Your job contains 1 sequence.
>022058
MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ
HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVY
VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTML
GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG
EVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRP
GMH
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022058
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 1000 7.9e-101 1
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 960 1.4e-96 1
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 831 6.4e-83 1
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 815 3.2e-81 1
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 796 3.3e-79 1
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 711 3.3e-70 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 163 1.0e-09 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 162 1.3e-09 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 156 9.9e-09 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 156 9.9e-09 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 156 9.9e-09 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 156 1.0e-08 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 156 1.0e-08 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 155 1.4e-08 1
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 156 1.5e-08 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 154 1.6e-08 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 126 9.3e-08 1
GENEDB_PFALCIPARUM|PFF0300w - symbol:PFF0300w "RNA-bindin... 98 2.8e-07 2
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 143 3.1e-07 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 138 4.9e-07 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 142 6.4e-07 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 142 6.8e-07 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 141 1.0e-06 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 127 1.1e-06 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 135 1.5e-06 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 135 1.6e-06 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 135 1.6e-06 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 135 1.9e-06 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 135 1.9e-06 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 135 1.9e-06 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 138 1.9e-06 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 134 2.4e-06 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 134 2.4e-06 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 133 3.2e-06 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 137 3.7e-06 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 137 3.7e-06 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 131 3.8e-06 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 132 4.1e-06 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 130 4.9e-06 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 130 4.9e-06 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 123 5.1e-06 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 134 5.2e-06 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 130 5.7e-06 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 131 6.1e-06 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 130 6.2e-06 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 130 6.2e-06 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 130 6.4e-06 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 130 6.4e-06 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 130 6.5e-06 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 130 6.5e-06 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 129 6.5e-06 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 130 6.7e-06 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 130 6.7e-06 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 130 6.8e-06 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 130 6.8e-06 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 130 6.9e-06 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 130 6.9e-06 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 128 8.9e-06 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 128 9.0e-06 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 115 9.0e-06 2
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 132 9.0e-06 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 134 9.8e-06 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 129 1.0e-05 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 128 1.0e-05 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 128 1.0e-05 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 128 1.1e-05 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 128 1.1e-05 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 128 1.1e-05 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 128 1.1e-05 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 128 1.1e-05 1
WB|WBGene00004704 - symbol:rsp-7 species:6239 "Caenorhabd... 91 1.2e-05 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 130 1.3e-05 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 126 1.4e-05 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 126 1.4e-05 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 126 1.4e-05 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 117 1.7e-05 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 126 1.8e-05 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 125 1.8e-05 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 102 1.9e-05 2
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 128 1.9e-05 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 128 2.0e-05 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 128 2.0e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 105 2.0e-05 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 128 2.1e-05 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 128 2.1e-05 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 128 2.2e-05 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 128 2.2e-05 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 124 2.4e-05 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 128 2.5e-05 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 125 2.8e-05 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 124 2.9e-05 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 122 3.1e-05 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 127 3.2e-05 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 127 3.3e-05 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 127 3.3e-05 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 127 3.3e-05 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 127 3.3e-05 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 123 3.3e-05 1
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 128 3.3e-05 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 127 3.4e-05 1
WARNING: Descriptions of 82 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 200/282 (70%), Positives = 229/282 (81%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNF-ADD----NKQSA-- 81
++ES + KLV MF KLNPLAKEFFPSYY ++ + N ADD KQS
Sbjct: 43 ETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQVAKANQFLPADDFETTKKQSGEE 102
Query: 82 --IDXXXXXXXXXXXX-XQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
+D QGR+RL+GR +AQREDS+RRTVYVSDIDQ++TEE LAGLFS
Sbjct: 103 FDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 162
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+CGQVVDCR+CGDPHSVLRFAFVEFAD+ GA AL+LGGTMLG+YPVRVLPSKTAILPVN
Sbjct: 163 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVN 222
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIA 258
PTFLPRSEDEREMC+RT+YCTNIDKKV QA+V+ FFE+ACG EVTRLRLLGD +HSTRIA
Sbjct: 223 PTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACG-EVTRLRLLGDQLHSTRIA 281
Query: 259 FVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRP 300
FVEFA+A+SA+ ALNCSGMV+GSQPIRVSPSKTPVRPR+TRP
Sbjct: 282 FVEFALADSALSALNCSGMVVGSQPIRVSPSKTPVRPRITRP 323
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 193/274 (70%), Positives = 224/274 (81%)
Query: 29 KSESEFT-VQKLVDMFTKLNPLAKEFFPSYYHQ-HTDHHFSVINNNFADDNKQSAIDXXX 86
KS+ E+ ++KLV MF KLNP AKEFFPSY + F + +DNK+ AI+
Sbjct: 42 KSKPEYDQMKKLVAMFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNKKVAINRRR 101
Query: 87 XXXXXXXXXXQGRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
QGR+ RL GRA +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVD
Sbjct: 102 RNNYN-----QGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVD 156
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAFVEF+D+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRS
Sbjct: 157 CRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRS 216
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
EDEREMCSRT+YCTN+DK + +V FF++ACG EVTRLRLLGD VHSTRIAFVEFA+A
Sbjct: 217 EDEREMCSRTIYCTNVDKNATEDDVNTFFQSACG-EVTRLRLLGDQVHSTRIAFVEFAMA 275
Query: 266 ESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
ESA+ ALNCSG+VLGSQPIRVSPSKTPVR R+TR
Sbjct: 276 ESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITR 309
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 165/273 (60%), Positives = 204/273 (74%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS----VINNNFADDNKQSAIDXXXXXXXX 91
+++L ++ +KLNP+AKEF P + + F+ +NN F ++
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGN-FPVNEDGSFRRK 124
Query: 92 XXXXXQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CGD
Sbjct: 125 KSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGD 184
Query: 152 PHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
P+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDEREM
Sbjct: 185 PNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREM 244
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
C+RT+YCTNIDKK+ Q ++K FFE+ CG EV RLRLLGD+ H TRI FVEF +AESAI A
Sbjct: 245 CARTIYCTNIDKKLTQTDIKLFFESVCG-EVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303
Query: 272 LNCSGMVLGSQPIRVSPSKTPVRPR-VTRPGMH 303
LNCSG++LGS PIRVSPSKTPVR R + R MH
Sbjct: 304 LNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 165/267 (61%), Positives = 201/267 (75%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHTD--HHFSVINNNFADDNKQSAIDXXXXXXXXX 92
++ L D F+KLNP+A+EF P S + + NNFA K + D
Sbjct: 87 IKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGLGFTNNFAAPPKLA--DGNDHFPRRR 144
Query: 93 XXXXQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
QG++R++ R AQ++D +RRTVYVSDIDQ +TEE LAG+F +CGQVVDCRVCGDP
Sbjct: 145 RSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDP 204
Query: 153 HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKTAI PVNPTFLPRSEDEREMC
Sbjct: 205 NSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMC 264
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVYCTNIDK++ Q ++K FFE CG EV RLRL GD+ H TRIAFVEFA+AESAI AL
Sbjct: 265 VRTVYCTNIDKRITQIDLKGFFEMLCG-EVHRLRL-GDYHHQTRIAFVEFAMAESAIAAL 322
Query: 273 NCSGMVLGSQPIRVSPSKTPVRPRVTR 299
+CSG+VLG+ PIRVSPSKTPVRP R
Sbjct: 323 HCSGIVLGALPIRVSPSKTPVRPHFPR 349
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 161/262 (61%), Positives = 195/262 (74%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDH-----HFSVI-----NNNFADDNKQSAIDXX 85
+++L ++F+KLNP+A+EF P ++ + F+ NN FA
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGN-GGYGNE 141
Query: 86 XXXXXXXXXXXQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVD
Sbjct: 142 NGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
EDEREMC+RT+YCTNIDKKV Q++VK FFE+ CG EV RLRLLGD+ HSTRIAFVEF +A
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCG-EVYRLRLLGDYQHSTRIAFVEFVMA 320
Query: 266 ESAILALNCSGMVLGSQPIRVS 287
ESAI ALNCSG+VLGS PIR S
Sbjct: 321 ESAIAALNCSGVVLGSLPIRSS 342
Score = 161 (61.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 208 ERE-MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
+RE + RTVY +++D++V + ++ F +CG +V R+ GD R AF+EF E
Sbjct: 166 QREDVIRRTVYVSDLDQQVTEEQLAGLF-VSCG-QVVDCRICGDPNSVLRFAFIEFTDEE 223
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRP 295
A+ ALN SG +LG P++V PSKT + P
Sbjct: 224 GAMTALNLSGTMLGFYPVKVLPSKTAIAP 252
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 145/251 (57%), Positives = 173/251 (68%)
Query: 46 LNPLAKEFFPSYYHQHTDHHFSVINNNFADDNK--QSAIDXXXXXXXXXXXXXQGRKRLS 103
LNP+AKEF PS+ Q HH N F N + I +GR ++
Sbjct: 66 LNPMAKEFVPSFLAQ--THHSEFWGNRFWFTNHFPKQTIFLIGQFATMRRNFGKGRPWIT 123
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
+ Q ED ++RTVYVSDID +TEE+LA LF SCGQVVDCR+CGD S+LRFAF+EF
Sbjct: 124 KKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEF 183
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
D GAR+AL GTM G +P+RV SKTAI PVNP+FLP+S+DE E C +TVYCTNIDK
Sbjct: 184 TDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDK 243
Query: 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQP 283
+V + E++ FF+ CG EV LRLLGD H TRIAFVEF +AESAI ALNCSG+VLG P
Sbjct: 244 EVTKMELENFFKTVCG-EVHHLRLLGDFYHQTRIAFVEFKLAESAISALNCSGVVLGELP 302
Query: 284 IRVSPSKTPVR 294
IRVSPSKTPVR
Sbjct: 303 IRVSPSKTPVR 313
