BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022058
(303 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224056565|ref|XP_002298913.1| predicted protein [Populus trichocarpa]
gi|222846171|gb|EEE83718.1| predicted protein [Populus trichocarpa]
Length = 307
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/314 (77%), Positives = 267/314 (85%), Gaps = 18/314 (5%)
Query: 1 MAAVADMPGDAAAANNTNNNKNN--------NLETK-KSESEFTVQKLVDMFTKLNPLAK 51
MAAVA++ +AA A+N N + ETK SESEFTVQKLVDMFTKLNPLAK
Sbjct: 1 MAAVAEITSEAAVASNNTTTAANKNDNNNNLDSETKPTSESEFTVQKLVDMFTKLNPLAK 60
Query: 52 EFFPSYYHQHT--DHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRA 109
EFFPS Y ++ + HF NNFA KQSA DNF +R+RNNFNQGR++L+GRA+RA
Sbjct: 61 EFFPSSYSKNNPNELHF----NNFAVPVKQSANDNFP--KRKRNNFNQGRRKLNGRAYRA 114
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
Q+EDS+RRTVYVSDIDQ++TEERLAGLFS CGQVVDCRVCGDPHSVLRFAFVEFADE GA
Sbjct: 115 QQEDSIRRTVYVSDIDQHVTEERLAGLFSGCGQVVDCRVCGDPHSVLRFAFVEFADEQGA 174
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNIDKKV Q E
Sbjct: 175 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTVYCTNIDKKVSQVE 234
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
VK FFE+ C GEVTRLRLLGD VHSTRIAFVEFA+AESAI+ALNCSGM LGSQP+RVSPS
Sbjct: 235 VKNFFESIC-GEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMALGSQPVRVSPS 293
Query: 290 KTPVRPRVTRPGMH 303
KTPVRPRVTRP MH
Sbjct: 294 KTPVRPRVTRPAMH 307
>gi|358248658|ref|NP_001240174.1| uncharacterized protein LOC100779109 [Glycine max]
gi|255639113|gb|ACU19856.1| unknown [Glycine max]
Length = 296
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/308 (75%), Positives = 262/308 (85%), Gaps = 17/308 (5%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETK-KSESEFTVQKLVDMFTKLNPLAKEFFPSYYH 59
MAAVA++P DA N +++K K+ESEF+VQKLVDMFTKLNPLAKEFFPS Y
Sbjct: 1 MAAVAEIPADA-----------NKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYS 49
Query: 60 QHTDHHFSVINN----NFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV 115
+ DH F N F K SA +NF N+RRRRN+FNQGR+R+SGR+ +AQREDS+
Sbjct: 50 PNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSI 109
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RRTVYVS+IDQ++TEERLA LFSSCGQV+DCR+CGDPHSVLRFAFVEFADE+GAR ALNL
Sbjct: 110 RRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GGT+LGYYPVRVLPSKTAILPVNPTFLPRS+DEREMC+RT+YCTNIDKKV QAEVK FFE
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFE 229
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
+AC GEV RLRLLGD VHSTRIAFVEFA+AESAI+ALNCSGM+LG+QPIRVSPSKTPVRP
Sbjct: 230 SAC-GEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRP 288
Query: 296 RVTRPGMH 303
RV RP H
Sbjct: 289 RVPRPASH 296
>gi|224114547|ref|XP_002316790.1| predicted protein [Populus trichocarpa]
gi|222859855|gb|EEE97402.1| predicted protein [Populus trichocarpa]
Length = 308
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/275 (82%), Positives = 250/275 (90%), Gaps = 5/275 (1%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN 88
KSESEFTVQKLVDMFTKLNPLAKEFFPS Y+++ F + NNF NKQSA DNF
Sbjct: 39 KSESEFTVQKLVDMFTKLNPLAKEFFPSSYNKNNPKQFHI--NNFPVPNKQSANDNFP-- 94
Query: 89 RRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
+RRRN+FNQGR+RL+GRA+RAQREDS+RRTVYVSDIDQ++TEE+LAGLFS CGQVVDCR+
Sbjct: 95 KRRRNDFNQGRRRLNGRAYRAQREDSIRRTVYVSDIDQHVTEEQLAGLFSGCGQVVDCRI 154
Query: 149 CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE 208
CGDP SVLRFAFVEFA E GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP+SEDE
Sbjct: 155 CGDPRSVLRFAFVEFAVEQGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPQSEDE 214
Query: 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
REMC+RTVYCTNI+KKV QAEVK FFE+ C GEVTRLRLLGDHVHSTRIAFVEFA+AESA
Sbjct: 215 REMCTRTVYCTNIEKKVSQAEVKNFFESIC-GEVTRLRLLGDHVHSTRIAFVEFAMAESA 273
Query: 269 ILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
I+ALNCSGMVLGSQP+RVSPSKTPVRPRVTR +H
Sbjct: 274 IVALNCSGMVLGSQPVRVSPSKTPVRPRVTRLALH 308
>gi|356556922|ref|XP_003546769.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 296
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/308 (75%), Positives = 265/308 (86%), Gaps = 17/308 (5%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETK-KSESEFTVQKLVDMFTKLNPLAKEFFPSYYH 59
MAAVA++P DA N +++K K+ESEF+VQKLVDMFTKLNPLAKEFFPS Y
Sbjct: 1 MAAVAEIPADA-----------NKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYS 49
Query: 60 QHTDHHFSVINN----NFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV 115
+ D+ F N +F K SA +NF NNRRRRN+FNQGR+++SGR+ +AQREDS+
Sbjct: 50 PNHDNRFQGFNQLSPTHFLVSTKPSADENFPNNRRRRNSFNQGRRKVSGRSLKAQREDSI 109
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RRTVYVS+IDQ++TEERLA LFSSCGQV+DCR+CGDPHSVLRFAFVEFADE+GAR ALNL
Sbjct: 110 RRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GGT+LGYYPVRVLPSKTAILPVNPTFLPRS+DEREMC+RTVYCTNIDKKV QAEVK FFE
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFE 229
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
+AC GEV RLRLLGDHVHSTRIAFVEFA+AESAI+ALNCSGM+LG+QPIRVSPSKTPVRP
Sbjct: 230 SAC-GEVMRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRP 288
Query: 296 RVTRPGMH 303
RVTRP H
Sbjct: 289 RVTRPASH 296
>gi|255578158|ref|XP_002529948.1| RNA-binding protein, putative [Ricinus communis]
gi|223530546|gb|EEF32425.1| RNA-binding protein, putative [Ricinus communis]
Length = 281
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/286 (77%), Positives = 254/286 (88%), Gaps = 7/286 (2%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA++ G+ A A+N N +++ SEF+VQKLVDMFTKLNPLAKEFFPS Y+
Sbjct: 1 MAAVAEITGEVAIASN-----NKKMDSDVKNSEFSVQKLVDMFTKLNPLAKEFFPSSYNN 55
Query: 61 H-TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTV 119
+ H+F +NN +KQS IDNF++NRR+RNN+NQG++RL+GRA+RAQR+DS+RRTV
Sbjct: 56 NNITHNFLNLNNFAVVVDKQSPIDNFSSNRRKRNNYNQGKRRLNGRAYRAQRDDSIRRTV 115
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
YVSDIDQ++TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGT+
Sbjct: 116 YVSDIDQHVTEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTV 175
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LGYYP RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK+ QAEVK FFE+ C
Sbjct: 176 LGYYPFRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKTFFESTC- 234
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
GEVTRLRLLGDHVHSTRIAFVEFA+AESAI+ALNCSGMV+G+QPIR
Sbjct: 235 GEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMVVGTQPIR 280
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RTVY ++ID+ V + + F + G+V R+ GD R AFVEFA A ALN
Sbjct: 113 RTVYVSDIDQHVTEERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 170
Query: 274 CSGMVLGSQPIRVSPSKTPVRP 295
G VLG P RV PSKT + P
Sbjct: 171 LGGTVLGYYPFRVLPSKTAILP 192
>gi|15231858|ref|NP_188063.1| CTC-interacting domain 9 protein [Arabidopsis thaliana]
gi|11994215|dbj|BAB01337.1| unnamed protein product [Arabidopsis thaliana]
gi|332642006|gb|AEE75527.1| CTC-interacting domain 9 protein [Arabidopsis thaliana]
Length = 327
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/282 (71%), Positives = 237/282 (84%), Gaps = 11/282 (3%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVIN-----NNFADDNKQSAID 83
++ES + KLV MF KLNPLAKEFFPSYY ++ + N ++F KQS +
Sbjct: 43 ETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQVAKANQFLPADDFETTKKQSGEE 102
Query: 84 -----NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
++N R+R N++QGR+RL+GR +AQREDS+RRTVYVSDIDQ++TEE LAGLFS
Sbjct: 103 FDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 162
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+CGQVVDCR+CGDPHSVLRFAFVEFAD+ GA AL+LGGTMLG+YPVRVLPSKTAILPVN
Sbjct: 163 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVN 222
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIA 258
PTFLPRSEDEREMC+RT+YCTNIDKKV QA+V+ FFE+AC GEVTRLRLLGD +HSTRIA
Sbjct: 223 PTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESAC-GEVTRLRLLGDQLHSTRIA 281
Query: 259 FVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRP 300
FVEFA+A+SA+ ALNCSGMV+GSQPIRVSPSKTPVRPR+TRP
Sbjct: 282 FVEFALADSALSALNCSGMVVGSQPIRVSPSKTPVRPRITRP 323
>gi|225462109|ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear
[Vitis vinifera]
gi|296088694|emb|CBI38144.3| unnamed protein product [Vitis vinifera]
Length = 292
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/309 (75%), Positives = 257/309 (83%), Gaps = 23/309 (7%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTV---QKLVDMFT--KLNPLAKEFFP 55
MAA A+M G+A A ++ N + S+SEF +VDM + KLNPLAKEFFP
Sbjct: 1 MAAGAEMSGEAVPAVPSSKNSD-------SKSEFGAGMQSMIVDMLSNLKLNPLAKEFFP 53
Query: 56 SYY-HQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDS 114
S Y H H +I +F+ D+ D + NNRRRRNN+NQGR+RLSGRAFRAQREDS
Sbjct: 54 SSYSHDH------LIPTDFSKDSPN---DAYPNNRRRRNNYNQGRRRLSGRAFRAQREDS 104
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+RRTVYVSDIDQ++TEERLA LFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN
Sbjct: 105 IRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 164
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNIDKKV QAEVK FF
Sbjct: 165 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVSQAEVKNFF 224
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
E AC GEV+RLRLLGDHVHSTRIAFVEFA+AESAI+ALNCSG+VLG+QPIRVSPSKTPVR
Sbjct: 225 ERAC-GEVSRLRLLGDHVHSTRIAFVEFAMAESAIVALNCSGLVLGTQPIRVSPSKTPVR 283
Query: 295 PRVTRPGMH 303
PRV R +H
Sbjct: 284 PRVPRATLH 292
>gi|388509636|gb|AFK42884.1| unknown [Lotus japonicus]
Length = 313
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/312 (70%), Positives = 255/312 (81%), Gaps = 15/312 (4%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKS-ESEFTVQKLVDMFTKLNPLAKEFFPSYYH 59
MAA ++P ++A + L++K + +SEF +QKLVD+FTKLNPLA+EF PS Y
Sbjct: 1 MAAATEIP--SSADAAAAAATGSKLDSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYA 58
Query: 60 Q--HTDHHFSVIN----NNF---ADDNKQSAIDNF--NNNRRRRNNFNQGRKRLSGRAFR 108
H DH N N F ++NK A D + NNRRRRNNFNQG +R +GR +
Sbjct: 59 AAAHRDHLHQGFNQWSPNPFLVNNNNNKPLADDQYPNANNRRRRNNFNQGGRRFTGRVLK 118
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQREDSVRRTVYVSDIDQ++TEERLA LF++CG V+DCR+CGDPHSVLRFAFVEFADE+G
Sbjct: 119 AQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYG 178
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ARAALNL GT+LGYYPVRVLPSKTAILPVNPTFLPRS+DEREMCSRTVYCTNIDKKV QA
Sbjct: 179 ARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
EVK FFE +C GEVTR+RLLGDHVHSTRIAFVEFA+AESAI+AL+CSGM+LG+QP+RVSP
Sbjct: 239 EVKNFFEISC-GEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSP 297
Query: 289 SKTPVRPRVTRP 300
SKTPVRPRV RP
Sbjct: 298 SKTPVRPRVPRP 309
>gi|79319864|ref|NP_001031182.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
gi|332194856|gb|AEE32977.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
Length = 308
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/314 (65%), Positives = 245/314 (78%), Gaps = 26/314 (8%)
Query: 1 MAAVADMPGDAAAANN---TNNNKNNNLETK----------KSESEF-TVQKLVDMFTKL 46
MAA+ +M D+ N T + + ++K KS+ E+ ++KLV MF KL
Sbjct: 1 MAAITEMATDSNDVINDGGTGDGIEKSTDSKPEIESDDLKPKSKPEYDQMKKLVAMFKKL 60
Query: 47 NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-RLSGR 105
NP AKEFFPSY N N +DD + + +N++RRNN+NQGR+ RL GR
Sbjct: 61 NPEAKEFFPSYKR----------NTNQSDDFVIAIKPSGEDNKKRRNNYNQGRRVRLPGR 110
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRFAFVEF+D
Sbjct: 111 ASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSD 170
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT+YCTN+DK
Sbjct: 171 DQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNA 230
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
+ +V FF++AC GEVTRLRLLGD VHSTRIAFVEFA+AESA+ ALNCSG+VLGSQPIR
Sbjct: 231 TEDDVNTFFQSAC-GEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNCSGIVLGSQPIR 289
Query: 286 VSPSKTPVRPRVTR 299
VSPSKTPVR R+TR
Sbjct: 290 VSPSKTPVRSRITR 303
>gi|51969708|dbj|BAD43546.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51970080|dbj|BAD43732.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 295
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/273 (72%), Positives = 230/273 (84%), Gaps = 13/273 (4%)
Query: 29 KSESEF-TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNN 87
KS+ E+ ++KLV MF KLNP AKEFFPSY N N +DD + + +
Sbjct: 29 KSKPEYDQMKKLVAMFKKLNPEAKEFFPSYKR----------NTNQSDDFVIAIKPSGED 78
Query: 88 NRRRRNNFNQGRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
N++RRNN+NQGR+ RL GRA +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDC
Sbjct: 79 NKKRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDC 138
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDP+SVLRFAFVEF+D+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSE
Sbjct: 139 RICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSE 198
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DEREMCSRT+YCTN+DK + +V FF++AC GEVTRLRLLGD VHSTRIAFVEFA+AE
Sbjct: 199 DEREMCSRTIYCTNVDKNATEDDVNTFFQSAC-GEVTRLRLLGDQVHSTRIAFVEFAMAE 257
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
SA+ ALNCSG+VLGSQPIRVSPSKTPVR R+TR
Sbjct: 258 SAVAALNCSGIVLGSQPIRVSPSKTPVRSRITR 290
>gi|116781618|gb|ABK22180.1| unknown [Picea sitchensis]
Length = 288
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 224/270 (82%), Gaps = 18/270 (6%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNN--FADDNKQSAIDNFNNNRRRRN 93
+++LVD+ +KLNPLA+EF P H F +IN N FA NN+RR++N
Sbjct: 35 MRELVDLLSKLNPLAEEFIP---QPHRSPSF-IINGNGSFA-----------NNSRRKKN 79
Query: 94 NFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
NFNQG++RL+GR RAQ+EDSVRRTVYV DID +TEE+LA LF +CGQV+DCR+CGDP+
Sbjct: 80 NFNQGKRRLNGRNIRAQQEDSVRRTVYVCDIDHQVTEEQLAALFINCGQVIDCRICGDPN 139
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
SVLRFAF+EFADE GARAAL+L GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+
Sbjct: 140 SVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCA 199
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RT+YCTNIDKKV Q EV+ FFE+ C GEV+RLRLLGDHVHSTRIAFVEF +AESAILALN
Sbjct: 200 RTIYCTNIDKKVSQVEVRMFFESLC-GEVSRLRLLGDHVHSTRIAFVEFVMAESAILALN 258
Query: 274 CSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
CSG ++GS PIRVSPSKTPVRPR+ P MH
Sbjct: 259 CSGAIVGSLPIRVSPSKTPVRPRIPHPTMH 288
>gi|449438949|ref|XP_004137250.1| PREDICTED: protein MEI2-like 2-like [Cucumis sativus]
gi|449483120|ref|XP_004156498.1| PREDICTED: protein MEI2-like 2-like [Cucumis sativus]
Length = 306
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/309 (65%), Positives = 239/309 (77%), Gaps = 16/309 (5%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA+ +AAA N + N N +SEF KL +MF+ LNPLAKEFFPS Y
Sbjct: 1 MAAVAEDSSEAAAVKNFDPNMN-------PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSH 53
Query: 61 H--TDHHFSVINNNFADDNKQSAIDNF---NNNRRRRNNFN-QGRKRLSG-RAFRAQRED 113
H D HF NNN + D +NNRRRR FN QGR+R++ R+ RAQ+E+
Sbjct: 54 HDRQDFHFYYQNNNRSLAKNFQVADQLLHSDNNRRRRPEFNNQGRRRMNNNRSVRAQQEE 113
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
S+RRTVYVSDID++++EE LA +F CG V DCR+CGDPHSVLRFAFVEFA+EH ARAA
Sbjct: 114 SIRRTVYVSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAA 173
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ L GT++G YPV+VLPSKTAILPVNPTFLP+S DE +MC+RT+YCTNIDKKV QAEVK
Sbjct: 174 VGLSGTVVGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKS 233
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
FFE +C GEVTRLRLLGD +HSTRIAFVEFA+AE+A+ ALNCSGM+LG+QPIRVSPSKTP
Sbjct: 234 FFETSC-GEVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTP 292
Query: 293 VRPRVTRPG 301
VRPRVTRPG
Sbjct: 293 VRPRVTRPG 301
>gi|297829996|ref|XP_002882880.1| ctc-interacting domain 9 [Arabidopsis lyrata subsp. lyrata]
gi|297328720|gb|EFH59139.1| ctc-interacting domain 9 [Arabidopsis lyrata subsp. lyrata]
Length = 337
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 227/284 (79%), Gaps = 13/284 (4%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVIN-----NNFADDNKQSAID 83
K +SEF +QKLV MF KLNPLAKEFFPSYY +HH N ++FA NKQS +
Sbjct: 51 KPKSEFDMQKLVAMFKKLNPLAKEFFPSYYDPKKNHHVGKANQFLSADDFATTNKQSGEE 110
Query: 84 -----NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
++N R+R N++QGR+RL+GR +AQREDS+RRTVYVSDIDQ++TEE LAGLFS
Sbjct: 111 FDPDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 170
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV--LPSKTAILP 196
+CGQVVDCR+CGDPHSVLRFAFVEFAD+ GAR AL+LGGTMLG+YPVRV S +
Sbjct: 171 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAREALSLGGTMLGFYPVRVKNCHSTSESHI 230
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
+ SEDEREMC+RT+YCTNIDKKV QA+V+ FFE+AC GEVTRLRLLGD +HSTR
Sbjct: 231 SSKGKCSDSEDEREMCTRTIYCTNIDKKVSQADVRNFFESAC-GEVTRLRLLGDQLHSTR 289
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRP 300
IAFVEF +A+SA+ ALNCSGMV+GSQPIRVSPSKTPVRPR+TRP
Sbjct: 290 IAFVEFTLADSALRALNCSGMVVGSQPIRVSPSKTPVRPRITRP 333
>gi|15220902|ref|NP_175769.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
gi|12324022|gb|AAG51971.1|AC024260_9 RNA-binding protein, putative; 40942-42923 [Arabidopsis thaliana]
gi|48427656|gb|AAT42377.1| At1g53650 [Arabidopsis thaliana]
gi|332194855|gb|AEE32976.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
Length = 314
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/314 (64%), Positives = 241/314 (76%), Gaps = 20/314 (6%)
Query: 1 MAAVADMPGDAAAANN---TNNNKNNNLETK----------KSESEF-TVQKLVDMFTKL 46
MAA+ +M D+ N T + + ++K KS+ E+ ++KLV MF KL
Sbjct: 1 MAAITEMATDSNDVINDGGTGDGIEKSTDSKPEIESDDLKPKSKPEYDQMKKLVAMFKKL 60
Query: 47 NPLAKEFFPSYY-HQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR 105
NP AKEFFPSY + + F + +DNK+ AI N RRR N R RL GR
Sbjct: 61 NPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNKKVAI----NRRRRNNYNQGRRVRLPGR 116
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRFAFVEF+D
Sbjct: 117 ASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSD 176
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT+YCTN+DK
Sbjct: 177 DQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNA 236
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
+ +V FF++AC GEVTRLRLLGD VHSTRIAFVEFA+AESA+ ALNCSG+VLGSQPIR
Sbjct: 237 TEDDVNTFFQSAC-GEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNCSGIVLGSQPIR 295
Query: 286 VSPSKTPVRPRVTR 299
VSPSKTPVR R+TR
Sbjct: 296 VSPSKTPVRSRITR 309
>gi|255582539|ref|XP_002532053.1| RNA-binding protein, putative [Ricinus communis]
gi|223528275|gb|EEF30325.1| RNA-binding protein, putative [Ricinus communis]
Length = 385
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 226/286 (79%), Gaps = 7/286 (2%)
Query: 22 NNNLETKKSESEFT-VQKLVDMFTKLNPLAKEFFPSYY---HQHTDHHFSVINNNFADDN 77
N+ ++ KS++ + LV++ + LNP+AKEF P H + + F NN A N
Sbjct: 103 NHQIQRAKSDNGLNDMSDLVEILSNLNPMAKEFVPPSLVNNHGYLGNGFGYTNNFPAQTN 162
Query: 78 KQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLF 137
+AI N +R++N+FNQGR+R++ R AQRED +RRTVYVSDIDQ +TEE+LAGLF
Sbjct: 163 PGNAIGN--TIKRKKNSFNQGRRRMNTRTSMAQREDVIRRTVYVSDIDQQVTEEQLAGLF 220
Query: 138 SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPV 197
CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LG+YP+RVLPSKTAI PV
Sbjct: 221 VHCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGFYPLRVLPSKTAIAPV 280
Query: 198 NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRI 257
NPTFLPRSEDEREMC+RTVYCTNIDKKV QA+V+ FFE+ C GEV RLRLLGD+ HSTRI
Sbjct: 281 NPTFLPRSEDEREMCARTVYCTNIDKKVTQADVRLFFESFC-GEVQRLRLLGDYHHSTRI 339
Query: 258 AFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
AFVEF VAESAILALNCSG VLGS PIRVSPSKTPVRPR+ R +H
Sbjct: 340 AFVEFTVAESAILALNCSGAVLGSLPIRVSPSKTPVRPRIPRSPLH 385
>gi|168046548|ref|XP_001775735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672887|gb|EDQ59418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 213/269 (79%), Gaps = 14/269 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95
+++L D+ TKLNPLAKEF P H D A S++ + R++N F
Sbjct: 1 MRELEDLLTKLNPLAKEFVPP---SHAD---------LASTTAPSSVASSKGQPRKKNGF 48
Query: 96 NQ-GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
NQ ++R++ R RAQREDS+RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVCGDP+S
Sbjct: 49 NQVNKRRVNSRTSRAQREDSIRRTVYVSDIDQQVTEEQLAALFITCGQVVDCRVCGDPNS 108
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
VLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI+PVNPTFLPRSEDEREMC+R
Sbjct: 109 VLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLPRSEDEREMCAR 168
Query: 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC 274
T+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESA+ ALNC
Sbjct: 169 TIYCTNIDKKVSQADVKLFFESLC-GEVARLRLLGDYHHSTRIAFVEFVMAESAMAALNC 227
Query: 275 SGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
SG +LGS PIRVSPSKTPVRPR R +H
Sbjct: 228 SGAILGSLPIRVSPSKTPVRPRSPRSPLH 256
>gi|359474160|ref|XP_002272303.2| PREDICTED: polyadenylate-binding protein [Vitis vinifera]
Length = 398
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/279 (65%), Positives = 220/279 (78%), Gaps = 10/279 (3%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFN- 86
+ +S +++L ++F+KLNP+A+EF P + +N F + ++ + N
Sbjct: 127 RNGDSGVDMRELQELFSKLNPMAEEFVPPSLANNG------LNGGFYSNGSETHNNTRNG 180
Query: 87 --NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV 144
N RR++NNF QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQVV
Sbjct: 181 QVNGRRKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFITCGQVV 240
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCRVCGDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPR
Sbjct: 241 DCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPR 300
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
+EDEREMC+RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +
Sbjct: 301 NEDEREMCARTIYCTNIDKKVSQADVKLFFESVC-GEVYRLRLLGDYHHSTRIAFVEFIM 359
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
AESAI ALNCSG+VLGS PIRVSPSKTPVRPR R +H
Sbjct: 360 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPIH 398
>gi|225455232|ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera]
gi|302143972|emb|CBI23077.3| unnamed protein product [Vitis vinifera]
Length = 361
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 215/272 (79%), Gaps = 8/272 (2%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQH---TDHHFSVINNNFADDNKQSAIDNFNNNRRR 91
++ L D+ +KLNP+A+EF P S + H F NN N +A N N RR+
Sbjct: 94 IRDLEDLLSKLNPMAEEFVPPSLANGHGWSAGAAFGYTNNFVLQANFGNA--NGNAGRRK 151
Query: 92 RNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
RNN+NQ ++R++ R AQRE+ ++RTVYVSDIDQ +TEE LA LF +CGQVVDCR+CGD
Sbjct: 152 RNNYNQ-KRRINSRTSMAQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGD 210
Query: 152 PHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
P+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPRSEDEREM
Sbjct: 211 PNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREM 270
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
C+RT+YCTNIDKKV QAEVK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESAI A
Sbjct: 271 CARTIYCTNIDKKVTQAEVKLFFESIC-GEVHRLRLLGDYHHSTRIAFVEFVMAESAIAA 329
Query: 272 LNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
LNCSG +LGS PIRVSPSKTPVRPR RP +H
Sbjct: 330 LNCSGAILGSLPIRVSPSKTPVRPRAPRPALH 361
>gi|297742454|emb|CBI34603.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/282 (65%), Positives = 218/282 (77%), Gaps = 17/282 (6%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNN 87
+ +S +++L ++F+KLNP+A+EF P S+ NN + + NN
Sbjct: 127 RNGDSGVDMRELQELFSKLNPMAEEFVPP----------SLANNGLNGGFYSNGSETHNN 176
Query: 88 NR------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
R RR+NNF QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CG
Sbjct: 177 TRNGQVNGRRKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFITCG 236
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCRVCGDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTF
Sbjct: 237 QVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTF 296
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVE 261
LPR+EDEREMC+RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVE
Sbjct: 297 LPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVC-GEVYRLRLLGDYHHSTRIAFVE 355
Query: 262 FAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
F +AESAI ALNCSG+VLGS PIRVSPSKTPVRPR R +H
Sbjct: 356 FIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPIH 397
>gi|115435208|ref|NP_001042362.1| Os01g0209400 [Oryza sativa Japonica Group]
gi|56201519|dbj|BAD73038.1| RNA-binding protein -like [Oryza sativa Japonica Group]
gi|56201749|dbj|BAD73106.1| RNA-binding protein -like [Oryza sativa Japonica Group]
gi|113531893|dbj|BAF04276.1| Os01g0209400 [Oryza sativa Japonica Group]
gi|215737283|dbj|BAG96212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 308
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 180/274 (65%), Positives = 212/274 (77%), Gaps = 11/274 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINN----------NFADDNKQSAIDNF 85
VQKLVD+ +KLNP AKEF PS + ++ + + K+S D +
Sbjct: 32 VQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESGADAY 91
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
RRR +QGR+R++ RA A REDS+RRTVYVSDID +TEERLA +F++CGQVVD
Sbjct: 92 QQRRRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADIFANCGQVVD 151
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDPHSVLRFAF+EFADE GAR ALNLGGTMLG+YPVRVLPSKTAILPVNP FLPR+
Sbjct: 152 CRICGDPHSVLRFAFIEFADEEGARTALNLGGTMLGFYPVRVLPSKTAILPVNPKFLPRT 211
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
EDE+EM RTVYCTNIDKKV Q +VK FFE C GEV+RLRLLGD+VHSTRIAFVEF A
Sbjct: 212 EDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELC-GEVSRLRLLGDNVHSTRIAFVEFVHA 270
Query: 266 ESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
E AI+ALNCSGM+LG+ P+RVSPSKTPV+PR+ R
Sbjct: 271 ECAIMALNCSGMILGTLPVRVSPSKTPVKPRLNR 304
>gi|356516140|ref|XP_003526754.1| PREDICTED: uncharacterized protein LOC100799585 [Glycine max]
Length = 378
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 180/274 (65%), Positives = 214/274 (78%), Gaps = 7/274 (2%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHTDHHFSVINNNFADDNKQSAIDNFNN-----NR 89
++ L ++ +KLNP+A+EF P S + H F N ++NF N NR
Sbjct: 106 MRDLEELLSKLNPMAEEFVPPSLSNTHGYLAGPGAGAGFGYPNNFILLNNFGNANGQTNR 165
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149
RR+N +NQG++R++ + +RE+ RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVC
Sbjct: 166 RRKNGYNQGKRRVNHKMDMEKREEMTRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVC 225
Query: 150 GDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 209
GDP+S+LRFAF+EF DE GARAALNL GTMLGYYP+RVLPSKTAI PVNPTFLPRSEDER
Sbjct: 226 GDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDER 285
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
EMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF VAESAI
Sbjct: 286 EMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVQRLRLLGDYHHSTRIAFVEFTVAESAI 344
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
AL+CSG++LGS PIRVSPSKTPVR R RP MH
Sbjct: 345 AALSCSGVILGSLPIRVSPSKTPVRSRAPRPTMH 378
>gi|255555781|ref|XP_002518926.1| RNA-binding protein, putative [Ricinus communis]
gi|223541913|gb|EEF43459.1| RNA-binding protein, putative [Ricinus communis]
Length = 379
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 215/287 (74%), Gaps = 23/287 (8%)
Query: 36 VQKLVDMFTKLNPLAKEFFP----------SYYHQHTDHHFSVINNNFADDNKQSAIDNF 85
+++L ++F+KLNP+A+EF P +Y H + NN +N A
Sbjct: 97 IRELQELFSKLNPMAEEFVPPSLANNKISNNYIHGLNGLNVGFYTNN---NNYDPAFMLT 153
Query: 86 NNNR---------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
N +R RR+ N+NQG++RL+ R AQRE+ +RRTVYVSDIDQ +TEE+LA L
Sbjct: 154 NASRNGQLNGSAARRKKNYNQGKRRLNSRTSMAQREEIIRRTVYVSDIDQQVTEEQLAAL 213
Query: 137 FSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
F CGQVVDCR+CGDP+SVLRFAF+EF E GARAALNL GT+LGYYPVRVLPSKTAI P
Sbjct: 214 FVGCGQVVDCRICGDPNSVLRFAFIEFTHEEGARAALNLAGTVLGYYPVRVLPSKTAIAP 273
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
VNPTFLPRS+DEREMC RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTR
Sbjct: 274 VNPTFLPRSDDEREMCIRTIYCTNIDKKVTQADVKLFFESVC-GEVYRLRLLGDYHHSTR 332
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
IAFVEF +AESAI ALNCSG+VLGS PIRVSPSKTPVRPR R MH
Sbjct: 333 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRIPMH 379
>gi|255646437|gb|ACU23697.1| unknown [Glycine max]
Length = 291
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/284 (64%), Positives = 219/284 (77%), Gaps = 25/284 (8%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQH---------------TDHHFSVINNNFADDNKQ 79
++ L ++ +KLNP+A+EF P S + H ++F ++ NNF D N Q
Sbjct: 17 MRDLEELLSKLNPMAEEFVPPSLTNTHGYLPGPGAGAGAGFGYPNNF-ILLNNFGDANGQ 75
Query: 80 SAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS 139
+ NRRR+N +N G++R++ + +RE+ +RRTVYVSDIDQ +TEE+LAGLF +
Sbjct: 76 T-------NRRRKNGYNHGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAGLFLN 128
Query: 140 CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
CGQVVD RVCGDP+S+LRFAFVEF DE GARAALNL GTMLGYYP+RVLPSKTAI PVNP
Sbjct: 129 CGQVVDYRVCGDPNSILRFAFVEFTDEDGARAALNLSGTMLGYYPLRVLPSKTAIAPVNP 188
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAF 259
TFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV RLRLLGD+ HSTRIAF
Sbjct: 189 TFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVQRLRLLGDYHHSTRIAF 247
Query: 260 VEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
VEF VAESAI AL+CSG++LGS PIRVSPSKTPVR R RP MH
Sbjct: 248 VEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 291
>gi|218187722|gb|EEC70149.1| hypothetical protein OsI_00850 [Oryza sativa Indica Group]
Length = 317
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/283 (63%), Positives = 213/283 (75%), Gaps = 20/283 (7%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINN----------NFADDNKQSAIDNF 85
VQKLVD+ +KLNP AKEF PS + ++ + + K+S D +
Sbjct: 32 VQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESGADAY 91
Query: 86 NNNR---------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
R RR +QGR+R++ RA A REDS+RRTVYVSDID +TEERLA +
Sbjct: 92 QQRRDLTDDDQLLRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADI 151
Query: 137 FSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
F++CGQVVDCR+CGDPHSVLRFAF+EFADE GARAALNLGGTMLG+YPVRVLPSKTAILP
Sbjct: 152 FANCGQVVDCRICGDPHSVLRFAFIEFADEEGARAALNLGGTMLGFYPVRVLPSKTAILP 211
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
VNP FLPR+EDE+EM RTVYCTNIDKKV Q +VK FFE C GEV+RLRLLGD+VHSTR
Sbjct: 212 VNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELC-GEVSRLRLLGDNVHSTR 270
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
IAFVEF AE AI+ALNCSGM+LG+ P+RVSPSKTPV+PR+ R
Sbjct: 271 IAFVEFVHAECAIMALNCSGMILGTLPVRVSPSKTPVKPRLNR 313
>gi|242051635|ref|XP_002454963.1| hypothetical protein SORBIDRAFT_03g002180 [Sorghum bicolor]
gi|241926938|gb|EES00083.1| hypothetical protein SORBIDRAFT_03g002180 [Sorghum bicolor]
Length = 298
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/311 (61%), Positives = 223/311 (71%), Gaps = 25/311 (8%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA+ AAA K+ E + VQKLVD+ +KLNP AKEF PS
Sbjct: 1 MAAVAEGSASAAA--------------KEVEYQAGVQKLVDLLSKLNPAAKEFVPSAAAS 46
Query: 61 HTDHHFSVINNNF---ADDNKQSAID-----NFNNNRRRRNN--FNQGRKRLSGRAFRAQ 110
S F + A D F N RRR N NQGR+R + R RA+
Sbjct: 47 PPKKALSADAPVFDYRSIGGGNGATDAAFYVGFGNQHRRRGNGYINQGRRRTNDRVRRAE 106
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
REDS+RRTVYVS++D +TEERLA +F++CGQVVDCR+CGDPHSVLRFAF+EF+DE GAR
Sbjct: 107 REDSIRRTVYVSELDHTVTEERLADIFATCGQVVDCRICGDPHSVLRFAFIEFSDEEGAR 166
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
ALNLGGT+ G+YPVRVLPSKTAILPVNP FLPR+EDE+EM RTVYCTNIDK V Q +V
Sbjct: 167 TALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVMRTVYCTNIDKMVTQLDV 226
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
K+FFE C GEV+RLRLLGD+VHSTRIAFVEF AE AI+ALNCSGM+LG+ P+RVSPSK
Sbjct: 227 KKFFEELC-GEVSRLRLLGDNVHSTRIAFVEFVHAEGAIMALNCSGMILGTLPVRVSPSK 285
Query: 291 TPVRPRVTRPG 301
TPV+PRV R G
Sbjct: 286 TPVKPRVNRVG 296
>gi|15223304|ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
gi|6714278|gb|AAF25974.1|AC017118_11 F6N18.17 [Arabidopsis thaliana]
gi|332193408|gb|AEE31529.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
Length = 358
Score = 357 bits (915), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/278 (63%), Positives = 214/278 (76%), Gaps = 12/278 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVI----------NNNFADDNKQSAIDNF 85
+++L ++F+KLNP+A+EF P ++ + + NN FA +
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNEN 142
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
RR+++ F QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVD
Sbjct: 143 GGFRRKKS-FGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
EDEREMC+RT+YCTNIDKKV Q++VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +A
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFC-GEVYRLRLLGDYQHSTRIAFVEFVMA 320
