEEEeCC
Confidence 38999997 9999999999874 567776 566542 122232 34566677888876 37899986654
Q ss_pred ch-hHHHHHHH---HH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 116 AS-TVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 116 p~-a~~~~~~~---al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
.+ .+.+.+.. .+ ..| .+|+-++..+++..+++.+.+++.|+..+=+| +|=|.
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP-VsGg~ 123 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP-VSGGE 123 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCH
Confidence 33 34444321 12 223 46667777778888889888888888877666 44344
No 93
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.64 E-value=8e-05 Score=62.00 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=52.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+||+|+|+ ||+|+.+++.+. +.+++++++..++. ........ ..+-..+.++++++ .++|+++ .|
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~--~sa~~a~~---~~~~~~~~~~~~~~------~~aDlv~-ia 75 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSP--ASAERAAA---FIGAGAILDLEEIL------RDADLVF-IA 75 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH---HHHHHHC-----TT-----TTGGG------CC-SEEE-E-
T ss_pred ccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCc--cccccccc---cccccccccccccc------ccCCEEE-EE
Confidence 589999998 999999999887 56899999887542 11122221 12222234566776 4799998 55
Q ss_pred CchhH-HHHHHHHHHc----CCCeEEeCCCCCH
Q 022057 115 DASTV-YDNVKQATAF----GMRSVVYVPHIQL 142 (303)
Q Consensus 115 ~p~a~-~~~~~~al~~----g~~vVigTTG~~~ 142 (303)
.|+.. .+........ .=.+|+=|.|-..
T Consensus 76 vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 76 VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred echHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 55555 4555555444 1358888887544
No 94
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=0.00081 Score=63.85 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=72.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (303)
|||+|+|+ |.||..++..+.+ .+.++. +++++.. +.....+.+...+.++.++.++++.+. .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence 48999998 9999999998875 466665 5665310 000000111111224556788887763 378
Q ss_pred cEEEEcCCchhHHHHHHHHHH----cCCCeEEeCCCCCHHH----HHHHHHHhhhcCCeEEEcCCCcH
Q 022057 108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 108 DVvIDfT~p~a~~~~~~~al~----~g~~vVigTTG~~~e~----~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
|++|-++.+..+.+.++.... .+.++|+-+-|+..+. .+.+.+......+.++-.|+++.
T Consensus 73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~ 140 (326)
T PRK14620 73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAK 140 (326)
T ss_pred CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHH
Confidence 999988888877777766554 3456777666874311 12344443222233344777643
No 95
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=0.0005 Score=66.92 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=79.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC------CcEEEEEEecCC--CCc-----------chhhhhcCCCCCCeeecCCHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS--VGE-----------DIGMVCDMEQPLEIPVMSDLT 95 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~------~~eLvg~vd~~~--~g~-----------d~~~~~g~~~~~gv~v~~dl~ 95 (303)
++||+|+|+ |.+|.+++..+..+- +.++.- +.++. .++ +...+.|..-+-++..++|++
T Consensus 11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 589999998 999999999988653 134332 22221 011 111122322233566688999
Q ss_pred HHHhccccCCCccEEEEcCCchhHHHHHHHHHH-----cCCCeEEeCCCCCHHHH--HHHHHHhhh---cCCeEEEcCCC
Q 022057 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCDK---ASMGCLIAPTL 165 (303)
Q Consensus 96 ~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~-----~g~~vVigTTG~~~e~~--~~L~~~a~~---~~i~vv~a~N~ 165 (303)
+++ .++|+||-..+|..+.+.+..... .+..+|+.+-|++.++. ..+.+..++ ..+.++..|||
T Consensus 89 eav------~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~ 162 (365)
T PTZ00345 89 EAV------EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV 162 (365)
T ss_pred HHH------hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH
Confidence 888 479999988888888887776543 23456666668764331 122222221 34677899999
Q ss_pred cHHHH
Q 022057 166 SIGSI 170 (303)
Q Consensus 166 SiGv~ 170 (303)
+-=+.
T Consensus 163 A~Eva 167 (365)
T PTZ00345 163 ANDVA 167 (365)
T ss_pred HHHHH
Confidence 98884
No 96
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.63 E-value=0.00038 Score=61.48 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=69.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI 111 (303)
|.+|+|+|+ |++|++++..-- ++.++++++++|.+. +..|. .-.+++++ ++++..+.+ .++|+.|
T Consensus 84 ~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~------~~VG~-~~~~v~V~~~d~le~~v~~----~dv~iai 151 (211)
T COG2344 84 TTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDP------DKVGT-KIGDVPVYDLDDLEKFVKK----NDVEIAI 151 (211)
T ss_pred ceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCH------HHhCc-ccCCeeeechHHHHHHHHh----cCccEEE
Confidence 689999999 999999998654 367899999999642 12222 12346775 588888864 5889999
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
-+.+.+.+-+.+....++|+.-+.--|
T Consensus 152 LtVPa~~AQ~vad~Lv~aGVkGIlNFt 178 (211)
T COG2344 152 LTVPAEHAQEVADRLVKAGVKGILNFT 178 (211)
T ss_pred EEccHHHHHHHHHHHHHcCCceEEecc
Confidence 777777778888999999987766443
No 97
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.62 E-value=0.00095 Score=62.81 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=75.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|.||+++|. |.||..++..+.+ .++++. ++|++. ....++. ..++....++++++ .++|+||-+.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~------~~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAA------AGAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHH------hcCCEEEEec
Confidence 358999997 9999999998874 467764 577642 2223332 23555677888877 4789999777
Q ss_pred Cchh-HHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 115 DAST-VYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 115 ~p~a-~~~~~~------~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
+++. +.+.+. ..+..|. +++-++..+++..+++.+..++.++..+=+|-+.
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g 123 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence 6654 333321 1123343 4455555556777888888888888877666654
No 98
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.62 E-value=0.00032 Score=67.51 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=67.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
+.+||+|+|+||-.|+.+++.+.+ .|..+|..+......|+... +.+ ..+++. ++++..- .++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf 71 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF 71 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence 358999999999999999999998 79999998876555566554 211 134443 4444321 3689998
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEe
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVig 136 (303)
-+++.+...+.+..+.++|+.||-=
T Consensus 72 ~a~p~~~s~~~~~~~~~~g~~VIDl 96 (336)
T PRK08040 72 FVAGREASAAYAEEATNAGCLVIDS 96 (336)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEEC
Confidence 5566677789999999999977643
No 99
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.61 E-value=0.00014 Score=71.18 Aligned_cols=136 Identities=17% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCCCceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCc---c----hhhhhcCCCCCCe
Q 022057 31 PPQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGE---D----IGMVCDMEQPLEI 88 (303)
Q Consensus 31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~---d----~~~~~g~~~~~gv 88 (303)
.+.|++||+|+|+ ||+||.+.+.+.+. +..+|+++=|... .|+ + .+...-. ....+
T Consensus 56 ~~~~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v-~gk~I 133 (395)
T PLN03096 56 VTEAKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISV-DGKVI 133 (395)
T ss_pred ccccccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEE-CCEEE
Confidence 3457799999998 99999999998866 6899998754210 000 0 0000000 01123
Q ss_pred eecC--CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-----------CCCHHHHHHHHHHhhhc
Q 022057 89 PVMS--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-----------HIQLETVSALSAFCDKA 155 (303)
Q Consensus 89 ~v~~--dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-----------G~~~e~~~~L~~~a~~~ 155 (303)
+++. |++++-= .+.++|+|+++|-.....+.+...++.|...|+=+. |.++++ +. .+
T Consensus 134 ~v~~~~dp~~~~w---~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~---l~---~~- 203 (395)
T PLN03096 134 KVVSDRNPLNLPW---GELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADD---YK---HS- 203 (395)
T ss_pred EEEEcCCcccccc---cccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHH---hc---cC-
Confidence 3332 3444320 114799999999988889999999999976665442 223332 21 12
Q ss_pred CCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022057 156 SMGCLIAPTLSIGSILLQQAAISASF 181 (303)
Q Consensus 156 ~i~vv~a~N~SiGv~ll~~~a~~~~~ 181 (303)
-.++ +|=|=-.|-|.-+++.+.+
T Consensus 204 -~~II--SnaSCTTn~LAp~lkvL~~ 226 (395)
T PLN03096 204 -DPII--SNASCTTNCLAPFVKVLDQ 226 (395)
T ss_pred -CCEE--ECCchHHHHHHHHHHHHHH
Confidence 2333 6777777777666666654
No 100
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.59 E-value=0.00012 Score=70.56 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=77.2
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcC-------CcEEEEEEecCC-------------CCcchhhhhcCCCCCCeeecCCHHH
Q 022057 37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLTM 96 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~-------------~g~d~~~~~g~~~~~gv~v~~dl~~ 96 (303)
||+|+|+ |.+|.+++..+..+. +.++.- +.++. .......+.|..-+-++..++|+++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE 78 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence 6999998 999999999887532 144332 32210 0011111222211224567789999
Q ss_pred HHhccccCCCccEEEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHH--HHHHHHHHhh---hcCCeEEEcCCCcHH
Q 022057 97 VLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE--TVSALSAFCD---KASMGCLIAPTLSIG 168 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e--~~~~L~~~a~---~~~i~vv~a~N~SiG 168 (303)
++ .++|++|-..++..+.+.+... ++.+.++|+.|-|+..+ ....+.+..+ ...+.++..|||+.-
T Consensus 79 al------~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~E 152 (342)
T TIGR03376 79 AA------KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANE 152 (342)
T ss_pred HH------hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHH
Confidence 88 4799998777777776656554 45577788877798765 3222222221 234777899999887
Q ss_pred HH
Q 022057 169 SI 170 (303)
Q Consensus 169 v~ 170 (303)
+.
T Consensus 153 va 154 (342)
T TIGR03376 153 VA 154 (342)
T ss_pred HH
Confidence 75
No 101
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.56 E-value=0.00063 Score=62.83 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=62.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|||+++|+ |.||..+++.+.+... -++.+ .+++. ...++....+..+++ .++|+||-
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~------------~~~~~~~~~~~~~~~------~~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYY-HTPSK------------KNTPFVYLQSNEELA------KTCDIIVL 63 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEE-ECCCh------------hcCCeEEeCChHHHH------HhCCEEEE
Confidence 68999998 9999999999986532 12433 44431 012233445666666 37899999
Q ss_pred cCCchhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHH
Q 022057 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL 148 (303)
Q Consensus 113 fT~p~a~~~~~~~al~--~g~~vVigTTG~~~e~~~~L 148 (303)
+..|....+.+..... .+..+|+-..|.+.++++.+
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~ 101 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM 101 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH
Confidence 9999988888876553 24456666668987665554
No 102
>PLN02712 arogenate dehydrogenase
Probab=97.55 E-value=0.0011 Score=69.31 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=80.8
Q ss_pred EEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhcccc
Q 022057 24 FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ 103 (303)
Q Consensus 24 ~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~ 103 (303)
.-+|..+. +++||+|+|+ |+||+.+++.+.+ .+.+++ ++|++. ... .+ .+.|+..+.++++++.
T Consensus 360 ~~~~~~~~--~~~kIgIIGl-G~mG~slA~~L~~-~G~~V~-~~dr~~---~~~-~a---~~~Gv~~~~~~~el~~---- 423 (667)
T PLN02712 360 VSGCVNDG--SKLKIAIVGF-GNFGQFLAKTMVK-QGHTVL-AYSRSD---YSD-EA---QKLGVSYFSDADDLCE---- 423 (667)
T ss_pred hhhccCCC--CCCEEEEEec-CHHHHHHHHHHHH-CcCEEE-EEECCh---HHH-HH---HHcCCeEeCCHHHHHh----
Confidence 34555554 4579999997 9999999999875 567877 566542 111 11 1355666788888774
Q ss_pred CCCccEEEEcCCchhHHHHHHHHHH--cC-CCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcHHH
Q 022057 104 SKARAVVIDFTDASTVYDNVKQATA--FG-MRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS 169 (303)
Q Consensus 104 ~~~~DVvIDfT~p~a~~~~~~~al~--~g-~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~SiGv 169 (303)
..+|+||-+++|....+.+..... .+ -.+|+-.+.-...-.+.+.++... +..++ .-|+++...
T Consensus 424 -~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~-~~~~v~~HPm~G~e~ 491 (667)
T PLN02712 424 -EHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ-DFDILCTHPMFGPES 491 (667)
T ss_pred -cCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC-CCceEeeCCCCCccc
Confidence 358999989888888887776543 21 235655543333334445554432 45555 677776543
No 103
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00052 Score=64.02 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=73.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|+||+++|+ |+||+.++.-+.+... -+-+-+.++.. .....+. ..+|+.++++.+++. ...|+|+-
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~------~~advv~L 68 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAV------EEADVVFL 68 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHH------hhCCEEEE
Confidence 579999998 9999999999987652 23444555532 1111233 367777667777776 47999999
Q ss_pred cCCchhHHHHHHHHH--HcCCCeEEeCCCCCHHHHHHHH
Q 022057 113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALS 149 (303)
Q Consensus 113 fT~p~a~~~~~~~al--~~g~~vVigTTG~~~e~~~~L~ 149 (303)
.-.|....+.+.... ..++.+|+=.-|.+-++++.+.
T Consensus 69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l 107 (266)
T COG0345 69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLL 107 (266)
T ss_pred EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHc
Confidence 999999888888775 4677777777799887655543
No 104
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0012 Score=63.16 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=81.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|+||||+|+||-+|+.+++.+.+ ++.++.+.++-+ +..|+...++.++ . +.+-++..+... ..++|+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~--~--~~v~~~~~~~~~----~~~~Divf- 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK--S--IGVPEDAADEFV----FSDVDIVF- 71 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc--c--ccCccccccccc----cccCCEEE-
Confidence 57999999999999999999988 788886666654 4567765555543 2 233222222221 14789887
Q ss_pred cCC-chhHHHHHHHHHHcCCCeEEeCCCCCHH----------HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 113 FTD-ASTVYDNVKQATAFGMRSVVYVPHIQLE----------TVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 113 fT~-p~a~~~~~~~al~~g~~vVigTTG~~~e----------~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
|+. -+...++...+.++|+.||--++.|-.+ ..+.|.+.-+ +| .++--||=|.-.
T Consensus 72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg-~IianpNCst~~ 137 (334)
T COG0136 72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RG-FIIANPNCSTIQ 137 (334)
T ss_pred EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CC-CEEECCChHHHH
Confidence 665 4666999999999998877666544211 1223554444 33 588889988765
No 105
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.54 E-value=0.00022 Score=68.55 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=63.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhh--cCC---CCCCeeecC--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVC--DME---QPLEIPVMS-- 92 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~--g~~---~~~gv~v~~-- 92 (303)
|+||+|+|+ ||+||.+.+.+.+. +++|+|++-|... .|+--+++. +.. ....+.++.
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 689999998 99999999997766 5899999876310 011000000 000 011233332
Q ss_pred CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
|++++-= .+.++|+|+++|......+.+...++.|...|+=+
T Consensus 80 dp~~~~W---~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 80 NPLNLPW---KEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CcccCCh---hhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 3333310 01379999999988888999999999997666544
No 106
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.52 E-value=0.0007 Score=63.96 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=64.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.|||+|+|+ |.||+.+++.+.. .++++. +++++. ..++++++ .++|+||-+.
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~-~G~~V~-~~~r~~-------------------~~~~~~~~------~~advvi~~v 55 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASA-NGHRVR-VWSRRS-------------------GLSLAAVL------ADADVIVSAV 55 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEeCCC-------------------CCCHHHHH------hcCCEEEEEC
Confidence 478999997 9999999998874 567775 566542 03466776 3789999776
Q ss_pred CchhHHHHHHHHHH----cCCCeEEeCCCCCHHHHHHHHHHhhh--cCCeEE--EcCCCcH
Q 022057 115 DASTVYDNVKQATA----FGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAPTLSI 167 (303)
Q Consensus 115 ~p~a~~~~~~~al~----~g~~vVigTTG~~~e~~~~L~~~a~~--~~i~vv--~a~N~Si 167 (303)
+.+.+.+.+..... .++-+|..|+|++++....+.+..+. .+.|++ -.|+++-
T Consensus 56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ 116 (308)
T PRK14619 56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSK 116 (308)
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHH
Confidence 66555665554432 24556666667765432222222211 123443 6777663
No 107
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.45 E-value=0.00077 Score=65.18 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=75.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeec-CCHHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVv 110 (303)
.+||+|+|+||-.|+.+++.+.++|+++ |..+......|+... +.+ . .+.+. .+.++ + .++|++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~---~-~l~v~~~~~~~-~------~~~Div 72 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG---R-EIIIQEAKINS-F------EGVDIA 72 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC---c-ceEEEeCCHHH-h------cCCCEE
Confidence 3799999999999999999998899998 555554444455442 221 1 33332 13333 3 368998
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeC-------------CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigT-------------TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l 171 (303)
+=++..+...+.+..+.++|+.||-=+ |.++.+ .|.. + ..++-.||=+.-..+
T Consensus 73 f~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e---~i~~---~--~~iIanPnC~tt~~~ 138 (347)
T PRK06728 73 FFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAH---TLKE---H--KGIIAVPNCSALQMV 138 (347)
T ss_pred EECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHH---HHhc---c--CCEEECCCCHHHHHH
Confidence 845566777889999999998777433 223333 3332 1 246888887766543
No 108
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=97.44 E-value=0.0004 Score=66.60 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=62.3
Q ss_pred eEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecCCCC-------cc--hhhh------hcCC---CCCCeeec--CC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVG-------ED--IGMV------CDME---QPLEIPVM--SD 93 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g-------~d--~~~~------~g~~---~~~gv~v~--~d 93 (303)
||||+|+ ||+||.+.+.+.+. ++++++++-|..... .| -+.+ .|.. ....+.++ .+
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999998 99999999998865 469999988732100 00 0000 0000 00123333 35
Q ss_pred HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeE-EeCC
Q 022057 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVP 138 (303)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vV-igTT 138 (303)
++++-= .+.++|+|+++|.+....+.+..++++|..+| +..+
T Consensus 80 p~~~~w---~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 80 PEALPW---RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred hhhccc---cccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 554321 11479999999999999999999999995444 4444
No 109
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.44 E-value=0.00035 Score=67.24 Aligned_cols=99 Identities=22% Similarity=0.261 Sum_probs=63.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCc---ch---hhhhcCCCCCCeeec-
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGE---DI---GMVCDMEQPLEIPVM- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~---d~---~~~~g~~~~~gv~v~- 91 (303)
|+||+|+|+ ||+||.+.+.+.+. ++++|+++=|.. ..|+ +. +...-. ....+.++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v-~g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFV-GDDAIRLLH 78 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEE-CCEEEEEEE
Confidence 579999999 99999999998864 579999876411 0010 00 000000 01123333
Q ss_pred -CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
.+++++-= .+.++|+|+++|......+.+..++++|...|+=+.
T Consensus 79 ~~~p~~~~w---~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSa 123 (336)
T PRK13535 79 ERDIASLPW---RELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSH 123 (336)
T ss_pred cCCcccCcc---cccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecC
Confidence 24444320 014899999999999999999999999976666543
No 110
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.43 E-value=0.00093 Score=63.90 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=82.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEE-EEEecC------CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA-GAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLv-g~vd~~------~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (303)
|+||+|+|+ |..|.+++..+.++ +.++. .+.|.. ...+....+-|..-+-++..++|++++++ ++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~n-g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARN-GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhc-CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence 579999998 99999999988865 33333 333310 00011112223222445667899999984 69
Q ss_pred cEEEEcCCchhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhh----cCCeEEEcCCCcHHHH
Q 022057 108 AVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI 170 (303)
Q Consensus 108 DVvIDfT~p~a~~~~~~~---al~~g~~vVigTTG~~~e~~~~L~~~a~~----~~i~vv~a~N~SiGv~ 170 (303)
|+++-..+.....+.++. .+..+.++|+.|-|+.++..+.+.+..++ ..+.++-.|||+-=+.
T Consensus 73 d~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa 142 (329)
T COG0240 73 DIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA 142 (329)
T ss_pred CEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence 999866665666666655 45788899998889876544444444332 2377888999987775
No 111
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.37 E-value=0.0019 Score=60.36 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=73.3
Q ss_pred EEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc-hh
Q 022057 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA-ST 118 (303)
Q Consensus 40 V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p-~a 118 (303)
++|. |.||..+++.+.+ .++++. ++|++. .....+. +.|+...++++++++ ++|+||-+-++ +.
T Consensus 1 ~IGl-G~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH 65 (288)
T ss_pred CCcc-cHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence 4797 9999999999874 567765 467642 2223332 346667788888874 78999977765 44
Q ss_pred HHHHH---HHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 119 VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 119 ~~~~~---~~al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
+.+.+ .... ..| .+|+-+++.+++..+++.+.+++.|+..+=+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred HHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence 44444 2222 333 36666678888888899998888888876665
No 112
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.00092 Score=61.37 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=57.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC--------C----cchhhhhcC-CCCCC----eee-------c
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------G----EDIGMVCDM-EQPLE----IPV-------M 91 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g----~d~~~~~g~-~~~~g----v~v-------~ 91 (303)
|+|+++|. ||||..+++.+. +.++++|+ +|.+.. | ..+.+++.. ..+.- +|. .
T Consensus 1 M~iGmiGL-GrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi 77 (300)
T COG1023 1 MQIGMIGL-GRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI 77 (300)
T ss_pred Ccceeecc-chhhHHHHHHHH-hCCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence 58999997 999999999988 56888886 564210 0 011112110 00100 111 1
Q ss_pred CCHHHHHhccccCCCccEEEEc--CCchhHHHHHHHHHHcCCCeE-EeCCC
Q 022057 92 SDLTMVLGSISQSKARAVVIDF--TDASTVYDNVKQATAFGMRSV-VYVPH 139 (303)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDf--T~p~a~~~~~~~al~~g~~vV-igTTG 139 (303)
+++...| ..-|+|||- |+-.......+.+.+.|++.+ +||+|
T Consensus 78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 2233333 346999996 455556667777899999998 77764
No 113
>PLN02256 arogenate dehydrogenase
Probab=97.32 E-value=0.0033 Score=59.69 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=66.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
++||+|+|+ |.||+.+++.+.+ .+.++.+ +|++.. .+.+ ...|+..+.+.++++. .++|+||-++
T Consensus 36 ~~kI~IIG~-G~mG~slA~~L~~-~G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVilav 100 (304)
T PLN02256 36 KLKIGIVGF-GNFGQFLAKTFVK-QGHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVLLCT 100 (304)
T ss_pred CCEEEEEee-CHHHHHHHHHHHh-CCCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEEEec
Confidence 579999997 9999999998875 4678774 665421 1222 2356666788888763 3689999999
Q ss_pred CchhHHHHHHHH-HHc--CCCeEEeCCCCCHHHHHHHHHHh
Q 022057 115 DASTVYDNVKQA-TAF--GMRSVVYVPHIQLETVSALSAFC 152 (303)
Q Consensus 115 ~p~a~~~~~~~a-l~~--g~~vVigTTG~~~e~~~~L~~~a 152 (303)
+|....+.+... ... .-.+|+-.......-.+.+.+..
T Consensus 101 p~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l 141 (304)
T PLN02256 101 SILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVL 141 (304)
T ss_pred CHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhC
Confidence 998888877765 221 22355444333223344455443
No 114
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.30 E-value=0.0011 Score=63.94 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=60.1
Q ss_pred eEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEEEc
Q 022057 37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF 113 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvIDf 113 (303)
||+|+|++|..|+.+++.+.+ .|..+|+.+......|+... +.+ ..+. ..+++ +.+ .++|+++.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~------~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESF------EGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHh------cCCCEEEEC
Confidence 689999999999999999887 67788876655444444432 111 1122 22222 223 379999988
Q ss_pred CCchhHHHHHHHHHHcCCCeE
Q 022057 114 TDASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vV 134 (303)
+......+.+..+++.|+.+|
T Consensus 69 ~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 888888999999999998655
No 115
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.24 E-value=0.0015 Score=59.44 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=77.1
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-ee-----ecCCHHHHHhccc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS 102 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~g-v~-----v~~dl~~~l~~~~ 102 (303)
+.+||+|.|+ |++|+.+++.+. ..+++++++.|+ +..|-|..++.....+.+ +. .+-+.++++.
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~--- 104 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE--- 104 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence 4589999997 999999999887 469999999996 233556655442211111 11 1113355554
Q ss_pred cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (303)
Q Consensus 103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~SiG 168 (303)
.++||+|.++.+... .+++. +....+|+|-. .++++..+.| +++ .+++.|-|..-
T Consensus 105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~r--Gi~~~PD~~aN 162 (227)
T cd01076 105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HER--GVLVVPDILAN 162 (227)
T ss_pred --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHC--CCEEEChHHhc
Confidence 589999999977665 44444 44699999976 3665433333 343 55787887653
No 116
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.23 E-value=0.0017 Score=61.75 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=59.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
-||+|+|++|-+|..+++.+..+|++||+.+...... . ..+.++++ .++|+++-+++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~-----------~------~~~~~~~~------~~~D~vFlalp 58 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK-----------D------AAERAKLL------NAADVAILCLP 58 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc-----------C------cCCHhHhh------cCCCEEEECCC
Confidence 3899999999999999999999999999998754310 0 01334454 36899986666
Q ss_pred chhHHHHHHHHHHcCCCeEE
Q 022057 116 ASTVYDNVKQATAFGMRSVV 135 (303)
Q Consensus 116 p~a~~~~~~~al~~g~~vVi 135 (303)
.+...+.+..+.+.|+.||-
T Consensus 59 ~~~s~~~~~~~~~~g~~VID 78 (310)
T TIGR01851 59 DDAAREAVSLVDNPNTCIID 78 (310)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 77778999988888987663
No 117
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.23 E-value=0.0056 Score=58.81 Aligned_cols=128 Identities=11% Similarity=0.084 Sum_probs=72.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhh-cCCCCCCeeecCCHHHHHhccccCCC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKA 106 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~ 106 (303)
.|+||+|+|+ |.||..++..+.+.. .......++.. .+.....+. +..-+..+.+++|+++++ .+
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~------~~ 77 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA------NC 77 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH------hc
Confidence 3689999998 999999999888653 22222222110 011100010 100012345677888877 47
Q ss_pred ccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHH----HHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 107 ~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~----~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+|+||-++++..+.+.++.... .+.++|+-+-|+..+. .+.|.+........++..||++--+
T Consensus 78 aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 78 ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREV 147 (341)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence 8999988887777666665543 3445666555876421 1233333222235577889988743
No 118
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.22 E-value=0.0049 Score=61.99 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=70.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|.+|+|+|. |.||+.++..+.+ .+++|. ++|++. ....++.......| +..+.+++++++++ .++|+||-
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIAS-RGFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence 468999997 9999999999884 577755 577642 12222221001113 44578999988531 35897776
Q ss_pred c-CCchhHHHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCe
Q 022057 113 F-TDASTVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 158 (303)
Q Consensus 113 f-T~p~a~~~~~~---~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~ 158 (303)
+ ++++.+.+.+. ..++.|.-+|-++|++..+..+.. +..++.|+.
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~ 121 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGIL 121 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCe
Confidence 6 45555555543 345667777777777655443444 444445555
No 119
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=97.21 E-value=0.0013 Score=61.06 Aligned_cols=126 Identities=13% Similarity=0.267 Sum_probs=76.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee------cCCHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~DV 109 (303)
|||.|.|+||- |+.+++.+.+ .++++++.+.... +...- . ...+.++ ..++.+.+.+ .++|+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~--~---~~g~~~v~~g~l~~~~l~~~l~~----~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLY--P---IHQALTVHTGALDPQELREFLKR----HSIDI 68 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-ccccc--c---ccCCceEEECCCCHHHHHHHHHh----cCCCE
Confidence 58999999987 9999998875 4688887665432 21111 0 0011222 2245555543 68999
Q ss_pred EEEcCCchhH---HHHHHHHHHcCCCeEEe-CCCC------C-HHHHHHHHHHhhh---cCCeEEEcCCCcHHHHHHHHH
Q 022057 110 VIDFTDASTV---YDNVKQATAFGMRSVVY-VPHI------Q-LETVSALSAFCDK---ASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 110 vIDfT~p~a~---~~~~~~al~~g~~vVig-TTG~------~-~e~~~~L~~~a~~---~~i~vv~a~N~SiGv~ll~~~ 175 (303)
|||+|+|-+. ......|.+.|+|.+== =+.| . -+..++..+++.+ .+-.++. ++|+.-|..+
T Consensus 69 VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~~~~~~i~l----ttG~k~l~~f 144 (256)
T TIGR00715 69 LVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPYLRGKRVFL----TAGASWLSHF 144 (256)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhccccCCcEEE----ecCcchHHHH
Confidence 9999999764 55667889999998832 1221 1 1122333334443 2335665 7888777666
Q ss_pred HH
Q 022057 176 AI 177 (303)
Q Consensus 176 a~ 177 (303)
..
T Consensus 145 ~~ 146 (256)
T TIGR00715 145 SL 146 (256)
T ss_pred hh
Confidence 53
No 120
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.20 E-value=0.0025 Score=64.32 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=69.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh--------hcCC----CCCC-eeecCCHHHHHhc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV--------CDME----QPLE-IPVMSDLTMVLGS 100 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~~--------~g~~----~~~g-v~v~~dl~~~l~~ 100 (303)
.+||+|+|+ |.||+.++..+.. .++++. ++|++... ....+. ..+. ...+ +.+.+|+++++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~-- 78 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV-- 78 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh--
Confidence 468999998 9999999998874 578775 57754210 011000 0000 0112 56678888887
Q ss_pred cccCCCccEEEEcCCchh-HHHH----HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057 101 ISQSKARAVVIDFTDAST-VYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 101 ~~~~~~~DVvIDfT~p~a-~~~~----~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
.++|+||...++.. +... +...+..+.-+.+.|.|++..+ |.+.+.+.+.-++..||-
T Consensus 79 ----~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n 141 (495)
T PRK07531 79 ----AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN 141 (495)
T ss_pred ----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence 47999998776553 2222 2233333443445555887654 445555555566666654
No 121
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.16 E-value=0.0033 Score=56.25 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=72.1
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCCHHHHHhccccCCCccEEEEc
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|+|+|++|++|+.+++.+.+ +++++.+.+.... ...+..+- ..|+.+ ++|.+.+.+.+ .++|+|+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence 78999999999999999997 8899998875431 11112221 223322 33444433221 589999877
Q ss_pred CC------chhHHHHHHHHHHcCCCeEEeCC-C--C------C-H----HHHHHHHHHhhhcCCeEEE
Q 022057 114 TD------ASTVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 114 T~------p~a~~~~~~~al~~g~~vVigTT-G--~------~-~----e~~~~L~~~a~~~~i~vv~ 161 (303)
+. .+.....++.|.+.|+..++=++ + . . . ++...++++.++.+++..+
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~ 139 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTI 139 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEE
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhcccccee
Confidence 76 23557788999999988887432 1 1 1 1 1234678888887776553
No 122
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.16 E-value=0.0085 Score=56.49 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=60.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
..||+|+|+ |.||..++..+.+..- .++ -++|++. ....... +.|+ .+..++++.+ .++|+||
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V-~~~dr~~--~~~~~a~----~~g~~~~~~~~~~~~~------~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEI-VGADRSA--ETRARAR----ELGLGDRVTTSAAEAV------KGADLVI 71 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEE-EEEECCH--HHHHHHH----hCCCCceecCCHHHHh------cCCCEEE
Confidence 468999997 9999999998875432 244 4667642 1111111 2232 3456677776 4799999
Q ss_pred EcCCchhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHH
Q 022057 112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAF 151 (303)
Q Consensus 112 DfT~p~a~~~~~~~al---~~g~~vVigTTG~~~e~~~~L~~~ 151 (303)
.++++....+.+.... +.+. +|+-.++.+.+..+.+.+.
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence 9998877666555443 2333 4544444544444444443
No 123
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.13 E-value=0.0012 Score=55.42 Aligned_cols=110 Identities=17% Similarity=0.091 Sum_probs=64.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe----eecCCHHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVv 110 (303)
..||+|+|+ |.||+.+++.+.+.. .+-+.++|++. ....+++. .++. ..+.+.++++ .++|+|
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~Dvv 85 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELL------AEADLI 85 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhcc------ccCCEE
Confidence 468999998 999999999988653 44455667642 12222221 1121 1245666665 479999
Q ss_pred EEcCCchhH----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 111 IDfT~p~a~----~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
|..+++..+ .......++.+.-++--.+- ... . .+.+.+++.|+.++
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~-~~~-~-~l~~~~~~~g~~~v 136 (155)
T cd01065 86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN-PLE-T-PLLKEARALGAKTI 136 (155)
T ss_pred EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC-CCC-C-HHHHHHHHCCCcee
Confidence 998877654 11223445666655433221 111 1 67777888777655
No 124
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.12 E-value=0.0015 Score=64.46 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=77.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhh--cCC----CCCCeeec--C
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVC--DME----QPLEIPVM--S 92 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~~--g~~----~~~gv~v~--~ 92 (303)
|+||+|+|+ ||+||.+.+.+.+.++++++++-|+.. .|+-.+++. .-. ....+.++ .
T Consensus 85 ~~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 479999998 999999999987678999999877321 011001110 000 00112232 2
Q ss_pred CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCC-CeEEeCC---------CCCHHHHHHHHHHhhhcCCeEEEc
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP---------HIQLETVSALSAFCDKASMGCLIA 162 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~-~vVigTT---------G~~~e~~~~L~~~a~~~~i~vv~a 162 (303)
+++++-= .+.++|+|+++|-.....+.+...++.|. .|||-.+ |.+.++ +. .+ -.++
T Consensus 164 dp~~~~w---~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~---l~---~~--~~II-- 230 (421)
T PLN02272 164 DPAEIPW---GDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKT---YK---PN--MNIV-- 230 (421)
T ss_pred CcccCcc---cccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHH---hC---CC--CCee--
Confidence 4443321 01268999998888888888888888885 5555544 233332 21 12 2444
Q ss_pred CCCcHHHHHHHHHHHHhcc
Q 022057 163 PTLSIGSILLQQAAISASF 181 (303)
Q Consensus 163 ~N~SiGv~ll~~~a~~~~~ 181 (303)
+|=|=-.|-|.-+++.+.+
T Consensus 231 SnaSCTTn~Lap~lk~L~~ 249 (421)
T PLN02272 231 SNASCTTNCLAPLAKVVHE 249 (421)
T ss_pred eCCCcHHHHHHHHHHHHHH
Confidence 5555555656556666543
No 125
>PLN02712 arogenate dehydrogenase
Probab=97.10 E-value=0.0069 Score=63.46 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
++||+|+|+ |+||+.+++.+.+. +++|++ +|++. . ...+ ...|+..+.++++++. ..+|+||-++
T Consensus 52 ~~kIgIIG~-G~mG~slA~~L~~~-G~~V~~-~dr~~---~-~~~A---~~~Gv~~~~d~~e~~~-----~~aDvViLav 116 (667)
T PLN02712 52 QLKIAIIGF-GNYGQFLAKTLISQ-GHTVLA-HSRSD---H-SLAA---RSLGVSFFLDPHDLCE-----RHPDVILLCT 116 (667)
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-EeCCH---H-HHHH---HHcCCEEeCCHHHHhh-----cCCCEEEEcC
Confidence 589999997 99999999998754 688766 56532 1 1112 2456777788888663 3689999999
Q ss_pred CchhHHHHHHHHH-Hc-C-CCeEEeCCCCCHHHHHHHHHH
Q 022057 115 DASTVYDNVKQAT-AF-G-MRSVVYVPHIQLETVSALSAF 151 (303)
Q Consensus 115 ~p~a~~~~~~~al-~~-g-~~vVigTTG~~~e~~~~L~~~ 151 (303)
++....+.+.... .. + -.+|+-++.....-.+.+.+.
T Consensus 117 P~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~ 156 (667)
T PLN02712 117 SIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDY 156 (667)
T ss_pred CHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHh
Confidence 9888777776543 21 2 235555544433223344444
No 126
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.05 E-value=0.0092 Score=59.42 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=66.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||+|+|++|.||+.+++.+.+ .+.++.+ ++++. ....+++ ...|+....++++.+ .++|+||-+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~v-~~r~~--~~~~~~a---~~~gv~~~~~~~e~~------~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE-KGFEVIV-TGRDP--KKGKEVA---KELGVEYANDNIDAA------KDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH-CCCEEEE-EECCh--HHHHHHH---HHcCCeeccCHHHHh------ccCCEEEEecC
Confidence 5899998559999999998875 5667654 55532 1112222 245666677888877 47899998888
Q ss_pred chhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHHHHh
Q 022057 116 ASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFC 152 (303)
Q Consensus 116 p~a~~~~~~~al~~-g-~~vVigTTG~~~e~~~~L~~~a 152 (303)
++...+.+...... . -.+|+-.+.......+.+.+..
T Consensus 68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 88777777665542 1 2255544443344445566554
No 127
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.0026 Score=59.49 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=80.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vI 111 (303)
.+|.|+|. |.|+..+.++... |++||+|++.... +...+++ ..+|||.|.+.|++-+ ++|+ ||
T Consensus 5 ksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVvV 71 (361)
T COG4693 5 KSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVVV 71 (361)
T ss_pred ceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEEE
Confidence 38999996 9999999988876 8999999987532 2334455 4789999999999864 5553 33
Q ss_pred EcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 112 DFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 112 DfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
-.| .-..--+..+..++.|++|+.+-+=. ++++.++.++|++.|....
T Consensus 72 rsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~y~ 120 (361)
T COG4693 72 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL 120 (361)
T ss_pred eeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcEEE
Confidence 333 23444778888899999999886644 4567777777777665533
No 128
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.01 E-value=0.019 Score=48.96 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=52.5
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCCHHHHHhccccCCCccEEEEc
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|.|.|+||.+|+.+++.+.+. ++++.+.+.+.. ...+ ..++.+ ..|.+.+.+.+ .++|+||++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~------~~~~~~~~~d~~d~~~~~~al---~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAED------SPGVEIIQGDLFDPDSVKAAL---KGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHH------CTTEEEEESCTTCHHHHHHHH---TTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccc------ccccccceeeehhhhhhhhhh---hhcchhhhh
Confidence 789999999999999999865 499999875431 1111 112221 23443332221 479999987
Q ss_pred CC-----chhHHHHHHHHHHcCCCeEE
Q 022057 114 TD-----ASTVYDNVKQATAFGMRSVV 135 (303)
Q Consensus 114 T~-----p~a~~~~~~~al~~g~~vVi 135 (303)
.. .+.....+..+.++|++-++
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~v 94 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGVKRVV 94 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred hhhhcccccccccccccccccccccce
Confidence 64 23345555666677765443
No 129
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.99 E-value=0.012 Score=59.50 Aligned_cols=117 Identities=10% Similarity=0.100 Sum_probs=69.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
+.+|+++|. |.||+.++..+.+ .+++|+ ++|++. .....+.......|. ..+.+++++.+++ ..+|+||
T Consensus 6 ~~~IG~IGL-G~MG~~mA~nL~~-~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvIi 77 (493)
T PLN02350 6 LSRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSVI 77 (493)
T ss_pred CCCEEEEee-HHHHHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEEE
Confidence 568999997 9999999999984 688776 678642 222223210001132 2567888887531 3589888
Q ss_pred Ec-CCchhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 112 DF-TDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 112 Df-T~p~a~~~~~---~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
-+ +.++++.+.+ ...++.|. +||-++..+.++..++.+.+++.|+..+
T Consensus 78 ~~v~~~~aV~~Vi~gl~~~l~~G~-iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 78 ILVKAGAPVDQTIKALSEYMEPGD-CIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred EECCCcHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 54 3444555543 33444554 4444443444556667777777676644
No 130
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.99 E-value=0.007 Score=56.39 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=58.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-ecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~-v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|||+|+|+ |.||..++..+.+ .++++. ++|++. ....... ..+ +. ..++.+ .+ .++|+||.+
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~-~~------~~aDlVila 64 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRS-LGHTVY-GVSRRE--STCERAI----ERGLVDEASTDLS-LL------KDCDLVILA 64 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCcccccCCHh-Hh------cCCCEEEEc
Confidence 48999997 9999999998875 467765 466542 1112221 112 11 233443 44 479999999
Q ss_pred CCchhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHH
Q 022057 114 TDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALS 149 (303)
Q Consensus 114 T~p~a~~~~~~~al~~-g-~~vVigTTG~~~e~~~~L~ 149 (303)
+++....+.+...... + ..+|+-+++...+..+.+.
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~ 102 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE 102 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH
Confidence 8888887777655543 2 2344444455554444443
No 131
>PRK08223 hypothetical protein; Validated
Probab=96.97 E-value=0.0068 Score=57.18 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=55.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~~~-----~~g~~~~~gv~v~-- 91 (303)
.-||.|+|| |.+|..+++.+. ..++.=..++|.+. .|+.-.+ +..+.....+.++
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 368999999 999999999887 45766667777421 1111000 1111111222221
Q ss_pred ----CCHHHHHhccccCCCccEEEEcCCc---hhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDfT~p---~a~~~~~~~al~~g~~vVigTT 138 (303)
++.++++ .++|+|||.+.. +.-+..-..|.++|+|+|.+.+
T Consensus 105 ~l~~~n~~~ll------~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 105 GIGKENADAFL------DGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred ccCccCHHHHH------hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 2344555 367777777643 4445555677777777777644
No 132
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.95 E-value=0.0016 Score=57.58 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|||+|+|++|+.|+.+++.+. ..++|+++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeC
Confidence 699999999999999999877 679999999864
No 133
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.94 E-value=0.0083 Score=59.00 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=69.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------C------CCCC-eeecCCHHHHHh
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG 99 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~--------~------~~~g-v~v~~dl~~~l~ 99 (303)
|||+|+|+ |.||..++..+. ..++++++ +|++. .....+. |. . ...+ +..++++++++
T Consensus 1 mkI~vIGl-G~~G~~lA~~La-~~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~- 74 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLA-DLGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAI- 74 (411)
T ss_pred CEEEEECC-CchhHHHHHHHH-hcCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHH-
Confidence 48999997 999999999887 46788765 66531 1111111 00 0 0123 55667888877
Q ss_pred ccccCCCccEEEEcCC-ch---------hHHHHHHH---HHHcCCCeEEeCC---CCCHHHHHHHHHH-h--h-hcCCeE
Q 022057 100 SISQSKARAVVIDFTD-AS---------TVYDNVKQ---ATAFGMRSVVYVP---HIQLETVSALSAF-C--D-KASMGC 159 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT~-p~---------a~~~~~~~---al~~g~~vVigTT---G~~~e~~~~L~~~-a--~-~~~i~v 159 (303)
.++|++|-+.+ |. .+.+.+.. .++.|.-+|..+| |.+++-...+.+. . . ....++
T Consensus 75 -----~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 75 -----RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred -----hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 47999887653 32 13333332 3344555555444 3444332233221 1 0 113588
Q ss_pred EEcCCCcHHHHH
Q 022057 160 LIAPTLSIGSIL 171 (303)
Q Consensus 160 v~a~N~SiGv~l 171 (303)
..+|.|..-..+
T Consensus 150 ~~~Pe~~~~G~~ 161 (411)
T TIGR03026 150 AYNPEFLREGNA 161 (411)
T ss_pred EECCCcCCCCCh
Confidence 999988665443
No 134
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.87 E-value=0.0074 Score=57.61 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=68.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.||+|+|+ |+||+.+++.+.. .+++++...++.. .....+. +.|+.+. +.++++ .++|+|+-..+
T Consensus 4 kkIgiIG~-G~mG~AiA~~L~~-sG~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~------~~ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIGY-GSQGHAQALNLRD-SGLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAI------PQADLIMNLLP 68 (314)
T ss_pred CEEEEEeE-cHHHHHHHHHHHH-CCCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHH------hcCCEEEEeCC
Confidence 57999998 9999999999874 5677655454421 1222111 3455554 467776 47999998888
Q ss_pred chhHHHHHHH-H---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcHH
Q 022057 116 ASTVYDNVKQ-A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (303)
Q Consensus 116 p~a~~~~~~~-a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~SiG 168 (303)
|+...+.+.. . ++.+ .+|+=..|++-+..+ ..-.+ +++++ +.||..--
T Consensus 69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~~---~~~~~-~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFVQ---IVPPK-DVDVVMVAPKGPGT 121 (314)
T ss_pred cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhcc---ccCCC-CCcEEEECCCCCcH
Confidence 8834333222 2 3334 366556698865532 22221 24444 77887754
No 135
>PLN02522 ATP citrate (pro-S)-lyase
Probab=96.84 E-value=0.0071 Score=62.46 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=62.7
Q ss_pred CCCCeeecCCHHHHHhccccCCCccEEEEcCCchhHHH-HHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhhhcCCeEEE
Q 022057 84 QPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYD-NVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 84 ~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~-~~~~al~~g~~vVig-TTG~~~e~~~~L~~~a~~~~i~vv~ 161 (303)
+..++|||++.+|+.++ ..++|+.|.|-+|..+.+ .++.|.+.|++.++- |.|+.+.+..+|.++++++|+. ++
T Consensus 59 ~~~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lI 134 (608)
T PLN02522 59 EEIAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VI 134 (608)
T ss_pred EeeCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EE
Confidence 35689999999999974 236899999998877755 455555679876655 4599887788999999999987 77
Q ss_pred cCCCcHHH
Q 022057 162 APTLSIGS 169 (303)
Q Consensus 162 a~N~SiGv 169 (303)
.|| ++|+
T Consensus 135 GPN-c~Gi 141 (608)
T PLN02522 135 GPA-TVGG 141 (608)
T ss_pred CCC-CCee
Confidence 888 5555
No 136
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.81 E-value=0.0032 Score=55.48 Aligned_cols=123 Identities=12% Similarity=0.142 Sum_probs=65.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhhcCC-CCCCeeecCCHHHHHhcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVCDME-QPLEIPVMSDLTMVLGSI 101 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~ 101 (303)
|||+|+|. |.+|-..+-.++ +.+++++| +|.+. ......++.... .......++|.++.+.