Score = 164 (62.8 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 41/96 (42%), Positives = 56/96 (58%)
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAF 259
T L ++ED M RTVY ++ID +V + ++ F +CG +V R+ GD+ R AF
Sbjct: 126 TNLVQNED---MIKRTVYVSDIDNQVTEEQLASLF-LSCG-QVVDCRMCGDYKSILRFAF 180
Query: 260 VEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
+EF AE A AL SG + GS PIRV SKT + P
Sbjct: 181 IEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAP 216
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 163 (62.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 57/198 (28%), Positives = 98/198 (49%)
Query: 110 QREDSVRRTVYVSDIDQNITE----ERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEF 163
+R+DS T++V D+ ++T+ E ++SS +VV R+ G + FV+F
Sbjct: 169 RRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKG---YGFVKF 225
Query: 164 ADE-HGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFL-PRS-EDEREMCSRTVY 217
ADE RA + G + P+R+ P+ K P T+ P++ + E + + T++
Sbjct: 226 ADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIF 285
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNC 274
+D V + ++Q F GE+ +++ V R FV+F A AE A+ +LN
Sbjct: 286 VGGLDPTVAEEHLRQVFSPY--GELVHVKI----VAGKRCGFVQFGTRASAEQALSSLN- 338
Query: 275 SGMVLGSQPIRVSPSKTP 292
G LG Q IR+S ++P
Sbjct: 339 -GTQLGGQSIRLSWGRSP 355
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 52/197 (26%), Positives = 97/197 (49%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R ++R+ S R + V+V ++D++I ++L +FS+ G+V+ C+V D
Sbjct: 8 KLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS 67
Query: 154 SVLR-FAFVEFADEHGARAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
V + + FV+F + A N GT++ + V P F+ R + ++
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSR 116
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAIL 270
VY N+ + A++K+ F GE+T ++ D S R FV F AE+A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEF--GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVT 174
Query: 271 ALN-CSGMVLGSQPIRV 286
A+ +G+V+ + + V
Sbjct: 175 AIEKMNGVVVDEKELHV 191
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 53/193 (27%), Positives = 86/193 (44%)
Query: 108 RAQREDS-VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD 165
R Q + S V VYV ++ + T+ L LF G++ V D R F FV F
Sbjct: 109 RGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK 168
Query: 166 EHGARAALN-LGGTMLGYYPVRV--LPSKTAILPVNPTFLPRSEDEREMCSR---TVYCT 219
A A+ + G ++ + V KT + R+M +R +Y
Sbjct: 169 AEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVK 228
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIA----FVEFAVAESAILA-LNC 274
N+D V ++++ F G +T +++ VHS I+ FVEF+ +E A A L
Sbjct: 229 NLDDSVDNTKLEELFSEF--GTITSCKVM---VHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 275 SGMVLGSQPIRVS 287
+G ++G++PI VS
Sbjct: 284 NGKMVGNKPIYVS 296
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 156 (60.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 43/137 (31%), Positives = 70/137 (51%)
Query: 169 ARAALNLGGTMLGYYPVRVL-PSKTAI--LPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A ++L + + LG P L P+ TA+ +P P + + RTVY N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 226 PQAE-VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPI 284
A+ + +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+
Sbjct: 81 TTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPL 138
Query: 285 RVSPSKTP-VRPRVTRP 300
+++ S V+P P
Sbjct: 139 KINHSNNAIVKPPEMTP 155
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 156 (60.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 43/137 (31%), Positives = 70/137 (51%)
Query: 169 ARAALNLGGTMLGYYPVRVL-PSKTAI--LPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A ++L + + LG P L P+ TA+ +P P + + RTVY N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 226 PQAE-VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPI 284
A+ + +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+
Sbjct: 81 TTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPL 138
Query: 285 RVSPSKTP-VRPRVTRP 300
+++ S V+P P
Sbjct: 139 KINHSNNAIVKPPEMTP 155
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 156 (60.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 139 (54.0 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 42/137 (30%), Positives = 69/137 (50%)
Query: 169 ARAALNLGGTMLGYYPVRVL-PSKTAI--LPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A ++L + + LG P L P+ T + +P P + + RTVY N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 226 PQAE-VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPI 284
A+ + +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+
Sbjct: 81 TTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPL 138
Query: 285 RVSPSKTP-VRPRVTRP 300
+++ S V+P P
Sbjct: 139 KINHSNNAIVKPPEMTP 155
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
Score = 133 (51.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL---PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L + + LG P L A L P P + + RTVY N++ + A+
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 230 -VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++++
Sbjct: 82 QLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINH 139
Query: 289 SKTP-VRPRVTRP 300
S V+P P
Sbjct: 140 SNNAIVKPPEMTP 152
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
Score = 133 (51.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL---PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L + + LG P L A L P P + + RTVY N++ + A+
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 230 -VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++++
Sbjct: 82 QLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINH 139
Query: 289 SKTP-VRPRVTRP 300
S V+P P
Sbjct: 140 SNNAIVKPPEMTP 152
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 155 (59.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/94 (38%), Positives = 51/94 (54%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q+ T ++L F G V R+ GD RFAFVEFAD+
Sbjct: 167 DEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVAR 226
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 227 ALTYNGVMFGDRPLKINHSNNAIVKP-PELTPQA 259
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 185 VRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE-VKQFFEAACGGEVT 243
V L + +A P+ P DE RTVY N++ + A+ + +FF+ G+V
Sbjct: 145 VATLSAVSAQPPLMGNVDPSKVDE---IRRTVYVGNLNSQSTTADQLLKFFKQV--GDVK 199
Query: 244 RLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP-VRPRVTRP 300
+R+ GD TR AFVEFA +S AL +G++ G +P++++ S V+P P
Sbjct: 200 FVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKPPELTP 257
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 156 (60.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 270
Score = 133 (51.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL---PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L + + LG P L A L P P + + RTVY N++ + A+
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 197
Query: 230 -VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++++
Sbjct: 198 QLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINH 255
Query: 289 SKTP-VRPRVTRP 300
S V+P P
Sbjct: 256 SNNAIVKPPEMTP 268
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 154 (59.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 50/190 (26%), Positives = 102/190 (53%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAEV 230
AL T + R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 AL----TAMNK---RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 126 (49.4 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAF 160
A R +E ++VYV ++D ++T E L F+SCG V + C + G P FA+
Sbjct: 44 ALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAY 100
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+EF++ AL L G+ML P++V P +T +
Sbjct: 101 IEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 30/95 (31%), Positives = 53/95 (55%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV 264
D+ + +++VY N+D V E++ F A+CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHF-ASCGS-VNRVTILCDKFTGHPKGFAYIEFSE 105
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
AL +G +L +P++V+P +T V P ++R
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV-PGMSR 139
>GENEDB_PFALCIPARUM|PFF0300w [details] [associations]
symbol:PFF0300w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966051.1
ProteinModelPortal:C6KSQ9 EnsemblProtists:PFF0300w:mRNA
GeneID:3885781 KEGG:pfa:PFF0300w EuPathDB:PlasmoDB:PF3D7_0606100
HOGENOM:HOG000281446 ProtClustDB:CLSZ2497377 Uniprot:C6KSQ9
Length = 582
Score = 98 (39.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVE 261
L ++ ++ S+ VY NI +K + ++K FF+ G T +L + AFVE
Sbjct: 142 LNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNV--GNTTSYKLQYNEQKKVHTAFVE 199
Query: 262 FAVAESAILALNCSGMVLGSQPI 284
F E A ALN SG +G I
Sbjct: 200 FKNEEHAKAALNLSGTKVGLHEI 222
Score = 92 (37.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 26/100 (26%), Positives = 44/100 (44%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
S+ VYV ++ +ITEE + F SC +++ P ++ +EF G A
Sbjct: 6 SIANVVYVKNLSSDITEENIREKFGSCDEIISITFKNFPGLNQKYCQIEFKTSEGITNAS 65
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
L G L P+ V + I N + L +E ++ + S
Sbjct: 66 RLNGESLLNVPMVVSVIEPIINNTNLSELSTTECDKNVNS 105
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 143 (55.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 164 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 223
Query: 172 ALNLGGTMLGYYPVR 186
AL G M G P++
Sbjct: 224 ALAFNGVMFGDRPLK 238
Score = 131 (51.2 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 39/113 (34%), Positives = 59/113 (52%)
Query: 177 GTMLGYYPVRVL-PSKTAI--LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE-VKQ 232
GT LG P L P+ TA+ +P P + + RTVY N++ + A+ + +
Sbjct: 129 GT-LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 187
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 188 FFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 238
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 138 (53.6 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 43/168 (25%), Positives = 80/168 (47%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV + +SA+ A + G LG
Sbjct: 224 EPY--GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 142 (55.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 51/204 (25%), Positives = 99/204 (48%)
Query: 99 RKRLSGRAFRAQREDSVRRT--VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+++L+ + + QR+ ++ VYV I + E+ + F+ G + + DP +
Sbjct: 110 QQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQK 169
Query: 157 R--FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
FAFVE+ GA+ AL + G ++G ++V + + +P + ++E + +
Sbjct: 170 HKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFN 227
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL-GDHVHSTR-IAFVEFA---VAESA 268
R +Y +I + + ++K FEA G + +L G +H+ + F+E+A + A
Sbjct: 228 R-IYVASIHPDLSEEDIKSVFEAF--GPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEA 284
Query: 269 ILALNCSGMVLGSQPIRVSPSKTP 292
I ++N LG Q +RV S TP
Sbjct: 285 IASMNLFD--LGGQLLRVGRSITP 306
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 142 (55.0 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 48/175 (27%), Positives = 81/175 (46%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+D N+T+ +L F+ QVV RVC D ++ L + +V +++ A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ- 105
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y L K + T+ R R ++ N+DK V + + F
Sbjct: 106 ---KLNY---SYLNGKM----IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF- 154
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ CG + ++ DH+ +R FV+F +SA A+ +G VL + I V P
Sbjct: 155 SGCG-TIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 47/189 (24%), Positives = 82/189 (43%)
Query: 108 RAQREDSVRRT-VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD 165
R D ++ T VYV ++ + T++ L F G + V D R F FV F +
Sbjct: 215 RESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 274
Query: 166 -EHGARAALNLGGTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDE-REMCSRTVYCTN 220
E ARA L G +Y + L ++ + S D + +Y N
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKN 334
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMV 278
+D V ++++ F A G +T +++ D +++ FV F+ A A LN +G +
Sbjct: 335 LDDTVTDEKLRELF--AEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKM 392
Query: 279 LGSQPIRVS 287
+G +P+ V+
Sbjct: 393 VGGKPLYVA 401
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/174 (28%), Positives = 82/174 (47%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE-HGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ +P R+ V+ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D ++ FV + AE+A A+ + +GM+L + + V
Sbjct: 151 AAF--GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV 202
Score = 127 (49.8 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 47/176 (26%), Positives = 78/176 (44%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID +V E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 227 IKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 127 (49.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 52/169 (30%), Positives = 82/169 (48%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 94 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALN 273