Query: 266 ESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
ESAI ALNCSG+VLGS PIRVSPSKTPVRPR R MH
Sbjct: 321 ESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH 358
>gi|222617961|gb|EEE54093.1| hypothetical protein OsJ_00835 [Oryza sativa Japonica Group]
Length = 317
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/283 (63%), Positives = 212/283 (74%), Gaps = 20/283 (7%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINN----------NFADDNKQSAIDNF 85
VQKLVD+ +KLNP AKEF PS + ++ + + K+S D +
Sbjct: 32 VQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESGADAY 91
Query: 86 NNNR---------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
R RR +QGR+R++ RA A REDS+RRTVYVSDID +TEERLA +
Sbjct: 92 QQRRDLTDDDQLLRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADI 151
Query: 137 FSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
F++CGQVVDCR+CGDPHSVLRFAF+EFADE GAR ALNLGGTMLG+YPVRVLPSKTAILP
Sbjct: 152 FANCGQVVDCRICGDPHSVLRFAFIEFADEEGARTALNLGGTMLGFYPVRVLPSKTAILP 211
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
VNP FLPR+EDE+EM RTVYCTNIDKKV Q +VK FFE C GEV+RLRLLGD+VHSTR
Sbjct: 212 VNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELC-GEVSRLRLLGDNVHSTR 270
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
IAFVEF AE AI+ALNCSGM+LG+ P+RVSPSKTPV+PR+ R
Sbjct: 271 IAFVEFVHAECAIMALNCSGMILGTLPVRVSPSKTPVKPRLNR 313
>gi|449438861|ref|XP_004137206.1| PREDICTED: uncharacterized protein LOC101204595 [Cucumis sativus]
Length = 403
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/267 (63%), Positives = 212/267 (79%), Gaps = 4/267 (1%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD---NKQSAIDNFNNNRRRR 92
++ L ++ +KLNP+A+EF P ++ +F+ + +D S + NN+RR++
Sbjct: 134 MRDLEELLSKLNPMAEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKK 193
Query: 93 NNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
N F+QGR+R++ + +R++ RRTVYVSDIDQ +TEE LA +F+SCG+VVDCR+CGDP
Sbjct: 194 NGFSQGRRRMNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFASCGEVVDCRICGDP 253
Query: 153 HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+S+L FAF+EF DE GARA+LNL GT+LG+YPVRVLPSKTAI PVNP FLPRS+DEREMC
Sbjct: 254 NSILHFAFIEFTDEEGARASLNLSGTVLGFYPVRVLPSKTAIAPVNPDFLPRSDDEREMC 313
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
SRT+YCTNIDKKV QAEVK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESAI AL
Sbjct: 314 SRTIYCTNIDKKVTQAEVKLFFESLC-GEVQRLRLLGDYHHSTRIAFVEFTMAESAIAAL 372
Query: 273 NCSGMVLGSQPIRVSPSKTPVRPRVTR 299
NCSG+VLGS PIRVSPSKTPVRPR R
Sbjct: 373 NCSGVVLGSLPIRVSPSKTPVRPRSPR 399
>gi|357464159|ref|XP_003602361.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355491409|gb|AES72612.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 384
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/282 (63%), Positives = 214/282 (75%), Gaps = 15/282 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFP----SYYHQHT----DHHFSVINNNFADDNKQSAIDNFNN 87
++ L ++ +KLNP+A+EF P + YH + + F NNNF N +
Sbjct: 104 MRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAAGPNAGFGYPNNNFMLQNNFGNANANAT 163
Query: 88 ------NRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
NRRR+N +N ++R+ + +RE+ +RRTVYVSDIDQ +TEE+LA LF +CG
Sbjct: 164 ANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCG 223
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCRVCGDP+S+LRFAFVEF DE GARAALNL GTMLGYYP+RVLPSKTAI PVNPTF
Sbjct: 224 QVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 283
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVE 261
LPRSEDEREMC+RT+YCTN+DKK+ QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVE
Sbjct: 284 LPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESIC-GEVQRLRLLGDYHHSTRIAFVE 342
Query: 262 FAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
FAVAESAI AL+CSG+VLGS PIRVSPSKTPVR R R MH
Sbjct: 343 FAVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARAVRTPMH 384
>gi|449483221|ref|XP_004156526.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Cucumis
sativus]
Length = 316
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/267 (63%), Positives = 212/267 (79%), Gaps = 4/267 (1%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD---NKQSAIDNFNNNRRRR 92
++ L ++ +KLNP+A+EF P ++ +F+ + +D S + NN+RR++
Sbjct: 47 MRDLEELLSKLNPMAEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKK 106
Query: 93 NNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
N F+QGR+R++ + +R++ RRTVYVSDIDQ +TEE LA +F+SCG+VVDCR+CGDP
Sbjct: 107 NGFSQGRRRMNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFASCGEVVDCRICGDP 166
Query: 153 HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+S+L FAF+EF DE GARA+LNL GT+LG+YPVRVLPSKTAI PVNP FLPRS+DEREMC
Sbjct: 167 NSILHFAFIEFTDEEGARASLNLSGTVLGFYPVRVLPSKTAIAPVNPDFLPRSDDEREMC 226
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
SRT+YCTNIDKKV QAEVK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESAI AL
Sbjct: 227 SRTIYCTNIDKKVTQAEVKLFFESLC-GEVQRLRLLGDYHHSTRIAFVEFTMAESAIAAL 285
Query: 273 NCSGMVLGSQPIRVSPSKTPVRPRVTR 299
NCSG+VLGS PIRVSPSKTPVRPR R
Sbjct: 286 NCSGVVLGSLPIRVSPSKTPVRPRSPR 312
>gi|302769672|ref|XP_002968255.1| hypothetical protein SELMODRAFT_66365 [Selaginella moellendorffii]
gi|300163899|gb|EFJ30509.1| hypothetical protein SELMODRAFT_66365 [Selaginella moellendorffii]
Length = 260
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 174/263 (66%), Positives = 209/263 (79%), Gaps = 6/263 (2%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS--VINNNFADDNKQSAIDNFNNNRRRRN 93
+++L D+ KLNPLAKEF P D S +++ +Q +R++N
Sbjct: 1 MRELEDLLKKLNPLAKEFVPP---SRGDPALSKELLSKQINHQQQQLQQQQPLQQQRKQN 57
Query: 94 NFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+N G+KR + R +AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQV+DCRVCGDP+
Sbjct: 58 GYNTGKKRYNNRQSKAQREECIRRTVYVSDIDQQVTEEQLAALFINCGQVIDCRVCGDPN 117
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
SVLRFAFVEF DE GAR ALNL GTMLG+YPVRVLPSKTAI+PVNPTFLPRSEDER+MC+
Sbjct: 118 SVLRFAFVEFTDEEGARQALNLAGTMLGFYPVRVLPSKTAIVPVNPTFLPRSEDERQMCA 177
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RT+YCTNIDKKV Q++VK FFE+ C GEV+RLRLLGD+ HSTRIAFVEFA+AESA+ ALN
Sbjct: 178 RTIYCTNIDKKVSQSDVKLFFESLC-GEVSRLRLLGDYHHSTRIAFVEFALAESAMAALN 236
Query: 274 CSGMVLGSQPIRVSPSKTPVRPR 296
CSG +LGS PIRVSPSKTPVRPR
Sbjct: 237 CSGAILGSLPIRVSPSKTPVRPR 259
>gi|297853152|ref|XP_002894457.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297340299|gb|EFH70716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 769
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/262 (69%), Positives = 212/262 (80%), Gaps = 7/262 (2%)
Query: 42 MFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN---RRRRNNFNQG 98
MF KLNP AKEFFPSY ++T+ S +++F K S DN + RRR N
Sbjct: 1 MFKKLNPEAKEFFPSY-KKNTNQSLS--SDDFVIAKKPSGEDNKKDGINRRRRNNYNQGR 57
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
R RL GRA +AQRE S+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRF
Sbjct: 58 RVRLPGRASKAQREVSIRRTVYVSDIDQSVTEEVLAGLFSSCGQVVDCRICGDPNSVLRF 117
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
AFVEF+D+ GARAAL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RT+YC
Sbjct: 118 AFVEFSDDQGARAALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYC 177
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMV 278
TN+DK + VK FF++AC GEVTRLRLLGD VHSTRIAFVEFA+AESA+ ALNCSG+V
Sbjct: 178 TNVDKNATEDVVKTFFQSAC-GEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNCSGIV 236
Query: 279 LGSQPIRVSPSKTPVRPRVTRP 300
LGSQPIR+S ++ + R + P
Sbjct: 237 LGSQPIRLSQMRSALGRRFSNP 258
>gi|302788706|ref|XP_002976122.1| hypothetical protein SELMODRAFT_56081 [Selaginella moellendorffii]
gi|300156398|gb|EFJ23027.1| hypothetical protein SELMODRAFT_56081 [Selaginella moellendorffii]
Length = 267
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/271 (64%), Positives = 208/271 (76%), Gaps = 11/271 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR---- 91
+++L D+ KLNPLAKEF P D + F + F + R+
Sbjct: 1 MRELEDLLKKLNPLAKEFVPPSPTTQGDLEVLLETKAFF---VLATFSFFAGSDRKLGLF 57
Query: 92 ---RNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
+N +N G+KR + R +AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQV+DCRV
Sbjct: 58 LVQQNGYNTGKKRYNNRQSKAQREECIRRTVYVSDIDQQVTEEQLAALFINCGQVIDCRV 117
Query: 149 CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE 208
CGDP+SVLRFAFVEF DE GAR ALNL GTMLG+YPVRVLPSKTAI+PVNPTFLPRSEDE
Sbjct: 118 CGDPNSVLRFAFVEFTDEEGARQALNLAGTMLGFYPVRVLPSKTAIVPVNPTFLPRSEDE 177
Query: 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
R+MC+RT+YCTNIDKKV Q++VK FFE+ C GEV+RLRLLGD+ HSTRIAFVEFA+AESA
Sbjct: 178 RQMCARTIYCTNIDKKVSQSDVKLFFESLC-GEVSRLRLLGDYHHSTRIAFVEFALAESA 236
Query: 269 ILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
+ ALNCSG +LGS PIRVSPSKTPVRPR R
Sbjct: 237 MAALNCSGAILGSLPIRVSPSKTPVRPRSPR 267
>gi|8671859|gb|AAF78422.1|AC018748_1 Contains similarity to RNA-binding protein from Arabidopsis
thaliana gi|2129727 and contains RNA recognition
PF|00076 domain. ESTs gb|H37317, gb|F14415, gb|AA651290
come from this gene [Arabidopsis thaliana]
Length = 829
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 174/246 (70%), Positives = 201/246 (81%), Gaps = 6/246 (2%)
Query: 42 MFTKLNPLAKEFFPSYY-HQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100
MF KLNP AKEFFPSY + + F + +DNK+ AI+ N + R
Sbjct: 1 MFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNKKVAINRRRRNNYNQGR----RV 56
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
RL GRA +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRFAF
Sbjct: 57 RLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAF 116
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTN 220
VEF+D+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT+YCTN
Sbjct: 117 VEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTN 176
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLG 280
+DK + +V FF++AC GEVTRLRLLGD VHSTRIAFVEFA+AESA+ ALNCSG+VLG
Sbjct: 177 VDKNATEDDVNTFFQSAC-GEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNCSGIVLG 235
Query: 281 SQPIRV 286
SQPI V
Sbjct: 236 SQPISV 241
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RTVY ++ID+ V + + F ++CG +V R+ GD R AFVEF+ + A AL+
Sbjct: 73 RTVYVSDIDQSVTEEGLAGLF-SSCG-QVVDCRICGDPNSVLRFAFVEFSDDQGARSALS 130
Query: 274 CSGMVLGSQPIRVSPSKTPVRP 295
G ++G P+RV PSKT + P
Sbjct: 131 LGGTMIGYYPVRVLPSKTAILP 152
>gi|224118386|ref|XP_002317806.1| predicted protein [Populus trichocarpa]
gi|222858479|gb|EEE96026.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 208/265 (78%), Gaps = 3/265 (1%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQ--SAIDNFN 86
KS + LV+M +KLNP+A+EF P H + N + Q + I N
Sbjct: 18 KSNGVNDMNDLVEMLSKLNPMAEEFVPPSLANHPGFFGNGFGFNANNFLVQINNGIANGQ 77
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRR++N++NQGR+R++ R AQR++ ++RTVYVSDIDQ +TEE+LAGLF CGQVVDC
Sbjct: 78 TNRRKKNSYNQGRRRMNNRTSMAQRDEIIKRTVYVSDIDQQVTEEQLAGLFIHCGQVVDC 137
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDP+SVLRFAFVEF DE GAR AL+L GT+LG+YP+RVLPSKTAI PVNPTFLPRSE
Sbjct: 138 RICGDPNSVLRFAFVEFTDEEGARTALSLSGTVLGFYPLRVLPSKTAIAPVNPTFLPRSE 197
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DEREMC+RTVYCTNIDKK+ QA+V+ FFE+ C GEV RLRLLGD+ HSTRIAFVEFAVAE
Sbjct: 198 DEREMCARTVYCTNIDKKITQADVRLFFESFC-GEVHRLRLLGDYHHSTRIAFVEFAVAE 256
Query: 267 SAILALNCSGMVLGSQPIRVSPSKT 291
SAI ALNCSG VLGS PIRVSPSKT
Sbjct: 257 SAIAALNCSGAVLGSLPIRVSPSKT 281
>gi|356509167|ref|XP_003523323.1| PREDICTED: uncharacterized protein LOC100787572 [Glycine max]
Length = 369
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/279 (65%), Positives = 220/279 (78%), Gaps = 18/279 (6%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHT-----DHHFSVINN-----NFADDNKQSAIDN 84
++ L ++ +KLNP+A+EF P S + H + F NN N+ + N Q+
Sbjct: 98 MRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQT---- 153
Query: 85 FNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV 144
NNRRR+N +N G++R++ + +RE+ +RRTVYVSDIDQ +TEE+LA LF +CGQVV
Sbjct: 154 --NNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVV 211
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCRVCGDP+S+LRFAFVEF DE GARAAL+L GTMLGYYP+RVLPSKTAI PVNPTFLPR
Sbjct: 212 DCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPR 271
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
SEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEFA+
Sbjct: 272 SEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVHRLRLLGDYHHSTRIAFVEFAL 330
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
AESAI AL+CSG++LGS PIRVSPSKTPVRPR RP MH
Sbjct: 331 AESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 369
>gi|226507984|ref|NP_001149092.1| LOC100282713 [Zea mays]
gi|195624680|gb|ACG34170.1| CID11 [Zea mays]
gi|414875767|tpg|DAA52898.1| TPA: CID11 [Zea mays]
Length = 299
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/287 (63%), Positives = 216/287 (75%), Gaps = 17/287 (5%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHT-----------DHHFSVINNNFADD 76
K+ E + VQKLVD+ + LNP AKEF PS D+H S+ N A D
Sbjct: 15 KEVEYQAGVQKLVDLLSNLNPAAKEFVPSAAASPPKKALSADAPVFDYH-SIGGGNGATD 73
Query: 77 NKQSAIDNFNNNRRRRNN--FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLA 134
+ F + R R N NQGR+R +GR RA REDS+RRTVYVS++D +TEERLA
Sbjct: 74 --AAFYVGFGHQPRTRGNGYINQGRRRTNGRVRRADREDSIRRTVYVSELDHTVTEERLA 131
Query: 135 GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+F++CGQVVDCR+CGDPHSVLRFAF+EF+DE GAR ALNLGGT+ G+YPVRVLPSKTAI
Sbjct: 132 DIFTTCGQVVDCRICGDPHSVLRFAFIEFSDEEGARTALNLGGTIFGFYPVRVLPSKTAI 191
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS 254
LPVNP FLPR++DE+EM RTVYCTNIDK V Q +VK+FFE C GEV+RLRLLGD+VHS
Sbjct: 192 LPVNPKFLPRTDDEKEMVMRTVYCTNIDKMVTQLDVKKFFEELC-GEVSRLRLLGDNVHS 250
Query: 255 TRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPG 301
TRIAFVEF AE AI+ALNCSGM+LG+ P+RVSPSKTPV+PRV R G
Sbjct: 251 TRIAFVEFVHAEGAIMALNCSGMILGTLPVRVSPSKTPVKPRVNRVG 297
>gi|168022364|ref|XP_001763710.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685203|gb|EDQ71600.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 166/214 (77%), Positives = 188/214 (87%), Gaps = 2/214 (0%)
Query: 91 RRNNFNQGR-KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149
++N +NQG +R++ R RAQREDS+RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVC
Sbjct: 1 KKNGYNQGNNRRVNSRTSRAQREDSIRRTVYVSDIDQQVTEEQLAALFITCGQVVDCRVC 60
Query: 150 GDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 209
GDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI+PVNPTFLPRSEDER
Sbjct: 61 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLPRSEDER 120
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
EMC+RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESA+
Sbjct: 121 EMCARTIYCTNIDKKVSQADVKLFFESLC-GEVARLRLLGDYHHSTRIAFVEFVMAESAM 179
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
ALNCSG +LGS PIRVSPSKTPVRPR R +H
Sbjct: 180 AALNCSGAILGSLPIRVSPSKTPVRPRSPRSPLH 213
>gi|147818437|emb|CAN60729.1| hypothetical protein VITISV_013180 [Vitis vinifera]
Length = 642
Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 165/203 (81%), Positives = 181/203 (89%), Gaps = 3/203 (1%)
Query: 65 HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDI 124
+F + + + S + +F + RRNN+NQGR+RLSGRAFRAQREDS+RRTVYVSDI
Sbjct: 300 YFLWLETKLSIKDGPSTLVDFID--WRRNNYNQGRRRLSGRAFRAQREDSIRRTVYVSDI 357
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYP 184
DQ++TEERLA LFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYP
Sbjct: 358 DQHVTEERLAALFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYP 417
Query: 185 VRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR 244
VRVLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNIDKKV QAEVK FFE AC GEV+R
Sbjct: 418 VRVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVSQAEVKNFFERAC-GEVSR 476
Query: 245 LRLLGDHVHSTRIAFVEFAVAES 267
LRLLGDHVHSTRIAFVEFA+ +S
Sbjct: 477 LRLLGDHVHSTRIAFVEFAMGQS 499
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RTVY ++ID+ V + + F + G+V R+ GD R AFVEFA A ALN
Sbjct: 350 RTVYVSDIDQHVTEERLAALFSSC--GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 407
Query: 274 CSGMVLGSQPIRVSPSKTPVRP 295
G +LG P+RV PSKT + P
Sbjct: 408 LGGTMLGYYPVRVLPSKTAILP 429
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 22/96 (22%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTV---QKLVDMFT--KLNPLAKEFFP 55
MAA A+M G+A A ++ N + S+SEF +VDM + KLNPLAKEFFP
Sbjct: 1 MAAGAEMSGEAVPAVPSSKNSD-------SKSEFGAGMQSMIVDMLSNLKLNPLAKEFFP 53
Query: 56 -SYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90
SY H H +I +F+ D S D + NNRR
Sbjct: 54 SSYSHDH------LIPTDFSKD---SPNDAYPNNRR 80
>gi|326502318|dbj|BAJ95222.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 317
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 188/316 (59%), Positives = 224/316 (70%), Gaps = 20/316 (6%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPS---- 56
MAAVA+ G AAA + K++E VQKLVD+ +KLNP AKEF PS
Sbjct: 1 MAAVAE--GSPAAAQAASAAAAAAAAAKEAEYHKDVQKLVDLLSKLNPAAKEFVPSSAAA 58
Query: 57 -------------YYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLS 103
YY + + + +Q NF +N RR N GR+R +
Sbjct: 59 TPRKGLSADAPVFYYGSIGGRNGGIGADAGYIGYQQRMRRNFVDNERRNGYINHGRRRTN 118
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
RA RA RE+S+RRTVYVS++D +TEERLA +F++CGQVVDCR+CGDP+SV+RFAF+EF
Sbjct: 119 ERARRADREESIRRTVYVSELDHTVTEERLAEIFANCGQVVDCRICGDPNSVMRFAFIEF 178
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
A E GARAALNLGGTMLG+YPVRVLPSKTAILPVNP FLP +EDE+EM RTVYCTNIDK
Sbjct: 179 AGEEGARAALNLGGTMLGFYPVRVLPSKTAILPVNPKFLPATEDEKEMVIRTVYCTNIDK 238
Query: 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQP 283
KV Q +VK FFE C GEV+RLRLLGD+VHSTRIAFVEF AE AI ALNCSGM+LG+ P
Sbjct: 239 KVTQLDVKSFFEELC-GEVSRLRLLGDNVHSTRIAFVEFVNAEGAIQALNCSGMILGTLP 297
Query: 284 IRVSPSKTPVRPRVTR 299
+RVSPSKTPV+PR+ R
Sbjct: 298 VRVSPSKTPVKPRLNR 313
>gi|356516142|ref|XP_003526755.1| PREDICTED: uncharacterized protein LOC100800126 [Glycine max]
Length = 369
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 185/306 (60%), Positives = 227/306 (74%), Gaps = 20/306 (6%)
Query: 11 AAAANNTNNNKNNNLETKKSESEFT--VQKLVDMFTKLNPLAKEFFP-SYYHQHT----- 62
A NN N + + F ++ L ++ +KLNP+A+EF P S + H
Sbjct: 71 ANGVNNDGYGMNGVMSEENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANTHGLLAGP 130
Query: 63 DHHFSVINN-----NFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRR 117
+ F NN N+ + N Q+ NNRRR+N +N G++R++ + +RE+ +RR
Sbjct: 131 NAGFGYTNNFILPNNYGNTNGQT------NNRRRKNGYNPGKRRMNHKMDMEKREEMIRR 184
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TVYVSDIDQ +TEE+LA LF +CGQVVDCRVCGDP+S+LRFAF+EF D+ GARAAL+L G
Sbjct: 185 TVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDDEGARAALSLSG 244
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
TMLGYYP+RVLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+
Sbjct: 245 TMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESI 304
Query: 238 CGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRV 297
C GEV RLRLLGD+ HSTRIAFVEFA+AESAI AL+CSG++LGS PIRVSPSKTPVRPR
Sbjct: 305 C-GEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRA 363
Query: 298 TRPGMH 303
RP MH
Sbjct: 364 PRPPMH 369
>gi|226530673|ref|NP_001141946.1| uncharacterized protein LOC100274095 [Zea mays]
gi|194706550|gb|ACF87359.1| unknown [Zea mays]
gi|195626910|gb|ACG35285.1| CID11 [Zea mays]
gi|413947723|gb|AFW80372.1| CID11 [Zea mays]
Length = 302
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/318 (59%), Positives = 222/318 (69%), Gaps = 35/318 (11%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA+ AAA K+ E + VQKLVD+ + LNP AKEF PS
Sbjct: 1 MAAVAEGSASAAA--------------KEVEYQAGVQKLVDLLSNLNPAAKEFVPSSAPA 46
Query: 61 HT---------------DHHFSVINNNFADDNKQSAIDNFNNNRRRRNN--FNQGRKRLS 103
D+ + N DD F N +R+R N NQGR+R +
Sbjct: 47 AAASPPKKALSADAPVFDYRSTAGGNGATDDPFYVG---FGNQQRKRGNGYINQGRRRTN 103
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
R RA REDSVRRTVYVS++D +TEERLA +F++CG VVDCR+CGDPHSVLRFAF+EF
Sbjct: 104 DRLRRADREDSVRRTVYVSELDHTVTEERLADIFATCGHVVDCRICGDPHSVLRFAFIEF 163
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
+DE GAR ALNLGGT+ G+YPVRVLPSKTAILPVNP FLPR++DE+EM RTVYCTNIDK
Sbjct: 164 SDEEGARTALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTDDEKEMVMRTVYCTNIDK 223
Query: 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQP 283
V Q +VK+FFE C GEV+RLRLLGD+VHSTRIAFVEF AE AI+ALNCSGM+LG+ P
Sbjct: 224 MVTQLDVKKFFEELC-GEVSRLRLLGDNVHSTRIAFVEFVHAEGAIMALNCSGMILGTLP 282
Query: 284 IRVSPSKTPVRPRVTRPG 301
+RVSPSKTPV+PRV R G
Sbjct: 283 VRVSPSKTPVKPRVNRMG 300
>gi|357127346|ref|XP_003565343.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Brachypodium distachyon]
Length = 310
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/276 (63%), Positives = 207/276 (75%), Gaps = 13/276 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSV------------INNNFADDNKQSAID 83
VQKLVD+ + LNP A+EF PS + S N D S
Sbjct: 32 VQKLVDLLSNLNPAAREFVPSSAAPPSKKALSADAPVFDYCSIGGANGGSRDSGVDSTYI 91
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV 143
++ R N GR+R++ RA RA REDS+RRTVYVS++D +TEERLA +F++CGQV
Sbjct: 92 GNQQHKMRSGYINHGRRRMNERARRADREDSIRRTVYVSELDHTVTEERLADIFANCGQV 151
Query: 144 VDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
VDCR+CGDPHSVLRFAF+EF+DE GARAALNLGGTMLG+YPVRVLPSKTAILPVNP FLP
Sbjct: 152 VDCRICGDPHSVLRFAFIEFSDEEGARAALNLGGTMLGFYPVRVLPSKTAILPVNPKFLP 211
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA 263
R+EDE+EM RT+YCTNIDKKV Q +VK FF+ C GEV+RLRLLGD+VHSTRIAFVEF
Sbjct: 212 RTEDEKEMVIRTIYCTNIDKKVTQLDVKSFFQELC-GEVSRLRLLGDNVHSTRIAFVEFV 270
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
AE AI+ALNCSGM+LG+ P+RVSPSKTPV+PR+ R
Sbjct: 271 NAEGAIMALNCSGMILGTLPVRVSPSKTPVKPRINR 306
>gi|297809287|ref|XP_002872527.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
gi|297318364|gb|EFH48786.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
Length = 336
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/274 (63%), Positives = 213/274 (77%), Gaps = 9/274 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFVPPSLTKPVVNGFN--GGFFAVNNGFGAAGNFPVNEDGGFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GARAAL+L GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARAALSLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
MC+RT+YCTNIDKK+ QA++K FFE+ C GEV RLRLLGD+ H TRI FVEF +AESAI
Sbjct: 244 MCARTIYCTNIDKKLTQADIKLFFESVC-GEVYRLRLLGDYHHPTRIGFVEFVMAESAIA 302
Query: 271 ALNCSGMVLGSQPIRVSPSKTPVRPR-VTRPGMH 303
ALNCSG++LGS PIRVSPSKTPVR R V R MH
Sbjct: 303 ALNCSGVLLGSLPIRVSPSKTPVRSRAVPRHQMH 336
>gi|326514092|dbj|BAJ92196.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532980|dbj|BAJ89335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/305 (60%), Positives = 215/305 (70%), Gaps = 33/305 (10%)
Query: 31 ESEFTVQKLVDMFTKLNPLAKEFFP------------------------SYY-----HQH 61
E + V+KL ++F KLNP A+EF P YY QH
Sbjct: 48 EYKSDVRKLEELFKKLNPSAEEFVPLSRRQGDGARRLSADAPVFVSPAIDYYAPHHPFQH 107
Query: 62 TDHHFSVINNNFADDNKQSAIDNFNN---NRRRRNNFNQGRKRLSGRAFRAQREDSVRRT 118
H + + S+ D N NRRRRN FNQGR+R+ R R REDSVRRT
Sbjct: 108 QQMHVLQVVGGGGGAGRDSSSDGSANGQPNRRRRNGFNQGRRRMGVRPRRTDREDSVRRT 167
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGT 178
VYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SV+RFAF+EFAD+ GARAAL LGGT
Sbjct: 168 VYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDVGARAALALGGT 227
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
+LG+YPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK VP+ VK FFE C
Sbjct: 228 VLGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKNFFEGIC 287
Query: 239 GGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVT 298
GEV RLRLLGD+VH+T IAFVEF AE AILALNCSGM+LGS P+RVSPSKTPVRPR
Sbjct: 288 -GEVARLRLLGDYVHATCIAFVEFVEAEGAILALNCSGMLLGSLPVRVSPSKTPVRPRSP 346
Query: 299 RPGMH 303
R H
Sbjct: 347 RVVSH 351
>gi|15235177|ref|NP_192799.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
gi|4115925|gb|AAD03436.1| contains similarity to RNA recognition motifs (Pfam: PF00076,
Score=5.5e-23, N=2) [Arabidopsis thaliana]
gi|4539439|emb|CAB40027.1| RNA-binding protein [Arabidopsis thaliana]
gi|4959384|gb|AAD34325.1| RNA-binding protein [Arabidopsis thaliana]
gi|7267758|emb|CAB78184.1| RNA-binding protein [Arabidopsis thaliana]
gi|14517528|gb|AAK62654.1| AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|18700204|gb|AAL77712.1| AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|21592407|gb|AAM64358.1| RNA-binding protein [Arabidopsis thaliana]
gi|332657507|gb|AEE82907.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
Length = 336
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 211/274 (77%), Gaps = 9/274 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
MC+RT+YCTNIDKK+ Q ++K FFE+ C GEV RLRLLGD+ H TRI FVEF +AESAI
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVC-GEVYRLRLLGDYHHPTRIGFVEFVMAESAIA 302
Query: 271 ALNCSGMVLGSQPIRVSPSKTPVRPR-VTRPGMH 303
ALNCSG++LGS PIRVSPSKTPVR R + R MH
Sbjct: 303 ALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
>gi|50725622|dbj|BAD33089.1| putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]
gi|182375457|dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group]
gi|215736921|dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639804|gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza sativa Japonica Group]
Length = 302
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 204/282 (72%), Gaps = 12/282 (4%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------SYYHQHTDHHFSVINNNFADDNKQSA 81
E ++ L D+ +KLNP+A+EF P +YY T H + A +
Sbjct: 22 EREMRDLEDLLSKLNPMAEEFVPPSLAAASPTAYAYYPTPTPSHVFPAVDGLAGPRPRKK 81
Query: 82 IDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
+ G++R++ R AQR++ +RRTVYVSDID +TEE+LA LF +CG
Sbjct: 82 GGGGGGGGGFGGQGHAGKRRMNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCG 141
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCR+CGDP+SVLRFAF+EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTF
Sbjct: 142 QVVDCRMCGDPNSVLRFAFIEFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTF 201
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVE 261
LPRS+DEREMC+RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVE
Sbjct: 202 LPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESIC-GEVYRLRLLGDYHHSTRIAFVE 260
Query: 262 FAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
F +AESA ALNCSG++LGS PIRVSPSKTPVRPR R MH
Sbjct: 261 FVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 302
>gi|357124236|ref|XP_003563809.1| PREDICTED: uncharacterized protein LOC100835921 [Brachypodium
distachyon]
Length = 351
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/311 (58%), Positives = 218/311 (70%), Gaps = 35/311 (11%)
Query: 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH-----------------TDHH--- 65
E + E + V+KL ++F KLNP A+EF P Q D++
Sbjct: 43 EDEVREYKSDVRKLEELFKKLNPSAEEFVPLSRRQADGGRRLSADAPVFVSPAIDYYAPH 102
Query: 66 -------------FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQRE 112
V+ D + ++ N NRRRRN FNQGR+R+ R R RE
Sbjct: 103 HPFQQQQPQQMHVLQVVGGGGRDSSSDGSV-NGQPNRRRRNGFNQGRRRMGPRPRRTDRE 161
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
DSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SV+RFAF+EFAD+ GARAA
Sbjct: 162 DSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDVGARAA 221
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+L GT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK VP+ VK+
Sbjct: 222 LSLAGTILGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKK 281
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
FFE C GEV RLRLLGD+VHST IAFVEF AE AI+ALNCSGM+LGS P+RVSPSKTP
Sbjct: 282 FFEGIC-GEVARLRLLGDYVHSTCIAFVEFVQAEGAIMALNCSGMLLGSLPVRVSPSKTP 340
Query: 293 VRPRVTRPGMH 303
VRPR R H
Sbjct: 341 VRPRSPRAMSH 351
>gi|1174153|gb|AAA86641.1| RNA-binding protein [Arabidopsis thaliana]
Length = 336
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 210/274 (76%), Gaps = 9/274 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDI Q +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIYQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
MC+RT+YCTNIDKK+ Q ++K FFE+ C GEV RLRLLGD+ H TRI FVEF +AESAI
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVC-GEVYRLRLLGDYHHPTRIGFVEFVMAESAIG 302
Query: 271 ALNCSGMVLGSQPIRVSPSKTPVRPR-VTRPGMH 303
ALNCSG++LGS PIRVSPSKTPVR R + R MH
Sbjct: 303 ALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
>gi|110737686|dbj|BAF00782.1| RNA-binding - like protein [Arabidopsis thaliana]
Length = 353
Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 212/285 (74%), Gaps = 16/285 (5%)
Query: 18 NNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS---VINNNFA 74
N ++NN E ++ L D F+KLNP+A+EF P + NNFA
Sbjct: 78 NGERDNNGE---------IKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGLGFTNNFA 128
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLA 134
K + D ++ RRR +F QG++R++ R AQ++D +RRTVYVSDIDQ +TEE LA
Sbjct: 129 APPKLA--DGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLA 186
Query: 135 GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
G+F +CGQVVDCRVCGDP+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKTAI
Sbjct: 187 GVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAI 246
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS 254
PVNPTFLPRSEDEREMC RTVYCTNIDK++ Q ++K FFE C GEV RLR LGD+ H
Sbjct: 247 APVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMPC-GEVHRLR-LGDYHHQ 304
Query: 255 TRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
TRIAFVEFA+AESAI AL+CSG+VLG+ PIRVSPSKTPVRP R
Sbjct: 305 TRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
>gi|15229132|ref|NP_190508.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|79314662|ref|NP_001030833.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|12324442|gb|AAG52182.1|AC012329_9 putative RNA-binding protein; 38450-35693 [Arabidopsis thaliana]
gi|6723409|emb|CAB66418.1| RNA-binding-like protein [Arabidopsis thaliana]
gi|222424104|dbj|BAH20012.1| AT3G49390 [Arabidopsis thaliana]
gi|332645014|gb|AEE78535.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|332645015|gb|AEE78536.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
Length = 353
Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 212/285 (74%), Gaps = 16/285 (5%)
Query: 18 NNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS---VINNNFA 74
N ++NN E ++ L D F+KLNP+A+EF P + NNFA
Sbjct: 78 NGERDNNGE---------IKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGLGFTNNFA 128
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLA 134
K + D ++ RRR +F QG++R++ R AQ++D +RRTVYVSDIDQ +TEE LA
Sbjct: 129 APPKLA--DGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLA 186
Query: 135 GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
G+F +CGQVVDCRVCGDP+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKTAI
Sbjct: 187 GVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAI 246
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS 254
PVNPTFLPRSEDEREMC RTVYCTNIDK++ Q ++K FFE C GEV RLR LGD+ H
Sbjct: 247 APVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLC-GEVHRLR-LGDYHHQ 304
Query: 255 TRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
TRIAFVEFA+AESAI AL+CSG+VLG+ PIRVSPSKTPVRP R
Sbjct: 305 TRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
>gi|388492572|gb|AFK34352.1| unknown [Medicago truncatula]
Length = 376
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/290 (60%), Positives = 214/290 (73%), Gaps = 25/290 (8%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP-------SYYHQHTDHHFS----- 67
N N E+ K E ++ L ++ +KLNP+A+EF P Y F
Sbjct: 93 NGENGGESFKRE----MRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNF 148
Query: 68 VINNNFADDNKQSAIDNFNNNRRRRNNFN-QGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
++ NN+A+ N Q+ NRRR+N + G++R + + +RE+ +RRTVY SDIDQ
Sbjct: 149 ILLNNYANANGQT-------NRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYASDIDQ 201
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE+LA LF +CGQVVDCRVC DP+S+LRFAF+EF DE ARAA++L GTMLGYYP+R
Sbjct: 202 LVTEEQLASLFLNCGQVVDCRVCRDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLR 261
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246
VLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV RLR
Sbjct: 262 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVHRLR 320
Query: 247 LLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPR 296
LLGD+ HSTRIAFVEFAVAESAI AL+CSG++LG+ PIRVSPSKTPVR R
Sbjct: 321 LLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVRAR 370
>gi|297819578|ref|XP_002877672.1| hypothetical protein ARALYDRAFT_485298 [Arabidopsis lyrata subsp.
lyrata]
gi|297323510|gb|EFH53931.1| hypothetical protein ARALYDRAFT_485298 [Arabidopsis lyrata subsp.