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEECC-CcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 79999997 999999998776 57899887 55321 011112221100 1234566778888763
Q ss_pred ccCCCccEEEEcC-Cc------------hhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhh--cCCeEEEcC
Q 022057 102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDK--ASMGCLIAP 163 (303)
Q Consensus 102 ~~~~~~DVvIDfT-~p------------~a~~~~~~~al~~g~~vVigTT---G~~~e~~~~L~~~a~~--~~i~vv~a~ 163 (303)
++|+++-+- +| +.+.+.+...++.+.-+|+.+| |.+++....+.+.... .+..+.++|
T Consensus 76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 688877543 22 3334455555666777888877 7777554444333221 235677777
Q ss_pred CCcH
Q 022057 164 TLSI 167 (303)
Q Consensus 164 N~Si 167 (303)
=|-.
T Consensus 152 Erl~ 155 (185)
T PF03721_consen 152 ERLR 155 (185)
T ss_dssp ----
T ss_pred CccC
Confidence 6644
No 137
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.81 E-value=0.015 Score=53.86 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=55.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|||+|+|+ |.||+.++..+.+..- .++. ++|++. ....... ..|+. ...+++++. ++|+||-+
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vila 65 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVY-GYDHNE--LHLKKAL----ELGLVDEIVSFEELK-------KCDVIFLA 65 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEE-EEcCCH--HHHHHHH----HCCCCcccCCHHHHh-------cCCEEEEe
Confidence 48999997 9999999999875421 3444 466542 1111111 23332 234666653 48999999
Q ss_pred CCchhHHHHHHHHHH--cCCCeEEeCCCCCH
Q 022057 114 TDASTVYDNVKQATA--FGMRSVVYVPHIQL 142 (303)
Q Consensus 114 T~p~a~~~~~~~al~--~g~~vVigTTG~~~ 142 (303)
++|+...+.+..... .+. +|+- .|.+.
T Consensus 66 vp~~~~~~~~~~l~~l~~~~-iv~d-~gs~k 94 (275)
T PRK08507 66 IPVDAIIEILPKLLDIKENT-TIID-LGSTK 94 (275)
T ss_pred CcHHHHHHHHHHHhccCCCC-EEEE-Cccch
Confidence 999888887776543 232 5554 44443
No 138
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.79 E-value=0.0027 Score=60.68 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=63.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
-+++|+|+ |.+|+.++..+....+++.+.+++++. ..+.+++.. ...++ +..++|+++++ .++|+||-
T Consensus 128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~aDiVi~ 198 (325)
T PRK08618 128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAI------EEADIIVT 198 (325)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHH------hcCCEEEE
Confidence 57999998 999999999887777899999998753 222222210 01223 44578999988 47999997
Q ss_pred cCCchhHHHHHHHHHHcCCCeE-EeC
Q 022057 113 FTDASTVYDNVKQATAFGMRSV-VYV 137 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vV-igT 137 (303)
+|+ ..+.-.- .+++.|++|. +|+
T Consensus 199 aT~-s~~p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VTN-AKTPVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred ccC-CCCcchH-HhcCCCcEEEecCC
Confidence 763 3344344 7889999985 454
No 139
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.74 E-value=0.017 Score=54.54 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=76.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT- 114 (303)
+||+.+|. |.||.-+++.+.+ .++++. ++|++. ..+.+++ ...|.....+..++. ..+|+||-+=
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~-aG~~v~-v~~r~~--~ka~~~~---~~~Ga~~a~s~~eaa------~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLK-AGHEVT-VYNRTP--EKAAELL---AAAGATVAASPAEAA------AEADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHH-CCCEEE-EEeCCh--hhhhHHH---HHcCCcccCCHHHHH------HhCCEEEEecC
Confidence 48999996 9999999999884 677766 577642 1112222 245777788887777 4799998754
Q ss_pred CchhHHHHHH---HHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 115 DASTVYDNVK---QATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 115 ~p~a~~~~~~---~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
.++.+.+.+. -.++ .|.-+|- .+..+++..+++.+..++.|...+=+|
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence 4445555553 2333 3555554 445667788899999999988877555
No 140
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.74 E-value=0.013 Score=55.23 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=65.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------cCCHHHHHhccccCCCcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA 108 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D 108 (303)
|||.|.|++|.+|+.+++.+.+ .++++.++..... ....+. ..++.+ ..++.+++ .++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al------~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSF------KGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHH------CCCC
Confidence 4899999999999999999885 5789887764321 111111 112222 12344555 4789
Q ss_pred EEEEcCCch-------------hHHHHHHHHHHcCCC-eEE-eCCC-----CCH--HHHHHHHHHhhhcCCeEEE
Q 022057 109 VVIDFTDAS-------------TVYDNVKQATAFGMR-SVV-YVPH-----IQL--ETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 109 VvIDfT~p~-------------a~~~~~~~al~~g~~-vVi-gTTG-----~~~--e~~~~L~~~a~~~~i~vv~ 161 (303)
+||.+.... .....++.|.++|+. +|. ++.| .++ +...+.+++.++.++++.+
T Consensus 67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ti 141 (317)
T CHL00194 67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTI 141 (317)
T ss_pred EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEE
Confidence 999875321 224556777788864 443 3322 111 1233456666777776543
No 141
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.71 E-value=0.01 Score=54.53 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
..||.|+|+ |.+|..+++.+.. .++.=..++|.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAA-AGVGNLTLLDF 56 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 468999998 9999999998874 57666667775
No 142
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.71 E-value=0.0091 Score=57.56 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=56.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-------chh-----------hhhcCCCCCCeeec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-------DIG-----------MVCDMEQPLEIPVM 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g~-------d~~-----------~~~g~~~~~gv~v~ 91 (303)
..||.|+|+ |.+|..+++.+. ..++.-+.++|.+.. .+ |++ .+..+.....+..+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 468999998 999999999887 467766667885321 11 110 00001011122111
Q ss_pred ------CCHHHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeC
Q 022057 92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 92 ------~dl~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigT 137 (303)
.++++++ .++|+|||.+..... .-.-..|.++|+|+|.+.
T Consensus 102 ~~~~~~~~~~~~~------~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 102 VTDVTVEELEELV------KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred eccCCHHHHHHHh------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2344555 468888888854444 334467788888888764
No 143
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.70 E-value=0.0055 Score=57.72 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=56.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh-------hcCCCC--------CCeeecCCHHHHHh
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV-------CDMEQP--------LEIPVMSDLTMVLG 99 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~-------~g~~~~--------~gv~v~~dl~~~l~ 99 (303)
+.||+|+|+ |.||..++..+.. .+++++. +|++. .....+ .+...+ ..+..++|+++++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDVME--GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV- 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh-
Confidence 568999998 9999999998874 5777765 66432 111110 010000 0134566787776
Q ss_pred ccccCCCccEEEEcCCchh--HHHHHHHH---HHcCCCeEEeCCCCCHHH
Q 022057 100 SISQSKARAVVIDFTDAST--VYDNVKQA---TAFGMRSVVYVPHIQLET 144 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT~p~a--~~~~~~~a---l~~g~~vVigTTG~~~e~ 144 (303)
.++|+||.+..++. ..+.+... +..+.-+++-|.|.+.++
T Consensus 78 -----~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~ 122 (311)
T PRK06130 78 -----SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA 122 (311)
T ss_pred -----ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 47999998886653 23333322 223333334555776543
No 144
>PLN02858 fructose-bisphosphate aldolase
Probab=96.70 E-value=0.021 Score=64.42 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=75.7
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
++.||+++|. |.||..+++.+.. .++++. ++|++. .....+. ..|.....++.++.+ ++|+||-+
T Consensus 323 ~~~~IGfIGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~ 387 (1378)
T PLN02858 323 PVKRIGFIGL-GAMGFGMASHLLK-SNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM 387 (1378)
T ss_pred CCCeEEEECc-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence 4678999997 9999999999874 578775 567642 2223333 235555678888874 78998865
Q ss_pred CC-chhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhh--cCCeEEEcC
Q 022057 114 TD-ASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAP 163 (303)
Q Consensus 114 T~-p~a~~~~~~------~al~~g~~vVigTTG~~~e~~~~L~~~a~~--~~i~vv~a~ 163 (303)
-. |+.+.+.+. ..++.|. +|+-.+..+++..+++.+.+++ .|+..+=+|
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 54 666665542 1223444 5555555567777788887777 777766666
No 145
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.68 E-value=0.01 Score=51.79 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
||+|+|+ |.||..+++.+.. .++.=+-++|.
T Consensus 1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDF 31 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 6899998 9999999998874 56654556774
No 146
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.68 E-value=0.022 Score=52.63 Aligned_cols=130 Identities=13% Similarity=0.160 Sum_probs=83.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE-ecCCCCcchhhhhcCCCCCCeee--cC---CHHHHHhccccCCCc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-DSHSVGEDIGMVCDMEQPLEIPV--MS---DLTMVLGSISQSKAR 107 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v-d~~~~g~d~~~~~g~~~~~gv~v--~~---dl~~~l~~~~~~~~~ 107 (303)
|+++|.|+|.| .=++.+++.+...+...++... ++ |.+..+. ...+.+ +. -+.+.+.+ .++
T Consensus 1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~---g~~l~~~-----~~~~~~~G~l~~e~l~~~l~e----~~i 67 (257)
T COG2099 1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGY---GAKLAEQ-----IGPVRVGGFLGAEGLAAFLRE----EGI 67 (257)
T ss_pred CCceEEEEecc-HHHHHHHHHhhccCccEEEEEcccc---cccchhc-----cCCeeecCcCCHHHHHHHHHH----cCC
Confidence 46889999985 7789999999888754444322 22 1111110 111111 12 33445543 789
Q ss_pred cEEEEcCCchhH---HHHHHHHHHcCCCeE-EeCCCCCH--------HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057 108 AVVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 108 DVvIDfT~p~a~---~~~~~~al~~g~~vV-igTTG~~~--------e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
|++||.|||-+. ...++.|-+.|+|.+ -+-|+|.. ++.+++.+++++.+-.++. .+|.+-|..|
T Consensus 68 ~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f 143 (257)
T COG2099 68 DLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHF 143 (257)
T ss_pred CEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHH
Confidence 999999999766 556788999999988 34455543 4556677777776666775 7888777777
Q ss_pred HHHhc
Q 022057 176 AISAS 180 (303)
Q Consensus 176 a~~~~ 180 (303)
.+...
T Consensus 144 ~~~~~ 148 (257)
T COG2099 144 VAADA 148 (257)
T ss_pred hcCcc
Confidence 65443
No 147
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.67 E-value=0.031 Score=50.48 Aligned_cols=160 Identities=12% Similarity=0.152 Sum_probs=104.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
||||+|+.. |.-|...++.+... -.-+++++.+.+. ... ...+..++.|..+ .++|++|-+
T Consensus 1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~~-----------~fie~P~~~Lp~~---~e~Di~va~ 62 (224)
T COG1810 1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---ELP-----------DFIEEPEDLLPKL---PEADIVVAY 62 (224)
T ss_pred CcEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---ccc-----------chhhCHHHhcCCC---CCCCEEEEe
Confidence 689999996 99999999988853 2346777776531 111 1124456677532 478999988
Q ss_pred C-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH----HHHHHHHHHHHhccCCCcEEE
Q 022057 114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI----GSILLQQAAISASFHYKNVEI 188 (303)
Q Consensus 114 T-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si----Gv~ll~~~a~~~~~~~~dieI 188 (303)
+ +|+-.++..+.+.+.|...||=-.+-.....++|++.+.+.|+-+..--+|-- |--.+.+|+..+.+-...+|+
T Consensus 63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev 142 (224)
T COG1810 63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEV 142 (224)
T ss_pred ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEe
Confidence 7 89999999999988887655532222234567788888887766543333310 122478888877543323332
Q ss_pred EEcc----CCCCCCCcHHHHHHHHHHHh
Q 022057 189 VESR----PNARDFPSPDATQIANNLSN 212 (303)
Q Consensus 189 iE~H----h~K~DaPSGTA~~l~~~i~~ 212 (303)
-+-- +-++.||=|.+.-+|+.+.-
T Consensus 143 ~~~~i~~V~V~RsaPCGsT~~vAk~l~G 170 (224)
T COG1810 143 ENGKIKDVDVLRSAPCGSTWYVAKRLVG 170 (224)
T ss_pred cCCeEEEEEEEecCCCchHHHHHHHhcC
Confidence 2211 23789999999999998743
No 148
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.66 E-value=0.029 Score=54.76 Aligned_cols=71 Identities=20% Similarity=0.117 Sum_probs=51.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
..||+|+|.+|.||+.+++.+.+..+.++.+ +|+... ...++++.+ .++|+||-++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v------~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLL------QRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHh------cCCCEEEEeC
Confidence 4689999988999999999998655778775 665310 022445555 4688888888
Q ss_pred CchhHHHHHHHHHHc
Q 022057 115 DASTVYDNVKQATAF 129 (303)
Q Consensus 115 ~p~a~~~~~~~al~~ 129 (303)
+++...+.+......
T Consensus 60 Pv~~~~~~l~~l~~~ 74 (370)
T PRK08818 60 PIRHTAALIEEYVAL 74 (370)
T ss_pred CHHHHHHHHHHHhhh
Confidence 888888777766653
No 149
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.66 E-value=0.01 Score=49.89 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=75.3
Q ss_pred eeEEEEcCCcH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
.+|+|+|+|-+ =+-.+.+.++ +.|.++.. +++.. +..++ +|-++|.|+.++- .++|+|.-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViP-VNP~~---~~~ei------LG~k~y~sL~dIp------e~IDiVdv 79 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIP-VNPKL---AGEEI------LGEKVYPSLADIP------EPIDIVDV 79 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEe-eCccc---chHHh------cCchhhhcHHhCC------CCCcEEEE
Confidence 47899998754 4455777666 67899987 34432 22333 4568899999885 58999999
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCC
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i 157 (303)
|-.|+.+.+.++.+++.+..+|-.-.|...++. .+.+++.|.
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea---~~~~~~aG~ 121 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEA---AEKARDAGL 121 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHH---HHHHHHhCc
Confidence 999999999999999999999998888765543 333455444
No 150
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=96.65 E-value=0.0058 Score=58.69 Aligned_cols=97 Identities=25% Similarity=0.209 Sum_probs=60.4
Q ss_pred eEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhhcCCC------CC-Ceeec--C
Q 022057 37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVCDMEQ------PL-EIPVM--S 92 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~g~~~------~~-gv~v~--~ 92 (303)
||+|+|+ ||+||.+.+++.+. +++++|++-|... .|+--+++.-... .. .+.++ .
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 7999998 99999999998876 5899999877310 0110000000000 01 12222 1
Q ss_pred CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
+++++-= .+.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 3333210 01379999999988888899999999997666544
No 151
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.62 E-value=0.012 Score=54.73 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=56.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhhcCC--C-------CCCeeecCCHHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDME--Q-------PLEIPVMSDLTM 96 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---------~~~~~g~~--~-------~~gv~v~~dl~~ 96 (303)
+.||+|+|+ |.||..++..+... +.+++. +|.+..-.+ ...+...+ . ..++.+++|+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 358999998 99999999988754 777775 564310000 00111000 0 013455677765
Q ss_pred HHhccccCCCccEEEEcCCchhH--HHHHHH---HHHcCCCeEEeCCCCCHHH
Q 022057 97 VLGSISQSKARAVVIDFTDASTV--YDNVKQ---ATAFGMRSVVYVPHIQLET 144 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p~a~--~~~~~~---al~~g~~vVigTTG~~~e~ 144 (303)
+ .++|+||.+.+++.. .+.+.. ++..+..+++-|.|++..+
T Consensus 80 -~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~ 125 (282)
T PRK05808 80 -L------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred -h------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 3 479999988764322 233333 3333444444455776654
No 152
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.61 E-value=0.012 Score=55.43 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID 112 (303)
..+|+|+|+ |+||+.+++.+.. -++++. +++++. .+..... ..+... +.++++.+ .++|+||.
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~-~G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDiVin 215 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSA-LGARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKV------AEIDIVIN 215 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHh------ccCCEEEE
Confidence 368999998 9999999998875 467765 566542 1211111 122221 34667776 47999997
Q ss_pred cCCchhHHHHHHHHHHcCCCeEE--e-CCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 113 FTDASTVYDNVKQATAFGMRSVV--Y-VPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVi--g-TTG~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
.++.....+.....++.+. +|+ + .+|-++ + ++|++.|++.+++||.-
T Consensus 216 t~P~~ii~~~~l~~~k~~a-liIDlas~Pg~td-----f-~~Ak~~G~~a~~~~glP 265 (287)
T TIGR02853 216 TIPALVLTADVLSKLPKHA-VIIDLASKPGGTD-----F-EYAKKRGIKALLAPGLP 265 (287)
T ss_pred CCChHHhCHHHHhcCCCCe-EEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCCCC
Confidence 6633322222222233332 332 2 235543 3 67889999999988654
No 153
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.61 E-value=0.023 Score=47.34 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.7
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
||.|+|+ |++|..+++.+. ..++.=+.++|.+
T Consensus 1 ~VliiG~-GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECC-CHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 6899998 999999999987 4666555677753
No 154
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.60 E-value=0.013 Score=58.44 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=77.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC-----------CeeecCCHHHHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-----------EIPVMSDLTMVL 98 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~-----------gv~v~~dl~~~l 98 (303)
..||+|.|+ |++|+..++.+. ..+.+||++.|+ +..|-|..++....... +.. +.+.++++
T Consensus 232 g~rVaIqGf-GnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~ 308 (445)
T PRK09414 232 GKRVVVSGS-GNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW 308 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence 479999998 999999999887 578999999884 23466665443211110 111 12344555
Q ss_pred hccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 99 ~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
. .++||+|-++..... .+++.....++..+|+|-. + .+++..+.| +++ .+++.|-+.
T Consensus 309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~r--GI~~vPD~l 368 (445)
T PRK09414 309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEA--GVLFAPGKA 368 (445)
T ss_pred c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHC--CcEEECchh
Confidence 4 589999998865554 7777777777999999976 3 454432222 333 456667664
No 155
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.59 E-value=0.011 Score=53.52 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=73.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-CCCCeeec-----CCHHHHHhcccc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ 103 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-~~~gv~v~-----~dl~~~l~~~~~ 103 (303)
.+||+|.|+ |++|+.+++.+.+ .+..+|++.|.+ + |-|..++.... ...++..+ .+.++++.
T Consensus 23 g~~vaIqGf-GnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---- 95 (217)
T cd05211 23 GLTVAVQGL-GNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG---- 95 (217)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence 589999997 9999999998874 589999999963 3 55544333110 01122221 12345553
Q ss_pred CCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 104 ~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
.++||+|.++..... +-..+.+.+..+|+|.- .++++. .++ -+++| +++.|-+..
T Consensus 96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a-~~~---L~~~G--i~v~Pd~~~ 152 (217)
T cd05211 96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEA-LRI---LHERG--IVVAPDIVA 152 (217)
T ss_pred -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHH-HHH---HHHCC--cEEEChHHh
Confidence 589999988865543 22334467899999876 355533 222 24434 677787665
No 156
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=96.56 E-value=0.048 Score=49.44 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=101.1
Q ss_pred CcHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-CchhHHH
Q 022057 44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD 121 (303)
Q Consensus 44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~ 121 (303)
.|+-|..+.+.+.+.++++ .+..++.+. ...++ .++.++.|..+ .++|++|..+ +|+..++
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~ 67 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE 67 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence 4889999999999888876 344454331 22222 23445555432 6789999977 8999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCc----HHHHHHHHHHHHhccCCCcEEE-EEcc--
Q 022057 122 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLS----IGSILLQQAAISASFHYKNVEI-VESR-- 192 (303)
Q Consensus 122 ~~~~al~~g~~vVigTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~S----iGv~ll~~~a~~~~~~~~dieI-iE~H-- 192 (303)
..+.+.+.|...||.- +|+. .-.+.|++.+++.|+-+...-.|- -|--.+.+|++.+.+ +-+|| ++--
T Consensus 68 l~~~~~e~g~kavIvp-~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGk--P~~ei~v~~~~I 144 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVP-SESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGK--PKVEIEVENGKI 144 (217)
T ss_pred HHHHHHHcCCCEEEEe-cCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCC--ceEEEEecCCcE
Confidence 9999999999888753 3322 344568888888887766544332 123357888888765 44454 2332
Q ss_pred -C-C-CCCCCcHHHHHHHHHHHh
Q 022057 193 -P-N-ARDFPSPDATQIANNLSN 212 (303)
Q Consensus 193 -h-~-K~DaPSGTA~~l~~~i~~ 212 (303)
. + +++||=|++..+|+.+.-
T Consensus 145 ~~V~VlR~aPCGsT~~vAk~l~G 167 (217)
T PF02593_consen 145 KDVKVLRSAPCGSTWFVAKRLIG 167 (217)
T ss_pred EEEEEEecCCCccHHHHHHHhcC
Confidence 1 3 799999999999998854
No 157
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.55 E-value=0.016 Score=55.01 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=56.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C---------CCCeeecCCHHHHHhc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q---------PLEIPVMSDLTMVLGS 100 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~--~---------~~gv~v~~dl~~~l~~ 100 (303)
|||||+|+|+ |.||..++..+.+ .+.++.. +|++. ....+. |.. . ...+...++.+ .+
T Consensus 1 ~~mkI~IiG~-G~mG~~~A~~L~~-~G~~V~~-~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 71 (341)
T PRK08229 1 MMARICVLGA-GSIGCYLGGRLAA-AGADVTL-IGRAR---IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-AL-- 71 (341)
T ss_pred CCceEEEECC-CHHHHHHHHHHHh-cCCcEEE-EecHH---HHHHHHhcCceeecCCCcceecccceeEeccChh-hc--
Confidence 7889999998 9999999998875 4677765 45421 111111 100 0 00122344543 33
Q ss_pred cccCCCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057 101 ISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL 142 (303)
Q Consensus 101 ~~~~~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~ 142 (303)
.++|+||.++.+....+.+..... .+..++.-+.|+..
T Consensus 72 ----~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 72 ----ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred ----cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 479999988766655555554433 34445545568864
No 158
>PLN02858 fructose-bisphosphate aldolase
Probab=96.53 E-value=0.03 Score=63.11 Aligned_cols=115 Identities=14% Similarity=0.032 Sum_probs=76.1
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
++..||+++|. |.||..+++.+.+ .+++|. ++|++. .....+. +.|+...+++.++.+ .+|+||-
T Consensus 2 ~~~~~IGfIGL-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~ 66 (1378)
T PLN02858 2 QSAGVVGFVGL-DSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVV 66 (1378)
T ss_pred CCCCeEEEEch-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEE
Confidence 34568999997 9999999999884 578875 578652 2223333 346777889999874 6898886
Q ss_pred cC-CchhHHHHH---HHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcC--CeEEEc
Q 022057 113 FT-DASTVYDNV---KQATAFG--MRSVVYVPHIQLETVSALSAFCDKAS--MGCLIA 162 (303)
Q Consensus 113 fT-~p~a~~~~~---~~al~~g--~~vVigTTG~~~e~~~~L~~~a~~~~--i~vv~a 162 (303)
+- .++.+.+.+ .-.++.- -.+|+-++..+++..+++.+.+++.| +..+=+
T Consensus 67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred EcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 54 445555554 1233321 14666666667777888888877777 554433
No 159
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=96.51 E-value=0.0035 Score=60.75 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=30.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhc----CCcEEEEEEec
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS 69 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~----~~~eLvg~vd~ 69 (303)
|++||+|+|+ ||+||.+.+++.+. +++|+|++-|+
T Consensus 2 m~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 2 APIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred CceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 4589999998 99999999998764 68999999873
No 160
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.48 E-value=0.021 Score=54.91 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=60.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.+|+|+|+ |.||+.+++.+. ..+++++....+.. .. ...+ ...|+.+. |.++++ ..+|+|+-..+
T Consensus 18 ktIgIIG~-GsmG~AlA~~L~-~sG~~Vvv~~r~~~--~s-~~~A---~~~G~~~~-s~~eaa------~~ADVVvLaVP 82 (330)
T PRK05479 18 KKVAIIGY-GSQGHAHALNLR-DSGVDVVVGLREGS--KS-WKKA---EADGFEVL-TVAEAA------KWADVIMILLP 82 (330)
T ss_pred CEEEEEee-HHHHHHHHHHHH-HCCCEEEEEECCch--hh-HHHH---HHCCCeeC-CHHHHH------hcCCEEEEcCC
Confidence 68999998 999999999987 46788876544321 11 1112 13455544 788887 47999998888
Q ss_pred chhHHHHH-HHHHH---cCCCeEEeCCCCCHHH
Q 022057 116 ASTVYDNV-KQATA---FGMRSVVYVPHIQLET 144 (303)
Q Consensus 116 p~a~~~~~-~~al~---~g~~vVigTTG~~~e~ 144 (303)
|+...+.+ ...+. .|. +|+=..|++-..
T Consensus 83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~ 114 (330)
T PRK05479 83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHF 114 (330)
T ss_pred HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhh
Confidence 77776665 33333 233 445456887644
No 161
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.48 E-value=0.049 Score=54.81 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=66.3
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
+|+++|. |.||+.+++.+.+ .+++|+ ++|++. .....+..... ..++..+.+++++.+++ .++|+||-+-+
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence 4899997 9999999999985 577765 577642 22223321100 01255567888876531 36898887665
Q ss_pred c-hhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 022057 116 A-STVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 159 (303)
Q Consensus 116 p-~a~~~~~~~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~v 159 (303)
+ +.+.+.+.. +++.|.-+|-++|....+..+...+ .++.|+..
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~f 119 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGILF 119 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCEE
Confidence 5 444554433 3445655665666554443344444 44556653
No 162
>PRK06091 membrane protein FdrA; Validated
Probab=96.46 E-value=0.015 Score=59.31 Aligned_cols=75 Identities=8% Similarity=0.109 Sum_probs=65.0
Q ss_pred CeeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 87 gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
.+|.+.++.++++++ ..+|+++.+.+++.+.+.++.|++.|+++++=+.|+..+..++|.++|+++|+. ++.||=
T Consensus 101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glr-vmGPNC 175 (555)
T PRK06091 101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLL-VMGPDC 175 (555)
T ss_pred CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCE-EECCCC
Confidence 456778888887642 457999999999999999999999999999988899888788999999999977 789998
No 163
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.44 E-value=0.01 Score=56.34 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=49.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..||+|+|+ |.||+.+++.+.. .+..-+.+++++. ..+.+++ .+++.. .++++.+.+ .++|+||.
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVi~ 244 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELA---KELGGNAVPLDELLELL------NEADVVIS 244 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcCCeEEeHHHHHHHH------hcCCEEEE
Confidence 478999998 9999999998875 5555566677642 2222333 123322 234556665 36899998
Q ss_pred cCCchhHHHHHHHHH
Q 022057 113 FTDASTVYDNVKQAT 127 (303)
Q Consensus 113 fT~p~a~~~~~~~al 127 (303)
+|......+.+...+
T Consensus 245 at~~~~~~~~~~~~~ 259 (311)
T cd05213 245 ATGAPHYAKIVERAM 259 (311)
T ss_pred CCCCCchHHHHHHHH
Confidence 886544444444443
No 164
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.43 E-value=0.0083 Score=56.08 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=49.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT- 114 (303)
|||.|+|++|-+|+.+.+.+.+ .++++++. ++.. -|+ .-.+.+.+.+.+ .+||+||.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~dl------------~d~~~~~~~~~~----~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LDL------------TDPEAVAKLLEA----FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-T------------TSHHHHHHHHHH----H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cCC------------CCHHHHHHHHHH----hCCCeEeccce
Confidence 7999999999999999998875 77888775 4321 111 112234455543 4799999975
Q ss_pred ---------Cchh--------HHHHHHHHHHcCCCeEE
Q 022057 115 ---------DAST--------VYDNVKQATAFGMRSVV 135 (303)
Q Consensus 115 ---------~p~a--------~~~~~~~al~~g~~vVi 135 (303)
.|+. ....++.|.++|.++|-
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~ 98 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIH 98 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEE
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEE
Confidence 2322 23456777889988873
No 165
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.39 E-value=0.0042 Score=59.92 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=30.9
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
|++||+|+|+ ||+||.+.+.+.+.+++|+|++=|
T Consensus 1 m~~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 1 LPITVGINGF-GPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred CCeEEEEECC-ChHHHHHHHHHHhcCCcEEEEecC
Confidence 5589999998 999999999988788999999876
No 166
>PRK08328 hypothetical protein; Provisional
Probab=96.36 E-value=0.025 Score=51.52 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=26.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
..||.|+|+ |..|..+++.+.. .++.=+-++|.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~-~Gvg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAA-AGVGRILLIDE 59 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 468999999 9999999998874 56655556774
No 167
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.33 E-value=0.025 Score=50.89 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=26.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
..||+|+|+ |.||..+++.+.. .++.=+.++|.+
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 368999998 9999999999874 566655567743
No 168
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.32 E-value=0.021 Score=53.98 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=69.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID 112 (303)
..||+|+|+ |++|+.++..+.. -+.++.. +|++. .. .+.+ ...|... +.++.+.+ .++|+||+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~-~Ga~V~v-~~r~~--~~-~~~~---~~~G~~~~~~~~l~~~l------~~aDiVI~ 216 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKA-LGANVTV-GARKS--AH-LARI---TEMGLSPFHLSELAEEV------GKIDIIFN 216 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HH-HHHH---HHcCCeeecHHHHHHHh------CCCCEEEE
Confidence 479999998 9999999998875 5676654 56542 11 1111 1234332 34666676 47999999
Q ss_pred cCCchhHHHHHHHHHHcCCCeE-EeC-CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 113 FTDASTVYDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vV-igT-TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
.+++....+-....++.+.-+| +++ +|-++ + +.+++.|++.++.+|..=++
T Consensus 217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred CCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence 7755433333333344443333 232 24443 2 36788899999999887665
No 169
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.29 E-value=0.04 Score=52.19 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=85.1
Q ss_pred EEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccC
Q 022057 25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS 104 (303)
Q Consensus 25 ~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~ 104 (303)
.+++..+++ +.|||-+|- |.||..++..+.+ .++.|+ ++|+.. ....++. +.|..+.+++.|+.
T Consensus 26 ~~s~~~~~s-~~~iGFIGL-G~MG~~M~~nLik-~G~kVt-V~dr~~--~k~~~f~----~~Ga~v~~sPaeVa------ 89 (327)
T KOG0409|consen 26 AMSSRITPS-KTRIGFIGL-GNMGSAMVSNLIK-AGYKVT-VYDRTK--DKCKEFQ----EAGARVANSPAEVA------ 89 (327)
T ss_pred cccccCCcc-cceeeEEee-ccchHHHHHHHHH-cCCEEE-EEeCcH--HHHHHHH----HhchhhhCCHHHHH------
Confidence 566666655 579999996 9999999999885 577776 577642 1122332 46788889999998
Q ss_pred CCccEEEEc-CCchhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 105 KARAVVIDF-TDASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 105 ~~~DVvIDf-T~p~a~~~~~~~------al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+.+||+|-. +.|..+.+.+.- .+.-|.+..+-.+..+++-..+|.+.++..+...+ -+--|=|+
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v-DAPVSGg~ 160 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV-DAPVSGGV 160 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE-eccccCCc
Confidence 479988763 466666665532 22345555445556677777788888877765544 34445444
No 170
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.28 E-value=0.029 Score=49.96 Aligned_cols=109 Identities=11% Similarity=0.171 Sum_probs=63.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
++|+|+|+ |+||+.+++.+.+ .+++++ ++|.+. ....++. ..++....+ .++++. .++|+++-++.
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~-~G~~Vv-v~D~~~--~~~~~~~---~~~g~~~v~-~~~l~~-----~~~Dv~vp~A~ 94 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLE-EGAKLI-VADINE--EAVARAA---ELFGATVVA-PEEIYS-----VDADVFAPCAL 94 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHH---HHcCCEEEc-chhhcc-----ccCCEEEeccc
Confidence 68999998 9999999998874 688998 677642 2222222 123443333 355553 47999985543
Q ss_pred chhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 116 ASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 116 p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
.... .+++ .+.+.++|++-. + +++.+. .+.-+++| +++.|-|-
T Consensus 95 ~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~---~~~L~~~G--i~~~Pd~~ 140 (200)
T cd01075 95 GGVINDDTI---PQLKAKAIAGAANNQLADPRH---GQMLHERG--ILYAPDYV 140 (200)
T ss_pred ccccCHHHH---HHcCCCEEEECCcCccCCHhH---HHHHHHCC--CEEeCcee
Confidence 3322 4444 345688888865 3 442222 22235544 45556443
No 171
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.23 E-value=0.02 Score=55.74 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=71.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEE---EEEEecCCCCcchhhhhcCCCCCCeeecCCHHH--HHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEV---AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eL---vg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVv 110 (303)
+||||+|+||-+|+.+++.+.+++++.+ ....+....|+.. .+.+ .+ ..+. ++++ .+ .++|++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~--~~--~~v~-~~~~~~~~------~~vDiv 68 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG--TT--GTLQ-DAFDIDAL------KALDII 68 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC--Cc--ceEE-cCcccccc------cCCCEE
Confidence 4899999999999999998887777753 3333322222221 1111 11 1221 2211 23 478998
Q ss_pred EEcCCchhHHHHHHHHHHcCCC-eEEeCCC-C-------------CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057 111 IDFTDASTVYDNVKQATAFGMR-SVVYVPH-I-------------QLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~-vVigTTG-~-------------~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l 171 (303)
+=+...+...+....+.++|.+ +||-.++ | +++ .|... .+.|+.-+..||=|.-..+
T Consensus 69 ffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~---~i~~~-~~~gi~~ianPNCst~~l~ 140 (366)
T TIGR01745 69 ITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQD---VITDG-LNNGIRTFVGGNCTVSLML 140 (366)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHH---HHHhH-HhCCcCeEECcCHHHHHHH
Confidence 8445666678899999999975 5555542 2 233 33332 2345543678998776543
No 172
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.19 E-value=0.0099 Score=56.40 Aligned_cols=86 Identities=21% Similarity=0.185 Sum_probs=61.3
Q ss_pred EecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC------CchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057 67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI 140 (303)
Q Consensus 67 vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT------~p~a~~~~~~~al~~g~~vVigTTG~ 140 (303)
+|++..|++++++.+. ..++|++++++++ . ..+|++|--. .|+...+.+..|+++|+++|.|---+
T Consensus 1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~ 72 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF 72 (301)
T ss_dssp E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence 5777789999999985 3899999999999 3 5899888632 47888999999999999999875432
Q ss_pred CHHHHHHHHHHhhhcCCeEEE
Q 022057 141 QLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 141 ~~e~~~~L~~~a~~~~i~vv~ 161 (303)
-.+..+|.++|+++|+.++=
T Consensus 73 -L~ddpel~~~A~~~g~~i~D 92 (301)
T PF07755_consen 73 -LSDDPELAAAAKKNGVRIID 92 (301)
T ss_dssp -HCCHHHHHCCHHCCT--EEE
T ss_pred -hccCHHHHHHHHHcCCeEee
Confidence 23446789999999888764
No 173
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.19 E-value=0.043 Score=51.28 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=26.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
.||+|+|+ |.||..++..+.. .+++++ ++|++
T Consensus 5 ~kI~vIGa-G~mG~~iA~~la~-~G~~V~-l~d~~ 36 (292)
T PRK07530 5 KKVGVIGA-GQMGNGIAHVCAL-AGYDVL-LNDVS 36 (292)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-CCCeEE-EEeCC
Confidence 68999998 9999999998874 577776 46753
No 174
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=96.18 E-value=0.056 Score=49.81 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=60.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----C-----------CCcchhh-----hhcCCCCCCeee----
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----S-----------VGEDIGM-----VCDMEQPLEIPV---- 90 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~-----------~g~d~~~-----~~g~~~~~gv~v---- 90 (303)
-+|.|+|. |++|+..++++.. .++.=.-.+|.+ . .|+.--+ +..+.....|..
T Consensus 31 ~~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 31 AHVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred CcEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 37999998 9999999999884 565444456521 1 1211100 111112223322
Q ss_pred --cCCHHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEe
Q 022057 91 --MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 91 --~~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVig 136 (303)
-+++++++. .++|.|||+.. -.+=.+.+.+|.++++|+|..
T Consensus 109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 236677775 58999999984 444578889999999998853
No 175
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.17 E-value=0.041 Score=54.90 Aligned_cols=122 Identities=10% Similarity=0.096 Sum_probs=71.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC---Cc-------------c---hhhhhc-CCC-CCCeeec-
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GE-------------D---IGMVCD-MEQ-PLEIPVM- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~-------------d---~~~~~g-~~~-~~gv~v~- 91 (303)
+.||+|.|+||-+|+..++.+.+.|+ +++++....... .. + ..++-. +.. ..+..++
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 47999999999999999999888765 889887653211 00 0 000000 000 0012332
Q ss_pred --CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 92 --~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
+.+.++.. ..++|+||..-.--+...-...|+++|+.|....--.--.-=+.|.++++++|+.++
T Consensus 137 G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il 203 (454)
T PLN02696 137 GEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL 203 (454)
T ss_pred CHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe
Confidence 24555554 256899997766655555568889999998875421000011235566666665544
No 176
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.045 Score=51.36 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=55.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhhcCCC---------CCCeeecCCHHHH
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVCDMEQ---------PLEIPVMSDLTMV 97 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~g~~~---------~~gv~v~~dl~~~ 97 (303)
-||+|+|+ |.||+.++..++ ..+++++ ++|.+....+. ..+...+. ...+.+.+|+++
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 48999998 999999999877 4588866 46643100000 00111000 012335677754
Q ss_pred HhccccCCCccEEEEcCCch-----hHHHHHHHHH-HcCCCeEEeCCCCCHHHH
Q 022057 98 LGSISQSKARAVVIDFTDAS-----TVYDNVKQAT-AFGMRSVVYVPHIQLETV 145 (303)
Q Consensus 98 l~~~~~~~~~DVvIDfT~p~-----a~~~~~~~al-~~g~~vVigTTG~~~e~~ 145 (303)
+ .++|+||++-.-+ .+...+..++ ..+..++.-|+++...++
T Consensus 82 ~------~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 82 F------ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred h------CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 4 4789999875322 1222333333 445555555567766543
No 177
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.015 Score=55.49 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=71.0
Q ss_pred cCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC------CchhHHHHHHHHHHcC
Q 022057 58 ARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFG 130 (303)
Q Consensus 58 ~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT------~p~a~~~~~~~al~~g 130 (303)
.+.+++++++|+...+.+.. ++.+ ...++|+.+|.+++++. ..|++|.-. .|+...+.++.|+++|
T Consensus 25 ~~~~~iv~vvD~~~~~~~~~~~l~~--~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~~i~eAl~~G 97 (339)
T COG3367 25 SEKYAIVAVVDRREAGDDTPRELGG--DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWREYIVEALEAG 97 (339)
T ss_pred cccceeeeEEeeeccccccHHHhCC--ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHHHHHHHHHhC
Confidence 44589999999877664443 4444 46899999999999973 458777643 3677889999999999
Q ss_pred CCeEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 022057 131 MRSVVYVPHIQLETVSALSAFCDKASMGC 159 (303)
Q Consensus 131 ~~vVigTTG~~~e~~~~L~~~a~~~~i~v 159 (303)
++||.|---+ -++..++.++|++.|+.+
T Consensus 98 ~nVvsglh~~-ls~dp~~~k~A~~~G~rl 125 (339)
T COG3367 98 MNVVSGLHSF-LSDDPEFVKLAERTGVRL 125 (339)
T ss_pred chhhhhhHHH-hhcChHHHHHHHHcCCee
Confidence 9999765444 456678999999988743
No 178
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.085 Score=48.98 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=89.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCC--CCcch------hhhhc-CCCCCCeeecCCHHHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS--VGEDI------GMVCD-MEQPLEIPVMSDLTMV 97 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~--~g~d~------~~~~g-~~~~~gv~v~~dl~~~ 97 (303)
.++|+++|| |.+|+.+.+.+..-. .+.+|++.|.+. ..+|. .+|.. +....+- .-+++++
T Consensus 3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL 79 (364)
T KOG0455|consen 3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL 79 (364)
T ss_pred cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence 578999998 999999998876432 357888887421 11111 11110 0011111 1247777
Q ss_pred HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH--HHHH
Q 022057 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQ 174 (303)
Q Consensus 98 l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~--ll~~ 174 (303)
++.++....+-++||.|......+....+++.|+.++.-.- .|+. ..+.-+.++..+..|-++----++|.- ++.-
T Consensus 80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss-~l~~y~~l~~~~~s~~fi~HEatVGAGLPiIs~ 158 (364)
T KOG0455|consen 80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSS-TLEHYDKLALHSKSPRFIRHEATVGAGLPIISS 158 (364)
T ss_pred HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccc-cHHHHHHHHhcCCCCceEEeeccccCCchhHHH
Confidence 76665567788999999999999999999999999874322 4553 223334444443345555555566653 3333
Q ss_pred HHHHhccCCCcEEEEE
Q 022057 175 AAISASFHYKNVEIVE 190 (303)
Q Consensus 175 ~a~~~~~~~~dieIiE 190 (303)
|-+.++ ....++-||
T Consensus 159 L~eiI~-tGDev~kIe 173 (364)
T KOG0455|consen 159 LNEIIS-TGDEVHKIE 173 (364)
T ss_pred HHHHHh-cCCceeEEE
Confidence 333333 334455454
No 179
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.14 E-value=0.035 Score=52.72 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=28.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
||||.|.|++|-+|+.+++.+.+..+.++++..