++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 94 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 94 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 94 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 122 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 168
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 169 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 226
Query: 285 RVSPSKTP 292
V + P
Sbjct: 227 TVKFANNP 234
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 123 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 169
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 170 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 227
Query: 285 RVSPSKTP 292
V + P
Sbjct: 228 TVKFANNP 235
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 123 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 169
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 170 LEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 227
Query: 285 RVSPSKTP 292
V + P
Sbjct: 228 TVKFANNP 235
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 48/174 (27%), Positives = 85/174 (48%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D L +A+V F + E G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ +P+ R+M + V+ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQR-----DPSL-------RKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G++ ++ D + + + FV F ESA A+ + +GM+L + + V
Sbjct: 189 SAF--GKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 118 TVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLR--FAFVEFADEHGA-RAAL 173
T++V D+ +T+ L+ F + G V +V D + + FV FADE+ RA
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 174 NLGGTMLGYYPVRVLPS--KTAILPVNPTFLPRSED----EREMCSRTVYCTNIDKKVPQ 227
+ G P+R+ P+ K A LP+ P ++ + + + T++ +D V
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNA-LPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRV 286
E+K F GE+ +++ R FV++A SA AL+ +G LG Q IR+
Sbjct: 274 DELKSIFGQF--GELLHVKI----PPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 287 SPSKTP 292
S ++P
Sbjct: 328 SWGRSP 333
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 55/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + Q++T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 121
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 122 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 168
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 169 LEQLFSQY--GRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPI 226
Query: 285 RVSPSKTP 292
V + P
Sbjct: 227 TVKFANNP 234
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 133 (51.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 56/189 (29%), Positives = 89/189 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV---LRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q
Sbjct: 121 AEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 49/180 (27%), Positives = 86/180 (47%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ ++V ++D++I + L FS G ++ C+V D + +
Sbjct: 88 RLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYG 147
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VY 217
FV + DE A+ A+ + G LG SK V P F+ +SE T +Y
Sbjct: 148 FVHYEDEESAKEAIEKVNGVQLG--------SKNVY--VGP-FIKKSERATNDTKFTNLY 196
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSG 276
N V + ++Q F GE+T + + D+ + + F+ +A AESA A+ N +G
Sbjct: 197 VKNFPDSVTETHLRQLFNPY--GEITSMIVKMDN-KNRKFCFINYADAESAKNAMDNLNG 253
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 43/176 (24%), Positives = 83/176 (47%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+++++TE L +F++ G V RVC D L +A+V + + A AL+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +P+ R+ + ++ N+DK + K F+
Sbjct: 77 ----LNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKSIDN---KALFD 122
Query: 236 A-ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV + ESA A+ +G+ LGS+ + V P
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 49/180 (27%), Positives = 86/180 (47%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ ++V ++D++I + L FS G ++ C+V D + +
Sbjct: 88 RLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYG 147
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VY 217
FV + DE A+ A+ + G LG SK V P F+ +SE T +Y
Sbjct: 148 FVHYEDEESAKEAIEKVNGVQLG--------SKNVY--VGP-FIKKSERATNDTKFTNLY 196
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSG 276
N V + ++Q F GE+T + + D+ + + F+ +A AESA A+ N +G
Sbjct: 197 VKNFPDSVTETHLRQLFNPY--GEITSMIVKMDN-KNRKFCFINYADAESAKNAMDNLNG 253
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 43/176 (24%), Positives = 83/176 (47%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+++++TE L +F++ G V RVC D L +A+V + + A AL+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +P+ R+ + ++ N+DK + K F+
Sbjct: 77 ----LNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKSIDN---KALFD 122
Query: 236 A-ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV + ESA A+ +G+ LGS+ + V P
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 131 (51.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYLNAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIN---TLNG---LR-LQSKTIKVSVAR---PSSESIKDA---NLYISGLPRTMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 120 KDVEDMFLPF--GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 55/188 (29%), Positives = 89/188 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + + A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 122
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E
Sbjct: 123 EKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKE 169
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 170 LEQLFSQF--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPI 227
Query: 285 RVSPSKTP 292
V + P
Sbjct: 228 TVKFANNP 235
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T+E L LFSS G++ ++ D HS L + FV +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHS-LGYGFVNYVTAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIN---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRTMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 120 KDVEDMFSPF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYLNAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL-PRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L SKT + +F P SE ++ +Y + + + +
Sbjct: 73 DAERAIN---TLNG---LR-LQSKT----IKVSFARPSSETIKDA---NLYISGLPRTMT 118
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q +V+ F G + R+L D S +AF+ F + AE AI + N S
Sbjct: 119 QKDVEDMFLPF--GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSS 176
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 177 EPITVKFAANP 187
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 123 (48.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV--VDC---RVCGDPHSVLRFAFVEFA 164
+R DS RR++YV ++D T + L F+SCG V V R G P FA++EF+
Sbjct: 59 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 115
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
D R A+ L T+ ++V P +T I
Sbjct: 116 DRESVRTAMALDETLFRGRVIKVSPKRTNI 145
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 134 (52.2 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 45/175 (25%), Positives = 77/175 (44%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+D N+T+ +L F G VV RVC D L + +V F + A A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ- 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P L K P+ + R R + ++ N+D+ + + F
Sbjct: 96 ---ELNYIP---LYGK----PIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 145
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV++A ESA A+ +GM+L + + V P
Sbjct: 146 SF--GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 118 (46.6 bits), Expect = 0.00034, P = 0.00034
Identities = 45/192 (23%), Positives = 86/192 (44%)
Query: 108 RAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVE 162
R +R+ + +T VYV ++ ++ T++ L F G++ V D + F FV
Sbjct: 202 RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVN 261
Query: 163 FAD-EHGARAALNLGGTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDEREMC-SRTVY 217
F + + ARA +L G +Y R + + ++ + S +Y
Sbjct: 262 FENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLY 321
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CS 275
N+D + ++K+ F G VT +++ D +++ FV FA E A A++ S
Sbjct: 322 VKNLDPSISDEKLKEIFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 276 GMVLGSQPIRVS 287
G ++ S+P+ V+
Sbjct: 380 GKMIESKPLYVA 391
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 130 (50.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 37 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 95
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 96 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 142
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 143 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 200
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 201 EPITVKFANNP 211
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 131 (51.2 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 55/208 (26%), Positives = 91/208 (43%)
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLR--FAF 160
G R Q E TV+V D+ ++T+ L F + V +V D + + F
Sbjct: 161 GAGERRQAEGP-EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 161 VEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAI-LPVNPTFLPRSED---EREMCSRT 215
V FADE RA + G P+R P+ L + P ++ E + + T
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILAL 272
++ +D+ V + ++K F GE+ +++ R FV++A AE A+ L
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQF--GELVHVKIPA----GKRCGFVQYANRACAEQALSVL 333
Query: 273 NCSGMVLGSQPIRVSPSKTPVRPRVTRP 300
N G LG Q IR+S ++P + T+P
Sbjct: 334 N--GTQLGGQSIRLSWGRSPSNKQ-TQP 358
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 130 (50.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 39 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 98 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 144
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 145 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 203 EPITVKFANNP 213
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 130 (50.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 39 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 98 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 144
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 145 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 203 EPITVKFANNP 213
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 130 (50.8 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 44 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 103 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 149
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 150 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 207
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 208 EPITVKFANNP 218
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 130 (50.8 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 44 ATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 103 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 149
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 150 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 207
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 208 EPITVKFANNP 218
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 32 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 91 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 137
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 138 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 195
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 196 EPITVKFANNP 206
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 32 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 91 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 137
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 138 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 195
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 196 EPITVKFANNP 206
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 129 (50.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIN---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRNMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 120 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 130 (50.8 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 39 ATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 98 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 144
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 145 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 203 EPITVKFANNP 213
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 130 (50.8 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 39 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 98 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 144
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 145 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 203 EPITVKFANNP 213
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 130 (50.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 55 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 113