lyrata]
Length = 351
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/287 (60%), Positives = 213/287 (74%), Gaps = 16/287 (5%)
Query: 16 NTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS---VINNN 72
N N ++NN E ++ L D F+KLNP+A+EF P + F NN
Sbjct: 74 NRNGERDNNGE---------IKDLADAFSKLNPMAQEFVPPSLARSQSGVFRNGLGFTNN 124
Query: 73 FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEER 132
FA K + D ++ RR +F QG++R++ R AQ++D +RRTVYVSDIDQ +TEE
Sbjct: 125 FAAPPKLA--DGNDHFPTRRRSFGQGKRRINKRTSLAQKDDVIRRTVYVSDIDQQVTEEN 182
Query: 133 LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
LAG+F +CGQVVDCRVCGDP+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKT
Sbjct: 183 LAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKT 242
Query: 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV 252
AI PVNPTFLPRSEDEREMC RTVYCTNIDK++ Q ++K FFE C GEV RLR LGD+
Sbjct: 243 AIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKVFFEMLC-GEVHRLR-LGDYH 300
Query: 253 HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
H TRIAFVEFA+AESAI AL+CSG+VLG+ PIRVSPSKTPVRP R
Sbjct: 301 HQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 347
>gi|115445273|ref|NP_001046416.1| Os02g0244600 [Oryza sativa Japonica Group]
gi|50252270|dbj|BAD28276.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113535947|dbj|BAF08330.1| Os02g0244600 [Oryza sativa Japonica Group]
Length = 359
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/213 (79%), Positives = 188/213 (88%), Gaps = 1/213 (0%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRR+ FNQGR+R GR RA REDSVRRTVYVSDIDQ +TE++LA +FS+CGQVVDC
Sbjct: 144 QNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDC 203
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EFAD+ GARAAL LGGTMLGYYPVRVLPSKTAILPVNP FLPR+E
Sbjct: 204 RICGDPHSVLRFAFIEFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTE 263
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DE+EM SRTVYCTNIDKKV + +VK FF+ C G+V+RLRLLGD+VHST IAFVEFA AE
Sbjct: 264 DEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLC-GKVSRLRLLGDYVHSTCIAFVEFAQAE 322
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
SAILALN SGMVLG+ PIRVSPSKTPVRPR R
Sbjct: 323 SAILALNYSGMVLGTLPIRVSPSKTPVRPRSPR 355
>gi|125581461|gb|EAZ22392.1| hypothetical protein OsJ_06050 [Oryza sativa Japonica Group]
Length = 299
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/213 (79%), Positives = 188/213 (88%), Gaps = 1/213 (0%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRR+ FNQGR+R GR RA REDSVRRTVYVSDIDQ +TE++LA +FS+CGQVVDC
Sbjct: 84 QNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDC 143
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EFAD+ GARAAL LGGTMLGYYPVRVLPSKTAILPVNP FLPR+E
Sbjct: 144 RICGDPHSVLRFAFIEFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTE 203
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DE+EM SRTVYCTNIDKKV + +VK FF+ C G+V+RLRLLGD+VHST IAFVEFA AE
Sbjct: 204 DEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLC-GKVSRLRLLGDYVHSTCIAFVEFAQAE 262
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
SAILALN SGMVLG+ PIRVSPSKTPVRPR R
Sbjct: 263 SAILALNYSGMVLGTLPIRVSPSKTPVRPRSPR 295
>gi|218190389|gb|EEC72816.1| hypothetical protein OsI_06525 [Oryza sativa Indica Group]
Length = 287
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/213 (79%), Positives = 188/213 (88%), Gaps = 1/213 (0%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRR+ FNQGR+R GR RA REDSVRRTVYVSDIDQ +TE++LA +FS+CGQVVDC
Sbjct: 72 QNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDC 131
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EFAD+ GARAAL LGGTMLGYYPVRVLPSKTAILPVNP FLPR+E
Sbjct: 132 RICGDPHSVLRFAFIEFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTE 191
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DE+EM SRTVYCTNIDKKV + +VK FF+ C G+V+RLRLLGD+VHST IAFVEFA AE
Sbjct: 192 DEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLC-GKVSRLRLLGDYVHSTCIAFVEFAQAE 250
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
SAILALN SGMVLG+ PIRVSPSKTPVRPR R
Sbjct: 251 SAILALNYSGMVLGTLPIRVSPSKTPVRPRSPR 283
>gi|218200388|gb|EEC82815.1| hypothetical protein OsI_27601 [Oryza sativa Indica Group]
Length = 277
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 201/282 (71%), Gaps = 37/282 (13%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------SYYHQHTDHHFSVINNNFADDNKQSA 81
E ++ L D+ +KLNP+A+EF P +YY T H
Sbjct: 22 EREMRDLEDLLSKLNPMAEEFVPPSLAAASPTAYAYYPTPTPSHVFPAG----------- 70
Query: 82 IDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
+ G++R++ R AQR++ +RRTVYVSDID +TEE+LA LF +CG
Sbjct: 71 --------------HAGKRRMNRRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCG 116
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCR+CGDP+SVLRFAF+EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTF
Sbjct: 117 QVVDCRMCGDPNSVLRFAFIEFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTF 176
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVE 261
LPRS+DEREMC+RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVE
Sbjct: 177 LPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESIC-GEVYRLRLLGDYHHSTRIAFVE 235
Query: 262 FAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
F +AESA ALNCSG++LGS PIRVSPSKTPVRPR R MH
Sbjct: 236 FVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 277
>gi|357464151|ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
gi|355491405|gb|AES72608.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
Length = 384
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 176/298 (59%), Positives = 216/298 (72%), Gaps = 33/298 (11%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP-------SYYHQHTDHHFS----- 67
N N E+ K E ++ L ++ +KLNP+A+EF P Y F
Sbjct: 93 NGENGGESFKRE----MRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNF 148
Query: 68 VINNNFADDNKQSAIDNFNNNRRRRNNFN-QGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
++ NN+A+ N Q+ NRRR+N + G++R + + +RE+ +RRTVYVSDIDQ
Sbjct: 149 ILLNNYANANGQT-------NRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQ 201
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE+LA LF +CGQVVDCRVCGDP+S+LRFAF+EF DE ARAA++L GTMLGYYP+R
Sbjct: 202 LVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLR 261
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246
VLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV RLR
Sbjct: 262 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVHRLR 320
Query: 247 LLGDHVHSTRIAFVEFAV--------AESAILALNCSGMVLGSQPIRVSPSKTPVRPR 296
LLGD+ HSTRIAFVEFAV AESAI AL+CSG++LG+ PIRVSPSKTPVR R
Sbjct: 321 LLGDYQHSTRIAFVEFAVIFFASFFQAESAIAALSCSGVILGALPIRVSPSKTPVRAR 378
>gi|218198344|gb|EEC80771.1| hypothetical protein OsI_23281 [Oryza sativa Indica Group]
Length = 372
Score = 332 bits (852), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 220/325 (67%), Gaps = 45/325 (13%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP------------------------- 55
K+ E ++ +S+ +KL ++F KLNP A+EF P
Sbjct: 51 KDGGEEVREYKSD--ARKLEELFKKLNPSAEEFVPLARRRGGGDGARRLSADAPVFVSPA 108
Query: 56 -SYYHQHTDHHFSVIN---------NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR 105
+Y QH I D+ N NRRRR++FNQGR+R+ GR
Sbjct: 109 IDFYSQHPVQQPPPIQVLPVVVGGGGGAGLDSSSDGSTNGQPNRRRRSSFNQGRRRMGGR 168
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
R REDSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SVLRFAF+EFAD
Sbjct: 169 PRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFAD 228
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GARAAL LGGT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK V
Sbjct: 229 DVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNV 288
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
P+ VK FFE C GEV RLRLLGD+VHST IAFVEF A+SAILAL+CSGMVLG+ P+R
Sbjct: 289 PEDAVKSFFEGMC-GEVARLRLLGDYVHSTCIAFVEFVQADSAILALSCSGMVLGALPVR 347
Query: 286 -------VSPSKTPVRPRVTRPGMH 303
VSPSKTPVRPR R H
Sbjct: 348 QANTPYAVSPSKTPVRPRSPRVTSH 372
>gi|79319100|ref|NP_001031131.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
gi|332193409|gb|AEE31530.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
Length = 406
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/262 (62%), Positives = 201/262 (76%), Gaps = 12/262 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVI----------NNNFADDNKQSAIDNF 85
+++L ++F+KLNP+A+EF P ++ + + NN FA +
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNEN 142
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
RR+++ F QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVD
Sbjct: 143 GGFRRKKS-FGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
EDEREMC+RT+YCTNIDKKV Q++VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +A
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFC-GEVYRLRLLGDYQHSTRIAFVEFVMA 320
Query: 266 ESAILALNCSGMVLGSQPIRVS 287
ESAI ALNCSG+VLGS PIR S
Sbjct: 321 ESAIAALNCSGVVLGSLPIRSS 342
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RTVY +++D++V + ++ F +CG +V R+ GD R AF+EF E A+ ALN
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLF-VSCG-QVVDCRICGDPNSVLRFAFIEFTDEEGAMTALN 230
Query: 274 CSGMVLGSQPIRVSPSKTPVRP 295
SG +LG P++V PSKT + P
Sbjct: 231 LSGTMLGFYPVKVLPSKTAIAP 252
>gi|147803358|emb|CAN68836.1| hypothetical protein VITISV_026310 [Vitis vinifera]
Length = 195
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 158/195 (81%), Positives = 173/195 (88%), Gaps = 1/195 (0%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQRE+ ++RTVYVSDIDQ +TEE LA LF +CGQVVDCR+CGDP+SVLRFAFVEF DE G
Sbjct: 2 AQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDEEG 61
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPRSEDEREMC+RT+YCTNIDKKV QA
Sbjct: 62 ARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQA 121
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
EVK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESAI ALNCSG +LGS PIRVSP
Sbjct: 122 EVKLFFESIC-GEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSP 180
Query: 289 SKTPVRPRVTRPGMH 303
SKTPVRPR RP +H
Sbjct: 181 SKTPVRPRAPRPALH 195
>gi|62867578|emb|CAI84654.1| hypothetical protein [Nicotiana tabacum]
Length = 201
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 157/202 (77%), Positives = 181/202 (89%), Gaps = 1/202 (0%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ RA++AQREDS+RRTVYV++ID N+TEE+LA LFS+ GQVVDCR+CGDPHS LRFAFV
Sbjct: 1 MNNRAYKAQREDSIRRTVYVAEIDNNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFV 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EFADE+ ARAAL+L GT+LG+ P++VLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNI
Sbjct: 61 EFADEYSARAALSLCGTILGFSPLKVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS 281
DKKV QA+VK FFE C GEV+RLRLLGDHVHSTRIAFVEF +AESAILAL+C G +LGS
Sbjct: 121 DKKVTQADVKNFFETRC-GEVSRLRLLGDHVHSTRIAFVEFVMAESAILALDCCGEILGS 179
Query: 282 QPIRVSPSKTPVRPRVTRPGMH 303
Q IRVSPSKTPVRPR+ R M
Sbjct: 180 QRIRVSPSKTPVRPRLPRAMMQ 201
>gi|297851722|ref|XP_002893742.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
lyrata]
gi|297339584|gb|EFH70001.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
lyrata]
Length = 409
Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 168/271 (61%), Positives = 203/271 (74%), Gaps = 22/271 (8%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNR----- 89
+++L ++F+KLNP+A+EF P S Q + + +N F SA F NN
Sbjct: 86 MRELQELFSKLNPMAEEFVPPSLTKQGGNGGLNGVNGGFF----TSAGSFFRNNGFSGTG 141
Query: 90 -----------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
RR+ +F QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF
Sbjct: 142 NGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFV 201
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
SCGQVVDCR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVN
Sbjct: 202 SCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVN 261
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIA 258
PTFLPR+EDEREMC+RT+YCTNIDKKV Q++VK FFE+ C GEV RLRLLGD+ HSTRIA
Sbjct: 262 PTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFC-GEVYRLRLLGDYQHSTRIA 320
Query: 259 FVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
FVEF +AESAI ALNCSG+VLGS PIR S
Sbjct: 321 FVEFVMAESAIAALNCSGVVLGSLPIRSGES 351
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RTVY +++D++V + ++ F +CG +V R+ GD R AF+EF E A+ ALN
Sbjct: 180 RTVYVSDLDQQVTEEQLAGLF-VSCG-QVVDCRICGDPNSVLRFAFIEFTDEEGAMTALN 237
Query: 274 CSGMVLGSQPIRVSPSKTPVRP 295
SG +LG P++V PSKT + P
Sbjct: 238 LSGTMLGFYPVKVLPSKTAIAP 259
>gi|224028543|gb|ACN33347.1| unknown [Zea mays]
gi|413941691|gb|AFW74340.1| CID11 [Zea mays]
Length = 328
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 171/297 (57%), Positives = 204/297 (68%), Gaps = 27/297 (9%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------------SYYHQHTDHHFSVINNN--- 72
E ++ L D+ +KLNP+A+EF P +Y F+V +
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAGFAVASPGHGG 92
Query: 73 ------FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
AD + + + R+R + R AQR++ +RRTVYVSDID
Sbjct: 93 VVGFPAVADAHAARGRKKGGAGGGFSGHGHPARRRTNSRTSMAQRDEIIRRTVYVSDIDH 152
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVR
Sbjct: 153 QVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVR 212
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ C GEV RLR
Sbjct: 213 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESIC-GEVFRLR 271
Query: 247 LLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
LLGD+ HSTRIAFVEF +AESA ALNCSG++LGS PIRVSPSKTPVRPR R MH
Sbjct: 272 LLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 328
>gi|226529745|ref|NP_001150079.1| CID11 [Zea mays]
gi|195636508|gb|ACG37722.1| CID11 [Zea mays]
Length = 328
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/297 (57%), Positives = 205/297 (69%), Gaps = 27/297 (9%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------------SYYHQHTDHHFSVINNN--- 72
E ++ L D+ +KLNP+A+EF P +Y F+V +
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAGFAVASPGHGG 92
Query: 73 ------FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
AD + + + GR+R + R AQR++ +RRTVYVSDID
Sbjct: 93 VVGFPAVADAHAARGRKKGGAGGGFSGHGHPGRRRTNSRTSMAQRDEIIRRTVYVSDIDH 152
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVR
Sbjct: 153 QVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVR 212
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ C GEV RLR
Sbjct: 213 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESIC-GEVFRLR 271
Query: 247 LLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
LLGD+ HSTRIAFVEF +AESA ALNCSG++LGS PIRVSPSKTPVRPR R MH
Sbjct: 272 LLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 328
>gi|14030687|gb|AAK53018.1|AF375434_1 At1g32790 [Arabidopsis thaliana]
gi|25090128|gb|AAN72236.1| At1g32790/F6N18_9 [Arabidopsis thaliana]
Length = 201
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 155/202 (76%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVDCR+CGDP+SVLRFAF+
Sbjct: 1 MNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+EDE EMC+RT+YCTNI
Sbjct: 61 EFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDESEMCARTIYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS 281
DKKV Q++VK FFE C GEV RLRLLGD+ HSTRIAFVEF +AESAI ALNCSG+VLGS
Sbjct: 121 DKKVTQSDVKIFFEYFC-GEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGS 179
Query: 282 QPIRVSPSKTPVRPRVTRPGMH 303
PIRVSPSKTPVRPR R MH
Sbjct: 180 LPIRVSPSKTPVRPRSPRHPMH 201
>gi|357139501|ref|XP_003571320.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Brachypodium distachyon]
Length = 328
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/206 (74%), Positives = 179/206 (86%), Gaps = 1/206 (0%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157
G++R++ R +AQR++ +RRTVYVSDID +TEE+LA LF + GQVVDCR+CGDP+SVLR
Sbjct: 124 GKRRVNSRTSQAQRDEVIRRTVYVSDIDHQVTEEQLAALFINVGQVVDCRMCGDPNSVLR 183
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FAF+EF DE GARAAL L GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+Y
Sbjct: 184 FAFIEFTDEEGARAALTLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIY 243
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGM 277
CTNID+KV QA+VK FFE+ C GEV RLRLLGD+ H+TRIAFVEF +AESA ALNCSG+
Sbjct: 244 CTNIDRKVSQADVKLFFESIC-GEVYRLRLLGDYQHNTRIAFVEFVMAESATAALNCSGV 302
Query: 278 VLGSQPIRVSPSKTPVRPRVTRPGMH 303
+LGS PIRVSPSKTPVRPR RP MH
Sbjct: 303 ILGSLPIRVSPSKTPVRPRAPRPLMH 328
>gi|115474513|ref|NP_001060853.1| Os08g0116400 [Oryza sativa Japonica Group]
gi|113622822|dbj|BAF22767.1| Os08g0116400, partial [Oryza sativa Japonica Group]
Length = 283
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 154/205 (75%), Positives = 177/205 (86%), Gaps = 1/205 (0%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
++R++ R AQR++ +RRTVYVSDID +TEE+LA LF +CGQVVDCR+CGDP+SVLRF
Sbjct: 80 KRRMNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRF 139
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
AF+EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YC
Sbjct: 140 AFIEFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYC 199
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMV 278
TNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESA ALNCSG++
Sbjct: 200 TNIDKKVSQADVKLFFESIC-GEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVI 258
Query: 279 LGSQPIRVSPSKTPVRPRVTRPGMH 303
LGS PIRVSPSKTPVRPR R MH
Sbjct: 259 LGSLPIRVSPSKTPVRPRAPRQLMH 283
>gi|357140847|ref|XP_003571974.1| PREDICTED: uncharacterized protein LOC100841044 [Brachypodium
distachyon]
Length = 350
Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 181/294 (61%), Positives = 212/294 (72%), Gaps = 31/294 (10%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHT----------DHHFSVINNNF------------ 73
++KL ++ +KLNP A+EF PS + D V F
Sbjct: 54 MRKLEELMSKLNPCAQEFVPSSRRAASAPAPGGGLSADAPVFVSAAEFFGAGAGQLQGTG 113
Query: 74 -------ADDNKQSAIDNFNNNRRRRN-NFNQGRKRLSGRAFRAQREDSVRRTVYVSDID 125
+ D + N R RRN +FNQGR+R+ GR R+ REDSVRRTVYVSD+D
Sbjct: 114 AGGGRDSSSDGSSNGGGQPQNRRIRRNGSFNQGRRRMGGRTRRSDREDSVRRTVYVSDVD 173
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185
Q +TE++LA +FS+CGQVVDCR+CGDPHSVLRFAF+EFAD+ GARAALNL GTMLGYYPV
Sbjct: 174 QQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFADDAGARAALNLAGTMLGYYPV 233
Query: 186 RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL 245
RVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDKKV + +VK FF+ C G+V+RL
Sbjct: 234 RVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEDDVKIFFQRLC-GKVSRL 292
Query: 246 RLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
RLLGD+VHST IAFVEF AESAILALN SG+VLGS PIRVSPSKTPVRPR R
Sbjct: 293 RLLGDYVHSTCIAFVEFTQAESAILALNYSGLVLGSLPIRVSPSKTPVRPRSPR 346
>gi|242093252|ref|XP_002437116.1| hypothetical protein SORBIDRAFT_10g021290 [Sorghum bicolor]
gi|241915339|gb|EER88483.1| hypothetical protein SORBIDRAFT_10g021290 [Sorghum bicolor]
Length = 364
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/217 (75%), Positives = 190/217 (87%), Gaps = 2/217 (0%)
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFR-AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ 142
N NRRRRN F QGR+R+ G R + REDSVRRTVYVSDIDQ++TE++LA +FS+CGQ
Sbjct: 145 NGQPNRRRRNGFIQGRRRMMGGRPRRSDREDSVRRTVYVSDIDQHVTEQKLAEVFSTCGQ 204
Query: 143 VVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
VVDCR+CGDP+SVLRFAF+EFAD+ GA+AAL LGGT+LG+YPV+VLPSKTAILPVNP FL
Sbjct: 205 VVDCRICGDPNSVLRFAFIEFADDVGAQAALALGGTVLGFYPVKVLPSKTAILPVNPKFL 264
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
PR+EDE+EM SRTVYCTNIDKK+ + EVKQFFE C GEV+RLRLLGD+VHST IAFVEF
Sbjct: 265 PRTEDEKEMVSRTVYCTNIDKKIGEDEVKQFFEGTC-GEVSRLRLLGDYVHSTCIAFVEF 323
Query: 263 AVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
A+SAILALNCSG+VLG+ P+RVSPSKTPVRPR R
Sbjct: 324 VQADSAILALNCSGIVLGTLPVRVSPSKTPVRPRSPR 360
>gi|242080315|ref|XP_002444926.1| hypothetical protein SORBIDRAFT_07g001560 [Sorghum bicolor]
gi|241941276|gb|EES14421.1| hypothetical protein SORBIDRAFT_07g001560 [Sorghum bicolor]
Length = 348
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/205 (75%), Positives = 176/205 (85%), Gaps = 1/205 (0%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
R+R + R AQR++ +RRTVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRF
Sbjct: 145 RRRTNSRTSMAQRDEVIRRTVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRF 204
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
AF+EF DE GARAALNL GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YC
Sbjct: 205 AFIEFTDEEGARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYC 264
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMV 278
TNIDKKV QA++K FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESA ALNCSG++
Sbjct: 265 TNIDKKVTQADLKLFFESIC-GEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVI 323
Query: 279 LGSQPIRVSPSKTPVRPRVTRPGMH 303
LGS PIRVSPSKTPVRPR R MH
Sbjct: 324 LGSLPIRVSPSKTPVRPRAPRQLMH 348
>gi|326514404|dbj|BAJ96189.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/302 (55%), Positives = 205/302 (67%), Gaps = 29/302 (9%)
Query: 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH------------------------ 61
E E ++ L ++ +KLNP+A+EF P H
Sbjct: 28 EEGGDAGEREMRDLEELLSKLNPMAEEFVPPSLAAHPMPPPPYAGYYPNGPPAAGFAPVA 87
Query: 62 TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYV 121
+ H V+ AD + + G++R++ R +AQR++ +RRTVYV
Sbjct: 88 SPGHRGVVGFPAADGRGRKKFGGGYGG----GYPHGGKRRVNSRTSQAQRDEVIRRTVYV 143
Query: 122 SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLG 181
SDID +TEE+LA LF + GQVVDCR+CGDP+SVLRFAF+EF DE GARAAL L GT+LG
Sbjct: 144 SDIDHQVTEEQLAALFINVGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALTLSGTVLG 203
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGE 241
YYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA+VK FFE+ C GE
Sbjct: 204 YYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESIC-GE 262
Query: 242 VTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPG 301
V RLRLLGD+ H+TRIAFVEF +AESA ALNCSG++LGS PIRVSP KTPVRPR RP
Sbjct: 263 VYRLRLLGDYQHNTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPFKTPVRPRAPRPM 322
Query: 302 MH 303
M+
Sbjct: 323 MN 324
>gi|50725623|dbj|BAD33090.1| putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]
Length = 201
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/202 (75%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ R AQR++ +RRTVYVSDID +TEE+LA LF +CGQVVDCR+CGDP+SVLRFAF+
Sbjct: 1 MNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNI
Sbjct: 61 EFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS 281
DKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +AESA ALNCSG++LGS
Sbjct: 121 DKKVSQADVKLFFESIC-GEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVILGS 179
Query: 282 QPIRVSPSKTPVRPRVTRPGMH 303
PIRVSPSKTPVRPR R MH
Sbjct: 180 LPIRVSPSKTPVRPRAPRQLMH 201
>gi|79325059|ref|NP_001031614.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
gi|332657508|gb|AEE82908.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
Length = 326
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/255 (61%), Positives = 197/255 (77%), Gaps = 8/255 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
MC+RT+YCTNIDKK+ Q ++K FFE+ C GEV RLRLLGD+ H TRI FVEF +AESAI
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVC-GEVYRLRLLGDYHHPTRIGFVEFVMAESAIA 302
Query: 271 ALNCSGMVLGSQPIR 285
ALNCSG++LGS PIR
Sbjct: 303 ALNCSGVLLGSLPIR 317
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E+ RTVY ++ID++V + ++ F G+V R+ GD R AF+EF A
Sbjct: 146 EIIRRTVYVSDIDQQVTEEQLAGLFIGF--GQVVDCRICGDPNSVLRFAFIEFTDEVGAR 203
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRP 295
ALN SG +LG P++V PSKT + P
Sbjct: 204 TALNLSGTMLGFYPVKVMPSKTAIAP 229
>gi|308081540|ref|NP_001182915.1| uncharacterized protein LOC100501201 [Zea mays]
gi|238008164|gb|ACR35117.1| unknown [Zea mays]
gi|413921443|gb|AFW61375.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 342
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/302 (55%), Positives = 204/302 (67%), Gaps = 36/302 (11%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNFA 74
E ++ L D+ +KLNP+A+EF P + F +N FA
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 75 DDNKQ-------SAIDNFNNNRRRRNNFNQGRKRL----------SGRAFRAQREDSVRR 117
+ A+ + + R + + G + R AQR++++RR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL G
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSG 216
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
T+LGYYPV+VLPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 217 TVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESI 276
Query: 238 CGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRV 297
C GEV RLRLLGD+ HSTRIAFVEF +AESA ALNCSG+VLGS PIRVSPSKTPVRPRV
Sbjct: 277 C-GEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVVLGSLPIRVSPSKTPVRPRV 335
Query: 298 TR 299
R
Sbjct: 336 PR 337
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 253 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 312
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFL 202
G +LG P+RV PSKT + P P L
Sbjct: 313 SGVVLGSLPIRVSPSKTPVRPRVPRHL 339
>gi|212274583|ref|NP_001130716.1| hypothetical protein [Zea mays]
gi|194689926|gb|ACF79047.1| unknown [Zea mays]
gi|413954111|gb|AFW86760.1| hypothetical protein ZEAMMB73_977651 [Zea mays]
Length = 365
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/219 (73%), Positives = 190/219 (86%), Gaps = 5/219 (2%)
Query: 84 NFNNNRRRRNNFNQGRKRLSG-RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ 142
N NRRRRN F QGR+R+ G R RA REDSVRRTVYVSD+DQ++TE++LA +FS+CGQ
Sbjct: 146 NGQPNRRRRNGFIQGRRRMMGARPRRADREDSVRRTVYVSDVDQHVTEQKLAEVFSTCGQ 205
Query: 143 VVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
VVDCR+CGDP+SVLRFAF+EFAD+ A+AAL LGGT+LG+YPV+VLPSKTAILPVNP FL
Sbjct: 206 VVDCRICGDPNSVLRFAFIEFADDVAAQAALALGGTVLGFYPVKVLPSKTAILPVNPKFL 265
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
P ++DE+EM SRTVYCTNIDKK+ + EVKQFFE C GEV+RLRLLGD+VHST IAFVEF
Sbjct: 266 PHTDDEKEMVSRTVYCTNIDKKIAEDEVKQFFEGTC-GEVSRLRLLGDYVHSTCIAFVEF 324
Query: 263 AVAESAILALNCSGMVLGSQPIRVSPSKTPVR---PRVT 298
A+SAILALNCSG+VLG+ P+RVSPSKTPVR PRVT
Sbjct: 325 VQADSAILALNCSGIVLGTLPVRVSPSKTPVRSRSPRVT 363
>gi|222635710|gb|EEE65842.1| hypothetical protein OsJ_21610 [Oryza sativa Japonica Group]
Length = 367
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/298 (57%), Positives = 205/298 (68%), Gaps = 38/298 (12%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP------------------------- 55
K+ E ++ +S+ +KL ++F KLNP A+EF P
Sbjct: 48 KDGGEEVREYKSD--ARKLEELFKKLNPSAEEFVPLARRRGGGDGARRLSADAPVFVSPA 105
Query: 56 -SYYHQHTDHHFSVIN---------NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR 105
+Y QH I D+ N NRRRR++FNQGR+R+ GR
Sbjct: 106 IDFYSQHPVQQPPPIQVLPVVVGGGGGAGLDSSSDGSTNGQPNRRRRSSFNQGRRRMGGR 165
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
R REDSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SVLRFAF+EFAD
Sbjct: 166 PRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFAD 225
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GARAAL LGGT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK V
Sbjct: 226 DVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNV 285
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQP 283
P+ VK FFE C GEV RLRLLGD+VHST IAFVEF A+SAILAL+CSGMVLG+ P
Sbjct: 286 PEDAVKSFFEGMC-GEVARLRLLGDYVHSTCIAFVEFVQADSAILALSCSGMVLGALP 342
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
D + RTVY ++ID+ V + ++ + F G+V R+ GD R AF+EFA
Sbjct: 170 DREDSVRRTVYVSDIDQHVTEQKLAEVFSNC--GQVVDCRICGDPNSVLRFAFIEFADDV 227
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRP 295
A AL G VLG P+RV PSKT + P
Sbjct: 228 GARAALTLGGTVLGYYPVRVLPSKTAILP 256
>gi|147804944|emb|CAN62612.1| hypothetical protein VITISV_033249 [Vitis vinifera]
Length = 369
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 191/248 (77%), Gaps = 10/248 (4%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFN- 86
+ +S +++L ++F+KLNP+A+EF P + +N F + ++ + N
Sbjct: 127 RNGDSGVDMRELQELFSKLNPMAEEFVPPSLANNG------LNGGFYSNGSETHNNTRNG 180
Query: 87 --NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV 144
N RR++NNF QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQVV
Sbjct: 181 QVNGRRKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFITCGQVV 240
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCRVCGDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPR
Sbjct: 241 DCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPR 300
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
+EDEREMC+RT+YCTNIDKKV QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEF +
Sbjct: 301 NEDEREMCARTIYCTNIDKKVSQADVKLFFESVC-GEVYRLRLLGDYHHSTRIAFVEFIM 359
Query: 265 AESAILAL 272
++ ++
Sbjct: 360 ISISMFSI 367
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E+ RTVY ++ID++V + ++ F CG +V R+ GD R AFVEF E A
Sbjct: 209 EIIRRTVYVSDIDQQVTEEKLAALF-ITCG-QVVDCRVCGDPNSVLRFAFVEFTDEEGAR 266
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRP 295
AL+ +G +LG P+RV PSKT + P
Sbjct: 267 AALSLAGTMLGYYPVRVLPSKTAIAP 292
>gi|224061485|ref|XP_002300503.1| predicted protein [Populus trichocarpa]
gi|222847761|gb|EEE85308.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+S R AQRED+VRRTVYVSDIDQ +TEE+LA LF +CGQVVDCR+CGDP+SVL FAF+
Sbjct: 1 ISSRTSMAQREDTVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPNSVLHFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF DE GARAAL+L GTMLGYYPV+VLPSKTAI PVN TFLPR++DEREMC+RT+YCTNI
Sbjct: 61 EFTDEEGARAALSLSGTMLGYYPVKVLPSKTAIAPVNHTFLPRNDDEREMCARTIYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS 281
D+ Q+++K FFE+ C GEV RLRLLGDH H TRIAFVEF +AESAI ALNCSG V+GS
Sbjct: 121 DRNFTQSDIKLFFESLC-GEVYRLRLLGDHHHPTRIAFVEFVMAESAIAALNCSGAVIGS 179
Query: 282 QPIRVSPSKTPVRPRVTR 299
PIRVSPSKTPVRPR R
Sbjct: 180 LPIRVSPSKTPVRPRGPR 197
>gi|195626410|gb|ACG35035.1| CID11 [Zea mays]
Length = 378
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 184/213 (86%), Gaps = 2/213 (0%)
Query: 88 NRRRRNNFNQGRKRLSGRAFRAQR-EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRRN+FN GR+R +G R EDSVRRTVYVSDIDQ++TE++LA +FS+CG+VVDC
Sbjct: 163 NRRRRNSFNHGRRRGAGGRPRRGDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGRVVDC 222
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EF+D+ GARAAL L GT+LG YPVRVLPSKTAILPVNP FLP+++
Sbjct: 223 RICGDPHSVLRFAFIEFSDDAGARAALTLAGTILGCYPVRVLPSKTAILPVNPKFLPQTD 282
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DE+EM SRTVYCTNIDKKV + +VK FF+ AC G+V+RLRLL D VHST IAFVEFA AE
Sbjct: 283 DEKEMVSRTVYCTNIDKKVTEEDVKGFFQQAC-GKVSRLRLLTDIVHSTCIAFVEFAQAE 341
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
SAI+ALN SGMVLGS PIRVSPSKTPVRPR R
Sbjct: 342 SAIMALNFSGMVLGSLPIRVSPSKTPVRPRSPR 374
>gi|224115532|ref|XP_002317057.1| predicted protein [Populus trichocarpa]
gi|222860122|gb|EEE97669.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 147/191 (76%), Positives = 167/191 (87%), Gaps = 1/191 (0%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQ+E+ VRRTVYVSDIDQ +TEE+LA LF +CGQVVDCR+CGDP SVLRFAF+EF DE G
Sbjct: 2 AQQEEIVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDEEG 61
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+AAL+L GTMLGYYPV+VLPSKTAI PVNPTFLPR++DEREMC+RT+YCTNID+ + QA
Sbjct: 62 AQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLTQA 121
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+K FFE+ C GEV LRLLGDH H TRIAFVEF +AESAI ALNCSG+VLGS PIRVSP
Sbjct: 122 NIKLFFESLC-GEVYHLRLLGDHHHPTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 180
Query: 289 SKTPVRPRVTR 299
SKTPVRPR R
Sbjct: 181 SKTPVRPRGPR 191
>gi|212274823|ref|NP_001130545.1| uncharacterized protein LOC100191644 [Zea mays]
gi|194689440|gb|ACF78804.1| unknown [Zea mays]
gi|224030729|gb|ACN34440.1| unknown [Zea mays]
gi|413926010|gb|AFW65942.1| CID11 [Zea mays]
Length = 379
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 184/213 (86%), Gaps = 2/213 (0%)
Query: 88 NRRRRNNFNQGRKRLSGRAFRAQR-EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRRN+FN GR+R +G R EDSVRRTVYVSDIDQ++TE++LA +FS+CG+VVDC
Sbjct: 164 NRRRRNSFNHGRRRGAGGRPRRGDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGRVVDC 223
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EF+D+ GARAAL L GT+LG YPVRVLPSKTAILPVNP FLP+++
Sbjct: 224 RICGDPHSVLRFAFIEFSDDGGARAALTLAGTILGCYPVRVLPSKTAILPVNPKFLPQTD 283
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAE 266
DE+EM SRTVYCTNIDKKV + +VK FF+ AC G+V+RLRLL D VHST IAFVEFA AE
Sbjct: 284 DEKEMVSRTVYCTNIDKKVTEEDVKGFFQQAC-GKVSRLRLLTDIVHSTCIAFVEFAQAE 342
Query: 267 SAILALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
SAI+ALN SGMVLGS PIRVSPSKTPVRPR R
Sbjct: 343 SAIMALNFSGMVLGSLPIRVSPSKTPVRPRSPR 375
>gi|388522717|gb|AFK49420.1| unknown [Medicago truncatula]
Length = 188
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 145/182 (79%), Positives = 164/182 (90%), Gaps = 1/182 (0%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVCGDP+S+LRFAF+EF DE ARAA++
Sbjct: 2 IRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVS 61
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L GTMLGYYP+RVLPSKTAI PVNPT LPRSEDEREMCSRT+YCTNIDKK+ QA+VK FF
Sbjct: 62 LSGTMLGYYPLRVLPSKTAIAPVNPTSLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFF 121
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
E+ C GEV RLRLLGD+ HSTRIAFVEFAVAESAI AL+CSG++LG+ PIRVSPSKTPVR
Sbjct: 122 ESIC-GEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVR 180
Query: 295 PR 296
R
Sbjct: 181 AR 182
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
M RTVY ++ID+ V + ++ F G+V R+ GD R AF+EF ESA
Sbjct: 1 MIRRTVYVSDIDQLVTEEQLASLFLNC--GQVVDCRVCGDPNSILRFAFIEFTDEESARA 58
Query: 271 ALNCSGMVLGSQPIRVSPSKTPVRP 295
A++ SG +LG P+RV PSKT + P
Sbjct: 59 AVSLSGTMLGYYPLRVLPSKTAIAP 83
>gi|15238531|ref|NP_197832.1| CTC-interacting domain 13 protein [Arabidopsis thaliana]
gi|9758532|dbj|BAB08927.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|332005928|gb|AED93311.1| CTC-interacting domain 13 protein [Arabidopsis thaliana]
Length = 320
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/318 (52%), Positives = 205/318 (64%), Gaps = 32/318 (10%)
Query: 3 AVADMPG---DAAAANNTNNNKNNNLETK---------KSESEFTVQKLVDM-------- 42
AVA+ G D++ N +NN + +ETK KS+S +L+
Sbjct: 2 AVAENVGVKVDSSNNQNIDNNTTSLVETKPSCSDDQTPKSKSSVLTNELIQRTSEVNLKS 61
Query: 43 -FTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDN---KQSA--IDNFNNNRRRRNNFN 96
+ LNP+AKEF PS+ Q HH N F N KQ+ I F RR NF
Sbjct: 62 EISHLNPMAKEFVPSFLAQ--THHSEFWGNRFWFTNHFPKQTIFLIGQFATMRR---NFG 116
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+GR ++ + Q ED ++RTVYVSDID +TEE+LA LF SCGQVVDCR+CGD S+L
Sbjct: 117 KGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSIL 176
Query: 157 RFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV 216
RFAF+EF D GAR+AL GTM G +P+RV SKTAI PVNP+FLP+S+DE E C +TV
Sbjct: 177 RFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTV 236
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSG 276
YCTNIDK+V + E++ FF+ C GEV LRLLGD H TRIAFVEF +AESAI ALNCSG
Sbjct: 237 YCTNIDKEVTKMELENFFKTVC-GEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNCSG 295
Query: 277 MVLGSQPIRVSPSKTPVR 294
+VLG PIRVSPSKTPVR
Sbjct: 296 VVLGELPIRVSPSKTPVR 313
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
+M RTVY ++ID +V + ++ F +CG +V R+ GD+ R AF+EF AE A
Sbjct: 133 DMIKRTVYVSDIDNQVTEEQLASLF-LSCG-QVVDCRMCGDYKSILRFAFIEFTDAEGAR 190
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRP 295
AL SG + GS PIRV SKT + P
Sbjct: 191 SALRKSGTMFGSHPIRVFMSKTAIAP 216
>gi|297812631|ref|XP_002874199.1| ctc-interacting domain 13 [Arabidopsis lyrata subsp. lyrata]
gi|297320036|gb|EFH50458.1| ctc-interacting domain 13 [Arabidopsis lyrata subsp. lyrata]
Length = 313
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 204/314 (64%), Gaps = 29/314 (9%)
Query: 3 AVADMPG---DAAAANNTNNNKNNNLETK---------KSESEFTVQKL------VDM-- 42
AVA+ G D++ N +NN + ETK KS S +L VD+
Sbjct: 2 AVAENVGVKVDSSDDQNLDNNTTSLAETKPSCPDDQTPKSNSSVLTNELIQRTSEVDLMS 61
Query: 43 -FTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKR 101
++LNP+AKEF PS+ Q T F F ++ AI R +F QGR+
Sbjct: 62 EISRLNPMAKEFVPSFLAQ-THSEFLRSRLWFTNNFPVQAISTM------RRSFGQGRRW 114
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ + Q ED ++RTVYVSDIDQ +TEE+LA LF SCGQVVDCR+CGD S+LRFAF+
Sbjct: 115 INKKTNLVQNEDVIKRTVYVSDIDQQVTEEQLASLFLSCGQVVDCRICGDHKSILRFAFI 174
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF D GAR+AL GT+ G +P+RV SKTAI PVNP+FLPRSE+E E C +TVYCTNI
Sbjct: 175 EFTDAEGARSALRKSGTVFGSHPIRVHISKTAIAPVNPSFLPRSEEELEKCGKTVYCTNI 234
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS 281
DK+V + E++ FF+ C GEV LRLLGD H TRIAFVEF +AESAI ALN SG+VLG
Sbjct: 235 DKQVTKMELENFFKTVC-GEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNYSGVVLGE 293
Query: 282 QPIRVSPSKTPVRP 295
PIR+SPSKTPVRP
Sbjct: 294 LPIRISPSKTPVRP 307
>gi|53793069|dbj|BAD54280.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|53793076|dbj|BAD54286.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 206
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 141/182 (77%), Positives = 160/182 (87%), Gaps = 1/182 (0%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+ GR R REDSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SVLRFAF+
Sbjct: 1 MGGRPRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EFAD+ GARAAL LGGT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNI
Sbjct: 61 EFADDVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS 281
DK VP+ VK FFE C GEV RLRLLGD+VHST IAFVEF A+SAILAL+CSGMVLG+
Sbjct: 121 DKNVPEDAVKSFFEGMC-GEVARLRLLGDYVHSTCIAFVEFVQADSAILALSCSGMVLGA 179
Query: 282 QP 283
P
Sbjct: 180 LP 181
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
PR D + RTVY ++ID+ V + ++ + F G+V R+ GD R AF+EF
Sbjct: 5 PRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNC--GQVVDCRICGDPNSVLRFAFIEF 62
Query: 263 AVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
A A AL G VLG P+RV PSKT + P
Sbjct: 63 ADDVGARAALTLGGTVLGYYPVRVLPSKTAILP 95
>gi|413941689|gb|AFW74338.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 182
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 139/176 (78%), Positives = 155/176 (88%), Gaps = 1/176 (0%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVRV
Sbjct: 8 VTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVRV 67
Query: 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL 247
LPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ C GEV RLRL
Sbjct: 68 LPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESIC-GEVFRLRL 126
Query: 248 LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
LGD+ HSTRIAFVEF +AESA ALNCSG++LGS PIRVSPSKTPVRPR R MH
Sbjct: 127 LGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 182
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 94 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 153
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 154 SGVILGSLPIRVSPSKTPVRPRAP 177
>gi|413921444|gb|AFW61376.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 482
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNFA 74
E ++ L D+ +KLNP+A+EF P + F +N FA
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 75 DDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVRR 117
+ A+ + + R + + G + R AQR++++RR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL G
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSG 216
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
T+LGYYPV+VLPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 217 TVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESI 276
Query: 238 CGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
C GEV RLRLLGD+ HSTRIAFVEF +AESA ALNCSG+VLGS PI +
Sbjct: 277 C-GEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVVLGSLPISL 324
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E RTVY ++ID +V + + F G+V R+ GD R AF+EF E A
Sbjct: 152 EAIRRTVYVSDIDHQVTEENLAALFINC--GQVVDCRMCGDPNSVLRFAFIEFTDEEGAR 209
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRP 295
ALN SG VLG P++V PSKT + P
Sbjct: 210 AALNLSGTVLGYYPVKVLPSKTAIAP 235
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 253 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 312
Query: 176 GGTMLGYYPVRVL 188
G +LG P+ ++
Sbjct: 313 SGVVLGSLPISLM 325
>gi|414868267|tpg|DAA46824.1| TPA: hypothetical protein ZEAMMB73_802900 [Zea mays]
Length = 328
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 149/175 (85%), Gaps = 1/175 (0%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF D+ GARAALNL G MLGYYPV V
Sbjct: 153 VTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDDEGARAALNLSGNMLGYYPVNV 212
Query: 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL 247
LPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDK V QA++K FFE+ C GEV RLRL
Sbjct: 213 LPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKMVAQADLKLFFESIC-GEVFRLRL 271
Query: 248 LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGM 302
LGD+ HSTRIAFVEF +AESA ALN SG+VLGS PIRV+PSKTPVRPR R M
Sbjct: 272 LGDYHHSTRIAFVEFVMAESATAALNSSGVVLGSLPIRVNPSKTPVRPRDPRQLM 326
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ + + L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 239 RTIYCTNIDKMVAQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNS 298
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 299 SGVVLGSLPIRVNPSKTPVRPRDP 322
>gi|326508995|dbj|BAJ86890.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 169
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 147/170 (86%), Gaps = 1/170 (0%)
Query: 134 AGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193
A +FS+CGQVVDCR+CGDP+SV+RFAF+EFAD+ GARAAL LGGT+LG+YPVRVLPSKTA
Sbjct: 1 AEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDVGARAALALGGTVLGFYPVRVLPSKTA 60
Query: 194 ILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH 253
ILPVNP FLPR+EDE+EM SRTVYCTNIDK VP+ VK FFE C GEV RLRLLGD+VH
Sbjct: 61 ILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKNFFEGIC-GEVARLRLLGDYVH 119
Query: 254 STRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
+T IAFVEF AE AILALNCSGM+LGS P+RVSPSKTPVRPR R H
Sbjct: 120 ATCIAFVEFVEAEGAILALNCSGMLLGSLPVRVSPSKTPVRPRSPRVVSH 169
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF + GA
Sbjct: 76 KEMVSRTVYCTNIDKNVPEDVVKNFFEGICGEVARLRLLGDYVHATCIAFVEFVEAEGAI 135
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNP 199
ALN G +LG PVRV PSKT + P +P
Sbjct: 136 LALNCSGMLLGSLPVRVSPSKTPVRPRSP 164
>gi|224106628|ref|XP_002333653.1| predicted protein [Populus trichocarpa]
gi|222837945|gb|EEE76310.1| predicted protein [Populus trichocarpa]
Length = 158
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 117/157 (74%), Positives = 136/157 (86%), Gaps = 1/157 (0%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQ+E+ VRRTVYVSDIDQ +TEE+LA LF +CGQVVDCR+CGDP SVLRFAF+EF DE G
Sbjct: 2 AQQEEIVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDEEG 61
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+AAL+L GTMLGYYPV+VLPSKTAI PVNPTFLPR++DEREMC+RT+YCTNID+ + QA
Sbjct: 62 AQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLTQA 121
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
+K FFE+ C GEV LRLLGDH H TRIAFVEF +
Sbjct: 122 NIKLFFESLC-GEVYHLRLLGDHHHPTRIAFVEFVMV 157
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 208 EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAES 267
+ E+ RTVY ++ID++V + ++ F G+V R+ GD R AF+EF E
Sbjct: 4 QEEIVRRTVYVSDIDQQVTEEQLAALFINC--GQVVDCRICGDPKSVLRFAFIEFTDEEG 61
Query: 268 AILALNCSGMVLGSQPIRVSPSKTPVRP 295
A AL+ SG +LG P++V PSKT + P
Sbjct: 62 AQAALSLSGTMLGYYPVKVLPSKTAIAP 89
>gi|302830029|ref|XP_002946581.1| hypothetical protein VOLCADRAFT_56092 [Volvox carteri f.
nagariensis]
gi|300268327|gb|EFJ52508.1| hypothetical protein VOLCADRAFT_56092 [Volvox carteri f.