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 568999999999999999999876678888753
No 180
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.14 E-value=0.045 Score=49.58 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=66.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-hhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..||.|+|+ |.+|..+++.+.. .++.-+.++|.+.. -.++.. +....+..|-+-...+.+.+.+ -.+++=|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~----~np~~~i~ 94 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRA----INPDVEIE 94 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHH----hCCCCEEE
Confidence 469999998 9999999999874 57766667775311 011100 0000001111111112222322 35565554
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
.-+-....+++...+ .+.++|+.++. +.+....|.++|.+.++|++.+....
T Consensus 95 ~~~~~i~~~~~~~~~-~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 95 AYNERLDAENAEELI-AGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred EecceeCHHHHHHHH-hCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 332222223333322 35788887765 33455678888888888888775544
No 181
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.12 E-value=0.026 Score=54.20 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=60.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-++|+|+|+ |+||+.+++.+.+.-++++.+ +|+... .. . ...+....++++++. .+|+|+-..
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~---~-----~~~~~~~~~l~ell~------~aDvIvl~l 208 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKGYGSDVVA-YDPFPN-AK---A-----ATYVDYKDTIEEAVE------GADIVTLHM 208 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCcc-Hh---H-----HhhccccCCHHHHHH------hCCEEEEeC
Confidence 368999998 999999999885445788765 665421 11 0 112334568999984 799998665
Q ss_pred CchhHHHHH-----HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCC
Q 022057 115 DASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (303)
Q Consensus 115 ~p~a~~~~~-----~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i 157 (303)
+.......+ ...++.|.-+|--++|.-.++ +.|.++.+++.+
T Consensus 209 P~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~i 255 (332)
T PRK08605 209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGLI 255 (332)
T ss_pred CCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCe
Confidence 322222222 223445554444444644333 345555555444
No 182
>PRK07411 hypothetical protein; Validated
Probab=96.09 E-value=0.032 Score=54.78 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=61.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhhcCCCCCCeeecC-
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVMS- 92 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~-------d~~---------~~~g~~~~~gv~v~~- 92 (303)
..||.|+|| |.+|..+++.+. ..|+.=+.++|.+. .++ |++ .+..+.....+..+.
T Consensus 38 ~~~VlivG~-GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 468999999 999999999887 46776667777421 111 111 011111112222221
Q ss_pred -----CHHHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-CC
Q 022057 93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI 140 (303)
Q Consensus 93 -----dl~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G~ 140 (303)
+..+++ .++|+|||++..-.. .-.-..|.+.++|+|.|.. ||
T Consensus 116 ~~~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 116 RLSSENALDIL------APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred ccCHHhHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 233455 479999999854444 4455788999999998765 44
No 183
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.09 E-value=0.038 Score=51.60 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=55.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh--------h---cCC-------CCCCeeecCCHHH
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV--------C---DME-------QPLEIPVMSDLTM 96 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~~--------~---g~~-------~~~gv~v~~dl~~ 96 (303)
.||+|+|+ |.||+.++..+.. .+.++. ++|.+... ..+.+. . .+. ....+..++|+++
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAF-HGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 58999998 9999999998774 577755 45643100 000000 0 000 0124556788888
Q ss_pred HHhccccCCCccEEEEcCCch--hHHHHHHH---HHHcCCCeEEeCCCCCHHH
Q 022057 97 VLGSISQSKARAVVIDFTDAS--TVYDNVKQ---ATAFGMRSVVYVPHIQLET 144 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p~--a~~~~~~~---al~~g~~vVigTTG~~~e~ 144 (303)
++ .++|+||.+.+.+ ...+.+.. ++..+..+++-|++++..+
T Consensus 81 a~------~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 81 AV------KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred Hh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 77 4799999876422 22333333 2333333334455666544
No 184
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.08 E-value=0.034 Score=51.95 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=56.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cC----CC-------CCCeeecCCHH
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DM----EQ-------PLEIPVMSDLT 95 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~----~~-------~~gv~v~~dl~ 95 (303)
-||+|+|+ |.||+.++..+.+ .++++. ++|.+. ..+..+. +. .. ...+..+++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAV-SGFQTT-LVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHh-CCCcEE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 47999998 9999999998874 477766 467531 1111100 00 00 01245567888
Q ss_pred HHHhccccCCCccEEEEcCCchh-HH-HH---HHHHHHcCCCeEEeCCCCCHHHH
Q 022057 96 MVLGSISQSKARAVVIDFTDAST-VY-DN---VKQATAFGMRSVVYVPHIQLETV 145 (303)
Q Consensus 96 ~~l~~~~~~~~~DVvIDfT~p~a-~~-~~---~~~al~~g~~vVigTTG~~~e~~ 145 (303)
+.+ .++|+||.+.+.+. +. .. +...+..+.-+++-|+.++..++
T Consensus 77 ~~~------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l 125 (288)
T PRK09260 77 AAV------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125 (288)
T ss_pred Hhh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 777 47999997764332 12 22 22233334334455667777553
No 185
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.07 E-value=0.072 Score=47.78 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=55.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CCCCCCe--ee-cCCHHHHHhccccCCCcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA 108 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g----~~~~~gv--~v-~~dl~~~l~~~~~~~~~D 108 (303)
|||+|+|++|.||+.++..+.+ .+.+++. ++++. .....+.. .....++ .+ ..+..+.+ .++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~------~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAA------KRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHH------hcCC
Confidence 5899998449999999998875 4677764 45432 11111110 0001121 12 23455665 4789
Q ss_pred EEEEcCCchhHHHHHHHHHH--cCCCeEEeCC-CCC
Q 022057 109 VVIDFTDASTVYDNVKQATA--FGMRSVVYVP-HIQ 141 (303)
Q Consensus 109 VvIDfT~p~a~~~~~~~al~--~g~~vVigTT-G~~ 141 (303)
+||-+..+....+.+..... .+ .+|+-++ |++
T Consensus 71 vVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLA 105 (219)
T ss_pred EEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCce
Confidence 99988888877777655432 24 4555544 654
No 186
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.05 E-value=0.07 Score=53.78 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=67.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCC-------------CCcchhhhhcCCCCCCeeecCCHHHHHhc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~-------------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~ 100 (303)
||||+|+|+ |.+|...+-.+++. .+++++++ |.+. ......++...........++|+++.+
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i-- 76 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV-- 76 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH--
Confidence 579999997 99999999988764 36888875 5310 011222222100011255677787776
Q ss_pred cccCCCccEEEEcC-Cch--------------hHHH---HHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhhcCCeE
Q 022057 101 ISQSKARAVVIDFT-DAS--------------TVYD---NVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC 159 (303)
Q Consensus 101 ~~~~~~~DVvIDfT-~p~--------------a~~~---~~~~al~~g~~vVigTT---G~~~e~~~~L~~~a~~~~i~v 159 (303)
.++|+++-+- +|. .+.+ .+...++.|.-||+.+| |.+++-...|.+.....+..+
T Consensus 77 ----~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v 152 (473)
T PLN02353 77 ----AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI 152 (473)
T ss_pred ----hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence 4789887652 232 1122 22233445777787877 666544444544221112345
Q ss_pred EEcCCC
Q 022057 160 LIAPTL 165 (303)
Q Consensus 160 v~a~N~ 165 (303)
.++|=|
T Consensus 153 ~~~PEr 158 (473)
T PLN02353 153 LSNPEF 158 (473)
T ss_pred EECCCc
Confidence 555544
No 187
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.04 E-value=0.068 Score=52.14 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=50.2
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
.+.||+|+|+.|.||+.++..+.. .++++.+ +|++. .++.++++ .++|+||.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~~-~d~~~-------------------~~~~~~~~------~~aDlVila 149 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVRI-LEQDD-------------------WDRAEDIL------ADAGMVIVS 149 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH-CCCeEEE-eCCCc-------------------chhHHHHH------hcCCEEEEe
Confidence 357999999559999999998875 4666553 44421 02345555 368888877
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPH 139 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG 139 (303)
+++....+.+......+...++..+|
T Consensus 150 vP~~~~~~~~~~l~~l~~~~iv~Dv~ 175 (374)
T PRK11199 150 VPIHLTEEVIARLPPLPEDCILVDLT 175 (374)
T ss_pred CcHHHHHHHHHHHhCCCCCcEEEECC
Confidence 77777677666554433333333333
No 188
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.03 E-value=0.11 Score=54.66 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=63.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID 112 (303)
.||+|+|+ |.||..+++.+.+.. ..++. ++|++. ....... +.|+. ...++++++ .++|+||.
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~~~~------~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRA--KSLELAV----SLGVIDRGEEDLAEAV------SGADVIVL 69 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECCh--hHHHHHH----HCCCCCcccCCHHHHh------cCCCEEEE
Confidence 58999997 999999999988542 24544 467642 1112111 23332 345677776 47899998
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHh
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFC 152 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a 152 (303)
+++|....+.+...... ...+|+-.++....-.+.+++..
T Consensus 70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 88888777776655432 22355544555544445555543
No 189
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.00 E-value=0.05 Score=48.45 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
..||.|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.++.. +... ...|-+-.....+.+.+ -.+++-|
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~-~Gv~~i~lvD~d~ve~sNL~Rq~l~~~-~diG~~Ka~~~~~~l~~----~np~v~i 93 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAG-AGVGTIVIVDDDHVDLSNLQRQILFTE-EDVGRPKVEVAAQRLRE----LNSDIQV 93 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEecCCEEcccchhhhhccCh-hhCCChHHHHHHHHHHH----hCCCCEE
Confidence 468999998 9999999998875 46644456775311 011110 0000 01111111112222221 2455544
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiG 168 (303)
+.-......+++...+ .+.++|+.++.- .+....|.++|++.++|++.+......
T Consensus 94 ~~~~~~i~~~~~~~~~-~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g~~ 148 (202)
T TIGR02356 94 TALKERVTAENLELLI-NNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVGFG 148 (202)
T ss_pred EEehhcCCHHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeccCe
Confidence 3222111123333333 356788777643 334456778888888888876655433
No 190
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.00 E-value=0.061 Score=47.83 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=62.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCC-CCCCeeecCCHHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDME-QPLEIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
..||.|+|+ |.+|..+++.+. ..++.=+-++|.+... .+... +.... ...|-+-.....+.+.+ -.||+-
T Consensus 19 ~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~----lNp~v~ 92 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE----LNPNVK 92 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH----HCCCCE
Confidence 468999998 889999999987 5687766778854210 11110 00000 00111111111222222 355654
Q ss_pred EEcC--CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 111 IDFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 111 IDfT--~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
|..- .+....+...... ...++|+.++.- .+....+.++|++.++|++.+....
T Consensus 93 i~~~~~~~~~~~~~~~~~~-~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 93 LSIVEEDSLSNDSNIEEYL-QKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred EEEEecccccchhhHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4321 1111122222222 245777766543 4455667777777777777765543
No 191
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.99 E-value=0.039 Score=53.49 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh----h-----hhcCCCCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG----M-----VCDMEQPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~-------d~~----~-----~~g~~~~~gv~v~-- 91 (303)
..||.|+|+ |.+|..+++.+. ..++.=..++|.+. ..+ |.+ + +..+.....+..+
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 469999999 999999999887 56776667777421 111 111 0 1011112222221
Q ss_pred ----CCHHHHHhccccCCCccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTT 138 (303)
.+..+++ .++|+|||++.. +.-.-.-..|.++++|+|.|-.
T Consensus 106 ~i~~~~~~~~~------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 106 RLTWSNALDEL------RDADVILDGSDNFDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 1233455 479999999844 4334455789999999998643
No 192
>PRK06046 alanine dehydrogenase; Validated
Probab=95.98 E-value=0.015 Score=55.58 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=61.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
..+|+|+|+ |.+|+.+++.+...++++.+.++|++. ..+..++.. .+.++ +.+++|+++++ . +|+|+
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv 198 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV 198 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence 368999998 999999999998888999999999753 122222210 01234 45678999887 3 89999
Q ss_pred EcCCchhHHHHH-HHHHHcCCCeE-Ee
Q 022057 112 DFTDASTVYDNV-KQATAFGMRSV-VY 136 (303)
Q Consensus 112 DfT~p~a~~~~~-~~al~~g~~vV-ig 136 (303)
.+|+... +.+ ...++.|.+|. ||
T Consensus 199 ~aTps~~--P~~~~~~l~~g~hV~~iG 223 (326)
T PRK06046 199 TTTPSRK--PVVKAEWIKEGTHINAIG 223 (326)
T ss_pred EecCCCC--cEecHHHcCCCCEEEecC
Confidence 8875322 222 23457888875 55
No 193
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.98 E-value=0.036 Score=51.87 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=26.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
+.||+|+|+ |.||..++..+.. .+++++ ++|++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~ 36 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAA-AGMDVW-LLDSD 36 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence 358999998 9999999998874 578776 46753
No 194
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.97 E-value=0.082 Score=49.92 Aligned_cols=73 Identities=23% Similarity=0.204 Sum_probs=45.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchh--------hhhcCCC---------CCCeeecCCHHH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIG--------MVCDMEQ---------PLEIPVMSDLTM 96 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~--------~~~g~~~---------~~gv~v~~dl~~ 96 (303)
++||+|+|+ |.||..++..+.. .+++++ ++|++.. ...+. .+...+. ...+....|+++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence 358999997 9999999998875 477766 4675420 00000 0111000 011356778888
Q ss_pred HHhccccCCCccEEEEcCCc
Q 022057 97 VLGSISQSKARAVVIDFTDA 116 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p 116 (303)
++ .++|+||.+.+.
T Consensus 79 a~------~~ad~Vi~avpe 92 (308)
T PRK06129 79 AV------ADADYVQESAPE 92 (308)
T ss_pred hh------CCCCEEEECCcC
Confidence 87 479999977643
No 195
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.045 Score=52.22 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=77.6
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccch--------hhhhcCCCCCCe--ee
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDI--------GMVCDMEQPLEI--PV 90 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~----------------g~d~--------~~~~g~~~~~gv--~v 90 (303)
-|.|+|| |.+|+.++..+. ..|++=+-++|.+.. |.+- ..++-+ .+... ..
T Consensus 76 yVVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw-~eIdar~~l 152 (430)
T KOG2018|consen 76 YVVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW-CEIDARNML 152 (430)
T ss_pred EEEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc-ceecHHHhh
Confidence 4899999 999999999887 578887888873211 1110 111111 01111 11
Q ss_pred --cCCHHHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeCCC----------------------CCHHHH
Q 022057 91 --MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPH----------------------IQLETV 145 (303)
Q Consensus 91 --~~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigTTG----------------------~~~e~~ 145 (303)
.++-++++. .+||.|||+- +-+.-.+.+.+|-.+|++|+..| | ++..-.
T Consensus 153 ~~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~-GaaaksDPTrv~v~Dis~t~~DPlsR~vR 226 (430)
T KOG2018|consen 153 WTSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST-GAAAKSDPTRVNVADISETEEDPLSRSVR 226 (430)
T ss_pred cCCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc-CccccCCCceeehhhccccccCcHHHHHH
Confidence 235566664 6899999987 55667899999999999988654 2 122234
Q ss_pred HHHHHHhhhcCCeEEEcCCC
Q 022057 146 SALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 146 ~~L~~~a~~~~i~vv~a~N~ 165 (303)
.+|+..--..|+|+++|.-.
T Consensus 227 rrLrk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 227 RRLRKRGIEGGIPVVFSLEK 246 (430)
T ss_pred HHHHHhccccCCceEEecCC
Confidence 45666666678999986543
No 196
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.94 E-value=0.023 Score=50.80 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLv 64 (303)
|||+|+|++|+||+.+++.+. +.|+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence 589999999999999999876 4577754
No 197
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.92 E-value=0.027 Score=52.95 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=54.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT- 114 (303)
|||.|.|++|.+|+.+.+.+. ++.++++.-..+ .++.-.+.+.+++.+ .+||+||.+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence 459999999999999999876 778888743221 222333456677764 6899999863
Q ss_pred ---------Cch--------hHHHHHHHHHHcCCCeE
Q 022057 115 ---------DAS--------TVYDNVKQATAFGMRSV 134 (303)
Q Consensus 115 ---------~p~--------a~~~~~~~al~~g~~vV 134 (303)
.|+ .....++.|.+.|.++|
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV 96 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV 96 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence 222 23446678888888877
No 198
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.14 Score=51.51 Aligned_cols=133 Identities=23% Similarity=0.203 Sum_probs=74.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC--CHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVvIDf 113 (303)
.||.|+|. |+.|...++.+. ..+.++++ .|... .....+ .+.|+.+.. ...+.+ .++|+||..
T Consensus 13 ~~v~V~G~-G~sG~aa~~~L~-~~G~~v~~-~D~~~--~~~~~l----~~~g~~~~~~~~~~~~l------~~~D~VV~S 77 (488)
T PRK03369 13 APVLVAGA-GVTGRAVLAALT-RFGARPTV-CDDDP--DALRPH----AERGVATVSTSDAVQQI------ADYALVVTS 77 (488)
T ss_pred CeEEEEcC-CHHHHHHHHHHH-HCCCEEEE-EcCCH--HHHHHH----HhCCCEEEcCcchHhHh------hcCCEEEEC
Confidence 58999998 999999998655 67788776 77432 111111 134554432 233444 368999876
Q ss_pred CC-chhHHHHHHHHHHcCCCeE---------------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 114 TD-ASTVYDNVKQATAFGMRSV---------------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 114 T~-p~a~~~~~~~al~~g~~vV---------------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+- |.. .+.+..|.+.|+|++ ||-||-+-. -..-|..+-++.+.+.....| +|.
T Consensus 78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~ 154 (488)
T PRK03369 78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS 154 (488)
T ss_pred CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence 52 332 344555555444433 444543211 122344455556666676777 666
Q ss_pred HHHHHHHHHhccCCCcEEEEEc
Q 022057 170 ILLQQAAISASFHYKNVEIVES 191 (303)
Q Consensus 170 ~ll~~~a~~~~~~~~dieIiE~ 191 (303)
.++..+ . ...|+-++|.
T Consensus 155 p~~~~~----~-~~~~~~VlE~ 171 (488)
T PRK03369 155 PVLDVL----D-EPAELLAVEL 171 (488)
T ss_pred HHHHhc----c-CCCCEEEEEC
Confidence 654422 2 2356777886
No 199
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.91 E-value=0.13 Score=49.84 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=59.4
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCCCccEEEEcC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
||+|+|. |.||..++..+.+ .++++. +++++....+..... ..++. ..+++++++ .++|+||-++
T Consensus 2 ~I~iIG~-GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~------~~aDlVilav 68 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAA------AEADLIVLAV 68 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHh------cCCCEEEEeC
Confidence 6999997 9999999999875 344443 344322111111111 12221 245677776 4799999899
Q ss_pred CchhHHHHHHHHHH--cCC-CeEEeCCCCCHHHHHHHHHH
Q 022057 115 DASTVYDNVKQATA--FGM-RSVVYVPHIQLETVSALSAF 151 (303)
Q Consensus 115 ~p~a~~~~~~~al~--~g~-~vVigTTG~~~e~~~~L~~~ 151 (303)
+|....+.+..... ... .+|+-.++...+..+.+.+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 88887777776654 222 34433334444444455544
No 200
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.89 E-value=0.047 Score=53.62 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=60.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh----h-----hhcCCCCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG----M-----VCDMEQPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~~----~-----~~g~~~~~gv~v~-- 91 (303)
..||.|+|+ |.+|..+++.+. ..++.=+.++|.+ ..+ .|.+ + +..+.....+..+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 468999999 999999999887 4566656677732 111 1111 1 1111111222211
Q ss_pred ----CCHHHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigTT 138 (303)
.+..+++ .++|+|||++ +++.-...-+.|.++++|+|.|.+
T Consensus 120 ~i~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 120 RLDPSNAVELF------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred cCChhHHHHHH------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1234455 4799999998 454445566889999999998755
No 201
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.88 E-value=0.055 Score=52.71 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=26.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
..||.|+|+ |..|..+++.+. ..++.=+-++|.+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La-~~Gvg~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLA-AAGVGTLGIVDHD 168 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 468999998 999999999887 4566555567753
No 202
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.88 E-value=0.055 Score=52.85 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh----h-----hhcCCCCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG----M-----VCDMEQPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~~----~-----~~g~~~~~gv~v~-- 91 (303)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.+ ..++ |++ + +..+.....+..+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~-~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 468999998 9999999999884 565445567632 1111 110 0 1111111222222
Q ss_pred ----CCHHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTT 138 (303)
.+.++++ .++|+|||++. .++-.-.-..|.++++|+|.+..
T Consensus 119 ~i~~~~~~~~~------~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELL------NGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 2344566 47999999985 44445556789999999998754
No 203
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.85 E-value=0.11 Score=51.26 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=27.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
++||+|+|. |.||..++..+.+ .++++++ +|.+
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~-~G~~V~~-~D~~ 35 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFAS-RQKQVIG-VDIN 35 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHh-CCCEEEE-EeCC
Confidence 479999997 9999999998874 5788775 6653
No 204
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.85 E-value=0.034 Score=55.63 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=30.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhc----CCcEEEEEEe
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID 68 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~----~~~eLvg~vd 68 (303)
.+.||+|+|+ ||+||.+++.+.+. ++++|+++.+
T Consensus 126 ~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~ 163 (477)
T PRK08289 126 EPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVV 163 (477)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence 3689999998 99999999998766 5899999975
No 205
>PLN03139 formate dehydrogenase; Provisional
Probab=95.84 E-value=0.058 Score=53.03 Aligned_cols=65 Identities=22% Similarity=0.105 Sum_probs=46.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |+||+.+++.+. .-++++.+ +|+.. .+.. .. ...++....++++++. .+|+|+-..
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~-afG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~l 263 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLK-PFNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVINT 263 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHH-HCCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEeC
Confidence 368999997 999999999887 47899875 67642 1111 11 1345555678999984 799988654
No 206
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.81 E-value=0.017 Score=48.16 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=45.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
.-|+.|+|+ |+||+.++..+... +++=+-+++++. ..+.+++.... ...+.-++++.+.+. ++|+||.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI~ 81 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVIN 81 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEEE
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEEE
Confidence 368999998 99999999998865 766556677652 22333331101 122333667777763 7999998
Q ss_pred cCC
Q 022057 113 FTD 115 (303)
Q Consensus 113 fT~ 115 (303)
+|+
T Consensus 82 aT~ 84 (135)
T PF01488_consen 82 ATP 84 (135)
T ss_dssp -SS
T ss_pred ecC
Confidence 874
No 207
>PLN02778 3,5-epimerase/4-reductase
Probab=95.76 E-value=0.071 Score=50.02 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.9
Q ss_pred ecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEE
Q 022057 28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG 65 (303)
Q Consensus 28 ~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg 65 (303)
+..|..+.|||.|.|++|-+|+.+++.+.+ .+.+++.
T Consensus 2 ~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~~ 38 (298)
T PLN02778 2 NGTAGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFHY 38 (298)
T ss_pred CCCCCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEEE
Confidence 345666778999999999999999998875 4667753
No 208
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.76 E-value=0.056 Score=49.99 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=76.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----c---CCHHHHHhccccCCC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA 106 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~ 106 (303)
||++|.|+|.| .=|+.+++.+.+. +..++.-+..+. |. . ...++++ + .++.+.+.+ .+
T Consensus 1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~-------~~~~~~v~~G~l~~~~~l~~~l~~----~~ 65 (248)
T PRK08057 1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-P-------ADLPGPVRVGGFGGAEGLAAYLRE----EG 65 (248)
T ss_pred CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-c-------ccCCceEEECCCCCHHHHHHHHHH----CC
Confidence 67899999985 7799999988754 676665444321 22 1 1122222 2 345556653 78
Q ss_pred ccEEEEcCCchhH---HHHHHHHHHcCCCeEE-eCCCCC---------HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHH
Q 022057 107 RAVVIDFTDASTV---YDNVKQATAFGMRSVV-YVPHIQ---------LETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (303)
Q Consensus 107 ~DVvIDfT~p~a~---~~~~~~al~~g~~vVi-gTTG~~---------~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~ 173 (303)
+++|||.|||-+. ......|.+.|+|.+= .=+.|. -+..++..++..+. -.++. ++|++-|.
T Consensus 66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vll----ttGsk~l~ 140 (248)
T PRK08057 66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVLL----TTGRQPLA 140 (248)
T ss_pred CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEEE----ecCcchHH
Confidence 9999999999655 5566788999999882 222221 01233344444433 35565 78887776
Q ss_pred HHHH
Q 022057 174 QAAI 177 (303)
Q Consensus 174 ~~a~ 177 (303)
.+..
T Consensus 141 ~f~~ 144 (248)
T PRK08057 141 HFAA 144 (248)
T ss_pred HHhh
Confidence 6654
No 209
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.75 E-value=0.056 Score=44.66 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=58.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
.||+|+|+ |.+|..+++.+.. .++.=+-++|.+.. ..++... .......|-+-..-+.+.+.+ ..|++=|..
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~np~~~v~~ 76 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQE----INPDVEVEA 76 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHH----HSTTSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHH-hCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHH----hcCceeeee
Confidence 58999998 9999999999885 46655567885321 0111110 000001111111122222322 233333332
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
-+.....++....+ .+.++|+.++.- .+....|.++|++.++|++.+.
T Consensus 77 ~~~~~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 77 IPEKIDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp EESHCSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred eecccccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 21111223333333 356777766543 2334567777777777776654
No 210
>PLN00016 RNA-binding protein; Provisional
Probab=95.74 E-value=0.062 Score=51.90 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCCceeEEEE----cCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCee-ecCCHHH---HH
Q 022057 32 PQSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLTM---VL 98 (303)
Q Consensus 32 ~~~~ikV~V~----G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----~~~~g~~~~~gv~-v~~dl~~---~l 98 (303)
.-|++||.|+ |++|.+|+.+++.+.+ .+.++.++.......... ..+..+ ...++. +..|+.+ ++
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~~~ 126 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPADVKSKV 126 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHHHHhhh
Confidence 3446899999 9999999999999885 578998866432110000 000000 012333 2345544 33
Q ss_pred hccccCCCccEEEEcCC--chhHHHHHHHHHHcCC-CeE
Q 022057 99 GSISQSKARAVVIDFTD--ASTVYDNVKQATAFGM-RSV 134 (303)
Q Consensus 99 ~~~~~~~~~DVvIDfT~--p~a~~~~~~~al~~g~-~vV 134 (303)
. ...+|+||++.. .+.....++.|.+.|+ ++|
T Consensus 127 ~----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 127 A----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred c----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2 247999999864 3445667778888887 455
No 211
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.73 E-value=0.13 Score=47.21 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=62.4
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC---HHHHHhccccCCC-ccEEE
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD---LTMVLGSISQSKA-RAVVI 111 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d---l~~~l~~~~~~~~-~DVvI 111 (303)
+|.|.|+||.+|+.+++.+.+ .++++.+....... .. ..+. ..+.. +.| +.++++....-.. +|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~-~~---~~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSS-SA---GPNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcc-cc---CCCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 589999999999999998875 57888776543210 00 0010 01111 233 3344410000023 78887
Q ss_pred EcCCc-----hhHHHHHHHHHHcCCCeEEeCC--CC--CHHHHHHHHHHhhhc-CCeEE-EcCC
Q 022057 112 DFTDA-----STVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL-IAPT 164 (303)
Q Consensus 112 DfT~p-----~a~~~~~~~al~~g~~vVigTT--G~--~~e~~~~L~~~a~~~-~i~vv-~a~N 164 (303)
..+.+ +.....+..|.++|+.-|+-++ +. .......++++.++. +++.. +-|+
T Consensus 73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 55532 3445677888889975443322 21 111223345555553 66554 3343
No 212
>PRK07574 formate dehydrogenase; Provisional
Probab=95.71 E-value=0.091 Score=51.62 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=45.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
++|+|+|+ |+||+.+++.+. .-++++.+ +|+... + .+.. ...++..+.++++++. .+|+|+-..
T Consensus 193 ktVGIvG~-G~IG~~vA~~l~-~fG~~V~~-~dr~~~--~-~~~~---~~~g~~~~~~l~ell~------~aDvV~l~l 256 (385)
T PRK07574 193 MTVGIVGA-GRIGLAVLRRLK-PFDVKLHY-TDRHRL--P-EEVE---QELGLTYHVSFDSLVS------VCDVVTIHC 256 (385)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCEEEE-ECCCCC--c-hhhH---hhcCceecCCHHHHhh------cCCEEEEcC
Confidence 68999997 999999999877 46888875 665321 1 1111 1345555678999984 799998655
No 213
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.67 E-value=0.13 Score=51.69 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=59.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH---HHhccccCCCccE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV 109 (303)
.-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ...++|+..+.++ ++.. .++|-
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~-----------~g~~VpvlG~~~dL~~~v~~----~~Ide 206 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP-----------GGVSNDWAGNLQQLVEDAKA----GKIHN 206 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc-----------ccCCCCcCCCHHHHHHHHHh----CCCCE
Confidence 357999998 999999999998776 6899999986421 0123445555444 4442 57887
Q ss_pred EEEcC---CchhHHHHHHHHHHcCCCeEEe
Q 022057 110 VIDFT---DASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 110 vIDfT---~p~a~~~~~~~al~~g~~vVig 136 (303)
||-.. .++...+.+..|.+.++++.+-
T Consensus 207 ViIAip~~~~~~l~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 207 VYIAMSMCDGARVKKLVRQLADTTCSVLLI 236 (463)
T ss_pred EEEeCCCcchHHHHHHHHHHHHcCCeEEEe
Confidence 76443 2344567778888999987764
No 214
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=95.67 E-value=0.0046 Score=59.21 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=79.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
+. |+|.|. |-..+..+-.+.+.+ +++-+++.+.+ ..+.+.+ ....++. ++++++.+.. .+.|.+...
T Consensus 3 Pg-v~v~GT-g~~arv~iP~l~e~~-f~v~A~w~Rt~--~ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~ 70 (367)
T KOG2742|consen 3 PG-VGVFGT-GIFARVLIPLLKEEG-FEVKAIWGRTK--TEAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCIS 70 (367)
T ss_pred Cc-eeEecc-ChhHhhhhhhhhhcc-chHhhhhchhh--hHHHHhh---hccchhhccccchhhhcc----CCcceeEec
Confidence 35 999995 999999988777665 99998887632 1112222 2344544 4588888753 567766555
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhc
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~ 155 (303)
-+|..+.+.+..++..|+|||+.++.-+.++.+.+.++++..
T Consensus 71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~ 112 (367)
T KOG2742|consen 71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSP 112 (367)
T ss_pred cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhch
Confidence 678888999999999999999999986667777888877663
No 215
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.60 E-value=0.072 Score=50.81 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=27.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
++||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d 46 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD 46 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence 579999999999999999999864 67887653
No 216
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.58 E-value=0.012 Score=51.44 Aligned_cols=30 Identities=37% Similarity=0.498 Sum_probs=23.5
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
||+|+|+ |.||+.|+..++.. +++++- +|.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~l-~d~ 30 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARA-GYEVTL-YDR 30 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHT-TSEEEE-E-S
T ss_pred CEEEEcC-CHHHHHHHHHHHhC-CCcEEE-EEC
Confidence 7999998 99999999988754 888774 664
No 217
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.58 E-value=0.12 Score=47.99 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=54.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC---CCCC--eeecCCHHHHHhccccCCCcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME---QPLE--IPVMSDLTMVLGSISQSKARA 108 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~---~~~g--v~v~~dl~~~l~~~~~~~~~D 108 (303)
|||+|+|+ |.||..++..+.+ .+.++.. ++++. .....+. |.. .... +...++.+++ .++|
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~d 68 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTL-VARRG--AHLDALNENGLRLEDGEITVPVLAADDPAEL-------GPQD 68 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCh--HHHHHHHHcCCcccCCceeecccCCCChhHc-------CCCC
Confidence 58999998 9999999998875 4677654 34321 1111111 110 0000 1223445443 3789
Q ss_pred EEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057 109 VVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL 142 (303)
Q Consensus 109 VvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~ 142 (303)
++|-++.+..+.+.+..... .+..+|+-..|+..
T Consensus 69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 99988876666665554443 34556665668763
No 218
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.52 E-value=0.028 Score=53.81 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=62.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..+++|+|+ |.||+.+++.+......+-+.++|++. ..+..++.....++ +.+++|.++++ .++||||-
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav------~~aDiVit 198 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAV------EGCDILVT 198 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHh------ccCCEEEE
Confidence 368999998 999999999988877888888998753 22222221101234 55678999998 47999997
Q ss_pred cCCchhHHHHH-HHHHHcCCCeE-EeC
Q 022057 113 FTDASTVYDNV-KQATAFGMRSV-VYV 137 (303)
Q Consensus 113 fT~p~a~~~~~-~~al~~g~~vV-igT 137 (303)
+|+. . .+++ ...++.|.++. ||+
T Consensus 199 aT~s-~-~P~~~~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 199 TTPS-R-KPVVKADWVSEGTHINAIGA 223 (325)
T ss_pred ecCC-C-CcEecHHHcCCCCEEEecCC
Confidence 7732 1 1222 33568888875 553
No 219
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.49 E-value=0.098 Score=50.23 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=56.3
Q ss_pred eecccccccccceEEEee---cCC--CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC
Q 022057 11 RMHHISQNVKAKRFISCS---TNP--PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP 85 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~--~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~ 85 (303)
|++...|.+|.+.+-... ..+ .-.-.++||+|. ||+|+++++.+. -=+|++.. .|+... +... ..
T Consensus 117 ~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~-GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~------~~ 186 (324)
T COG1052 117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL-GRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAE------KE 186 (324)
T ss_pred chHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHH------hh
Confidence 556677788887766553 011 111368999996 999999999877 66888875 554321 1111 12
Q ss_pred CCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 86 LEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 86 ~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+...++ +++++. ++|+++...
T Consensus 187 ~~~~y~~-l~ell~------~sDii~l~~ 208 (324)
T COG1052 187 LGARYVD-LDELLA------ESDIISLHC 208 (324)
T ss_pred cCceecc-HHHHHH------hCCEEEEeC
Confidence 3344444 999995 799988655
No 220
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.45 E-value=0.13 Score=47.25 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
..||.|+|+ |..|..+++.+.. .++.=..++|.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~ 64 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF 64 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 469999998 9999999999874 56655566774
No 221
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.43 E-value=0.059 Score=50.38 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=25.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
-||+|+|+ |.||+.++..+.. .+++++ ++|.+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~-~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFAR-TGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence 47999998 9999999998874 577766 46753
No 222
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.43 E-value=0.095 Score=50.60 Aligned_cols=138 Identities=20% Similarity=0.085 Sum_probs=78.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--c---CCHHHHHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--M---SDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~---~dl~~~l~~~~~~~~~DVv 110 (303)
-+|+|+|+ |.+|...++.+.. -+.+++++-.++. -.+++ .++|... . .+.-+.+. ..+|++
T Consensus 168 ~~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~----K~e~a---~~lGAd~~i~~~~~~~~~~~~-----~~~d~i 233 (339)
T COG1064 168 KWVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEE----KLELA---KKLGADHVINSSDSDALEAVK-----EIADAI 233 (339)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChH----HHHHH---HHhCCcEEEEcCCchhhHHhH-----hhCcEE
Confidence 47999998 9999999987664 4699987543321 11222 1233221 1 12223332 239999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHH-hhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEE
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~-a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIi 189 (303)
||+..+....+.++.....|.-+++|-++..+...-....+ .++ +.+.= .+.-+.+-++++.+.+++..-..+|.
T Consensus 234 i~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~--~~i~G--S~~g~~~d~~e~l~f~~~g~Ikp~i~ 309 (339)
T COG1064 234 IDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKE--ISIVG--SLVGTRADLEEALDFAAEGKIKPEIL 309 (339)
T ss_pred EECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcC--eEEEE--EecCCHHHHHHHHHHHHhCCceeeEE
Confidence 99998666677777777788888888875222110112222 233 44443 33334666777776666544333443
Q ss_pred Ec
Q 022057 190 ES 191 (303)
Q Consensus 190 E~ 191 (303)
|.
T Consensus 310 e~ 311 (339)
T COG1064 310 ET 311 (339)
T ss_pred ee
Confidence 33
No 223
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.41 E-value=0.13 Score=47.68 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=76.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCCC-----------C-CeeecCCH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQP-----------L-EIPVMSDL 94 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~~~-----------~-gv~v~~dl 94 (303)
..||+|.|+ |++|+..++.+. +.+..++++.|+ ++.|-|..++ ...... + +... -+.
T Consensus 38 g~~vaIqGf-GnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~ 114 (254)
T cd05313 38 GKRVAISGS-GNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEG 114 (254)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCC
Confidence 479999998 999999999887 578999999994 2345554433 100000 0 1221 244
Q ss_pred HHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
++++. .++||+|=+...... .+++....+++..+|+|-. + ++++ ..+ .-+++ .+++.|-+..
T Consensus 115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~-a~~---~L~~r--GI~vvPD~la 179 (254)
T cd05313 115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAE-AIE---VFRQA--GVLFAPGKAA 179 (254)
T ss_pred cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHH-HHH---HHHHC--CcEEECchhh
Confidence 56665 589999977654443 6777777778999999976 3 4553 222 22343 4566677654
No 224
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.37 E-value=0.21 Score=49.07 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=24.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|||+|+|. |.||..++..++ . ++++++ +|.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~-G~~Vig-vD~ 30 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-Q-NHEVVA-LDI 30 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-h-CCcEEE-EEC
Confidence 48999997 999999996655 3 788775 664
No 225
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.35 E-value=0.17 Score=48.77 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=27.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVR-AGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 468999999 9999999998874 577556678853
No 226
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.34 E-value=0.11 Score=46.11 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=28.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
..||.|+|+ |.+|..+++.+. ..++.=+-++|.+
T Consensus 21 ~s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 368999998 899999999887 5788777788854
No 227
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=95.32 E-value=0.19 Score=49.28 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=60.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cc----------------hhhhhcCCC--CCCeeecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---ED----------------IGMVCDMEQ--PLEIPVMS 92 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d----------------~~~~~g~~~--~~gv~v~~ 92 (303)
|.||+|.|+||-+|+...+.+.+.|+ +++++........ +. ..++..... ..++.++.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 46899999999999999998887765 9999987532100 00 000000000 00133332
Q ss_pred C---HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 93 D---LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 93 d---l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
. +.++.+ ..++|+|+-...--+...-...|+++|+.+-...
T Consensus 81 G~~~l~~l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN 124 (389)
T TIGR00243 81 GEEGICEMAA----LEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN 124 (389)
T ss_pred CHHHHHHHHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence 2 333332 2467988877776667777778889998876653
No 228
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.21 E-value=0.14 Score=46.81 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
..||.|+|+ |.+|..+++.+.. .++.=.-++|.
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar-~GVg~i~LvD~ 43 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALAR-SGVGKLTLIDF 43 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHH-cCCCEEEEECC
Confidence 468999998 9999999999874 56544445664
No 229
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.21 E-value=0.097 Score=47.87 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=40.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
||.|.|++|.+|+.+++.+.+ .+.+++++. +.. .++.-.++++++++. .++|+||++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~-r~~--------------~d~~~~~~~~~~~~~----~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-EGRVVVALT-SSQ--------------LDLTDPEALERLLRA----IRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeC-Ccc--------------cCCCCHHHHHHHHHh----CCCCEEEECCc
Confidence 689999999999999999885 578877643 321 111112345556642 46799998764
No 230
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.21 E-value=0.092 Score=52.23 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=57.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |.+|+.+++.+.. -+++++ ++|.+.. ...+.. ..|..+ .++++++ ..+|++|++|
T Consensus 212 Gk~VlViG~-G~IG~~vA~~lr~-~Ga~Vi-V~d~dp~--ra~~A~----~~G~~v-~~l~eal------~~aDVVI~aT 275 (425)
T PRK05476 212 GKVVVVAGY-GDVGKGCAQRLRG-LGARVI-VTEVDPI--CALQAA----MDGFRV-MTMEEAA------ELGDIFVTAT 275 (425)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCCch--hhHHHH----hcCCEe-cCHHHHH------hCCCEEEECC
Confidence 468999998 9999999998774 577754 4554321 111111 224443 3577777 4799999998
Q ss_pred CchhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHh
Q 022057 115 DASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152 (303)
Q Consensus 115 ~p~a~-~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a 152 (303)
..... .......++.|.-++...-.-.+-+.+.|.+.+
T Consensus 276 G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 276 GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA 314 (425)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence 54333 323444455554444322211222345555543
No 231
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=95.19 E-value=0.088 Score=50.73 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=85.7
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCC------
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------ 83 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~---------------------~~~eLvg~vd~--~~~g~d~~~~~g~~------ 83 (303)
.+|+||+|+|- |.-.+.+++-+... .|.|+++.+|. ++.|+|+.+..-..