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 114 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 160
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 161 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 218
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 219 EPITVKFANNP 229
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 130 (50.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 43 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 101
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 102 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 148
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 149 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 206
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 207 EPITVKFANNP 217
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 130 (50.8 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 44 ATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 103 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 149
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 150 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 207
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 208 EPITVKFANNP 218
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 130 (50.8 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +DS + + V+ + QN+T+E LF S G++ C++ D + L + FV + D
Sbjct: 44 AATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K +
Sbjct: 103 KDAEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMT 149
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 150 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 207
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 208 EPITVKFANNP 218
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 128 (50.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV +
Sbjct: 22 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 80
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 81 DAERAIN---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRTMTQ 127
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 128 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 185
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 186 PITVKFAANP 195
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 112 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 171
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 172 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 227
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 228 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 285
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 286 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 314
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 115 (45.5 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV 264
D+ E+ SR+VY N+D K ++ +F++ CG V R+ +L D H +VEF
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CG-TVNRITILSDKTTGHPKGCCYVEFVN 151
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGM 302
ES I A+ + + ++++P +T + P R G+
Sbjct: 152 KESIINAMALNDSFFNERQLKITPKRTNL-PYYMRQGV 188
Score = 43 (20.2 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
+ FR E++ + T ++++ NIT G+ + G
Sbjct: 49 KRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIG 85
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 132 (51.5 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 50/189 (26%), Positives = 77/189 (40%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-DPHSVLRFAFVEFADEHGARAALNL 175
+T++ ++ I + F G+VVD R+ D S + +EFA A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
G +L VR+ + P N P + E SRT+Y + + E+K+
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSN--PGRKGEGSQ-SRTIYVRGFSSSLGEDEIKKELR 500
Query: 236 A---ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
+ CG EVTR+ + D F + AL SG +G I V S
Sbjct: 501 SHFSKCG-EVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIGGGNIHVEES--- 556
Query: 293 VRPRVTRPG 301
RPR + G
Sbjct: 557 -RPRDSDEG 564
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 134 (52.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 54/178 (30%), Positives = 81/178 (45%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
V +YV++ E + LFS+ G VVD R ++ RF +V+ A AL
Sbjct: 664 VDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL 723
Query: 174 NLGGTMLGY-YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L +L YP++V S P+ T PRS E R +Y TNID KV + +V+
Sbjct: 724 QLHKKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVET 775
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
FF G+V +R+ +V + A AL+ +G LG++ + V SK
Sbjct: 776 FFRDY--GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 53/187 (28%), Positives = 86/187 (45%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 143
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q E+
Sbjct: 144 KAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQKEL 190
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 191 EQLFSQY--GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPIT 248
Query: 286 VSPSKTP 292
V + P
Sbjct: 249 VKFANNP 255
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 56/189 (29%), Positives = 89/189 (47%)
Query: 112 EDSVRRTVYVSD-IDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHG 168
EDS +T + + + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 35 EDS--KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q
Sbjct: 93 AEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 56/189 (29%), Positives = 89/189 (47%)
Query: 112 EDSVRRTVYVSD-IDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHG 168
EDS +T + + + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 35 EDS--KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A A+N T+ G +R L +KT + V+ P S R+ +Y + + K + Q
Sbjct: 93 AEKAIN---TLNG---LR-LQTKT--IKVSYA-RPSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 71 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 130
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 131 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 186
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 187 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 244
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 245 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 273
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 50/187 (26%), Positives = 85/187 (45%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q E+
Sbjct: 95 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKEM 141
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 142 EQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 286 VSPSKTP 292
V + P
Sbjct: 200 VKFANNP 206
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 50/187 (26%), Positives = 85/187 (45%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q E+
Sbjct: 95 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKEM 141
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 142 EQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 286 VSPSKTP 292
V + P
Sbjct: 200 VKFANNP 206
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 50/187 (26%), Positives = 85/187 (45%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q E+
Sbjct: 95 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKEM 141
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 142 EQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 286 VSPSKTP 292
V + P
Sbjct: 200 VKFANNP 206
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 50/187 (26%), Positives = 85/187 (45%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q E+
Sbjct: 95 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKEM 141
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 142 EQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 286 VSPSKTP 292
V + P
Sbjct: 200 VKFANNP 206
>WB|WBGene00004704 [details] [associations]
symbol:rsp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040017
"positive regulation of locomotion" evidence=IMP] [GO:0019915
"lipid storage" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0002119 GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0040017 GO:GO:0003723 GO:GO:0019915
GO:GO:0000398 EMBL:Z36948 GeneTree:ENSGT00700000104035 EMBL:Z49911
PIR:T20382 RefSeq:NP_741039.1 RefSeq:NP_741040.1
ProteinModelPortal:O01159 SMR:O01159 STRING:O01159 PaxDb:O01159
PRIDE:O01159 EnsemblMetazoa:D2089.1a GeneID:174646
KEGG:cel:CELE_D2089.1 UCSC:D2089.1b.1 CTD:174646 WormBase:D2089.1a
WormBase:D2089.1b eggNOG:NOG277302 InParanoid:O01159 KO:K13165
OMA:CAYAYVE NextBio:884894 Uniprot:O01159
Length = 452
Score = 91 (37.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 33/106 (31%), Positives = 46/106 (43%)
Query: 195 LPVNPTFLPRSEDER--EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL-GDH 251
LP P LP D E RTVY N+ K V EV + F G EV R+ G
Sbjct: 143 LPAYPP-LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFG-EVMYARMASGPD 200
Query: 252 VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV-RPR 296
A+VEF+ S AL G +P+++ S+ + +P+
Sbjct: 201 ALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKPQ 246
Score = 81 (33.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/90 (23%), Positives = 48/90 (53%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC---GD--PHSVLRFAFVEFADEHGARA 171
+ ++V++I + T + + +F+ G++ D +V G+ +++L+ AF++F DE
Sbjct: 10 KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEV 69
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
A +L T++ + LP ++P +F
Sbjct: 70 AQHLTNTVVIDCAIVCLPYPNPVIPDEESF 99
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 50/199 (25%), Positives = 89/199 (44%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
L +A+V F D R A+ L Y P+ K + + + R R+ S
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPI-----KGRLCRI--MWSQRDPSLRKKGSG 126
Query: 215 TVYCTNIDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAI 269
++ N+ P + K ++ + G++ ++ D ++ FV F A+ AI
Sbjct: 127 NIFIKNLH---PDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 270 LALNCSGMVLGSQPIRVSP 288
ALN GM+L Q I V+P
Sbjct: 184 DALN--GMLLNGQEIYVAP 200
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 56/190 (29%), Positives = 89/190 (46%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIN---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRSMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI N S+
Sbjct: 120 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T+E L LFSS G+V ++ D HS L + FV +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A++ T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIS---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRTMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 120 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R+D R + V+ + QN+T+E L LFSS G+V ++ D HS L + FV +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A++ T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIS---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRTMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 120 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 117 (46.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 191 KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD 250
K A+ P +E++ + +R+VY N+D K +E+++ F A CG +V R+ + D
Sbjct: 23 KQALSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHF-AVCG-KVARVTIPKD 80
Query: 251 HV--HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGM 302
+ AFVEF ES LAL SG + ++ I V+ +T +PGM
Sbjct: 81 KFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRT------NKPGM 128
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 50/188 (26%), Positives = 85/188 (45%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q ++
Sbjct: 94 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKDM 140
Query: 231 KQFFEAACGGEVTRLRLLGDHVH---STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 EQLFSQY--GRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 125 (49.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 53/205 (25%), Positives = 90/205 (43%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEF 163
A + QR ++ VYV I + E+ + F+ G + + D ++ FAFVE+
Sbjct: 100 AAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY 159
Query: 164 ADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
A+ AL + MLG ++V PS I P +E+ R +Y ++
Sbjct: 160 EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIYVASV 215
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCSGMV- 278
+ + ++K FEA G++ L D F+E+ A+S+ A++ +
Sbjct: 216 HQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD 273
Query: 279 LGSQPIRVSPSKTPVRPRVT--RPG 301
LG Q +RV + TP P +T PG
Sbjct: 274 LGGQYLRVGKAVTPPMPLLTPATPG 298
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 37/112 (33%), Positives = 55/112 (49%)
Query: 183 YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV 242
YPV V PS A PV P D C+ T+ N+D+ V + E+K+ F GEV
Sbjct: 211 YPVTV-PSAVAA-PVQAYVAPPESDVT--CT-TISVANLDQNVTEEELKKAFSQL--GEV 263
Query: 243 TRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292
++ + +T+ +V+F SA A+ G V+G Q +R+S SK P
Sbjct: 264 IYVK-----IPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 66 (28.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-----GDPHSVLRFAFVEFADEHGARA 171
RT+++ D+ + E L FS G++V +V G P + F+EF A