nagariensis]
Length = 238
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 118/188 (62%), Positives = 147/188 (78%), Gaps = 1/188 (0%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E++++RTVY+S +D +TEE LA FS CG++VDCR+CGDP+S +RFAF+EFAD A
Sbjct: 12 EENIKRTVYISYVDCTLTEENLAAFFSDCGRIVDCRICGDPNSAMRFAFIEFADVEFATK 71
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G++LG P+RVLPSKTAI+PVN +PRS DE E CSRTVY NIDKKV + +V+
Sbjct: 72 ALEKTGSVLGKSPLRVLPSKTAIMPVNQELMPRSPDEVERCSRTVYAANIDKKVDKNDVR 131
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
FFE+ C G+V+R+RLLGD+ HSTRIAFVEF AE A+ ALNCSG +LGS PIRVSPSKT
Sbjct: 132 AFFESLC-GKVSRIRLLGDYAHSTRIAFVEFQHAEGALAALNCSGALLGSLPIRVSPSKT 190
Query: 292 PVRPRVTR 299
PV+ V R
Sbjct: 191 PVKVEVGR 198
>gi|159464635|ref|XP_001690547.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158280047|gb|EDP05806.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 464
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/183 (63%), Positives = 145/183 (79%), Gaps = 1/183 (0%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+++RRTVY+S +D ++TEE LA FS CG+++DCR+CGDP+S +RFAF+EF D A
Sbjct: 190 EENIRRTVYISYVDCSLTEENLAAFFSDCGRILDCRICGDPNSAMRFAFIEFMDVECAAK 249
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G++LG P+RVLPSKTAI+PVN +PRS DE E CSRTVY NIDKKV + +VK
Sbjct: 250 ALEKTGSVLGNSPLRVLPSKTAIMPVNQELMPRSADEVERCSRTVYAANIDKKVDKNDVK 309
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
FFE+ C G+V+R+RLLGD+ HSTRIAFVEF AE A+ ALNCSG +LGS PIRVSPSKT
Sbjct: 310 AFFESLC-GKVSRIRLLGDYAHSTRIAFVEFHHAEGALAALNCSGALLGSLPIRVSPSKT 368
Query: 292 PVR 294
PVR
Sbjct: 369 PVR 371
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
RTVY + +D + + + FF + CG + R+ GD + R AF+EF E A AL
Sbjct: 195 RTVYISYVDCSLTEENLAAFF-SDCG-RILDCRICGDPNSAMRFAFIEFMDVECAAKALE 252
Query: 274 CSGMVLGSQPIRVSPSKTPVRP 295
+G VLG+ P+RV PSKT + P
Sbjct: 253 KTGSVLGNSPLRVLPSKTAIMP 274
>gi|222641306|gb|EEE69438.1| hypothetical protein OsJ_28831 [Oryza sativa Japonica Group]
Length = 353
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 128/210 (60%), Positives = 153/210 (72%), Gaps = 4/210 (1%)
Query: 88 NRRRRNNFN-QGRKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVV 144
+RR NF+ QGR S R RAQ+E+ VRRT++VSDID +TE+ LA LF S C VV
Sbjct: 129 SRRGSRNFSRQGRSAPFSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVV 188
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCR+CGD S LRFAF+EF DE A AAL+L G +LG P+RV PSKTAI+PVNP+FLP+
Sbjct: 189 DCRICGDHSSGLRFAFIEFQDESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQ 248
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
SE EREMCSRT+YCTNIDK V ++K F E G+V RL+LLGD H TRIAF+EFA
Sbjct: 249 SEAEREMCSRTIYCTNIDKSVNVTDLKYFCEEHF-GQVFRLKLLGDDGHPTRIAFIEFAE 307
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVR 294
+ AI ALN SG+ QPIRV PSKTP+R
Sbjct: 308 VDGAINALNSSGIFASGQPIRVCPSKTPIR 337
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA 263
R + E RT++ ++ID V + + + F + C V R+ GDH R AF+EF
Sbjct: 150 RRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCS-VVVDCRICGDHSSGLRFAFIEFQ 208
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
A AL+ G VLG P+RVSPSKT + P
Sbjct: 209 DESDAYAALDLDGYVLGICPLRVSPSKTAIMP 240
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEH 167
A+RE RT+Y ++ID+++ L GQV ++ GD R AF+EFA+
Sbjct: 251 AERE-MCSRTIYCTNIDKSVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVD 309
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPV 197
GA ALN G P+RV PSKT I V
Sbjct: 310 GAINALNSSGIFASGQPIRVCPSKTPIRSV 339
>gi|218201903|gb|EEC84330.1| hypothetical protein OsI_30837 [Oryza sativa Indica Group]
Length = 353
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 128/210 (60%), Positives = 153/210 (72%), Gaps = 4/210 (1%)
Query: 88 NRRRRNNFN-QGRKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVV 144
+RR NF+ QGR S R RAQ+E+ VRRT++VSDID +TE+ LA LF S C VV
Sbjct: 129 SRRGSRNFSRQGRSAPFSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVV 188
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCR+CGD S LRFAF+EF DE A AAL+L G +LG P+RV PSKTAI+PVNP+FLP+
Sbjct: 189 DCRICGDHSSGLRFAFIEFQDESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQ 248
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
SE EREMCSRT+YCTNIDK V ++K F E G+V RL+LLGD H TRIAF+EFA
Sbjct: 249 SEAEREMCSRTIYCTNIDKSVNVTDLKYFCEEHF-GQVFRLKLLGDDGHPTRIAFIEFAE 307
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVR 294
+ AI ALN SG+ QPIRV PSKTP+R
Sbjct: 308 VDGAINALNSSGIFASGQPIRVCPSKTPIR 337
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA 263
R + E RT++ ++ID V + + + F + C V R+ GDH R AF+EF
Sbjct: 150 RRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCS-VVVDCRICGDHSSGLRFAFIEFQ 208
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
A AL+ G VLG P+RVSPSKT + P
Sbjct: 209 DESDAYAALDLDGYVLGICPLRVSPSKTAIMP 240
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEH 167
A+RE RT+Y ++ID+++ L GQV ++ GD R AF+EFA+
Sbjct: 251 AERE-MCSRTIYCTNIDKSVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVD 309
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPV 197
GA ALN G P+RV PSKT I V
Sbjct: 310 GAINALNSSGIFASGQPIRVCPSKTPIRSV 339
>gi|413916285|gb|AFW56217.1| hypothetical protein ZEAMMB73_723080 [Zea mays]
Length = 246
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 121/138 (87%), Gaps = 1/138 (0%)
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDC +CGDP+SVLRF F+EF DE GARAALNL GTMLGYYPVR
Sbjct: 22 KVTEENLAALFINCGQVVDCHMCGDPNSVLRFTFIEFTDEEGARAALNLSGTMLGYYPVR 81
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ C GEV RLR
Sbjct: 82 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESIC-GEVFRLR 140
Query: 247 LLGDHVHSTRIAFVEFAV 264
LLGD+ HSTRIAFVEF +
Sbjct: 141 LLGDYHHSTRIAFVEFVM 158
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G+V + GD R F+EF E A ALN SG +LG P+RV PSKT + P
Sbjct: 36 GQVVDCHMCGDPNSVLRFTFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAP 91
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFA 164
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF
Sbjct: 109 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV 157
>gi|413921445|gb|AFW61377.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 315
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/250 (49%), Positives = 156/250 (62%), Gaps = 36/250 (14%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNFA 74
E ++ L D+ +KLNP+A+EF P + F +N FA
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 75 DDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVRR 117
+ A+ + + R + + G + R AQR++++RR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL G
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSG 216
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
T+LGYYPV+VLPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 217 TVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESI 276
Query: 238 CGGEVTRLRL 247
C GEV R L
Sbjct: 277 C-GEVGRSLL 285
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E RTVY ++ID +V + + F CG +V R+ GD R AF+EF E A
Sbjct: 152 EAIRRTVYVSDIDHQVTEENLAALF-INCG-QVVDCRMCGDPNSVLRFAFIEFTDEEGAR 209
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRP 295
ALN SG VLG P++V PSKT + P
Sbjct: 210 AALNLSGTVLGYYPVKVLPSKTAIAP 235
>gi|307105908|gb|EFN54155.1| hypothetical protein CHLNCDRAFT_13101, partial [Chlorella
variabilis]
Length = 187
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 137/183 (74%), Gaps = 1/183 (0%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+ VR TVY+SDI +TE +LA F CGQ+VDCRVCGDP+S +RFAF+EF E A+
Sbjct: 6 EEKVRCTVYISDISDTVTEAQLAAFFQDCGQLVDCRVCGDPNSSMRFAFIEFMQEDSAQQ 65
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G MLG +P+RV PSKTAI+PVN T+LPRS +ERE+ +RTV+ NID+ V + ++
Sbjct: 66 ALGKSGAMLGDFPIRVSPSKTAIVPVNNTYLPRSTEERELVARTVFVGNIDRVVEREQLS 125
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
+FF+ C G V+++RLLGD HS +IAF+EF AESA AL SG +LG+ P+RVSPSKT
Sbjct: 126 EFFQNLC-GPVSKIRLLGDSQHSAKIAFIEFVTAESARAALKLSGALLGTLPLRVSPSKT 184
Query: 292 PVR 294
PVR
Sbjct: 185 PVR 187
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA 263
R +E+ C TVY ++I V +A++ FF+ G++ R+ GD S R AF+EF
Sbjct: 3 RRNEEKVRC--TVYISDISDTVTEAQLAAFFQDC--GQLVDCRVCGDPNSSMRFAFIEFM 58
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
+SA AL SG +LG PIRVSPSKT + P
Sbjct: 59 QEDSAQQALGKSGAMLGDFPIRVSPSKTAIVP 90
>gi|116789825|gb|ABK25401.1| unknown [Picea sitchensis]
Length = 124
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 105/125 (84%), Positives = 114/125 (91%), Gaps = 1/125 (0%)
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RT+YCTNIDKKV Q EV+ FFE+ C
Sbjct: 1 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLC 60
Query: 239 GGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVT 298
GEV+RLRLLGDHVHSTRIAFVEF +AESAILALNCSG ++GS PIRVSPSKTPVRPR+
Sbjct: 61 -GEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIP 119
Query: 299 RPGMH 303
P MH
Sbjct: 120 HPTMH 124
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD R AFVEF A ALN
Sbjct: 36 RTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNC 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G ++G P+RV PSKT + P P
Sbjct: 96 SGAIVGSLPIRVSPSKTPVRPRIP 119
>gi|413941690|gb|AFW74339.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 286
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 141/220 (64%), Gaps = 26/220 (11%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------------SYYHQHTDHHFSVINNN--- 72
E ++ L D+ +KLNP+A+EF P +Y F+V +
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAGFAVASPGHGG 92
Query: 73 ------FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
AD + + + R+R + R AQR++ +RRTVYVSDID
Sbjct: 93 VVGFPAVADAHAARGRKKGGAGGGFSGHGHPARRRTNSRTSMAQRDEIIRRTVYVSDIDH 152
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVR
Sbjct: 153 QVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVR 212
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKVP
Sbjct: 213 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVP 252
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E+ RTVY ++ID +V + + F G+V R+ GD R AF+EF E A
Sbjct: 139 EIIRRTVYVSDIDHQVTEENLAALFINC--GQVVDCRMCGDPNSVLRFAFIEFTDEEGAR 196
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRP 295
ALN SG VLG P+RV PSKT + P
Sbjct: 197 AALNLSGTVLGYYPVRVLPSKTAIAP 222
>gi|384248219|gb|EIE21704.1| hypothetical protein COCSUDRAFT_56895 [Coccomyxa subellipsoidea
C-169]
Length = 231
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/186 (56%), Positives = 137/186 (73%), Gaps = 2/186 (1%)
Query: 110 QREDSVRRTVYVS-DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
QR+ RR + N+TE LA +F G++VDCRVCGDP+S +RFAF+EFADE
Sbjct: 44 QRQSRPRRKAALQKQFGGNVTEAALADVFKHSGKIVDCRVCGDPNSAMRFAFIEFADEEA 103
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+ A+ L GTMLG +P+RV+PSKTAI+PVN +FLPR+++E E C+RTVY NIDKKV +
Sbjct: 104 IQRAIKLNGTMLGKFPIRVMPSKTAIVPVNNSFLPRTQEELERCARTVYIANIDKKVDRE 163
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
EV+ FF+ C G VT++RLL D+ H + IAFVEFA +SA AL+CSG +LGS PIRV+P
Sbjct: 164 EVRVFFQTLC-GPVTKIRLLSDYNHVSSIAFVEFADFKSARKALDCSGALLGSLPIRVTP 222
Query: 289 SKTPVR 294
SK PVR
Sbjct: 223 SKAPVR 228
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G++ R+ GD + R AF+EFA E+ A+ +G +LG PIRV PSKT + P
Sbjct: 76 GKIVDCRVCGDPNSAMRFAFIEFADEEAIQRAIKLNGTMLGKFPIRVMPSKTAIVP 131
>gi|384245723|gb|EIE19216.1| hypothetical protein COCSUDRAFT_38408 [Coccomyxa subellipsoidea
C-169]
Length = 200
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
+ S Q +TE LA +F G++VDCRVCGDP+S +RFAF+EFADE + A+ L G
Sbjct: 24 WQSPFHQKVTEASLADVFKDSGKIVDCRVCGDPNSAMRFAFIEFADERAVQQAIKLNGAK 83
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LG YP+RV+PSKTAI+PVN +FLPR++ E E C+RTVY NIDK+V + +V+QFFE C
Sbjct: 84 LGKYPIRVMPSKTAIVPVNTSFLPRTQKELECCARTVYVANIDKRVDREDVRQFFETLC- 142
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
G V ++RLL D+ + IAFVEFA +SA AL+CSG +LG PIRV+PSK PVR
Sbjct: 143 GPVKKIRLLSDYNKVSSIAFVEFAGFDSARKALDCSGALLGMLPIRVTPSKAPVR 197
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 108 RAQRE-DSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFAD 165
R Q+E + RTVYV++ID+ + E + F + CG V R+ D + V AFVEFA
Sbjct: 108 RTQKELECCARTVYVANIDKRVDREDVRQFFETLCGPVKKIRLLSDYNKVSSIAFVEFAG 167
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAI 194
AR AL+ G +LG P+RV PSK +
Sbjct: 168 FDSARKALDCSGALLGMLPIRVTPSKAPV 196
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQ 282
+KV +A + F+ + G++ R+ GD + R AF+EFA + A+ +G LG
Sbjct: 30 QKVTEASLADVFKDS--GKIVDCRVCGDPNSAMRFAFIEFADERAVQQAIKLNGAKLGKY 87
Query: 283 PIRVSPSKTPVRP 295
PIRV PSKT + P
Sbjct: 88 PIRVMPSKTAIVP 100
>gi|388517685|gb|AFK46904.1| unknown [Lotus japonicus]
Length = 124
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 110/125 (88%), Gaps = 1/125 (0%)
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
MLGYYP+RVLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ Q++VK FFE+ C
Sbjct: 1 MLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESIC 60
Query: 239 GGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVT 298
GEV RLRLLGDH HSTRIAFVEF VAESAI AL+CSG++LGS PIRVSPSKTPVR R
Sbjct: 61 -GEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSP 119
Query: 299 RPGMH 303
R MH
Sbjct: 120 RSPMH 124
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD + R AFVEF A AAL+
Sbjct: 36 RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 95
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 96 SGVILGSLPIRVSPSKTPV 114
>gi|413954119|gb|AFW86768.1| hypothetical protein ZEAMMB73_327506 [Zea mays]
Length = 219
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 114/146 (78%), Gaps = 2/146 (1%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYP+ V
Sbjct: 40 VTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPINV 99
Query: 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVTRLR 246
L SKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG +V R
Sbjct: 100 LLSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGELKVCRNG 159
Query: 247 LLGDHVHSTRIA-FVEFAVAESAILA 271
+ + + +I F++F V ++
Sbjct: 160 TIKIDLETNKIMDFIKFDVGNVVMMT 185
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G+V R+ GD R AF+EF E A ALN SG VLG PI V SKT + P
Sbjct: 53 GQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPINVLLSKTAIAP 108
>gi|413952071|gb|AFW84720.1| hypothetical protein ZEAMMB73_482719 [Zea mays]
Length = 625
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 101/118 (85%)
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185
+TEE LA LF + GQVVDC +CGDP+SVL+FAF+EF DE GAR ALNL GT+L YYPV
Sbjct: 308 HQVTEENLAALFINYGQVVDCHMCGDPNSVLQFAFIEFTDEEGARVALNLSGTVLRYYPV 367
Query: 186 RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVT 243
RVLPSKTAI PVNPTF+PRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG ++T
Sbjct: 368 RVLPSKTAIAPVNPTFVPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGEKMT 425
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G+V + GD + AF+EF E A +ALN SG VL P+RV PSKT + P
Sbjct: 323 GQVVDCHMCGDPNSVLQFAFIEFTDEEGARVALNLSGTVLRYYPVRVLPSKTAIAP 378
>gi|414884994|tpg|DAA61008.1| TPA: hypothetical protein ZEAMMB73_630517 [Zea mays]
Length = 295
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 126/192 (65%), Gaps = 3/192 (1%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVE 162
++ R+Q +++V+RT++V ID N+TE+ LA LF G VVDCR+CGDP S LRF FVE
Sbjct: 96 KSHRSQWDETVKRTIFVKYIDHNVTEDILACLFQLFGTVVDCRICGDPTSDDGLRFGFVE 155
Query: 163 FADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
E A A+L+L G ++ P+ V S+TAI P+NP FLP+SE E E C RT+YCTNI
Sbjct: 156 LQHEDEAIASLDLDGYIISVSPLSVSRSRTAICPINPKFLPQSEAEWETCLRTIYCTNIS 215
Query: 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQ 282
K V + ++ F EA G+V R+RLL + ST IAF+EF AI AL G+ +
Sbjct: 216 KNVTSSNLRSFCEAY-FGKVCRVRLLDNKERSTNIAFIEFVEVYGAIAALGSGGIYVDGV 274
Query: 283 PIRVSPSKTPVR 294
PIR+ PSK+P+R
Sbjct: 275 PIRMCPSKSPIR 286
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 199 PTFLPRSEDER-EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH--ST 255
PTF + E RT++ ID V + + F+ G V R+ GD
Sbjct: 92 PTFFKSHRSQWDETVKRTIFVKYIDHNVTEDILACLFQLF--GTVVDCRICGDPTSDDGL 149
Query: 256 RIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
R FVE + AI +L+ G ++ P+ VS S+T + P
Sbjct: 150 RFGFVELQHEDEAIASLDLDGYIISVSPLSVSRSRTAICP 189
>gi|50726388|dbj|BAD33999.1| RNA-binding protein-like [Oryza sativa Japonica Group]
Length = 316
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 127/201 (63%), Gaps = 24/201 (11%)
Query: 88 NRRRRNNFN-QGRKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVV 144
+RR NF+ QGR S R RAQ+E+ VRRT++VSDID +TE+ LA LF S C VV
Sbjct: 129 SRRGSRNFSRQGRSAPFSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVV 188
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCR+CGD S LRFAF+EF DE A AAL+L G +LG P+RV PSKTAI+PVNP+FLP
Sbjct: 189 DCRICGDHSSGLRFAFIEFQDESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLP- 247
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
+V ++K F E G+V RL+LLGD H TRIAF+EFA
Sbjct: 248 -------------------QVNVTDLKYFCEEHF-GQVFRLKLLGDDGHPTRIAFIEFAE 287
Query: 265 AESAILALNCSGMVLGSQPIR 285
+ AI ALN SG+ QPIR
Sbjct: 288 VDGAINALNSSGIFASGQPIR 308
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA 263
R + E RT++ ++ID V + + + F + C V R+ GDH R AF+EF
Sbjct: 150 RRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCS-VVVDCRICGDHSSGLRFAFIEFQ 208
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
A AL+ G VLG P+RVSPSKT + P
Sbjct: 209 DESDAYAALDLDGYVLGICPLRVSPSKTAIMP 240
>gi|413943210|gb|AFW75859.1| putative ubiquitin-conjugating enzyme family [Zea mays]
Length = 699
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 101/142 (71%), Gaps = 21/142 (14%)
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGY 182
D+ +TEE LA LF +CGQVVDCR+CGDP+SVLRF F+EF DE GARAALNL GT+L Y
Sbjct: 482 DLFCQVTEENLAALFINCGQVVDCRMCGDPNSVLRFTFIEFTDEEGARAALNLSGTVLRY 541
Query: 183 YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV 242
YPV VLPSKT I PVNPTFLPR V QA++K FFE+ C GEV
Sbjct: 542 YPVSVLPSKTVIAPVNPTFLPR--------------------VTQADLKLFFESIC-GEV 580
Query: 243 TRLRLLGDHVHSTRIAFVEFAV 264
RLRLLGD+ HSTRIAFVEF +
Sbjct: 581 FRLRLLGDYHHSTRIAFVEFVM 602
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G+V R+ GD R F+EF E A ALN SG VL P+ V PSKT + P
Sbjct: 500 GQVVDCRMCGDPNSVLRFTFIEFTDEEGARAALNLSGTVLRYYPVSVLPSKTVIAP 555
>gi|414884567|tpg|DAA60581.1| TPA: hypothetical protein ZEAMMB73_957971 [Zea mays]
Length = 296
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 85/98 (86%)
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
VVDCR+CGDP+SVLRFAF+EFADE GARAA NL T+LGYYPV VLPSKTAI PVN TF
Sbjct: 131 HVVDCRMCGDPNSVLRFAFIEFADEEGARAAPNLSRTVLGYYPVNVLPSKTAIAPVNETF 190
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPRS+DEREMC+ T+YCTNIDKKV QA++ FFE+ CG
Sbjct: 191 LPRSDDEREMCASTIYCTNIDKKVTQADLNLFFESICG 228
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%)
Query: 241 EVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
V R+ GD R AF+EFA E A A N S VLG P+ V PSKT + P
Sbjct: 131 HVVDCRMCGDPNSVLRFAFIEFADEEGARAAPNLSRTVLGYYPVNVLPSKTAIAP 185
>gi|242044320|ref|XP_002460031.1| hypothetical protein SORBIDRAFT_02g021070 [Sorghum bicolor]
gi|241923408|gb|EER96552.1| hypothetical protein SORBIDRAFT_02g021070 [Sorghum bicolor]
Length = 288
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 141/269 (52%), Gaps = 37/269 (13%)
Query: 46 LNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAI-------------DNFNNNRRRR 92
LNP A+EF P + + SV F + A +N R R
Sbjct: 16 LNPDAREFLPWWRLGGSRKQLSVDAPEFIPTSWGKAAAAAAARGVVIARPNNSGTGRAAR 75
Query: 93 NNFNQGRKRLSG------RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
+ R+ + ++ R+Q +++V+RT++V ID +TEE LA +F G VVDC
Sbjct: 76 RPASNSRQDANSPRNAFFKSHRSQWDETVKRTIFVKYIDHTVTEETLACMFRLFGTVVDC 135
Query: 147 RVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
R+CG P S LRF FVE E A A+L+L G+++G V V S+TAI P+NP FLP+S
Sbjct: 136 RICGHPTSGGLRFGFVELRHEDEALASLDLDGSIIGISAVSVSRSRTAICPINPKFLPQS 195
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265
E E E C RT+YCT+I K V RL+LL + ST IAF+EFA
Sbjct: 196 EAEWETCLRTIYCTSISKI-----------------VCRLKLLDNGERSTNIAFIEFAEV 238
Query: 266 ESAILALNCSGMVLGSQPIRVSPSKTPVR 294
+ AI AL G+ + PIR+ PSK+P+R
Sbjct: 239 DGAIAALMSGGIYVDGIPIRMCPSKSPIR 267
>gi|290985874|ref|XP_002675650.1| predicted protein [Naegleria gruberi]
gi|284089247|gb|EFC42906.1| predicted protein [Naegleria gruberi]
Length = 422
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 121/194 (62%), Gaps = 12/194 (6%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
+A+ +D ++RT+YV+ ID I E ++ FS CG++V+ RVCGD RFAF EF +
Sbjct: 79 KAEEDDKIKRTIYVTSIDTQILEAQVCEFFSYCGRIVNYRVCGDTQHPTRFAFFEFEQKE 138
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNP--------TFLPRSEDEREMCSRTVYCT 219
A+AA++L G LG Y +R+L S+T I P +F P D+ +RTVY
Sbjct: 139 SAQAAVSLSGQFLGRYALRILGSRTPIQPTPGAVGNGAVYSFTPAHHDQ---INRTVYVG 195
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVL 279
N D + + ++K+FF+A C G VT++ L GD VHS R AFVEF ES AL CSG +L
Sbjct: 196 NADISLTEDDLKEFFDANC-GPVTKVVLAGDAVHSARFAFVEFLHMESRNKALECSGTLL 254
Query: 280 GSQPIRVSPSKTPV 293
G++ IR++PS+TP+
Sbjct: 255 GNRNIRINPSRTPI 268
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 25/162 (15%)
Query: 157 RFAFVEFADEHGARAALNLGGT-MLGYY--------------PVRVLPSKTAILPVNPT- 200
++AFVEF+ A+ A+ L GT +LG + PV+ P++ + N T
Sbjct: 8 KYAFVEFSSSEEAKVAIELSGTEILGKHLKISLSRSPISNPTPVQSNPTQISPTDDNATK 67
Query: 201 --FLPRSE-----DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH 253
FL SE +E + RT+Y T+ID ++ +A+V +FF + CG + R+ GD H
Sbjct: 68 YQFLSESELKRKAEEDDKIKRTIYVTSIDTQILEAQVCEFF-SYCG-RIVNYRVCGDTQH 125
Query: 254 STRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
TR AF EF ESA A++ SG LG +R+ S+TP++P
Sbjct: 126 PTRFAFFEFEQKESAQAAVSLSGQFLGRYALRILGSRTPIQP 167
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFA 164
+F D + RTVYV + D ++TE+ L F ++CG V + GD RFAFVEF
Sbjct: 179 SFTPAHHDQINRTVYVGNADISLTEDDLKEFFDANCGPVTKVVLAGDAVHSARFAFVEFL 238
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAIL 195
AL GT+LG +R+ PS+T IL
Sbjct: 239 HMESRNKALECSGTLLGNRNIRINPSRTPIL 269
>gi|413922754|gb|AFW62686.1| hypothetical protein ZEAMMB73_396388 [Zea mays]
Length = 279
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 10/122 (8%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLR----------FAFVEFADEHGARAALNLGG 177
+TEE L LF +CGQVVDC +CGDP+ VL + GARAALNL G
Sbjct: 90 VTEENLVALFINCGQVVDCHMCGDPNLVLSLLTLCNGSTIYGVKNIDVPEGARAALNLSG 149
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
T+LGYYPV VLPSKTAI PVN TFLPRS DE EMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 150 TVLGYYPVNVLPSKTAIAPVNETFLPRSNDEHEMCARTIYCTNIDKKVTQADLKLFFESI 209
Query: 238 CG 239
CG
Sbjct: 210 CG 211
>gi|414884993|tpg|DAA61007.1| TPA: hypothetical protein ZEAMMB73_630517 [Zea mays]
Length = 317
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 117/220 (53%), Gaps = 47/220 (21%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ---------------------- 142
++ R+Q +++V+RT++V ID N+TE+ LA LF G
Sbjct: 106 KSHRSQWDETVKRTIFVKYIDHNVTEDILACLFQLFGTSYIVWDRKVNAYISTRWCIFFY 165
Query: 143 ------VVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
VVDCR+CGDP S LRF FVE E A A+L+L G ++ P+ V S+TAI
Sbjct: 166 ITNRYTVVDCRICGDPTSDDGLRFGFVELQHEDEAIASLDLDGYIISVSPLSVSRSRTAI 225
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS 254
P+NP FLP+SE E E C RT+YCTNI K V R+RLL + S
Sbjct: 226 CPINPKFLPQSEAEWETCLRTIYCTNISKN-----------------VCRVRLLDNKERS 268
Query: 255 TRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
T IAF+EF AI AL G+ + PIR+ PSK+P+R
Sbjct: 269 TNIAFIEFVEVYGAIAALGSGGIYVDGVPIRMCPSKSPIR 308
>gi|357153308|ref|XP_003576409.1| PREDICTED: uncharacterized protein LOC100831764 [Brachypodium
distachyon]
Length = 294
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 132/266 (49%), Gaps = 46/266 (17%)
Query: 44 TKLNPLAKEFFPSYYHQHTDHHFSVIN---NNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100
+KLNPLA EF P + Q + S + + ++ + N + R
Sbjct: 25 SKLNPLAAEFVPRWLRQDGRRNSSAVAPPVSAVTPAPVVVGHPVVVSDVGKNNAVPKTRP 84
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R RR +N TE+ LA F CG VVDCR+C +P S FAF
Sbjct: 85 R-------------ARRV-------RNATEKDLADRFRQCGAVVDCRICRNPRSEFLFAF 124
Query: 161 VEFADEHG---------------------ARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
+EF H A AAL+L G +G V+V PS+TAI+ VNP
Sbjct: 125 IEF-QYHANFEFHVKQNIKKQMLHPISDDASAALHLKGVTIGDRHVKVAPSRTAIMHVNP 183
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAF 259
+FL +S+ E+EMCSRTVYCTNI+K V AE+ FF+A G V+R+RLLGD H T IAF
Sbjct: 184 SFLAQSDGEKEMCSRTVYCTNIEKSVTCAELVGFFQAYFGS-VSRVRLLGDDNHVTGIAF 242
Query: 260 VEFAVAESAILALNCSGMVLGSQPIR 285
VEFA + I AL G+ PIR
Sbjct: 243 VEFAEVSADIAALRSIGIYARGLPIR 268
>gi|303278248|ref|XP_003058417.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459577|gb|EEH56872.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 187
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 110/183 (60%), Gaps = 1/183 (0%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E ++ V+VS++ +++E LA +F+ CG+V+DCR CGD +FAFV F H
Sbjct: 6 EPTMWHNVHVSNVSLSVSESALARVFAGCGRVLDCRTCGDCGDKKKFAFVAFETSHEVDQ 65
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL L G ++ +RV SKTA++PVNP LP SE + E C RTVY +NID ++K
Sbjct: 66 ALTLDGFVVDGRAIRVTRSKTAVIPVNPGLLPTSEADVERCGRTVYVSNIDPTTSDDDLK 125
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
+ FEA G + R L R AF+EF A SA+ AL SG V+G++ +RV PSKT
Sbjct: 126 RAFEANAGA-IRRAHALSSSRRDARNAFIEFENASSAVSALGMSGRVIGARKVRVVPSKT 184
Query: 292 PVR 294
P++
Sbjct: 185 PLK 187
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCS 275
V+ +N+ V ++ + + F A CG V R GD + AFV F + AL
Sbjct: 13 VHVSNVSLSVSESALARVF-AGCG-RVLDCRTCGDCGDKKKFAFVAFETSHEVDQALTLD 70
Query: 276 GMVLGSQPIRVSPSKTPVRPRVTRPGM 302
G V+ + IRV+ SKT V P PG+
Sbjct: 71 GFVVDGRAIRVTRSKTAVIP--VNPGL 95
>gi|238008810|gb|ACR35440.1| unknown [Zea mays]
Length = 92
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
M RTVYCTNIDK V Q +VK+FFE CG EV+RLRLLGD+VHSTRIAFVEF AE AI+
Sbjct: 1 MVMRTVYCTNIDKMVTQLDVKKFFEELCG-EVSRLRLLGDNVHSTRIAFVEFVHAEGAIM 59
Query: 271 ALNCSGMVLGSQPIRVSPSKTPVRPRVTRPG 301
ALNCSGM+LG+ P+RVSPSKTPV+PRV R G
Sbjct: 60 ALNCSGMILGTLPVRVSPSKTPVKPRVNRMG 90
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF GA AL
Sbjct: 2 VMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAEGAIMAL 61
Query: 174 NLGGTMLGYYPVRVLPSKTAILP 196
N G +LG PVRV PSKT + P
Sbjct: 62 NCSGMILGTLPVRVSPSKTPVKP 84
>gi|413918321|gb|AFW58253.1| hypothetical protein ZEAMMB73_482713 [Zea mays]
Length = 249
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 104/183 (56%), Gaps = 40/183 (21%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +C QVVDCR+CGDP+SVLRFAF+EF DE GARAALNL T+LGYYPV V
Sbjct: 32 VTEENLAALFINCRQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSRTVLGYYPVNV 91
Query: 188 LPSKTAILPVNPTFLPR-----------------SEDEREMCSRTV-------------Y 217
LPSKTAI PVN TFLPR +M S+ V
Sbjct: 92 LPSKTAIAPVNKTFLPRVCKPFGTNMLVLSSWLNVHALYDMVSKKVGRFSVLYSLTMNMK 151
Query: 218 CT--------NIDKKVPQAEVKQFFEAACGG-EVTRLRLLGDHVHSTRIA-FVEFAVAES 267
C NIDKKV QA++K FFE+ CG +V R + + + +I F++F V
Sbjct: 152 CVQGLSTAQINIDKKVTQADLKLFFESICGELKVCRNGTIKIDLETNKIMDFIKFDVGNV 211
Query: 268 AIL 270
++
Sbjct: 212 VMM 214
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 241 EVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV------- 293
+V R+ GD R AF+EF E A ALN S VLG P+ V PSKT +
Sbjct: 46 QVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSRTVLGYYPVNVLPSKTAIAPVNKTF 105
Query: 294 RPRVTRP 300
PRV +P
Sbjct: 106 LPRVCKP 112
>gi|414878000|tpg|DAA55131.1| TPA: hypothetical protein ZEAMMB73_948686 [Zea mays]
Length = 237
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 87/139 (62%), Gaps = 29/139 (20%)
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R+S R R R +YV +TEE LA LF +CGQVVDCR+ GDP+SVLRFAF
Sbjct: 70 RMSSRCVRTCR-------LYVQG--WMVTEENLATLFINCGQVVDCRMRGDPNSVLRFAF 120
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTN 220
VEF DE GARAALNL GT LGYYPV VLPSKTAI PVN TFLPR
Sbjct: 121 VEFTDEEGARAALNLSGTELGYYPVNVLPSKTAIAPVNETFLPR---------------- 164
Query: 221 IDKKVPQAEVKQFFEAACG 239
V QA++K FFE+ CG
Sbjct: 165 ----VTQADLKLFFESICG 179
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 240 GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G+V R+ GD R AFVEF E A ALN SG LG P+ V PSKT + P
Sbjct: 101 GQVVDCRMRGDPNSVLRFAFVEFTDEEGARAALNLSGTELGYYPVNVLPSKTAIAP 156
>gi|145353373|ref|XP_001420989.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357398|ref|XP_001422906.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581225|gb|ABO99282.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583150|gb|ABP01265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 183
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 109/184 (59%), Gaps = 2/184 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGAR 170
E +V TV+V D+ +++E LA +F+SCG+++DCR+CGD ++ +AFV F
Sbjct: 1 EKAVPYTVFVKDVPASVSERELADVFASCGRIIDCRMCGDANTHKFSYAFVAFECAEAVD 60
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL L T L + V S TA++PVNP LP++E E E C+RT+Y N+DK V +
Sbjct: 61 RALLLDKTPLHGKNIMVKKSDTAVIPVNPLLLPQNEREVESCARTIYVANVDKTVDSHAL 120
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
K FE G V RL L + +AFVEF ES AL+ +G LG++ IRVS SK
Sbjct: 121 KLLFEDR-AGPVNRLHLQVKNNAVANVAFVEFVDLESVGTALHLTGEQLGNRMIRVSASK 179
Query: 291 TPVR 294
TP+R
Sbjct: 180 TPLR 183
>gi|413926011|gb|AFW65943.1| hypothetical protein ZEAMMB73_108884 [Zea mays]
Length = 92
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
M SRTVYCTNIDKKV + +VK FF+ ACG +V+RLRLL D VHST IAFVEFA AESAI+
Sbjct: 1 MVSRTVYCTNIDKKVTEEDVKGFFQQACG-KVSRLRLLTDIVHSTCIAFVEFAQAESAIM 59
Query: 271 ALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
ALN SGMVLGS PIRVSPSKTPVRPR R
Sbjct: 60 ALNFSGMVLGSLPIRVSPSKTPVRPRSPR 88
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
V RTVY ++ID+ +TEE + G F +CG+V R+ D AFVEFA A AL
Sbjct: 2 VSRTVYCTNIDKKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAIMAL 61
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNP 199
N G +LG P+RV PSKT + P +P
Sbjct: 62 NFSGMVLGSLPIRVSPSKTPVRPRSP 87
>gi|227204205|dbj|BAH56954.1| AT4G10610 [Arabidopsis thaliana]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 94/136 (69%), Gaps = 7/136 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADE 166
DP+SVLRFAF+EF DE
Sbjct: 184 DPNSVLRFAFIEFTDE 199
>gi|308810827|ref|XP_003082722.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116061191|emb|CAL56579.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 650
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 118/218 (54%), Gaps = 7/218 (3%)
Query: 83 DNFNNNRRRRNNFNQG--RKRLSGRAFRAQREDSVR---RTVYVSDIDQNITEERLAGLF 137
+N +N RR N+ G R GR + R TV+V +I +++E LA F
Sbjct: 156 NNMDNQWRRANSDGSGGGRHTYHGRHSVSDERAGGRGSPNTVFVKEIPASVSERELAETF 215
Query: 138 SSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
++CG++VDCR+C D +S +AFV F + AL+L L + V S TA++P
Sbjct: 216 AACGRIVDCRMCRDANSNKFSYAFVAFETADEVQNALSLDKMSLHGKNIVVRRSDTAVIP 275
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
VNP LP++E E E +RT+Y N+DK V +K FFE G V RL L +
Sbjct: 276 VNPLLLPQNEAELESTARTIYVANVDKSVDSDALKTFFERHAGA-VNRLHLQVKNAADAN 334
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
+AFVEF ESA +L +G LG + +RVS SKTP+R
Sbjct: 335 VAFVEFVNLESAASSLRLTGKQLGQRVVRVSASKTPLR 372
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG- 177
VY+S+I +N++ L +FS CG+V + + +P S +AFVEF D A+ ALN G
Sbjct: 403 VYISNIPKNLSPGTLRAMFSECGRVTNVELLNNPKSKFPYAFVEFDDAESAKRALNFRGR 462
Query: 178 --------TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L Y R + A+ PV S D+ E RTV+ T+ID + +
Sbjct: 463 EVQGCAINIELTYNKKRRGAPRLALDPV-------SVDKME---RTVFVTDIDPDLEPSF 512
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG-SQPIRVS 287
V+ FE CG + +A++EF S AL+ C LG S+ I+V
Sbjct: 513 VRSKFEDECGPVTLFWYKAFEKGEKQALAYIEFTELSSVEKALDQCRTHFLGESRLIKVR 572
Query: 288 PSKTPVRPR 296
S TP+ P+
Sbjct: 573 HSHTPLVPK 581
>gi|414585783|tpg|DAA36354.1| TPA: hypothetical protein ZEAMMB73_057809 [Zea mays]
Length = 217
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 74/95 (77%), Gaps = 4/95 (4%)
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FAF+EF+DE GAR ALNLGGT+ G+YPVRVLPSKTA+LPVNP FLPR++DE+EM RTVY
Sbjct: 60 FAFIEFSDEEGARTALNLGGTIFGFYPVRVLPSKTAMLPVNPKFLPRTDDEKEMVMRTVY 119
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV 252
TNIDK V Q +V +FFE CG + L DHV
Sbjct: 120 RTNIDKMVTQLDVNKFFEELCGER----QCLYDHV 150
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT---PVRPR 296
AF+EF+ E A ALN G + G P+RV PSKT PV P+
Sbjct: 60 FAFIEFSDEEGARTALNLGGTIFGFYPVRVLPSKTAMLPVNPK 102
>gi|440801206|gb|ELR22227.1| RNAbinding protein, putative [Acanthamoeba castellanii str. Neff]
Length = 533
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 109/209 (52%), Gaps = 37/209 (17%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARA 171
D V TVYV+ +D + EE + LFS CG V + R+CG+ + RFAFVEF+ A
Sbjct: 159 DRVACTVYVTGVDTQLREEHVIQLFSLCGTVTNIRMCGETENKATRFAFVEFSTRESALM 218
Query: 172 ALNLGGTMLGYYPVRVLPSKTAI--------------------------LPVNPTFLPRS 205
A+ L +LG P++V+PSKTAI +PT+
Sbjct: 219 AMGLTNIVLGNAPIKVMPSKTAIQAGSRGGGGGPGGGGGPRPPHHAHAAAAFDPTY---- 274
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAV 264
+E SRT+Y +D + +AE+ Q F G VT+L + GD VH R AFVEF+
Sbjct: 275 ---QERASRTLYVGGVDSNLSEAELLQMFSGF--GTVTKLAMAGDTTVHQARFAFVEFST 329
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPV 293
A +AL +G V+G +PIRVS SKTP+
Sbjct: 330 VAEAHMALAMNGTVVGERPIRVSQSKTPI 358
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 108/234 (46%), Gaps = 59/234 (25%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
+RTVYV I N+ E L FS+C ++ R+ GDP RF F+EFA GA+ A N+
Sbjct: 13 QRTVYVGCIPSNLNSETLGHFFSTCDTIIQIRLAGDPSYSTRFGFIEFATPEGAQRACNM 72
Query: 176 GGTMLGYYPVRVLPSKTAI----------------------------------------- 194
G L +R+ SKTAI
Sbjct: 73 NGVELDGKKLRITLSKTAISSTSSHSGHSAHSAQSDASSAYASAAAGHMGLHAYGAAYGM 132
Query: 195 -------LPVNPTFLP------RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGE 241
+P +P ++R C TVY T +D ++ + V Q F + C G
Sbjct: 133 GYGAQGGMPYMHAGMPPAYAPAHGSNDRVAC--TVYVTGVDTQLREEHVIQLF-SLC-GT 188
Query: 242 VTRLRLLGDHVH-STRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
VT +R+ G+ + +TR AFVEF+ ESA++A+ + +VLG+ PI+V PSKT ++
Sbjct: 189 VTNIRMCGETENKATRFAFVEFSTRESALMAMGLTNIVLGNAPIKVMPSKTAIQ 242
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 107 FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFA 164
F ++ RT+YV +D N++E L +FS G V + GD H RFAFVEF+
Sbjct: 270 FDPTYQERASRTLYVGGVDSNLSEAELLQMFSGFGTVTKLAMAGDTTVHQA-RFAFVEFS 328
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
A AL + GT++G P+RV SKT I
Sbjct: 329 TVAEAHMALAMNGTVVGERPIRVSQSKTPI 358
>gi|413936264|gb|AFW70815.1| hypothetical protein ZEAMMB73_092717 [Zea mays]
Length = 271
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 8/129 (6%)
Query: 77 NKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQR-----EDSVRRTVYVSDIDQNITEE 131
N++ +F+ +N +N G++ +S +D + V+ I ++TEE
Sbjct: 46 NREEHGHHFSIKLILKNVYNAGQRGISCLGLGVSDRYLDDQDHILSLVFHLHISPHVTEE 105
Query: 132 RLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191
L LF +CGQVVDCR+CGDP+SVLRFAF+EFADE GARAALNL GT+LGYYPV VLPSK
Sbjct: 106 NLTTLFINCGQVVDCRMCGDPNSVLRFAFIEFADEEGARAALNLSGTVLGYYPVNVLPSK 165
Query: 192 TAILPVNPT 200
LP++ +
Sbjct: 166 ---LPLHQS 171
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA 263
R D+++ V+ +I V + + F G+V R+ GD R AF+EFA
Sbjct: 81 RYLDDQDHILSLVFHLHISPHVTEENLTTLFINC--GQVVDCRMCGDPNSVLRFAFIEFA 138
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
E A ALN SG VLG P+ V PSK P+
Sbjct: 139 DEEGARAALNLSGTVLGYYPVNVLPSKLPLH 169
>gi|413944598|gb|AFW77247.1| hypothetical protein ZEAMMB73_128485 [Zea mays]
Length = 331
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
GAR ALNLGGT+ G+YPVRVLPSKTAILPVNP FLPR++DE+EM RTVY TNIDK V Q
Sbjct: 136 GARTALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTDDEKEMVMRTVYRTNIDKMVTQ 195
Query: 228 AEVKQFFEAACG 239
+VK+FFE CG
Sbjct: 196 LDVKKFFEELCG 207
>gi|294460213|gb|ADE75689.1| unknown [Picea sitchensis]
Length = 79
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/61 (80%), Positives = 56/61 (91%)
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
MLGYYPVRVLPSKTAI PVNPTFLPR+E+EREMC+RT+YCTNIDKKV Q+++K FFE C
Sbjct: 1 MLGYYPVRVLPSKTAIAPVNPTFLPRTEEEREMCARTIYCTNIDKKVSQSDLKAFFETLC 60
Query: 239 G 239
G
Sbjct: 61 G 61
>gi|414876665|tpg|DAA53796.1| TPA: hypothetical protein ZEAMMB73_994570 [Zea mays]
Length = 266
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 75/117 (64%), Gaps = 16/117 (13%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVV+CR+CGDP+SVLRFAF+EF DE + P
Sbjct: 93 VTEENLATLFINCGQVVECRMCGDPNSVLRFAFIEFTDEVNET-----------FLPRVC 141
Query: 188 LPSKTAILPVNP-----TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PS T +L ++ S+DEREMC+RT+Y TNIDKKV QA++K FFE+ CG
Sbjct: 142 KPSGTNMLVLSSWLNVHALSDMSDDEREMCARTIYYTNIDKKVTQADLKLFFESICG 198
>gi|255079476|ref|XP_002503318.1| predicted protein [Micromonas sp. RCC299]
gi|226518584|gb|ACO64576.1| predicted protein [Micromonas sp. RCC299]
Length = 144
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 14/144 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--------------SVLRFAFVEF 163
TVYV +I +E + F +CG V +CRV DPH R AFV F
Sbjct: 1 TVYVREIPAGASEADVHDHFYTCGAVRECRVSADPHPPSKTDAGAGPDTNKKTRVAFVAF 60
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
E+ R AL + G++L P++V+PS+T ++PVNP LPR+E+ERE C+RTVY +N+D
Sbjct: 61 ETENAVREALTMDGSLLLGEPIQVMPSRTEVMPVNPGLLPRTEEERERCARTVYVSNVDP 120
Query: 224 KVPQAEVKQFFEAACGGEVTRLRL 247
V E++ EA G++ L L
Sbjct: 121 DVRSNELRSALEAIADGKIAALHL 144
>gi|413954118|gb|AFW86767.1| hypothetical protein ZEAMMB73_327506, partial [Zea mays]
Length = 81
Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/58 (82%), Positives = 53/58 (91%)
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
GARAALNL GT+LGYYP+ VL SKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV
Sbjct: 15 GARAALNLSGTVLGYYPINVLLSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKV 72
>gi|290997908|ref|XP_002681523.1| predicted protein [Naegleria gruberi]
gi|284095147|gb|EFC48779.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--------LRFAFVEFADEHG 168
RT+++S ID + +E+ L FS G + + R+C + +FAF+E+A
Sbjct: 205 RTIHISGIDSSFSEDELLDYFSVYGDITNYRLCNNDQQSSNSNTQLQTKFAFIEYATTEQ 264
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
+ A+ + G++ G ++V SKTAI P + + + R++ RT++ ID K+ Q
Sbjct: 265 SLKAIMVNGSLWGKSKLKVSHSKTAIQTPPKKSLIDK--QYRDLVERTIHVGGIDVKLSQ 322
Query: 228 AEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALNCSG-MVLGS-QPI 284
VK FFE CG + R+ + GD + TR F+EF +S + AL SG + GS + I
Sbjct: 323 DHVKAFFEELCGA-IHRIAMAGDTESYETRFCFIEFEDKQSTLRALRLSGCTIAGSVKQI 381
Query: 285 RVSPSKTPV 293
+VSPSK+P+
Sbjct: 382 KVSPSKSPI 390
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT+++ +I T E L LFS GQV + ++ GDP RFAFVEF D H A+ +L+L
Sbjct: 33 RTIHIGNISSYTTVESLQLLFSKYGQVTNIKLAGDPSYAKRFAFVEFVDHHQAKLSLSLD 92
Query: 177 GT 178
GT
Sbjct: 93 GT 94
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS--------TRIA 258
D SRT++ + ID + E+ +F + G++T RL + S T+ A
Sbjct: 198 DANSAASRTIHISGIDSSFSEDELLDYF--SVYGDITNYRLCNNDQQSSNSNTQLQTKFA 255
Query: 259 FVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
F+E+A E ++ A+ +G + G ++VS SKT ++
Sbjct: 256 FIEYATTEQSLKAIMVNGSLWGKSKLKVSHSKTAIQ 291
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
SRT++ NI ++ F G+VT ++L GD ++ R AFVEF A L+
Sbjct: 31 TSRTIHIGNISSYTTVESLQLLFSKY--GQVTNIKLAGDPSYAKRFAFVEFVDHHQAKLS 88
Query: 272 LNCSGMVLGSQPIRVSPSK 290
L+ G Q +++S +K
Sbjct: 89 LSLDGTEFMGQNLKISMAK 107
>gi|413921446|gb|AFW61378.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 206
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 86/169 (50%), Gaps = 35/169 (20%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNFA 74
E ++ L D+ +KLNP+A+EF P + F +N FA
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 75 DDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVRR 117
+ A+ + + R + + G + R AQR++++RR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
TVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE 205
>gi|224132620|ref|XP_002321367.1| predicted protein [Populus trichocarpa]
gi|222868363|gb|EEF05494.1| predicted protein [Populus trichocarpa]
Length = 74
Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/70 (71%), Positives = 58/70 (82%), Gaps = 2/70 (2%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
SEDERE+C+RT+YCTNIDKK+ QA+VK FFE+ C GEV RLRLLGD+ HSTRIAFVEFAV
Sbjct: 2 SEDEREICARTIYCTNIDKKITQADVKLFFESFC-GEVHRLRLLGDYHHSTRIAFVEFAV 60
Query: 265 A-ESAILALN 273
+S I N
Sbjct: 61 KLQSGIFCEN 70
Score = 45.8 bits (107), Expect = 0.023, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFA 164
RT+Y ++ID+ IT+ + F S CG+V R+ GD H R AFVEFA
Sbjct: 11 RTIYCTNIDKKITQADVKLFFESFCGEVHRLRLLGDYHHSTRIAFVEFA 59
>gi|328769388|gb|EGF79432.1| hypothetical protein BATDEDRAFT_35374 [Batrachochytrium
dendrobatidis JAM81]
Length = 555
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 35/212 (16%)
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRV--CGDPHSVLRFAFVEFADEHGARAALNLGGTML 180
++ + ITEE L FS G +V + C + + +++ + V+F D A AL+L GT+L
Sbjct: 22 NLSKQITEELLCQFFSFIGPIVSISLQPC-EANPLVQESLVQFQDSEDAALALHLTGTVL 80
Query: 181 GYYPVRVLPSKTAIL-----------PVNPT--------------FLPRSEDE----REM 211
+ + P I P NPT +P + ++
Sbjct: 81 ADKALFITPPSAKIQSFNSHGYLNIPPPNPTAPGVLVPGSMAGSTIVPYGQTATIAGQDS 140
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
RT+Y NI + Q EV F ++CG +VT++++ GD HSTR AF+EFA +ESA +A
Sbjct: 141 VDRTIYTGNIHSGLSQQEVSMLF-SSCG-DVTQVKMAGDATHSTRYAFIEFATSESAAMA 198
Query: 272 LNCSGMVLGSQPIRVSPSKTPV-RPRVTRPGM 302
LN GM++ + I+V+ SK + RP PGM
Sbjct: 199 LNLHGMMVAGRAIKVNRSKHSIGRPIGMYPGM 230
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+DSV RT+Y +I ++++ ++ LFSSCG V ++ GD R+AF+EFA A
Sbjct: 138 QDSVDRTIYTGNIHSGLSQQEVSMLFSSCGDVTQVKMAGDATHSTRYAFIEFATSESAAM 197
Query: 172 ALNLGGTMLGYYPVRVLPSKTAI 194
ALNL G M+ ++V SK +I
Sbjct: 198 ALNLHGMMVAGRAIKVNRSKHSI 220
>gi|440795967|gb|ELR17076.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 347
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 43/217 (19%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TV V++I TE+ L F++CG +V + GD + ++AFV F A AAL L
Sbjct: 39 TVIVTNISPLATEQDLRDFFANCGNIVQINLLGDGLGISQYAFVRFETMAQANAALTLST 98
Query: 178 TMLGYYPVRV-----------------------------------------LPSKTAILP 196
+ PV++ +P A+L
Sbjct: 99 GAVAGMPVKIVMAASDIPVGGAAAAATAALPTPLALTPGVGAASGLGLLGAIPHSLALLS 158
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
+P ++++ +RT+Y N++ + ++ QFF A CG +T RL GD H +R
Sbjct: 159 GSPANAQSYHEKQDEIARTIYVGNVNSTITSEQLMQFF-AICG-PITFCRLAGDESHPSR 216
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV 293
AF+EFA E+A A+ +G +L + ++V+ SK P+
Sbjct: 217 FAFIEFATKEAAQAAMMLNGTMLLDRAVKVNHSKNPI 253
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 102 LSGRAFRAQ----REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157
LSG AQ ++D + RT+YV +++ IT E+L F+ CG + CR+ GD R
Sbjct: 157 LSGSPANAQSYHEKQDEIARTIYVGNVNSTITSEQLMQFFAICGPITFCRLAGDESHPSR 216
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL 195
FAF+EFA + A+AA+ L GTML V+V SK I+
Sbjct: 217 FAFIEFATKEAAQAAMMLNGTMLLDRAVKVNHSKNPIV 254
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GG L PV P +LPV P F TV TNI + +++ FF
Sbjct: 11 GGEGLLSTPVSD-PGSDGLLPVPPQF----------SVSTVIVTNISPLATEQDLRDFF- 58
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV--SPSKTPV 293
A CG + ++ LLGD + ++ AFV F A AL S + P+++ + S PV
Sbjct: 59 ANCG-NIVQINLLGDGLGISQYAFVRFETMAQANAALTLSTGAVAGMPVKIVMAASDIPV 117
>gi|384249045|gb|EIE22527.1| hypothetical protein COCSUDRAFT_66269 [Coccomyxa subellipsoidea
C-169]
Length = 303
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT+YV ++ + + E L LF CG V R+ GDP R+AF+EF ++ A+ L