T Consensus 3 ~~~vrv~iiG~-Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 3 TTMVRVAIIGV-GNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred cceEEEEEEec-cchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence 35899999997 99999988876543 26689999884 45677765543110
Q ss_pred -----CCCCeeec---------CCHHHHHhc--------------cccCCCccEEEEcCC---chhHHHHHHHHHHcCCC
Q 022057 84 -----QPLEIPVM---------SDLTMVLGS--------------ISQSKARAVVIDFTD---ASTVYDNVKQATAFGMR 132 (303)
Q Consensus 84 -----~~~gv~v~---------~dl~~~l~~--------------~~~~~~~DVvIDfT~---p~a~~~~~~~al~~g~~ 132 (303)
.+.|+.+. ..+.+.++. .++....|+++.|.+ .++.+-++..+++.|++
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence 11122110 112222220 011233444444443 34567788899999999
Q ss_pred eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHH-HHHHhc
Q 022057 133 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQ-AAISAS 180 (303)
Q Consensus 133 vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~-~a~~~~ 180 (303)
.|-.+|-+...+ ..+.++++++|+|++ .=-. .+|..++.+ +++.++
T Consensus 162 fvN~~P~~iA~d-P~~~~~fee~g~pi~-GDD~ksq~GaTi~h~~La~~f~ 210 (362)
T COG1260 162 FVNAIPVFIASD-PAWVELFEEKGLPIA-GDDIKSQTGATILHRVLAQLFA 210 (362)
T ss_pred eecccCccccCC-HHHHHHHHHcCCcee-ccchhhhcCCceeHHHHHHHHH
Confidence 999998543222 347788899888854 2333 477775533 444444
No 232
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.15 E-value=0.047 Score=52.66 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=64.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
..+|||+|. |.||+.+++.+.. .|+.|.. .|++. -.+.+ .++|..-|+++.++.+ ..+|||+-+|
T Consensus 52 tl~IaIIGf-GnmGqflAetli~-aGh~li~-hsRsd----yssaa---~~yg~~~ft~lhdlce-----rhpDvvLlct 116 (480)
T KOG2380|consen 52 TLVIAIIGF-GNMGQFLAETLID-AGHGLIC-HSRSD----YSSAA---EKYGSAKFTLLHDLCE-----RHPDVVLLCT 116 (480)
T ss_pred ceEEEEEec-CcHHHHHHHHHHh-cCceeEe-cCcch----hHHHH---HHhcccccccHHHHHh-----cCCCEEEEEe
Confidence 489999997 9999999999884 5776654 44432 22222 3677788888988776 5899999888
Q ss_pred CchhHHHHHHHH----HHcCCCeEEeCCCCCHHHHHHHHHH
Q 022057 115 DASTVYDNVKQA----TAFGMRSVVYVPHIQLETVSALSAF 151 (303)
Q Consensus 115 ~p~a~~~~~~~a----l~~g~~vVigTTG~~~e~~~~L~~~ 151 (303)
........+..+ ++.|. +|.|-|-..+-+.+.++++
T Consensus 117 silsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekY 156 (480)
T KOG2380|consen 117 SILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKY 156 (480)
T ss_pred hhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHh
Confidence 766555555432 34443 3334444333333344443
No 233
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.14 E-value=0.03 Score=53.24 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=55.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC--CCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..+|+|+|+ |.||+.+++.+....+.+=+-+++++. ..+..++..... ..+.+..++++++ .++|+||-
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av------~~aDIVi~ 195 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAV------RQADIISC 195 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHH------hcCCEEEE
Confidence 368999997 999999998777644555556777642 222333311011 1366678888887 47999987
Q ss_pred cCCchhHHHHH-HHHHHcCCCeEE
Q 022057 113 FTDASTVYDNV-KQATAFGMRSVV 135 (303)
Q Consensus 113 fT~p~a~~~~~-~~al~~g~~vVi 135 (303)
.|+.. .+.+ ...++.|.++.+
T Consensus 196 aT~s~--~pvl~~~~l~~g~~i~~ 217 (314)
T PRK06141 196 ATLST--EPLVRGEWLKPGTHLDL 217 (314)
T ss_pred eeCCC--CCEecHHHcCCCCEEEe
Confidence 66432 1222 245677875543
No 234
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.10 E-value=0.024 Score=53.78 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=56.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+++|+|+ |.||+.+++++....+.+-+.+++++. ..+..++..-...++.+ .++.++++ .++|+||-+|
T Consensus 126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av------~~aDiVitaT 196 (304)
T PRK07340 126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIP------EAVDLVVTAT 196 (304)
T ss_pred CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHh------hcCCEEEEcc
Confidence 68999997 999999999998666667788888752 22222221101123333 57888888 4799999877
Q ss_pred C-chhHHHHHHHHHHcCCCeE
Q 022057 115 D-ASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 115 ~-p~a~~~~~~~al~~g~~vV 134 (303)
+ ++.+.+ ..++-|.++.
T Consensus 197 ~s~~Pl~~---~~~~~g~hi~ 214 (304)
T PRK07340 197 TSRTPVYP---EAARAGRLVV 214 (304)
T ss_pred CCCCceeC---ccCCCCCEEE
Confidence 4 333332 2357777766
No 235
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.35 Score=47.70 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=74.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeee-cCC-HHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPV-MSD-LTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v-~~d-l~~~l~~~~~~~~~DVvID 112 (303)
.+|.|+|+ |++|..+++.+. ..+.++++ +|.... .+..+.. .+ .+.++.+ +.+ .++.+ ..+|+||-
T Consensus 6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~~-~d~~~~-~~~~~~~~~l-~~~~~~~~~~~~~~~~~------~~~d~vv~ 74 (450)
T PRK14106 6 KKVLVVGA-GVSGLALAKFLK-KLGAKVIL-TDEKEE-DQLKEALEEL-GELGIELVLGEYPEEFL------EGVDLVVV 74 (450)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCch-HHHHHHHHHH-HhcCCEEEeCCcchhHh------hcCCEEEE
Confidence 68999998 899999999887 56888764 565320 1111111 01 1334433 222 23333 47999997
Q ss_pred cCCchhHHHHHHHHHHcCCCe--------------EEeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057 113 FTDASTVYDNVKQATAFGMRS--------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~v--------------VigTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a 176 (303)
.+......+.+..|.+.|+++ |||-||-.-. -.+-|..+-+..+-++.+..| +|+.+.....
T Consensus 75 ~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~~~~~ 152 (450)
T PRK14106 75 SPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLIDAVE 152 (450)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHHHHHh
Confidence 765444455566666666655 4555653211 122344444444445566666 5655432221
Q ss_pred HHhccCCCcEEEEEc
Q 022057 177 ISASFHYKNVEIVES 191 (303)
Q Consensus 177 ~~~~~~~~dieIiE~ 191 (303)
. . ...|+-++|+
T Consensus 153 ~-~--~~~~~~v~E~ 164 (450)
T PRK14106 153 E-Y--GEDDIIVAEV 164 (450)
T ss_pred c-C--CCCCEEEEEc
Confidence 1 1 1245566665
No 236
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.08 E-value=0.098 Score=54.61 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=29.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
++||.|.|++|-+|+.+++.+.++.+++++++.
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 579999999999999999999876679999864
No 237
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=95.07 E-value=0.27 Score=48.70 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=61.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH---HHhccccCCCccE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV 109 (303)
.-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. +.. ...|+|+..+.++ .+.+ .++|.
T Consensus 125 ~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~i~g~pVlg~~~~l~~~i~~----~~id~ 191 (445)
T TIGR03025 125 LRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPS--DRV------EVAGLPVLGKLDDLVELVRA----HRVDE 191 (445)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcc--ccc------ccCCCcccCCHHHHHHHHHh----CCCCE
Confidence 357999997 999999999998765 5899999986421 111 1346777765554 4442 57886
Q ss_pred EEEcCC---chhHHHHHHHHHHcCCCeEEe
Q 022057 110 VIDFTD---ASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 110 vIDfT~---p~a~~~~~~~al~~g~~vVig 136 (303)
|+-..+ ++...+.+..|.++|+++.+-
T Consensus 192 ViIa~p~~~~~~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 192 VIIALPLSEEARILELLLQLRDLGVDVRLV 221 (445)
T ss_pred EEEecCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 664432 233456788899999987754
No 238
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.07 E-value=0.32 Score=45.78 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=60.9
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCeee--cCCH-HHHHhccccCCCccE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV 109 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV 109 (303)
++++|+|+|. |.||+.+++.+.+ .+..+ +-..|... .. .+.+ ...|+.- ..+. .+.+ ..+|+
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~-~g~~v~i~g~d~~~--~~-~~~a---~~lgv~d~~~~~~~~~~~------~~aD~ 67 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKE-AGLVVRIIGRDRSA--AT-LKAA---LELGVIDELTVAGLAEAA------AEADL 67 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHH-cCCeEEEEeecCcH--HH-HHHH---hhcCcccccccchhhhhc------ccCCE
Confidence 4689999997 9999999998874 55544 33333321 00 0000 1223321 1222 2222 46899
Q ss_pred EEEcCCchhHHHHHHHHHH-cCCC-eEEeCCCCCHHHHHHHHHHh
Q 022057 110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC 152 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~-~g~~-vVigTTG~~~e~~~~L~~~a 152 (303)
||-+++..++.+.++.... .... +|+.+|.....-.+.++++.
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9988888888888887763 4443 45555555444455555554
No 239
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.04 E-value=0.13 Score=48.07 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=50.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||.|.|++|-+|+.+++.+.+. + ++++ +|+... .+ ..++.-...++++++. .++|+||.+..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DY-----CGDFSNPEGVAETVRK----IRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----cc-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence 48999999999999999988754 4 5554 443210 00 0111112234455542 36999998742
Q ss_pred ----------ch--------hHHHHHHHHHHcCCCeEEeCC
Q 022057 116 ----------AS--------TVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 116 ----------p~--------a~~~~~~~al~~g~~vVigTT 138 (303)
|+ .....++.|.++|+++|.-+|
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 11 123455667777877775444
No 240
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=94.99 E-value=0.31 Score=48.36 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=62.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH---HHhccccCCCccE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV 109 (303)
.-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ..+ ...++|+..+.++ .+++ .++|.
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~~~gvpVlg~~~dl~~~i~~----~~vd~ 194 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ART------GVRGVPVLGKLDDLEELIRE----GEVDE 194 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--ccc------ccCCCCccCCHHHHHHHHHh----cCCCE
Confidence 357999997 999999999998755 5899999985421 111 1246777665444 4443 67887
Q ss_pred EEEcCC---chhHHHHHHHHHHcCCCeEEe
Q 022057 110 VIDFTD---ASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 110 vIDfT~---p~a~~~~~~~al~~g~~vVig 136 (303)
||...+ ++...+.+..|.+.|+++.+-
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 775543 344567788899999988764
No 241
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.95 E-value=0.056 Score=49.82 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=75.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-------------eeecCCHHHH
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-------------IPVMSDLTMV 97 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-------------v~v~~dl~~~ 97 (303)
.+|+|-|+ |++|+..++.+.+ .+..++++.|.. ..|-|..++.......+ ...+++-+++
T Consensus 33 ~~v~IqGf-G~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 33 KRVAIQGF-GNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp CEEEEEES-SHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHG
T ss_pred CEEEEECC-CHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccc
Confidence 78999997 9999999998885 599999997742 23555544442111111 1222221266
Q ss_pred HhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 98 l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
+. .++||+|=+..+... .+++...++.|..+|+|-. .++++..+ . -+++ .+++.|.|..
T Consensus 111 l~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~---~-L~~r--GI~viPD~~a 172 (244)
T PF00208_consen 111 LS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE---I-LRER--GILVIPDFLA 172 (244)
T ss_dssp GT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH---H-HHHT--T-EEE-HHHH
T ss_pred cc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH---H-HHHC--CCEEEcchhh
Confidence 65 589999988866655 6677767899999999976 35665432 2 3443 4567777653
No 242
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.94 E-value=0.12 Score=49.68 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=44.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |+||+.+++.+. .-++++. ++|+.. ..... ...++. +.++++++. .+|+|+-..
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~-~~G~~V~-~~d~~~--~~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~l 212 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAK-GFGMRIL-YYSRTR--KPEAE-----KELGAE-YRPLEELLR------ESDFVSLHV 212 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHH-HCCCEEE-EECCCC--ChhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeC
Confidence 368999998 999999999887 4588876 467642 11110 123333 458999984 789998665
Q ss_pred C
Q 022057 115 D 115 (303)
Q Consensus 115 ~ 115 (303)
+
T Consensus 213 P 213 (333)
T PRK13243 213 P 213 (333)
T ss_pred C
Confidence 3
No 243
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.92 E-value=0.13 Score=49.45 Aligned_cols=149 Identities=12% Similarity=0.127 Sum_probs=85.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.+|+|+|+ |.||+.+++.+. .-++++++..++. .... .+ ...|+.+ .+++++++ .+|+|+-..+
T Consensus 17 KtVGIIG~-GsIG~amA~nL~-d~G~~ViV~~r~~---~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llLP 80 (335)
T PRK13403 17 KTVAVIGY-GSQGHAQAQNLR-DSGVEVVVGVRPG---KSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLLP 80 (335)
T ss_pred CEEEEEeE-cHHHHHHHHHHH-HCcCEEEEEECcc---hhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeCC
Confidence 57999998 999999999887 5789998755432 1111 11 1234444 37899884 7999886554
Q ss_pred chhHHHHHH-HHHHc-CC-CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEcc
Q 022057 116 ASTVYDNVK-QATAF-GM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR 192 (303)
Q Consensus 116 p~a~~~~~~-~al~~-g~-~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~H 192 (303)
-+...+.+. ..+.+ .. .+++=..||+- .+..| ---.++-++..+-=+.|..+=..+.+-.. .+. .+=.|
T Consensus 81 d~~t~~V~~~eil~~MK~GaiL~f~hgfni-~~~~i---~pp~~vdv~mvaPKgpG~~vR~~y~~G~G--vp~--l~av~ 152 (335)
T PRK13403 81 DEQQAHVYKAEVEENLREGQMLLFSHGFNI-HFGQI---NPPSYVDVAMVAPKSPGHLVRRVFQEGNG--VPA--LVAVH 152 (335)
T ss_pred ChHHHHHHHHHHHhcCCCCCEEEECCCcce-ecCce---eCCCCCeEEEECCCCCChHHHHHHHcCCC--cee--EEEEE
Confidence 333333332 12222 12 23444458764 22222 12234666666666777755444442211 122 22223
Q ss_pred CCCCCCCcHHHHHHHHHHHh
Q 022057 193 PNARDFPSPDATQIANNLSN 212 (303)
Q Consensus 193 h~K~DaPSGTA~~l~~~i~~ 212 (303)
+ | +||.|..+|-+.+.
T Consensus 153 q---d-~sg~a~~~ala~a~ 168 (335)
T PRK13403 153 Q---D-ATGTALHVALAYAK 168 (335)
T ss_pred E---C-CCCcHHHHHHHHHH
Confidence 2 5 89999999888876
No 244
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.19 Score=48.17 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=26.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
-||+|+|+ |-||+.++..+. ..+++++ ++|..
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a-~aG~~V~-l~D~~ 39 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARAL-AHGLDVV-AWDPA 39 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 57999998 999999999877 5688887 47753
No 245
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.89 E-value=0.14 Score=47.62 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.4
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
|.|.|++|-+|+.+++.+.+ .+.+++.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence 78999999999999999886 477888888764
No 246
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.89 E-value=0.15 Score=42.54 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.7
Q ss_pred EEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEec
Q 022057 38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS 69 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~ 69 (303)
|.|.|+||-+|+...+.+.+.| .+++++....
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 6899999999999999999888 5999998764
No 247
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.86 E-value=0.19 Score=48.10 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC------CcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~------~~eLvg~vd~ 69 (303)
++||+|+|++|.+|+.++..+...+ +.+|+. +|.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~ 41 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDI 41 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEc
Confidence 5899999999999999999887643 236765 564
No 248
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.84 E-value=0.062 Score=45.16 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=65.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
|||+|+|++|.+|+.++-.+...+-..=+..+|.+. .| .|+...... ....+.+..+..+.+ .++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~~~~~------~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP-LPSPVRITSGDYEAL------KDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG-STEEEEEEESSGGGG------TTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh-ccccccccccccccc------ccccEE
Confidence 699999999999999999888765433244677641 11 122222110 112233333333444 479998
Q ss_pred EEcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccC
Q 022057 111 IDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 182 (303)
Q Consensus 111 IDfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~ 182 (303)
|-.. .|..--+.-...++.+.+++ .+-.+.|.+.+.+ .-+++.+|= +++|-++++..+++
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtNP---vd~~t~~~~~~s~~ 134 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTNP---VDVMTYVAQKYSGF 134 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SSS---HHHHHHHHHHHHTS
T ss_pred EEeccccccccccHHHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCCc---HHHHHHHHHHhhCc
Confidence 8543 11100000011112222222 2344556666633 456666664 67777777666643
No 249
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.13 Score=52.16 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
-||+|+|+ |.||+.|+..+. ..+++++ ++|.+
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la-~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAA-QAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 47999998 999999999877 4588887 46753
No 250
>PLN02427 UDP-apiose/xylose synthase
Probab=94.82 E-value=0.19 Score=48.50 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=28.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
+|||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 579999999999999999999876568887753
No 251
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.81 E-value=0.28 Score=46.32 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=71.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
..||.|+|+ |.+|.++++.+. ..++.=+.++|.+... .|+.. +... +..|-+-.....+-+.+ .+++|-|
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~-~dIGk~Kaea~~~~L~e----LNp~V~V 91 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLRE-EDIGKNRAEASQARLAE----LNPYVPV 91 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCCh-HHhCHHHHHHHHHHHHH----HCCCCEE
Confidence 368999998 999999999987 5788777788854210 11110 0000 00010001111122222 4678777
Q ss_pred EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ 170 (303)
+..+.....+.+ .+..+|+-|+. +.+....|.++|+++++|++.+.-..+...
T Consensus 92 ~~~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 92 TVSTGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred EEEeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence 654332222332 24557777654 666777899999999999998776555443
No 252
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.79 E-value=0.2 Score=44.63 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
..||+|+|+ |.||..++..+.. .++.=+-++|.+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 468999999 9999999998874 577444467753
No 253
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=94.78 E-value=0.31 Score=41.98 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcCC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD 115 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT~ 115 (303)
++.|+|+ |..|+.+++.+. +.+++++|.+|.+.. ..+. .-.|+|++.+.+++.... .+.+ +++....
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~--~~~~-----~i~g~pvlg~~~~l~~~~---~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPA--LQGT-----SVDGLPVLGGDEDLLRYP---PDEVDLVVAIGD 68 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCcc--ccCc-----ccCCccEECCHHHHhhhc---ccccEEEEEcCC
Confidence 4789998 999999999886 468999999986421 0111 124677776665543210 1233 4444445
Q ss_pred chhHHHHHHHHHHcCCCe
Q 022057 116 ASTVYDNVKQATAFGMRS 133 (303)
Q Consensus 116 p~a~~~~~~~al~~g~~v 133 (303)
+....+.+..+.+.+.++
T Consensus 69 ~~~~~~i~~~l~~~g~~~ 86 (201)
T TIGR03570 69 NKLRRRLFEKLKAKGYRF 86 (201)
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 555566666666666544
No 254
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.76 E-value=0.18 Score=45.61 Aligned_cols=97 Identities=25% Similarity=0.304 Sum_probs=63.1
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEE--EEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAG--AIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAV 109 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg--~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DV 109 (303)
++.||+|+|. |++|.-+.-.+..+ ..+|.-+ .+|+..-|.. . + .++|++.+. -++-+|.. -...+.|.
T Consensus 3 sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdgla--r-a---arlgv~tt~egv~~ll~~-p~~~di~l 74 (310)
T COG4569 3 SKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLA--R-A---ARLGVATTHEGVIGLLNM-PEFADIDL 74 (310)
T ss_pred CcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHH--H-H---HhcCCcchhhHHHHHHhC-CCCCCcce
Confidence 4689999995 99999865555544 4455443 3455322211 1 1 245665543 34445531 01123458
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
|.|.|+.-++.++...+.+.|++++-=|+
T Consensus 75 vfdatsa~~h~~~a~~~ae~gi~~idltp 103 (310)
T COG4569 75 VFDATSAGAHVKNAAALAEAGIRLIDLTP 103 (310)
T ss_pred EEeccccchhhcchHhHHhcCCceeecch
Confidence 99999999999999999999999997776
No 255
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.75 E-value=0.28 Score=48.31 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=68.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvI 111 (303)
|||.|+|+ |++|+.+++.+.+ .+.+++ ++|++. .....+. ...++++. .+.+.+.+. ...++|.+|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~---~~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQ---DRLDVRTVVGNGSSPDVLREA--GAEDADLLI 70 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHH---hhcCEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence 58999998 9999999998874 578887 566532 1122221 11233321 122222110 014789888
Q ss_pred EcCCchhHHH-HHHHHHHc-CCCeEEeCCCCCHHHHHHHHHHh--hhcCCeEEEcCCCcHHHHHHHHH
Q 022057 112 DFTDASTVYD-NVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 112 DfT~p~a~~~-~~~~al~~-g~~vVigTTG~~~e~~~~L~~~a--~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
-++..+.... ....+.+. +.+-++..+--.+ . .+..++. ++.|+..+++|..-.+-.+...+
T Consensus 71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~-~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l 136 (453)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGAPTTIARVRNPE-Y-AEYDKLFSKEALGIDLLISPELLVAREIARLI 136 (453)
T ss_pred EecCChHHHHHHHHHHHHhcCCCeEEEEECCcc-c-cchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence 6665444433 33444443 5544444332221 1 1223333 55678888988877776655544
No 256
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.69 E-value=0.094 Score=51.93 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=59.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..||.|+|+ |.||+.+++.+.+ .++.-+-+++++. ..+.+++. +++. ..++++.+.+ .++||||-
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~-~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l------~~~DvVis 244 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAE-KGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEAL------AEADVVIS 244 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHh-CCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhh------hhCCEEEE
Confidence 457999998 9999999999885 5666666777653 34445552 4442 3356666676 47999998
Q ss_pred cC-Cc--hhHHHHHHHHHHcCCC
Q 022057 113 FT-DA--STVYDNVKQATAFGMR 132 (303)
Q Consensus 113 fT-~p--~a~~~~~~~al~~g~~ 132 (303)
.| .| -...+.+..+++..+.
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC
Confidence 76 33 3447788888887777
No 257
>PRK07877 hypothetical protein; Provisional
Probab=94.64 E-value=0.14 Score=54.12 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=57.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC-----C----------CCcchh-----hhhcCCCCCCeeec--
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH-----S----------VGEDIG-----MVCDMEQPLEIPVM-- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~-----~----------~g~d~~-----~~~g~~~~~gv~v~-- 91 (303)
..||+|+|+ | +|..++..+.. .++ -=.-++|.+ + .|+.-. .+..+.....|..+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~Lar-aGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAA-EGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHH-ccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 468999999 8 99999998874 453 222345521 1 111110 01111122333332
Q ss_pred ----CCHHHHHhccccCCCccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTT 138 (303)
+++++++ .++|+|||++.. +.=.-.-..|.++|+|+|.|+.
T Consensus 184 ~i~~~n~~~~l------~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 184 GLTEDNVDAFL------DGLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred cCCHHHHHHHh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2566666 479999999954 4445555789999999999884
No 258
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.64 E-value=0.18 Score=51.61 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=63.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCH--HHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVvID 112 (303)
..|+.|+|+ |.-|..+++.+...+.+..||.+|.+. ...|. .-.|+||+... .++++ +...|-++-
T Consensus 116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~-~i~Gv~V~g~~~i~~~v~----~~~~~~iii 183 (588)
T COG1086 116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGM-KIRGVPVLGRIEIERVVE----ELGIQLILI 183 (588)
T ss_pred CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCC-EEeceeeechhHHHHHHH----HcCCceEEE
Confidence 579999998 999999999999999999999999652 22232 23578887644 44444 356664433
Q ss_pred c---CCchhHHHHHHHHHHcCCCeEE
Q 022057 113 F---TDASTVYDNVKQATAFGMRSVV 135 (303)
Q Consensus 113 f---T~p~a~~~~~~~al~~g~~vVi 135 (303)
+ -.++...+.++.+.+.|+.+=+
T Consensus 184 Aips~~~~~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 184 AIPSASQEERRRILLRLARTGIAVRI 209 (588)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 3 2566777888888899866543
No 259
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.62 E-value=0.87 Score=45.08 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=74.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeec-CC-HHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~d-l~~~l~~~~~~~~~DVvI 111 (303)
+.||.|+|. |+.|...++.+....+ .++.+ .|....-.....+ +. |+.++ .. -.+.+ .++|+||
T Consensus 7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~~-~D~~~~~~~~~~l----~~-g~~~~~g~~~~~~~------~~~d~vV 73 (438)
T PRK04663 7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVKV-IDTRETPPGQEQL----PE-DVELHSGGWNLEWL------LEADLVV 73 (438)
T ss_pred CceEEEEec-cHHHHHHHHHHHhcCCCCeEEE-EeCCCCchhHHHh----hc-CCEEEeCCCChHHh------ccCCEEE
Confidence 368999998 9999999999887765 77764 7753211111112 12 66553 21 22334 3689877
Q ss_pred EcCCchhHHHHHHHHHHcCCCeE--------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057 112 DFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
-.+.-....+.+..|.++|+|++ ||-||-+-. -..-|..+-++.+....+..|+ |+.++..
T Consensus 74 ~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~~~- 150 (438)
T PRK04663 74 TNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALDL- 150 (438)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHHhh-
Confidence 54421222344555666666655 454553211 1223444455566666777884 5554321
Q ss_pred HHHhccCCCcEEEEEc
Q 022057 176 AISASFHYKNVEIVES 191 (303)
Q Consensus 176 a~~~~~~~~dieIiE~ 191 (303)
+.. ..|+-|+|.
T Consensus 151 ---~~~-~~~~~V~E~ 162 (438)
T PRK04663 151 ---LEQ-DAELYVLEL 162 (438)
T ss_pred ---hcC-CCCEEEEEc
Confidence 111 236667775
No 260
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=94.60 E-value=0.46 Score=47.27 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=58.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCC--HHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVv 110 (303)
+-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ..+. .-.++|+..+ +.+.+.+ .++|.|
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~~----~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYAR----TRYAYV 192 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHHh----CCCCEE
Confidence 457999998 999999999987655 6899999986421 1111 1235666544 3344432 567855
Q ss_pred EEcC---CchhHHHHHHHHHHcCC-CeEEeCCCC
Q 022057 111 IDFT---DASTVYDNVKQATAFGM-RSVVYVPHI 140 (303)
Q Consensus 111 IDfT---~p~a~~~~~~~al~~g~-~vVigTTG~ 140 (303)
+-.. .++...+.+..|.+.++ ++.+ -|.+
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v~~V~~-vP~~ 225 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHFRNVLI-VPSL 225 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCCeEEEE-eCcc
Confidence 5333 23455677778888888 5444 3443
No 261
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.54 E-value=0.27 Score=45.77 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=54.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-------CCCCeeecCCHHHHHhccccCCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSKA 106 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~~ 106 (303)
|||+|+|+ |.||..++..+.+. +.++..+ ++.. ....+. |+. ........++.++.. .+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~-~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFL-VRPK---RAKALRERGLVIRSDHGDAVVPGPVITDPEELT------GP 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHC-CCceEEE-ecHH---HHHHHHhCCeEEEeCCCeEEecceeecCHHHcc------CC
Confidence 58999998 99999999988754 6665543 3311 111111 000 001112345555554 47
Q ss_pred ccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057 107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL 142 (303)
Q Consensus 107 ~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~ 142 (303)
+|++|-++.+..+.+.+..... .+..+|+-..|+..
T Consensus 69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 8999988876666665554433 34445544458753
No 262
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.53 E-value=1.7 Score=41.55 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=42.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC---Cc--chhhhhcC-CCCCCeeecCCHHHHHhccccCCCc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GE--DIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKAR 107 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~--d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (303)
+.||+|+|+ |.||..++..+.. ++ .+ +..+|.+.. |+ |....... .....+..++|++++ .++
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~-~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-------~~a 75 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVL-KNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-------AGS 75 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-------CCC
Confidence 368999998 9999999987764 45 47 667886421 11 11111100 011234445788654 489
Q ss_pred cEEEEcC
Q 022057 108 AVVIDFT 114 (303)
Q Consensus 108 DVvIDfT 114 (303)
|+||...
T Consensus 76 DiVI~ta 82 (321)
T PTZ00082 76 DVVIVTA 82 (321)
T ss_pred CEEEECC
Confidence 9998743
No 263
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.19 Score=45.55 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=71.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvI 111 (303)
|+++|+|+ |++|+.+++.+.+ .+.+++.+-+.+ ....+... ...++.+. ++.+.+.+. --.++|++|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~-~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSE-EGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDEDVLEEA--GIDDADAVV 71 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHh-CCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence 68999999 9999999999884 577777654422 11122111 12333221 233333221 124689998
Q ss_pred EcCCchhHHHHH-HHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057 112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 112 DfT~p~a~~~~~-~~al~-~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
-.|..+.....+ ..+++ .|+|-|+-+.-- ++..+.+ ++-|+-.+++|=...|-.+...+
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~-~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~i 132 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARN-PEHEKVL----EKLGADVIISPEKLAAKRLARLI 132 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecC-HHHHHHH----HHcCCcEEECHHHHHHHHHHHHh
Confidence 777665543333 33434 799999876533 2222222 33346678877777776555444
No 264
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.50 E-value=1 Score=45.26 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=72.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC--CHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVvID 112 (303)
+.||.|+|+ |+.|+.+++.+. ..+.++. +.|.+.. ...++. .+.|++++. +..+.+ .++|+||-
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~------~~~d~vV~ 80 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLS-ELGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQL------DSFSLVVT 80 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHh------cCCCEEEe
Confidence 468999998 999999999877 5667654 4775321 112221 245776642 223334 36898874
Q ss_pred cC-CchhHHHHHHHHHHcCCCe---------------------EEeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057 113 FT-DASTVYDNVKQATAFGMRS---------------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIG 168 (303)
Q Consensus 113 fT-~p~a~~~~~~~al~~g~~v---------------------VigTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiG 168 (303)
.+ -|.. .+.+..|.++|+++ +||-||-+-. -..-|..+-++.+.......|+...
T Consensus 81 Spgi~~~-~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~p 159 (473)
T PRK00141 81 SPGWRPD-SPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVP 159 (473)
T ss_pred CCCCCCC-CHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccCChh
Confidence 33 1222 23344555555533 4455654311 1223444445555566677785444
Q ss_pred HHHHHHHHHHhccCCCcEEEEEc
Q 022057 169 SILLQQAAISASFHYKNVEIVES 191 (303)
Q Consensus 169 v~ll~~~a~~~~~~~~dieIiE~ 191 (303)
... .+. .....|+-++|.
T Consensus 160 ~~~--~l~---~~~~~~~~V~E~ 177 (473)
T PRK00141 160 VSA--ALV---AQPRIDVLVAEL 177 (473)
T ss_pred HHH--HHh---cCCCCCEEEEec
Confidence 331 111 112345667776
No 265
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.50 E-value=0.36 Score=46.40 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=64.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCCC-----CCeeecCCHHHHHhccccCC
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK 105 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~~~~~g~~~~-----~gv~v~~dl~~~l~~~~~~~ 105 (303)
++++|.|.|++|-+|+.+++.++ ..|.++.|.+..+..-+. +.++-+.++. -++.-++++++++ .
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai------~ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI------D 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH------h
Confidence 46899999999999999999988 579999998875421011 1122121111 1223356788888 4
Q ss_pred CccEEEEcCCc-----------------hhHHHHHHHHHHcC--CCeEEe
Q 022057 106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVVY 136 (303)
Q Consensus 106 ~~DVvIDfT~p-----------------~a~~~~~~~al~~g--~~vVig 136 (303)
++|.|+-..+| ..+...++.|.+.. +++|.-
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 79999875543 13355778888888 777754
No 266
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.49 E-value=0.28 Score=44.90 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=25.3
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
||.|+|+ |.+|..+++.+.. .++.=.-++|.
T Consensus 1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVIDM 31 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 6899998 9999999999874 56666667774
No 267
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.46 E-value=0.38 Score=47.64 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=50.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.-+|+|+|+ |.+|+.+++.+. .-+++++. +|.+.. + ..+.. ..|..+ .++++++ ..+|++|++|
T Consensus 195 Gk~VvViG~-G~IG~~vA~~ak-~~Ga~ViV-~d~dp~-r-~~~A~----~~G~~v-~~leeal------~~aDVVItaT 258 (406)
T TIGR00936 195 GKTVVVAGY-GWCGKGIAMRAR-GMGARVIV-TEVDPI-R-ALEAA----MDGFRV-MTMEEAA------KIGDIFITAT 258 (406)
T ss_pred cCEEEEECC-CHHHHHHHHHHh-hCcCEEEE-EeCChh-h-HHHHH----hcCCEe-CCHHHHH------hcCCEEEECC
Confidence 468999998 999999999777 45888654 654321 1 11111 223333 2456776 3689999988
Q ss_pred CchhHHH-HHHHHHHcCCCeE
Q 022057 115 DASTVYD-NVKQATAFGMRSV 134 (303)
Q Consensus 115 ~p~a~~~-~~~~al~~g~~vV 134 (303)
......+ .....++.|.-++
T Consensus 259 G~~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 259 GNKDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred CCHHHHHHHHHhcCCCCcEEE
Confidence 5444333 2444455554443
No 268
>PRK05865 hypothetical protein; Provisional
Probab=94.46 E-value=0.3 Score=52.73 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=60.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
|||.|.|++|.+|+.+++.+.+ .+.++++...... .....-... -..++.-.+++++++ .++|+||.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R~~~--~~~~~~v~~-v~gDL~D~~~l~~al------~~vD~VVHlAa 70 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIARHRP--DSWPSSADF-IAADIRDATAVESAM------TGADVVAHCAW 70 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCch--hhcccCceE-EEeeCCCHHHHHHHH------hCCCEEEECCC
Confidence 4899999999999999998875 5788877543211 000000000 000111112344455 36999999863
Q ss_pred c---------hhHHHHHHHHHHcCC-CeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 116 A---------STVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 116 p---------~a~~~~~~~al~~g~-~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
. ......++.+.++|+ .+|.-.|.. . ...++++++.+++++
T Consensus 71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-K---~aaE~ll~~~gl~~v 121 (854)
T PRK05865 71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH-Q---PRVEQMLADCGLEWV 121 (854)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-H---HHHHHHHHHcCCCEE
Confidence 2 223455667777776 444333332 2 234445555666554
No 269
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.39 E-value=0.3 Score=45.71 Aligned_cols=121 Identities=15% Similarity=0.214 Sum_probs=63.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-hhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..+|.|+|+ |.+|..+++.+.. .++.=+-++|.+.. ..++.. +....+..|-+-..-+.+-+.+ -+|++-|.
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar-~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~----INP~~~V~ 103 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALAR-TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQ----INPECRVT 103 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHh----HCCCcEEE
Confidence 468999998 9999999999884 45444456664311 001110 0000001111111112222222 35555443
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEc
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a 162 (303)
.-......++....+..+.++|+-+.+-- .....|.++|+++++|++.+
T Consensus 104 ~i~~~i~~e~~~~ll~~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 104 VVDDFITPDNVAEYMSAGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred EEecccChhhHHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 21111113344444455788888877642 33456888899999998754
No 270
>PRK05086 malate dehydrogenase; Provisional
Probab=94.39 E-value=0.44 Score=45.37 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=53.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCc-chhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~-d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI 111 (303)
|||+|+|++|++|+.++..+.. .+....+..+|.+.... .+-++........+.. .+++.+.+ .++|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l------~~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPAL------EGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHc------CCCCEEE
Confidence 6999999999999999988754 33434445566532110 0001111000112221 34655555 4799999
Q ss_pred EcCC----ch------------hHHHHHHHHHHcCCC-eEEeCCCC
Q 022057 112 DFTD----AS------------TVYDNVKQATAFGMR-SVVYVPHI 140 (303)
Q Consensus 112 DfT~----p~------------a~~~~~~~al~~g~~-vVigTTG~ 140 (303)
.+.- |. ...+.++...+++.+ +|+=.|..
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 7642 21 344556666667644 44434433
No 271
>PLN02477 glutamate dehydrogenase
Probab=94.37 E-value=0.3 Score=48.40 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=72.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------CC-CeeecCCHHHHHhccc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS 102 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------~~-gv~v~~dl~~~l~~~~ 102 (303)
-.||+|.|+ |++|+..++.+. +.+..|+++.|.+ ..|-|..++..... .+ +... -+.++++.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~--- 279 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV--- 279 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence 378999997 999999999876 5789999999853 34666655431100 11 1111 13355654
Q ss_pred cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
.++||+|=+...... .+++. +-+..+|+|-. + ++++..+.| +++ .+++.|-+..
T Consensus 280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~a 336 (410)
T PLN02477 280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIYA 336 (410)
T ss_pred --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence 589999976644433 44554 46899999876 3 555432222 343 4566676654
No 272
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.36 E-value=0.089 Score=50.32 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=58.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCe--eecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
..+++|+|+ |.+|+.+++.+....+++-+.+++++. ..+..++.. ...+++ ..++++++++ .++|+||
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av------~~aDiVv 199 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAM------SGADIIV 199 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------ccCCEEE
Confidence 358999998 999999999998667788888888753 222222210 012233 4478899888 4799999
Q ss_pred EcCCchhHHHHH-HHHHHcCCCeE
Q 022057 112 DFTDASTVYDNV-KQATAFGMRSV 134 (303)
Q Consensus 112 DfT~p~a~~~~~-~~al~~g~~vV 134 (303)
-+|+... +.+ ...++.|.++.
T Consensus 200 taT~s~~--p~i~~~~l~~g~~i~ 221 (326)
T TIGR02992 200 TTTPSET--PILHAEWLEPGQHVT 221 (326)
T ss_pred EecCCCC--cEecHHHcCCCcEEE
Confidence 7774321 222 24467777665
No 273
>PLN00106 malate dehydrogenase
Probab=94.35 E-value=0.24 Score=47.57 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=30.6
Q ss_pred eecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 27 ~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
|-..-.-.+.||+|+|++|++|..++-.+...+-..=...+|.+
T Consensus 10 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~ 53 (323)
T PLN00106 10 CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIA 53 (323)
T ss_pred cccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 33333344579999998899999999988865544333457753
No 274
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.33 E-value=0.97 Score=44.56 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=74.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI 111 (303)
.+|.|+|+ |++|+..++.+. ..+.++++ .|..... ....++ .+.|+.++ .+..+++. ..+|+||
T Consensus 6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~-----~~~d~vV 73 (447)
T PRK02472 6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQEL----LEEGIKVICGSHPLELLD-----EDFDLMV 73 (447)
T ss_pred CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHH----HhcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence 47999998 889999988776 57888776 4643210 111222 13455543 23344442 2489887
Q ss_pred EcCCchhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057 112 DFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~g~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
-...-....+.+..|.+.|+|++ |+-||-.- --...|..+-+..+.......| +|..+.. +
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~-~ 150 (447)
T PRK02472 74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE-V 150 (447)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-H
Confidence 54421222355666777777765 44455321 1122344445555555567777 4444322 1
Q ss_pred HHHhccCCCcEEEEEc
Q 022057 176 AISASFHYKNVEIVES 191 (303)
Q Consensus 176 a~~~~~~~~dieIiE~ 191 (303)
..... ..|+-|+|.
T Consensus 151 ~~~~~--~~~~~V~E~ 164 (447)
T PRK02472 151 AQKAT--ADDTLVMEL 164 (447)
T ss_pred HhcCC--CCCEEEEEc
Confidence 11111 246667776
No 275
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.32 E-value=0.8 Score=45.66 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=73.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCCCCCCeeec--CCHHHHHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv 110 (303)
.||+|+|. |+.|+.+++.+. ..+.++.+ .|...... +. ..+ .+.|+.++ .+..+.+ .++|+|
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~-~~G~~V~~-~D~~~~~~~~~~~~~l----~~~gi~~~~~~~~~~~~------~~~dlV 81 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLV-KLGAKVTA-FDKKSEEELGEVSNEL----KELGVKLVLGENYLDKL------DGFDVI 81 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHH-HCCCEEEE-ECCCCCccchHHHHHH----HhCCCEEEeCCCChHHh------ccCCEE
Confidence 58999997 999999998776 56777654 77432111 10 112 23455553 2223444 368988
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeE--------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~ 174 (303)
|-...-....+.+..|.+.|+|++ ||-||-.-. -...|..+-+..+.......| +|+.++..
T Consensus 82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~ 159 (458)
T PRK01710 82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN 159 (458)
T ss_pred EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHH
Confidence 754322223455666666666655 333443210 112233344445555556677 56655433
Q ss_pred HHHHhccCCCcEEEEEc
Q 022057 175 AAISASFHYKNVEIVES 191 (303)
Q Consensus 175 ~a~~~~~~~~dieIiE~ 191 (303)
+. ... ..|+-|+|+
T Consensus 160 ~~-~~~--~~~~~VlE~ 173 (458)
T PRK01710 160 IE-EIK--EEDKVVLEL 173 (458)
T ss_pred Hh-hCC--CCCEEEEEc
Confidence 22 121 246667775
No 276
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.29 E-value=0.18 Score=48.09 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=43.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (303)
.+||+|+|+ |++|..++-.+...+-..=+..+|.+. .|. |+...........+..+.|++++ .++|+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-------~~adi 74 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-------ANSKV 74 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-------CCCCE
Confidence 369999998 999999999887655443344678532 111 22211111011234445788874 58999
Q ss_pred EEEcC
Q 022057 110 VIDFT 114 (303)
Q Consensus 110 vIDfT 114 (303)
||-+.
T Consensus 75 vvita 79 (312)
T cd05293 75 VIVTA 79 (312)
T ss_pred EEECC
Confidence 98743
No 277
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.22 E-value=0.42 Score=44.71 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EE
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VI 111 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vI 111 (303)
.++.++.|.|||+++|+++++.++ ..++.|+-+..+. ..+.+++ .++++... ..+++ .+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIPA 63 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEEC
Confidence 345689999999999999999888 4677777654332 1112221 11121110 13443 56
Q ss_pred EcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057 112 DFTDASTVYDNVKQATAF--GMRSVVYVPH 139 (303)
Q Consensus 112 DfT~p~a~~~~~~~al~~--g~~vVigTTG 139 (303)
|.|.|+............ .+.++|=.-|
T Consensus 64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 64 DLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred cCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 899999888887777776 6888876554
No 278
>PRK14851 hypothetical protein; Provisional
Probab=94.21 E-value=0.16 Score=53.40 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
..||+|+|+ |.+|..+++.+.. .|+.=.-++|
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar-~GVG~l~LvD 74 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVR-TGIGRFHIAD 74 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHH-hCCCeEEEEc
Confidence 468999998 9999999998874 4554444555
No 279
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.17 E-value=0.44 Score=45.03 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=51.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-----CCC---CeeecCCHHHHHhccccCCC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSKA 106 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~~ 106 (303)
+|||+|+|+ |.||..++..+.+ .+.++.-+.... .+.-...|+. ... .++++++.++ . ..
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~ 72 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PP 72 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CC
Confidence 479999998 9999999998875 466666443321 1110000100 000 1223344432 2 46
Q ss_pred ccEEEEcCCchhHHHHH---HHHHHcCCCeEEeCCCCCH
Q 022057 107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQL 142 (303)
Q Consensus 107 ~DVvIDfT~p~a~~~~~---~~al~~g~~vVigTTG~~~ 142 (303)
+|++|-++....+.+.+ ...+..+..+|.-.-|+..
T Consensus 73 ~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 73 CDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred CCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 89998776544444333 3334344445554448764
No 280
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.11 E-value=0.36 Score=45.86 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=41.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
-.+|+|+|. |+||+.+++.+. .-++++.+ +|+.. .+ .++ ..+.++++++. ++|+|+-.
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~-afG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~~ 180 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAK-AFGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLIS 180 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEEC
Confidence 368999997 999999999665 45898875 56532 11 112 12568999984 79998865
Q ss_pred C
Q 022057 114 T 114 (303)
Q Consensus 114 T 114 (303)
.
T Consensus 181 l 181 (303)
T PRK06436 181 L 181 (303)
T ss_pred C
Confidence 4
No 281
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.07 E-value=0.4 Score=43.31 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=50.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
||+++|+|. |+||..++..+. ..++|++-.-.+. .+..+.+- +..+..+ -.+.+++. ...|||+-.
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a-~ag~eV~igs~r~---~~~~~a~a--~~l~~~i~~~~~~dA~------~~aDVVvLA 67 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLA-KAGHEVIIGSSRG---PKALAAAA--AALGPLITGGSNEDAA------ALADVVVLA 67 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHH-hCCCeEEEecCCC---hhHHHHHH--HhhccccccCChHHHH------hcCCEEEEe
Confidence 688999996 999999999887 4678877543322 11111110 1122222 23455555 368999965
Q ss_pred CCchhHHHHHHHHHH-c-CCCeE
Q 022057 114 TDASTVYDNVKQATA-F-GMRSV 134 (303)
Q Consensus 114 T~p~a~~~~~~~al~-~-g~~vV 134 (303)
.+-+...+.+..... . ||=||
T Consensus 68 VP~~a~~~v~~~l~~~~~~KIvI 90 (211)
T COG2085 68 VPFEAIPDVLAELRDALGGKIVI 90 (211)
T ss_pred ccHHHHHhHHHHHHHHhCCeEEE
Confidence 565666666665543 3 34444
No 282
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.05 E-value=0.2 Score=50.88 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=26.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
.||+|+|+ |.||+.|+..+. ..+++++ ++|.+
T Consensus 6 ~kV~VIGa-G~MG~gIA~~la-~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGA-GAMGAGIAQVAA-SAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 57999998 999999999887 4588887 46753
No 283
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=94.03 E-value=0.72 Score=46.49 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=56.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
.++.|+|+ |.-|+.+++.+.+++ +++++|.+|.+..+ . ...|+|+..+.+++... ......|++|-.