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG---YGFIEFISHAAAER 80
Query: 172 ALNL-GGTML 180
L GT +
Sbjct: 81 TLQTYNGTQM 90
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 77 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 136
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 137 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 192
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 193 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 250
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 251 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 279
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 85 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 144
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 145 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 200
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 201 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 259 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 287
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 85 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 144
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 145 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 200
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 201 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 259 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 287
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 105 (42.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLR-FAFVEFADEHGA-RAALN 174
+VYV + TEE L FSS GQ+ + R VC R FAF+EFA+E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 175 LGGTMLGYYPVRV 187
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 114 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 173
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 174 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 229
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 230 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 288 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 316
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 115 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 174
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 175 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 230
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 231 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 288
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 289 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 317
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 119 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 178
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 179 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 234
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 235 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 293 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 321
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 119 LQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 178
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 179 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 234
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + + ++K FEA G++ L D F+E+ A+S+ A++
Sbjct: 235 VASVHQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 293 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 321
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 56/190 (29%), Positives = 89/190 (46%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV +
Sbjct: 14 RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 72
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 73 DAERAIN---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRTMTQ 119
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 120 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 177
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 178 PITVKFAANP 187
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 41/176 (23%), Positives = 85/176 (48%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLG 176
+YV ++ ++ E+RL LFS G+++ +V D R F FV F E +A +N+
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAEVKQ 232
G + + V ++ + N + +++ +R +Y N+D + ++++
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + HS FV F+ E A A+ +G ++G++P+ V+
Sbjct: 313 EFSPY--GVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 51/200 (25%), Positives = 91/200 (45%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTN 220
V F + H AA N TM G +L + + F R E E E+ +R + TN
Sbjct: 143 VHF-ETH--EAAQNAISTMNGM----LLNDRKVFVG---HFKSRREREVELGARAMEFTN 192
Query: 221 IDKK-----VPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-N 273
I K V + ++ F G++ ++++ D HS FV F E A A+ N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQF--GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 274 CSGMVLGSQPIRVSPSKTPV 293
+G + + + V ++ V
Sbjct: 251 MNGREVSGRLLYVGRAQKRV 270
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 125 (49.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 53/205 (25%), Positives = 90/205 (43%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEF 163
A + QR ++ VYV I + E+ + F+ G + + D ++ FAFVE+
Sbjct: 10 AAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY 69
Query: 164 ADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
A+ AL + MLG ++V PS I P +E+ R +Y ++
Sbjct: 70 EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIYVASV 125
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCSGMV- 278
+ + ++K FEA G++ L D F+E+ A+S+ A++ +
Sbjct: 126 HQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD 183
Query: 279 LGSQPIRVSPSKTPVRPRVT--RPG 301
LG Q +RV + TP P +T PG
Sbjct: 184 LGGQYLRVGKAVTPPMPLLTPATPG 208
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 56/190 (29%), Positives = 89/190 (46%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEH 167
R D R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV +
Sbjct: 41 RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAK 99
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N T+ G +R L SKT + V+ P SE ++ +Y + + + + Q
Sbjct: 100 DAERAIN---TLNG---LR-LQSKT--IKVSYA-RPSSEVIKDA---NLYISGLPRTMTQ 146
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
+V+ F G + R+L D S +AF+ F + AE AI + N S+
Sbjct: 147 KDVEDMFSRF--GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 204
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 205 PITVKFAANP 214
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 122 (48.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 52/193 (26%), Positives = 88/193 (45%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL M G R + K + VN P S+ + V+ ++ ++ ++K
Sbjct: 62 AL---AAMNG----RKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 112
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRV 286
F A G ++ R++ D S FV F AE+AI + G LG + IR
Sbjct: 113 AAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 287 S-PSKTPVRPRVT 298
+ ++ P P+ T
Sbjct: 169 NWATRKPPAPKST 181
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 46/178 (25%), Positives = 82/178 (46%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ +P+ R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A++ +GM+L + + V K+
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 47/178 (26%), Positives = 83/178 (46%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H
Sbjct: 77 LKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG 136
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
F FV F A+ A+N TM G +L + + F R E E E+ +R
Sbjct: 137 SRGFGFVHFETHEAAQQAIN---TMNGM----LLNDRKVFVG---HFKSRREREAELGAR 186
Query: 215 TVYCTNID-KKVPQAEVKQFFEAACG--GEVTRLRLLGDHV-HSTRIAFVEFAVAESA 268
+ TNI K +P +Q + G++ ++++ D+ HS FV F E A
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 43/178 (24%), Positives = 76/178 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ML P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
G + ++ D S FV F E+A A+N +GM+L + + V K+
Sbjct: 120 STF--GNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 128 (50.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 49/183 (26%), Positives = 85/183 (46%)
Query: 118 TVYVSDIDQNIT--EERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
TV+VS++ N+T E +L LF SCG+V R R + +VEF DE A AL
Sbjct: 589 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALG 648
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ ++ P+ V P NP F + R E ++ + + + E++
Sbjct: 649 MDRKVVEGRPMFVSPCVDK--NKNPDFKVFRYSTTLE--KHKLFISGLPFSCTKEELEDI 704
Query: 234 FEAACGGEVTRLRLLGDHVHSTR-IAFVEFA-VAESAILALNCSGMVLGSQPIRVSPSKT 291
+A G V +RL+ + + +A+VE+ A+++ L G+ + I+V+ S
Sbjct: 705 CKAH--GNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMDGLTIKEHVIKVAISNP 762
Query: 292 PVR 294
P+R
Sbjct: 763 PLR 765
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 61/204 (29%), Positives = 93/204 (45%)
Query: 112 EDSVRRTVYVSDIDQNITEE--RLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
+DSV TV+VS++ +I E +L LF +CG+VV R R + +VEF +E
Sbjct: 699 KDSV--TVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKS 756
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQ 227
A+ AL+L + P+ V P NP F + R E ++ + + P
Sbjct: 757 AQQALDLDRKNVEGRPMFVSPCVDK--SKNPDFKMFRYSTTLE--KHKLFISGL----PF 808
Query: 228 AEVKQFFEAACG--GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LNCSGMVLGSQP 283
+ K+ E C G V LRL+ + + +A+VE+ A A L GM +
Sbjct: 809 SCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVLKMDGMTIKENV 868
Query: 284 IRVSPS-----KTPVRPRV-TRPG 301
I+V+ S K P +P V T PG
Sbjct: 869 IKVAISNPPQRKVPEKPEVRTAPG 892
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 48/175 (27%), Positives = 75/175 (42%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-DPHSVLRFAFVEFADEHGARAALNLGG 177
V+V + +TE L FS CG + + ++ +P V AF+ FADE G A+ G
Sbjct: 78 VFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRVA--AFITFADEKGRDTAITYNG 135
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
+ L +N S+ E E T+ C NI V + VK+FF +
Sbjct: 136 KDF---------NGQGSLRINGANSKPSDGEGE--PTTIVCRNIAFTVDETLVKEFF-SK 183
Query: 238 CGGEVTRLRL--LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
CG ++R+ L D AFV F ++ A+ +G + I+V S+
Sbjct: 184 CGS-ISRVSLPVYEDSGRLKGFAFVSFDSEDAVEKAIALTGTKFEGREIQVERSQ 237
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 128 (50.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 49/183 (26%), Positives = 85/183 (46%)
Query: 118 TVYVSDIDQNIT--EERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
TV+VS++ N+T E +L LF SCG+V R R + +VEF DE A AL
Sbjct: 599 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALG 658
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ ++ P+ V P NP F + R E ++ + + + E++
Sbjct: 659 MDRKVVEGRPMFVSPCVDK--NKNPDFKVFRYSTTLE--KHKLFISGLPFSCTKEELEDI 714
Query: 234 FEAACGGEVTRLRLLGDHVHSTR-IAFVEFA-VAESAILALNCSGMVLGSQPIRVSPSKT 291
+A G V +RL+ + + +A+VE+ A+++ L G+ + I+V+ S
Sbjct: 715 CKAH--GNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMDGLTIKEHVIKVAISNP 772
Query: 292 PVR 294
P+R
Sbjct: 773 PLR 775
>TAIR|locus:2028205 [details] [associations]
symbol:AT1G45100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00546918 RefSeq:NP_175125.1 UniGene:At.52038
ProteinModelPortal:F4HPM6 SMR:F4HPM6 PRIDE:F4HPM6
EnsemblPlants:AT1G45100.1 GeneID:841077 KEGG:ath:AT1G45100
OMA:SAYGANK ArrayExpress:F4HPM6 Uniprot:F4HPM6
Length = 497
Score = 125 (49.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 52/187 (27%), Positives = 80/187 (42%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLRFAFVEFADEHGARA 171
D V V VS++ + G F+ QVV R V + + FVEFA +GA
Sbjct: 154 DFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANK 213
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL G L + + ++ + P F E ++T++ N+ + +++
Sbjct: 214 ALEEKNGEYLHNHKILLMKGHES-----PGFA-----EEAAITKTLFVANLRDSIQISDI 263
Query: 231 KQFFEAACGGEVTRLRLL-GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
FF+ GEV +RL+ FVEFA A A AL +G L + I + +
Sbjct: 264 INFFKDV--GEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVKNGEYLHNYKISLDGA 321
Query: 290 KT-PVRP 295
KT P RP
Sbjct: 322 KTAPHRP 328
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 49/187 (26%), Positives = 84/187 (44%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q E+
Sbjct: 95 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKEM 141
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 142 EQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 286 VSPSKTP 292
V + P
Sbjct: 200 VKFANNP 206
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 49/187 (26%), Positives = 84/187 (44%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+N T+ G L +T + V+ P S R+ +Y + + K + Q E+
Sbjct: 95 KAIN---TLNG------LKLQTKTIKVSYA-RPSSASIRDA---NLYVSGLPKTMSQKEM 141
Query: 231 KQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
+Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 142 EQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 286 VSPSKTP 292
V + P
Sbjct: 200 VKFANNP 206
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 51/194 (26%), Positives = 91/194 (46%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+D RT+YV ++ +++TE + LFS G C++ + S + FVEF + A A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL M G ++L + + VN P S+ + V+ ++ ++ ++K