Sbjct: 6 RTIYVGNVGKEVDENALMALFGHCGTVTQIRIAGDPSYDTRYAFIEFTTPEESQTAMMLD 65
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID-KKVPQAEVKQFFE 235
G M+ +RV ++ P + RS D + RT++ + ++ + + +F
Sbjct: 66 GMMVFERQIRVNMARGGSGP----GVVRSNDP-DRVQRTIHIGGLPFDELSEESISDYFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV 293
GEV +R S R A+VEF ++A A++ G LGS ++VS SKTP+
Sbjct: 121 NI--GEVNAVR------KSGRFAWVEFNTLQAAQTAMSLDGESLGSGTMKVSASKTPI 170
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
+ RT+Y N+ K+V + + F CG VT++R+ GD + TR AF+EF E +
Sbjct: 2 QQSDRTIYVGNVGKEVDENALMALF-GHCG-TVTQIRIAGDPSYDTRYAFIEFTTPEESQ 59
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRPRVTR 299
A+ GM++ + IRV+ ++ P V R
Sbjct: 60 TAMMLDGMMVFERQIRVNMARGGSGPGVVR 89
>gi|291242201|ref|XP_002740997.1| PREDICTED: splicing factor, arginine/serine-rich 12-like
[Saccoglossus kowalevskii]
Length = 574
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+ +RRT+YV ++D Q +T E+L FS G+V R+ GD RFAFVEF+D++ A
Sbjct: 166 EEIRRTIYVGNLDSQTVTAEQLLNFFSQVGEVKYVRMAGDETQPTRFAFVEFSDQNSVAA 225
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 226 ALTYNGVMFGGRPLKINHSNNAIV 249
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 210 EMCSRTVYCTNIDKKVPQAE-VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
E RT+Y N+D + AE + FF GEV +R+ GD TR AFVEF+ S
Sbjct: 166 EEIRRTIYVGNLDSQTVTAEQLLNFFSQV--GEVKYVRMAGDETQPTRFAFVEFSDQNSV 223
Query: 269 ILALNCSGMVLGSQPIRVSPSKTP-VRPRVTRP 300
AL +G++ G +P++++ S V+P+ P
Sbjct: 224 AAALTYNGVMFGGRPLKINHSNNAIVKPQTKTP 256
>gi|340385705|ref|XP_003391349.1| PREDICTED: hypothetical protein LOC100639209, partial [Amphimedon
queenslandica]
Length = 358
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT+YV ++ + +++ F +CG++ R+ GD RFAFVEFA+ + A
Sbjct: 39 DEIRRTIYVGNLSSTLHADQVMNFFQTCGEIKYVRMAGDETQPTRFAFVEFANPESVQVA 98
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L G M G P++V SK AI+
Sbjct: 99 LQYNGAMFGDRPIKVNHSKNAIV 121
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GG+ VLPS + P+ P DE RT+Y N+ + +V FF+
Sbjct: 11 GGSTGQSAAAPVLPS---MPPITGNVDPSKIDE---IRRTIYVGNLSSTLHADQVMNFFQ 64
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP-VR 294
CG E+ +R+ GD TR AFVEFA ES +AL +G + G +PI+V+ SK V+
Sbjct: 65 T-CG-EIKYVRMAGDETQPTRFAFVEFANPESVQVALQYNGAMFGDRPIKVNHSKNAIVK 122
Query: 295 PRVTRP 300
P+ P
Sbjct: 123 PQGKAP 128
>gi|156392403|ref|XP_001636038.1| predicted protein [Nematostella vectensis]
gi|156223137|gb|EDO43975.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
A + + +RRTV+V+++D IT E L FSSCG + R+ GD R+A++EFA+
Sbjct: 153 ANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQA 212
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+AL G + G P++V SK A+ P P+ D + C
Sbjct: 213 IVSALQYSGAIFGGKPIKVTHSKNAV--SKPP--PKHSDRKRAC 252
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 57/231 (24%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL---RFAFVEFADEHGARAAL 173
+ + VS++ N T E+L LFS G+V D ++ + ++ + FV+F D AL
Sbjct: 11 KLIQVSNVAHNATLEQLKVLFSFIGEVEDLKLFPESPAITVQSKVCFVKFVDPSSVPIAL 70
Query: 174 NLGGTMLGYYPVRVLP---------------------------SKTAILPVNPTFLPR-- 204
+L T+ + V+P ILP P +P+
Sbjct: 71 HLTNTVFIDKSLIVVPVSDEPVSEEEKALQLVAASSALALGMGDGGGILP-TPALIPQLM 129
Query: 205 ----------------------SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV 242
++ E RTV+ N+D ++ + FF ++CG ++
Sbjct: 130 SSSGNTIAVPSSVPPPPPLTNVDANKVEEIRRTVFVNNLDPEITAEMLLSFF-SSCG-DI 187
Query: 243 TRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV 293
+R+ GD TR A++EFA ++ + AL SG + G +PI+V+ SK V
Sbjct: 188 KYIRMGGDDGKPTRYAYIEFAETQAIVSALQYSGAIFGGKPIKVTHSKNAV 238
>gi|340383093|ref|XP_003390052.1| PREDICTED: hypothetical protein LOC100637518 [Amphimedon
queenslandica]
Length = 428
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT+YV ++ + +++ F +CG++ R+ GD RFAFVEFA+ + A
Sbjct: 107 DEIRRTIYVGNLSSTLHADQVMNFFQTCGEIKYVRMAGDETQPTRFAFVEFANPESVQVA 166
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L G M G P++V SK AI+
Sbjct: 167 LQYNGAMFGDRPIKVNHSKNAIV 189
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GG+ VLPS + P+ P DE RT+Y N+ + +V FF+
Sbjct: 79 GGSTGQSAAAPVLPS---MPPITGNVDPSKIDE---IRRTIYVGNLSSTLHADQVMNFFQ 132
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
CG E+ +R+ GD TR AFVEFA ES +AL +G + G +PI+V+ SK
Sbjct: 133 T-CG-EIKYVRMAGDETQPTRFAFVEFANPESVQVALQYNGAMFGDRPIKVNHSK 185
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ N+T+ +L LFS GQVV RVC D +S L +A+V +++ ARA
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + F
Sbjct: 183 LNFAPLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHDTF 230
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G + ++ D + S FV++ ESA A+ + +GM++ +P+ V P
Sbjct: 231 SAF--GAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGP 284
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+++ K NN+ K T + L+ +F++ + F +N
Sbjct: 293 NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVV-MIGMDGKSRCFGFVNFESP 351
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVR--------RTVYVSD 123
DD + A++ N + + GR ++ S R +R E S++ + +Y+ +
Sbjct: 352 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKN 410
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D IT+++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 411 LDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMIS 470
Query: 182 YYPVRV 187
P+ V
Sbjct: 471 GKPLYV 476
>gi|340382751|ref|XP_003389881.1| PREDICTED: hypothetical protein LOC100632051 [Amphimedon
queenslandica]
Length = 475
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT+YV ++ + +++ F +CG++ R+ GD RFAFVEFA+ + A
Sbjct: 172 DEIRRTIYVGNLSSTLHADQVMNFFLTCGEIKYVRMAGDEMQPTRFAFVEFANPESVQVA 231
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L G M G P++V SK AI+
Sbjct: 232 LQYNGAMFGDRPIKVNHSKNAIV 254
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GG+ VLPS + P+ P DE RT+Y N+ + +V FF
Sbjct: 144 GGSTGQSAAAPVLPS---MPPITGNVDPSKIDE---IRRTIYVGNLSSTLHADQVMNFF- 196
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP-VR 294
CG E+ +R+ GD + TR AFVEFA ES +AL +G + G +PI+V+ SK V+
Sbjct: 197 LTCG-EIKYVRMAGDEMQPTRFAFVEFANPESVQVALQYNGAMFGDRPIKVNHSKNAIVK 255
Query: 295 PRVTRP 300
P+ P
Sbjct: 256 PQGKAP 261
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++QN+TE +L LF+ GQ+V RVC D S L + +V + + H A A
Sbjct: 27 VSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQA 86
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L + L + PV P + +PT R+ + +Y N+DK + +
Sbjct: 87 LEV----LNFTPVNGKPIRIMYSYRDPTI-------RKSGAGNIYIKNLDKAIDNKALHD 135
Query: 233 FFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F A G + ++ D S FV+F ESA A++ +GM+L + + V P
Sbjct: 136 TFSAF--GNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGP 191
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 107 FRAQREDSVRRTV--------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
+ Q E +++ TV YV ++D +IT+++L LFS G + C+V DP+ V +
Sbjct: 293 LKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKG 352
Query: 159 A-FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ FV ++ E ++A + G M+ P+ V
Sbjct: 353 SGFVAYSTAEEASKALTEMNGKMIVSKPLYV 383
>gi|224109734|ref|XP_002333211.1| predicted protein [Populus trichocarpa]
gi|222835117|gb|EEE73552.1| predicted protein [Populus trichocarpa]
Length = 50
Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/42 (73%), Positives = 34/42 (80%)
Query: 259 FVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRP 300
F++ AE AI ALNCSG VLGS PIRVSPSKTPVRPR+ RP
Sbjct: 6 FLQLLQAEGAIAALNCSGAVLGSLPIRVSPSKTPVRPRIPRP 47
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
F++ GA AALN G +LG P+RV PSKT + P P
Sbjct: 6 FLQLLQAEGAIAALNCSGAVLGSLPIRVSPSKTPVRPRIP 45
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ N+T+ +L LFS GQVV RVC D +S L +A+V +++ ARA
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + F
Sbjct: 183 LNFAPLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHDTF 230
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G + ++ D + S FV++ ESA A+ + +GM++ +P+ V P
Sbjct: 231 SAF--GAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGP 284
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+++ K NN+ K T + L+ +F++ + F +N
Sbjct: 293 NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVV-MIGMDGKSRCFGFVNFESP 351
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVR--------RTVYVSD 123
DD + A++ N + + GR ++ S R +R E S++ + +Y+ +
Sbjct: 352 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKN 410
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D IT+++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 411 LDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMIS 470
Query: 182 YYPVRV 187
P+ V
Sbjct: 471 GKPLYV 476
>gi|428166786|gb|EKX35755.1| hypothetical protein GUITHDRAFT_118030 [Guillardia theta CCMP2712]
Length = 254
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS------TRIAFVEFA 263
E S T+Y N++ + ++ QFF A CG +V +R+ GD + TR AFV+F
Sbjct: 16 EGASCTIYVGNLNPSITAEQLNQFFSAVCG-QVLHVRMAGDDPATAFRFDRTRFAFVQFL 74
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTP-VRPRVTRP 300
E A +A+ SG +LG PI+ P+K P V+PR P
Sbjct: 75 SKEQADIAMTLSGTILGGLPIKCGPAKNPIVQPRSVLP 112
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGD-PHSVLRF-----AFVEFADEHGAR 170
T+YV +++ +IT E+L FS+ CGQV+ R+ GD P + RF AFV+F + A
Sbjct: 21 TIYVGNLNPSITAEQLNQFFSAVCGQVLHVRMAGDDPATAFRFDRTRFAFVQFLSKEQAD 80
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
A+ L GT+LG P++ P+K NP PRS
Sbjct: 81 IAMTLSGTILGGLPIKCGPAK------NPIVQPRS 109
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++QN+TE +L LF+ GQVV RVC D S L + +V + + H A A
Sbjct: 27 VPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQA 86
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ + L + PV P + +PT R+ + +Y N+DK + +
Sbjct: 87 IEV----LNFTPVNGKPIRIMYSYRDPTI-------RKSGTGNIYIKNLDKAIDNKALHD 135
Query: 233 FFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F A G + ++ D + S FV+F ESA A++ +GM+L + + V P
Sbjct: 136 TFSAF--GSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGP 191
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRTV--- 119
F +N DD QS ++ N + G+ ++ S R + + E +++ TV
Sbjct: 250 FGFVNFENPDDAAQS-VEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKF 308
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
YV ++D +IT+++L LFS G + C+V DP+ V R + FV F+ E +RA
Sbjct: 309 QGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRAL 368
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 369 TEMNGKMVVSKPLYV 383
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 36/203 (17%)
Query: 108 RAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVE 162
+ +RE ++ + VYV ++ + TEE L +F G + V D + R F FV
Sbjct: 195 KQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVN 254
Query: 163 FAD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR------- 214
F + + A++ L G V ++ +SE E E+ R
Sbjct: 255 FENPDDAAQSVEALNGKTFDEKEWYVGKAQK-----------KSEREVELKGRFEQTLKE 303
Query: 215 --------TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVA 265
+Y N+D + ++K+ F G +T +++ D +R FV F+ A
Sbjct: 304 TVDKFQGLNLYVKNLDDSITDDKLKELFSEF--GTITSCKVMRDPNGVSRGSGFVAFSTA 361
Query: 266 ESAILALN-CSGMVLGSQPIRVS 287
E A AL +G ++ S+P+ V+
Sbjct: 362 EEASRALTEMNGKMVVSKPLYVA 384
>gi|441658628|ref|XP_004091274.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Nomascus leucogenys]
Length = 509
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|410948713|ref|XP_003981075.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Felis catus]
Length = 509
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|410948711|ref|XP_003981074.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Felis catus]
Length = 510
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|426384534|ref|XP_004058817.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Gorilla gorilla gorilla]
Length = 509
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|395455051|ref|NP_001257421.1| splicing regulatory glutamine/lysine-rich protein 1 isoform c [Homo
sapiens]
Length = 507
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 26/197 (13%)
Query: 111 REDSVRRTVYVSDIDQNIT----EERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFA 164
R+DS T++V D+ ++T +E ++SS +VV R+ G + FV+FA
Sbjct: 170 RDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKG---YGFVKFA 226
Query: 165 DE-HGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFL-PR-SEDEREMCSRTVYC 218
DE RA + G + P+R+ P+ K P T+ P+ ++ E + + T++
Sbjct: 227 DESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFV 286
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCS 275
+D V + ++Q F GE+ +++ V R FV+F A AE A+ +LN
Sbjct: 287 GGLDPTVAEEHLRQVFSPY--GELVHVKI----VAGKRCGFVQFGTRASAEQALSSLN-- 338
Query: 276 GMVLGSQPIRVSPSKTP 292
G LG Q IR+S ++P
Sbjct: 339 GTQLGGQSIRLSWGRSP 355
>gi|426384530|ref|XP_004058815.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Gorilla gorilla gorilla]
gi|426384532|ref|XP_004058816.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Gorilla gorilla gorilla]
Length = 510
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|21040255|ref|NP_631907.1| splicing regulatory glutamine/lysine-rich protein 1 isoform b [Homo
sapiens]
gi|37537968|sp|Q8WXA9.1|SREK1_HUMAN RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=Serine/arginine-rich-splicing regulatory
protein 86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12; AltName: Full=Splicing
regulatory protein 508; Short=SRrp508
gi|18307966|gb|AAL67778.1|AF459094_1 splicing factor, arginine/serine-rich 12 [Homo sapiens]
gi|85662678|gb|AAI12344.1| SFRS12 protein [Homo sapiens]
gi|119571715|gb|EAW51330.1| splicing factor, arginine/serine-rich 12, isoform CRA_c [Homo
sapiens]
gi|127801393|gb|AAH67770.1| Splicing factor, arginine/serine-rich 12 [Homo sapiens]
Length = 508
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|114599978|ref|XP_001162417.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Pan troglodytes]
Length = 510
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|338718814|ref|XP_003363893.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Equus caballus]
Length = 512
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|426246381|ref|XP_004016973.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Ovis aries]
gi|426246383|ref|XP_004016974.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Ovis aries]
Length = 516
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|440908499|gb|ELR58509.1| Splicing factor, arginine/serine-rich 12, partial [Bos grunniens
mutus]
Length = 534
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 80 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 139
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 140 ALAFNGVMFGDRPLKINHSNNAIV 163
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 40 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 96
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 97 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 154
Query: 286 V 286
+
Sbjct: 155 I 155
>gi|332233720|ref|XP_003266051.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Nomascus leucogenys]
gi|441658625|ref|XP_004091273.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Nomascus leucogenys]
Length = 510
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|26336164|dbj|BAC31767.1| unnamed protein product [Mus musculus]
Length = 317
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 42 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 101
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 102 ALAFNGVMFGDRPLKINHSNNAIV 125
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 15 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 62
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 63 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 117
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 21/177 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D++ ++T+ +L LFS GQVV RVC D +S L +A+V F++ A AL
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALE- 96
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + P L +K P+ + R R S ++ N+DK + + F
Sbjct: 97 ---MLNFVP---LNNK----PIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFS 146
Query: 236 AACGGEVTRLRLLGDHV-HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
A G + ++ D + S FV++ A+SA+ +LN GM++ +P+ V P
Sbjct: 147 AF--GAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLN--GMLINDKPVYVGP 199
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH---FSVINN 71
N+ + + NN+ K T + LV +F++ + + TD F IN
Sbjct: 208 NSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITS----AVVMVGTDGKSRCFGFINF 263
Query: 72 NFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVR--------RTVY 120
DD + A++ N + + GR ++ S R +R E S++ + +Y
Sbjct: 264 ESPDDAVR-AVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLY 322
Query: 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGT 178
+ ++D I++++L LFS+ G++ C+V D + V + + FV F+ E ++A + G
Sbjct: 323 LKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGK 382
Query: 179 MLGYYPVRVL-----PSKTAIL----------PVNPTFLPR 204
ML P+ V + A+L P+ P+ PR
Sbjct: 383 MLSGKPLYVAFAQRKEERKAMLQAQFSQMRPVPITPSMTPR 423
>gi|126317239|ref|XP_001381458.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Monodelphis domestica]
Length = 613
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L++ + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LSVSLSSLGAIPAAALDPNLATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|67968786|dbj|BAE00750.1| unnamed protein product [Macaca fascicularis]
Length = 510
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|426246385|ref|XP_004016975.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Ovis aries]
Length = 515
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|449278700|gb|EMC86491.1| Splicing factor, arginine/serine-rich 12 [Columba livia]
Length = 517
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P P+ P DE RTVY N++ + A +
Sbjct: 35 AALDPNITALGEIPQ---------PPIMGNVDPSKIDE---IRRTVYVGNLNSQTTTADQ 82
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 83 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 137
>gi|395510384|ref|XP_003759457.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Sarcophilus harrisii]
Length = 596
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 161 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 221 ALAFNGVMFGDRPLKINHSNNAIV 244
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L++ + LG P L A L P+ P DE RTVY N++ +
Sbjct: 121 LSVSLSSLGAIPAAALDPNLATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 177
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 178 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 235
Query: 286 V 286
+
Sbjct: 236 I 236
>gi|260821314|ref|XP_002605978.1| hypothetical protein BRAFLDRAFT_126567 [Branchiostoma floridae]
gi|229291315|gb|EEN61988.1| hypothetical protein BRAFLDRAFT_126567 [Branchiostoma floridae]
Length = 645
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV ++D +T E+L F G+V R+ GD RFAFVEFAD+
Sbjct: 204 DEIRRTVYVGNLDSATVTAEQLLNFFQQVGEVKYVRMAGDETQPTRFAFVEFADQTSVAK 263
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 264 ALQYNGIMFGNRPLKINHSNNAIV 287
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 214 RTVYCTNIDKKVPQAE-VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N+D AE + FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 208 RTVYVGNLDSATVTAEQLLNFFQQV--GEVKYVRMAGDETQPTRFAFVEFADQTSVAKAL 265
Query: 273 NCSGMVLGSQPIRVSPSKTP-VRPRVTRP 300
+G++ G++P++++ S V+P+ P
Sbjct: 266 QYNGIMFGNRPLKINHSNNAIVKPQTQTP 294
>gi|432104582|gb|ELK31194.1| Splicing regulatory glutamine/lysine-rich protein 1 [Myotis
davidii]
Length = 614
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 141 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 200
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 201 ALAFNGVMFGDRPLKINHSNNAIV 224
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 101 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 157
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 158 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 215
Query: 286 V 286
+
Sbjct: 216 I 216
>gi|403267427|ref|XP_003925834.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Saimiri boliviensis boliviensis]
Length = 630
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|39645085|gb|AAH63761.1| Sfrs12 protein, partial [Mus musculus]
Length = 407
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|74140797|dbj|BAC29709.2| unnamed protein product [Mus musculus]
Length = 401
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|344272595|ref|XP_003408117.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1-like [Loxodonta
africana]
Length = 630
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|395825410|ref|XP_003785928.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Otolemur garnettii]
Length = 617
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 151 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 198
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 199 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|26333193|dbj|BAC30314.1| unnamed protein product [Mus musculus]
Length = 318
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|426384528|ref|XP_004058814.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Gorilla gorilla gorilla]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|119571716|gb|EAW51331.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Homo
sapiens]
Length = 623
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|116089325|ref|NP_001070667.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a [Homo
sapiens]
gi|119571714|gb|EAW51329.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Homo
sapiens]
Length = 624
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|397470471|ref|XP_003806845.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Pan paniscus]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|194223833|ref|XP_001492097.2| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Equus caballus]
Length = 628
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|410948709|ref|XP_003981073.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Felis catus]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|332233718|ref|XP_003266050.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Nomascus leucogenys]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|410300176|gb|JAA28688.1| splicing regulatory glutamine/lysine-rich protein 1 [Pan
troglodytes]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|431907792|gb|ELK11399.1| Splicing factor, arginine/serine-rich 12 [Pteropus alecto]
Length = 630
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|296194448|ref|XP_002744950.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Callithrix jacchus]
Length = 630
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|301767860|ref|XP_002919343.1| PREDICTED: hypothetical protein LOC100466086 [Ailuropoda
melanoleuca]
gi|281341776|gb|EFB17360.1| hypothetical protein PANDA_007970 [Ailuropoda melanoleuca]
Length = 628
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|355691354|gb|EHH26539.1| Serine/arginine-rich-splicing regulatory protein 86 [Macaca
mulatta]
gi|355749961|gb|EHH54299.1| Serine/arginine-rich-splicing regulatory protein 86 [Macaca
fascicularis]
Length = 620
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 205 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 264
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 265 ALAFNGVMFGDRPLKINHSNNAIV 288
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 165 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 221
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 222 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 279
Query: 286 V 286
+
Sbjct: 280 I 280
>gi|345794152|ref|XP_544361.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Canis lupus familiaris]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|329663695|ref|NP_001193066.1| splicing regulatory glutamine/lysine-rich protein 1 [Bos taurus]
Length = 632
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|402871715|ref|XP_003899799.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Papio anubis]
gi|387541364|gb|AFJ71309.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a
[Macaca mulatta]
Length = 626
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++ ++I + + FS+ G ++ CRV D R +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYG 142
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A A+N + G +L V V F+PRSE ER M +
Sbjct: 143 FVHFETEEAANEAINKVNGMLLNEKKVFV-----------GKFVPRSERERMMGDKARLF 191
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFA---VAESAI 269
VY N +++ ++K+ FE G++T R++ D +R FV F AE A+
Sbjct: 192 TNVYVKNFGEELDDGKLKEMFEVY--GKITSARVMTDQTGKSRGFGFVSFENPDNAEQAV 249
Query: 270 LALN 273
LN
Sbjct: 250 KELN 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++TE L F G V+ RVC D S L +A+V F A AL+
Sbjct: 12 SLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+ + P++ P + +P+ R+ V+ N+ K + + F
Sbjct: 71 ---TMNFEPLKNRPMRIMWSQRDPSL-------RKSGVGNVFIKNLHKDIDNKAIFDTFS 120
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + R+ D ++R FV F E+A A+N +GM+L + + V
Sbjct: 121 AF--GNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFV 171
>gi|444510679|gb|ELV09695.1| Splicing regulatory glutamine/lysine-rich protein 1 [Tupaia
chinensis]
Length = 592
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 143 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 202
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 203 ALAFNGVMFGDRPLKINHSNNAIV 226
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 116 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 163
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 164 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 218
>gi|426246379|ref|XP_004016972.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Ovis aries]
Length = 632
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|354474059|ref|XP_003499249.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cricetulus griseus]
gi|344246968|gb|EGW03072.1| Splicing factor, arginine/serine-rich 12 [Cricetulus griseus]
Length = 611
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 181 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 240
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 241 ALAFNGVMFGDRPLKINHSNNAIV 264
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 154 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 201
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 202 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|351713063|gb|EHB15982.1| Splicing factor, arginine/serine-rich 12 [Heterocephalus glaber]
Length = 535
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|291395458|ref|XP_002714054.1| PREDICTED: splicing factor, arginine/serine-rich 12 [Oryctolagus
cuniculus]
Length = 618
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIAALGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|449514352|ref|XP_004177208.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1 [Taeniopygia guttata]
Length = 633
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 172 ALNLGGTMLGYYPVRVL-PSKTAI--LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
++LG LG P L P+ TA+ +P P + + RTVY N++ + A
Sbjct: 139 GVSLG--TLGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTA 196
Query: 229 -EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 197 DQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|348553835|ref|XP_003462731.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cavia porcellus]
Length = 556
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|9910564|ref|NP_064477.1| splicing regulatory glutamine/lysine-rich protein 1 [Rattus
norvegicus]
gi|37537914|sp|Q9JKL7.1|SREK1_RAT RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=SR-related protein of 86 kDa; AltName:
Full=Serine/arginine-rich-splicing regulatory protein
86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|7158880|gb|AAF37578.1|AF234765_1 serine-arginine-rich splicing regulatory protein SRRP86 [Rattus
norvegicus]
Length = 494
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + + RTVY N++ + A +
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|27369842|ref|NP_766180.1| splicing regulatory glutamine/lysine-rich protein 1 [Mus musculus]
gi|37537951|sp|Q8BZX4.1|SREK1_MOUSE RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=Serine/arginine-rich-splicing regulatory
protein 86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|26329009|dbj|BAC28243.1| unnamed protein product [Mus musculus]
gi|47682645|gb|AAH70460.1| Splicing factor, arginine/serine-rich 12 [Mus musculus]
Length = 494
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 19/181 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS+ G +++C V D H R + FV+F E ARAA+ +
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ ++PR + E+E + R +Y N ++ + +K+ F
Sbjct: 190 GILCNSQKVHVV-----------KYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMF 238
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLGSQPIRVSPSKTP 292
E G +T +++ D S R FV F +SA+ A + +G LG + + V+ + +
Sbjct: 239 EPY--GRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 293 V 293
+
Sbjct: 297 I 297
>gi|149059244|gb|EDM10251.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Rattus
norvegicus]
Length = 494
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + + RTVY N++ + A +
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|50949479|emb|CAH10414.1| hypothetical protein [Homo sapiens]
Length = 331
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>gi|74217177|dbj|BAC34905.2| unnamed protein product [Mus musculus]
Length = 513
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 181 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 240
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 241 ALAFNGVMFGDRPLKINHSNNAIV 264
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 185 RTVYVGNLNSQTTTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 242
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 243 AFNGVMFGDRPLKI 256
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-F 158
KRLSGR V+V ++D++I ++L+ +FS+ G+V+ C+V D V + +
Sbjct: 25 KRLSGRG-----------NVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGY 73
Query: 159 AFVEFADEHGARAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FV+F E A N+ GT++ + V P F+ R + + VY
Sbjct: 74 GFVQFYSELSVNIACNVRNGTLIRNQHIHVSP-----------FVSRRQWDESRVFTNVY 122
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CS 275
N+ + ++K FE GE+T ++ D +R+ FV F AE+A+ A++ +
Sbjct: 123 VKNLAETTTDDDLKMIFEEF--GEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMN 180
Query: 276 GMVLGSQPIRV 286
G ++ + + V
Sbjct: 181 GTIVDEKELHV 191
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADE 166
R E V VYV ++ + T++ L +F G++ V D R F FV F
Sbjct: 110 RQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKA 169
Query: 167 HGARAALN-LGGTMLGYYPV---RVLPSKTAILPVNPTFLPRSEDEREMCSR---TVYCT 219
A A++ + GT++ + R K I + F + +R+M +R +Y
Sbjct: 170 EAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIF-KLEKIKRDMKTRKGTNLYVK 228
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIA----FVEFAVAESAILA-LNC 274
N+D V ++++ F G + +++ VH RI+ FVEF+ +E A A L
Sbjct: 229 NLDYSVDNTKLQELFSEF--GTIISCKVM---VHPNRISKGVGFVEFSTSEEASKAMLKM 283
Query: 275 SGMVLGSQPIRVS 287
+G V+G++PI VS
Sbjct: 284 NGKVVGNKPIYVS 296
>gi|149059243|gb|EDM10250.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Rattus
norvegicus]
Length = 610
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 181 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 240
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 241 ALAFNGVMFGDRPLKINHSNNAIV 264
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 154 AALDPNITALGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 201
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 202 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V +++ A A
Sbjct: 27 VTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRA 86
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+RV+ S R R+ S ++ N+DK + +
Sbjct: 87 LDVLNFTPLNGNPIRVMYSH------------RDPSVRKSGSGNIFIKNLDKAIDHKALH 134
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D ++ FV+F E+A+ A+ +GM+L + + V P
Sbjct: 135 DTFSAF--GSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGP 191
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD 76
+ K NN+ K + + L +MF + P+ + F +N ADD
Sbjct: 202 SEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV-MRDGEGKSKCFGFVNFENADD 260
Query: 77 NKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT--------VYVSDID 125
+S ++ N + + G+ ++ S R +++ E SV+ +YV ++D
Sbjct: 261 AARS-VEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLD 319
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYY 183
+I +++L LF+ G + C+V DP+ + R + FV F+ E ARA + G M+
Sbjct: 320 DSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSK 379
Query: 184 PVRV 187
P+ V
Sbjct: 380 PLYV 383
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 23/179 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAAL 173
+++YV D++ ++T+ +L LFS GQV+ RVC D S L +A+V F + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L L P+RV+ S R R S ++ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 234 FEAACGGEVTRLRLLGDHV-HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
F A G + ++ D + S FV++ A+SAI +LN GM++ +P+ V P
Sbjct: 147 FSAF--GNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN--GMLINDKPVYVGP 201
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+ + K NN+ K T + LV +F + F IN
Sbjct: 210 NSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI-MVGMDGKSRCFGFINFKSP 268
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSD 123
DD + A++ N + + GR ++ S R +R E S++ +Y+ +
Sbjct: 269 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKN 327
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D +I +++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 328 LDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMIS 387
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
P+ V F R ED + M
Sbjct: 388 GKPLYV------------AFAQRKEDRKAML 406
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 23/179 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAAL 173
+++YV D++ ++T+ +L LFS GQV+ RVC D S L +A+V F + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L L P+RV+ S R R S ++ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 234 FEAACGGEVTRLRLLGDHV-HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
F A G + ++ D + S FV++ A+SAI +LN GM++ +P+ V P
Sbjct: 147 FSAF--GNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN--GMLINDKPVYVGP 201
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+ + K NN+ K T + LV +F + F IN
Sbjct: 210 NSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI-MVGMDGKSRCFGFINFKSP 268
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSD 123
DD + A++ N + + GR ++ S R +R E S++ +Y+ +
Sbjct: 269 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKN 327
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D +I +++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 328 LDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMIS 387
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
P+ V F R ED + M
Sbjct: 388 GKPLYV------------AFAQRKEDRKVML 406
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V +++ A A
Sbjct: 27 VTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRA 86
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+RV+ S R R+ S ++ N+DK + +
Sbjct: 87 LDVLNFTPLNGNPIRVMYSH------------RDPSVRKSGSGNIFIKNLDKAIDHKALH 134
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D S FV+F E+A+ A+ +GM+L + + V P
Sbjct: 135 DTFSAF--GSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGP 191
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD 76
+ K NN+ K + + L +MF + P+ + F +N ADD
Sbjct: 202 SEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV-MRDGEGKSKCFGFVNFENADD 260
Query: 77 NKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT--------VYVSDID 125
+S ++ N + + G+ ++ S R +++ E SV+ +YV ++D
Sbjct: 261 AARS-VEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLD 319
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYY 183
+I +++L LF+ G + C+V DP+ + R + FV F+ E ARA + G M+
Sbjct: 320 DSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSK 379
Query: 184 PVRV 187
P+ V
Sbjct: 380 PLYV 383
>gi|193704514|ref|XP_001944340.1| PREDICTED: hypothetical protein LOC100161931 [Acyrthosiphon pisum]
Length = 673
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 107 FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
+ ++R + +RRT+ ++D+N+T++ L G F G V R C + + R+A VE++++
Sbjct: 165 YDSRRIEEIRRTLAAINVDENVTDDELIGFFQKAGDVKYVRWCSRENDITRYALVEYSEQ 224
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAI 194
A L L G LG PV+V + AI
Sbjct: 225 ASVIAGLKLNGVQLGSRPVQVTHATQAI 252
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 162 EFADEHGARAALNLGGTMLGYYP------------VRVLPSKTAILPVNPTF-------- 201
+ DE+ A N + G YP + +P I+ +P
Sbjct: 99 DIPDEYRALDIANQANIVPGLYPSDPKLPAHVVNQIEGIPPNQVIVTNDPVLASNGLPPY 158
Query: 202 --LPRSEDER--EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRI 257
LP + D R E RT+ N+D+ V E+ FF+ A G+V +R TR
Sbjct: 159 PQLPITYDSRRIEEIRRTLAAINVDENVTDDELIGFFQKA--GDVKYVRWCSRENDITRY 216
Query: 258 AFVEFAVAESAILALNCSGMVLGSQPIRVS 287
A VE++ S I L +G+ LGS+P++V+
Sbjct: 217 ALVEYSEQASVIAGLKLNGVQLGSRPVQVT 246
>gi|148686563|gb|EDL18510.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Mus
musculus]
Length = 519
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 90 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 149
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 150 ALAFNGVMFGDRPLKINHSNNAIV 173
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 63 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 110
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 111 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 165
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D ++T+ +L LF+ GQVV R+C D S L + +V F++ H A A++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S R R+ + ++ N+D+ + + F
Sbjct: 85 LNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAIDHKALYDTF 132
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
+ G + ++ D ++ FV+F ESA A++ +GM+L +P+ V
Sbjct: 133 --SIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 107 FRAQREDSVRRTV--------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
+ + E S++ TV Y+ ++D ++T+E+L+ LFS G V C++ DP + R
Sbjct: 288 LKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347
Query: 159 A-FVEFAD-EHGARAALNLGGTMLGYYPVRVLPSK 191
+ FV F+ E RA + G M+ P+ V P++
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 23/179 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAAL 173
+++YV D++ ++T+ +L LFS GQV+ RVC D S L +A+V F + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L L P+RV+ S R R S ++ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 234 FEAACGGEVTRLRLLGDHV-HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
F A G + ++ D + S FV++ A+SAI +LN GM++ +P+ V P
Sbjct: 147 FSAF--GNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN--GMLINDKPVYVGP 201
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+ + K NN+ K T + LV +F + F IN
Sbjct: 210 NSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI-MVGMDGKSRCFGFINFKSP 268
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSD 123
DD + A++ N + + GR ++ S R +R E S++ +Y+ +
Sbjct: 269 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKN 327
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA 164
+D +I +++L LFS+ G++ C++ D + V + + FV F+
Sbjct: 328 LDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFS 369
>gi|148686566|gb|EDL18513.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Mus
musculus]
Length = 626
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 197 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 256
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 257 ALAFNGVMFGDRPLKINHSNNAIV 280
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 170 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 217
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 218 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 272
>gi|363744206|ref|XP_424756.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Gallus gallus]
Length = 621
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 180 LGYYPVRVL-PSKTAI--LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-EVKQFFE 235
LG P L P+ TA+ +P P + + RTVY N++ + A ++ +FF+
Sbjct: 145 LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFK 204
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 205 QV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|193787205|dbj|BAG52411.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|297294417|ref|XP_001087835.2| PREDICTED: hypothetical protein LOC697731 isoform 1 [Macaca
mulatta]
Length = 516
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 194
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 195 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 252
Query: 286 V 286
+
Sbjct: 253 I 253
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 21/198 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S +T+YV ++D ++TEE L LFS G V C++ + S+ FAF+E+A+ A+
Sbjct: 3 EESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRE-TSIDPFAFIEYANHQSAQT 61
Query: 172 AL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL + M +RV + +A P+++ + ++ ++ ++ +
Sbjct: 62 ALAAMNKRMFLKKEIRVNWATSA------GNQPKTDTSQH---HHIFVGDLSPEIDTETL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI +N G LGS+ IR
Sbjct: 113 REAF--APFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAMMN--GQWLGSRSIR 168
Query: 286 VSPS-KTPVRPRVTRPGM 302
+ S + P PR G+
Sbjct: 169 TNWSTRKPPAPRENSKGI 186
>gi|350594366|ref|XP_003134051.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1,
partial [Sus scrofa]
Length = 587
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 216 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 275
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 276 ALAFNGVMFGDRPLKINHSNNAIV 299
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 220 RTVYVGNLNSQTTTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 277
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 278 AFNGVMFGDRPLKI 291
>gi|301609359|ref|XP_002934235.1| PREDICTED: hypothetical protein LOC100329115 [Xenopus (Silurana)
tropicalis]
Length = 566
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRT+YV +++ Q T E+L F G V R+ GD RFAFVEF+D++
Sbjct: 198 DEIRRTIYVGNLNSQTTTAEQLLEFFKQVGDVRFVRMAGDETQPTRFAFVEFSDQNSVTR 257
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 258 ALTFNGVMFGDRPLKINHSNNAIV 281
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 187 VLPSKTAILPV-----NPTFL----PRSEDEREMCSRTVYCTNIDKKVPQAE-VKQFFEA 236
VLP+ T +P P + P DE RT+Y N++ + AE + +FF+
Sbjct: 169 VLPALTPAIPAVADLPQPPLMGNVDPTKVDE---IRRTIYVGNLNSQTTTAEQLLEFFKQ 225
Query: 237 ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
G+V +R+ GD TR AFVEF+ S AL +G++ G +P+++
Sbjct: 226 V--GDVRFVRMAGDETQPTRFAFVEFSDQNSVTRALTFNGVMFGDRPLKI 273
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D ++T+ +L LF+ GQVV R+C D S L + +V F++ H A A++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S R R+ + ++ N+D+ + + F
Sbjct: 85 LNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAIDHKALYDTF 132
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
+ G + ++ D ++ FV+F ESA A++ +GM+L +P+ V
Sbjct: 133 --SIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 107 FRAQREDSVRRTV--------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
+ + E S++ TV Y+ ++D ++T+E+L+ LFS G V C++ DP + R
Sbjct: 288 LKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347