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~------~i~gvPVlg~~d~l~~~-~~~~~v~vIIAi 215 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASD---A------EINMLPVIKDTEIIWDL-NRTGDVHYILAY 215 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccc---c------ccCCCcccCCHHHHHHH-HHhCCCcEEEEe
Confidence 57999998 999999999998765 78999999864311 1 12467777665433110 011356765543
Q ss_pred CC--chhHHHHHHHHHHcCCCeE
Q 022057 114 TD--ASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 114 T~--p~a~~~~~~~al~~g~~vV 134 (303)
.. .+...+.+..+.+.|+.-|
T Consensus 216 p~~~~~~r~~il~~l~~~gv~~V 238 (476)
T PRK15204 216 EYTELEKTHFWLRELSKHHCRSV 238 (476)
T ss_pred CcCcHHHHHHHHHHHhhcCCeEE
Confidence 32 2344577888888888533
No 284
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.01 E-value=0.14 Score=49.07 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=56.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
.+++|+|+ |.+|+.++..+....+++-+.+++++. ..+..++. +.+.+++ ..++|+++++. ++|+||-
T Consensus 133 ~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi~ 203 (330)
T PRK08291 133 SRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIVT 203 (330)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEEE
Confidence 58999998 999999999888656778888888652 22222221 0012344 34789999884 7899987
Q ss_pred cCCchhHHHHHH-HHHHcCCCeE
Q 022057 113 FTDASTVYDNVK-QATAFGMRSV 134 (303)
Q Consensus 113 fT~p~a~~~~~~-~al~~g~~vV 134 (303)
.|+.. .+.+. ..++.|.++.
T Consensus 204 aT~s~--~p~i~~~~l~~g~~v~ 224 (330)
T PRK08291 204 TTPSE--EPILKAEWLHPGLHVT 224 (330)
T ss_pred eeCCC--CcEecHHHcCCCceEE
Confidence 76432 12332 2356777654
No 285
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.01 E-value=0.17 Score=43.94 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=42.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |++|+.+++.+. .=++++.+ +|+.. .+.... ...++ -+.++++++. .+|+|+-..
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~~~~~----~~~~~-~~~~l~ell~------~aDiv~~~~ 99 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLK-AFGMRVIG-YDRSP--KPEEGA----DEFGV-EYVSLDELLA------QADIVSLHL 99 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHH-HTT-EEEE-EESSC--HHHHHH----HHTTE-EESSHHHHHH------H-SEEEE-S
T ss_pred CCEEEEEEE-cCCcCeEeeeee-cCCceeEE-ecccC--Chhhhc----ccccc-eeeehhhhcc------hhhhhhhhh
Confidence 368999998 999999999887 56888776 66542 111101 12334 3568999995 699988654
No 286
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=93.97 E-value=0.23 Score=45.97 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=73.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeee-----cCCHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPV-----MSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v-----~~dl~~~l~~~~~~~~~DV 109 (303)
|||.|.|.| .=|+.+++.+.+... -++.++ .+. |.+.. ... ....+.+ .+.+.+.+.+ .++|.
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~-t~~-g~~~~~~~~---~~~~v~~G~lg~~~~l~~~l~~----~~i~~ 69 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVA-TSY-GGELLKPEL---PGLEVRVGRLGDEEGLAEFLRE----NGIDA 69 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEE-hhh-hHhhhcccc---CCceEEECCCCCHHHHHHHHHh----CCCcE
Confidence 689999985 778999998886554 222222 211 11111 000 0011111 2345555553 78999
Q ss_pred EEEcCCchhH---HHHHHHHHHcCCCeE-EeCCCCC---------HHHHHHHHHHhhhcC-CeEEEcCCCcHHHHHHHHH
Q 022057 110 VIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQ---------LETVSALSAFCDKAS-MGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 110 vIDfT~p~a~---~~~~~~al~~g~~vV-igTTG~~---------~e~~~~L~~~a~~~~-i~vv~a~N~SiGv~ll~~~ 175 (303)
|||.|||-+. ......|.+.|+|.+ ..=+.|. -+..++..+++.+.+ -.+++ .+|..-|..+
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~f 145 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPPF 145 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHHH
Confidence 9999999654 556678899999988 2222221 122333444443323 56665 8999888888
Q ss_pred HH
Q 022057 176 AI 177 (303)
Q Consensus 176 a~ 177 (303)
..
T Consensus 146 ~~ 147 (249)
T PF02571_consen 146 VP 147 (249)
T ss_pred hh
Confidence 65
No 287
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.93 E-value=0.51 Score=46.94 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=26.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
+|||+|+|. |.||..++..+.+ ++++++ +|.+
T Consensus 6 ~mkI~vIGl-GyvGlpmA~~la~--~~~V~g-~D~~ 37 (425)
T PRK15182 6 EVKIAIIGL-GYVGLPLAVEFGK--SRQVVG-FDVN 37 (425)
T ss_pred CCeEEEECc-CcchHHHHHHHhc--CCEEEE-EeCC
Confidence 479999996 9999999998764 588876 7753
No 288
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.92 E-value=0.15 Score=47.56 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=64.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eeecCCHHHHHhccccCCCccEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
..++.|+|+ |++|+.++..+.. .++.=+-+++++. ..+..++....... +.+..+..+.+ .++|+||..
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~-~g~~~V~v~~R~~--~~a~~l~~~~~~~~~~~~~~~~~~~~------~~~DivIna 192 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLD-LGVAEITIVNRTV--ERAEELAKLFGALGKAELDLELQEEL------ADFDLIINA 192 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHHHhhhccceeecccchhcc------ccCCEEEEC
Confidence 358999998 9999999999885 4533344566542 22222221000111 22211333444 478999988
Q ss_pred CCchhHH-----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH-HHHHHHHHh
Q 022057 114 TDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISA 179 (303)
Q Consensus 114 T~p~a~~-----~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~-ll~~~a~~~ 179 (303)
|+..... +.....+..+ .+|+-. -+++.. -.+.+.|++.|.+++- |.. |+.|.+.++
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~Di-vY~P~~-T~ll~~A~~~G~~~~~------G~~Ml~~Qa~~~f 255 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPG-TIVYDM-IYGPLP-TPFLAWAKAQGARTID------GLGMLVHQAAEAF 255 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCC-CEEEEe-ecCCCC-CHHHHHHHHCcCeecC------CHHHHHHHHHHHH
Confidence 8533211 1112333333 333321 222222 3477778888887552 443 345555444
No 289
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.92 E-value=0.34 Score=48.52 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=76.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCC-----------CCC-CeeecCCH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDME-----------QPL-EIPVMSDL 94 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~-----------~~~-gv~v~~dl 94 (303)
-.||+|-|+ |++|+..++.+. +.+..|+++.|+ ++.|-|...+ .... ..+ +.... +.
T Consensus 228 g~~vaIQGf-GnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~ 304 (445)
T PRK14030 228 GKTVAISGF-GNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AG 304 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CC
Confidence 369999997 999999999886 579999998774 2335554431 1000 011 22222 23
Q ss_pred HHHHhccccCCCccEEEEcCCchh-HHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 95 TMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDfT~p~a-~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
++++. .++||+|=+..... ..+++....+++..+|+|-. +.+..+..++ + +++ .+++.|-+..
T Consensus 305 ~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i--L-~~r--GI~~vPD~~a 369 (445)
T PRK14030 305 KKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK--F-IAA--KQLFAPGKAV 369 (445)
T ss_pred cccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH--H-HHC--CCEEeCccee
Confidence 55554 58999997765444 47888888889999999976 4433232222 2 443 4566676643
No 290
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.88 E-value=0.5 Score=47.41 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=83.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCC-------CC-----CCeeecCCH
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-------QP-----LEIPVMSDL 94 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~---~g~~-------~~-----~gv~v~~dl 94 (303)
-.+|+|-|+ |++|+..++.+. +.+..++++.|++ ..|-|..++ .... .. .+.... +.
T Consensus 237 Gk~VaVqG~-GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~ 313 (454)
T PTZ00079 237 GKTVVVSGS-GNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PG 313 (454)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CC
Confidence 369999997 999999999887 5799999999863 335554333 1000 00 022222 22
Q ss_pred HHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH---H
Q 022057 95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---G 168 (303)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si---G 168 (303)
++++. .++||++=+...... .+++....+++..+|++-. + .+++. .+-+ +++ .+++.|-+.. |
T Consensus 314 ~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA---~~~L-~~~--GI~~~PD~~aNAGG 382 (454)
T PTZ00079 314 KKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA---THLF-KKN--GVIFCPGKAANAGG 382 (454)
T ss_pred cCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH---HHHH-HHC--CcEEEChhhhcCCC
Confidence 34443 589999977654444 7888888899999999876 3 44532 2222 343 4577676643 2
Q ss_pred HHH-HHHHHHHhccCCCcE
Q 022057 169 SIL-LQQAAISASFHYKNV 186 (303)
Q Consensus 169 v~l-l~~~a~~~~~~~~di 186 (303)
|.+ -.+..+....+.|+.
T Consensus 383 V~vS~~E~~Qn~~~~~W~~ 401 (454)
T PTZ00079 383 VAISGLEMSQNAARLQWTA 401 (454)
T ss_pred eeeehHHhhhhhcccCCCH
Confidence 211 133344555555544
No 291
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.82 E-value=0.17 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA 58 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~ 58 (303)
++||+|+|++|++|..++-.+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 499999998899999999988754
No 292
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.79 E-value=0.34 Score=46.57 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
++|+|+|+ |+||+.+++.+. .-++++++ +|+... .. .. .+....++++++ .++|+|+...+
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~-~~G~~V~~-~d~~~~-~~-~~--------~~~~~~~l~ell------~~aDiVil~lP 207 (330)
T PRK12480 147 MTVAIIGT-GRIGAATAKIYA-GFGATITA-YDAYPN-KD-LD--------FLTYKDSVKEAI------KDADIISLHVP 207 (330)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCEEEE-EeCChh-Hh-hh--------hhhccCCHHHHH------hcCCEEEEeCC
Confidence 68999998 999999999887 46888875 565421 00 00 112345789998 47999986653
No 293
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=93.77 E-value=0.46 Score=46.24 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=61.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC----------C---------cchhhhhcCCCCCCeeec---
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV----------G---------EDIGMVCDMEQPLEIPVM--- 91 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~----------g---------~d~~~~~g~~~~~gv~v~--- 91 (303)
|.|+.|.|.||-+|..-.+.+.+.|+ +++++..-.... . ....++-... + ++.++
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~-~-~~~v~~G~ 78 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLL-P-GTEVLVGE 78 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhc-c-CceEEecH
Confidence 57999999999999999999998887 689887652110 0 0000110000 0 12222
Q ss_pred CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
..+.++.. ..++|+|+..-.-.+...-...++++|+.+-...
T Consensus 79 ~~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLAN 120 (385)
T COG0743 79 EGLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALAN 120 (385)
T ss_pred HHHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecc
Confidence 23444443 2678988877666666666677888888887653
No 294
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.74 E-value=0.78 Score=41.41 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
|+||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEec
Confidence 46999999999999999999875 5788887654
No 295
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.73 E-value=0.26 Score=47.07 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=25.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
|||+|+|++|++|..++-.+...+-..=+..+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 59999998899999999888755543323356653
No 296
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.72 E-value=0.31 Score=50.81 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.1
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEE
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEV 63 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eL 63 (303)
.++|||.|.|++|-+|+.+++.+.+ .+.++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v 407 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEK-QGIAY 407 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHh-CCCeE
Confidence 3468999999999999999998875 46676
No 297
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.72 E-value=2.7 Score=39.70 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~ 69 (303)
.+|.|.|++|.+|+.+++.+.+.. ..+++. +++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~-~~r 38 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIII-YSR 38 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE-EcC
Confidence 589999999999999999998753 356664 443
No 298
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.70 E-value=0.32 Score=48.28 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=46.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
-+|+|+|+ |.+|+.+++.+. .-+++++. +|.+. ... +.+ ...|+.+. ++++++ ..+|++|++|.
T Consensus 203 ktVvViG~-G~IG~~va~~ak-~~Ga~ViV-~d~d~--~R~-~~A---~~~G~~~~-~~~e~v------~~aDVVI~atG 266 (413)
T cd00401 203 KVAVVAGY-GDVGKGCAQSLR-GQGARVIV-TEVDP--ICA-LQA---AMEGYEVM-TMEEAV------KEGDIFVTTTG 266 (413)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EECCh--hhH-HHH---HhcCCEEc-cHHHHH------cCCCEEEECCC
Confidence 58999998 999999999776 45777654 66542 111 111 12344322 345555 35777777764
Q ss_pred chhHHH-HHHHHHHcCCCe
Q 022057 116 ASTVYD-NVKQATAFGMRS 133 (303)
Q Consensus 116 p~a~~~-~~~~al~~g~~v 133 (303)
...... -...+++.|.-+
T Consensus 267 ~~~~i~~~~l~~mk~Ggil 285 (413)
T cd00401 267 NKDIITGEHFEQMKDGAIV 285 (413)
T ss_pred CHHHHHHHHHhcCCCCcEE
Confidence 333322 223444444433
No 299
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.69 E-value=0.92 Score=35.44 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=51.4
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC--
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-- 114 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-- 114 (303)
+|.|+|+.-++-..+-+.+. .-+.++... .++. +.. +-...++..+ .++|+||-+|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~~-~~~-------------~~~~~l~~~i------~~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRDG-GDE-------------KKASRLPSKI------KKADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecCC-CCc-------------cchhHHHHhc------CCCCEEEEEeCC
Confidence 58899943388888888666 467777765 2221 100 0001134455 4789988777
Q ss_pred -CchhHHHHHHHHHHcCCCeEEeC-CCCC
Q 022057 115 -DASTVYDNVKQATAFGMRSVVYV-PHIQ 141 (303)
Q Consensus 115 -~p~a~~~~~~~al~~g~~vVigT-TG~~ 141 (303)
+.......-+.|.+.++|++.-. +|++
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 44555666677778888888776 4665
No 300
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.66 E-value=0.5 Score=45.36 Aligned_cols=63 Identities=25% Similarity=0.233 Sum_probs=44.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
..|||+|+ |++|+.+++.++ .=+|++.+ +|+.. .++.. ...++.-..+++++++ .+|+++-..
T Consensus 143 kTvGIiG~-G~IG~~va~~l~-afgm~v~~-~d~~~-~~~~~------~~~~~~~~~~Ld~lL~------~sDiv~lh~ 205 (324)
T COG0111 143 KTVGIIGL-GRIGRAVAKRLK-AFGMKVIG-YDPYS-PRERA------GVDGVVGVDSLDELLA------EADILTLHL 205 (324)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCeEEE-ECCCC-chhhh------ccccceecccHHHHHh------hCCEEEEcC
Confidence 58999998 999999999776 45899886 67621 12111 1234444678999995 799988554
No 301
>PRK14852 hypothetical protein; Provisional
Probab=93.64 E-value=0.34 Score=52.77 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=25.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
..||+|+|+ |+.|..+++.+.. .|+.=.-++|
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAr-aGVG~I~L~D 363 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLAR-TGIGNFNLAD 363 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence 468999999 9999999998884 4554445565
No 302
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.62 E-value=0.31 Score=46.55 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=42.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcC-CCCCCeeecCCHHHHHhccccCCCcc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARA 108 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~D 108 (303)
.+||+|+|+ |.||..++..+....-.+ +..+|.+. .|. |....... +....+..++|++ .+ .++|
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l------~~AD 75 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DI------KDSD 75 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-Hh------CCCC
Confidence 369999998 999999999877543256 66788642 111 11111100 0112333457887 44 4899
Q ss_pred EEEEcC
Q 022057 109 VVIDFT 114 (303)
Q Consensus 109 VvIDfT 114 (303)
+||...
T Consensus 76 iVVita 81 (319)
T PTZ00117 76 VVVITA 81 (319)
T ss_pred EEEECC
Confidence 988654
No 303
>PRK06988 putative formyltransferase; Provisional
Probab=93.61 E-value=0.15 Score=48.67 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=47.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CC----cchhhhhcCCCCCCeeecC--CH-----HHHHhc
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG----EDIGMVCDMEQPLEIPVMS--DL-----TMVLGS 100 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g----~d~~~~~g~~~~~gv~v~~--dl-----~~~l~~ 100 (303)
|||||+++|. +.+|....+.+.+ .++++++++..+. .+ .+..+++ .+.++|++. ++ .+.+.
T Consensus 1 ~~mkIvf~Gs-~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~- 74 (312)
T PRK06988 1 MKPRAVVFAY-HNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVA- 74 (312)
T ss_pred CCcEEEEEeC-cHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHH-
Confidence 6789999995 9999999998875 5789998886421 11 1233444 356777743 22 22333
Q ss_pred cccCCCccEEEEcC
Q 022057 101 ISQSKARAVVIDFT 114 (303)
Q Consensus 101 ~~~~~~~DVvIDfT 114 (303)
..++|++|-+.
T Consensus 75 ---~~~~Dliv~~~ 85 (312)
T PRK06988 75 ---AAAPDFIFSFY 85 (312)
T ss_pred ---hcCCCEEEEeh
Confidence 25899888765
No 304
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.61 E-value=0.14 Score=50.72 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..+|+|+|+ |.||+.+++.+.. .+.+-+-+++++. ..+..++ ..++ +..+.++.+.+ .++|+||.
T Consensus 182 ~~~vlViGa-G~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVI~ 248 (423)
T PRK00045 182 GKKVLVIGA-GEMGELVAKHLAE-KGVRKITVANRTL--ERAEELA---EEFGGEAIPLDELPEAL------AEADIVIS 248 (423)
T ss_pred CCEEEEECc-hHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHH---HHcCCcEeeHHHHHHHh------ccCCEEEE
Confidence 368999998 9999999998874 4664445566542 2222233 1222 22234555565 47899999
Q ss_pred cCC-chhH--HHHHHHHH
Q 022057 113 FTD-ASTV--YDNVKQAT 127 (303)
Q Consensus 113 fT~-p~a~--~~~~~~al 127 (303)
+|. |+.. .+.+..++
T Consensus 249 aT~s~~~~i~~~~l~~~~ 266 (423)
T PRK00045 249 STGAPHPIIGKGMVERAL 266 (423)
T ss_pred CCCCCCcEEcHHHHHHHH
Confidence 884 3333 45555544
No 305
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=93.59 E-value=0.45 Score=47.37 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
.|||.|.|++|-+|+.+++.+.+ .+.++++ +|+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~-ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIV-IDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHH-CCCEEEE-EeC
Confidence 47999999999999999999886 4788887 443
No 306
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.49 E-value=0.25 Score=46.49 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=25.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|+||+|+|+ |.||..++..+....-.+|+ .+|.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~ 34 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVV-LFDI 34 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEEC
Confidence 579999998 99999999988754312655 4675
No 307
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.48 E-value=2.7 Score=41.58 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-C-HHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVvIDf 113 (303)
.+|.|+|. |++|..+++.+. ..+.++++ .|....-.....+-. ...|+.++. . .++.+ .++|+||-.
T Consensus 6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~--~~~gi~~~~g~~~~~~~------~~~d~vv~s 74 (445)
T PRK04308 6 KKILVAGL-GGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGK--MFDGLVFYTGRLKDALD------NGFDILALS 74 (445)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhh--ccCCcEEEeCCCCHHHH------hCCCEEEEC
Confidence 58999998 999999988776 56788765 664321111111110 013555532 2 22233 368988854
Q ss_pred CCchhHHHHHHHHHHcCCCeE-----------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057 114 TDASTVYDNVKQATAFGMRSV-----------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vV-----------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~ 174 (303)
+.-....+.++.|.++|+|++ |+-||-+-. -..-|..+-+..+.......|+ |..++..
T Consensus 75 pgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~~~ 152 (445)
T PRK04308 75 PGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVLEA 152 (445)
T ss_pred CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHHHH
Confidence 422222344555555555543 344443211 1123344444455555666774 4433332
Q ss_pred HHHHhccCCCcEEEEEc
Q 022057 175 AAISASFHYKNVEIVES 191 (303)
Q Consensus 175 ~a~~~~~~~~dieIiE~ 191 (303)
+.... ....|+-|+|.
T Consensus 153 ~~~~~-~~~~d~~VlE~ 168 (445)
T PRK04308 153 ELQRE-GKKADVWVLEL 168 (445)
T ss_pred HHhhc-CCCCcEEEEEe
Confidence 22111 12356777776
No 308
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.45 E-value=1 Score=43.23 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=27.5
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
..|.||+|+|+.|++|+.++..+....-..-+..+|.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3477999999889999999998875544433345665
No 309
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.45 E-value=0.24 Score=49.07 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=51.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
.+|+|+|+ |.||+.+++.+.. .++.-+-+++++. ..+.+++. ..+. ..+.++.+.+ ..+|+||.+
T Consensus 181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l------~~aDvVi~a 247 (417)
T TIGR01035 181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYL------AEADIVISS 247 (417)
T ss_pred CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHH------hhCCEEEEC
Confidence 68999998 9999999998876 4633344566542 22222331 2221 1234566666 479999998
Q ss_pred CC-chhH--HHHHHHHHHcC-CC-eEE
Q 022057 114 TD-ASTV--YDNVKQATAFG-MR-SVV 135 (303)
Q Consensus 114 T~-p~a~--~~~~~~al~~g-~~-vVi 135 (303)
|. |+.. .+.+..+...+ .| +++
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~vi 274 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFII 274 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEE
Confidence 73 4433 45566554432 44 443
No 310
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.45 E-value=0.37 Score=41.87 Aligned_cols=149 Identities=12% Similarity=0.131 Sum_probs=78.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.+|+|+|+ |..|+.++..+. +.+++++-...... .. -+.+ .+-|..++ +++|+.. .+|+|+-.++
T Consensus 5 k~IAViGy-GsQG~a~AlNLr-DSG~~V~Vglr~~s--~s-~~~A---~~~Gf~v~-~~~eAv~------~aDvV~~L~P 69 (165)
T PF07991_consen 5 KTIAVIGY-GSQGHAHALNLR-DSGVNVIVGLREGS--AS-WEKA---KADGFEVM-SVAEAVK------KADVVMLLLP 69 (165)
T ss_dssp SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTC--HH-HHHH---HHTT-ECC-EHHHHHH------C-SEEEE-S-
T ss_pred CEEEEECC-ChHHHHHHHHHH-hCCCCEEEEecCCC--cC-HHHH---HHCCCeec-cHHHHHh------hCCEEEEeCC
Confidence 58999998 999999999887 57888886665432 11 1111 13344443 5777774 7999886554
Q ss_pred chhHH----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057 116 ASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 191 (303)
Q Consensus 116 p~a~~----~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~ 191 (303)
-+... +.+.-.++-|.-++. ..||+- .+..|. -..++-++..+-=+.|..+=..+.+ .+=.+-.--++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni-~~~~i~---pp~~vdV~mvAPKgpG~~vR~~y~~--G~Gvp~l~AV~- 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI-HYGLIK---PPKDVDVIMVAPKGPGHLVRREYVE--GRGVPALIAVH- 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH-HCTTS------TTSEEEEEEESSSCHHHHHHHHC--CTS--EEEEEE-
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh-hcCccc---CCCCCeEEEEecCCCChHHHHHHHc--CCCceEEEEEE-
Confidence 33333 444556677775553 468764 222222 2234666655555677755444442 11123222222
Q ss_pred cCCCCCCCcHHHHHHHHHHHh
Q 022057 192 RPNARDFPSPDATQIANNLSN 212 (303)
Q Consensus 192 Hh~K~DaPSGTA~~l~~~i~~ 212 (303)
.| +||.|+.++-+++.
T Consensus 142 ----qD-~sg~A~~~ala~A~ 157 (165)
T PF07991_consen 142 ----QD-ASGKAKELALAYAK 157 (165)
T ss_dssp ----E--SSS-HHHHHHHHHH
T ss_pred ----EC-CCchHHHHHHHHHH
Confidence 34 78999999988875
No 311
>PLN00203 glutamyl-tRNA reductase
Probab=93.43 E-value=0.21 Score=50.91 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=50.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
..||+|+|+ |.||+.+++.+.. .+.+=+-+++++. ..+..+........+ ..++++.+.+ .++|+||-
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al------~~aDVVIs 335 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACA------AEADVVFT 335 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHH------hcCCEEEE
Confidence 468999998 9999999998875 4654445566642 233333310001112 2245666666 47999998
Q ss_pred cC---CchhHHHHHHHHH
Q 022057 113 FT---DASTVYDNVKQAT 127 (303)
Q Consensus 113 fT---~p~a~~~~~~~al 127 (303)
+| .|-...+.++.+.
T Consensus 336 AT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 336 STSSETPLFLKEHVEALP 353 (519)
T ss_pred ccCCCCCeeCHHHHHHhh
Confidence 76 3333466666654
No 312
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.38 E-value=0.43 Score=47.67 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCc-----EEEEEEecCC-----CC-------cchh----hh-----hcCCCCCCeee
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VG-------EDIG----MV-----CDMEQPLEIPV 90 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~-----eLvg~vd~~~-----~g-------~d~~----~~-----~g~~~~~gv~v 90 (303)
||.|+|| |.+|..+++.+. ..|+ .-+-++|.+. .+ .|+| +. ..+.....+..
T Consensus 1 kVlvVGa-GGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEECC-CHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 6899998 999999999887 4566 4555677321 11 1111 11 01111122222
Q ss_pred cC-CH---------HHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeC
Q 022057 91 MS-DL---------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 91 ~~-dl---------~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigT 137 (303)
+. .+ ++.+ .++|+||++. ++++-...-..|..+++|+|-+-
T Consensus 79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESG 130 (435)
T ss_pred EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 21 11 1233 3689999987 55665667789999999999653
No 313
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.63 Score=42.62 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=51.6
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID 112 (303)
|+.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. .. ++++.+ ...+ +..|
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~-~G~~Vi~~-~r~~--~~------------------~~~l~~-----~~~~~~~~D 55 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQS-DGWRVFAT-CRKE--ED------------------VAALEA-----EGLEAFQLD 55 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HH------------------HHHHHH-----CCceEEEcc
Confidence 345799999999999999998875 68887764 3321 11 112211 1233 3458
Q ss_pred cCCchhHHHHHHHHHHc---CCCeEEeCCC
Q 022057 113 FTDASTVYDNVKQATAF---GMRSVVYVPH 139 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~---g~~vVigTTG 139 (303)
.+.++.....+..+.+. ++++|+-..|
T Consensus 56 l~d~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 56 YAEPESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred CCCHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 88888877777766542 5788877655
No 314
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.29 E-value=0.45 Score=45.98 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=27.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
.+||.|.|++|-+|+.+++.+.+ .+.++.++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKA-EGHYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHh-CCCEEEEEE
Confidence 48999999999999999999886 578888754
No 315
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=93.20 E-value=0.42 Score=48.80 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=45.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.+|+|+|. |+||+.+++.+. .-++++.+ +|+... .+.. ...++...++++++++ .+|+|+-..+
T Consensus 139 ktvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP 202 (525)
T TIGR01327 139 KTLGVIGL-GRIGSIVAKRAK-AFGMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHTP 202 (525)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEccC
Confidence 68999997 999999999887 45888875 665311 1111 1345555678999984 7999886553
No 316
>PRK12320 hypothetical protein; Provisional
Probab=93.20 E-value=0.58 Score=49.44 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=52.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ec---C--CHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---S--DLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~--dl~~~l~~~~~~~~~DV 109 (303)
|||.|.|++|.+|+.+++.+.+ .+.++++...... +. . ..++. +. . .+.+++ .++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~---~~---~----~~~ve~v~~Dl~d~~l~~al------~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPH---DA---L----DPRVDYVCASLRNPVLQELA------GEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChh---hc---c----cCCceEEEccCCCHHHHHHh------cCCCE
Confidence 4899999999999999998874 5788887543211 00 0 00111 11 1 133344 36899
Q ss_pred EEEcCCch----------hHHHHHHHHHHcCCCeEEeC
Q 022057 110 VIDFTDAS----------TVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 110 vIDfT~p~----------a~~~~~~~al~~g~~vVigT 137 (303)
||.+..+. .....+..|.++|+.+|.-.
T Consensus 64 VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S 101 (699)
T PRK12320 64 VIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS 101 (699)
T ss_pred EEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 99987432 13345677778888766533
No 317
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.14 E-value=0.57 Score=46.95 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=70.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhh----------c----CCCCCCeeecCCHHH
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC----------D----MEQPLEIPVMSDLTM 96 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~----------g----~~~~~gv~v~~dl~~ 96 (303)
.||+|.|+ |++|+..++.+. +.+..|+++.|.+ ..|-|..++. + .....++... +.++
T Consensus 229 ~rVaVQGf-GNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~ 305 (444)
T PRK14031 229 KVCLVSGS-GNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGAR 305 (444)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcc
Confidence 68999997 999999999887 5799999998842 2244443221 0 0001122222 3345
Q ss_pred HHhccccCCCccEEEEcCCchh-HHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 97 VLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p~a-~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
++. .++||++=+..... ..+++......|+-+|++-- +.+..+ ..+.+.+ + .+++.|-+.
T Consensus 306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~e--A~~~L~~-r--gI~~~PD~~ 367 (444)
T PRK14031 306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPE--AIKVFQD-A--KILYAPGKA 367 (444)
T ss_pred ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHH--HHHHHHH-C--CcEEeChhh
Confidence 554 57899986654433 36777777777888888755 433222 2233333 3 345556553
No 318
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.26 Score=48.36 Aligned_cols=125 Identities=16% Similarity=0.114 Sum_probs=85.7
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e---cCCHHHHHhccccCCCccE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V---MSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v---~~dl~~~l~~~~~~~~~DV 109 (303)
++-+|.+.|+ |.+.+-.++.+.++.+.++.-+.+.- .++.++.. ...+. + ..+.+..+.. ...+-|+
T Consensus 1 ~~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~--~v~~~D~ 71 (445)
T KOG0172|consen 1 TKKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRK--EVKPLDL 71 (445)
T ss_pred CCcceEEecC-ccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHh--hhcccce
Confidence 3568999997 99999999999999999998776542 34444432 11121 1 1122212211 0146799
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
+|--++...+.-.++.|..++.++| |+.+-..++++|.+.+...|+.++=---.-+|+
T Consensus 72 viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGi 129 (445)
T KOG0172|consen 72 VISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGI 129 (445)
T ss_pred eeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcch
Confidence 9977777777888899999999988 456766788999999999887766333345555
No 319
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.13 E-value=0.39 Score=44.45 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=26.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLE-QGEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHH-CCCEEEEEEe
Confidence 4799999999999999999885 4678776543
No 320
>PRK09135 pteridine reductase; Provisional
Probab=93.05 E-value=4.4 Score=35.67 Aligned_cols=172 Identities=18% Similarity=0.139 Sum_probs=90.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++++..+.. .....+ .+.+.+. ...... +..|.+
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~~--~~~~~~---------------~~~~~~~-~~~~~~~~~~Dl~ 67 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHA-AGYRVAIHYHRSA--AEADAL---------------AAELNAL-RPGSAAALQADLL 67 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHhh-cCCceEEEEcCCC
Confidence 5799999999999999999885 5788876543221 001110 0111100 000122 345788
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCCCH------HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcE
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~~~------e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~di 186 (303)
.++.....+..+.+. ++.+|+-..|... ...+.+++ .+..|+.--+++++.+...+.+...-+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~---------~~~~n~~g~~~l~~~~~~~~~~~~~~~ 138 (249)
T PRK09135 68 DPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDD---------LFASNLKAPFFLSQAAAPQLRKQRGAI 138 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHH---------HHHHhchhHHHHHHHHHHHHhhCCeEE
Confidence 887777766655443 4678888776321 11122222 233455555566666554443221111
Q ss_pred E-EEEccC---CCCCCCcHHHHHHHHHHHh-cCcccccCcccccccccCccccCCceeEEEEEcCCCceeE
Q 022057 187 E-IVESRP---NARDFPSPDATQIANNLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSST 252 (303)
Q Consensus 187 e-IiE~Hh---~K~DaPSGTA~~l~~~i~~-~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H 252 (303)
- +...+. .+...|-|.++..++.+.+ +... .+ ..+.+..+|.|.+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~----------------~~-~~i~~~~v~pg~~~~~~ 192 (249)
T PRK09135 139 VNITDIHAERPLKGYPVYCAAKAALEMLTRSLALE----------------LA-PEVRVNAVAPGAILWPE 192 (249)
T ss_pred EEEeChhhcCCCCCchhHHHHHHHHHHHHHHHHHH----------------HC-CCCeEEEEEeccccCcc
Confidence 1 122222 2344556777766665543 1110 01 24778889988887654
No 321
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=93.02 E-value=0.26 Score=46.68 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|.||.|.|++|-+|+.+++.+.+ .+.+++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~ 34 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK 34 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence 46899999999999999999985 46666666664
No 322
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.99 E-value=0.78 Score=41.75 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=52.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
|.++.|.|++|.+|+.+++.+.+ .+.+|+.. +++. .+ ++++.+ ...+ +..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~------------------~~~~~~-----~~~~~~~~Dl 53 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKA-AGYEVWAT-ARKA--ED------------------VEALAA-----AGFTAVQLDV 53 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HH------------------HHHHHH-----CCCeEEEeeC
Confidence 35799999999999999998874 57887754 4321 11 112221 1233 34788
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++...+.+..+.+. ++++|+=..|.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 54 NDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 9888888877776553 57888877663
No 323
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.98 E-value=0.76 Score=42.11 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcC-CcEEEEE
Q 022057 37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~ 66 (303)
||.|.|++|.+|+.+++.+.+.. +.++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 58999999999999999988654 4777753
No 324
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.95 E-value=2 Score=43.09 Aligned_cols=141 Identities=21% Similarity=0.147 Sum_probs=78.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-C-HHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVvID 112 (303)
++||+|+|. |+-|+..++.+.+ .+.++. +.|.+........... ...++.+.. + ..+.+ ..+|+||-
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~-~G~~v~-v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~~~~------~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLK-LGAEVT-VSDDRPAPEGLAAQPL--LLEGIEVELGSHDDEDL------AEFDLVVK 75 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHH-CCCeEE-EEcCCCCccchhhhhh--hccCceeecCccchhcc------ccCCEEEE
Confidence 579999997 9999999998874 567665 4663221110000000 123343321 1 11222 47898884
Q ss_pred cC-CchhHHHHHHHHHHcCCCeE---------------EeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057 113 FT-DASTVYDNVKQATAFGMRSV---------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (303)
Q Consensus 113 fT-~p~a~~~~~~~al~~g~~vV---------------igTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~ 174 (303)
.- -|-. .+.+..|.+.|++++ ++-||-+- --...|..+.++.|.+...+.|...++ +..
T Consensus 76 SPGi~~~-~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--l~~ 152 (448)
T COG0771 76 SPGIPPT-HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--LEL 152 (448)
T ss_pred CCCCCCC-CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--HHh
Confidence 32 1222 224555555555544 34454331 134567778888999999999998887 322
Q ss_pred HHHHhccCCCcEEEEEcc
Q 022057 175 AAISASFHYKNVEIVESR 192 (303)
Q Consensus 175 ~a~~~~~~~~dieIiE~H 192 (303)
+.. ...+|+-++|.-
T Consensus 153 ~~~---~~~~d~~VlElS 167 (448)
T COG0771 153 LEQ---AEPADVYVLELS 167 (448)
T ss_pred hcc---cCCCCEEEEEcc
Confidence 222 123567777764
No 325
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.93 E-value=0.5 Score=46.15 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
++||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEe
Confidence 47999999999999999999875 5788887653
No 326
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=92.93 E-value=0.37 Score=42.94 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=52.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvID 112 (303)
||.+|.|.|++|.+|+.+++.+.+ .+.+++....++. +....+ .+.+.. ...++ -+..|
T Consensus 1 m~k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D 60 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAA-RGWSVGINYARDA--AAAEET---------------ADAVRA--AGGRACVVAGD 60 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEec
Confidence 567899999999999999999885 5788765443321 111110 111110 00112 23467
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPH 139 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG 139 (303)
.+.++...+.+..+.+. ++++|+-..|
T Consensus 61 l~~~~~~~~~~~~~~~~~~~id~li~~ag 89 (248)
T PRK06947 61 VANEADVIAMFDAVQSAFGRLDALVNNAG 89 (248)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 88888887777766543 4778886665
No 327
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.92 E-value=0.59 Score=46.07 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=79.5
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh-hhcCCCCCCeeecCCHHHHH
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM-VCDMEQPLEIPVMSDLTMVL 98 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~~~-~~g~~~~~gv~v~~dl~~~l 98 (303)
.|.++|+|+|. |-+|--++-+.+ ..++.++| +|.+ ..|+ +..+ +...-.......++|.+++
T Consensus 7 ~~~~~I~ViGL-GYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l- 82 (436)
T COG0677 7 NMSATIGVIGL-GYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL- 82 (436)
T ss_pred CCceEEEEEcc-ccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-
Confidence 34589999997 999999998766 57899998 4521 1121 1111 1000012335667787776
Q ss_pred hccccCCCccEEEEcCC-------------chhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHH----hhhcCCe
Q 022057 99 GSISQSKARAVVIDFTD-------------ASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF----CDKASMG 158 (303)
Q Consensus 99 ~~~~~~~~~DVvIDfT~-------------p~a~~~~~~~al~~g~~vVigTT---G~~~e~~~~L~~~----a~~~~i~ 158 (303)
..+|++|.+-+ -+.+.+.+...++.|-=||+++| |-+++-...|.+. .-.....
T Consensus 83 ------~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~ 156 (436)
T COG0677 83 ------KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY 156 (436)
T ss_pred ------ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee
Confidence 47899886531 23445666778889999999987 7777665555543 1112356
Q ss_pred EEEcCCCcHHHHHH
Q 022057 159 CLIAPTLSIGSILL 172 (303)
Q Consensus 159 vv~a~N~SiGv~ll 172 (303)
+-+||-=-.-.|.+
T Consensus 157 laysPERv~PG~~~ 170 (436)
T COG0677 157 LAYSPERVLPGNVL 170 (436)
T ss_pred EeeCccccCCCchh
Confidence 66766544444433
No 328
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.84 E-value=0.57 Score=44.41 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=26.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
|||+|+|+ |.+|..++..+....-..-+..+|.+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 48999998 99999999988765433445578864
No 329
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=92.79 E-value=1.1 Score=44.78 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=70.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
.-+|.|+|+ |.+|..+++.+. .+|+.=+-++|.... ..|.+. +... +..|-+-.....+.+.+ -++||-+
T Consensus 20 ~s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~e----LNp~V~i 92 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQE----LNPDVNG 92 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHHH----HCCCCEE
Confidence 368999998 899999999987 688876677875321 112111 0000 01111111112223332 4788877
Q ss_pred EcC--CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 112 DFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 112 DfT--~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
++. .++...+..... =.+-.+||.|+ .+......|.++|.+.++|++.+..++.
T Consensus 93 ~~~~e~~~~ll~~~~~f-~~~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G~ 148 (425)
T cd01493 93 SAVEESPEALLDNDPSF-FSQFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYGL 148 (425)
T ss_pred EEEecccchhhhhHHHH-hcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEecccC
Confidence 764 333333222221 23557888654 4555667788999999999887665443
No 330
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.70 E-value=0.81 Score=45.10 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=67.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCCCCCC-eeecCCHHHHHhcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSI 101 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~ 101 (303)
|||.|+|. |-+|-..+-.++ +-++++++ +|.+ ....-+.++.......| ...++|++++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA-~~GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~-- 75 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLA-ELGHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK-- 75 (414)
T ss_pred CceEEECC-chHHHHHHHHHH-HcCCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence 79999996 999999987666 45789887 4421 11112233332111122 667889998884
Q ss_pred ccCCCccEEEEcC--Cch--h--HHHHHHHHHH------cCCCeEEeCC----CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057 102 SQSKARAVVIDFT--DAS--T--VYDNVKQATA------FGMRSVVYVP----HIQLETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 102 ~~~~~~DVvIDfT--~p~--a--~~~~~~~al~------~g~~vVigTT----G~~~e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
+.|+++.++ ++. . -..+++.+++ .+.++|+.++ |.+++-.+.+.+........++..|=|
T Consensus 76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 789888764 221 1 1222222222 2336666653 777655455554443333445555544
No 331
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.63 E-value=0.69 Score=46.10 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
+||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l 149 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV 149 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHH-CcCEEEEE
Confidence 7999999999999999999886 47888864
No 332
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=92.60 E-value=0.88 Score=42.45 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=23.2
Q ss_pred EEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 40 V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|.|++|-+|+.+++.+.++....=|-++|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 789999999999999998765333445664
No 333
>PLN02602 lactate dehydrogenase
Probab=92.56 E-value=0.49 Score=45.90 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=41.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (303)
.||+|+|+ |++|..++-.+...+-..=+..+|.+. .| .|+...+.......+....+++++ .++|+|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~-------~daDiV 109 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVT-------AGSDLC 109 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHh-------CCCCEE
Confidence 69999998 999999999887655443345677532 11 122221111011222223577764 589998
Q ss_pred EEcC
Q 022057 111 IDFT 114 (303)
Q Consensus 111 IDfT 114 (303)
|-..
T Consensus 110 VitA 113 (350)
T PLN02602 110 IVTA 113 (350)
T ss_pred EECC
Confidence 8653
No 334
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.54 E-value=0.68 Score=44.27 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.3
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
||.|+|+ |.+|.++++.+. ..|+.-+-++|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDL 31 (312)
T ss_pred CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcC
Confidence 6899998 999999999987 467777778884
No 335
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.54 E-value=0.51 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR 59 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~ 59 (303)
+||+|+|++|++|+.++..+...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 589999999999999999887543
No 336
>PLN02214 cinnamoyl-CoA reductase
Probab=92.54 E-value=0.91 Score=43.24 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.2
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
++++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r 42 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR 42 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence 356899999999999999998875 5788887553
No 337
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.48 E-value=0.22 Score=49.41 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=45.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
.||.|+|+ |.||+.+++.+.. .+..-+-+++++. ..+..++. .++ +..++++.+.+ .++|+||.
T Consensus 182 kkvlviGa-G~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~---~~~~~~~~~~~~l~~~l------~~aDiVI~ 248 (414)
T PRK13940 182 KNVLIIGA-GQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITS---AFRNASAHYLSELPQLI------KKADIIIA 248 (414)
T ss_pred CEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHH---HhcCCeEecHHHHHHHh------ccCCEEEE
Confidence 58999998 9999999999875 4544455666542 23333432 222 22246666666 47999998
Q ss_pred cC-CchhH
Q 022057 113 FT-DASTV 119 (303)
Q Consensus 113 fT-~p~a~ 119 (303)
+| .|..+
T Consensus 249 aT~a~~~v 256 (414)
T PRK13940 249 AVNVLEYI 256 (414)
T ss_pred CcCCCCee
Confidence 88 34443
No 338
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.48 E-value=0.35 Score=46.35 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=42.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|||+|+ |++|+.+++.+...=++++++ .|+... .+.. ...++. +.+++++++ .+|+|+-..