Sbjct: 64 AL---AAMNGR---KILGKE---VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 114
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
F A G+++ R++ D S FV F AE+AI+ + G LG + IR
Sbjct: 115 SAF--APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG--GQWLGGRQIRT 170
Query: 287 S-PSKTPVRPRVTR 299
+ ++ P P+ T+
Sbjct: 171 NWATRKPPAPKSTQ 184
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 51/194 (26%), Positives = 91/194 (46%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+D RT+YV ++ +++TE + LFS G C++ + S + FVEF + A A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL M G ++L + + VN P S+ + V+ ++ ++ ++K
Sbjct: 64 AL---AAMNGR---KILGKE---VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 114
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
F A G+++ R++ D S FV F AE+AI+ + G LG + IR
Sbjct: 115 SAF--APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG--GQWLGGRQIRT 170
Query: 287 S-PSKTPVRPRVTR 299
+ ++ P P+ T+
Sbjct: 171 NWATRKPPAPKSTQ 184
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 126 (49.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 46/178 (25%), Positives = 81/178 (45%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ +P+ R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 50/207 (24%), Positives = 91/207 (43%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A A+ + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAES 267
R VY N + + ++K F G +R++ D +R FV F E
Sbjct: 186 RAKEFTNVYIKNFGEDMDDDKLKDIFSKY--GNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 268 AILALN-CSGMVLGSQPIRVSPSKTPV 293
A A++ +G + + I V ++ V
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKV 270
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 55/209 (26%), Positives = 89/209 (42%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 78 LQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFA 137
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FVE+ A+ AL + MLG ++V PS I P +E+ R +Y
Sbjct: 138 FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIY 193
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCS 275
++ + ++K FEA G + L D F+E+ A+SA A++
Sbjct: 194 VASVHPDLSDDDIKSVFEAF--GRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSM 251
Query: 276 GMV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 252 NLFDLGGQYLRVGKAVTPPMPLLTPATPG 280
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 125 (49.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 53/205 (25%), Positives = 90/205 (43%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEF 163
A + QR ++ VYV I + E+ + F+ G + + D ++ FAFVE+
Sbjct: 102 AAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY 161
Query: 164 ADEHGARAALN-LGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
A+ AL + MLG ++V PS I P +E+ R +Y ++
Sbjct: 162 EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIYVASV 217
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCSGMV- 278
+ + ++K FEA G++ L D F+E+ A+S+ A++ +
Sbjct: 218 HQDLSDDDIKSVFEAF--GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD 275
Query: 279 LGSQPIRVSPSKTPVRPRVT--RPG 301
LG Q +RV + TP P +T PG
Sbjct: 276 LGGQYLRVGKAVTPPMPLLTPATPG 300
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 46/176 (26%), Positives = 81/176 (46%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+D +T+ +L F+ GQVV RVC D L + +V +A A ALN
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L +RV+ S +P+ R+ ++ N+DK + + + F
Sbjct: 106 LNFMALNGRAIRVMYSVR-----DPSL-------RKSGVGNIFIKNLDKSIDHKALHETF 153
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ D ++ FV++ E+A A++ +GM+L + + V P
Sbjct: 154 SAF--GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 122 (48.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 52/193 (26%), Positives = 88/193 (45%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL M G R + K + VN P S+ + V+ ++ ++ ++K
Sbjct: 62 AL---AAMNG----RKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 112
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRV 286
F A G ++ R++ D S FV F AE+AI + G LG + IR
Sbjct: 113 AAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 287 S-PSKTPVRPRVT 298
+ ++ P P+ T
Sbjct: 169 NWATRKPPAPKST 181
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 127 (49.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 58/202 (28%), Positives = 92/202 (45%)
Query: 112 EDSVRRTVYVSDIDQNITEE--RLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
+DSV TV+VS++ +I E +L LF CG+VV R R + +VEF +E
Sbjct: 701 KDSV--TVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKS 758
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQ 227
A+ AL L ++ P+ V P NP F + R E ++ + + +
Sbjct: 759 AQQALELDRKIVEGRPMFVSPCVDK--SKNPDFKVFRYSTTLE--KHKLFISGLPFSCTK 814
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LNCSGMVLGSQPIR 285
E++ +A G V LRL+ + + +A+VE+ A A + GM + I+
Sbjct: 815 EELEDICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIK 872
Query: 286 VSPS-----KTPVRPRV-TRPG 301
V+ S K P +P V T PG
Sbjct: 873 VAISNPPQRKVPEKPEVRTAPG 894
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 116 (45.9 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAE 229
AL + G + V+V + T T +R V+ ++ ++ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+K F A G ++ R++ D S FV F AE+AI + G LG + I
Sbjct: 122 IKAAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 285 RVS-PSKTPVRPRVT 298
R + ++ P P+ T
Sbjct: 178 RTNWATRKPPAPKST 192
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 45/181 (24%), Positives = 84/181 (46%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
+ ++YV D+ ++E+ L +F+ G V + RVC D ++ L +A+V + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L P+R K + + R R+ V+ N+DK + +
Sbjct: 68 LDT----LNNTPIR---GKACRI----MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYD 116
Query: 233 FFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
F A G + +++ D +S++ FV + ESA A+ +GM++ Q + V P K
Sbjct: 117 TFSAF--GNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFK 174
Query: 291 T 291
+
Sbjct: 175 S 175
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 123 (48.4 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 47/178 (26%), Positives = 83/178 (46%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H
Sbjct: 77 LKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG 136
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
F FV F A+ A+N TM G +L + + F R E E E+ +R
Sbjct: 137 SRGFGFVHFETHEAAQQAIN---TMNGM----LLNDRKVFVG---HFKSRREREAELGAR 186
Query: 215 TVYCTNID-KKVPQAEVKQFFEAACG--GEVTRLRLLGDHV-HSTRIAFVEFAVAESA 268
+ TNI K +P +Q + G++ ++++ D+ HS FV F E A
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 41/176 (23%), Positives = 79/176 (44%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLG 176
+YV ++ ++ E+ L LFS G+++ +V D R F FV F E +A +++
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDE-REMCSRTVYCTNIDKKVPQAEVKQ 232
G + Y R + F +D R +Y N+D + ++++
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + HS FV F+ E A A+ +G ++G++P+ V+
Sbjct: 313 EFSPY--GVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00094
Identities = 43/178 (24%), Positives = 76/178 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ML P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
G + ++ D S FV F E+A A+N +GM+L + + V K+
Sbjct: 120 STF--GNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 99 (39.9 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 27 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 86
Query: 161 VEFADEHGARAALN-LGGTML 180
V F + A A+ + G +L
Sbjct: 87 VHFETQEAADKAIEKMNGMLL 107
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 122 (48.0 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 44/186 (23%), Positives = 81/186 (43%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 176 GGTMLGYYPVRVL------PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
G LG +R P+ A + P ++ + TVYC I+ +
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 217
Query: 230 VKQFFEAACG--GEVTRLRLLGDHVHSTRIAFVEFAVAESA---ILALNCSGMVLGSQPI 284
++ + G + +R+ D + AFV F+ E+A I+A+N + QP+
Sbjct: 218 NEEILQKTFSPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAIVAVN--NTEINQQPV 271
Query: 285 RVSPSK 290
+ + K
Sbjct: 272 KCAWGK 277
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 48/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F ++A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
Identities = 44/177 (24%), Positives = 81/177 (45%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
VY+ + ++ +ERL LFS G+ + +V DP + F FV F A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSED-EREMCSR----TVYCTNIDKKVPQAEVK 231
G + V V ++ + R E ++E SR +Y N+D + +++
Sbjct: 253 GKDINGKMVFVGRAQKKV-ERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+ F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 312 KEFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 123 (48.4 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ +ITE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 71
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K P+ + R R+ V+ N+DK + + F
Sbjct: 72 --TM----NFDVVKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 121
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F ++A A+ +GM+L + + V K+
Sbjct: 122 AF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 176
Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
Identities = 44/178 (24%), Positives = 82/178 (46%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
VY+ + ++ ++RL LF G+ + +V DP R F FV + A A+ +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE--REMCSR----TVYCTNIDKKVPQAEV 230
GT L V V ++ + L R ++ +E SR +Y N+D + ++
Sbjct: 254 GTELNGKTVFVGRAQKKM--ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
++ F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 312 RKEFSPF--GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 367
Score = 115 (45.5 bits), Expect = 0.00076, P = 0.00076
Identities = 48/194 (24%), Positives = 86/194 (44%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 84 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 143
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E EM ++
Sbjct: 144 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGAKAKEFT 192
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + +K+ F+ G+ ++++ D +R FV + E A A+
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKY--GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVE 250
Query: 274 -CSGMVLGSQPIRV 286
+G L + + V
Sbjct: 251 EMNGTELNGKTVFV 264
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 45/177 (25%), Positives = 78/177 (44%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS GQ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM Y V+ + P+ + R R+ ++ N+D+ + + F
Sbjct: 71 --TM-NY---EVIKGR----PIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKS 175
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 51/193 (26%), Positives = 88/193 (45%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAS 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL M G R + K + VN P S+ + V+ ++ ++ ++K
Sbjct: 62 AL---AAMNG----RKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 112
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRV 286
F A G ++ R++ D S FV F AE+AI + G LG + IR
Sbjct: 113 AAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 287 S-PSKTPVRPRVT 298
+ ++ P P+ T
Sbjct: 169 NWATRKPPAPKST 181
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 47/177 (26%), Positives = 77/177 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A++ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 49/200 (24%), Positives = 89/200 (44%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A++ + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN- 273
VY N + + +K++F G ++ + DH S FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 274 CSGMVLGSQPIRVSPSKTPV 293
+G L + I V ++ V
Sbjct: 251 MNGKDLNGKAIFVGRAQKKV 270
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 43/173 (24%), Positives = 78/173 (45%)
Query: 110 QREDSVRR-TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-----LRFAFVEF 163
+ E+S+ T+++ +++ + TEE L G+FS G V C + + + F FVE+
Sbjct: 727 EEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEY 786
Query: 164 ADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A+ AL L G ++ + + V S+ A P PT + + R+ + + NI
Sbjct: 787 KKPEQAQKALKQLQGHVVDGHKLEVRISERATKPA-PTATRKKQVARKQTTSKILVRNIP 845
Query: 223 KKVPQAEVKQFFEAACGGEVTRL--RLLGDHVHSTRIAFVEFAVAESAILALN 273
+ E+++ F + RL ++ G H FV+F + A A N
Sbjct: 846 FQADSREIRELFSTFGELKTVRLPKKMTGTGTHRG-FGFVDFFTKQDAKRAFN 897
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 105 RAFRAQREDSV-RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFV 161
R A+ + + +R+VYV ++D T + L FSSCG + + D S +A++
Sbjct: 80 RPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYI 139
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
EFA+ + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 48/178 (26%), Positives = 85/178 (47%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA-RAALNL 175
+ V+ +I+ TEE + LFS G + ++ P+ + AF+ FAD + A +A NL
Sbjct: 177 KIVWAGNINPESTEEEVRHLFSQFGYLQAIKII--PNK--QCAFITFADVNCAIQAQFNL 232
Query: 176 GGTMLGYYPVRVLPSKTAILP-VN---PTFLPRSEDEREMC-SRTVYCTNIDKKVPQAEV 230
GT+ P+++ K P N F ++ +E ++ ++ N++ V +