Query: 159 A-FVEFAD-EHGARAALNLGGTMLGYYPVRVLPSK 191
+ FV F+ E RA + G M+ P+ V P++
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
>gi|28703790|gb|AAH47322.1| Similar to expressed sequence AI450757, partial [Homo sapiens]
Length = 386
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 239
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 240 AFNGVMFGDRPLKI 253
>gi|380792715|gb|AFE68233.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a,
partial [Macaca mulatta]
Length = 394
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 239
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 240 AFNGVMFGDRPLKI 253
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FSS G V+ RVC D S L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLLRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKTIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + ++ D +S FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|348524300|ref|XP_003449661.1| PREDICTED: hypothetical protein LOC100695937 [Oreochromis
niloticus]
Length = 459
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T E+L F G V R+ GD RFAFVEF ++
Sbjct: 161 DEIRRTVYVGNLNSQTTTAEQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQESVAR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL L G M G P++V S AI+
Sbjct: 221 ALTLNGVMFGDRPLKVNHSNNAIV 244
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQAE-VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + AE + +FF+ G+V +R+ GD TR AFVEF ES AL
Sbjct: 165 RTVYVGNLNSQTTTAEQLLEFFKQV--GDVKFVRMAGDETQPTRFAFVEFVEQESVARAL 222
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P++V
Sbjct: 223 TLNGVMFGDRPLKV 236
>gi|57525681|ref|NP_001003613.1| splicing regulatory glutamine/lysine-rich protein 1 [Danio rerio]
gi|50417233|gb|AAH78219.1| Zgc:100974 [Danio rerio]
Length = 512
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q+ T ++L F G V R+ GD RFAFVEFAD+
Sbjct: 164 DEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVAR 223
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 224 ALTYNGVMFGDRPLKINHSNNAIV 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ G+V +R+ GD TR AFVEFA +S AL
Sbjct: 168 RTVYVGNLNSQSTTADQLLKFFKQV--GDVKFVRMAGDETQPTRFAFVEFADQDSVARAL 225
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 226 TYNGVMFGDRPLKI 239
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E++ +T+YV ++D ++TE+ L LFS G V C++ +P++ +AFVEF + A
Sbjct: 5 EENYPKTLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPNND-PYAFVEFVNHQAAST 63
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL + VL + + VN P ++ +++ S ++ ++ ++ +
Sbjct: 64 AL------IAMNKRHVLEKE---IKVNWATSPGNQPKQDTSSHHHIFVGDLSPEIEMHTL 114
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AESAI A+N G LG++ IR
Sbjct: 115 REAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAESAIHAMN--GQWLGNRSIR 170
Query: 286 VSPS-KTPVRPRVTR 299
+ S + P PR R
Sbjct: 171 TNWSTRKPPPPRTER 185
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 31/184 (16%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
+ +++ S ++V D+ I L F+ G++ +CR+ DP ++ +AFV F
Sbjct: 89 QPKQDTSSHHHIFVGDLSPEIEMHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 148
Query: 166 EHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR---------- 214
+ A +A++ + G LG +R S P PR+E R+ ++
Sbjct: 149 KAEAESAIHAMNGQWLGNRSIRTNWSTRKPPP------PRTERSRQGNAKAVSYEEVYNQ 202
Query: 215 ------TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
TVYC + + +++ F G + +R D + AF+ F+ E+A
Sbjct: 203 SSPTNCTVYCGGFTNGINEDLIEKAFSRF--GTIQDIRSFKDKGY----AFIRFSTKEAA 256
Query: 269 ILAL 272
A+
Sbjct: 257 THAI 260
>gi|198429455|ref|XP_002129672.1| PREDICTED: similar to splicing factor, arginine/serine-rich 12
[Ciona intestinalis]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 103 SGRAFRAQREDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+G + D ++RT+YV ++D + T ++L F +CG+V R+ GD RFAF+
Sbjct: 106 AGGVIDQTKLDEIKRTIYVGNLDSKQATADQLMTFFGTCGEVKFVRMAGDETQPTRFAFI 165
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL-----PVNPT 200
EFA +A+ L GT+ G +++ S AI+ PVN T
Sbjct: 166 EFAKIEHVDSAMKLNGTLFGDRALKINHSNNAIVKPAVKPVNDT 209
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 19/200 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCG---DPHSV-LRFAFVEFADEHGARAALN 174
+ V++I T E++ LF G V+ + DP++ + AF+++AD A +
Sbjct: 7 IQVTNIAPTATLEQIHTLFDHLGTFVEFELFPRNPDPNNPGTKVAFIKYADPSSVGVAQH 66
Query: 175 LGGTMLGYYPVRVLPSKTAILP---------VNPTFLPRS-----EDEREMCSRTVYCTN 220
L T+ + +P I+P T L ++ + + + RT+Y N
Sbjct: 67 LTSTVFIDRALICVPYTDGIIPNETVAMQFATPATALIQAGGVIDQTKLDEIKRTIYVGN 126
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLG 280
+D K A+ F CG EV +R+ GD TR AF+EFA E A+ +G + G
Sbjct: 127 LDSKQATADQLMTFFGTCG-EVKFVRMAGDETQPTRFAFIEFAKIEHVDSAMKLNGTLFG 185
Query: 281 SQPIRVSPSKTPVRPRVTRP 300
+ ++++ S + +P
Sbjct: 186 DRALKINHSNNAIVKPAVKP 205
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ N++E +L LF+ GQVV RVC D L +A+V + A A
Sbjct: 26 VSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRA 85
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L ++L P+R++ F R R+ + ++ N+DK + +
Sbjct: 86 LELLNFSVLNGNPIRIM------------FSHRDPSIRKSGTANIFIKNLDKTIDNKALH 133
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G ++ + G S FV+F ESA+ A+ +GM+L + + V P
Sbjct: 134 DTFSAFGGILSCKVAVDGSG-QSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGP 190
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR-KRLSGR------AFRAQREDSVRR----TVYVSDI 124
DN A++ N +R + GR ++ S R F +R++ + + +Y+ ++
Sbjct: 258 DNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNL 317
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGY 182
D + +E+L LF+ G + C+V DP R + FV F+ E RA + G M+G
Sbjct: 318 DDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGS 377
Query: 183 YPVRVLPS-----------------KTAILPVNPTFLP 203
P+ V + +T++ P PT LP
Sbjct: 378 KPLYVALAQRKEERRARLQAAFAQMRTSVSPAVPTSLP 415
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA-DEHGARAALNLG 176
VYV ++ +N TE+ L +F + G + V D + F FV F ++ A+A L
Sbjct: 209 VYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALN 268
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
G +Y R + F R E + +Y N+D V ++++
Sbjct: 269 GKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRE 328
Query: 233 FFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F A G +T +++ D +R FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 329 LF--ADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVA 383
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAA 172
S R V+V ++D++I ++L +FS+ G+V+ C+V D V + + FV+F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 173 LNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
N GT++ + V P F+ R + ++ VY N+ + A++K
Sbjct: 88 CNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLK 136
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPS 289
+ F GE+T ++ D S R FV F AE+A+ A+ +G+V+ + + V +
Sbjct: 137 RLFGEF--GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Query: 290 K 290
+
Sbjct: 195 Q 195
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 24/197 (12%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R ++R+ S R + V+V ++D++I ++L +FS+ G+V+ C+V D
Sbjct: 8 KLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS 67
Query: 154 SVLR-FAFVEFADEHGARAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
V + + FV+F + A N GT++ + V P F+ R + ++
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSR 116
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAIL 270
VY N+ + A++K+ F GE+T ++ D S R FV F AE+A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEF--GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVT 174
Query: 271 AL-NCSGMVLGSQPIRV 286
A+ +G+V+ + + V
Sbjct: 175 AIEKMNGVVVDEKELHV 191
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA-DEHGARAALNLG 176
+YV ++D ++ +L LFS G + C+V + + + FVEF+ E ++A L +
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 285 GKMVGNKPIYV 295
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L +F+ GQVV RVC D + L + +V +++ A A
Sbjct: 27 VTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 86
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+RV+ S R R+ + ++ N+DK + +
Sbjct: 87 LDVLNFTPLNGKPIRVMYSH------------RDPSIRKSGAGNIFIKNLDKAIDHKALH 134
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F +A G ++ L S FV+F ESA+ A+ +GM+L + + V P
Sbjct: 135 DTF-SAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGP 191
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LF+ G + C+V DP+ + R + FV F+ + +RA + +
Sbjct: 313 LYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMN 372
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 373 GKMVVSKPLYV 383
>gi|443735038|gb|ELU18893.1| hypothetical protein CAPTEDRAFT_226786 [Capitella teleta]
Length = 518
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT++V ++D T E+L F+ G+V R+ GD RFAFVEF ++ A
Sbjct: 163 DEIRRTIFVGNLDSISTPEQLLQFFTQAGEVKYVRMAGDETLPTRFAFVEFTEQASLLKA 222
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L L G++ PVRV S AI+
Sbjct: 223 LVLNGSLFSGRPVRVNHSNVAIV 245
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 195 LPVNPTFLPRSEDEREM--CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV 252
LP P LP D ++ RT++ N+D ++ QFF A GEV +R+ GD
Sbjct: 147 LPSYP-LLPGGTDPSKVDEIRRTIFVGNLDSISTPEQLLQFFTQA--GEVKYVRMAGDET 203
Query: 253 HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
TR AFVEF S + AL +G + +P+RV
Sbjct: 204 LPTRFAFVEFTEQASLLKALVLNGSLFSGRPVRV 237
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
>gi|413941688|gb|AFW74337.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 50
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 257 IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGMH 303
I F+ F AESA ALNCSG++LGS PIRVSPSKTPVRPR R MH
Sbjct: 5 ICFLIFQ-AESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 50
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ ++++ +L LFS GQVV RVC D S L +A+V F++ ARA
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L +L P+RV+ S R R S ++ N+DK + + + F
Sbjct: 107 LNFAVLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHETF 154
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV++ A++AI +LN GM++ +P+ V P
Sbjct: 155 SSF--GTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLN--GMLINDKPVFVGP 208
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALNCSGMVLG 280
AE A+L LN + G
Sbjct: 244 AAEQAVLELNGKEVAEG 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALN 273
AE A+L LN
Sbjct: 244 AAEQAVLELN 253
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALN 273
AE A+L LN
Sbjct: 244 AAEQAVLELN 253
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
>gi|296475869|tpg|DAA17984.1| TPA: splicing factor, arginine/serine-rich 12-like [Bos taurus]
Length = 325
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 130 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 189
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 190 ALAFNGVMFGDRPLKINHSNNAIV 213
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 134 RTVYVGNLNSQTTTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 191
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 192 AFNGVMFGDRPLKI 205
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALNCSGMVLG 280
AE A+L LN + G
Sbjct: 244 AAEQAVLELNGKEVAEG 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVG 172
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALN 273
AE A+L LN
Sbjct: 244 AAEQAVLELN 253
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVG 172
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALNCSGMVLG 280
AE A+L LN + G
Sbjct: 244 AAEQAVLELNGKEVAEG 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
>gi|413944368|gb|AFW77017.1| hypothetical protein ZEAMMB73_226641 [Zea mays]
Length = 273
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
+G V V A L +N +S+DE EMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 157 IGVENVGVTEENLAALFIN---CGQSDDECEMCARTIYCTNIDKKVTQADLKLFFESICG 213
>gi|326524289|dbj|BAK00528.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 429
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 31/217 (14%)
Query: 109 AQREDSVRR-TVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLR--FAFVEFA 164
QRED+ ++V D+ +T+ L FS+ D RV D + + FV F
Sbjct: 137 GQREDTTDHFHIFVGDLSPEVTDSALFAFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFR 196
Query: 165 DEHGARAALN-LGGTMLGYYPVR--------------VLPSKTAILPVNPTFLPRSED-- 207
++ A++A+N L G LG +R + +I+ VN F ++
Sbjct: 197 NQQDAQSAINDLNGQWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVNNNFTENAKQKS 256
Query: 208 -----EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
E RTVY N+ +V Q + +FF A G + +R+ H FV++
Sbjct: 257 NEDAPENNPLYRTVYVGNLAHEVTQDVLHRFFHALGAGAIEEVRVQ----HGKGFGFVKY 312
Query: 263 A-VAESAILALNCSGMVLGSQPIRVSPSKTPVRPRVT 298
+ AE+A+ +G +LG +P++ S P P T
Sbjct: 313 SNHAETALAIQTGNGRILGGKPVKCSWGNKPTPPGTT 349
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE-HGAR 170
+ S R+VYV +I +TE L +F S G V C++ S + FV++ + A
Sbjct: 56 DTSTCRSVYVGNIHVQVTEALLREVFQSAGSVDGCKLIRKEKS--SYGFVDYYERGSAAL 113
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVYCTNIDKKVPQA 228
A L L G + P+R VN + + +RE + ++ ++ +V +
Sbjct: 114 AILTLNGKQIFGQPIR----------VNWAY---ASGQREDTTDHFHIFVGDLSPEVTDS 160
Query: 229 EVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285
+ FF +A + R++ D S FV F + A A+N +G LG++ IR
Sbjct: 161 ALFAFF-SAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNRQIR 219
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L LFS QVV RVC D H L + +V + D E ARA
Sbjct: 170 SLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDV 229
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S R R+ + ++ N+DK + + F
Sbjct: 230 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKGIDHKALHDTF 277
Query: 235 EAACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ D ++ FV+F E+A A++ +GM+L + + V P
Sbjct: 278 SAF--GNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 331
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LF+ G + C+V DP+ + R + FV F+ E +RA +
Sbjct: 453 LYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMN 512
Query: 177 GTMLGYYPVRV 187
M+ P+ V
Sbjct: 513 SKMVVSKPLYV 523
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAA 172
S R V+V ++D++I ++L +FS+ G+V+ C+V D V + + FV+F + A
Sbjct: 99 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 158
Query: 173 LNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
N GT++ + V P F+ R + ++ VY N+ + A++K
Sbjct: 159 CNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLK 207
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPS 289
+ F GE+T ++ D S R FV F AE+A+ A+ +G+V+ + + V +
Sbjct: 208 RLFGEF--GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 265
Query: 290 K 290
+
Sbjct: 266 Q 266
>gi|414584705|tpg|DAA35276.1| TPA: hypothetical protein ZEAMMB73_072205 [Zea mays]
Length = 364
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 185 VRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
++V A L +N +S+DEREMC+RT+YCTNIDKKV Q + K FFE+ CG
Sbjct: 245 IKVTEENLATLFIN---CGQSDDEREMCARTIYCTNIDKKVTQTDPKLFFESKCG 296
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 13/205 (6%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149
RR+ F+ + A + ++ + R +YV +I + T E LA +F CG V V
Sbjct: 46 RRKRVFSTKAQVQVQEAVQGGKQKEIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVM 105
Query: 150 GDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
D ++ RFAFV + A+AA+ + GT +G RV+ P++ + L R
Sbjct: 106 YDKYTKRSRRFAFVTMSTVEDAQAAIEKMNGTEIGG---RVIKVNITEKPLDVSGLNRLT 162
Query: 207 DEREMCSR--TVYCTNIDKKVPQAEVKQFFEA---ACGGEVTRLRLLGDHVHSTRIAFVE 261
+E E VY N+ K V +K+ F +VTR+ G ++F
Sbjct: 163 EEAEFIDSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSS 222
Query: 262 FAVAESAILALNCSGMVLGSQPIRV 286
A E+AI A N +VL +P+RV
Sbjct: 223 EADVEAAISAFN--NVVLEGKPMRV 245
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
VYV + ++ +E+L F G++ +V + F FV F A AA+ L
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 177 GTMLG----YYPVRVLPSKTAILPVNPTFLPRSEDERE-MCSRTVYCTNIDKKVPQAEVK 231
G +G Y R + F + E + +Y N+D + ++
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ D S FV F A A A+ +G V+GS+P+ V+
Sbjct: 305 IAFSPY--GNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVA 360
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R V+ N+D+ + + F
Sbjct: 63 MNFDLLRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
VYV + ++ +E+L F G++ +V + F FV F A AA+ L
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 177 GTMLG----YYPVRVLPSKTAILPVNPTFLPRSEDERE-MCSRTVYCTNIDKKVPQAEVK 231
G +G Y R + F + E + +Y N+D + ++
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ D ++ FV F A A A+ +G V+GS+P+ V+
Sbjct: 305 IAFSPY--GNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVA 360
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 29/198 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D + + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYG 142
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEKAKLF 191
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG-DHVHSTRIAFVEF---AVAESAI 269
VY N + + + +++ FE G++T +++ D S FV F AE+A+
Sbjct: 192 TNVYVKNFGEDLSEEQLRNMFEKF--GKITSYKVMSKDDGKSKGFGFVAFESPEAAETAV 249
Query: 270 LALNCSGMVLGSQPIRVS 287
ALN +V G +P+ V
Sbjct: 250 DALNGKELVEG-KPLYVG 266
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+D+ + + F
Sbjct: 72 MNFDLIRGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A ++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
>gi|148686564|gb|EDL18511.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Mus
musculus]
Length = 223
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 90 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 149
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 150 ALAFNGVMFGDRPLKINHSNNAIV 173
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 94 RTVYVGNLNSQTTTADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 151
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 152 AFNGVMFGDRPLKI 165
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S RT+YV ++D ++TEE L LF++ G V C+V +P S +AF+EF GA
Sbjct: 3 DESNPRTLYVGNLDPSVTEELLCALFTNIGPVNACKVIREPGSD-PYAFLEFDTHSGAAT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL M G R+ K + VN P ++ + + + Y + P+ E
Sbjct: 62 AL---AAMNG----RLFLDKE--MKVNWATTPGNQPKLDTSNH--YHIFVGDLSPEIETH 110
Query: 232 QFFEA-ACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
EA A GE++ R++ D + S AFV F + AE+AI ++N G LGS+ IR
Sbjct: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSDAENAINSMN--GQWLGSRSIR 168
Query: 286 VSPS-KTPVRPRV 297
+ S + P PR
Sbjct: 169 TNWSTRKPPPPRA 181
>gi|327263062|ref|XP_003216340.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Anolis carolinensis]
Length = 626
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 177 DEIRRTVYVGNLNSQTTTADQLLEFFKPVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 236
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G + G P+++ S AI+
Sbjct: 237 ALAFNGVVFGDRPLKINHSNNAIV 260
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ GEV +R+ GD TR AFVEFA S AL
Sbjct: 181 RTVYVGNLNSQTTTADQLLEFFKPV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 238
Query: 273 NCSGMVLGSQPIRV 286
+G+V G +P+++
Sbjct: 239 AFNGVVFGDRPLKI 252
>gi|115620271|ref|XP_781643.2| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Strongylocentrotus purpuratus]
Length = 890
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADE 166
+ +R+++ RTV+V ++ N+TE+R+ +FS CG V D R+ + + + +VEF DE
Sbjct: 609 KPERDNNDPRTVFVKNLGYNVTEKRIRKVFSECGTVRDVRMVTNYQKKFKGYCYVEFEDE 668
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKT-AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+ AL + P+ V PSK + P FL E +M ++ + + + +
Sbjct: 669 ESAKKALKKDRETINDRPMYVDPSKDRSGAPAEKKFLY----ENKMEKNKLFVSGLPRTL 724
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQ 282
E+++ F + R+ V +A+V+F A A A++ L+ + +G
Sbjct: 725 TTEELEKTFSKFGKLKGVRIVTFKSGVPKG-LAYVDFENEASATRAVMGLDNTQ--IGEH 781
Query: 283 PIRVSPSKTPVR 294
I V+ S P R
Sbjct: 782 TITVAISNPPTR 793
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +A+ AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAV 240
Query: 270 LALNCSGM 277
ALN M
Sbjct: 241 QALNGKDM 248
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRDKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKDMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALNCSGMVLG 280
AE A+L LN + G
Sbjct: 244 AAEQAVLELNGKEVAEG 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D+D +++E L +F+ GQVV RVC D L +A+V + A A
Sbjct: 24 VAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQA 83
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L T++ P+R++ S R R+ + ++ N++K + +
Sbjct: 84 LELLNFTLVKGKPIRIMYSH------------RDPSIRKSGAANIFIKNLEKSIDNKALH 131
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + R++ D +++ FV+F ESA +A+ +GM++ + + V+P
Sbjct: 132 DTFSAF--GTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAP 188
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 10/177 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLG 176
VYV ++ + T+E L +F+ G + V D + F FV F + + A A NL
Sbjct: 206 VYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLN 265
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTFLP-RSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
G ++ +Y R + F R E E + +Y NID + ++++
Sbjct: 266 GKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRE 325
Query: 233 FFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F A G VT +++ S FV F+ E A+ A+N +G ++GS+P+ V+
Sbjct: 326 LF--AVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVA 380
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR--KRLSGRAFRAQREDSVRR---------TVYVSDI 124
D+ +A++N N + GR K+ A + + VR+ +Y+ +I
Sbjct: 255 DDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNI 314
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEF-ADEHGARAALNLGGTMLGY 182
D +I +E+L LF+ G V C+V P + FV F A E +A ++ G M+G
Sbjct: 315 DDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGS 374
Query: 183 YPVRV 187
P+ V
Sbjct: 375 KPLYV 379
>gi|358055852|dbj|GAA98197.1| hypothetical protein E5Q_04880 [Mixia osmundae IAM 14324]
Length = 545
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+ V+V + IT E L F SCG++V RV D + F +V+F D GA+AAL
Sbjct: 288 KNVFVGGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDFVDAAGAKAALE 347
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE--DEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ GT L + V S P P+ + DE S+TV+ N+ + Q V +
Sbjct: 348 MAGTELDGRTINVDLSAPRPPRDGPGATPKKQFNDELSAPSQTVFVGNLSFESTQDAVWE 407
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
F G R+ + A+VEF +SA A++
Sbjct: 408 SFSDFGGVNSVRVPTDMETGRPKGFAYVEFGDVDSAKKAVD 448
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 31/190 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K FE G +T + ++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKDMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALN 273
AE A+L LN
Sbjct: 244 AAEQAVLELN 253
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D ++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
>gi|405961668|gb|EKC27433.1| Putative splicing factor, arginine/serine-rich 7 [Crassostrea
gigas]
Length = 449
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
L G A+ E+ +RRTVYV ++ +N+T E+L FS G+V R+ GD + A+V
Sbjct: 150 LPGNTDPAKIEE-IRRTVYVGNLAKNVTTEQLLSFFSQVGEVKYVRMAGDEKQPTKNAYV 208
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL-PVNPT 200
EF D+ AL G M P+ V + I+ P++ T
Sbjct: 209 EFTDQRSISTALTYNGVMFQTLPISVTHATACIIKPISKT 248
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 65/237 (27%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-------GDPHSVLRFAFVEFA 164
E + + +++I N T++++ LF G++ +C++ GD + + +V++
Sbjct: 3 EKITTKVIQITNIAPNATKDQMKTLFGYLGRIDECKMYPSNELPEGDTST--KVCYVKYD 60
Query: 165 DEHGARAALNLGGT------------MLGYYP-----VRVLPSKTA-ILPVNPTF----- 201
D + AL+L T M G P +++ PS A ++P P++
Sbjct: 61 DSVSSGIALHLTNTVFIDRALIIVPVMDGKIPDETTALQIAPSAIAGMIPGTPSWPSNVI 120
Query: 202 -----------------------------LPRSED--EREMCSRTVYCTNIDKKVPQAEV 230
LP + D + E RTVY N+ K V ++
Sbjct: 121 SQMTGTGLTQMITTHDPKLTALGLLQYPPLPGNTDPAKIEEIRRTVYVGNLAKNVTTEQL 180
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
FF GEV +R+ GD T+ A+VEF S AL +G++ + PI V+
Sbjct: 181 LSFFSQV--GEVKYVRMAGDEKQPTKNAYVEFTDQRSISTALTYNGVMFQTLPISVT 235
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 29/202 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFVEFADEH 167
E+S +T+YV ++D ++TEE L LFS G V C++ DP +AF+E+A
Sbjct: 3 EESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP-----YAFIEYASHT 57
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A+ A L ++ + + A P N P+++ + Y + P+
Sbjct: 58 SAQTA--LAAMNKRFFLKKEIKVNWATSPGN---QPKTDTSQH------YHIFVGDLSPE 106
Query: 228 AEVKQFFEA-ACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGS 281
E + EA A GE++ R++ D + S AFV F A AE+AI +N G LGS
Sbjct: 107 IETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMN--GQWLGS 164
Query: 282 QPIRVSPS-KTPVRPRVTRPGM 302
+ IR + S + P PR G+
Sbjct: 165 RSIRTNWSTRKPPAPRDNSKGI 186
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D + + L F+ CG+V+ C+V D + + FV+F GA+AAL + G
Sbjct: 101 VFVKKLDTAVNAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAALEMDG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFFE 235
+ LG V V P FL R + E R +Y N+ V +A+VK E
Sbjct: 161 SKLGDCEVVVAP-----------FLRRVDREVMAAKSFRNIYIKNLKATVAEADVKTTVE 209
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
G+V L L T+ A V F E+A+ A+
Sbjct: 210 TF--GKVNSLFLSEHAPFPTKFALVAFEEHEAAVKAI 244
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 74/180 (41%), Gaps = 21/180 (11%)
Query: 116 RRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF---ADEHG 168
R +VYV D ID EE + LFS+ VV +VC D L + +V F AD
Sbjct: 7 RTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEK 66
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ALN G G +RV+ F R +R+ V+ +D V
Sbjct: 67 VIDALNYTGITPGRQ-IRVM------------FSIRDPIQRKSGMNNVFVKKLDTAVNAK 113
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
E++ F CG ++ L +S FV+F A+ A AL G LG + V+P
Sbjct: 114 ELQAAF-TKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAALEMDGSKLGDCEVVVAP 172
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +YV + +IT++RL +F+ G++ C + +P+ + FAFV F D A AAL
Sbjct: 289 RNLYVKHLPDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAAL 346
>gi|224128984|ref|XP_002328861.1| predicted protein [Populus trichocarpa]
gi|222839291|gb|EEE77628.1| predicted protein [Populus trichocarpa]
Length = 950
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG +A++ED++++T++VS++ +T E+L LFS CG VV+C + HS A++E
Sbjct: 335 SGSPDKARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECTIADSKHS----AYIE 390
Query: 163 FADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
++ A AAL L +G P+ V +K+ LP P
Sbjct: 391 YSKPEEATAALALNNMDVGGRPLNVETAKS--LPQKPIL 427
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 31/190 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG-DHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T +++ D S FV F
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMSKDDGKSRGFGFVAFEDPD 243
Query: 264 VAESAILALN 273
AE A+L LN
Sbjct: 244 AAEQAVLELN 253
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVG 172
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ +P+ R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQR-----DPSL-------RRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
VYV + ++ +E+L F G++ +V + F FV F A AA+ L
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 177 GTMLG----YYPVRVLPSKTAILPVNPTFLPRSEDERE-MCSRTVYCTNIDKKVPQAEVK 231
G +G Y R + F + E + +Y N+D + ++
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ D ++ FV F A A A+ +G V+GS+P+ V+
Sbjct: 305 IAFSPY--GNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVA 360
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N ++ ++K+FFE G++T +++ ++ +A+ AE+A+
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E++ +T+YV ++DQ++TE+ L LF G V C++ + S +AF+E+A+ A+
Sbjct: 3 EEAYPKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSD-PYAFIEYANHQSAQT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL L + + + A P N P+++ + ++ ++ ++ ++
Sbjct: 62 ALAAMNKRL--FLKKEIKVNWATSPGN---QPKTDTSQH---HHIFVGDLSPEIETETLR 113
Query: 232 QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
+ F A GE++ R++ D + S AFV F A AE+AI +N G LGS+ IR
Sbjct: 114 EAF--APFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMN--GQWLGSRSIRT 169
Query: 287 SPS-KTPVRPR 296
+ S + P PR
Sbjct: 170 NWSTRKPPAPR 180
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 120 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 179
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 180 ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 228
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFA 263
+ VY N + + + ++K FE G +T +++ +R +AF +
Sbjct: 229 EKAKLFTNVYVKNFGEDMTEDKLKDMFEKY--GTITSHKVMSKDDGKSRGFGFVAFEDPD 286
Query: 264 VAESAILALNCSGMVLG 280
AE A+L LN + G
Sbjct: 287 AAEQAVLELNGKEIAEG 303
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF 163
++YV D+ +ITE L FSS G V+ RVC D L +A+V F
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 59
>gi|348525751|ref|XP_003450385.1| PREDICTED: ELAV-like protein 2-like [Oreochromis niloticus]
Length = 440
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 115 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 173
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 174 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 216
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLG 280
Q E++Q F G + R+L D V S + F+ F AE AI LNC
Sbjct: 217 TQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGA 274
Query: 281 SQPIRVSPSKTP 292
++PI V + P
Sbjct: 275 TEPITVKFANNP 286
>gi|224112839|ref|XP_002316306.1| predicted protein [Populus trichocarpa]
gi|222865346|gb|EEF02477.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
VYV I TE+ + F CG + VDC D A + F E A+ AL+L
Sbjct: 197 VYVGGIPYYSTEDDIRSFFEGCGTITEVDCMTFPDSGKFRGIAIISFKTEAAAKRALDLD 256
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
G+ +G + +++ P KT + P F P E +R +Y N+ + + ++K+FF +
Sbjct: 257 GSDMGGFYLKIQPYKTTKVNKEPNFAPGI---VEGYNR-IYVGNLSWDITEDDLKKFF-S 311
Query: 237 ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
C R + + V+F+ +S + AL ++ +PI++S
Sbjct: 312 DCKISSIRFGMDKETGEFRGYGHVDFSDNDSLVKALKLDQRIVCGRPIKIS 362
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYG 133
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A ++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIEKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N ++ ++K FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+++ + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRQIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
+A G ++ L + +S FV F E+A ++ +GM+L + + V
Sbjct: 111 -SAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVG 163
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +A+ AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAV 240
Query: 270 LALNCSGM 277
ALN M
Sbjct: 241 QALNGKDM 248
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKGIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+A G ++ + + +S FV F E+A +++ +GM+L + + V
Sbjct: 111 -SAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVG 163
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 28/195 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D +
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG 136
Query: 155 VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F E AR A+ + G +L V V F+PR E +
Sbjct: 137 SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYV-----------GKFIPRKERIALLGD 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAES 267
+ VY N ++ ++++ F+ G++ +++ D + +R FV + E+
Sbjct: 186 KMKRFNNVYIKNFGDELDDDKIRELFDPF--GKIISAKVMTDEIGKSRGFGFVSYEEPEA 243
Query: 268 AILAL-NCSGMVLGS 281
A A+ N +GM LG
Sbjct: 244 AEKAVDNLNGMELGG 258
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ + P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D S FV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKIASDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVG 171
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V F++ A A
Sbjct: 26 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 85
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ ++ N+D+ + +
Sbjct: 86 LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDRAIDHKALH 133
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F + G + ++ D S FV+F ESA A+ +GM+L + + V P
Sbjct: 134 DTF--STFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGP 190
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D ++ +++L LFS G + C+V DP+ + R + FV F+ + +RA L +
Sbjct: 312 LYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMN 371
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 372 GKMVVSKPLYV 382
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D I + L F+ CG+V+ C+V D + + FV+F GA+AAL++ G
Sbjct: 101 VFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RTVYCTNIDKKVPQAEVKQFF 234
+ LG V V P R D M + R +Y NI +A+VK
Sbjct: 161 SKLGDSEVVVAP------------FVRRVDREVMAAKSFRNIYIKNIAAAATEADVKAAA 208
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
E G+V L L T+ A V F E+A+ A+
Sbjct: 209 EKF--GKVNSLFLSEHAPFPTKFALVAFEEHEAAVQAI 244
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 116 RRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF---ADEHG 168
R +VYV D ID EE + LFS+ VV +VC D L + +V F AD
Sbjct: 7 RTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEK 66
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ALN G G +RV+ F R +R+ V+ +D +
Sbjct: 67 VIDALNYTGIAPGLQ-IRVM------------FSIRDPLQRKSGMNNVFVKKLDTAINAK 113
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
E++ F CG ++ L +S FV+F AE A AL+ +G LG + V+P
Sbjct: 114 ELQAAF-TKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNGSKLGDSEVVVAP 172
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-N 174
R +YV + +IT+++L +F G++ C + +P+ + FAFV F D A AAL +
Sbjct: 289 RNLYVKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 175 LGGTML 180
L G L
Sbjct: 349 LNGQPL 354
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V F++ A A
Sbjct: 29 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 88
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ ++ N+D+ + +
Sbjct: 89 LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDRAIDHKALH 136
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F + G + ++ D ++ FV+F ESA A+ +GM+L + + V P
Sbjct: 137 DTF--STFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGP 193
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D +I +E+L LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 315 LYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMN 374
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 375 GKMVVSKPLYV 385
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANMSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +A+ AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAV 240
Query: 270 LALNCSGM 277
ALN M
Sbjct: 241 QALNGKDM 248
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKGIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+A G ++ + + +S FV F E+A ++++ +GM+L + + V
Sbjct: 111 -SAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVG 163
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D I + L F+ CG+V+ C+V D + + FV+F GA+AAL++ G
Sbjct: 101 VFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RTVYCTNIDKKVPQAEVKQFF 234
+ LG V V P R D M + R +Y NI +A+VK
Sbjct: 161 SKLGDSEVVVAP------------FVRRVDREVMAAKSFRNIYIKNIAAAATEADVKAAA 208
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
E G+V L L T+ A V F E+A+ A+
Sbjct: 209 EKF--GKVNSLFLSEHAPFPTKFALVAFEEHEAAVQAI 244
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 116 RRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF---ADEHG 168
R +VYV D ID EE + LFS+ VV +VC D L + +V F AD
Sbjct: 7 RTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEK 66
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ALN G G +RV+ F R +R+ V+ +D +
Sbjct: 67 VIDALNYTGIAPGRQ-IRVM------------FSIRDPLQRKSGMNNVFVKKLDTAINAK 113
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
E++ F CG ++ L +S FV+F AE A AL+ +G LG + V+P
Sbjct: 114 ELQAAF-TKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNGSKLGDSEVVVAP 172
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-N 174
R +YV + +IT++RL +F G++ C + +P+ + FAFV F D A AAL +
Sbjct: 289 RNLYVKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 175 LGGTML 180
L G L
Sbjct: 349 LNGQPL 354
>gi|410929297|ref|XP_003978036.1| PREDICTED: uncharacterized protein LOC101067881 [Takifugu rubripes]
Length = 451
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G V R+ GD RFAFVEF+++
Sbjct: 161 DEIRRTVYVGNLNSQTTTADQLLEFFRQVGSVKFVRMAGDETQPTRFAFVEFSEQESVAR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 221 ALTFNGVMFGDRPLKINHSNNAIV 244
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF G V +R+ GD TR AFVEF+ ES AL
Sbjct: 165 RTVYVGNLNSQTTTADQLLEFFRQV--GSVKFVRMAGDETQPTRFAFVEFSEQESVARAL 222
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P+++
Sbjct: 223 TFNGVMFGDRPLKI 236
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D I + L FS CG+V+ C+V D + + FV+F G +AAL + G
Sbjct: 101 VFVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALEMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RTVYCTNIDKKVPQAEVKQFF 234
+ LG V V P R D M + R +Y NI +A+VK
Sbjct: 161 SKLGDSEVVVAP------------FVRRVDREAMAAKSFRNIYIKNITASATEADVKAIV 208
Query: 235 EAACGGEVTRLRLLGDH----VHSTRIAFVEFAVAESAILALNCS 275
E G+V L L +H +AF E A AI ALN S
Sbjct: 209 EEF--GKVDSL-FLSEHARFPTKFALVAFEEHQAAVQAIAALNES 250
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 116 RRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF---ADEHG 168
R +VYV D ID EE + LFS+ VV +VC D L + +V F AD
Sbjct: 7 RTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEK 66
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ALN G G +RV+ F R +R+ V+ +D +
Sbjct: 67 VIDALNYTGIAPGRQ-IRVM------------FSIRDPLQRKSGMNNVFVKKLDTAINAK 113
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
E++ F + CG ++ L +S FV+F A+ AL +G LG + V+P
Sbjct: 114 ELQAAF-SKCGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALEMNGSKLGDSEVVVAP 172
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +Y+ + +IT++RL +F G++ C + +P+ L+ FAFV F D+ A AAL
Sbjct: 289 RNLYIKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAAL 346
>gi|326427350|gb|EGD72920.1| hypothetical protein PTSG_04652 [Salpingoeca sp. ATCC 50818]
Length = 976
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 20/190 (10%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
++ +RTV+V ++D + E+ L F CG + D R+ P + FA++EF ++
Sbjct: 686 EAAQRTVFVKNLDFAVDEDMLQMFFKDCGAIRDIRLVRKPSGQSKGFAYIEFEEKSSLAF 745
Query: 172 ALNLGGTMLGYYPVRVLP----SKTAILPVNPT-FLPRSEDEREMCSRTVYCTNIDKKVP 226
AL+ + PV V P SKTA+ P + T F P RTV+ +D
Sbjct: 746 ALSKDRQFMNGRPVLVDPCVDRSKTALRPKHQTGFDP----------RTVFVKRLDHSCT 795
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LNCSGMVLGSQPI 284
+ +V+ FE G V +R++ R A+VEF + A A +N + +
Sbjct: 796 EQDVRTLFEQY--GAVKEVRMVTTLAGKPRGFAYVEFEASRDAATAIMNLDKAEFKGRQL 853
Query: 285 RVSPSKTPVR 294
+V+ S P +
Sbjct: 854 QVALSNPPSK 863
>gi|224060343|ref|XP_002300152.1| predicted protein [Populus trichocarpa]
gi|222847410|gb|EEE84957.1| predicted protein [Populus trichocarpa]
Length = 892
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG +A++ED++++T++VS++ +T E+L LFS CG VV+C + HS A++E
Sbjct: 309 SGSPDKARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECAIADSKHS----AYIE 364
Query: 163 FADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++ A AAL L +G P+ V +K+ LP P
Sbjct: 365 YSKPEEATAALALNNMDVGGRPLNVEMAKS--LPQKP 399
>gi|432919034|ref|XP_004079712.1| PREDICTED: ELAV-like protein 2-like [Oryzias latipes]
Length = 389
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LNC ++P
Sbjct: 169 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKG 127
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A ++ ML L +K + F+PR E E+E+
Sbjct: 128 NSKGYGFVHFETEESANTSIEKVNGML-------LNAKKVFVG---RFIPRKEREKELGE 177
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
+ VY N ++ +K+ FE G +T R++ S FV F ESA
Sbjct: 178 KAKLFTNVYVKNFGDELTDESLKEMFEKY--GTITSHRVMIKENKSRGFGFVAFENPESA 235
Query: 269 ILALN-CSGMVLG 280
+A+ +G LG
Sbjct: 236 EVAVQELNGKELG 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 63 MNFDLIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F ESA ++ +GM+L ++ + V
Sbjct: 111 SAF--GNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVG 163
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG 177
VYV + +T+E L +F G + RV + F FV F + A A+ L G
Sbjct: 185 VYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSRGFGFVAFENPESAEVAVQELNG 244
Query: 178 TMLG----YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAE 229
LG Y R + + F + + E +R +Y N+D +
Sbjct: 245 KELGDGKVLYVGRAQKKNERQMELKRRF---EQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+++ F + G +T +++ + S FV F+ AE A A+ +G ++GS+P+ V+
Sbjct: 302 LRKEF--SPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVA 358
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ +++ +L LFS GQVV RVC D S L +A+V +++ ARA
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + + F
Sbjct: 95 LNFAALNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHETF 142
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
+ G + ++ D S FV++ A++AI +LN GM++ +P+ V P
Sbjct: 143 SSF--GTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLN--GMLINDKPVFVGP 196
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ N+T+ L LF+ GQVV RVC D + L + +V ++ A A
Sbjct: 22 VTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARA 81
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ S ++ N+DK + +
Sbjct: 82 LDMLNFTPLNGSPIRIMYSH------------RDPSVRKSGSGNIFIKNLDKGIDHKALH 129
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D S FV+F ESA A+ +GM+L + + V P
Sbjct: 130 DTFSAF--GNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGP 186
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I ++RL LFS G + C+V DP+ + R + FV F+ E ++A + +
Sbjct: 308 LYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMN 367
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 368 GKMVVSKPLYV 378
>gi|414884540|tpg|DAA60554.1| TPA: hypothetical protein ZEAMMB73_865049 [Zea mays]
Length = 401
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
S+DEREMC+RT+Y TNIDKKV QA++K FFE+ CG
Sbjct: 299 SDDEREMCARTIYRTNIDKKVTQADLKLFFESICG 333
>gi|391329197|ref|XP_003739062.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like
[Metaseiulus occidentalis]
Length = 399
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRT+YV ++D N+T E + FS CG++ R+ G+ + ++ AFVEF ++ A
Sbjct: 164 EEIRRTIYVGNLDPNLTNEIVMKFFSQCGEIKYVRMGGETGASMKHAFVEFTEQASVGNA 223
Query: 173 LNLGGTMLG 181
GT+LG
Sbjct: 224 FQFNGTLLG 232
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
S++ E RT+Y N+D + V +FF + CG E+ +R+ G+ S + AFVEF
Sbjct: 159 SDENVEEIRRTIYVGNLDPNLTNEIVMKFF-SQCG-EIKYVRMGGETGASMKHAFVEFTE 216
Query: 265 AESAILALNCSGMVLGSQPIRVSPS 289
S A +G +LGS+ + VS S
Sbjct: 217 QASVGNAFQFNGTLLGSRAMVVSHS 241
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL----RFAFVEFADEHGARAA 172
R + VS+I ++ E+L LF+ G V DCR+ L R +++F + A
Sbjct: 8 RVIQVSNIASGVSREQLLALFNHVGSVEDCRLYPSVEQPLENGTRICYIKFKELWSVGVA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILP 196
++L T+ P+ + P + +P
Sbjct: 68 MHLSNTIFMERPLLIFPMDSDQVP 91
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++EE L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDSSVSEELLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R +K + VN P ++ + + + ++ ++ ++ +
Sbjct: 62 ALAAMNK-------RSFLNKE--MKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
K+ F A GE++ R++ D + S AFV F + AE+AI A+N G LGS+ IR
Sbjct: 113 KEAF--APFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMN--GQWLGSRSIR 168
Query: 286 VSPS 289