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~~-~~~~~~-~~~~------~~~~~~-~~~l~ell~------~sDvv~lh~ 208 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNMPILY-NARRHH-KEAE------ERFNAR-YCDLDTLLQ------ESDFVCIIL 208 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhH------HhcCcE-ecCHHHHHH------hCCEEEEeC
Confidence 378999997 999999999875245888774 554321 1111 123333 458999994 799988644
No 339
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.48 E-value=2.3 Score=41.77 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=64.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCeeecC--CHHHHHhccccCCCccEEE
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~---~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVvI 111 (303)
||.++|. |+.|..+++.+. ..+.++.+ .|.... .+.. .+.. ...|+.++. + .+.+ .++|+||
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~~-sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~-~~~~------~~~d~vv 67 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLH-KKGAEVTV-TDLKPN-EELEPSMGQLR--LNEGSVLHTGLH-LEDL------NNADLVV 67 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHH-HCCCEEEE-EeCCCC-ccchhHHHHHh--hccCcEEEecCc-hHHh------ccCCEEE
Confidence 5899998 999999998766 56888764 774321 1111 1110 123665542 3 3344 3689887
Q ss_pred EcCC-chhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 112 DfT~-p~a~~~~~~~al~~g~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
-.+. |.. .+.+..|.+.|+|++ |+-||-.- --...|..+-+..+..++...|+..
T Consensus 68 ~sp~i~~~-~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~ 139 (433)
T TIGR01087 68 KSPGIPPD-HPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139 (433)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence 5442 332 344555666666654 44454321 1122344444555556677788644
No 340
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.46 E-value=0.77 Score=43.77 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=24.3
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
||.|+|+ |..|..+++.+.. .++.=+-++|
T Consensus 1 kVLIvGa-GGLGs~vA~~La~-aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLG-WGVRHITFVD 30 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEC
Confidence 6899999 9999999999874 5665555666
No 341
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.42 E-value=0.74 Score=40.59 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=51.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDf 113 (303)
|.++.|.|++|.+|+.+++.+.+ .+.+|+. ++++. .+..++ ++. .+. -..+|+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~-------~~~~~~~~D~ 54 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLE-RGWQVTA-TVRGP--QQDTAL---------------QAL-------PGVHIEKLDM 54 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHh-CCCEEEE-EeCCC--cchHHH---------------Hhc-------cccceEEcCC
Confidence 35799999999999999999885 5788765 44432 111111 010 011 124578
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~ 140 (303)
+.++...+.+....+.++++|+=..|.
T Consensus 55 ~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 55 NDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 888887777776665678888866654
No 342
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.38 E-value=1.2 Score=39.63 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=52.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHH-HHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTM-VLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~-~l~~~~~~~~~DVvIDf 113 (303)
.||.|+|+ |+||...++.+.+ .+.+++ +++++. ...+.+++. ...+.. ...+++ .+ .++|+||-+
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l------~~adlViaa 77 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI------VDAFLVIAA 77 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc------CCceEEEEc
Confidence 58999998 9999999988875 446665 344432 223333331 112222 112222 23 478999988
Q ss_pred CCchhHHHHHHHHHHcCCCeEEe
Q 022057 114 TDASTVYDNVKQATAFGMRSVVY 136 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVig 136 (303)
|.-+.....+...++.++.+-+.
T Consensus 78 T~d~elN~~i~~~a~~~~lvn~~ 100 (202)
T PRK06718 78 TNDPRVNEQVKEDLPENALFNVI 100 (202)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEC
Confidence 87666666555555777766543
No 343
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.35 E-value=0.54 Score=49.09 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=25.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
..||.|+|| |..|..+++.+.. -|+.=+.++|
T Consensus 338 ~~kVLIvGa-GGLGs~VA~~La~-~GVg~ItlVD 369 (664)
T TIGR01381 338 QLKVLLLGA-GTLGCNVARCLIG-WGVRHITFVD 369 (664)
T ss_pred cCeEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence 368999999 9999999998874 5665555666
No 344
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.24 E-value=0.43 Score=46.84 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=41.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|||+|+ |+||+.+++.+. .=|+++.+ +|+... +.+ .. ..+.++++++. ++|+|+-.+
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~-a~G~~V~~-~dp~~~--~~~--------~~-~~~~~L~ell~------~sDiI~lh~ 175 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLE-ALGIKTLL-CDPPRA--DRG--------DE-GDFRSLDELVQ------EADILTFHT 175 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCccc--ccc--------cc-cccCCHHHHHh------hCCEEEEeC
Confidence 368999998 999999999877 46898876 565321 100 00 12567899884 689887544
No 345
>PLN02494 adenosylhomocysteinase
Probab=92.21 E-value=0.87 Score=45.95 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=55.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |++|+.+++.+.. -+++++. ++.+.. ...+.. ..|..+. ++++++ ..+|++|+.|
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka-~Ga~VIV-~e~dp~--r~~eA~----~~G~~vv-~leEal------~~ADVVI~tT 317 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKA-AGARVIV-TEIDPI--CALQAL----MEGYQVL-TLEDVV------SEADIFVTTT 317 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch--hhHHHH----hcCCeec-cHHHHH------hhCCEEEECC
Confidence 368999998 9999999998874 4787654 654321 111111 2233332 577877 3789999876
Q ss_pred Cchh-HHHHHHHHHHcCCCeEEeCCCC-C-HHHHHHHHHH
Q 022057 115 DAST-VYDNVKQATAFGMRSVVYVPHI-Q-LETVSALSAF 151 (303)
Q Consensus 115 ~p~a-~~~~~~~al~~g~~vVigTTG~-~-~e~~~~L~~~ 151 (303)
.... ........++.|--+ ...|. . +-+.+.|.++
T Consensus 318 Gt~~vI~~e~L~~MK~GAiL--iNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 318 GNKDIIMVDHMRKMKNNAIV--CNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCccchHHHHHhcCCCCCEE--EEcCCCCCccCHHHHhhc
Confidence 5433 223333334444333 33443 2 2234556555
No 346
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.16 E-value=0.39 Score=45.42 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=24.5
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~ 70 (303)
||+|+|+ |.+|+.++..+....-. +|+ ++|.+
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~ 34 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDIN 34 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 8999998 99999999988765433 544 56753
No 347
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=92.15 E-value=0.3 Score=47.30 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=61.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhh-hhcCCCCCCeeec---
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGM-VCDMEQPLEIPVM--- 91 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d----~~~-~~g~~~~~gv~v~--- 91 (303)
-.|.|+|| |+.|--.+..+.. .++-=.|++|.+. .|+. +.. +-.+.+...|..|
T Consensus 67 s~VLVVGa-GGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~ 144 (427)
T KOG2017|consen 67 SSVLVVGA-GGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF 144 (427)
T ss_pred ccEEEEcc-CCCCCHHHHHHHH-cCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence 57999999 9999999998774 5666678887421 1111 000 0111122223222
Q ss_pred ---CCHHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCC
Q 022057 92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTT 138 (303)
++..+++ ...|||.|+|. +..-+=.-..|.-.|+|+|+|..
T Consensus 145 L~~sNa~~Ii------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa 189 (427)
T KOG2017|consen 145 LSSSNAFDII------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA 189 (427)
T ss_pred ccchhHHHHh------hccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence 3455566 47999999995 44446666899999999999975
No 348
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.13 E-value=0.73 Score=43.97 Aligned_cols=150 Identities=21% Similarity=0.210 Sum_probs=84.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC---CCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---EQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~---~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
|+|.|.|..|-+|+..+..+.+ .+.+++ ++|.-..|... .+.-. .-..++.=..-+++++++ .++|.||.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~-~v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKI-ALLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHH-HhhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence 5899999999999999998885 788877 57742222211 11100 000011111235566654 78999999
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCC-eEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM-GCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 191 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i-~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~ 191 (303)
|.--..+-|-+..=++.=-+=|.||- .|.+++++.|+ .+++|+. |... ..-..+-|.|.
T Consensus 74 FAa~~~VgESv~~Pl~Yy~NNv~gTl--------~Ll~am~~~gv~~~vFSSt-----------AavY-G~p~~~PI~E~ 133 (329)
T COG1087 74 FAASISVGESVQNPLKYYDNNVVGTL--------NLIEAMLQTGVKKFIFSST-----------AAVY-GEPTTSPISET 133 (329)
T ss_pred CccccccchhhhCHHHHHhhchHhHH--------HHHHHHHHhCCCEEEEecc-----------hhhc-CCCCCcccCCC
Confidence 98544433333222222222244541 34455555554 4444432 1111 11134678999
Q ss_pred cCCCCCCCcHHHHHHHHHHHh
Q 022057 192 RPNARDFPSPDATQIANNLSN 212 (303)
Q Consensus 192 Hh~K~DaPSGTA~~l~~~i~~ 212 (303)
|....-.|=|..+.+.|.|-.
T Consensus 134 ~~~~p~NPYG~sKlm~E~iL~ 154 (329)
T COG1087 134 SPLAPINPYGRSKLMSEEILR 154 (329)
T ss_pred CCCCCCCcchhHHHHHHHHHH
Confidence 986677799999999998744
No 349
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.12 E-value=0.51 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHh
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTK 57 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~ 57 (303)
++||+|+|++|++|..++-.+..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~ 24 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh
Confidence 47999999889999999987774
No 350
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=92.05 E-value=0.95 Score=41.70 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=23.4
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (303)
|.|.|++|-+|+.+++.+.+. +. ++++ +++
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence 579999999999999999865 44 5554 554
No 351
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=91.95 E-value=0.94 Score=45.13 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=53.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID 112 (303)
|+|||.|+|. |.=...++..+.+. +.++..+......|. ..++ ..+ +.+ ..|++++++ .++..++|.||-
T Consensus 1 ~~~kVLvlG~-G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~-~~~~~~d~e~l~~-~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGS-GGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKY-LFYDEKDYDLIED-FALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cce-eecCCCCHHHHHH-HHHHhCCCEEEE
Confidence 7899999997 87778888777765 467777654221110 0011 011 111 246666443 223467898875
Q ss_pred cCCchhHHHHHHHHHHcCCCeE
Q 022057 113 FTDASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vV 134 (303)
...+......+....+.|++++
T Consensus 72 ~~d~~l~~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 72 GPDPVLATPLVNNLLKRGIKVA 93 (435)
T ss_pred CCChHHHHHHHHHHHHCCCcEE
Confidence 5443344455566677888865
No 352
>PRK06182 short chain dehydrogenase; Validated
Probab=91.86 E-value=2.2 Score=38.73 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=52.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+.++++. +++. .. ++++.. .... +..|.+
T Consensus 4 k~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~------------------l~~~~~-----~~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAA-QGYTVYGA-ARRV--DK------------------MEDLAS-----LGVHPLSLDVT 56 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HH------------------HHHHHh-----CCCeEEEeeCC
Confidence 5799999999999999998875 68888764 3321 11 111111 1232 456889
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++.....+....+. ++++|+-..|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 57 DEASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 888887777766554 68888877764
No 353
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.84 E-value=0.33 Score=46.95 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (303)
.+|.|+|++|.||+.+++.+....+. +|+ ++++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 58999999999999999999754333 444 3444
No 354
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.84 E-value=1.1 Score=42.03 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
|||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence 5899999999999999998885 57888874
No 355
>PLN02240 UDP-glucose 4-epimerase
Probab=91.63 E-value=1.3 Score=41.76 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
+.||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 46899999999999999999885 468887753
No 356
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.61 E-value=1 Score=47.59 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=27.0
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
...||+|+|+ |-||+.|+..++...+++++- +|.
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~l-~d~ 336 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGIPVRI-KDI 336 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCCeEEE-EeC
Confidence 3468999998 999999998776557887764 664
No 357
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=91.47 E-value=0.61 Score=42.81 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 40 V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|.|++|-+|+.+++.+.+. +.+++.+..... .++.-..+++++++. .++|+||.+.
T Consensus 2 ItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~--------------~Dl~~~~~l~~~~~~----~~~d~Vih~A 57 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKE--------------LDLTRQADVEAFFAK----EKPTYVILAA 57 (306)
T ss_pred cccCCCcccHHHHHHHHhC-CCcEEEeecccc--------------CCCCCHHHHHHHHhc----cCCCEEEEee
Confidence 7899999999999999864 566654432211 122223456666653 4689999985
No 358
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.46 E-value=2.4 Score=43.43 Aligned_cols=127 Identities=8% Similarity=0.064 Sum_probs=65.6
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC--HHHHHhccccCCCccE
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKARAV 109 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~~DV 109 (303)
++.=+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.+. +...++. +.+.++ +.| -++.+++ ..-+++|+
T Consensus 415 ~~~~hiiI~G~-G~~G~~la~~L~~-~g~~vv-vId~d~--~~~~~~~----~~g~~~i~GD~~~~~~L~~-a~i~~a~~ 484 (558)
T PRK10669 415 DICNHALLVGY-GRVGSLLGEKLLA-AGIPLV-VIETSR--TRVDELR----ERGIRAVLGNAANEEIMQL-AHLDCARW 484 (558)
T ss_pred ccCCCEEEECC-ChHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHHH----HCCCeEEEcCCCCHHHHHh-cCccccCE
Confidence 44457999998 9999999998874 456665 467542 1222221 234433 221 1223321 11246786
Q ss_pred EEEcCCchhH-HHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057 110 VIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (303)
Q Consensus 110 vIDfT~p~a~-~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~ 175 (303)
+|-.++-+.. ...+..+.+. .+++|.=. -++++.+.+ ++.|+..++.|..-++-.+.+.+
T Consensus 485 viv~~~~~~~~~~iv~~~~~~~~~~~iiar~--~~~~~~~~l----~~~Gad~vv~p~~~~a~~i~~~l 547 (558)
T PRK10669 485 LLLTIPNGYEAGEIVASAREKRPDIEIIARA--HYDDEVAYI----TERGANQVVMGEREIARTMLELL 547 (558)
T ss_pred EEEEcCChHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHH----HHcCCCEEEChHHHHHHHHHHHh
Confidence 6644433222 2233333332 24444322 244444444 34567778877766665444443
No 359
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=91.42 E-value=1.1 Score=45.16 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=40.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |++|+.+++.+. .-+++++ +++++.. ...+.. ..|+.+ .++++++ ..+|++|..+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~--~a~~A~----~~G~~~-~~leell------~~ADIVI~at 317 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALR-GFGARVV-VTEIDPI--CALQAA----MEGYQV-VTLEDVV------ETADIFVTAT 317 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCch--hHHHHH----hcCcee-ccHHHHH------hcCCEEEECC
Confidence 368999998 999999999887 4678755 4544321 110101 123332 3577877 3789988664
No 360
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.41 E-value=0.53 Score=44.87 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
.||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 69999998 99999999988866544334467853
No 361
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.37 E-value=0.84 Score=43.67 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=51.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee---ecC--CHHHHHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMS--DLTMVLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~---v~~--dl~~~l~~~~~~~~~DVv 110 (303)
-+|.|.|++|.+|...++.+.. -+...+++..++. ... ++ .++|.. .|. |+.+.+.++.....+|+|
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~-~G~~~v~~~~s~~---k~~-~~---~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKA-LGATVVAVVSSSE---KLE-LL---KELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHH-cCCcEEEEecCHH---HHH-HH---HhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 3699999999999999997664 4546666665431 111 11 122211 111 133333221112246666
Q ss_pred EEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057 111 IDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (303)
Q Consensus 111 IDfT~p~a~~~~~~~al~~g~~vVigTTG 139 (303)
+|....+...+.+......|.=+.+|.++
T Consensus 216 ~D~vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 216 LDTVGGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EECCCHHHHHHHHHHhccCCEEEEEecCC
Confidence 66666666666555555555555566553
No 362
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.36 E-value=1.6 Score=41.47 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=27.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
+||.|.|++|-+|+.+++.+.+ .+.++++. ++
T Consensus 5 k~ilItGatG~IG~~l~~~L~~-~G~~V~~~-~r 36 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLE-LGAEVYGY-SL 36 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHH-CCCEEEEE-eC
Confidence 6899999999999999999885 57888764 44
No 363
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=91.35 E-value=2.2 Score=34.05 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=21.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
|||.|+|. |.=-.+++..+.+++..+-+.+.
T Consensus 1 MkVLviGs-GgREHAia~~l~~s~~v~~v~~a 31 (100)
T PF02844_consen 1 MKVLVIGS-GGREHAIAWKLSQSPSVEEVYVA 31 (100)
T ss_dssp EEEEEEES-SHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCCCEEEEe
Confidence 79999995 84445567777777776544433
No 364
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.32 E-value=6.6 Score=38.84 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=65.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeecC--CHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVvID 112 (303)
=-|+|+|. |+.|..+++.+. ..+.++++ .|..........+. .. .|++++. .-.+.+ .++|+||-
T Consensus 7 ~~~~v~G~-G~sG~s~a~~L~-~~G~~v~~-~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~------~~~d~vV~ 74 (448)
T PRK03803 7 GLHIVVGL-GKTGLSVVRFLA-RQGIPFAV-MDSREQPPGLDTLA---REFPDVELRCGGFDCELL------VQASEIII 74 (448)
T ss_pred CeEEEEee-cHhHHHHHHHHH-hCCCeEEE-EeCCCCchhHHHHH---hhcCCcEEEeCCCChHHh------cCCCEEEE
Confidence 35899998 999999888666 56887664 77532111111221 11 3666632 123344 36898875
Q ss_pred cCC-chhHHHHHHHHHHcCCCeE--------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 113 FTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 113 fT~-p~a~~~~~~~al~~g~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
.+. |. ..+.+..|.++|+|++ |+-||-.-. -...|..+-++.|..++...|+....
T Consensus 75 sp~i~~-~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 75 SPGLAL-DTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred CCCCCC-CCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 442 22 2334555556666554 344443211 12234444455666778888855443
No 365
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.28 E-value=0.88 Score=43.64 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR 59 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~ 59 (303)
++||+|+|++|.+|..++-.+...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 5999999988999999998887554
No 366
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.27 E-value=0.63 Score=43.07 Aligned_cols=127 Identities=20% Similarity=0.128 Sum_probs=64.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
..++.|+|+ |.||+.++..+.+. +.++. +++++. ..+.+++......+.....++++... .++|+||.+|
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~-g~~v~-v~~R~~--~~~~~la~~~~~~~~~~~~~~~~~~~-----~~~DivInat 186 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKA-DCNVI-IANRTV--SKAEELAERFQRYGEIQAFSMDELPL-----HRVDLIINAT 186 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHHHHhhcCceEEechhhhcc-----cCccEEEECC
Confidence 358999998 99999999988854 56654 556542 12222221101112111123333221 3689999888
Q ss_pred Cchh---HH--HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057 115 DAST---VY--DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (303)
Q Consensus 115 ~p~a---~~--~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~ 179 (303)
+... .. ......++.+. +|+-..-...+. .+.+.|++.|.+++- .+++ |+.|.+.++
T Consensus 187 p~gm~~~~~~~~~~~~~l~~~~-~v~D~~y~p~~T--~ll~~A~~~G~~~vd----G~~M-l~~Qa~~~f 248 (270)
T TIGR00507 187 SAGMSGNIDEPPVPAEKLKEGM-VVYDMVYNPGET--PFLAEAKSLGTKTID----GLGM-LVAQAALAF 248 (270)
T ss_pred CCCCCCCCCCCCCCHHHcCCCC-EEEEeccCCCCC--HHHHHHHHCCCeeeC----CHHH-HHHHHHHHH
Confidence 5321 10 11123344444 343322111111 477788888887553 2222 345555444
No 367
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=91.27 E-value=1.5 Score=45.70 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=76.7
Q ss_pred eeEEEEcCCcH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
--|+|+|++++ +|+.+.+.+.+..+-++..+ .+.. .+ -.|++.|++..++- ..+|+.|-
T Consensus 11 ~svavigas~~~~~vg~~i~~nL~~~g~g~i~PV-np~~-----~~------v~G~~ay~s~~~lp------~~~dlav~ 72 (598)
T COG1042 11 KSIAVIGASERPGKLGYEILRNLLEYGQGKIYPV-NPKY-----DE------VLGVKAYTSVADLP------DAPDLAVI 72 (598)
T ss_pred ceEEEeeccCCcchhHHHHHHHHHhcCCCceEec-Cccc-----cc------cccccccchHhhCC------CCCCeeEE
Confidence 46999998866 67778888776553344432 2211 12 24678888888775 47999999
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEe-CCCCCH------HHHHHHHHHhhhcCCeEEEcCCC
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVY-VPHIQL------ETVSALSAFCDKASMGCLIAPTL 165 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVig-TTG~~~------e~~~~L~~~a~~~~i~vv~a~N~ 165 (303)
.+++..+.+.++.|-+.|+...+- +-||.+ +-.+++.++|++.++. ++.||-
T Consensus 73 ~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r-ligPn~ 131 (598)
T COG1042 73 VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR-IIGPNC 131 (598)
T ss_pred EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce-Eecccc
Confidence 999999999999999999755544 447653 2223455578877776 667884
No 368
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.22 E-value=2.4 Score=37.12 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=48.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDfT 114 (303)
.+|.|.|++|.+|+.+++.+.+ .+.++ .+++++. .+...+ .+.+.. ...++.. ..|++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~-~g~~v-~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~~ 64 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAA-DGAKV-VIYDSNE--EAAEAL---------------AAELRA--AGGEARVLVFDVS 64 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEE-EEEeCCh--hHHHHH---------------HHHHHh--cCCceEEEEccCC
Confidence 6899999999999999999885 47775 4455432 111110 011110 0012222 25788
Q ss_pred CchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATA--FGMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~--~g~~vVigTTG~ 140 (303)
.++...+.+....+ ..++.|+-..|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 65 DEAAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88777666654433 356777776653
No 369
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=91.21 E-value=0.85 Score=39.93 Aligned_cols=31 Identities=39% Similarity=0.434 Sum_probs=24.9
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
|.|+|++|-+|+.+++.+.+ .+.+++....+
T Consensus 1 IlI~GatG~iG~~l~~~l~~-~g~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLK-KGHEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTTEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHH-cCCcccccccc
Confidence 68999999999999999884 56777754443
No 370
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.18 E-value=1 Score=42.95 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=25.4
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
||+|+|++|++|..++-.+....-..=...+|.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIA 34 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 7999999899999999988766433333457754
No 371
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.17 E-value=0.59 Score=44.86 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=68.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCCCCCCeeecCCHHH-HHhccccCCCccE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV 109 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLv---g~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DV 109 (303)
.++|+| |+||..|+.+.+.+.+ .++.+- ..-.. ...|+... +.| ..+.+. ++++ .+ .++|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Lee-r~fpv~~l~l~~s~~~s~gk~i~-f~g----~~~~V~-~l~~~~f------~~vDi 68 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQ-SDLEIEQISIVEIEPFGEEQGIR-FNN----KAVEQI-APEEVEW------ADFNY 68 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHh-cCCchhheeecccccccCCCEEE-ECC----EEEEEE-ECCccCc------ccCCE
Confidence 479999 9999999999997664 455322 11111 12232221 111 122221 1222 23 47999
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeEEeCCCC-------------CHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vVigTTG~-------------~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ 170 (303)
++ |+..+...+....+.++|..||--+..| +++. +..+- + -.++-.||=|.-..
T Consensus 69 a~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~---l~~~~-~--~~IIanPNCsTi~l 135 (322)
T PRK06901 69 VF-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQ---LAELR-Q--RNIVSLPDPQVSQL 135 (322)
T ss_pred EE-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHH---HhcCc-C--CCEEECCcHHHHHH
Confidence 88 5777888999999999999888665443 3333 22221 2 24788899776553
No 372
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=91.14 E-value=0.66 Score=42.75 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=41.6
Q ss_pred EEEEcCCcHHHHHHHHHHHhcC--C-cEEEEEEecCC---C--CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057 38 VIINGAVKEIGRAAVIAVTKAR--G-MEVAGAIDSHS---V--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~--~-~eLvg~vd~~~---~--g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (303)
|+|+|+.|.||..++..+...+ . .+| ..+|.+. . ..|+...........+..++|+++.+ .++|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el-~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~------~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF------KDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEE-EEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh------CCCCE
Confidence 6899988999999999887654 2 344 4567532 0 11222222110023455567877777 48999
Q ss_pred EEEc
Q 022057 110 VIDF 113 (303)
Q Consensus 110 vIDf 113 (303)
||..
T Consensus 74 Vv~t 77 (263)
T cd00650 74 VIIT 77 (263)
T ss_pred EEEC
Confidence 9863
No 373
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.09 E-value=1.5 Score=42.99 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=40.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+|||+|+ |+||+.+++.+. .-|+++.+ +|+... .. . +..-+.+++++++ ++|+|+-..
T Consensus 117 ktvGIIG~-G~IG~~va~~l~-a~G~~V~~-~Dp~~~--~~--------~-~~~~~~~l~ell~------~aDiV~lh~ 175 (381)
T PRK00257 117 RTYGVVGA-GHVGGRLVRVLR-GLGWKVLV-CDPPRQ--EA--------E-GDGDFVSLERILE------ECDVISLHT 175 (381)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-ECCccc--cc--------c-cCccccCHHHHHh------hCCEEEEeC
Confidence 68999998 999999999877 46888875 565321 00 0 1112457888884 688887544
No 374
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.08 E-value=1.3 Score=40.13 Aligned_cols=30 Identities=37% Similarity=0.445 Sum_probs=25.3
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeC
Confidence 57999999999999999885 5789887654
No 375
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=91.07 E-value=0.47 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=31.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
+.||+|.|+.|++||-+.-.+..+|.+.-.+.+|.
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 68999999999999999998888998877788884
No 376
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.05 E-value=4.8 Score=38.18 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=25.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (303)
|||+|+|++|.+|..++..+...+-. +|+. +|+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence 68999999899999999988865433 4554 454
No 377
>PRK05884 short chain dehydrogenase; Provisional
Probab=91.03 E-value=1.9 Score=38.32 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=25.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
||+.|.|++|++|+.+++.+.+ .+.+++..
T Consensus 1 m~vlItGas~giG~~ia~~l~~-~g~~v~~~ 30 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRN-DGHKVTLV 30 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHH-CCCEEEEE
Confidence 4899999999999999999874 57787764
No 378
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.99 E-value=1.3 Score=40.20 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=50.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhhcCCCCCC-eeecCCHHHHHhcccc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSISQ 103 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~---~g~d------~~~~~g~~~~~g-v~v~~dl~~~l~~~~~ 103 (303)
.||.|+|+ |.+|+.++..+.. .++. =+.++|++. ..+. ..+++. ..+ -....++.+.+
T Consensus 26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l----- 95 (226)
T cd05311 26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEAL----- 95 (226)
T ss_pred CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHH-----
Confidence 58999998 9999999998874 4766 567788751 0110 011221 111 01113666666
Q ss_pred CCCccEEEEcCCchhH-HHHHHHHHHcCCCeEE
Q 022057 104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVV 135 (303)
Q Consensus 104 ~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVi 135 (303)
.++|++|..|++-.. .+.++... ..|+|.
T Consensus 96 -~~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf 125 (226)
T cd05311 96 -KGADVFIGVSRPGVVKKEMIKKMA--KDPIVF 125 (226)
T ss_pred -hcCCEEEeCCCCCCCCHHHHHhhC--CCCEEE
Confidence 369999998864433 34444333 334444
No 379
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.91 E-value=11 Score=33.65 Aligned_cols=173 Identities=17% Similarity=0.089 Sum_probs=88.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
..+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. .....+. +++... .....+. +..|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~-~g~~vi~-~~r~~--~~~~~~~--------------~~~~~~-~~~~~~~~~~~D~ 62 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAE-EGYRVAV-ADINS--EKAANVA--------------QEINAE-YGEGMAYGFGADA 62 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHh-cCCceeEEEEccC
Confidence 34699999999999999999885 5788765 44432 1111110 111100 0001122 44588
Q ss_pred CCchhHHHHHHHHHH--cCCCeEEeCCCCC------HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCc
Q 022057 114 TDASTVYDNVKQATA--FGMRSVVYVPHIQ------LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN 185 (303)
Q Consensus 114 T~p~a~~~~~~~al~--~g~~vVigTTG~~------~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~d 185 (303)
+.++.....+..+.+ .++++|+=+.|.. +...+.+++..+ .|+---.++++.+.+.+.+...+
T Consensus 63 ~~~~~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~---------~n~~~~~~l~~~~~~~l~~~~~~ 133 (259)
T PRK12384 63 TSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQ---------VNLVGYFLCAREFSRLMIRDGIQ 133 (259)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH---------hccHHHHHHHHHHHHHHHhCCCC
Confidence 888877776666544 3567787776632 111122222222 22222334455555544322211
Q ss_pred EEEEEc---c--C-CCCCCCcHHHHHHHHHHHh-cCcccccCcccccccccCccccCCceeEEEEEcCCCcee
Q 022057 186 VEIVES---R--P-NARDFPSPDATQIANNLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSS 251 (303)
Q Consensus 186 ieIiE~---H--h-~K~DaPSGTA~~l~~~i~~-~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~ 251 (303)
--|+=. . . .....|-++++.-.+.+.+ +... +.+.+|+|.++|.|.++..
T Consensus 134 ~~iv~~ss~~~~~~~~~~~~Y~~sKaa~~~l~~~la~e----------------~~~~gi~v~~v~pg~~~~~ 190 (259)
T PRK12384 134 GRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALD----------------LAEYGITVHSLMLGNLLKS 190 (259)
T ss_pred cEEEEecCcccccCCCCCchhHHHHHHHHHHHHHHHHH----------------HHHcCcEEEEEecCCcccc
Confidence 122221 1 1 2344566777765544432 1000 0125699999999987654
No 380
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=90.82 E-value=2 Score=38.43 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=51.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
|+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. .++..+ .+.+. .++. +-.|.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~Dl~ 56 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQ-QGHKVIA-TGRRQ--ERLQEL---------------KDELG-----DNLYIAQLDVR 56 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHhc-----cceEEEEecCC
Confidence 5799999999999999999885 5788765 44431 111111 11111 1232 345888
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++...+.+....+. ++++|+-..|.
T Consensus 57 ~~~~i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 57 NRAAIEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 888877776655543 68888866653
No 381
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.67 E-value=2.3 Score=37.43 Aligned_cols=86 Identities=23% Similarity=0.210 Sum_probs=53.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
+.++.|.|++|.+|+.+++.+.+ .+.+++..++++. ....++ .+.+.. ....+. +..|+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~ 64 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINE--EAAQEL---------------LEEIKE--EGGDAIAVKADV 64 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCeEEEEECCC
Confidence 45899999999999999998874 5888876645431 111111 111110 001233 23588
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++.+.+.+....+. ++++|+-..|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 65 SSEEDVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 8888877766655543 68888877764
No 382
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.64 E-value=0.77 Score=43.75 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=41.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+|+|+|+ |++|+.+++.+. .=++++.+ +|+.. . . .... -+.++++++. .+|+|+-..
T Consensus 148 ktvgIiG~-G~IG~~va~~l~-~fg~~V~~-~~~~~--~--~-------~~~~-~~~~l~ell~------~sDiv~l~~ 205 (314)
T PRK06932 148 STLGVFGK-GCLGTEVGRLAQ-ALGMKVLY-AEHKG--A--S-------VCRE-GYTPFEEVLK------QADIVTLHC 205 (314)
T ss_pred CEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCc--c--c-------cccc-ccCCHHHHHH------hCCEEEEcC
Confidence 68999997 999999999776 45899876 55431 0 0 0111 1458999994 799998654
No 383
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.62 E-value=0.45 Score=44.66 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=42.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC---CCeeecCCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP---LEIPVMSDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~---~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (303)
.||.|+|+ |.+|+.++..+.. .++.=+-++|++. ..+..++.. ... ..+...+++.+.+ .++|+||
T Consensus 128 k~vlIlGa-GGaaraia~aL~~-~G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~~~~~~~~~~~------~~aDiVI 197 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLT-LGVERLTIFDVDP--ARAAALADELNARFPAARATAGSDLAAAL------AAADGLV 197 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHHHhhCCCeEEEeccchHhhh------CCCCEEE
Confidence 58999998 9999999998875 4564466777642 222222210 001 1122234455555 4799999
Q ss_pred EcCC
Q 022057 112 DFTD 115 (303)
Q Consensus 112 DfT~ 115 (303)
..|+
T Consensus 198 naTp 201 (284)
T PRK12549 198 HATP 201 (284)
T ss_pred ECCc
Confidence 9885
No 384
>PRK09134 short chain dehydrogenase; Provisional
Probab=90.62 E-value=4.7 Score=36.12 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=52.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID 112 (303)
++.++.|.|++|.+|+.+++.+.+ .+..++....++. .....+. +++... ....+ +..|
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D 67 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSR--DEAEALA--------------AEIRAL---GRRAVALQAD 67 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHH--------------HHHHhc---CCeEEEEEcC
Confidence 346899999999999999998874 6778876554321 0111100 111100 01233 3457
Q ss_pred cCCchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATA--FGMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~--~g~~vVigTTG~ 140 (303)
.+.++...+.+..+.+ -++++|+-..|.
T Consensus 68 l~d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 68 LADEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 8888877777666554 247888877764
No 385
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.62 E-value=1.3 Score=39.86 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=52.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT 114 (303)
|++.|.|++|.+|+.+++.+.+ .+.+++. ++++. ....+. .+++-+ ..+. -+..|.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~--------------~~~l~~----~~~~~~~~~Dv~ 58 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLK-KGARVVI-SSRNE--ENLEKA--------------LKELKE----YGEVYAVKADLS 58 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHH--------------HHHHHh----cCCceEEEcCCC
Confidence 5899999999999999999875 5777654 44431 111111 011110 0112 2356888
Q ss_pred CchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATA--FGMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~--~g~~vVigTTG~ 140 (303)
.++...+.+..+.+ -++++|+-..|.
T Consensus 59 d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 59 DKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 88888887776655 358888877664
No 386
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.60 E-value=2.3 Score=44.39 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=27.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA 66 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~ 66 (303)
++||.|.|++|-+|+.+++.+.+. ++.++++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 579999999999999999999865 57888754
No 387
>PRK15076 alpha-galactosidase; Provisional
Probab=90.47 E-value=4.1 Score=40.67 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=82.3
Q ss_pred ceeEEEEcCCcHHHHHH--HHHHHh---cCCcEEEEEEecCCCCcc-hhhh----h-cCCCCCCeeecCCHHHHHhcccc
Q 022057 35 NIKVIINGAVKEIGRAA--VIAVTK---ARGMEVAGAIDSHSVGED-IGMV----C-DMEQPLEIPVMSDLTMVLGSISQ 103 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i--~~~i~~---~~~~eLvg~vd~~~~g~d-~~~~----~-g~~~~~gv~v~~dl~~~l~~~~~ 103 (303)
|+||+|+|+ |.||-.. ++.+.. .++.||+ .+|.+..-.+ +..+ . .......+..++|+.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evv-LvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal----- 73 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIA-LMDIDPERLEESEIVARKLAESLGASAKITATTDRREAL----- 73 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh-----
Confidence 479999998 9998443 224432 2334544 5775320001 1111 1 001123455578888887
Q ss_pred CCCccEEEEcCCch--hHH--HHHHHHHHcCCCe-EEeCCC---C-----CH----HHHHHHHHHhhhcCCeEEEcCCCc
Q 022057 104 SKARAVVIDFTDAS--TVY--DNVKQATAFGMRS-VVYVPH---I-----QL----ETVSALSAFCDKASMGCLIAPTLS 166 (303)
Q Consensus 104 ~~~~DVvIDfT~p~--a~~--~~~~~al~~g~~v-VigTTG---~-----~~----e~~~~L~~~a~~~~i~vv~a~N~S 166 (303)
.++|+||...... ... .--+..+++|+-- +..|+| + +- +-.+.|+++|-+ .+++ |||
T Consensus 74 -~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~---a~ii--n~t 147 (431)
T PRK15076 74 -QGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD---ALLL--NYV 147 (431)
T ss_pred -CCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC---eEEE--EcC
Confidence 4899998755332 111 3346678999862 224543 2 11 223334444422 3332 566
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccCCCCCCCcHHHHHHHHHHH
Q 022057 167 IGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS 211 (303)
Q Consensus 167 iGv~ll~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~ 211 (303)
=-+-++.+++. ++ +...++=. -|.|.+|+..+++.+.
T Consensus 148 NP~divt~~~~---~~-~~~rviG~----c~~~~~~~~~ia~~l~ 184 (431)
T PRK15076 148 NPMAMNTWAMN---RY-PGIKTVGL----CHSVQGTAEQLARDLG 184 (431)
T ss_pred ChHHHHHHHHh---cC-CCCCEEEE----CCCHHHHHHHHHHHhC
Confidence 56656666554 22 33344444 3568889988888764
No 388
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.43 E-value=2.5 Score=40.89 Aligned_cols=104 Identities=15% Similarity=0.017 Sum_probs=59.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+|+|+|+ |++|+.+++.+.. =++.+.. ..+. ....... ++... +.|+++++ .++|++|-..
T Consensus 163 K~vgilG~-G~IG~~ia~rL~~-Fg~~i~y-~~r~~~~~~~~~-------~~~~~-~~d~~~~~------~~sD~ivv~~ 225 (336)
T KOG0069|consen 163 KTVGILGL-GRIGKAIAKRLKP-FGCVILY-HSRTQLPPEEAY-------EYYAE-FVDIEELL------ANSDVIVVNC 225 (336)
T ss_pred CEEEEecC-cHHHHHHHHhhhh-ccceeee-ecccCCchhhHH-------Hhccc-ccCHHHHH------hhCCEEEEec
Confidence 68999998 9999999999886 3444433 3322 1111111 11112 45888888 4799888654
Q ss_pred -CchhH--HHHHHHHHHcCCCeEEeCCCCCH-HHHHHHHHHhhhcC
Q 022057 115 -DASTV--YDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDKAS 156 (303)
Q Consensus 115 -~p~a~--~~~~~~al~~g~~vVigTTG~~~-e~~~~L~~~a~~~~ 156 (303)
..+.+ .-+-+.+...+.-+|+=.++--. =+.+.+.++.++..
T Consensus 226 pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~ 271 (336)
T KOG0069|consen 226 PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGK 271 (336)
T ss_pred CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCC
Confidence 22333 34446666777766665553110 01135666666543
No 389
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=90.39 E-value=1.5 Score=43.46 Aligned_cols=117 Identities=18% Similarity=0.253 Sum_probs=68.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeecCCHHHHHhccc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS 102 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-------~~~gv~v~~dl~~~l~~~~ 102 (303)
-.||+|-|. |+.|+..++.+.+. +.+||++-|+. ..|-|...+.... ...+...... ++++.
T Consensus 207 G~rVaVQG~-GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~--- 280 (411)
T COG0334 207 GARVAVQGF-GNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE--- 280 (411)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc---
Confidence 479999997 99999999988755 99999988853 2355543332111 1112222222 56665
Q ss_pred cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
.++||++=+...... .+++..... .+|.|-. |-+..+..++.. +. .+++.|-+..
T Consensus 281 --~~cDIl~PcA~~n~I~~~na~~l~a---k~V~EgAN~P~t~eA~~i~~---er--GIl~~PD~la 337 (411)
T COG0334 281 --VDCDILIPCALENVITEDNADQLKA---KIVVEGANGPTTPEADEILL---ER--GILVVPDILA 337 (411)
T ss_pred --ccCcEEcccccccccchhhHHHhhh---cEEEeccCCCCCHHHHHHHH---HC--CCEEcChhhc
Confidence 589999866544433 445543332 3777755 433233333332 43 5677776643
No 390
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.36 E-value=0.88 Score=43.40 Aligned_cols=57 Identities=18% Similarity=0.026 Sum_probs=40.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+|+|+|+ |++|+.+++.+. .=++++.+ +|+.. .+ ..+. +.++++++. .+|+|+...
T Consensus 149 ktvgIiG~-G~IG~~vA~~l~-~fgm~V~~-~~~~~--~~----------~~~~-~~~l~ell~------~sDiv~l~l 205 (317)
T PRK06487 149 KTLGLLGH-GELGGAVARLAE-AFGMRVLI-GQLPG--RP----------ARPD-RLPLDELLP------QVDALTLHC 205 (317)
T ss_pred CEEEEECC-CHHHHHHHHHHh-hCCCEEEE-ECCCC--Cc----------cccc-ccCHHHHHH------hCCEEEECC
Confidence 68999998 999999999876 45888875 55431 11 0011 347999994 789998654
No 391
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.35 E-value=1.8 Score=45.93 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
.-||+|+|+ |.||+.|+..++ ..+++++ .+|.
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~ 344 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKDI 344 (715)
T ss_pred cceEEEECC-chhHHHHHHHHH-hCCCeEE-EEeC
Confidence 458999998 999999999777 4588776 3664
No 392
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.32 E-value=3.5 Score=40.92 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=82.3
Q ss_pred eeEEEEcCCcHHHHHHHH--HHH---hcCCcEEEEEEecCCC-----Ccchhhhh-cCCCCCCeeecCCHHHHHhccccC
Q 022057 36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS 104 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~--~i~---~~~~~eLvg~vd~~~~-----g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~ 104 (303)
+||+|+|+ |.||...+- .+. ..++.+|+ .+|.+.. ..++.... .......+..++|+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal------ 72 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL------ 72 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh------
Confidence 58999998 999998443 343 34555655 4675320 11111111 111123456688998888
Q ss_pred CCccEEEEcCCchhHHH---HHHHHHHcCCCeEEeCC-C---CC-----HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057 105 KARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP-H---IQ-----LETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (303)
Q Consensus 105 ~~~DVvIDfT~p~a~~~---~~~~al~~g~~vVigTT-G---~~-----~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll 172 (303)
.++|+||....+..... .-+..+++|+---++-| | +. -....+|.+..++. .|=.|.=||+=-+.++
T Consensus 73 ~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~ 151 (423)
T cd05297 73 DGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAEL 151 (423)
T ss_pred cCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHH
Confidence 48999997654433322 22366777765333323 2 11 11122222222221 1223444666666667
Q ss_pred HHHHHHhccCCCcEEEEEccCCCCCCCcHHHHHHHHHHH
Q 022057 173 QQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS 211 (303)
Q Consensus 173 ~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~ 211 (303)
.+++....+ +.++-+= |.|.++...+++.+.
T Consensus 152 t~~~~k~~~----~rviG~c----~~~~~~~~~~a~~l~ 182 (423)
T cd05297 152 TWALNRYTP----IKTVGLC----HGVQGTAEQLAKLLG 182 (423)
T ss_pred HHHHHHhCC----CCEEEEC----CcHHHHHHHHHHHhC
Confidence 666654432 3444442 226677777777664
No 393
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.32 E-value=1.4 Score=38.60 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=51.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
+.+|.|.|++|.+|+.+++.+.+ .+.+++....++. .....+ .+.+.. ...+.. +..|+
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~ 65 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRSDE--EAAEEL---------------VEAVEA--LGRRAQAVQADV 65 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHHH---------------HHHHHh--cCCceEEEECCc
Confidence 46899999999999999998875 5777765554321 110100 111110 001222 34578
Q ss_pred CCchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATA--FGMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~--~g~~vVigTTG~ 140 (303)
+.++.+.+.+....+ .++.+|+=..|.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 94 (249)
T PRK12825 66 TDKAALEAAVAAAVERFGRIDILVNNAGI 94 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 888877776655544 367888876663
No 394
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=90.31 E-value=0.96 Score=43.84 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=23.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
..+|.|.|++|.+|+..++.+.. -++..+..+.
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~-~~~~~v~t~~ 190 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKH-AGAIKVVTAC 190 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHh-cCCcEEEEEc
Confidence 36799999999999999996664 4444444343
No 395
>PRK06823 ornithine cyclodeaminase; Validated
Probab=90.31 E-value=0.61 Score=44.53 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=58.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
-+++|+|+ |.+++.+++++..-..++=+-+++++. ..+..++...+ ...+.+.+|.++++ .++|||+-.