Sbjct: 233 NGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELL 292
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
KQ F+ G V +R+L H AFV F ESA A N +G ++ P++++
Sbjct: 293 KQIFDQF--GNVDTIRIL----HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPLKIN 344
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 45/165 (27%), Positives = 79/165 (47%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
E+S +RTV+VS + QNI E+ L+ LFS G V++ R+ D + + +VEF+ +
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+ L G++L + V +I P S SR +Y I V + +
Sbjct: 321 DKAIALSGSVLDGQQILV----HSIQPEKKVIKSNSTGSSGGESR-IYVGYIHLSVAEEQ 375
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHS--TRIAFVEFAVAESAILAL 272
++ F+ G++ + + H ++ AF++F ESA A+
Sbjct: 376 IRVIFQPY--GDIDFINI---HTKPGISKYAFIQFKTQESAKRAI 415
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 109 (43.4 bits), Expect = 0.00015, P = 0.00015
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 37 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 96
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++++ +R+VYV ++D T + L FSSCG + + D S +A++EFA+ +
Sbjct: 86 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 145
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ + T+ ++VLP +T + ++ T
Sbjct: 146 SVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 88 (36.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGG 177
+++ ++D+ L LF G VV+C V V + FV E R A+ NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 178 TMLGYYPVRVLPSKTAILPVNPT 200
L + ++V +K+ P PT
Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT 85
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN 273
++ N+ K EV++ F+ G V ++ ++ VH + V+ A+ E LN
Sbjct: 88 IFVGNLTDKTRAPEVRELFQKY--GTVVECDIVRNYGFVHLDCVGDVQDAIKE-----LN 140
Query: 274 CSGMVLGSQPIRVSPSKTPVRPRVTRPGM 302
G V+ QP++V S + VRP+ PGM
Sbjct: 141 --GRVVDGQPLKVQVSTSRVRPK---PGM 164
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 51/208 (24%), Positives = 89/208 (42%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FA 159
L A + QR ++ VYV I + E+ + F+ G + + D ++ FA
Sbjct: 71 LQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 130
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FVE+ A+ AL + MLG ++V +I P +E+ R +Y
Sbjct: 131 FVEYEVPEAAQLALEQMNSVMLGGRNIKV-GRPGSIGQAQPIIEQLAEEARAY--NRIYV 187
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCSG 276
+I + ++K FEA G++ L + F+E+ +S++ A++
Sbjct: 188 ASIHPDLSDDDIKSVFEAF--GKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMN 245
Query: 277 MV-LGSQPIRVSPSKTPVRPRVT--RPG 301
+ LG Q +RV + TP P +T PG
Sbjct: 246 LFDLGGQYLRVGKAVTPPMPLLTPTTPG 273
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
RT++V +++ +TEE L LF G V+ ++ D + FAFV F E A+NL
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 176 -GGTMLGYYPVRVLPSKTAILP 196
G L P+++ ++ ++P
Sbjct: 70 LNGIKLYGRPIKI-QFRSVVMP 90
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF--ADEHGARAALN 174
++Y++++D ++EE L +FS G+V+ + D R FAF+EF AD G RA L+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAG-RAMLH 76
Query: 175 LGGTMLG 181
+ G ++G
Sbjct: 77 MDGRLIG 83
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 37 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 96
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 116 (45.9 bits), Expect = 0.00022, P = 0.00022
Identities = 51/191 (26%), Positives = 86/191 (45%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT+YV ++ +++TE + +FS G C++ D + FVEF + A AAL
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAAL--- 65
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
M G R + K + VN P S+ + V+ ++ ++ +V+ F
Sbjct: 66 AAMNG----RKILGKD--MKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAF-- 117
Query: 237 ACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRVS-PSK 290
A G+++ R++ D S F+ F AESAI +N G LG + IR + ++
Sbjct: 118 APFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMN--GQWLGGRQIRTNWATR 175
Query: 291 TPVRPRVTRPG 301
P P+ G
Sbjct: 176 KPSAPKSNNEG 186
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 44/183 (24%), Positives = 81/183 (44%)
Query: 110 QREDSV-RRTVYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADE 166
+ ED V +YV I TE+ + F SCG + VDC++ + + AF+ F E
Sbjct: 153 KEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTE 212
Query: 167 HGARAALNLGGTMLG--YYPVR-VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
GA+ AL +G Y ++ + + T +P T + + + +R VY N+
Sbjct: 213 DGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNR-VYIGNLAW 271
Query: 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQP 283
+ ++++ F + C RL + A V+F + S +AL V+ +P
Sbjct: 272 DTTERDIRKLF-SDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRP 330
Query: 284 IRV 286
+++
Sbjct: 331 VKI 333
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
Identities = 45/178 (25%), Positives = 80/178 (44%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ +P+ R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Score = 114 (45.2 bits), Expect = 0.00098, P = 0.00098
Identities = 49/201 (24%), Positives = 89/201 (44%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F A A+ + G +L V V F R E E EM +
Sbjct: 137 SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAE 266
R VY N + + ++K+ F C G +R++ D ++ FV F E
Sbjct: 186 RAKEFTNVYIKNFGEDMDDEKLKEIF---CKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 267 SAILALN-CSGMVLGSQPIRV 286
A A++ +G + + + V
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYV 263
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAA 61
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAE 229
AL + G + V+V + T T +R V+ ++ ++ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+K F A G ++ R++ D S FV F AE+AI + G LG + I
Sbjct: 122 IKAAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 285 RVS-PSKTPVRPRVT 298
R + ++ P P+ T
Sbjct: 178 RTNWATRKPPAPKST 192
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 114 (45.2 bits), Expect = 0.00028, P = 0.00028
Identities = 25/93 (26%), Positives = 51/93 (54%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T + L F+ CG++ + D S +A++EFA E
Sbjct: 152 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATES 211
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 212 SAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 244
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAE 229
AL + G + V+V + T T +R V+ ++ ++ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+K F A G ++ R++ D S FV F AE+AI + G LG + I
Sbjct: 122 IKAAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 285 RVS-PSKTPVRPRVT 298
R + ++ P P+ T
Sbjct: 178 RTNWATRKPPAPKST 192
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAE 229
AL + G + V+V + T T +R V+ ++ ++ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+K F A G ++ R++ D S FV F AE+AI + G LG + I
Sbjct: 122 IKAAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 285 RVS-PSKTPVRPRVT 298
R + ++ P P+ T
Sbjct: 178 RTNWATRKPPAPKST 192
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAE 229
AL + G + V+V + T T +R V+ ++ ++ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+K F A G ++ R++ D S FV F AE+AI + G LG + I
Sbjct: 122 IKAAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 285 RVS-PSKTPVRPRVT 298
R + ++ P P+ T
Sbjct: 178 RTNWATRKPPAPKST 192
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAA 61
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAE 229
AL + G + V+V + T T +R V+ ++ ++ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
+K F A G ++ R++ D S FV F AE+AI + G LG + I
Sbjct: 122 IKAAF--APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 285 RVS-PSKTPVRPRVT 298
R + ++ P P+ T
Sbjct: 178 RTNWATRKPPAPKST 192
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 49/195 (25%), Positives = 87/195 (44%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+R+DS T++V D+ ++T+ L F +S V +V D + + FV F+DE
Sbjct: 148 KRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
Query: 167 -HGARAALNLGGTMLGYYPVRVLP--SKTAILPVNPTFLPRSED---EREMCSRTVYCTN 220
RA + G P+R+ P SK + ++ + + + + TV+
Sbjct: 208 SEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGG 267
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILALNCSGM 277
+D V +K F GE+ +++ R FV+F+ AE A+ LN G+
Sbjct: 268 LDASVTDDHLKNVFSQY--GEIVHVKIPA----GKRCGFVQFSEKSCAEEALRMLN--GV 319
Query: 278 VLGSQPIRVSPSKTP 292
LG +R+S ++P
Sbjct: 320 QLGGTTVRLSWGRSP 334
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 48/176 (27%), Positives = 84/176 (47%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT+YV ++D +TE+ +A LF+ G V +V D + +AFVEF+D A AL
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSND-PYAFVEFSDHGQASQALQ-- 102
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--VYCTNIDKKVPQAEVKQFF 234
TM R+L + + VN P + + +R V+ ++ +V ++++ F
Sbjct: 103 -TM----NKRLLLDRE--MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF 155
Query: 235 EAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+ G+V+ +++ D S FV + E A A+ +G LG + IR +
Sbjct: 156 QPF--GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTN 209
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 32/129 (24%), Positives = 56/129 (43%)
Query: 74 ADDNKQSAIDXXXXXXXXXXXXXQGR--KRLSGRAFRAQREDSVR----RTVYVSDIDQN 127
AD+N S + Q + K L A+ E+ + ++V++ ++D N
Sbjct: 6 ADNNSNSHFEMEIEAESAILQQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFN 65
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNLGGTMLGYYPV 185
T E + F CGQ+V + D + + FA++EF D AL + G++ P+
Sbjct: 66 STIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPI 125
Query: 186 RVLPSKTAI 194
V +T I
Sbjct: 126 VVTAKRTNI 134
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 51/201 (25%), Positives = 88/201 (43%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+RR+ V++ ++++ I + L FS+ G ++ C+V D + F
Sbjct: 83 RIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F E A A+ + G +L V V F R E E E+ +RT
Sbjct: 143 VHFETEEAAERAIEKMNGMLLNDRKVFV-----------GQFKSRKEREAELGTRTKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N ++ + F G+V ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRF--GQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 274 -CSGMVLGSQPIRVSPSKTPV 293
+G L + I V P++ V
Sbjct: 250 EMNGKELNGKHIYVGPAQKKV 270
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 110 (43.8 bits), Expect = 0.00038, P = 0.00038
Identities = 44/191 (23%), Positives = 84/191 (43%)
Query: 105 RAFRAQREDSVRRT-VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVE 162
RA + D T V+V +I +I +E+L LF G +V D + F FV
Sbjct: 22 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 81
Query: 163 FADEHGA-RAALNLGGTMLG---YYPVRVLPSKTAILPVNPTFLP-RSEDEREMCSRTVY 217
+ A +A L+L G + Y R + + F R +++ +Y
Sbjct: 82 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 141
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSG 276
N+D+ + ++K+ F + G ++R +++ + V F+ E A A++ +G
Sbjct: 142 IKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 277 MVLGSQPIRVS 287
++GS+P+ V+
Sbjct: 200 RIVGSKPLHVT 210
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 53/207 (25%), Positives = 91/207 (43%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEE--RLAGLFSSCGQVVDCRVCGDPHSVLR 157
KR + +DS+ TV+VS++ ++ E +L LF +CG+VV R R
Sbjct: 653 KRDMPKVLHDSSKDSI--TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFR 710
Query: 158 -FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRT 215
+ +VEF +E A AL + + P+ V P NP F + R E
Sbjct: 711 GYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDK--SKNPDFKVFRYSTSLE--KHK 766
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LN 273
++ + + + E+++ +A G V LRL+ + + +A+VE+ A A +
Sbjct: 767 LFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 824
Query: 274 CSGMVLGSQPIRVSPSKTPVRPRVTRP 300
GM + I+V+ S P R +P
Sbjct: 825 MDGMTIKENIIKVAISNPPQRKVPEKP 851
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 41/198 (20%), Positives = 86/198 (43%)
Query: 98 GR-KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
GR K R + + S VY+ + ++ +ERL +FS G+ + +V D
Sbjct: 170 GRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS 229
Query: 157 R-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI---LPVNPTFLPRSEDEREM 211
+ F FV F A+ A+ + G + + V ++ + + F +
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRG 289
Query: 212 CSRT-VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
C +Y N+D + +++ F + G ++R++++ + S + F+ E A
Sbjct: 290 CQGVKLYIKNLDDTIDDEKLRNEFSSF--GSISRVKVMQEEGQSKGFGLICFSSPEDATK 347
Query: 271 ALN-CSGMVLGSQPIRVS 287
A+ +G +LGS+P+ ++
Sbjct: 348 AMTEMNGRILGSKPLSIA 365
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 112 (44.5 bits), Expect = 0.00044, P = 0.00044
Identities = 50/188 (26%), Positives = 85/188 (45%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
+T+YV ++ +++TE + LFS G +C++ D + FVEF + A AAL
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAAL--- 59
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
M G R + K + VN P S+ + V+ ++ ++ ++K F
Sbjct: 60 AAMNG----RKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-- 111
Query: 237 ACGGEVTRLRLLGDHV--HSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRVS-PSK 290
A G ++ R++ D S FV F AE+AI + G LG + IR + ++
Sbjct: 112 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRTNWATR 169
Query: 291 TPVRPRVT 298
P P+ T