+ S
Sbjct: 169 TNWS 172
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D ++ + +L LF+ GQVV RVC D + L + +V + H A A
Sbjct: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S +PT R+ + ++ N+DK + +
Sbjct: 98 LDELNFTPLNGKPIRIMYSYR-----DPTI-------RKSGAGNIFIKNLDKSIDNKALH 145
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F + G + ++ D + +R FV+F ESA A++ +GM+L + + V P
Sbjct: 146 DTF--STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D +I++++L LFS G + C+V DP+ + R + FV F+ E ++A +
Sbjct: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 384 GKMVVSKPLYV 394
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 25/228 (10%)
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQ-REDSVRRT----VYVSDIDQNIT 129
+++ +SAID N ++ G R Q RE + +T VYV ++ + T
Sbjct: 178 EESAKSAIDKLNGM------LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
Query: 130 EERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG---YYP 184
E+ L +F G + V D + F FV F D + AR+ L G +Y
Sbjct: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
Query: 185 VRVLPSKTAILPVNPTF---LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGE 241
+ + + F L + D+ E + +Y N+D + ++K+ F G
Sbjct: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLN--LYVKNLDDSISDDKLKELFSEF--GT 347
Query: 242 VTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+T +++ D +R FV F+ AE A AL +G ++ S+P+ V+
Sbjct: 348 ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D + L + +V +++ A A
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ ++ N+DK + +
Sbjct: 92 LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDKAIDHKALH 139
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F + G + ++ D S FV+F E+A A+ +GM+L + + V P
Sbjct: 140 DTFSSF--GNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGP 196
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D +I +E+L LFSS G + C+V DP+ V R + FV F+ E +RA L +
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMN 377
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 378 GKMVASKPLYV 388
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 19/197 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+++ +T+YV ++DQ++TE+ L LF G V C++ + S +AF+E+A A+
Sbjct: 3 DEAYPKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSD-PYAFIEYASHQSAQT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL L + + + A P N P+++ + ++ ++ ++ ++
Sbjct: 62 ALAAMNKRL--FLKKEIKVNWATSPGN---QPKTDTSQH---HHIFVGDLSPEIETETLR 113
Query: 232 QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
+ F A GE++ R++ D + S AFV F A AE+AI +N G LGS+ IR
Sbjct: 114 EAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQMMN--GQWLGSRSIRT 169
Query: 287 SPS-KTPVRPRVTRPGM 302
+ S + P PR G+
Sbjct: 170 NWSTRKPPAPRENTKGI 186
>gi|432884719|ref|XP_004074556.1| PREDICTED: uncharacterized protein LOC101155617 [Oryzias latipes]
Length = 445
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G V R+ GD RFAFVEF ++
Sbjct: 161 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQDSVAR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P++V S AI+
Sbjct: 221 ALTFNGVMFGDRPLKVNHSNNAIV 244
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 214 RTVYCTNIDKKVPQA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
RTVY N++ + A ++ +FF+ G+V +R+ GD TR AFVEF +S AL
Sbjct: 165 RTVYVGNLNSQTTTADQLLEFFKQV--GDVKFVRMAGDETQPTRFAFVEFVEQDSVARAL 222
Query: 273 NCSGMVLGSQPIRV 286
+G++ G +P++V
Sbjct: 223 TFNGVMFGDRPLKV 236
>gi|393215302|gb|EJD00793.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 589
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHG 168
+EDS +TV+V + N+ + LA F+ CG+VV RV D ++ F FVEFA G
Sbjct: 317 QEDS--KTVFVGRLSWNVDNDWLAQEFADCGEVVSARVQMDRNTGKSRGFGFVEFATAEG 374
Query: 169 ARAALNLGGTM-LGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVP 226
A AA+ L G + V + KT+ P +P ++ D S ++ N+ +
Sbjct: 375 ANAAVALNGQKEIDGRAVNL--DKTSAKPADPERRAKAFGDSTSAPSSVLFVGNVSFDMT 432
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTRI---AFVEFAVAESAILALNCS-GMVLGSQ 282
+ + + F A GEV +RL D + R+ +VEF ESA A + GM +G +
Sbjct: 433 EDGLWEVF--AEYGEVKSVRLPTDR-DTQRLKGYGYVEFVDVESAKKAFEGARGMDVGGR 489
Query: 283 PIRV 286
IR+
Sbjct: 490 TIRL 493
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 99 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESG 158
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E ++E+
Sbjct: 159 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GKFIPRKERQKELG 207
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-LLGDHVHSTRIAFVEFA--- 263
+ VY N + + ++K+ FE G +T + ++ D S FV F
Sbjct: 208 EKAKLFTNVYVKNFGEDMTDDKLKEMFEKY--GTITSHKVMIKDDGKSRGFGFVAFEDPN 265
Query: 264 VAESAILALNCSGMVLG 280
AE A+L LN + G
Sbjct: 266 SAEQAVLDLNGKEIAEG 282
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++EE L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDTSVSEELLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R +K + VN P ++ + + + ++ ++ ++ +
Sbjct: 62 ALAAMNK-------RSFLNKE--MKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
K+ F A GE++ R++ D + S AFV F + AE+AI A+N G LGS+ IR
Sbjct: 113 KEAF--APFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMN--GQWLGSRSIR 168
Query: 286 VSPS 289
+ S
Sbjct: 169 TNWS 172
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V +VYV D++ N++E +L +FS G VV RVC D L +A+V + A A
Sbjct: 22 VSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRA 81
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L L L + PV P + +P+ R+ + ++ N+DK + +
Sbjct: 82 LEL----LNFTPVNGKPIRIMFSHRDPSL-------RKSGAANIFIKNLDKAIDNKALHD 130
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F +A GG ++ S FV+F ESA A+ +GM+L + + V P
Sbjct: 131 TF-SAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGP 186
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGR------AFRAQREDSVRR- 117
F +N ADD + A++ N ++ + GR ++ S R F +R+ + +
Sbjct: 245 FGFVNFELADDAAK-AVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKY 303
Query: 118 ---TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+Y+ ++D + +E+L LF+ G + C+V DP R + FV F+ E RA
Sbjct: 304 QGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAV 363
Query: 173 LNLGGTMLGYYPVRV 187
+ M+G P+ V
Sbjct: 364 TEMNTKMVGSKPLYV 378
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+++ +T+YV ++D ++ E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 DEAYPKTLYVGNLDISVQEDLLCALFSQIGPVKGCKIIREPGND-PYAFVEFTNHQSAST 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL RV K + VN P ++ + + + ++ ++ ++ +
Sbjct: 62 ALIAMNK-------RVFLDKE--MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETDTL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G LGS+ IR
Sbjct: 113 REAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMN--GQWLGSRSIR 168
Query: 286 VSPS-KTPVRPRVTRP 300
+ S + P PR +P
Sbjct: 169 TNWSTRKPPPPRAEKP 184
>gi|303280195|ref|XP_003059390.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459226|gb|EEH56522.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 589
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
A+ V RTVY +++ +ITE+ LA FS G V + G + RF FVEF D+
Sbjct: 288 AEDTSDVARTVYAGNVNSSITEDMLADFFSVAGVVTYVKFAGSDFNPSRFGFVEFTDKAS 347
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAIL 195
A AA L GTML ++V S I+
Sbjct: 348 AEAAKALSGTMLAEMTLKVKHSNNPII 374
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
+RTVY N++ + + + FF A G VT ++ G + +R FVEF SA A
Sbjct: 294 VARTVYAGNVNSSITEDMLADFFSVA--GVVTYVKFAGSDFNPSRFGFVEFTDKASAEAA 351
Query: 272 LNCSGMVLGSQPIRVSPSKTPV 293
SG +L ++V S P+
Sbjct: 352 KALSGTMLAEMTLKVKHSNNPI 373
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ ++++ +L LFS GQVV RVC D S L +A+V F + ARA
Sbjct: 41 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEV 100
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + + F
Sbjct: 101 LNFAPLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKMIDNKSLHETF 148
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV++ A++AI +LN GM++ +P+ V P
Sbjct: 149 SSF--GTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLN--GMLINDKPVFVGP 202
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LFS+ G++ C+V D + + + + FV F+ E ++A +
Sbjct: 324 LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMN 383
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
G M+ P+ V F R ED + M
Sbjct: 384 GKMISGKPLYV------------AFAQRKEDRKAML 407
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 18/185 (9%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE 166
+Q+ ++ ++YV ++D ++E L +FS G V RVC D + L +A+V F D
Sbjct: 32 SQKVETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDY 91
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
R A+ L Y P++ P + +P+ R+ S ++ N+ +
Sbjct: 92 EAGRQAIE----KLNYTPIKGQPCRIMWSQRDPSL-------RKKGSGNIFIKNLHADID 140
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALNC-SGMVLGSQP 283
+ F + G + ++ D V +S FV F E+A A++ +GM+L Q
Sbjct: 141 NKALHDTF--SVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQE 198
Query: 284 IRVSP 288
+ V+P
Sbjct: 199 VYVAP 203
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRF 158
R +QR+ S+R+ +++ ++ +I + L FS G ++ C++ D + F
Sbjct: 112 RIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGF 171
Query: 159 AFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FV F + AR A++ + G +L V V P V+ +E + VY
Sbjct: 172 GFVHFESDEAAREAIDAINGMLLNGQEVYVAPH------VSRKDRQSKLEEAKANFTNVY 225
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALN 273
NI + P+ E ++FF+ VT + L D R FV + A A A+ LN
Sbjct: 226 IKNISLETPEQEFEEFFKKVA--PVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELN 283
>gi|328852755|gb|EGG01898.1| hypothetical protein MELLADRAFT_91734 [Melampsora larici-populina
98AG31]
Length = 1071
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 11/178 (6%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAA 172
+ R T+YV++ ++ T+E + F G++ D R S RF +V+F A++A
Sbjct: 717 AWRSTLYVTNFPEDATDEWIRSKFGEFGKIFDVRWPSKRFKSTRRFCYVQFTSPDSAQSA 776
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L L T V PS+ + ++ ++ + R +Y T + K V +A++++
Sbjct: 777 LALHNT-------EVAPSQKMSVFISDPLRKKARTDVGANDRELYITCLTKFVQEADLRK 829
Query: 233 FFEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
F+ G++ +R+ L + HS AFVEF SA AL+ + + L + I V+ S
Sbjct: 830 LFQPF--GDIKGVRMILNEDGHSKGFAFVEFETEASAKAALSMNNVELKKRRIGVTIS 885
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 25/181 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D S + +
Sbjct: 65 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYG 124
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A A+ + G +L V V F+PRSE E+++ +
Sbjct: 125 FVHFETEEAANNAIQKVNGMLLNGRKVFV-----------GKFVPRSEREKQLGQKARRF 173
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
VY N + ++++ FE G++T +++ D + FV F E+A A+
Sbjct: 174 MNVYIKNFGDDLDDEKLREMFEKY--GKITSAKVMADETGKPKGFGFVSFEDPENAEKAV 231
Query: 273 N 273
N
Sbjct: 232 N 232
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN-LGGTMLGYYP 184
+TE L FSS G V+ RVC D L +A+V F A AL+ + M+ P
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 185 VRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR 244
+R++ S+ +P+ R+ V+ N+DK + + F A G +
Sbjct: 64 IRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSIDNKAMYDTFSAF--GNILS 109
Query: 245 LRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
++ D +++ FV F E+A A+ +GM+L + + V
Sbjct: 110 CKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVG 154
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARA 171
V ++YV D++ ++T+ +L LF+ GQVV RVC D S L + +V +++ + ARA
Sbjct: 23 VTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARA 82
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L T L P+RV+ S +PT R+ + ++ N+DK + +
Sbjct: 83 LEMLNFTPLNGSPIRVMYSHR-----DPTI-------RKSGAGNIFIKNLDKAIDHKALH 130
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D S FV+F E+A A+ +GM+L + + V P
Sbjct: 131 DTFSAF--GNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGP 187
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +E+L LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 309 LYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMN 368
Query: 177 GTMLGYYPVRV 187
G ++ P+ V
Sbjct: 369 GKIVVSKPLYV 379
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D ++ FV + AE+A A+ + +GM+L + + V
Sbjct: 151 --AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 203
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID +V E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 227 IKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 98/190 (51%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++EE L LF + G V +C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEELLIALFGTMGAVKNCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV D+D N+T+ +L FS GQVV RVC D + L + +V F + + ARA
Sbjct: 41 SLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQE 100
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L PVRV+ S R R + ++ N+DK + + F
Sbjct: 101 LNYIPLNGKPVRVMYSH------------RDPSVRRSGAGNIFIKNLDKSIDHKALHDTF 148
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ G + ++ D S FV++ ESA A+ +GM+L + + V P
Sbjct: 149 --SVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGP 202
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N + GR ++ S R + Q E S++
Sbjct: 261 FGFVNFENADDAAK-AVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKF 319
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+YV ++D ++++E+L LF+ G V C+V DP+ + R + FV F+ E +A
Sbjct: 320 QSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAM 379
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 380 SEMSGKMIENKPLYV 394
>gi|405953553|gb|EKC21194.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Crassostrea gigas]
Length = 970
Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q D RRT +VS++D +I E+R+ +F+ CG++ D R+ + +A+VEF DE G
Sbjct: 765 QDPDKSRRTSFVSNLDYSIDEDRIGQIFAKCGEMTDIRLVKTIKGKSKGYAYVEFKDELG 824
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID------ 222
AL L T P+ P F+ + ED + ++ + T ++
Sbjct: 825 VLEALKLDRT-----PIE----------GRPMFVSKCEDRSQKKAQFKFSTAMEKNKLFI 869
Query: 223 KKVP-----QAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LNCS 275
K +P A ++ F E G V +R++ + + +A+VEF + A A +
Sbjct: 870 KNLPFTCSKDALIQIFSEH---GPVKEVRMVTYRSGAPKGLAYVEFEDEQDAAKAVMKTD 926
Query: 276 GMVLGSQPIRVSPSKTPVR 294
G+ +G I V+ S P R
Sbjct: 927 GLKIGDHEIEVAISNPPQR 945
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 20/196 (10%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-AD 165
AQ+ ++YV ++D ++TE L LFSS GQV RVC D + L +A+V + +
Sbjct: 39 AQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 98
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
E G +A L T++ P R++ S+ R R+ V+ N+D +
Sbjct: 99 EDGEKALEELNYTVIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDHAI 146
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ F A G + ++ D H +S FV + AE+A A+ + +GM+L +
Sbjct: 147 DNKALHDTF--AAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKK 204
Query: 284 IRVSPSKTPVRPRVTR 299
+ V P + R+++
Sbjct: 205 VFVG-HHIPKKERMSK 219
>gi|194742700|ref|XP_001953839.1| GF17967 [Drosophila ananassae]
gi|190626876|gb|EDV42400.1| GF17967 [Drosophila ananassae]
Length = 471
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGHVKSCKIIREPGND-PYAFIEYSTYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLDKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAITAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|254564595|ref|XP_002489408.1| Splicing factor that reanneals U4 and U6 snRNPs during spliceosome
recycling [Komagataella pastoris GS115]
gi|238029204|emb|CAY67124.1| Splicing factor that reanneals U4 and U6 snRNPs during spliceosome
recycling [Komagataella pastoris GS115]
gi|328349837|emb|CCA36237.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Komagataella pastoris CBS 7435]
Length = 865
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 126/272 (46%), Gaps = 29/272 (10%)
Query: 37 QKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96
Q L D+F+++ + FPS +TD F I ++Q+A+D + +
Sbjct: 592 QSLEDLFSEVGTVLNTRFPSLRF-NTDRRFCYIQFT----SEQAAMDAVAKFNGKVLKDS 646
Query: 97 QGRK-----RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
QG++ ++S R+QR D R +++ ++D +T+E L LF GQ+ V D
Sbjct: 647 QGKEYHLVAKISNPEKRSQRSDEGRE-LFIRNLDFKLTKEDLVPLFEKYGQIDKIYVPCD 705
Query: 152 PHSVLR--FAFVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAILPVNPTFLPR 204
+ FAF+ F ++ A +AL L L P+ V P K ++L +NP P+
Sbjct: 706 SETKKNNGFAFITFKEKDAAESALELNSVPLLDRPLDVSLAKKKPKKVSVLEMNPA--PK 763
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
+ T+ ++ + V +++ + F A G ++++ L + HS IA+ +
Sbjct: 764 KNSKL----TTIEAFDLPETVNSSQLMKIFSAI--GPISKITLKPES-HSAFIAYEDVNN 816
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPR 296
+ A+L LN G + +++S T +PR
Sbjct: 817 SGRAMLVLN--GKQVDGFTLKLSEKSTQQQPR 846
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D ++ FV + AE+A A+ + +GM+L + + V
Sbjct: 151 --AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 203
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID +V E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 227 IKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ N++E +L +FS GQVV RVC D L +++V + + A A
Sbjct: 22 VSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRA 81
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L T + P+R++ F R R+ + ++ N+DK + +
Sbjct: 82 LELLNFTGVNGKPIRIM------------FSHRDPSIRKSGTANIFIKNLDKSIDNKALH 129
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D S FV+F ESA A+ +GM+L + + V P
Sbjct: 130 DTF--AAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGP 186
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 107 FRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FV 161
F +R++ + + +Y+ ++D + +E++ LF+ G + C+V D + + FV
Sbjct: 292 FEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFV 351
Query: 162 EFAD-EHGARAALNLGGTMLGYYPVRV 187
F+ + RA + G M+G P+ V
Sbjct: 352 AFSSPDEATRAVTEMNGKMVGNKPLYV 378
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 29/198 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 79 LKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 138
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A +++ ML L K + F+PR E E+E+
Sbjct: 139 SSKGYGFVHFETEEAATKSIDKVNGML-------LNGKKVFVG---KFIPRKEREKELGE 188
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAV 264
+ VY N + +K+ FE G +T ++ + +R +AF +
Sbjct: 189 KAKLFTNVYVKNFGEDFTDDMLKEMFEKY--GPITSHTVVVNKDQKSRGFGFVAFEDPEA 246
Query: 265 AESAILALNCSGMVLGSQ 282
AE A+ LN ++ G Q
Sbjct: 247 AERAVEDLNGKEIIEGKQ 264
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++T+ L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ L P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 74 MNFDTLKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 121
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D S++ FV F E+A +++ +GM+L + + V
Sbjct: 122 SAF--GNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVG 174
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D++ ++TE +L FSS G VV RVC D L +A+V F A A++
Sbjct: 33 SLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDV 92
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L ++ P+RVL S+ R R ++ N+DK + + F
Sbjct: 93 LNFQVINGKPIRVLYSQ------------RDPAVRRSGVGNIFIKNLDKAIDNKALLDTF 140
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G +T ++ D +++ FV+F AE+A A+ N +GM L + + V P
Sbjct: 141 --AQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGP 194
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 12/229 (5%)
Query: 79 QSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
Q+AIDN N G RA R+ + ++ VYV ++ +N+++E+L F+
Sbjct: 174 QAAIDNVNGMELNDKQVYVGP--FQRRADRSTQGEAKFNNVYVKNLSENLSDEKLREKFA 231
Query: 139 SCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLGGTM---LGYYPVRVLPSKTA 193
G V C + D + F FV F GA +A+ NL G + R
Sbjct: 232 EHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAER 291
Query: 194 ILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV 252
+ F R E +M +Y N+++ ++++ F G +T R++ D
Sbjct: 292 EAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEF--GTITSCRVMRDAS 349
Query: 253 HSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRPRVTR 299
++R AFV F+ + A A+ +G ++G++P+ V+ ++ P R
Sbjct: 350 GASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEEPHAGR 398
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D ++ FV + AE+A A+ + +GM+L + + V
Sbjct: 151 --AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 203
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID +V E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 227 IKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 19/177 (10%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGARAALN 174
R++YV D++ N+ E +L LFS VV RVC D + L +A+V F++ A A+
Sbjct: 33 RSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAME 92
Query: 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L T L P+R++ F R R V+ N+D K+ + +
Sbjct: 93 VLNFTPLNGKPIRIM------------FSHRDPTTRRSGHANVFIKNLDTKIDNKALYET 140
Query: 234 FEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F A G V ++ D + S F++F E A A+N +GM++ + + V P
Sbjct: 141 F--ASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGP 195
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 18/181 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ + ++E L +FSS G + V D + R F FV F A AA+ L
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLN 273
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDER-----EMCSRTVYCTNIDKKVPQA 228
G +Y R + F E ER +M + +Y N+ + +
Sbjct: 274 GMTFSDKVWYVGRAQRKGEREAELKAKF----EQERNSRYEKMKAANLYLKNLGDTIDEE 329
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
+K+ F G +T +++ D ++ FV F+ E A AL+ +G ++G +P+ V
Sbjct: 330 RLKELFSEF--GSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYV 387
Query: 287 S 287
+
Sbjct: 388 A 388
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDTSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ + I+E L LF G ++ R+C D + L +A+V F + A AL+
Sbjct: 7 SLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALD- 65
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y V+ +P + +P+ R+ ++ N+DK + + F
Sbjct: 66 ---TLNYASVKGIPIRIMWSQRDPSI-------RKSGIGNIFIKNLDKSIDNKALYDTFS 115
Query: 236 AACGGEVTRLRLL---------GDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIR 285
A G + ++ GD+V S FV F E+A A+ +GM+L + +
Sbjct: 116 AF--GNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVF 173
Query: 286 VSP 288
V P
Sbjct: 174 VGP 176
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 26/181 (14%)
Query: 72 NFADD-NKQSAIDNFNNNRRRRNNFNQGR--KRLSGRA-----FRAQREDSVRR----TV 119
NFAD + AID N + GR K+ RA F+ +++ V + +
Sbjct: 240 NFADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNL 299
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGT 178
YV ++D ++ +ERL FS G + +V D F FV F A AL + G
Sbjct: 300 YVKNLDDSVDDERLRQEFSKFGDITSAKVMSDNKQSRGFGFVCFKTPEAANKALTEMSGH 359
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
M+G P+ V ++ P L RS+ E + +R + +PQ + QFF A
Sbjct: 360 MIGSKPLYVNFAQ-------PKELRRSQLEAQYNARKQ-----PQMIPQM-MPQFFIPAQ 406
Query: 239 G 239
G
Sbjct: 407 G 407
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-AD 165
AQ+ ++YV ++D ++TE L LFSS GQV RVC D + L +A+V + +
Sbjct: 40 AQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
E G +A L T++ P R++ S+ +P R+ V+ N+D +
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDHAI 147
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ F A G + ++ D + +++ FV + AE+A A+ + +GM+L +
Sbjct: 148 DNKALHDTF--AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKK 205
Query: 284 IRVSPSKTPVRPRVTR 299
+ V P + R+++
Sbjct: 206 VFVG-HHIPKKERMSK 220
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 128 NSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 176
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAES 267
+ VY N ++ +K+ FE G +T R++ S FV F ES
Sbjct: 177 EKAKLFTNVYVKNFGDELNDETLKEMFEKY--GTITSHRVMIKDGKSRGFGFVAFENPES 234
Query: 268 AILALN-CSGMVLGSQPI 284
A A+ +G LG I
Sbjct: 235 AEHAVQELNGKELGEGKI 252
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 63 MNFDLIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F ESA ++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVG 163
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D++QN+ EE+L LFS QVV RVC D S L + +V F++ A A+
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ F R R+ V+ N+D + + + F
Sbjct: 106 LNFTPLNGKPIRIM------------FSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETF 153
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
AA G ++ + + S FV+F ESA A++ GM L + + V
Sbjct: 154 -AAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVG 206
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D NI + +L LFS G + C+V D V + + FV F+ E +RA +
Sbjct: 330 LYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMN 389
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 390 GKMIGRKPLYV 400
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 57 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 116
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ +P R+ V+ N+D + + F
Sbjct: 117 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDGAIDNKALHDTF 164
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D H +S FV + AE+A A+ + +GM+L + + V P
Sbjct: 165 --AAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVG-HHIP 221
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 222 KKDRMSK 228
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV D+ ++TE L +F++ G V RVC D L +A+V + A AAL N
Sbjct: 28 SLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALEN 87
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + +P R++ S R R+ + ++ N+DK + + K +
Sbjct: 88 LNYIEIKGHPTRIMWSN------------RDPSLRKSGAGNIFVKNLDKSI---DTKSLY 132
Query: 235 EA-ACGGEVTRLRLLGDHVHST-RIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ A G + ++ D ++ R FV + ESA A+ +GM++G + + V+P
Sbjct: 133 DTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAP 189
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-N 174
R +Y+ +++++I + + FS G +++C V D R + FV F E ARAA+
Sbjct: 113 RKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEK 172
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQ 232
+ G + V V+ F+PR + E+E + + +Y N+ ++ + +++
Sbjct: 173 VNGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLGEEFTEQHLRE 221
Query: 233 FFEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILA-LNCSGMVLG 280
FE G +T +L L D S R FV + +SA+ A + G LG
Sbjct: 222 MFEPY--GRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG-DHVHSTRIAFVEFAV---AESAI 269
VY N + ++K+ FE G++T +++ D S FV + AE+A+
Sbjct: 183 TNVYIKNFTDEFDDEKLKENFEPY--GKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D HS FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD 165
+Q+ ++ ++YV ++D +++E L +FS G V RVC D + L +A+V F D
Sbjct: 33 ESQKVETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 92
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ A+ L Y P++ +P + +P+ R+ S ++ N+ +
Sbjct: 93 HEAGKTAIE----KLNYAPIKGVPCRIMWSQRDPSM-------RKKGSGNIFIKNLHPDI 141
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNC-SGMVLGSQP 283
+ F + G + ++ D ++R FV F E+A A++ +GM+L Q
Sbjct: 142 DNKALHDTF--SVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQE 199
Query: 284 IRVS 287
+ V+
Sbjct: 200 VYVA 203
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS+ G +++C V D R + FV F E ARAA+ +
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 168 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 216
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV F +SA+ A + G LG
Sbjct: 217 EPY--GRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLG 262
>gi|296088276|emb|CBI36502.3| unnamed protein product [Vitis vinifera]
Length = 888
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G + + D++++T+ VS++ +T E+L LFS CG VV+C + H FA
Sbjct: 326 KDSAGSPDKVGKADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKH----FA 381
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAIL--PVNPTFLP 203
++E++ A AAL L +G P+ V LP K AIL P+ LP
Sbjct: 382 YIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLP 432
>gi|225466283|ref|XP_002270255.1| PREDICTED: uncharacterized protein LOC100244513 [Vitis vinifera]
Length = 926
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G + + D++++T+ VS++ +T E+L LFS CG VV+C + H FA
Sbjct: 326 KDSAGSPDKVGKADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKH----FA 381
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAIL--PVNPTFLP 203
++E++ A AAL L +G P+ V LP K AIL P+ LP
Sbjct: 382 YIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLP 432
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARA 171
V ++YV D++ N+T+ +L LF+ GQVV RVC D S L + +V +++ + ARA
Sbjct: 23 VTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARA 82
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L T + P+RV+ S R R+ + ++ N+DK + +
Sbjct: 83 LEVLNFTPVNGSPIRVMYSH------------RDPSVRKSGAGNIFIKNLDKAIDHKALH 130
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F + G + ++ D S FV+F E+A A+ +GM+L + + V P
Sbjct: 131 DTF--SVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGP 187
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +E++ LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 309 LYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMN 368
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 369 GKMVASKPLYV 379
>gi|321474916|gb|EFX85880.1| hypothetical protein DAPPUDRAFT_20224 [Daphnia pulex]
Length = 346
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 109 AQREDSVRR-TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
A ++D+ + ++V D+ I L F++ G++ DCRV DP ++ + FV F
Sbjct: 77 APKQDTSKHFHIFVGDLSPEIETHTLRDAFAAFGEISDCRVVRDPQTLKSKGYGFVSFVK 136
Query: 166 EHGARAAL-NLGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDE----REMCSRTVYCT 219
+ A A+ + G LG +R ++ P + P S +E + TVYC
Sbjct: 137 KSDAENAIAGMNGQWLGTRAIRTNWATRKPPAPKDAGSKPMSYEEVFGQSSSTNCTVYCG 196
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMV 278
N+ + + +++ F G++ +R+ D + AF+ FA ESA A+ +
Sbjct: 197 NLAQGSTEEALQKIFGPY--GQIQEIRVFKDKGY----AFIRFASKESATQAIVSVHNTD 250
Query: 279 LGSQPIRVSPSKTPVRP 295
L Q ++ S K P P
Sbjct: 251 LNGQNVKCSWGKEPGEP 267
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG---ARAALNLG 176
YV ++D ++TEE + LF G V C++ +P + FVEFA+ H A AA+N
Sbjct: 1 YVGNLDPSVTEELIMVLFGQIGTVKGCKIIHEPGHE-PYCFVEFAEHHSAAAALAAMNKR 59
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
M R + A P N P+ + + ++ ++ ++ ++ F A
Sbjct: 60 NCM-----GREMKVNWATSPGN---APKQDTSKHF---HIFVGDLSPEIETHTLRDAFAA 108
Query: 237 ACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVS-PSK 290
GE++ R++ D + S FV F + AE+AI +N G LG++ IR + ++
Sbjct: 109 F--GEISDCRVVRDPQTLKSKGYGFVSFVKKSDAENAIAGMN--GQWLGTRAIRTNWATR 164
Query: 291 TPVRPR 296
P P+
Sbjct: 165 KPPAPK 170
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 40/225 (17%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------C 140
N R F+ G KR +DS T++V D+ ++++ L +F +
Sbjct: 146 NFRLNWATFSSGEKR---------HDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKG 196
Query: 141 GQVVDCRVCGDPHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPV-- 197
+VV R G + FV FADE RA + G + P+R+ P+ L
Sbjct: 197 AKVVIDRTTGRTKG---YGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQT 253
Query: 198 ------NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH 251
NP +++E + + T++ N+D V +KQ F GE+ +++
Sbjct: 254 SKASYQNPQ--GGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQY--GELVHVKI---- 305
Query: 252 VHSTRIAFVEFA---VAESAILALNCSGMVLGSQPIRVSPSKTPV 293
R FV+FA AE A+ LN G +LG Q +R+S ++P
Sbjct: 306 PSGKRCGFVQFADRSSAEEALRVLN--GTLLGGQNVRLSWGRSPA 348
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 40/225 (17%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------C 140
N R F+ G KR +DS T++V D+ ++++ L +F +
Sbjct: 146 NFRLNWATFSSGEKR---------HDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKG 196
Query: 141 GQVVDCRVCGDPHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPV-- 197
+VV R G + FV FADE RA + G + P+R+ P+ L
Sbjct: 197 AKVVIDRTTGRTKG---YGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQT 253
Query: 198 ------NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH 251
NP +++E + + T++ N+D V +KQ F GE+ +++
Sbjct: 254 SKASYQNPQ--GGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQY--GELVHVKI---- 305
Query: 252 VHSTRIAFVEFA---VAESAILALNCSGMVLGSQPIRVSPSKTPV 293
R FV+FA AE A+ LN G +LG Q +R+S ++P
Sbjct: 306 PSGKRCGFVQFADRSSAEEALRVLN--GTLLGGQNVRLSWGRSPA 348
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V + + + ARA
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S +PT R + ++ N+DK + + F
Sbjct: 88 LNFTPLHGKPIRIMYSNR-----DPTI-------RRSGNGNIFIKNLDKAIDHKALHDTF 135
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G + ++ D S FV++ E+A A+ +GM+L + + V P
Sbjct: 136 SAF--GNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGP 189
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I++E+L LFS G + C+V DP V + + FV F++ E +RA +
Sbjct: 311 LYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMN 370
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 371 GKMVVSKPLYV 381
>gi|358332953|dbj|GAA51534.1| squamous cell carcinoma antigen recognized by T-cells 3 [Clonorchis
sinensis]
Length = 898
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
RTV+VS++D + TE+ L F CG++ R+ D + +A+VEF A AL
Sbjct: 626 RTVFVSNLDYSTTEDDLRRTFEECGKLSSVRLVRDYAGRSKGYAYVEFEQASAADVALKK 685
Query: 176 GGTMLGYYPV-RVLPSKTAILPV-NPTFLPRSEDEREMCS-----------RTVYCTNID 222
+G PS + + P F+ R + R S ++ N+D
Sbjct: 686 DRQPIGPSAASEATPSTDDTMTIARPMFVSRCDPNRSKSSGFQYSAGKLEPEKLFVRNLD 745
Query: 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNCS-GMVLG 280
K+V ++Q F G V +R+ + + A+VEFA A+ A AL + G+++G
Sbjct: 746 KRVTAHALEQLF--GEHGTVVSVRIATYRNGAPKGHAYVEFANADQASRALVATDGLLVG 803
Query: 281 SQPIRVSPSKTPVR 294
S+ I V+ S PVR
Sbjct: 804 SKNIAVAISNPPVR 817
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
+Y+ ++ + TEE L F + G V + DP + R FAFV F D A RA L
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELN 250
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV--YCTNIDKKVPQAEVKQFF 234
G LG V V + +FL + +ER + + Y N+D V E+ + F
Sbjct: 251 GRKLGDKEVYV--GRAQKKSERESFLRKLREERAQKYQGINLYIKNLDDTVNDEELHKLF 308
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G++T +++ D ++R FV + E A A++ +G ++ ++PI V+
Sbjct: 309 SALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVA 363
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D++ +TE L +F + G V RVC D + L +A+V F + A AL+
Sbjct: 11 SLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S R R+ ++ N+DK + + F
Sbjct: 71 LNYTLIKGRPCRIMWSH------------RDPSIRKSGQGNIFIKNLDKSIDNKALYDTF 118
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + +++ D +++ FV + +E+A A+ +G +L + + V
Sbjct: 119 SAF--GNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVG 171
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D++ N+ EE+L LFS Q+ RVC D S L +A+V FA+ A A+
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ F R R+ V+ N+D + + F
Sbjct: 96 LNFTPLNGKPIRIM------------FSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVS 287
AA G ++ L S FV+F A++AI LN GM++ + + V
Sbjct: 144 -AAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLN--GMLINDKQVYVG 196
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 105 RAFRAQREDSVRRT-VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVE 162
R R Q S + T VYV ++ + T+E L LF G + V D + R F FV
Sbjct: 201 RQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVN 260
Query: 163 FADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR------- 214
F + A AA+ L GT + RVL A +++ E+E SR
Sbjct: 261 FQNPDSAAAAVERLNGTTINN--DRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGA 318
Query: 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN 273
+Y N+D ++K F G +T +++ D + S FV F+ E A ALN
Sbjct: 319 NLYLKNLDDSFSDEKLKDLFSEF--GTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALN 376
Query: 274 -CSGMVLGSQPIRVS 287
+G ++G +P+ V+
Sbjct: 377 EMNGKLIGRKPLYVA 391
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D++ N+ EE+L LFS Q+ RVC D S L +A+V FA+ A A+
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ F R R+ V+ N+D + + F
Sbjct: 96 LNFTPLNGKPIRIM------------FSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVS 287
AA G ++ L S FV+F A++AI LN GM++ + + V
Sbjct: 144 -AAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLN--GMLINDKQVYVG 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 105 RAFRAQREDSVRRT-VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVE 162
R R Q S + T VYV ++ + T+E L LF G + V D + R F FV
Sbjct: 201 RQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVN 260
Query: 163 FADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR------- 214
F + A AA+ L GT + RVL A +++ E+E SR
Sbjct: 261 FQNPDSAAAAVERLNGTTINN--DRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGA 318
Query: 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN 273
+Y N+D ++K F G +T +++ D + S FV F+ E A ALN
Sbjct: 319 NLYLKNLDDSFSDEKLKDLFSEF--GTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALN 376
Query: 274 -CSGMVLGSQPIRVS 287
+G ++G +P+ V+
Sbjct: 377 EMNGKLIGRKPLYVA 391
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQSAAT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R K + VN P ++ + + + ++ ++ ++ +
Sbjct: 62 ALAAMNK-------RSFLDKE--MKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
K+ F A GE++ R++ D + S AFV F + AE+AI A+N G LGS+ IR
Sbjct: 113 KEAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMN--GQWLGSRSIR 168
Query: 286 VSPS 289
+ S
Sbjct: 169 TNWS 172
>gi|940288|gb|AAA74208.1| protein localized in the nucleoli of pea nuclei; ORF; putative
[Pisum sativum]
Length = 611
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+ +T++V ++ ++ + F CG+VVD R+ D + F VEFA A+
Sbjct: 350 ENGGSKTLFVGNLSFSVQRSDIESFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQ 409
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS---EDEREMCSRTVYCTNIDKKVPQ 227
+AL L G L VR+ + F P S ++ S+TV+ DK + +
Sbjct: 410 SALELNGQELLQRGVRL-----DLARERGAFTPNSTGNQNSGRGQSQTVFVRGFDKSLGE 464
Query: 228 AEVKQFFE---AACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQ 282
E++ E A+C G+ +R+ + D+ +S A+++F ++S A+ G L
Sbjct: 465 DEIRAKLEQHFASC-GQASRVSIPKDYDTGYSKGFAYMDFKDSDSFNKAIELHGSELDGY 523
Query: 283 PIRVSPSK 290
P+ + +K
Sbjct: 524 PLSIDEAK 531
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADE 166
AQ+ + ++YV D++ ++TE +L FSS G VV RVC D L +A+V F
Sbjct: 29 AQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSP 88
Query: 167 HGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ A A++ L ++ P+RVL S+ R R ++ N+DK +
Sbjct: 89 NDAAHAIDVLNFQVINGKPIRVLYSQ------------RDPAVRRSGVGNIFIKNLDKAI 136
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ F A G +T ++ D +S FV+F E+A A+ N +GM L +
Sbjct: 137 DNKALLDTF--AQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQ 194
Query: 284 IRVSP 288
+ V P
Sbjct: 195 VYVGP 199
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 79 QSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
Q+AIDN N G RA R+ ++ VYV ++ +N+++E+L F+
Sbjct: 179 QAAIDNVNGMELNDKQVYVGP--FQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFA 236
Query: 139 SCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL-- 195
G V C + D + F FV + + GA AA+ + GY KT ++
Sbjct: 237 EHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVE---KLDGY----TEDEKTWVVCR 289
Query: 196 ---------PVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL 245
+ F R E +M +Y N++ ++++ F+ G +T
Sbjct: 290 AQKKAEREAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEF--GTITSC 347
Query: 246 RLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
R++ D +R AFV F+ + A A+ +G ++G++P+ V+
Sbjct: 348 RVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVA 391
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 109 LNYTVIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDHAIDNKALHDTF 156
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D + +++ FV + AE+A A+ + +GM+L + + V P
Sbjct: 157 --AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVG-HHIP 213
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 214 KKERMSK 220
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A A+ ++ G +L V V +P K + +E +
Sbjct: 180 FVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---------EEMKANFTN 230
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILA 271
+Y NID V E ++ FE G++T + D +R + +++ A +A+ A
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKH--GDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDA 288
Query: 272 LN 273
LN
Sbjct: 289 LN 290
>gi|170057956|ref|XP_001864710.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
gi|167877220|gb|EDS40603.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
Length = 661
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 11/201 (5%)
Query: 99 RKRLSGRAFRAQREDSVRRT--VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+++L+ + + QR+ ++ VYV I + E+ + F G + + DP +
Sbjct: 153 QQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQK 212
Query: 157 R--FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
FAFVE+ GA+ AL + G MLG ++V + + +P + ++E + +
Sbjct: 213 HKGFAFVEYEIPEGAQLALEQMNGAMLGGRNIKV--GRPSNMPQAQQVIDEIQEEAKNYN 270
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
R +Y +I + + ++K FE A G T G HS + AF+E+ +SAI A+
Sbjct: 271 R-IYIASIHPDLTEEDIKSVFE-AFGAIATCKMSQGSSAHSHKGYAFIEYQTNQSAIEAI 328
Query: 273 NCSGMV-LGSQPIRVSPSKTP 292
+ LG Q +RV S TP
Sbjct: 329 ASMNLFDLGGQLLRVGRSITP 349
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRA----QREDSVRRTVYVSDIDQNITEE 131
+ Q A++ N N GR +A + Q E +Y++ I ++TEE
Sbjct: 225 EGAQLALEQMNGAMLGGRNIKVGRPSNMPQAQQVIDEIQEEAKNYNRIYIASIHPDLTEE 284
Query: 132 RLAGLFSSCGQVVDCRVC--GDPHSVLRFAFVEFADEHGARAAL------NLGGTML 180
+ +F + G + C++ HS +AF+E+ A A+ +LGG +L
Sbjct: 285 DIKSVFEAFGAIATCKMSQGSSAHSHKGYAFIEYQTNQSAIEAIASMNLFDLGGQLL 341
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAF 160
S + +A D ++YV ++D +++E L LFS G V RVC D + L +A+
Sbjct: 33 SSESQQAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAY 92
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTN 220
V F+D + A+ L Y P++ + +P+ R+ ++ N
Sbjct: 93 VNFSDHEAGKQAIE----KLNYTPIKGKLCRIMWSQRDPSL-------RKKGHGNIFIKN 141
Query: 221 IDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCS 275
+++ + + K F+ + G + ++ D ++ + F E + A AI ALN
Sbjct: 142 LNQDI---DNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALN-- 196
Query: 276 GMVLGSQPIRVSPSKT 291
GM+L Q I V+P T
Sbjct: 197 GMLLNGQEIYVAPHLT 212
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 24/154 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +++ +++Q+I + L FS G ++ ++ D + F
Sbjct: 119 RIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFG 178
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE-----DEREMCS 213
FV F +E A A++ L G +L + V P L R E +E +
Sbjct: 179 FVHFEEESAANEAIDALNGMLLNGQEIYVAPH-----------LTRKERDSQLEETKAHF 227
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL 247
VY NID + E K+FF G VT + L
Sbjct: 228 TNVYVKNIDLETTDEEFKEFFGKI--GTVTSVAL 259
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V + + + ARA
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S +PT R + ++ N+DK + + F
Sbjct: 88 LNFTPLHGKPIRIMYSNR-----DPTI-------RRSGNGNIFIKNLDKAIDHKALHDTF 135
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G + ++ D S FV++ E+A A+ +GM+L + + V P
Sbjct: 136 SAF--GNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGP 189
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I++++L LFS G + C+V DP V + + FV F+ E +RA +
Sbjct: 311 LYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMN 370
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 371 GKMVVSKPLYV 381
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ +++ + +L +FS G VV RVC D +S L +A+V + ++ A AL L
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ P+ + R R+ + ++ N+DK + K ++
Sbjct: 96 ----LNFTPING-------KPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDN---KALYD 141
Query: 236 AACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