T Consensus 129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av------~~ADIV~ta 199 (315)
T PRK06823 129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVA------HAANLIVTT 199 (315)
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHh------cCCCEEEEe
Confidence 57999997 999999999998877888888888753 22222221111 23345578899988 489999866
Q ss_pred CCchhHHHHH-HHHHHcCCCeE
Q 022057 114 TDASTVYDNV-KQATAFGMRSV 134 (303)
Q Consensus 114 T~p~a~~~~~-~~al~~g~~vV 134 (303)
|+.. .+.+ ...++-|.++.
T Consensus 200 T~s~--~P~~~~~~l~~G~hi~ 219 (315)
T PRK06823 200 TPSR--EPLLQAEDIQPGTHIT 219 (315)
T ss_pred cCCC--CceeCHHHcCCCcEEE
Confidence 6321 1222 23457788866
No 396
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=90.31 E-value=2.2 Score=41.87 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=56.8
Q ss_pred EEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hhcCCCCCCeeecC---CHHH
Q 022057 40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCDMEQPLEIPVMS---DLTM 96 (303)
Q Consensus 40 V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~~~----------------~~g~~~~~gv~v~~---dl~~ 96 (303)
|.|+||-+|+..++.+.+.|+ +++++........ +.+.+ +-......++.++. .+.+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~ 80 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA 80 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence 579999999999999887655 9999987532100 00000 00000001123322 2333
Q ss_pred HHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
+.+ ..++|+|+-...-.+...-...++++|+.+-...
T Consensus 81 l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN 117 (383)
T PRK12464 81 VAT----HPGSDLVLSSVVGAAGLLPTIEALKAKKDIALAN 117 (383)
T ss_pred HHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence 333 2468998877777777777788889998877653
No 397
>PRK05442 malate dehydrogenase; Provisional
Probab=90.30 E-value=0.96 Score=43.45 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHh
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTK 57 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~ 57 (303)
|.||+|+|++|++|..++-.+..
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHh
Confidence 57999999889999999887664
No 398
>PRK06180 short chain dehydrogenase; Provisional
Probab=90.26 E-value=1.4 Score=40.17 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=51.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
+.+|.|.|++|.+|+.+++.+.+ .+++++++ +++. .+...+. +... .... +..|.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~~~l~---------------~~~~-----~~~~~~~~D~ 59 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGT-VRSE--AARADFE---------------ALHP-----DRALARLLDV 59 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh-CcCEEEEE-eCCH--HHHHHHH---------------hhcC-----CCeeEEEccC
Confidence 45799999999999999999875 58887764 4431 1111111 0000 1122 34588
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++...+.+..+.+. ++++|+=..|.
T Consensus 60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 60 TDFDAIDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 8888887777766553 57888776654
No 399
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=90.21 E-value=0.65 Score=43.91 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
|||.|.|++|.+|+.+++.+.+. +.+.+-.++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence 48999999999999999999865 333333354
No 400
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.17 E-value=1.2 Score=45.58 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=43.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|+|+|+ |+||+.+++.+. .-++++.+ +|+... .+ . . ...++... ++++++. .+|+|+-..
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~--~-~---~~~g~~~~-~l~ell~------~aDiV~l~l 202 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAK-AFGMKVIA-YDPYIS-PE--R-A---AQLGVELV-SLDELLA------RADFITLHT 202 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-hCCCEEEE-ECCCCC-hh--H-H---HhcCCEEE-cHHHHHh------hCCEEEEcc
Confidence 368999998 999999999887 46888875 665321 11 1 1 12344444 7999984 789888655
Q ss_pred C
Q 022057 115 D 115 (303)
Q Consensus 115 ~ 115 (303)
+
T Consensus 203 P 203 (526)
T PRK13581 203 P 203 (526)
T ss_pred C
Confidence 3
No 401
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.15 E-value=0.42 Score=45.48 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=50.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-C-CCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-Q-PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
-+++|+|+ |..++.+++++.....++=+-+++++. ..+.+++... . ...+...+|.++++ .++||||-+
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av------~~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAV------RGADIIVTA 199 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHH------TTSSEEEE-
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhc------ccCCEEEEc
Confidence 58999997 999999999998766688888888752 2222222111 1 23455578999998 479999977
Q ss_pred CCchhHHHHH-HHHHHcCCCeE
Q 022057 114 TDASTVYDNV-KQATAFGMRSV 134 (303)
Q Consensus 114 T~p~a~~~~~-~~al~~g~~vV 134 (303)
|+.....+.+ ...++.|.++.
T Consensus 200 T~s~~~~P~~~~~~l~~g~hi~ 221 (313)
T PF02423_consen 200 TPSTTPAPVFDAEWLKPGTHIN 221 (313)
T ss_dssp ---SSEEESB-GGGS-TT-EEE
T ss_pred cCCCCCCccccHHHcCCCcEEE
Confidence 6433200111 13456777765
No 402
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.14 E-value=4.7 Score=41.88 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=68.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC--HHHHHhccccCCCccEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKARAVVI 111 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~~DVvI 111 (303)
..+|.|+|+ |++|+.+++.+. ..+.+++ ++|.+. +....+ .+.|.++ +.| -.+.+++ ..-.++|++|
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~----~~~g~~v~~GDat~~~~L~~-agi~~A~~vv 469 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLM----RKYGYKVYYGDATQLELLRA-AGAEKAEAIV 469 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHH----HhCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence 468999998 999999999877 4567766 466542 122222 1344444 222 2223321 1124688877
Q ss_pred EcCC-chhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057 112 DFTD-ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (303)
Q Consensus 112 DfT~-p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll 172 (303)
-.+. ++.....+..+.+... +++. ..-++++.++|.++ |+..++-.+|--+..+-
T Consensus 470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia--Ra~~~~~~~~L~~~----Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 470 ITCNEPEDTMKIVELCQQHFPHLHILA--RARGRVEAHELLQA----GVTQFSRETFSSALELG 527 (601)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHhC----CCCEEEccHHHHHHHHH
Confidence 6553 4444555566666543 3433 34555665666543 45567666665555443
No 403
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.14 E-value=0.68 Score=45.61 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKAR 59 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~ 59 (303)
++||+|+|++|++|..++-.+....
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 5999999998999999999887543
No 404
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.13 E-value=1.4 Score=42.08 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=41.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.+|+|+|. |+||+.+++.+. .-++++.+ +|+.. +... +. . .+.-..++++++. ++|+|+...
T Consensus 137 ~tvgIvG~-G~IG~~vA~~l~-afG~~V~~-~~~~~--~~~~---~~-~--~~~~~~~l~e~l~------~aDvvv~~l 198 (312)
T PRK15469 137 FTIGILGA-GVLGSKVAQSLQ-TWGFPLRC-WSRSR--KSWP---GV-Q--SFAGREELSAFLS------QTRVLINLL 198 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCC--CCCC---Cc-e--eecccccHHHHHh------cCCEEEECC
Confidence 68999997 999999999887 46888875 56532 1100 00 0 0111357899984 799998654
No 405
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=90.09 E-value=1.8 Score=39.73 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.2
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence 689999999999999999875 46777653
No 406
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.07 E-value=1 Score=42.82 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=42.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|||+|. |++|+.+++.+. .=++++.+ +|+.. ... ..+++ +.+++++++ .+|+|+-..
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~-~fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~ 204 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQ-AFGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA 204 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHh-hcCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence 368999997 999999999876 45888875 56531 110 11222 458999994 789988654
No 407
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.05 E-value=3 Score=39.52 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=40.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hh--cCCC--CCCeeecCCHHHHHhccccCCCcc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VC--DMEQ--PLEIPVMSDLTMVLGSISQSKARA 108 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~---~~--g~~~--~~gv~v~~dl~~~l~~~~~~~~~D 108 (303)
+||+|+|+ |.||..++..++...-.+ +-.+|.... ...+. +. +... ...+..+.|++++ .++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi~~~-l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~-------~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDVVEG-IPQGKALDMYEASPVGGFDTKVTGTNNYADT-------ANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeCCCC-hhHHHHHhhhhhhhccCCCcEEEecCCHHHh-------CCCC
Confidence 58999998 999999999887543236 556775321 11111 10 0001 1124446788774 4789
Q ss_pred EEEEcC
Q 022057 109 VVIDFT 114 (303)
Q Consensus 109 VvIDfT 114 (303)
+||-+.
T Consensus 72 iVIita 77 (305)
T TIGR01763 72 IVVITA 77 (305)
T ss_pred EEEEcC
Confidence 888654
No 408
>PRK06153 hypothetical protein; Provisional
Probab=90.01 E-value=1.8 Score=42.65 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=25.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
.||+|+|| |+.|..++..+....=-+|+ ++|.
T Consensus 177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~ 208 (393)
T PRK06153 177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDG 208 (393)
T ss_pred CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECC
Confidence 58999999 99999999999876434444 5663
No 409
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.00 E-value=0.47 Score=42.37 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=53.7
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID 112 (303)
|+..+.|.|++|.+|+.+++.+.+ .+.+++.+ ++... ...... .+.+.. ...+++ +-.|
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~-~g~~vi~~-~r~~~-~~~~~~---------------~~~~~~--~~~~~~~~~~D 60 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAA-AGFDLAIN-DRPDD-EELAAT---------------QQELRA--LGVEVIFFPAD 60 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-ecCch-hHHHHH---------------HHHHHh--cCCceEEEEec
Confidence 345689999999999999999885 47888764 43210 000000 011110 001233 3468
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
++.++...+.+..+.+. ++.+|+-..|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 61 VADLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 99988888877776554 57888877764
No 410
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.97 E-value=3.9 Score=36.19 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=51.7
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEEc
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF 113 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDf 113 (303)
.+.|.|++|.+|+.+++.+.+ .+.+++...++.. ....+. ++++-. ...++ ..|.
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~--~~~~~~--------------~~~~~~-----~~~~~~~~~~D~ 62 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNS--PRRVKW--------------LEDQKA-----LGFDFIASEGNV 62 (246)
T ss_pred EEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCCh--HHHHHH--------------HHHHHh-----cCCcEEEEEcCC
Confidence 579999999999999999985 5788776554321 000000 111111 12233 3678
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++...+.+..+.+. ++++|+=+.|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 91 (246)
T PRK12938 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGI 91 (246)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 8888877777666554 67888887775
No 411
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.96 E-value=7.1 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.6
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
||.|+|+ |+.|...++.+. ..+.++. +.|..
T Consensus 2 ~v~viG~-G~sG~s~a~~l~-~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLK-AQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCC
Confidence 7999998 999999888666 5688765 47753
No 412
>PRK08267 short chain dehydrogenase; Provisional
Probab=89.91 E-value=1.6 Score=39.29 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=52.9
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
|.++.|.|++|.+|+.+++.+.+ .+.+++. ++++. ....++. +.+.. ...+ +.+|+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~----~~~~~~~~D~ 57 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAA-EGWRVGA-YDINE--AGLAALA---------------AELGA----GNAWTGALDV 57 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCH--HHHHHHH---------------HHhcC----CceEEEEecC
Confidence 35699999999999999998885 5777665 44431 1111111 11100 1232 35788
Q ss_pred CCchhHHHHHHHHHHc---CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF---GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~---g~~vVigTTG~ 140 (303)
+.++.+.+.+..+.+. ++++|+-..|.
T Consensus 58 ~~~~~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 58 TDRAAWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 9888888877766553 67888877664
No 413
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.90 E-value=0.69 Score=44.01 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.9
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
||+|+|+ |.+|..++-.+...+-+.=+..+|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 7999998 9999999998876554443446775
No 414
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=89.85 E-value=0.94 Score=43.82 Aligned_cols=129 Identities=14% Similarity=0.185 Sum_probs=76.0
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCC-c----EEEEEEec--CCCC--cch-----------hhhhcCCCCCCeeecC
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARG-M----EVAGAIDS--HSVG--EDI-----------GMVCDMEQPLEIPVMS 92 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~-~----eLvg~vd~--~~~g--~d~-----------~~~~g~~~~~gv~v~~ 92 (303)
.+++||+|+|. |+=|+.+++.+.++-. + .-|..+.. ...| +.+ ..+-|..-+..+...+
T Consensus 19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 44799999996 9999999998875321 1 12222221 1112 111 2222332344577788
Q ss_pred CHHHHHhccccCCCccEEEEcCCchhH----HHHHHHHHHcCCCeEEeCCCCCHH-------HHHHHHHHhhhcCCeEEE
Q 022057 93 DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLE-------TVSALSAFCDKASMGCLI 161 (303)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDfT~p~a~----~~~~~~al~~g~~vVigTTG~~~e-------~~~~L~~~a~~~~i~vv~ 161 (303)
|+.++. .++|++| |..|... .+-+.-.++-+.+.|+-+-|+... -..++..-+-.-.+.++.
T Consensus 98 dl~ea~------~dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~ 170 (372)
T KOG2711|consen 98 DLVEAA------KDADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLM 170 (372)
T ss_pred hHHHHh------ccCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeec
Confidence 999987 4899998 5555433 445566677888888777787532 122333333333355677
Q ss_pred cCCCcHHH
Q 022057 162 APTLSIGS 169 (303)
Q Consensus 162 a~N~SiGv 169 (303)
.||++--+
T Consensus 171 GaNiA~EV 178 (372)
T KOG2711|consen 171 GANIASEV 178 (372)
T ss_pred CCchHHHH
Confidence 77776655
No 415
>PRK07454 short chain dehydrogenase; Provisional
Probab=89.81 E-value=5.1 Score=35.36 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=53.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
|.++.|.|++|.+|+.+++.+.+ .+.+++. ++++. .+..++ .+.+.. ...+++ +..|.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~ 64 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK-AGWDLAL-VARSQ--DALEAL---------------AAELRS--TGVKAAAYSIDL 64 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh--CCCcEEEEEccC
Confidence 56899999999999999999875 5777655 45431 111111 111110 001233 35688
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++.....+..+.+. ++++|+-..|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 65 SNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 8888887777766553 58888877764
No 416
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.78 E-value=2.3 Score=44.03 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
-.|.|.|++|++|+.+++.+.+ .++++++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence 4699999999999999999875 5888887543
No 417
>PRK08017 oxidoreductase; Provisional
Probab=89.74 E-value=5.3 Score=35.51 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
+.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~-~g~~v~~~ 32 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKR-RGYRVLAA 32 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence 34799999999999999999875 47787654
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.68 E-value=1.2 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=27.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
.+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 5899999999999999999885 5788877653
No 419
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.67 E-value=4.4 Score=36.65 Aligned_cols=130 Identities=12% Similarity=0.181 Sum_probs=73.7
Q ss_pred ccccceEEEeecCCCCCceeE---------EEEcCCcHHH-----HHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC
Q 022057 18 NVKAKRFISCSTNPPQSNIKV---------IINGAVKEIG-----RAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME 83 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ikV---------~V~G~~GrMG-----~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~ 83 (303)
-+|-+.|++|-.-|...|-+- ++-| |..| -.=++++.+.-++-+.|++-++..
T Consensus 12 ~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~g--GAvgiR~~gv~dIkai~~~v~vPIIGIiKrd~~----------- 78 (229)
T COG3010 12 QLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQG--GAVGIRIEGVEDIKAIRAVVDVPIIGIIKRDYP----------- 78 (229)
T ss_pred HhcCCeEEEeecCCCCCCcchhHHHHHHHHHHhC--CcceEeecchhhHHHHHhhCCCCeEEEEecCCC-----------
Confidence 356789999986555433221 2221 2222 223445666677888888865431
Q ss_pred CCCCeeec---CCHHHHHhccccCCCccE-EEEcC---Cch-h--------------------HHHHHHHHHHcCCCeEE
Q 022057 84 QPLEIPVM---SDLTMVLGSISQSKARAV-VIDFT---DAS-T--------------------VYDNVKQATAFGMRSVV 135 (303)
Q Consensus 84 ~~~gv~v~---~dl~~~l~~~~~~~~~DV-vIDfT---~p~-a--------------------~~~~~~~al~~g~~vVi 135 (303)
...+.++ .+.+++.+ ..+|| .+|.| .|+ . ..+-...|.+.|..+|
T Consensus 79 -~s~v~ITptlkeVd~L~~-----~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I- 151 (229)
T COG3010 79 -DSPVRITPTLKEVDALAE-----AGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII- 151 (229)
T ss_pred -CCCceecccHHHHHHHHH-----CCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE-
Confidence 2223333 34555554 46664 56766 344 1 2334566788899966
Q ss_pred eCC--CCCH-------HHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057 136 YVP--HIQL-------ETVSALSAFCDKASMGCLIAPTLSIG 168 (303)
Q Consensus 136 gTT--G~~~-------e~~~~L~~~a~~~~i~vv~a~N~SiG 168 (303)
||| |++. .+++.++++++ .+.+++-=.+|.--
T Consensus 152 GTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP 192 (229)
T COG3010 152 GTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTP 192 (229)
T ss_pred ecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCH
Confidence 888 7654 35666777766 66777765665543
No 420
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=89.61 E-value=0.82 Score=43.33 Aligned_cols=88 Identities=7% Similarity=0.044 Sum_probs=58.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
-+++|+|+ |..|+.+++++..-..++=+-+++++. ..+..++.. ...++ +.+.+|.++++ .++|||+-
T Consensus 118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav------~~aDIV~t 188 (301)
T PRK06407 118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAAL------RDADTITS 188 (301)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHH------hcCCEEEE
Confidence 68999997 999999999999888888888888653 222222210 01223 55578999998 48999996
Q ss_pred cCCchhHHHHH-HHHHHcCCCeE
Q 022057 113 FTDASTVYDNV-KQATAFGMRSV 134 (303)
Q Consensus 113 fT~p~a~~~~~-~~al~~g~~vV 134 (303)
.|+... +.+ ...++.|.++.
T Consensus 189 aT~s~~--P~~~~~~l~pg~hV~ 209 (301)
T PRK06407 189 ITNSDT--PIFNRKYLGDEYHVN 209 (301)
T ss_pred ecCCCC--cEecHHHcCCCceEE
Confidence 663211 222 23456787766
No 421
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.53 E-value=4.6 Score=31.73 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=54.0
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEEEEc
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvIDf 113 (303)
|.|+|+ |++|+.+++.+.+ .+.+++. +|.+. .....+. +.++++ + .+.+.+.+. .-.++|.+|-.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLERA--GIEKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHHT--TGGCESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhhc--CccccCEEEEc
Confidence 679998 9999999999987 5556664 55431 1112221 122322 2 222222211 11467877766
Q ss_pred CCchhH-HHHHHHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057 114 TDASTV-YDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (303)
Q Consensus 114 T~p~a~-~~~~~~al~-~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~ 163 (303)
|.-+.. ...+..+.+ ++..-++. .-.+++..+.+ ++.|+-.++.|
T Consensus 70 ~~~d~~n~~~~~~~r~~~~~~~ii~-~~~~~~~~~~l----~~~g~d~vi~P 116 (116)
T PF02254_consen 70 TDDDEENLLIALLARELNPDIRIIA-RVNDPENAELL----RQAGADHVISP 116 (116)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSEEEE-EESSHHHHHHH----HHTT-SEEEEH
T ss_pred cCCHHHHHHHHHHHHHHCCCCeEEE-EECCHHHHHHH----HHCCcCEEECc
Confidence 644433 444455554 33223332 23444443344 33455556554
No 422
>PLN02928 oxidoreductase family protein
Probab=89.53 E-value=0.95 Score=43.78 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=42.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~--------~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (303)
.+|+|+|+ |+||+.+++.+. .=|+++++ +|+... .+.... .......+ -+.++++++. .+
T Consensus 160 ktvGIiG~-G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~------~a 227 (347)
T PLN02928 160 KTVFILGY-GAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG------EA 227 (347)
T ss_pred CEEEEECC-CHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhccccccccccccccC--cccCHHHHHh------hC
Confidence 68999997 999999999877 46888876 565310 100000 00000011 3568999984 79
Q ss_pred cEEEEcC
Q 022057 108 AVVIDFT 114 (303)
Q Consensus 108 DVvIDfT 114 (303)
|+|+-..
T Consensus 228 DiVvl~l 234 (347)
T PLN02928 228 DIVVLCC 234 (347)
T ss_pred CEEEECC
Confidence 9998654
No 423
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.47 E-value=1.1 Score=42.74 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=51.8
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcCCc
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTDA 116 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT~p 116 (303)
.+|.|+|.++|+..++.+++ .|+.++ .+.++. ..+..++ .++++--. .+.. +++|||.+
T Consensus 52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt~--~KL~~v~-----------kEI~~~~~-----vev~~i~~Dft~~ 111 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRTQ--EKLEAVA-----------KEIEEKYK-----VEVRIIAIDFTKG 111 (312)
T ss_pred EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCCH--HHHHHHH-----------HHHHHHhC-----cEEEEEEEecCCC
Confidence 56789999999999999985 899955 455542 1111111 11111110 1122 58899999
Q ss_pred hhHHHHHHHHHH-cCCCeEEeCCCCC
Q 022057 117 STVYDNVKQATA-FGMRSVVYVPHIQ 141 (303)
Q Consensus 117 ~a~~~~~~~al~-~g~~vVigTTG~~ 141 (303)
+..++.++..+. -.+-++|=.-|.+
T Consensus 112 ~~~ye~i~~~l~~~~VgILVNNvG~~ 137 (312)
T KOG1014|consen 112 DEVYEKLLEKLAGLDVGILVNNVGMS 137 (312)
T ss_pred chhHHHHHHHhcCCceEEEEeccccc
Confidence 988777765544 4467777666643
No 424
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.37 E-value=3.6 Score=38.40 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=67.0
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p 116 (303)
+|.|+|+ |.+|...++.+. ..+.+.+.++|... .. -+.++ ... +.+ .++... ..+|++||++-.
T Consensus 147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~r-l~~a~---~~~--~i~-~~~~~~-----~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RR-RDGAT---GYE--VLD-PEKDPR-----RDYRAIYDASGD 210 (308)
T ss_pred cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HH-HHhhh---hcc--ccC-hhhccC-----CCCCEEEECCCC
Confidence 6899997 999999998665 45787666666432 11 11111 111 111 111111 468999999965
Q ss_pred h-hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022057 117 S-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF 181 (303)
Q Consensus 117 ~-a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~ 181 (303)
. .....++.....|+=+++|.++-.. ++....-+.+ ++.+..+.+++ -..+.++.+.+..
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~~~~~-~~~~~~~~~~--~~~i~~~~~~~--~~~~~~~~~l~~~ 271 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFYTEPV-NFDFVPAFMK--EARLRIAAEWQ--PGDLHAVRELIES 271 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeecCCCc-ccccchhhhc--ceEEEEecccc--hhHHHHHHHHHHc
Confidence 4 4455566666777777788653211 1111111222 25555444433 2346666666654
No 425
>PRK06953 short chain dehydrogenase; Provisional
Probab=89.28 E-value=2.1 Score=37.60 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=50.1
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
|.++.|.|++|.+|+.+++.+.+ .+.+++.+ +++. .+.. ++.. .... +..|+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~-~r~~--~~~~------------------~~~~-----~~~~~~~~D~ 53 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIAT-ARDA--AALA------------------ALQA-----LGAEALALDV 53 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHh-CCCEEEEE-ECCH--HHHH------------------HHHh-----ccceEEEecC
Confidence 35789999999999999999874 58887764 4431 1111 1110 1111 45678
Q ss_pred CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~g~~vVigTTG~ 140 (303)
+.++.....+......++++|+-+.|.
T Consensus 54 ~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 54 ADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 888777665544433467888877664
No 426
>PLN02306 hydroxypyruvate reductase
Probab=89.27 E-value=1.2 Score=43.72 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=42.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hhc--CC----CCCCeeecCCHHHHHhccccCCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCD--ME----QPLEIPVMSDLTMVLGSISQSKA 106 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~---~~g--~~----~~~gv~v~~dl~~~l~~~~~~~~ 106 (303)
.+|+|+|. |++|+.+++.+...=++++.+ +|+... .+... ..+ +. ...++..+.++++++. .
T Consensus 166 ktvGIiG~-G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------~ 236 (386)
T PLN02306 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------E 236 (386)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------h
Confidence 68999997 999999999875345888774 665321 00000 000 00 0011222468999994 7
Q ss_pred ccEEEEcC
Q 022057 107 RAVVIDFT 114 (303)
Q Consensus 107 ~DVvIDfT 114 (303)
+|+|+-..
T Consensus 237 sDiV~lh~ 244 (386)
T PLN02306 237 ADVISLHP 244 (386)
T ss_pred CCEEEEeC
Confidence 99988654
No 427
>PLN00198 anthocyanidin reductase; Provisional
Probab=89.25 E-value=1.4 Score=41.43 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
.|.+ +.+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 ~~~~-~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~ 40 (338)
T PLN00198 5 TPTG-KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTV 40 (338)
T ss_pred cCCC-CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 3555 57899999999999999999886 477887654
No 428
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.19 E-value=1.4 Score=42.21 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~ 70 (303)
+||+|+|+ |++|+.++-.+..+.-. ||+ .+|.+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~-LiDi~ 34 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELV-LIDIN 34 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEE-EEEcc
Confidence 58999999 99999999988544433 554 57753
No 429
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=89.13 E-value=1.2 Score=41.32 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG 77 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~ 77 (303)
++||+++|+.|-.|+.+++.+..+|-+|+.-+..++..|+...
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~ 61 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE 61 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc
Confidence 5999999999999999999999999999998776666565554
No 430
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.12 E-value=3.1 Score=44.07 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=28.2
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
+...||+|+|+ |.||+.|+..++...+++++- +|.
T Consensus 307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~ 341 (708)
T PRK11154 307 RPVNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI 341 (708)
T ss_pred CcccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence 43468999998 999999999877677888775 664
No 431
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=89.12 E-value=4.9 Score=33.44 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=23.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSH 70 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~ 70 (303)
-+..++|. |..|+.+++.+.+.+ +++++|.+|.+
T Consensus 78 ~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~ 113 (175)
T PF13727_consen 78 RNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDD 113 (175)
T ss_dssp EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-
T ss_pred cceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCc
Confidence 44467775 888999999997754 68999999865
No 432
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.09 E-value=3.3 Score=38.62 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=25.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
-+|.|.|++|.+|+..++.+. ..+.++++...
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeC
Confidence 369999988999999998655 56888776554
No 433
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.06 E-value=3.8 Score=39.40 Aligned_cols=146 Identities=15% Similarity=0.058 Sum_probs=74.2
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeee--cC---CHHHHHhccccCCCccEE
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPV--MS---DLTMVLGSISQSKARAVV 110 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v--~~---dl~~~l~~~~~~~~~DVv 110 (303)
+|+|+|+ |-||...+..+.. -+..-+-++|... .. -+++ ++ .+..+ .. +..+.+.+......+|++
T Consensus 171 ~V~V~Ga-GpIGLla~~~a~~-~Ga~~Viv~d~~~--~R-l~~A---~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 171 TVVVVGA-GPIGLLAIALAKL-LGASVVIVVDRSP--ER-LELA---KEAGGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred EEEEECC-CHHHHHHHHHHHH-cCCceEEEeCCCH--HH-HHHH---HHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 7999998 9999998776654 4444444557532 11 1122 11 22221 11 111111110011258999
Q ss_pred EEcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCC-CcHHHHHHHHHHHHhccCCCcEE-
Q 022057 111 IDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSILLQQAAISASFHYKNVE- 187 (303)
Q Consensus 111 IDfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N-~SiGv~ll~~~a~~~~~~~~die- 187 (303)
||+| ++.+....+..+...|.=+++|+++-..... ....+..+ ++.+.=+-+ ++- .-+.++.+.++.-..|.+
T Consensus 243 ie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~-~~~~~~~k-el~l~gs~~~~~~--~~~~~~~~ll~~g~i~~~~ 318 (350)
T COG1063 243 IEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPL-PAGLVVSK-ELTLRGSLRPSGR--EDFERALDLLASGKIDPEK 318 (350)
T ss_pred EECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCcc-CHHHHHhc-ccEEEeccCCCCc--ccHHHHHHHHHcCCCChhH
Confidence 9999 5555666667777777888889886542111 12222222 244433211 222 235555555554344544
Q ss_pred EEEccCCC
Q 022057 188 IVESRPNA 195 (303)
Q Consensus 188 IiE~Hh~K 195 (303)
++ .|.-+
T Consensus 319 li-t~~~~ 325 (350)
T COG1063 319 LI-THRLP 325 (350)
T ss_pred ce-Eeecc
Confidence 34 55544
No 434
>PRK07904 short chain dehydrogenase; Provisional
Probab=89.02 E-value=3.9 Score=37.00 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=52.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDf 113 (303)
..+|.|.|++|++|+.+++.+.+..+..++.. +++.. ....++. +++... ...++ -+-.|.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~-~r~~~-~~~~~~~--------------~~l~~~--~~~~v~~~~~D~ 69 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLA-ALPDD-PRRDAAV--------------AQMKAA--GASSVEVIDFDA 69 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE-eCCcc-hhHHHHH--------------HHHHhc--CCCceEEEEecC
Confidence 35799999999999999999887656787754 44320 1111111 111110 00012 134578
Q ss_pred CCchhHHHHHHHHHHc-CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF-GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~-g~~vVigTTG~ 140 (303)
+.++...+.++.+.+. ++++++-..|.
T Consensus 70 ~~~~~~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 70 LDTDSHPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred CChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 8888877777766653 57877655554
No 435
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.96 E-value=1.5 Score=42.71 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.0
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
.-||.|+|+ |++|+..++.+.. -+++ |-++|++
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~-lGa~-V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANG-LGAT-VTILDIN 199 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHH-CCCe-EEEEECC
Confidence 467999998 9999999998774 4677 4457764
No 436
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.90 E-value=3.7 Score=37.15 Aligned_cols=80 Identities=21% Similarity=0.128 Sum_probs=51.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+..++. ++++. ....++ .+.+ ..+. +..|++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~-~~r~~--~~~~~~---------------~~~~------~~~~~~~~D~~ 60 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA-LGARVAI-GDLDE--ALAKET---------------AAEL------GLVVGGPLDVT 60 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHh------ccceEEEccCC
Confidence 5799999999999999998885 5777654 34321 111110 0111 1122 346899
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++...+.+..+.+. ++++++-..|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 88 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGV 88 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 999888777766653 67888877653
No 437
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.87 E-value=2.5 Score=44.06 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=65.4
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv 110 (303)
.-+|.|+|+ |++|+.+++.+.+ .+.+++. +|.+. +....+. +.|.++ + ++.+ ++.+ ..-.++|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vvv-ID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLS-SGVKMTV-LDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL 468 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHh-CCCCEEE-EECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence 358999998 9999999998774 5666664 57542 1122221 234444 2 2333 3321 012468887
Q ss_pred EEcC-CchhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057 111 IDFT-DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (303)
Q Consensus 111 IDfT-~p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv 169 (303)
|-.+ .++.....+..+.++.. +++. -..++++..+|+++ |+-.++-..+.-+.
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~----Gad~v~~e~~e~sl 524 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA----GVEKPERETFEGAL 524 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC----CCCEEehhhHhHHH
Confidence 7665 44555666666666643 4443 23445555666554 34445444444333
No 438
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=88.84 E-value=2.5 Score=39.95 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.1
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
+|.|.|++|-+|+.+++.+.+ .+.++++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLE-KGYEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence 799999999999999999885 588888754
No 439
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.81 E-value=1.1 Score=44.29 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=42.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
-.+|||+|. |++|+.+++.+. .=|+++++ +|+.. .. ...++....++++++. .+|+|+-..
T Consensus 151 gktvGIiG~-G~IG~~vA~~~~-~fGm~V~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDiVslh~ 211 (409)
T PRK11790 151 GKTLGIVGY-GHIGTQLSVLAE-SLGMRVYF-YDIED--KL--------PLGNARQVGSLEELLA------QSDVVSLHV 211 (409)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HCCCEEEE-ECCCc--cc--------ccCCceecCCHHHHHh------hCCEEEEcC
Confidence 368999997 999999999877 45898876 56531 00 0112333458999994 789888654
No 440
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.65 E-value=7.1 Score=35.15 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=49.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. .... . . .+.. +..|.+
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~-~r~~--~~~~------------------~-~------~~~~~~~~D~~ 55 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR-AGYRVFGT-SRNP--ARAA------------------P-I------PGVELLELDVT 55 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--hhcc------------------c-c------CCCeeEEeecC
Confidence 4699999999999999999885 58887654 3321 0000 0 0 1121 345788
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++...+.+..+.+. .+++|+-..|.
T Consensus 56 d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 56 DDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 888777776665442 46788777664
No 441
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.54 E-value=3.2 Score=35.52 Aligned_cols=82 Identities=17% Similarity=0.071 Sum_probs=47.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
.||.|+|+ |++|...++.+.+ .+.+++ +++++. .++..++. .+.. ...+++.- ..++|+||-.|
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~d-----l~~a~lViaaT 78 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDD-----IKDAHLIYAAT 78 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhc-----CCCceEEEECC
Confidence 58999998 9999999998874 566666 345432 22222211 1111 12222221 14689888888
Q ss_pred CchhHHHHHHHHHHcCCC
Q 022057 115 DASTVYDNVKQATAFGMR 132 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~ 132 (303)
.-+.....+..+++.+.+
T Consensus 79 ~d~e~N~~i~~~a~~~~~ 96 (157)
T PRK06719 79 NQHAVNMMVKQAAHDFQW 96 (157)
T ss_pred CCHHHHHHHHHHHHHCCc
Confidence 766666655555555543
No 442
>PLN02650 dihydroflavonol-4-reductase
Probab=88.52 E-value=1.6 Score=41.30 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=27.2
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~ 36 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATV 36 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEE
Confidence 35899999999999999999885 578888754
No 443
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.45 E-value=0.97 Score=45.13 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=24.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
.||.|+|+ |..|...++.+. ..+.+++ ++|.
T Consensus 17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~ 47 (480)
T PRK01438 17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDD 47 (480)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeC
Confidence 58999998 999999998776 5678865 4664
No 444
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.43 E-value=1.4 Score=41.73 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.7
Q ss_pred eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
||.|+|+ |..|..+++.+.. .|+.=+-++|.
T Consensus 1 kVlVVGa-GGlG~eilknLal-~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLAL-SGFRNIHVIDM 31 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence 6899998 9999999999874 67766667773
No 445
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.41 E-value=1.8 Score=40.38 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=28.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
.+|.|.|++|.+|+.+++.+.+ .+.++++.++.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence 5899999999999999998885 57888877654
No 446
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=88.40 E-value=2.2 Score=39.84 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF-RGYTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 46899999999999999998885 578877643
No 447
>PRK12743 oxidoreductase; Provisional
Probab=88.39 E-value=4.4 Score=36.38 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=53.7
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vID 112 (303)
|+-+|.|.|++|.+|+.+++.+.+ .+.+++....++. .....+. +++-.. ...++. -+|
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D 60 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDE--EGAKETA--------------EEVRSH---GVRAEIRQLD 60 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHHH--------------HHHHhc---CCceEEEEcc
Confidence 345799999999999999999885 5888876554331 1111110 111100 012332 468
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
++.++.....+..+.+. .+++|+-..|.
T Consensus 61 l~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 61 LSDLPEGAQALDKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 89988887777666543 46788877764
No 448
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=88.34 E-value=1.9 Score=42.25 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=48.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|||+|+|. |.-++.+++++.+. +..+..++++...|. .... ...-+.+ +.|.+.+++ +++..++|+++-.+
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQS-PLVKYVYVAPGNAGT--ARLA---KNKNVAISITDIEALVE-FAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhC-CCccEEEEECCCHHH--hhhc---ccccccCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 69999997 88899999998865 333333334322111 1000 0011111 345555432 12235788887544
Q ss_pred CchhHHHHHHHHHHcCCCeE
Q 022057 115 DASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vV 134 (303)
.-.........+.++|++++
T Consensus 73 e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 73 EAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred chHHHHHHHHHHHHCCCeEE
Confidence 32222345556667788765
No 449
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=88.32 E-value=9.1 Score=38.78 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=37.1
Q ss_pred cccccceEEEee--cCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 17 QNVKAKRFISCS--TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 17 ~~~~~~~~~~~~--~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
++.+-|+|++-+ |.+..-++|..=+-.||+||.++++++. ..|.+++-+.-
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~-~~GA~VtlI~G 304 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAA-AAGAEVTLISG 304 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHH-HCCCcEEEEeC
Confidence 457777766544 3333336899999999999999999887 46777766553
No 450
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.26 E-value=1.9 Score=40.97 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvI 111 (303)
-+|.|.|+ |.+|...++.+. ..+.+++++ ++.....+..+++ .++|+... .++++ ... ...+|++|
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~-~~~~~~~~~~~~~---~~~Ga~~v~~~~~~~~~-~~~---~~~~d~vi 243 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVL-NRRDPPDPKADIV---EELGATYVNSSKTPVAE-VKL---VGEFDLII 243 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCeEEEE-ecCCCCHHHHHHH---HHcCCEEecCCccchhh-hhh---cCCCCEEE
Confidence 47999997 999999998655 457776664 3311001111122 12333221 12222 110 13589999
Q ss_pred EcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057 112 DFTDA-STVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 112 DfT~p-~a~~~~~~~al~~g~~vVigTT 138 (303)
|++.. ....+.+......|.=+.+|.+
T Consensus 244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 244 EATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 98854 4445555555555665567765
No 451
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.12 E-value=2.8 Score=41.56 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=26.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
+..|.|+|++|+.||.+++.+.+ .++.+-+++.
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VR 111 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLK-RGFSVRALVR 111 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHH-CCCeeeeecc
Confidence 58999999999999999998885 4566655553
No 452
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.01 E-value=3.3 Score=39.15 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=48.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---c--CCHHHHHhccccCCCccEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SDLTMVLGSISQSKARAVV 110 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~--~dl~~~l~~~~~~~~~DVv 110 (303)
-+|.|+|+ |.+|...++.+. ..+.+-+-+++.+. .. .+++ .++|+.. + .++++.... ...+|++
T Consensus 171 ~~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~--~~-~~~a---~~lGa~~vi~~~~~~~~~~~~~---~g~~D~v 239 (343)
T PRK09880 171 KRVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSP--RS-LSLA---REMGADKLVNPQNDDLDHYKAE---KGYFDVS 239 (343)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCH--HH-HHHH---HHcCCcEEecCCcccHHHHhcc---CCCCCEE
Confidence 37999997 999999998665 45764333344321 11 1122 1233211 1 134444321 1247999
Q ss_pred EEcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057 111 IDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 111 IDfT~p-~a~~~~~~~al~~g~~vVigTT 138 (303)
+|++-. +.....+......|+=+.+|.+
T Consensus 240 id~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 240 FEVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 998864 3444444444445555556654
No 453
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.00 E-value=1.6 Score=41.04 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=51.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eec---CCHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV 109 (303)
-+|.|.|++|.+|+..++.+. ..+.++++...+.. ....+.. .+|+ -.+ .++.+.+.... ...+|+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~---~~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-~~gvd~ 224 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDE---KVDLLKN---KLGFDDAFNYKEEPDLDAALKRYF-PNGIDI 224 (338)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHHH---hcCCceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence 369999999999999998655 57888776554321 1111110 0221 111 13333332111 135788
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
++|++......+.+......|.=+.+|..
T Consensus 225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence 88887655444444444455555555543
No 454
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.97 E-value=4.1 Score=38.70 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=55.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (303)
|||.|+|+ |.||..++-.+.+.. ..+.....++. .|-.+....+ ........+.+.+.+ ..+|+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~-------~~~Dl 70 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEAL-------GPADL 70 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCC-ccccccccccChhhc-------CCCCE
Confidence 69999998 999999999888665 44443332210 1211111111 000111112222222 47899
Q ss_pred EEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhc
Q 022057 110 VIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~ 155 (303)
+|-++-.-.+.+.+... +.....|++==-|+.-.+ .+.+...+.
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~ 117 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKE 117 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcc
Confidence 99887544444444333 333333443333775443 666666553
No 455
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.96 E-value=2 Score=42.82 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=48.9
Q ss_pred ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEEE
Q 022057 35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvID 112 (303)
+.||.|+|. |+.|.. +++.+. ..+.++.+ .|.... ....++ .+.|+.++. ...+.+ .++|+||-
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~-~~G~~V~~-~D~~~~-~~~~~l----~~~gi~~~~~~~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLL-NLGYKVSG-SDLKES-AVTQRL----LELGAIIFIGHDAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHH-hCCCeEEE-ECCCCC-hHHHHH----HHCCCEEeCCCCHHHC------CCCCEEEE
Confidence 358999998 999999 688666 57888764 664321 122222 234665542 223334 36898875
Q ss_pred cCCchhHHHHHHHHHHcCCCeE
Q 022057 113 FTDASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vV 134 (303)
...-....+.++.|.++|+|++
T Consensus 73 spgi~~~~~~~~~a~~~~i~i~ 94 (461)
T PRK00421 73 SSAIPDDNPELVAARELGIPVV 94 (461)
T ss_pred CCCCCCCCHHHHHHHHCCCcEE
Confidence 4321122334455555565554
No 456
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=87.93 E-value=4.8 Score=35.94 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=53.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHH-HHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT-MVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~-~~l~~~~~~~~~DVvIDf 113 (303)
-||.|+|+ |++|..-++.+.+ .+..++ +++++. ..+..++.. ...+.. ..+++ +.+ ..+|.||-.
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~-~ga~Vt-Vvsp~~-~~~l~~l~~---~~~i~~~~~~~~~~dl------~~~~lVi~a 76 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLK-AGAQLR-VIAEEL-ESELTLLAE---QGGITWLARCFDADIL------EGAFLVIAA 76 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHH-CCCEEE-EEcCCC-CHHHHHHHH---cCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence 48999998 9999998888875 566655 555532 233333331 223332 11221 233 478888877
Q ss_pred CCc-hhHHHHHHHHHHcCCCeE
Q 022057 114 TDA-STVYDNVKQATAFGMRSV 134 (303)
Q Consensus 114 T~p-~a~~~~~~~al~~g~~vV 134 (303)
|.- +.-......|.+.|+++-
T Consensus 77 t~d~~ln~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPVN 98 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEEE
Confidence 744 345667778888898874
No 457
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.86 E-value=1.7 Score=42.74 Aligned_cols=133 Identities=15% Similarity=0.132 Sum_probs=70.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.||.|+|. |++|..+++.+. +.+.++++ +|.+........... . ....+.+... .++|++|-...
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~-~~G~~V~g-~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLA-QKGVYVIG-VDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG 68 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHH-HCCCEEEE-EeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence 48999998 999999998877 46677554 775321000000000 0 0011222333 35788875553
Q ss_pred chhHHHHHHHHHHcCCCeEEe-----------------CCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057 116 ASTVYDNVKQATAFGMRSVVY-----------------VPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (303)
Q Consensus 116 p~a~~~~~~~al~~g~~vVig-----------------TTG~~~--e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a 176 (303)
.....+.+..|.+.|+++|.. -||-+- --..-|..+-++.+.+.....| +|+.++...
T Consensus 69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~~- 145 (418)
T PRK00683 69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDGM- 145 (418)
T ss_pred CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHHh-
Confidence 334466666777766665532 233210 0112234444455556677777 666554422
Q ss_pred HHhccCCCcEEEEEc
Q 022057 177 ISASFHYKNVEIVES 191 (303)
Q Consensus 177 ~~~~~~~~dieIiE~ 191 (303)
.. .|+-++|.