Sbjct: 170 KPPAPKST 177
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 45/186 (24%), Positives = 79/186 (42%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADE 166
A R + ++Y+ D+ ++TE L FS G ++ RVC D L +A++ F
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A AL+ TM V+ + P+ + R R+ V+ N+D +
Sbjct: 63 ADAERALD---TM----NFEVIKGR----PIRIMWSQRDPGLRKSGVGNVFIKNLDDSID 111
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIR 285
+ F A G++ +++ D S FV F E+A A+ +GM+L + +
Sbjct: 112 NKALYDTFSAF--GDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 286 VSPSKT 291
V K+
Sbjct: 170 VGHFKS 175
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
Identities = 47/177 (26%), Positives = 75/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ + TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ K PV + R R+ ++ N+DK + + F
Sbjct: 71 --TM----NFDVIKGK----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|Q15020 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 EMBL:AB020880 GO:GO:0043231
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 EMBL:AF387506 EMBL:D63879 EMBL:AK290209
EMBL:BC032601 EMBL:BC041638 EMBL:BC093784 EMBL:BC103706
EMBL:BC111983 IPI:IPI00006025 IPI:IPI00383381 IPI:IPI01022779
RefSeq:NP_055521.1 UniGene:Hs.584842 PDB:2DO4 PDBsum:2DO4
ProteinModelPortal:Q15020 SMR:Q15020 IntAct:Q15020
MINT:MINT-2867335 STRING:Q15020 PhosphoSite:Q15020 DMDM:74762140
PaxDb:Q15020 PeptideAtlas:Q15020 PRIDE:Q15020
Ensembl:ENST00000228284 Ensembl:ENST00000546611
Ensembl:ENST00000546728 GeneID:9733 KEGG:hsa:9733 UCSC:uc001tmy.1
UCSC:uc001tnb.3 CTD:9733 GeneCards:GC12M108915 HGNC:HGNC:16860
HPA:HPA044322 MIM:175900 MIM:611684 neXtProt:NX_Q15020
Orphanet:79152 PharmGKB:PA34948 HOGENOM:HOG000063708
HOVERGEN:HBG053888 InParanoid:Q15020 OMA:SQAVMKM OrthoDB:EOG4RXXZG
PhylomeDB:Q15020 ChiTaRS:SART3 EvolutionaryTrace:Q15020
GenomeRNAi:9733 NextBio:36616 ArrayExpress:Q15020 Bgee:Q15020
CleanEx:HS_SART3 Genevestigator:Q15020 GermOnline:ENSG00000075856
Uniprot:Q15020
Length = 963
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
Identities = 53/207 (25%), Positives = 91/207 (43%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEE--RLAGLFSSCGQVVDCRVCGDPHSVLR 157
KR + +DS+ TV+VS++ ++ E +L LF +CG+VV R R
Sbjct: 689 KRDMPKVLHDSSKDSI--TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFR 746
Query: 158 -FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRT 215
+ +VEF +E A AL + + P+ V P NP F + R E
Sbjct: 747 GYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDK--SKNPDFKVFRYSTSLE--KHK 802
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LN 273
++ + + + E+++ +A G V LRL+ + + +A+VE+ A A +
Sbjct: 803 LFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 860
Query: 274 CSGMVLGSQPIRVSPSKTPVRPRVTRP 300
GM + I+V+ S P R +P
Sbjct: 861 MDGMTIKENIIKVAISNPPQRKVPEKP 887
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 47/192 (24%), Positives = 88/192 (45%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + +++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TV 216
FV+F E A+AA++ L G ++ K + R+ DE R V
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMN--------DKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-C 274
Y N+ K++ + E+++ F G ++ ++ D ++R FV F E+A A+
Sbjct: 232 YVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 275 SGMVLGSQPIRV 286
+G+ LG + V
Sbjct: 290 NGISLGDDVLYV 301
Score = 115 (45.5 bits), Expect = 0.00080, P = 0.00080
Identities = 43/173 (24%), Positives = 76/173 (43%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-L 175
++Y D+D +TE L LF VV RVC D + L +A++ F++ + A A+ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
T L P+R++ S R R ++ N+D + + + F
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 236 AACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
+ G + ++ D S FV+F ESA A++ +GM++ + + V
Sbjct: 158 SF--GTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R+VYV ++D T L F+ CG++ + D S +A++EFA E
Sbjct: 155 EKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATES 214
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A+AA+ L ++ ++VLP +T ++ T
Sbjct: 215 SAQAAVELDNSVFRGRVIKVLPKRTNFPGISST 247
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 115 (45.5 bits), Expect = 0.00051, P = 0.00051
Identities = 51/205 (24%), Positives = 97/205 (47%)
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAF 160
G RA E + +R +YV +D +TE+ L +F + G V+ ++ D + + F
Sbjct: 78 GYVRRAAPEPN-KRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGF 136
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCT 219
VEF D A A+ T+ G R+ S+ + VN + + ++ + + ++
Sbjct: 137 VEFDDPGAAERAMQ---TLNGR---RIHQSE---IRVNWAYQSNTANKEDTSNHFHIFVG 187
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNC 274
++ +V + Q F A G V+ R++ D +R +AF E A AE A+ +++
Sbjct: 188 DLSNEVNDEVLLQAFSAF--GSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMD- 244
Query: 275 SGMVLGSQPIRVSPSKTPVRPRVTR 299
G LGS+ IR + + +P +++
Sbjct: 245 -GEWLGSRAIRCNWANQKGQPSISQ 268
>ASPGD|ASPL0000008076 [details] [associations]
symbol:AN6004 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 EMBL:AACD01000102 eggNOG:NOG67475
HOGENOM:HOG000163072 OrthoDB:EOG4C5GTR RefSeq:XP_663608.1
ProteinModelPortal:Q5B0C6 EnsemblFungi:CADANIAT00007014
GeneID:2871044 KEGG:ani:AN6004.2 OMA:HQLRANA Uniprot:Q5B0C6
Length = 270
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC---GDPHSVLRFAFVEFADEHGAR 170
S R TV+VS+ID + +E+ + FS CG++V V G+P S L+ A V F + A+
Sbjct: 2 SDRTTVHVSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGS-LKSATVTFEKDAAAK 60
Query: 171 AALNLGGTMLGYYPVRVLPSKT 192
AL L T LG V V ++T
Sbjct: 61 TALLLDQTQLGPSVVTVKAAQT 82
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 50/196 (25%), Positives = 85/196 (43%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+ R R R+ + E+ RRTV+VS + +T L F G V D ++ D S
Sbjct: 220 RSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 157 R--FAFVEFADEHGARAALNLGGTMLGYYPV--RVLPSKTAILPVNPTFLPRSEDEREMC 212
A+VEF E +AA+ L G L PV ++ ++ L R+ E+
Sbjct: 280 SKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASA-EIP 338
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA 271
+ +NI + +VK FE G++ + L D + ++ ++++ SA A
Sbjct: 339 FHRLCVSNIHFNLTDEDVKAIFEPF--GDIEFVHLQRDDQNRSKGFGYIQYRNPISARNA 396
Query: 272 LN-CSGMVLGSQPIRV 286
L +G L + +RV
Sbjct: 397 LEKMNGFDLAGRNMRV 412
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 92 (37.4 bits), Expect = 0.00056, P = 0.00056
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA-RAALN 174
+VYV ++ TEE + F++ G V + R+ D + FAFVEF++E GA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 175 LGGTMLGYYPVRV 187
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
Identities = 41/198 (20%), Positives = 86/198 (43%)
Query: 98 GR-KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
GR K R + + S VY+ + ++ +ERL +FS G+ + +V D
Sbjct: 228 GRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS 287
Query: 157 R-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI---LPVNPTFLPRSEDEREM 211
+ F FV F A+ A+ + G + + V ++ + + F +
Sbjct: 288 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRG 347
Query: 212 CSRT-VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
C +Y N+D + +++ F + G ++R++++ + S + F+ E A
Sbjct: 348 CQGVKLYIKNLDDTIDDEKLRNEFSSF--GSISRVKVMQEEGQSKGFGLICFSSPEDATK 405
Query: 271 ALN-CSGMVLGSQPIRVS 287
A+ +G +LGS+P+ ++
Sbjct: 406 AMTEMNGRILGSKPLSIA 423
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 116 (45.9 bits), Expect = 0.00059, P = 0.00059
Identities = 41/176 (23%), Positives = 78/176 (44%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLG 176
+YV ++ ++ E+ L LFS G+++ +V D R F FV F E +A +++
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAEVKQ 232
G + Y R + F +D +Y N+D + ++++
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + HS FV F+ E A A+ +G +LG++P+ V+
Sbjct: 313 EFSPY--GVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVA 366
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 117 (46.2 bits), Expect = 0.00075, P = 0.00075
Identities = 41/173 (23%), Positives = 78/173 (45%)
Query: 110 QREDSVRR-TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-----LRFAFVEF 163
+ E+S+ T+++ +++ + TEE L G+FS G + C + + + F FVE+
Sbjct: 714 EEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 773
Query: 164 ADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A+ AL L G + + + V S+ A P + + +++ S+ + NI
Sbjct: 774 KKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIP 832
Query: 223 KKVPQAEVKQFFEAACGGEVTRL--RLLGDHVHSTRIAFVEFAVAESAILALN 273
+ Q E+++ F + RL ++ G H FV+F + A A N
Sbjct: 833 FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG-FGFVDFITKQDAKKAFN 884
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 115 (45.5 bits), Expect = 0.00075, P = 0.00075
Identities = 46/177 (25%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D S L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ + PV + R R+ V+ N+D + + F
Sbjct: 71 --TM----NFEVIKGR----PVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKS 175
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00079
Identities = 47/189 (24%), Positives = 84/189 (44%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEH 167
+++ ++ +YV D+D ++TE+ L F G + R+C DP S L + +V F
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 168 GARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A ALN + ++ P R++ S+ P + R+ ++ N+DK +
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQ----P--------DDHLRKSGVGNIFIKNLDKSID 118
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQP 283
+ F A G + +++ D S A+V F A A AI +N G+ L ++
Sbjct: 119 NRALFYLFSAF--GNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN--GVRLNNRQ 174
Query: 284 IRVSPSKTP 292
+ V K P
Sbjct: 175 VYVGRFKFP 183
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 111 (44.1 bits), Expect = 0.00083, P = 0.00083
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEHGA 169
DS + + V+ + QN++++ L LFSS G+V ++ D HS L + FV + + + A
Sbjct: 31 DS-KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYLNPNDA 88
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A++ T+ G +R L SKT + ++ S D + +Y + + K + Q +
Sbjct: 89 ERAIS---TLNG---LR-LQSKT----IKVSYARPSSDSIK--DANLYISGLPKTMTQKD 135
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALN 273
V++ F G + R+L D S +AF+ F A AE AI LN
Sbjct: 136 VEEMFGRY--GRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLN 182
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
Identities = 45/178 (25%), Positives = 76/178 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+ +TE L FS G ++ R+C D L +A+V + A+ AL
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L ++ PVR++ S+ +P+ R+ V+ N+ K + + F
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNVFIKNLGKTIDNKALYNIF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
A G + ++ D FV F ESA A++ +GM L + I V K+
Sbjct: 111 SAF--GNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKS 166
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
Identities = 45/178 (25%), Positives = 76/178 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+ +TE L FS G ++ R+C D L +A+V + A+ AL
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L ++ PVR++ S+ +P+ R+ V+ N+ K + + F
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNVFIKNLGKTIDNKALYNIF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
A G + ++ D FV F ESA A++ +GM L + I V K+
Sbjct: 111 SAF--GNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKS 166
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00093
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 134 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 193
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 194 SVRTSLALDESLFRGRQIKVIPKRT 218
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 111 (44.1 bits), Expect = 0.00096, P = 0.00096
Identities = 40/185 (21%), Positives = 82/185 (44%)
Query: 111 REDSVRRT-VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL-RFAFVEFADEHG 168
RE T VY+ + ++ +E L +FS GQ + +V D RF FV F
Sbjct: 183 REKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKA 242
Query: 169 ARAAL-NLGGTMLGYYPVRVLPSKTAI---LPVNPTFLPRSEDE-REMCSRTVYCTNIDK 223
A+ A+ ++ G + + V ++ + + F ++ R + +Y N+D
Sbjct: 243 AKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDD 302
Query: 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQ 282
+ +++ F G + R++++ + S + F E+A A+ +G +LGS+
Sbjct: 303 TIDDETLRKEFSVF--GSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSK 360
Query: 283 PIRVS 287
P+ ++
Sbjct: 361 PLNIA 365
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 114 (45.2 bits), Expect = 0.00097, P = 0.00097
Identities = 44/177 (24%), Positives = 76/177 (42%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
TM V+ + P+ + R R+ V+ N+D+ + + F
Sbjct: 71 --TM----NFEVIKGR----PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 121 AF--GNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 266 0.00094 114 3 11 22 0.44 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 182
No. of states in DFA: 587 (62 KB)
Total size of DFA: 183 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.89u 0.21s 22.10t Elapsed: 00:00:01
Total cpu time: 21.92u 0.21s 22.13t Elapsed: 00:00:01
Start: Sat May 11 03:25:41 2013 End: Sat May 11 03:25:42 2013
WARNINGS ISSUED: 1