T Consensus 146 ---~~--~~~~V~E~ 155 (418)
T PRK00683 146 ---QQ--PGVRVVEI 155 (418)
T ss_pred ---hc--CCEEEEEe
Confidence 21 46678886
No 458
>PRK06199 ornithine cyclodeaminase; Validated
Probab=87.84 E-value=1.1 Score=43.93 Aligned_cols=91 Identities=13% Similarity=0.218 Sum_probs=58.8
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CCCCC----CeeecCCHHHHHhccccCCCcc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARA 108 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~D 108 (303)
.-+++|+|+ |.+++.+++++.. .|+++=+-+++++. ..+..++. +.+.+ .+.+.+|.++++ .++|
T Consensus 155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav------~~AD 225 (379)
T PRK06199 155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVV------RGSD 225 (379)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHH------cCCC
Confidence 357999997 9999999999887 45688888888753 12222211 00122 266688999998 4799
Q ss_pred EEEEcCCchh----HHHHH-HHHHHcCCCeE
Q 022057 109 VVIDFTDAST----VYDNV-KQATAFGMRSV 134 (303)
Q Consensus 109 VvIDfT~p~a----~~~~~-~~al~~g~~vV 134 (303)
||+-+|+... ..+.+ ...++-|.++.
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVKREWVKPGAFLL 256 (379)
T ss_pred EEEEccCCCCCCCCcCcEecHHHcCCCcEEe
Confidence 9987664211 11222 23457888776
No 459
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.72 E-value=3.6 Score=36.16 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=49.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++. ....++ .+.+.. ...++ +..|.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~-~g~~V~~~-~r~~--~~~~~~---------------~~~l~~---~~~~~~~~~D~~ 64 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLA-EGYKVAIT-ARDQ--KELEEA---------------AAELNN---KGNVLGLAADVR 64 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHH-CCCEEEEe-eCCH--HHHHHH---------------HHHHhc---cCcEEEEEccCC
Confidence 5799999999999999999985 58886654 4431 111111 111110 01233 234777
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG 139 (303)
.++.+.+.+..+.+. ++++|+=..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 65 DEADVQRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777777766655443 5777776554
No 460
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.68 E-value=6.2 Score=34.78 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=53.1
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+.+++.. +++. ....+.. +++... ..+++ +..|++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl~ 66 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAE-AGATVAFN-DGLA--AEARELA--------------AALEAA---GGRAHAIAADLA 66 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-cCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence 6799999999999999998874 57887764 4331 1111110 111110 01233 345889
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++.....+..+.+. ++.+|+-..|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 67 DPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 888887777766553 67888877764
No 461
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=87.55 E-value=3.8 Score=40.70 Aligned_cols=117 Identities=12% Similarity=0.028 Sum_probs=58.4
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID 112 (303)
++|||.|+|. |.==.+++..+.+.+...-+... +...|.. ... ....+++ ..|.+++++ .++..++|.||-
T Consensus 3 ~~~kvLviG~-g~rehal~~~~~~~~~~~~~~~~-pgn~g~~--~~~---~~~~~~~~~~d~~~l~~-~a~~~~iD~Vv~ 74 (426)
T PRK13789 3 VKLKVLLIGS-GGRESAIAFALRKSNLLSELKVF-PGNGGFP--DDE---LLPADSFSILDKSSVQS-FLKSNPFDLIVV 74 (426)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-CCchHHh--ccc---cccccCcCcCCHHHHHH-HHHHcCCCEEEE
Confidence 4589999997 76667788888877755433322 2111110 000 0111122 356665543 123357898873
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCH---HHHHHHHHHhhhcCCeE
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGC 159 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~---e~~~~L~~~a~~~~i~v 159 (303)
...-......+..+.+.|+|++ |.+-... ......+++.++.|+|.
T Consensus 75 g~E~~l~~glad~~~~~Gip~~-Gp~~~aa~le~dK~~~K~~l~~~gIpt 123 (426)
T PRK13789 75 GPEDPLVAGFADWAAELGIPCF-GPDSYCAQVEGSKHFAKSLMKEAKIPT 123 (426)
T ss_pred CCchHHHHHHHHHHHHcCCCcC-CCHHHHHHHHcCHHHHHHHHHHcCCCC
Confidence 2222222345566778888865 4321100 01223455566666664
No 462
>PRK06483 dihydromonapterin reductase; Provisional
Probab=87.48 E-value=7.5 Score=34.24 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=50.3
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID 112 (303)
|+.++.|.|++|.+|+.+++.+.+ .+.+++.. +++. .+.. +++ .. .... +..|
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~-~r~~--~~~~-----------------~~~-~~----~~~~~~~~D 54 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLA-QGQPVIVS-YRTH--YPAI-----------------DGL-RQ----AGAQCIQAD 54 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHH-CCCeEEEE-eCCc--hhHH-----------------HHH-HH----cCCEEEEcC
Confidence 456899999999999999998874 57787764 4331 1100 111 10 1111 3457
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.+.++...+.+....+. ++++++-..|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 55 FSTNAGIMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred CCCHHHHHHHHHHHHhhCCCccEEEECCcc
Confidence 78888777777665542 37777766653
No 463
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.46 E-value=4.4 Score=38.65 Aligned_cols=81 Identities=27% Similarity=0.275 Sum_probs=51.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID 112 (303)
..|.|.|++|.+|+.+++.+.+ .+.+|+. ++++. ....++. +++-+ ...+ +..|
T Consensus 8 k~vlITGAs~GIG~aia~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D 64 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFAR-RGARLVL-AARDE--EALQAVA--------------EECRA-----LGAEVLVVPTD 64 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence 4799999999999999999885 5788774 44431 1111111 11111 1222 2458
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPH 139 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG 139 (303)
.+.++.+.+.+..+.+. ++++++-..|
T Consensus 65 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 65 VTDADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 88888888877776654 5788887765
No 464
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=87.45 E-value=2 Score=37.36 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=24.0
Q ss_pred ceeEEEEcCCcHH-HHHHHHHHHhcCCcEEEEEEec
Q 022057 35 NIKVIINGAVKEI-GRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 35 ~ikV~V~G~~GrM-G~~i~~~i~~~~~~eLvg~vd~ 69 (303)
..||.|+|+ |.| |+.+++.+.+ .+.++ -++++
T Consensus 44 gk~vlViG~-G~~~G~~~a~~L~~-~g~~V-~v~~r 76 (168)
T cd01080 44 GKKVVVVGR-SNIVGKPLAALLLN-RNATV-TVCHS 76 (168)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhh-CCCEE-EEEEC
Confidence 479999998 998 8889998875 56664 34554
No 465
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.41 E-value=2.2 Score=35.32 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=23.7
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd 68 (303)
|+|+|+ |.||..++-.+.+ .+.++.-+..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSR 29 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHH-TTCEEEEEES
T ss_pred CEEECc-CHHHHHHHHHHHH-CCCceEEEEc
Confidence 789998 9999999999876 7777665443
No 466
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=87.35 E-value=8.8 Score=38.69 Aligned_cols=106 Identities=10% Similarity=0.063 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCeeecCCHHHHHhccccCCCccEEEEc-CCchhHHHHHH
Q 022057 47 IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDF-TDASTVYDNVK 124 (303)
Q Consensus 47 MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf-T~p~a~~~~~~ 124 (303)
||+.++..+.+ .+++|+ ++|++. ....++... +...++....|++++.+++ ..+|+|+-. +.++++.+.+.
T Consensus 1 MG~~mA~nL~~-~G~~V~-v~nrt~--~~~~~l~~~~g~~~g~~~~~s~~e~v~~l---~~~~~Ii~mv~~g~~v~~Vi~ 73 (459)
T PRK09287 1 MGKNLALNIAS-HGYTVA-VYNRTP--EKTDEFLAEEGKGKKIVPAYTLEEFVASL---EKPRKILLMVKAGAPVDAVIE 73 (459)
T ss_pred CcHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhCCCCCeEeeCCHHHHHhhC---CCCCEEEEECCCchHHHHHHH
Confidence 88999998874 688875 678752 222333310 0112467788999988632 358887753 34445555543
Q ss_pred H---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057 125 Q---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (303)
Q Consensus 125 ~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv 160 (303)
. .++.|.=+|-++|.. .++..++.+.+++.|+..+
T Consensus 74 ~l~~~l~~GdiiID~gn~~-~~~t~~~~~~l~~~Gi~fv 111 (459)
T PRK09287 74 QLLPLLEKGDIIIDGGNSN-YKDTIRREKELAEKGIHFI 111 (459)
T ss_pred HHHhcCCCCCEEEECCCCC-HHHHHHHHHHHHhcCCeEE
Confidence 3 334454344444433 3344455565666676643
No 467
>PRK07074 short chain dehydrogenase; Provisional
Probab=87.35 E-value=5 Score=35.82 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=51.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
+.++.|.|++|.+|+.+++.+.+ .+.+++. ++++. ....++. +-+. ...+. +-.|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~-~g~~v~~-~~r~~--~~~~~~~---------------~~~~----~~~~~~~~~D~ 58 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLA-AGDRVLA-LDIDA--AALAAFA---------------DALG----DARFVPVACDL 58 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHhc----CCceEEEEecC
Confidence 34799999999999999999875 5788766 44431 1111111 1111 02333 24678
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++.....+..+.+. ++.+|+-..|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 59 TDAASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 8888776666655442 57888877764
No 468
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=87.30 E-value=8 Score=37.41 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCchh-HHHHHH
Q 022057 48 GRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNVK 124 (303)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a-~~~~~~ 124 (303)
|..++..+.+ .++++.. +|++.. ..+..+.. ...|+.+.+|..+++ .++|+||-+.++.. ..+.+.
T Consensus 32 G~~MA~~La~-aG~~V~v-~Dr~~~~l~~~~~~~l---~~~Gi~~asd~~eaa------~~ADvVIlaVP~~~~v~~Vl~ 100 (342)
T PRK12557 32 GSRMAIEFAE-AGHDVVL-AEPNRSILSEELWKKV---EDAGVKVVSDDAEAA------KHGEIHILFTPFGKKTVEIAK 100 (342)
T ss_pred HHHHHHHHHh-CCCeEEE-EECCHHHhhHHHHHHH---HHCCCEEeCCHHHHH------hCCCEEEEECCCcHHHHHHHH
Confidence 4556665553 4666654 565421 00011111 245677777888877 47999998877666 455544
Q ss_pred HH---HHcCCCeEEeCCCCCHHHH-HHHHHH
Q 022057 125 QA---TAFGMRSVVYVPHIQLETV-SALSAF 151 (303)
Q Consensus 125 ~a---l~~g~~vVigTTG~~~e~~-~~L~~~ 151 (303)
.. +..|.-++..+|+ +.... +.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~ 130 (342)
T PRK12557 101 NILPHLPENAVICNTCTV-SPVVLYYSLEGE 130 (342)
T ss_pred HHHhhCCCCCEEEEecCC-CHHHHHHHHHHH
Confidence 33 3345444443444 44443 445444
No 469
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.26 E-value=5.4 Score=35.68 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=51.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+.+++....+.. +. .+++.. .++ -+..|.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~~~~---~~-----------------~~~l~~-----~~~~~~~~Dl~ 61 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLR-EGAKVAVLYNSAE---NE-----------------AKELRE-----KGVFTIKCDVG 61 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcH---HH-----------------HHHHHh-----CCCeEEEecCC
Confidence 5799999999999999999885 5777765432211 10 011111 112 2456888
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++...+.+..+.+. ++++|+-..|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 62 NRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 888888877766654 57788766653
No 470
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=87.22 E-value=1.8 Score=40.90 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=23.3
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (303)
Q Consensus 38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (303)
|+|+|+ |.+|..++-.+....-..=+..+|..
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~ 32 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVN 32 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 589998 99999999888765433334467753
No 471
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.07 E-value=4.4 Score=39.10 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=59.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~ 115 (303)
.+|+|+|+ |.+|..-++... .=++++++ +|+.. .+-++++.. ..+|..|||+.
T Consensus 183 ~~vgI~Gl-GGLGh~aVq~AK-AMG~rV~v-is~~~--------------------~kkeea~~~----LGAd~fv~~~~ 235 (360)
T KOG0023|consen 183 KWVGIVGL-GGLGHMAVQYAK-AMGMRVTV-ISTSS--------------------KKKEEAIKS----LGADVFVDSTE 235 (360)
T ss_pred cEEEEecC-cccchHHHHHHH-HhCcEEEE-EeCCc--------------------hhHHHHHHh----cCcceeEEecC
Confidence 68999998 669999888655 45888886 44321 012455543 46788888884
Q ss_pred chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEE
Q 022057 116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~ 161 (303)
-....+.+..++.-+++-|+ -+++..++.+..+.+.+|.-+++
T Consensus 236 d~d~~~~~~~~~dg~~~~v~---~~a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 236 DPDIMKAIMKTTDGGIDTVS---NLAEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred CHHHHHHHHHhhcCcceeee---eccccchHHHHHHhhcCCEEEEE
Confidence 44445555666666666555 22333345566677776654443
No 472
>PRK06523 short chain dehydrogenase; Provisional
Probab=87.06 E-value=9.2 Score=34.16 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=25.8
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 10 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~ 39 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLE-AGARVVTT 39 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHH-CCCEEEEE
Confidence 6899999999999999999885 58887654
No 473
>PRK07589 ornithine cyclodeaminase; Validated
Probab=87.05 E-value=1.7 Score=42.08 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvIDf 113 (303)
-+++|+|+ |..++.+++++..-..++=+-+++++. ..+..++.... ...+.+.+|.++++. ++|||+-.
T Consensus 130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta 200 (346)
T PRK07589 130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDP--AATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV 200 (346)
T ss_pred cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence 57999997 999999999888777777777888653 12222221001 134556789999984 79999977
Q ss_pred CCchhHHHHH-HHHHHcCCCeE
Q 022057 114 TDASTVYDNV-KQATAFGMRSV 134 (303)
Q Consensus 114 T~p~a~~~~~-~~al~~g~~vV 134 (303)
|+.....+.+ ...++-|.++.
T Consensus 201 T~S~~~~Pvl~~~~lkpG~hV~ 222 (346)
T PRK07589 201 TADKTNATILTDDMVEPGMHIN 222 (346)
T ss_pred cCCCCCCceecHHHcCCCcEEE
Confidence 7422111222 24568888876
No 474
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=87.05 E-value=1.6 Score=42.69 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=89.5
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecC--CCCcchhhhhcCCC----CCC-eeecC-----CHHHHHh
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH--SVGEDIGMVCDMEQ----PLE-IPVMS-----DLTMVLG 99 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~--~~g~d~~~~~g~~~----~~g-v~v~~-----dl~~~l~ 99 (303)
..-+.|.||+|-.|+.+++.+... ++..+. +.-++ +..+-+ +.++... +.. +.+.+ +++++.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn~~KL~~vL-~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema- 81 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRNEKKLQEVL-EKVGEKTGTDLSSSVILIADSANEASLDEMA- 81 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCCHHHHHHHH-HHHhhccCCCcccceEEEecCCCHHHHHHHH-
Confidence 357899999999999999887752 344332 22222 111111 1111100 011 22222 366665
Q ss_pred ccccCCCccEEEEcCCchhH--HHHHHHHHHcCCCeE--EeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC-----cHHHH
Q 022057 100 SISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGSI 170 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT~p~a~--~~~~~~al~~g~~vV--igTTG~~~e~~~~L~~~a~~~~i~vv~a~N~-----SiGv~ 170 (303)
..+-|+|.+--|--+ ...++.|+++|.+-| .|-|-|-+--..+-.+.|+++|+.++=+.-| -+|++
T Consensus 82 -----k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~ 156 (423)
T KOG2733|consen 82 -----KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGVM 156 (423)
T ss_pred -----hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCccceee
Confidence 468899988877554 778899999999876 3333343333345567899999998877765 46665
Q ss_pred HHHHHHHHhccCCCcEEEEEc--c-CCCCCCCcHHHH
Q 022057 171 LLQQAAISASFHYKNVEIVES--R-PNARDFPSPDAT 204 (303)
Q Consensus 171 ll~~~a~~~~~~~~dieIiE~--H-h~K~DaPSGTA~ 204 (303)
.+.+ .+. -++.-+|. | |.| -|||+++
T Consensus 157 f~~k---~fd---g~ln~VEsfl~Lh~~--gp~G~sl 185 (423)
T KOG2733|consen 157 FLRK---NFD---GVLNHVESFLQLHSK--GPSGYSL 185 (423)
T ss_pred eehh---hcc---ccHHHHHHHHhhhcc--CCccccc
Confidence 4432 111 23334565 2 345 6999765
No 475
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.97 E-value=1.4 Score=41.21 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=42.0
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeecCC---HHHHHhccccCCCccEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSD---LTMVLGSISQSKARAVVI 111 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~d---l~~~l~~~~~~~~~DVvI 111 (303)
.++.|+|+ |.+||.++..+.+ .+++=+-+++++. ..+..++... ....+....+ +.+.+ .++|+||
T Consensus 126 k~vlvlGa-GGaarai~~aL~~-~G~~~i~I~nRt~--~ka~~La~~~~~~~~~~~~~~~~~~~~~~------~~~DiVI 195 (282)
T TIGR01809 126 FRGLVIGA-GGTSRAAVYALAS-LGVTDITVINRNP--DKLSRLVDLGVQVGVITRLEGDSGGLAIE------KAAEVLV 195 (282)
T ss_pred ceEEEEcC-cHHHHHHHHHHHH-cCCCeEEEEeCCH--HHHHHHHHHhhhcCcceeccchhhhhhcc------cCCCEEE
Confidence 58999998 9999999998874 5665566677642 2233333110 0111222222 22333 4689999
Q ss_pred EcCCc
Q 022057 112 DFTDA 116 (303)
Q Consensus 112 DfT~p 116 (303)
..|+.
T Consensus 196 naTp~ 200 (282)
T TIGR01809 196 STVPA 200 (282)
T ss_pred ECCCC
Confidence 88853
No 476
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.70 E-value=3.7 Score=36.41 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=48.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+.+++...++.. .....+ .+.+. .++. +..|++
T Consensus 6 k~ilItGas~gIG~~la~~l~~-~G~~vv~~~~~~~--~~~~~~---------------~~~~~-----~~~~~~~~D~~ 62 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAR-EGARVVVNYHQSE--DAAEAL---------------ADELG-----DRAIALQADVT 62 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHH-CCCeEEEEcCCCH--HHHHHH---------------HHHhC-----CceEEEEcCCC
Confidence 4799999999999999998874 5788775443321 111111 01110 1222 235788
Q ss_pred CchhHHHHHHHHHHc---CCCeEEeCCC
Q 022057 115 DASTVYDNVKQATAF---GMRSVVYVPH 139 (303)
Q Consensus 115 ~p~a~~~~~~~al~~---g~~vVigTTG 139 (303)
.++...+.+..+.+. ++++|+-..|
T Consensus 63 ~~~~~~~~~~~~~~~~g~~id~li~~ag 90 (253)
T PRK08642 63 DREQVQAMFATATEHFGKPITTVVNNAL 90 (253)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 888777766655433 2677776554
No 477
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=86.68 E-value=4.4 Score=38.99 Aligned_cols=127 Identities=18% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCc
Q 022057 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKAR 107 (303)
Q Consensus 30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~ 107 (303)
++.....||.+.|. |-.|+.++-.++ .=+.|+++ +|+-. .-.+-..+.. ++-+.- .+.+..+++. .+|
T Consensus 7 ~~~~~a~kvmLLGS-GELGKEvaIe~Q-RLG~eViA-VDrY~-~APAmqVAhr--s~Vi~MlD~~al~avv~r----ekP 76 (394)
T COG0027 7 PLRPQATKVMLLGS-GELGKEVAIEAQ-RLGVEVIA-VDRYA-NAPAMQVAHR--SYVIDMLDGDALRAVVER----EKP 76 (394)
T ss_pred CCCCCCeEEEEecC-CccchHHHHHHH-hcCCEEEE-ecCcC-CChhhhhhhh--eeeeeccCHHHHHHHHHh----hCC
Confidence 34444589999995 999999998766 56899987 56421 1122222211 111111 1234445543 689
Q ss_pred cEEEEcCCchhH-HHHHHHHHHcCCCeEEe------------------------CCCC-CHHHHHHHHHHhhhcCCeEEE
Q 022057 108 AVVIDFTDASTV-YDNVKQATAFGMRSVVY------------------------VPHI-QLETVSALSAFCDKASMGCLI 161 (303)
Q Consensus 108 DVvIDfT~p~a~-~~~~~~al~~g~~vVig------------------------TTG~-~~e~~~~L~~~a~~~~i~vv~ 161 (303)
|.+|-= -++. -+.+...-+.|..||=. |+.+ -.+.++++.+++++-|.|+++
T Consensus 77 d~IVpE--iEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvv 154 (394)
T COG0027 77 DYIVPE--IEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVV 154 (394)
T ss_pred Ceeeeh--hhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeec
Confidence 987711 1222 34445556677775521 1111 123456789999999999999
Q ss_pred cCCCcHH
Q 022057 162 APTLSIG 168 (303)
Q Consensus 162 a~N~SiG 168 (303)
.|=||-.
T Consensus 155 KPvMSSS 161 (394)
T COG0027 155 KPVMSSS 161 (394)
T ss_pred ccccccC
Confidence 9999864
No 478
>PRK06482 short chain dehydrogenase; Provisional
Probab=86.67 E-value=3.2 Score=37.66 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=49.5
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID 112 (303)
|+.++.|.|++|.+|+.+++.+.+ .+..++.. +++. ....++ .+... .... +-.|
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~-~g~~v~~~-~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D 56 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLA-RGDRVAAT-VRRP--DALDDL---------------KARYG-----DRLWVLQLD 56 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHH---------------HHhcc-----CceEEEEcc
Confidence 345799999999999999999875 56776654 3321 111111 01110 1222 2457
Q ss_pred cCCchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATA--FGMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~--~g~~vVigTTG~ 140 (303)
.+.++...+.+..+.+ .++++|+-..|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 57 VTDSAAVRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 7888777776665544 246778776653
No 479
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=86.61 E-value=3.3 Score=45.66 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (303)
-+|.|+|+ |++|..+++.+. ..|+.=+.++|..... .|++. +..- +..|-+-.....+-+.+ -++.|-|+
T Consensus 25 s~VLIiG~-gGLG~EiaKnL~-laGVg~iti~D~d~v~~sdL~rQf~~~~-~dIGk~Kaea~~~~L~e----LNp~V~V~ 97 (1008)
T TIGR01408 25 SNVLISGM-GGLGLEIAKNLV-LAGVKSVTLHDTEKCQAWDLSSNFFLSE-DDVGRNRAEAVVKKLAE----LNPYVHVS 97 (1008)
T ss_pred CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCeecHhhCCCceecch-HHcCchHHHHHHHHHHH----HCCCceEE
Confidence 68999998 999999999987 5677777788853210 11110 0000 00110000001111221 35666554
Q ss_pred cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcC--CeEEEcCCCcH
Q 022057 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAPTLSI 167 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~--i~vv~a~N~Si 167 (303)
.-......+. =.+..+|+-|+. +.+..-.|.++|++.+ +|++++.-..+
T Consensus 98 ~~~~~l~~e~-----l~~fdvVV~t~~-~~~~~~~in~~cr~~~~~I~fI~~~~~G~ 148 (1008)
T TIGR01408 98 SSSVPFNEEF-----LDKFQCVVLTEM-SLPLQKEINDFCHSQCPPIAFISADVRGL 148 (1008)
T ss_pred EecccCCHHH-----HcCCCEEEECCC-CHHHHHHHHHHHHHcCCCeEEEEEeecce
Confidence 4322111222 236778887654 4455667888898888 88887654443
No 480
>PRK05872 short chain dehydrogenase; Provisional
Probab=86.59 E-value=5.3 Score=37.01 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=51.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID 112 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vID 112 (303)
.++.|.|++|.+|+.+++.+.+ .+.+++. ++++. ..+.++ .+.+. ...++ ..|
T Consensus 10 k~vlItGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~l~~~---------------~~~l~-----~~~~~~~~~~D 65 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHA-RGAKLAL-VDLEE--AELAAL---------------AAELG-----GDDRVLTVVAD 65 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHhc-----CCCcEEEEEec
Confidence 4799999999999999999874 6777654 44421 111111 11111 12233 268
Q ss_pred cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 113 FTDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 113 fT~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.+.++.+.+.+..+.+. ++++|+-..|.
T Consensus 66 v~d~~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 66 VTDLAAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 89888888877766553 57888877764
No 481
>PRK07478 short chain dehydrogenase; Provisional
Probab=86.59 E-value=5.4 Score=35.61 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=51.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+.+++.. +++. .+..++. +++-+. ..++. +..|.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~ 65 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAR-EGAKVVVG-ARRQ--AELDQLV--------------AEIRAE---GGEAVALAGDVR 65 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEcCCC
Confidence 4799999999999999998875 57787654 4431 1111111 111100 01122 335888
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++.....+..+.+. ++++++-..|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 66 DEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 888887777766654 57888866653
No 482
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.54 E-value=6.2 Score=37.59 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=51.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eec---CCHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV 109 (303)
-+|.|.|++|.+|+..++.+. ..+.++++...+.. ....+. .++|+ .-+ .++.+.+.+.. ...+|+
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~---k~~~~~---~~lGa~~vi~~~~~~~~~~~i~~~~-~~gvD~ 231 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQ---KVDLLK---NKLGFDEAFNYKEEPDLDAALKRYF-PEGIDI 231 (348)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHH---HHHHHH---HhcCCCEEEECCCcccHHHHHHHHC-CCCcEE
Confidence 369999999999999998665 56888776543221 111111 01222 112 13444332211 125789
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vVigTT 138 (303)
++|++........+......|.=+++|..
T Consensus 232 v~d~vG~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 232 YFDNVGGDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred EEECCCHHHHHHHHHHhccCCEEEEECcc
Confidence 99988655444444444445555556643
No 483
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=2.4 Score=41.00 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=100.1
Q ss_pred CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh------hcCC-CCCCeeecCCHHHHHhccccC
Q 022057 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV------CDME-QPLEIPVMSDLTMVLGSISQS 104 (303)
Q Consensus 32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~------~g~~-~~~gv~v~~dl~~~l~~~~~~ 104 (303)
.-|..-+.|.|++|-.|..+++.+.. .+... ++- |++...+ +|.. ..+++-+..-+++++
T Consensus 3 ~e~e~d~iiYGAtGy~G~lvae~l~~-~g~~~--aLA----gRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~------ 69 (382)
T COG3268 3 MEREYDIIIYGATGYAGGLVAEYLAR-EGLTA--ALA----GRSSAKLDALRASLGPEAAVFPLGVPAALEAMA------ 69 (382)
T ss_pred CCcceeEEEEccccchhHHHHHHHHH-cCCch--hhc----cCCHHHHHHHHHhcCccccccCCCCHHHHHHHH------
Confidence 34457899999999999999999885 44443 221 2222221 1211 011111122345555
Q ss_pred CCccEEEEcCCchhH--HHHHHHHHHcCCCeEEeCCC---CCHHHHHHH-HHHhhhcCCeEEEcCCCc-HHHHH-HHHHH
Q 022057 105 KARAVVIDFTDASTV--YDNVKQATAFGMRSVVYVPH---IQLETVSAL-SAFCDKASMGCLIAPTLS-IGSIL-LQQAA 176 (303)
Q Consensus 105 ~~~DVvIDfT~p~a~--~~~~~~al~~g~~vVigTTG---~~~e~~~~L-~~~a~~~~i~vv~a~N~S-iGv~l-l~~~a 176 (303)
...+||+.+--|-.. ...++.|+.+|.+-.= -|| |- |+.-.+ .+-|++.|+.++-..-|- |-.-+ +..+.
T Consensus 70 ~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~f-e~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~ 147 (382)
T COG3268 70 SRTQVVLNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFF-ENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALL 147 (382)
T ss_pred hcceEEEeccccccccccHHHHHHHHhCCCeee-ccccHHHH-HHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHH
Confidence 478999998877655 7899999999999773 455 22 333333 677888899988777663 22222 23333
Q ss_pred HHhccCCCcEEEEEccC-CCCCC----CcHHHHHHHHHHHhcC
Q 022057 177 ISASFHYKNVEIVESRP-NARDF----PSPDATQIANNLSNLG 214 (303)
Q Consensus 177 ~~~~~~~~dieIiE~Hh-~K~Da----PSGTA~~l~~~i~~~~ 214 (303)
+++-+ .+-=|.+..|- -+-+. --|||....|.++...
T Consensus 148 ~~~~~-d~~~~~~~t~l~l~s~t~~g~S~GTaat~~e~l~~~~ 189 (382)
T COG3268 148 KQALP-DGTEELIATHLALGSFTGSGISGGTAATSVEGLATAG 189 (382)
T ss_pred HhhCc-ccccchhhhheeeeecccCCcccccHHHHHHHHHhcc
Confidence 33322 22335566675 24443 3579999999887743
No 484
>PRK08219 short chain dehydrogenase; Provisional
Probab=86.50 E-value=0.97 Score=39.38 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=25.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
|+++.|.|++|.+|+.+++.+.++ .+++++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~ 32 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLG 32 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEE
Confidence 468999999999999999999865 676654
No 485
>PRK07578 short chain dehydrogenase; Provisional
Probab=86.49 E-value=4.2 Score=34.97 Aligned_cols=28 Identities=39% Similarity=0.581 Sum_probs=23.7
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG 65 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg 65 (303)
|++.|.|++|.+|+.+++.+.++ .+++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~ 28 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVIT 28 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEE
Confidence 37999999999999999998865 66655
No 486
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=86.49 E-value=4.9 Score=39.90 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=63.2
Q ss_pred CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchh-hhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (303)
Q Consensus 34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~~-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (303)
||.||+|+|. |.++..+++++.+ -+++++++... +..+.... +..-++.....+-|.|.+.+++ +++..++|+
T Consensus 1 ~~kkili~g~-g~~~~~~~~aa~~-lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~ 77 (449)
T TIGR00514 1 MLDKILIANR-GEIALRILRACKE-LGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADA 77 (449)
T ss_pred CcceEEEeCC-CHHHHHHHHHHHH-cCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCE
Confidence 5679999997 9999999998775 58998876431 11111000 0000000011122445455542 112357888
Q ss_pred EEEcCC--chhHHHHHHHHHHcCCCeEEeCC--CCC-HHHHHHHHHHhhhcCCeE
Q 022057 110 VIDFTD--ASTVYDNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMGC 159 (303)
Q Consensus 110 vIDfT~--p~a~~~~~~~al~~g~~vVigTT--G~~-~e~~~~L~~~a~~~~i~v 159 (303)
|+-... .+. ......+.+.|++++ |.+ ... -.+...+++++++.|+|+
T Consensus 78 I~pg~g~~se~-~~~a~~~e~~Gi~~~-g~~~~~~~~~~DK~~~r~~l~~~gip~ 130 (449)
T TIGR00514 78 IHPGYGFLSEN-ANFAEQCERSGFTFI-GPSAESIRLMGDKVSAIETMKKAGVPC 130 (449)
T ss_pred EEeCCCccccC-HHHHHHHHHCCCcEE-CcCHHHHHHhCCHHHHHHHHHHCCCCC
Confidence 873221 111 224456677888866 321 110 012345677788888875
No 487
>PRK09186 flagellin modification protein A; Provisional
Probab=86.44 E-value=4.3 Score=36.11 Aligned_cols=84 Identities=24% Similarity=0.266 Sum_probs=48.9
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDfT 114 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. ..+.++. .++..... ....++ ..|.+
T Consensus 5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~-~r~~--~~~~~~~-----------~~l~~~~~----~~~~~~~~~Dl~ 65 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILE-AGGIVIAA-DIDK--EALNELL-----------ESLGKEFK----SKKLSLVELDIT 65 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEE-ecCh--HHHHHHH-----------HHHHhhcC----CCceeEEEecCC
Confidence 5799999999999999999875 67887764 3321 1111110 00000000 012333 45888
Q ss_pred CchhHHHHHHHHHH--cCCCeEEeCC
Q 022057 115 DASTVYDNVKQATA--FGMRSVVYVP 138 (303)
Q Consensus 115 ~p~a~~~~~~~al~--~g~~vVigTT 138 (303)
.++...+.+..+.+ -++.+|+-..
T Consensus 66 d~~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 66 DQESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECC
Confidence 88877776665544 2367777554
No 488
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.25 E-value=7.3 Score=34.06 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=51.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDfT 114 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++....+.. ..... ..+.+.. ....+.+ -.|++
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~--~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~ 65 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAA-QGANVVINYASSE--AGAEA---------------LVAEIGA--LGGKALAVQGDVS 65 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCch--hHHHH---------------HHHHHHh--cCCceEEEEcCCC
Confidence 5799999999999999999885 4788765543321 00000 0111110 0012222 24888
Q ss_pred CchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATA--FGMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~--~g~~vVigTTG~ 140 (303)
.++...+.+....+ .++..|+-..|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 66 DAESVERAVDEAKAEFGGVDILVNNAGI 93 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88888777766554 257788777654
No 489
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.24 E-value=7.4 Score=34.42 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=50.6
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT 114 (303)
.++.|.|++|.+|+.+++.+.+ .+.++++...... .....+ .+.+.. ...++. +..|.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~-~G~~V~~~~r~~~--~~~~~~---------------~~~l~~--~~~~~~~~~~D~~ 66 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAG-AGAHVVVNYRQKA--PRANKV---------------VAEIEA--AGGRASAVGADLT 66 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCch--HhHHHH---------------HHHHHh--cCCceEEEEcCCC
Confidence 5799999999999999998875 5788876532211 011110 111110 001122 345788
Q ss_pred CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 115 ~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
.++.....+....+. ++++|+-..|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 67 DEESVAALMDTAREEFGGLDALVLNASG 94 (248)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 888877766655443 57888766654
No 490
>PRK12827 short chain dehydrogenase; Provisional
Probab=86.18 E-value=4.7 Score=35.46 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=52.6
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf 113 (303)
++++.|.|++|.+|+.+++.+.+ .+.+++.+..... .+.... ..+.+.+.. ....+. +..|.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~------------~~~~~~~~~--~~~~~~~~~~Dl 68 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAA-DGADVIVLDIHPM--RGRAEA------------DAVAAGIEA--AGGKALGLAFDV 68 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCeEEEEcCccc--ccHHHH------------HHHHHHHHh--cCCcEEEEEccC
Confidence 46899999999999999999885 5778766432111 000000 001111110 001222 34578
Q ss_pred CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (303)
Q Consensus 114 T~p~a~~~~~~~al~~--g~~vVigTTG~ 140 (303)
+.++.....+..+.+. +++.|+-..|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 69 RDFAATRAALDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 8888887777766554 57888877764
No 491
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.09 E-value=3.5 Score=43.93 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.8
Q ss_pred CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (303)
Q Consensus 33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (303)
+..-||+|+|+ |-||..|+..+. ..+++++- +|.
T Consensus 333 ~~i~~v~ViGa-G~MG~gIA~~~a-~~G~~V~l-~d~ 366 (737)
T TIGR02441 333 RPVKTLAVLGA-GLMGAGIAQVSV-DKGLKTVL-KDA 366 (737)
T ss_pred CcccEEEEECC-CHhHHHHHHHHH-hCCCcEEE-ecC
Confidence 33458999998 999999999877 45888874 664
No 492
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.00 E-value=2.3 Score=39.88 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=49.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCe---eec--CCHHHHHhccccCCCccE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM--SDLTMVLGSISQSKARAV 109 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~--~dl~~~l~~~~~~~~~DV 109 (303)
-+|.|.|++|.+|+..++.+. ..+. ++++...++. ....+.. .+|+ ..+ .++.+.+.++. ...+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~---~~~~~~~---~lGa~~vi~~~~~~~~~~i~~~~-~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDE---KCQLLKS---ELGFDAAINYKTDNVAERLRELC-PEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHH---HHHHHHH---hcCCcEEEECCCCCHHHHHHHHC-CCCceE
Confidence 379999999999999998655 5677 6776554321 1111110 1221 111 23333332211 135788
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057 110 VIDFTDASTVYDNVKQATAFGMRSVVYV 137 (303)
Q Consensus 110 vIDfT~p~a~~~~~~~al~~g~~vVigT 137 (303)
++|++......+.+......|.=+.+|.
T Consensus 228 vid~~g~~~~~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 228 YFDNVGGEISDTVISQMNENSHIILCGQ 255 (345)
T ss_pred EEECCCcHHHHHHHHHhccCCEEEEEee
Confidence 8887755444444444344455444553
No 493
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=85.99 E-value=3.1 Score=40.82 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=47.5
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT 114 (303)
|||.|+|. |.=...+++.+.+.++...+.+ ++...|. .... + .+.+ +.|.+++++ +++..++|++|-.+
T Consensus 1 ~kvliiG~-G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~---~~~~---~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 70 (420)
T PRK00885 1 MKVLVIGS-GGREHALAWKLAQSPLVEKVYV-APGNAGT---ALLA---E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP 70 (420)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-eCCCHHH---Hhhc---c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 69999997 7655668888877666544333 4322111 1110 1 1111 245555432 12235789887433
Q ss_pred CchhHHHHHHHHHHcCCCeE
Q 022057 115 DASTVYDNVKQATAFGMRSV 134 (303)
Q Consensus 115 ~p~a~~~~~~~al~~g~~vV 134 (303)
...........+.+.|++++
T Consensus 71 e~~l~~~~~~~l~~~gi~~~ 90 (420)
T PRK00885 71 EAPLVAGIVDAFRAAGLPIF 90 (420)
T ss_pred chHHHHHHHHHHHHCCCcEE
Confidence 32233445556667888865
No 494
>PRK12742 oxidoreductase; Provisional
Probab=85.92 E-value=4.7 Score=35.37 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.3
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~ 36 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFT 36 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEe
Confidence 5799999999999999998875 57777654
No 495
>PRK07023 short chain dehydrogenase; Provisional
Probab=85.88 E-value=1.1 Score=39.79 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=26.7
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~ 66 (303)
|+++.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGV 31 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHh-CCCEEEEE
Confidence 46999999999999999999875 58887764
No 496
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=85.87 E-value=3.5 Score=45.55 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=61.8
Q ss_pred eEEEeecCCCCC---ceeEEEEcCCcHHHHHHHHHHHhcCCc-----EEEEEEecC-----C-----------CCcchhh
Q 022057 23 RFISCSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH-----S-----------VGEDIGM 78 (303)
Q Consensus 23 ~~~~~~~~~~~~---~ikV~V~G~~GrMG~~i~~~i~~~~~~-----eLvg~vd~~-----~-----------~g~d~~~ 78 (303)
|-+.++....|. ..||.|+|| |.+|..+++.+. ..|+ --+-++|.+ . .|+.-.+
T Consensus 404 rqi~l~G~~~Q~kL~~~kVlvvGa-GGlG~e~lknLa-l~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~ 481 (1008)
T TIGR01408 404 AQIAVFGDTFQQKLQNLNIFLVGC-GAIGCEMLKNFA-LMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSY 481 (1008)
T ss_pred HHHHHcCHHHHHHHhhCcEEEECC-ChHHHHHHHHHH-HhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHH
Confidence 334444444443 368999998 999999999887 4555 233456521 0 1211111
Q ss_pred hh-----cCCCCCCeeec-CCH---------HHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCC-CC
Q 022057 79 VC-----DMEQPLEIPVM-SDL---------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HI 140 (303)
Q Consensus 79 ~~-----g~~~~~gv~v~-~dl---------~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTT-G~ 140 (303)
.+ .+.....+..+ ..+ ++.+ .++|+||++.. .++-.-.-..|.++++|+|.+-| |+
T Consensus 482 vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~------~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~ 554 (1008)
T TIGR01408 482 TAADATLKINPQIKIDAHQNRVGPETETIFNDEFY------EKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGT 554 (1008)
T ss_pred HHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHh------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCc
Confidence 11 11112222221 111 2233 37899999874 45545566899999999996644 54
No 497
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=85.86 E-value=1.9 Score=38.02 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.4
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEE
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG 65 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg 65 (303)
|+|.|.|++|.+|+.+++.+.+. .+..++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999865 3555543
No 498
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=85.82 E-value=7.4 Score=34.69 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCH---HHHHhccccCCCcc-EEEEcCC---chhHHH
Q 022057 49 RAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL---TMVLGSISQSKARA-VVIDFTD---ASTVYD 121 (303)
Q Consensus 49 ~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl---~~~l~~~~~~~~~D-VvIDfT~---p~a~~~ 121 (303)
-..++++.+.-++-++|++-... ...++.++.++ +++.+ ..+| |.+|.|. |+.+.+
T Consensus 21 ~~dI~aik~~v~lPIIGi~K~~y------------~~~~V~ITPT~~ev~~l~~-----aGadIIAlDaT~R~Rp~~l~~ 83 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPIIGIIKRDY------------PDSDVYITPTLKEVDALAE-----AGADIIALDATDRPRPETLEE 83 (192)
T ss_dssp HHHHHHHHTTB-S-EEEE-B-SB------------TTSS--BS-SHHHHHHHHH-----CT-SEEEEE-SSSS-SS-HHH
T ss_pred HHHHHHHHHhcCCCEEEEEeccC------------CCCCeEECCCHHHHHHHHH-----cCCCEEEEecCCCCCCcCHHH
Confidence 34566777777888999885432 12345454444 44554 5788 4789883 444443
Q ss_pred --------------------HHHHHHHcCCCeEEeCC--CCCH------HHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057 122 --------------------NVKQATAFGMRSVVYVP--HIQL------ETVSALSAFCDKASMGCLIAPTLSI 167 (303)
Q Consensus 122 --------------------~~~~al~~g~~vVigTT--G~~~------e~~~~L~~~a~~~~i~vv~a~N~Si 167 (303)
....|.+.|.++| ||| |+++ .+++.++++++. ++|++.=.++.-
T Consensus 84 li~~i~~~~~l~MADist~ee~~~A~~~G~D~I-~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~t 155 (192)
T PF04131_consen 84 LIREIKEKYQLVMADISTLEEAINAAELGFDII-GTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE-E-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--S
T ss_pred HHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE-EcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCC
Confidence 4455677777766 666 6542 356777787775 688776555543
No 499
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=85.78 E-value=1.8 Score=41.07 Aligned_cols=70 Identities=19% Similarity=0.363 Sum_probs=46.2
Q ss_pred eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhhcCCCCCCeeecC--CH-----HHHHh
Q 022057 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--DL-----TMVLG 99 (303)
Q Consensus 36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g--~-----d~~~~~g~~~~~gv~v~~--dl-----~~~l~ 99 (303)
|||+++|. +.++....+.+.+. ++++++++..+. .+ . +..+++ .+.++|++. ++ .+.+.
T Consensus 1 mkIvf~G~-~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~ 75 (309)
T PRK00005 1 MRIVFMGT-PEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA 75 (309)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence 69999996 99999999998864 899999996321 11 1 234444 356777743 21 22333
Q ss_pred ccccCCCccEEEEcC
Q 022057 100 SISQSKARAVVIDFT 114 (303)
Q Consensus 100 ~~~~~~~~DVvIDfT 114 (303)
+ .++|++|-++
T Consensus 76 ~----~~~Dliv~~~ 86 (309)
T PRK00005 76 A----LNADVIVVVA 86 (309)
T ss_pred h----cCcCEEEEeh
Confidence 2 5899888754
No 500
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.63 E-value=2.5 Score=39.87 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=24.3
Q ss_pred ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (303)
Q Consensus 35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v 67 (303)
.|||+|+|+ |.||..++-.+.+ .+.+++.+.
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~-~G~~V~lv~ 32 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLAR-AGLPVRLIL 32 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHh-CCCCeEEEE
Confidence 579999998 9999999998875 455555433
Done!