C G + ++ D +R FV+F ESA A++ +GM++ + + V P
Sbjct: 142 TFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGP 197
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 109 LNYTVIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDHAIDNKALHDTF 156
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D + +++ FV + AE+A A+ + +GM+L + + V P
Sbjct: 157 --AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVG-HHIP 213
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 214 KKERMSK 220
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 109 LNYTVIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDHAIDNKALHDTF 156
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D + +++ FV + AE+A A+ + +GM+L + + V P
Sbjct: 157 --AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVG-HHIP 213
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 214 KKERMSK 220
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
A L + + + A P N L S ++ ++ ++ +K
Sbjct: 62 A--LAAMNKRSFLDKEMKVNWATSPGNQPKLDTSNHHH------IFVGDLSPEIETQTLK 113
Query: 232 QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
+ F A GE++ R++ D + S AFV F + AE+AI A+N G LGS+ IR
Sbjct: 114 EAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMN--GQWLGSRSIRT 169
Query: 287 SPS 289
+ S
Sbjct: 170 NWS 172
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D ++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 75 EESNPRTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 133
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
A L + + + A P N L S ++ ++ ++ +K
Sbjct: 134 A--LAAMNKRSFLEKEMKVNWATSPGNQPKLDTSNHHH------IFVGDLSPEIETQTLK 185
Query: 232 QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
+ F A GE++ R++ D + S AFV F + AE+AI A+N G LGS+ IR
Sbjct: 186 EAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMN--GQWLGSRSIRT 241
Query: 287 SPS 289
+ S
Sbjct: 242 NWS 244
>gi|327264130|ref|XP_003216869.1| PREDICTED: ELAV-like protein 3-like [Anolis carolinensis]
Length = 386
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 61 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDSNDAD 120
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 121 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 166
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH---STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
++Q F G + R+L D V S + F+ F AE AI LN + S+P
Sbjct: 167 MEQLFSQY--GRIITSRILVDQVTAGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEP 224
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 225 ITVKFANNP 233
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ ++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
L +A+V F D R A++ L Y P++ + +P+ R+ S
Sbjct: 78 SLGYAYVNFNDHEAGRKAID----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 215 TVYCTNIDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
++ N+ P + K ++ + G++ ++ D ++ + F E A+ AI
Sbjct: 127 NIFIKNLH---PDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 270 LALNCSGMVLGSQPIRVSP 288
ALN GM+L Q I V+P
Sbjct: 184 DALN--GMLLNGQEIYVAP 200
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 109 LNYTVIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDHAIDNKALHDTF 156
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D + +++ FV + AE+A A+ + +GM+L + + V P
Sbjct: 157 --AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVG-HHIP 213
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 214 KKERMSK 220
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A A+ ++ G +L V V +P K + +E +
Sbjct: 180 FVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---------EEMKANFTN 230
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILA 271
+Y NID V E ++ FE G++T + D +R + +++ A +A+ A
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKH--GDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDA 288
Query: 272 LN 273
LN
Sbjct: 289 LN 290
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D ++EE L LF G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDGTVSEELLVALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL RV K + VN P + + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RVFLDKE--IKVNWATSPGNTPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 32 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A A+N L G L ++V ++ P S R+ +Y + + K +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTM 136
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLG 280
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 137 TQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 281 SQPIRVSPSKTP 292
++PI V + P
Sbjct: 195 TEPITVKFANNP 206
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGAR 170
++V ++YV ++D +++E L +FS G V RVC D + L +A+V F D +
Sbjct: 39 ENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 98
Query: 171 AAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+ L T + P R++ S+ R R+ S ++ N+ P +
Sbjct: 99 TAIEKLNYTAIKGRPCRIMWSQ------------RDPSMRKKGSGNIFIKNLH---PDID 143
Query: 230 VKQFFEA-ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNC-SGMVLGSQPIRV 286
K +E + G + ++ D ++ FV F E+A A++ +GM+L Q + V
Sbjct: 144 NKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYV 203
Query: 287 SP 288
+P
Sbjct: 204 AP 205
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFV 161
R++ +DS T++V D+ ++T+ L F + +VV R+ G + FV
Sbjct: 151 RSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKG---YGFV 207
Query: 162 EFADE-HGARAALNLGGTMLGYYPVRVLPS--KTAILPVNPTF-----LPR-SEDEREMC 212
F+DE RA + G + P+R+ P+ KT P P+ S++E +
Sbjct: 208 RFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPN 267
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAI 269
+ T++ N+D V ++Q F GE+ +++ R FV+FA AE A+
Sbjct: 268 NTTIFVGNLDPNVTDDHLRQVFSQY--GELVHVKIPA----GKRCGFVQFADRSCAEEAL 321
Query: 270 LALNCSGMVLGSQPIRVSPSKTP 292
LN G +LG Q +R+S ++P
Sbjct: 322 RVLN--GTLLGGQNVRLSWGRSP 342
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF + G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLDKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF + G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLDKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|410907065|ref|XP_003967012.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 2-like, partial
[Takifugu rubripes]
Length = 321
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L 175
+ V+ + QN+ +E L LF S G++ C++ D + L + FV + D A A+N L
Sbjct: 2 LIVNYLPQNMXQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 61
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
G L ++V ++ P S R+ +Y + + K + Q E++Q F
Sbjct: 62 NGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKELEQLFS 107
Query: 236 AACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSPSK 290
G + R+L D V S + F+ F AE AI LNC ++PI V +
Sbjct: 108 QY--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEPITVKFAN 165
Query: 291 TP 292
P
Sbjct: 166 NP 167
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 169 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 217
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV F +SA+ A + G LG
Sbjct: 218 EPY--GRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLG 263
>gi|395512536|ref|XP_003775304.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Sarcophilus
harrisii]
Length = 287
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 37 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 96
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 97 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMS 139
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN + S
Sbjct: 140 QKEMEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAS 197
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 198 EPITVKFANNP 208
>gi|157105905|ref|XP_001649078.1| fuse-binding protein-interacting repressor siahbp1 [Aedes aegypti]
gi|108879987|gb|EAT44212.1| AAEL004415-PA [Aedes aegypti]
Length = 672
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 11/201 (5%)
Query: 99 RKRLSGRAFRAQREDSVRRT--VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+++L+ + + QR+ ++ VYV I + E+ + F G + + DP +
Sbjct: 166 QQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQK 225
Query: 157 R--FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
FAFVE+ GA+ AL + G MLG ++V + + +P + ++E + +
Sbjct: 226 HKGFAFVEYEIPEGAQLALEQMNGAMLGGRNIKV--GRPSNMPQAQQVIDEIQEEAKNYN 283
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
R +Y +I + + ++K FE A G VT G H+ + AF+E+ +SAI A+
Sbjct: 284 R-IYIASIHPDLTEEDIKSVFE-AFGPIVTCKMSQGSAAHTHKGYAFIEYQTNQSAIEAI 341
Query: 273 NCSGMV-LGSQPIRVSPSKTP 292
+ LG Q +RV S TP
Sbjct: 342 ASMNLFDLGGQLLRVGRSITP 362
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVD 145
N R F+ G KR +DS T++V D+ ++++ L +F + V
Sbjct: 144 NFRLNWATFSSGEKR---------HDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKG 194
Query: 146 CRVCGDPHS--VLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPV----- 197
+V D ++ + FV FADE RA + G + P+R+ P+ L
Sbjct: 195 AKVVIDRNTGRSKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKA 254
Query: 198 ---NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHS 254
NP +++E + + T++ N+D V +KQ F GE+ +++
Sbjct: 255 SYQNPQ--GGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQY--GELVHVKI----PSG 306
Query: 255 TRIAFVEFA---VAESAILALNCSGMVLGSQPIRVSPSKTPV 293
R FV+FA AE A+ LN G +LG Q +R+S ++P
Sbjct: 307 KRCGFVQFADRSSAEEALRVLN--GTLLGGQNVRLSWGRSPA 346
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 31/197 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D
Sbjct: 77 LKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L RV K F+PR E E+E+
Sbjct: 137 TSKGYGFVHFETEEAANKSIDKVNGMLLNGK--RVFVGK---------FIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG-DHVHSTRIAFVEF---A 263
+ VY N + +++ FE G +T +++ D S FV F
Sbjct: 186 EKAKRFTNVYVKNFGEDFSDDLLREMFEKY--GRITSHKVMSKDDGKSKGFGFVAFEDPE 243
Query: 264 VAESAILALNCSGMVLG 280
AE A+ +LN +V G
Sbjct: 244 AAEKAVASLNGKEIVEG 260
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+ Y P++ P + +P+ R+ V+ N+DK + + F
Sbjct: 71 ---TMNYDPLKGKPIRIMWSQRDPSL-------RKSGVGNVFIKNLDKSIDNKAMYDTF- 119
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVL 279
+ G + ++ D +++ FV F E+A +++ +GM+L
Sbjct: 120 -STFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLL 164
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 97 QGRKRLSGRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSS 139
+G+ GRA +A+R+ ++R +YV +ID NI +ERL F+
Sbjct: 259 EGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTP 318
Query: 140 CGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + +V + F FV F+ E +A + G ++G P+ V
Sbjct: 319 FGTITSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYV 367
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D + L +A+V F + E G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+M + V+ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G++ ++ D + + + FV F ESA A+ + +GM+L + + V
Sbjct: 189 SAF--GKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 89/175 (50%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+DQ++T+ +L LF+ GQVV RVC D + L + +V ++++ A A+++
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV 100
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ + ++ +PT +R+ + ++ N+DK + ++K E
Sbjct: 101 ----LNFTPLNNKTIRVSVSRRDPT-------DRKSGAGNIFIKNLDKSI---DIKALHE 146
Query: 236 A-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+ G + ++ D S FV++ E+A A++ +GM++ + + V
Sbjct: 147 TFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVG 201
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D I +E+L LFS G + C+V DP + R + FV F+ E +RA +
Sbjct: 324 LYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMN 383
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 384 GKMIVSKPLYV 394
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL- 173
++++V + N+ +E L F+ G+VV RV D + F +VEFAD A+ A+
Sbjct: 272 KSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEFADAASAKKAVE 331
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-EDEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ G + PV L T P NP ++ D R S T++ N+ Q V +
Sbjct: 332 TMNGREIDGRPVN-LDLATPRGPPNPERRAKAFGDSRSEPSATLFVGNLAFSATQDAVYE 390
Query: 233 FFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSG 276
F A GEV +RL D +VEFA E+A ALN G
Sbjct: 391 LFGAV--GEVVNVRLPTDRDSGQPKGFGYVEFADVETASKALNELG 434
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 32 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A A+N L G L ++V ++ P S R+ +Y + + K +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTM 136
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLG 280
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 137 TQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 281 SQPIRVSPSKTP 292
++PI V + P
Sbjct: 195 TEPITVKFANNP 206
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
L +A+V F D R A+ L Y P++ + +P+ R+ S
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 215 TVYCTNIDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
++ N+ P + K ++ + G++ ++ D ++ + F E A+ AI
Sbjct: 127 NIFIKNLH---PDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 270 LALNCSGMVLGSQPIRVSP 288
ALN GM+L Q I V+P
Sbjct: 184 DALN--GMLLNGQEIYVAP 200
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D + L +A+V F + E G +A
Sbjct: 67 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 126
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+M + V+ N+D + + F
Sbjct: 127 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 174
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G++ ++ D + + + FV F ESA A+ + +GM+L + + V
Sbjct: 175 SAF--GKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 226
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D++I + + FS+ G ++ CRV D + + +
Sbjct: 16 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYG 75
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
FV F E A A++ ML L K + F+PR E ER + +
Sbjct: 76 FVHFETEEAANNAISKVNGML-------LNGKKVFV---GRFIPRKERERLLGDKARRFT 125
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAIL 270
VY N ++ ++ F+ G+VT +++ D R FV F AE A+
Sbjct: 126 NVYIKNFGDELDDEKLVVIFDKY--GKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVE 183
Query: 271 ALNCSGMVLGSQPIRVS 287
LN G +G +P+ V
Sbjct: 184 ELN--GKDVGGKPLYVG 198
>gi|301095902|ref|XP_002897050.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108479|gb|EEY66531.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 286
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEHGARAA 172
TVYV I +E + FSSCG V + R+ G P +A V F DE A
Sbjct: 63 TVYVEGIPYKASEGDIVTHFSSCGTVREVRMPRYQDSGKPRG---YAHVVFDDEAALEKA 119
Query: 173 LNLGGTML--GYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L L G L Y +R + A+ + + ++ + C RTVY + +V +
Sbjct: 120 LELDGQYLFNRYLSIRRAEAPRAVEMALKEKTQNATKKAVKGC-RTVYIKQLPYEVEEDT 178
Query: 230 VKQFFEAACGGEVTRLRL-LGDHVHSTR-IAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
++Q A+CG +T +RL + +H + +VEF+ + A+ A SGM +G + + +S
Sbjct: 179 IRQAL-ASCGT-ITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSGMKIGDRMVLIS 236
>gi|242020567|ref|XP_002430724.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212515914|gb|EEB17986.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 470
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRTV ++++D++I + + LFS G+V R C P +A VEF D+ AA
Sbjct: 149 DEIRRTVVITNLDRSIGSQNVIELFSKAGEVKYVRFCFRPGDTANYALVEFTDQTSIIAA 208
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNP 199
L + G L ++V S AI+ P
Sbjct: 209 LKMNGMQLAGNTIKVYHSIQAIVKPQP 235
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAIL-----PVNPTFLPRSEDEREM--CSRTVYCTN 220
G + A + + G+ P +VL + L P+ P LP + D + RTV TN
Sbjct: 101 GPKLAPGVTNQLEGFPPNQVLVTHDPRLIEHNLPLYPP-LPSNTDSNTLDEIRRTVVITN 159
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLG 280
+D+ + V + F A GEV +R + A VEF S I AL +GM L
Sbjct: 160 LDRSIGSQNVIELFSKA--GEVKYVRFCFRPGDTANYALVEFTDQTSIIAALKMNGMQLA 217
Query: 281 SQPIRV 286
I+V
Sbjct: 218 GNTIKV 223
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 99/195 (50%), Gaps = 21/195 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 DESHPKTLYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREPGND-PYAFVEFTNHQSAST 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ +++ + ++ ++ ++ +
Sbjct: 62 ALAAMNK-------RLFLDKE--MKVNWATSPGNQPKQDTSNHHHIFVGDLSPEIETETL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G LGS+ IR
Sbjct: 113 REAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMN--GQWLGSRSIR 168
Query: 286 VSPS-KTPVRPRVTR 299
+ S + P P+ +
Sbjct: 169 TNWSTRKPPPPKTEK 183
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
+ +++ S ++V D+ I E L F+ G++ +CR+ DP ++ +AFV F
Sbjct: 87 QPKQDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
Query: 166 EHGARAALN-LGGTMLGYYPVRV-------LPSKT---AILPVNPTFLPRSEDEREMCSR 214
+ A A+ + G LG +R P KT A PTF ++ +
Sbjct: 147 KAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPKTEKAAQRAKQPTF-DEVYNQSSPTNC 205
Query: 215 TVYC----TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
TVYC T + + + Q QF G + +R+ D + AF++FA ESA
Sbjct: 206 TVYCGGFTTGLTEDLMQKTFSQF------GVIQDIRVFKDKGY----AFIKFATKESATH 255
Query: 271 AL 272
A+
Sbjct: 256 AI 257
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D NIT+ +L LF GQV+ RVC D + L + +V +++ A AL+
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S R R+ + ++ N+DK + + F
Sbjct: 79 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTANIFIKNLDKSIDNKALHDTF 126
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D S FV+F ESA A++ +GM++ + + V
Sbjct: 127 SAF--GNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVG 179
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I +++L LFS G + C+V DP + R + FV F+ E +RA +
Sbjct: 302 LYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMN 361
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 362 GKMVVSKPLYV 372
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ +++E L +FS G V RVC D + L +A+V F D R A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P+ R+ S ++ N+ P + K ++
Sbjct: 98 ---QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSGNIFIKNLH---PDIDNKALYD 144
Query: 236 A-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ G++ ++ D ++ + F E A+ AI ALN GM+L Q I V+P
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN--GMLLNGQEIYVAP 200
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFVE 162
++++D T++V D+ ++T+ L F + +VV R+ G + FV
Sbjct: 144 SRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKG---YGFVR 200
Query: 163 FADE-HGARAALNLGGTMLGYYPVRVLPSK------TAILPVNPTFLPRSEDEREMCSRT 215
FADE RA + G + P+R+ P+ T + + P + E + + T
Sbjct: 201 FADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQAKASYSNTPGGQSENDPNNTT 260
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILAL 272
++ N+D V ++Q F GE+ +++ R FV+F + AE AI L
Sbjct: 261 IFVGNLDPNVTDDHLRQVFSQY--GELVHVKI----PSGKRCGFVQFSDRSSAEEAIRVL 314
Query: 273 NCSGMVLGSQPIRVSPSKTP 292
N G +LG Q +R+S +TP
Sbjct: 315 N--GTLLGGQNVRLSWGRTP 332
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ ++ ++ L FSS G + V D + + R F FV F AR A+ NL
Sbjct: 266 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLN 325
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
G +G Y R + F +++ ++ + +Y N+D + +++
Sbjct: 326 GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRK 385
Query: 233 FFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAE---SAILALNCSGMVLGSQPIRVS 287
FE C GEV +++ D H S FV FA E +AIL +N G ++G +P+ V+
Sbjct: 386 LFE--CFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMN--GKMVGKKPLYVA 440
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVEFAD-EHGARAAL 173
++YV D++ ++ E++L LFS V VC D L + +V F E RA
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
NL T++ P+RV+ S +PT R+ V+ N++ + + +
Sbjct: 145 NLNFTVVNGKPIRVMFSNR-----DPTL-------RKSGLANVFIKNLEPNIDNKSLYEM 192
Query: 234 FEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F + G + ++ D + S F++F SA A+N +GM+ Q I V
Sbjct: 193 FSSF--GTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVG 246
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 32 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A A+N L G L ++V ++ P S R+ +Y + + K +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTM 136
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLG 280
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 137 TQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194
Query: 281 SQPIRVSPSKTP 292
++PI V + P
Sbjct: 195 TEPITVKFANNP 206
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 43 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 101
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 102 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 147
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 148 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 205
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 206 ITVKFANNP 214
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ +++E L +FS G V RVC D + L +A+V F D R A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P+ R+ S ++ N+ P + K ++
Sbjct: 98 ---QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSGNIFIKNLH---PDIDNKALYD 144
Query: 236 A-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ G++ ++ D ++ + F E A+ AI ALN GM+L Q I V+P
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN--GMLLNGQEIYVAP 200
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ +++E L +FS G V RVC D + L +A+V F D R A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P+ R+ S ++ N+ P + K ++
Sbjct: 98 ---QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSGNIFIKNLH---PDIDNKALYD 144
Query: 236 A-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ G++ ++ D ++ + F E A+ AI ALN GM+L Q I V+P
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN--GMLLNGQEIYVAP 200
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV ++D ++TE L +F+ G V RVC D + L +A+V F ++ AL
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE- 105
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ P + +P R+ + +Y N+D + + F
Sbjct: 106 ---ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAIDNKALHDTFS 155
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G++ ++ D ++R FV + AESA A+ + +GM+L + + V P
Sbjct: 156 AF--GQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGP 208
>gi|167517070|ref|XP_001742876.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779500|gb|EDQ93114.1| predicted protein [Monosiga brevicollis MX1]
Length = 1825
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 28/199 (14%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF 163
+A + + ED RTV+V ++D ++TE+ L F+ CG++VD R+ + + +A++EF
Sbjct: 641 QAHKVEAED---RTVFVKNLDFSVTEDELRARFADCGEIVDVRMPFNHKGKAKGYAYLEF 697
Query: 164 ADEHGARAALNLGGTMLGYYPVRV--------LPSKTAILPVNPTFLPRSEDEREMCSRT 215
A AL+ ++G P+ V +PS LP T + ++
Sbjct: 698 ASASAVNPALSKDRQIMGTRPMLVDRYVDRSQMPS----LPFKHT--------TDKNPKS 745
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAV-AESAILALN 273
++ N+D K +AE+K F G V +RL+ S R +V+F A++A
Sbjct: 746 LFVKNLDYKASEAEIKDLFNK--HGAVEAVRLVTKFDGSRRDFCYVDFVTEADAAKAQAA 803
Query: 274 CSGMVLGSQPIRVSPSKTP 292
G +L + +RV+ SK P
Sbjct: 804 LDGHMLHGRALRVNISKPP 822
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVE 261
PR + E RTV+ N+D V + E++ F A C GE+ +R+ +H + A++E
Sbjct: 639 PRQAHKVEAEDRTVFVKNLDFSVTEDELRARF-ADC-GEIVDVRMPFNHKGKAKGYAYLE 696
Query: 262 FAVAESAILALNCSGMVLGSQPIRV 286
FA A + AL+ ++G++P+ V
Sbjct: 697 FASASAVNPALSKDRQIMGTRPMLV 721
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ +++E L +FS G V RVC D + L +A+V F D R A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P+ R+ S ++ N+ P + K ++
Sbjct: 98 ---QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSGNIFIKNLH---PDIDNKALYD 144
Query: 236 A-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ G++ ++ D ++ + F E A+ AI ALN GM+L Q I V+P
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN--GMLLNGQEIYVAP 200
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALNL 175
+YV ++D ++TE L LFSS GQV RVC D L +A+V + G RA L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
T++ P R++ S+ +P R+ V+ N+D + + F
Sbjct: 115 NYTLIKGRPCRIMWSQR-----DPLL-------RKTGQGNVFIKNLDAAIDNKALHDTF- 161
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTPV 293
A G + ++ D + +S FV + AE+A A+ N +GM+L + + V P
Sbjct: 162 -AAFGNILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVG-HHIPK 219
Query: 294 RPRVTR 299
+ R+++
Sbjct: 220 KDRMSK 225
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ +R+T V++ ++D I + L F++ G ++ C+V D ++ + +
Sbjct: 125 RIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGYG 184
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A A+ N+ G +L V V +P K + V +E +
Sbjct: 185 FVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKV---------EEMKANFTN 235
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILAL 272
+Y NID + E ++ FE G++T L D+ FV + E A A+
Sbjct: 236 IYVKNIDSETTDNEFRELFEKY--GDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAV 292
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 215
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 42 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 100
Query: 167 HGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A A+N L G L ++V ++ P S R+ +Y + + K +
Sbjct: 101 KDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTM 146
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLG 280
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 147 TQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 204
Query: 281 SQPIRVSPSKTP 292
++PI V + P
Sbjct: 205 TEPITVKFANNP 216
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 172 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 220
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV F +SA+ A + G LG
Sbjct: 221 EPY--GRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLG 266
>gi|359067954|ref|XP_002707879.2| PREDICTED: LOW QUALITY PROTEIN: eLAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)-like [Bos
taurus]
Length = 346
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|195445204|ref|XP_002070221.1| GK11939 [Drosophila willistoni]
gi|194166306|gb|EDW81207.1| GK11939 [Drosophila willistoni]
Length = 469
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL RV K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RVFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 164 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 212
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV F +SA+ A + G LG
Sbjct: 213 EPY--GRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLG 258
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|356525215|ref|XP_003531222.1| PREDICTED: uncharacterized protein LOC100790138 [Glycine max]
Length = 975
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G +A ++D++++T+ VS++ +T E+L LF CG VV+C + H FA
Sbjct: 328 KDSTGSPEKASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FA 383
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++E++ A AAL L +G P+ V +K+ LP P
Sbjct: 384 YIEYSKPEEATAALALNNIDVGGRPLNVEMAKS--LPPKP 421
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 216
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAATNAIKHVNGML-------LNEKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLL--GDHVHSTRIAFVEFAVAESAILAL 272
N+D +V E ++ FE GE+T + G+ S F F ESA A+
Sbjct: 240 VKNLDTEVSNEEFRELFEKY--GEITSASISRDGETGKSRGFGFFYFLKHESAAAAV 294
>gi|283945529|ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|283945537|ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|386781798|ref|NP_001247929.1| ELAV-like protein 2 [Macaca mulatta]
gi|73971067|ref|XP_865045.1| PREDICTED: ELAV-like protein 2 isoform 2 [Canis lupus familiaris]
gi|296190040|ref|XP_002743027.1| PREDICTED: ELAV-like protein 2 isoform 3 [Callithrix jacchus]
gi|296190042|ref|XP_002743028.1| PREDICTED: ELAV-like protein 2 isoform 4 [Callithrix jacchus]
gi|311245697|ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa]
gi|332229735|ref|XP_003264043.1| PREDICTED: ELAV-like protein 2 isoform 1 [Nomascus leucogenys]
gi|332229739|ref|XP_003264045.1| PREDICTED: ELAV-like protein 2 isoform 3 [Nomascus leucogenys]
gi|332831658|ref|XP_003312071.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan troglodytes]
gi|332831662|ref|XP_003312072.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan troglodytes]
gi|338719470|ref|XP_003364010.1| PREDICTED: ELAV-like protein 2 isoform 2 [Equus caballus]
gi|344271095|ref|XP_003407377.1| PREDICTED: ELAV-like protein 2-like [Loxodonta africana]
gi|402897263|ref|XP_003911688.1| PREDICTED: ELAV-like protein 2 isoform 2 [Papio anubis]
gi|402897265|ref|XP_003911689.1| PREDICTED: ELAV-like protein 2 isoform 3 [Papio anubis]
gi|402897267|ref|XP_003911690.1| PREDICTED: ELAV-like protein 2 isoform 4 [Papio anubis]
gi|403272640|ref|XP_003928160.1| PREDICTED: ELAV-like protein 2 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403272642|ref|XP_003928161.1| PREDICTED: ELAV-like protein 2 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410042502|ref|XP_003951453.1| PREDICTED: ELAV-like protein 2 [Pan troglodytes]
gi|410978370|ref|XP_003995566.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Felis catus]
gi|426220515|ref|XP_004004460.1| PREDICTED: ELAV-like protein 2 isoform 2 [Ovis aries]
gi|426220517|ref|XP_004004461.1| PREDICTED: ELAV-like protein 2 isoform 3 [Ovis aries]
gi|426361463|ref|XP_004047930.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gorilla gorilla gorilla]
gi|426361465|ref|XP_004047931.1| PREDICTED: ELAV-like protein 2 isoform 3 [Gorilla gorilla gorilla]
gi|426361467|ref|XP_004047932.1| PREDICTED: ELAV-like protein 2 isoform 4 [Gorilla gorilla gorilla]
gi|441622584|ref|XP_004088846.1| PREDICTED: ELAV-like protein 2 [Nomascus leucogenys]
gi|21265137|gb|AAH30692.1| ELAVL2 protein [Homo sapiens]
gi|119578985|gb|EAW58581.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|119578986|gb|EAW58582.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|123981428|gb|ABM82543.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|123996267|gb|ABM85735.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|157928304|gb|ABW03448.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|384945702|gb|AFI36456.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|384945704|gb|AFI36457.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|387541444|gb|AFJ71349.1| ELAV-like protein 2 isoform b [Macaca mulatta]
Length = 346
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 215
>gi|356536490|ref|XP_003536770.1| PREDICTED: nucleolar protein 13-like [Glycine max]
Length = 394
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 11/173 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
+YV I TE+ + F SCG + VDC + A + F E A+ AL L
Sbjct: 151 IYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRALALD 210
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
G +G +++ P K F P + E +R +Y N+ + + E+++FF
Sbjct: 211 GADMGGLFLKIQPYKATRANKASDFAP---EILEGYNR-IYVGNLSWDITEEELRKFFNN 266
Query: 237 ACGGEVTRLRLLGDHVHST--RIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
+ E+T LR D A V+F ++S AL VL +P+R+S
Sbjct: 267 S---EITSLRFGMDKETGEFRGYAHVDFGDSQSLKKALALDQNVLFGRPVRIS 316
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 154 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 211
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 212 ITVKFANNP 220
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ +++ + +L +FS G VV RVC D +S L +A+V + ++ A AL L
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ P + + R R+ + ++ N+DK + + K ++
Sbjct: 96 ----LNFTPINGKPIRI-------MYSNRDPSSRKSGTGNIFIKNLDKSI---DNKALYD 141
Query: 236 AACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
C G + ++ D +R FV+F ESA A++ +GM++ + + V P
Sbjct: 142 TFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGP 197
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLG 176
+Y+ ++++NI +E+L LF+ G + C+V D + V R + FV F + E RA +
Sbjct: 319 LYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMN 378
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 379 GKMVGSKPLYV 389
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 154 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 211
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 212 ITVKFANNP 220
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 33 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 91
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 92 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 137
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 138 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 195
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 196 ITVKFANNP 204
>gi|119578990|gb|EAW58586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_e [Homo sapiens]
Length = 374
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 154 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 211
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 212 ITVKFANNP 220
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A + Q D RT+YV ++D +TEE L +F GQV C++ +P + + FVEF+D
Sbjct: 2 ANKDQGNDCQPRTLYVGNLDTAVTEELLVAVFGQMGQVKGCKIIHEPGND-PYCFVEFSD 60
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A +AL L + + + A P N L S+ ++ ++ ++
Sbjct: 61 HQSAASALLAMNKRLCF--GKEMKVNWATSPGNTPKLDTSKHHH------IFVGDLSPEI 112
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLG 280
+++ F A G+++ R++ D + S FV F A AE+AI +N G LG
Sbjct: 113 ETTQLRDAF--APFGDISDCRVVRDPQTLKSKGYGFVSFVKKADAENAIGTMN--GQWLG 168
Query: 281 SQPIRV 286
S+ IR
Sbjct: 169 SRAIRT 174
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ +++ + +L +FS G VV RVC D +S L +A+V + ++ A AL L
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ P + + R R+ + ++ N+DK + + K ++
Sbjct: 96 ----LNFTPINGKPIRI-------MYSNRDPSSRKSGTGNIFIKNLDKSI---DNKALYD 141
Query: 236 AACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
C G + ++ D +R FV+F ESA A++ +GM++ + + V P
Sbjct: 142 TFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGP 197
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLG 176
+Y+ ++++NI +E+L LF+ G + C+V D + V R + FV F + E RA +
Sbjct: 319 LYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMN 378
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 379 GKMVGSKPLYV 389
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|449266192|gb|EMC77278.1| ELAV-like protein 2 [Columba livia]
Length = 388
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPSAAEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|358248652|ref|NP_001240173.1| uncharacterized protein LOC100814693 [Glycine max]
gi|255644669|gb|ACU22837.1| unknown [Glycine max]
Length = 411
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 11/173 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
YV I TE+ + F SCG + VDC + A + F E A+ AL L
Sbjct: 168 AYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRALALD 227
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
G +G +++ P K F P + E +R +Y N+ + + E+++FF
Sbjct: 228 GADMGGLFLKIQPYKATRANKASDFAP---EILEGYNR-IYVGNLSWDITEEELRKFFN- 282
Query: 237 ACGGEVTRLRLLGDHVHST--RIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
G E+T LR D A V+F+ ++S AL VL +P+R+S
Sbjct: 283 --GCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALALDQNVLFGRPVRIS 333
>gi|414875768|tpg|DAA52899.1| TPA: hypothetical protein ZEAMMB73_898845 [Zea mays]
Length = 34
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/32 (75%), Positives = 29/32 (90%)
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRPRVTRPG 301
+ALNCSGM+LG+ P+RVSPSKTPV+PRV R G
Sbjct: 1 MALNCSGMILGTLPVRVSPSKTPVKPRVNRVG 32
>gi|119578988|gb|EAW58584.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_c [Homo sapiens]
Length = 360
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 154 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 211
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 212 ITVKFANNP 220
>gi|326428919|gb|EGD74489.1| hypothetical protein PTSG_05853 [Salpingoeca sp. ATCC 50818]
Length = 481
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 44/209 (21%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR--------------- 147
+GR ++E+ +RT++V ++ N + L LFS G++ CR
Sbjct: 107 TGRMSAEEKEERNKRTIFVGNLPINTKPKALKKLFSQFGKIESCRFRTTNLMAHKGGAKA 166
Query: 148 -------VCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV-LPSKTAILPVNP 199
V G+ +SV A+V FA++ ARAAL G + +RV + LP P
Sbjct: 167 AVLLRRKVGGEENSV--NAYVVFAEDAMARAALKCNGMVFNERHLRVDMAGSNTRLP--P 222
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH--STRI 257
T +TV+ N+ V + E+ F+ A G V +R++ D V
Sbjct: 223 T-------------KTVFVGNLPFDVTEEELYAAFDEA--GTVAGVRVIRDKVLRVGKGF 267
Query: 258 AFVEFAVAESAILALNCSGMVLGSQPIRV 286
A+V FA+ ES LAL G L ++ +RV
Sbjct: 268 AYVSFALEESVSLALLLDGKKLRTREMRV 296
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D NIT+ +L LF GQV+ RVC D + L + +V +++ A AL+
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S R R+ + ++ N+DK + + F
Sbjct: 79 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTANIFIKNLDKSIDNKALHDTF 126
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D S FV+F ESA A++ +GM++ + + V
Sbjct: 127 SAF--GNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVG 179
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I +++L LFS G + C+V DP + R + FV F+ E +RA +
Sbjct: 302 LYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMN 361
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 362 GKMVVSKPLYV 372
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ ++ ++ L FSS G + V D + + R F FV F AR A+ NL
Sbjct: 243 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLN 302
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
G +G Y R + F +++ ++ + +Y N+D + +++
Sbjct: 303 GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRK 362
Query: 233 FFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAE---SAILALNCSGMVLGSQPIRVS 287
FE C GEV +++ D H S FV FA E +AIL +N G ++G +P+ V+
Sbjct: 363 LFE--CFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMN--GKMVGKKPLYVA 417
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVEFAD-EHGARAAL 173
++YV D++ ++ E++L LFS V VC D L + +V F E RA
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
NL T++ P+RV+ S +PT R+ V+ N++ + + +
Sbjct: 122 NLNFTVVNGKPIRVMFSNR-----DPTL-------RKSGLANVFIKNLEPNIDNKSLYEM 169
Query: 234 FEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
F + G + ++ D + S F++F SA A+N +GM+ Q I V
Sbjct: 170 FSSF--GTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFV 222
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N++E +L LF+ GQV+ RVC D + L +A+V + + A A
Sbjct: 2 VSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRA 61
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L L L + PV K V F R R+ + ++ N+D+ + +
Sbjct: 62 LEL----LNFTPVN---GKA----VRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHD 110
Query: 233 FFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F G + ++ D + S FV+F ESA +A++ +GM++ + + V P
Sbjct: 111 TF--VSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGP 166
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 107 FRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FV 161
+ +R++ + R +Y+ ++D ++ +ERL +F+ G + C+V D + + FV
Sbjct: 269 YEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFV 328
Query: 162 EF-ADEHGARAALNLGGTMLGYYPVRV 187
+ A E RA + + G M+G P+ V
Sbjct: 329 AYSAPEEANRATIEMNGKMIGSKPIYV 355
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 75 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 134
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 135 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 182
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 183 --AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 235
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 313
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 216
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAATNAIKHVNGML-------LNEKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILAL 272
N+D KV E ++ F G++T + D S FV F ESA A+
Sbjct: 240 VKNLDTKVTNEEFRELFGKY--GDITSASITHDSETGKSRGFGFVNFVKHESAAAAV 294
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 215
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 167 --AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 219
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 165 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 213
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S + FV F +SA+ A + G LG
Sbjct: 214 EPY--GRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLG 259
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 34 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 92
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 93 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 138
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 139 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 196
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 197 ITVKFANNP 205
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ ++ ++ L FSS G + V D + + R F FV F AR A+ NL
Sbjct: 242 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLN 301
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
G +G Y R + F +++ ++ + +Y N+D + +++
Sbjct: 302 GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRK 361
Query: 233 FFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAE---SAILALNCSGMVLGSQPIRVS 287
FE C GEV +++ D H S FV FA E +AIL +N G ++G +P+ V+
Sbjct: 362 LFE--CFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMN--GKMVGKKPLYVA 416
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVEFAD-EHGARAAL 173
++YV D++ ++ E++L LFS V VC D L + +V F E RA
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
NL T++ P+RV+ S +PT R+ V+ N++ + + +
Sbjct: 121 NLNFTVVNGKPIRVMFSNR-----DPTL-------RKSGLANVFIKNLEPNIDNKSLYEM 168
Query: 234 FEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F + G + ++ D + S F++F SA A+N +GM+ Q I V
Sbjct: 169 FSSF--GTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVG 222
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ +P R+ V+ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 167 --AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 218
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
L +A+V F D R A+ L Y P++ + +P+ R+ S
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 215 TVYCTNIDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
++ N+ P + K ++ + G++ ++ D ++ + F E A+ AI
Sbjct: 127 NIFIKNLH---PDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 270 LALNCSGMVLGSQPIRVSP 288
ALN GM+L Q I V+P
Sbjct: 184 DALN--GMLLNGQEIYVAP 200
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 73 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 131
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 132 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 177
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 178 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 235
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 236 ITVKFANNP 244
>gi|150865513|ref|XP_001384763.2| U4/U6 snRNA-associated splicing factor [Scheffersomyces stipitis
CBS 6054]
gi|149386769|gb|ABN66734.2| U4/U6 snRNA-associated splicing factor [Scheffersomyces stipitis
CBS 6054]
Length = 837
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 29/244 (11%)
Query: 42 MFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG--- 98
MF ++ LA FPS HT F + A+ Q A+ +N N +Q
Sbjct: 552 MFEQIGKLASIRFPSQRSNHT-RRFCYVEYENANSALQ-AVKIYNGKVLVDNVLHQDFAL 609
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR- 157
+ +S ++ RE + + V +ID + E + G+F CG V + +
Sbjct: 610 QVAISDSEAKSDRETKMESQIRVKNIDYMLDIEAIKGMFVECGTVTSVVIPKFQRNNFNQ 669
Query: 158 ----FAFVEFADEHGARAALNLGGTMLGYYPVRV-LPSKTAILP--------VNPTFLPR 204
A+V F H A+ A+ + G ++G P+ V L S++ + + +
Sbjct: 670 KNNGLAYVTFESNHEAQKAVQMDGKIIGGRPISVALSSRSQKYSQSHKHDNGYSASKYSQ 729
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV 264
ED RTV TN+D + +VK FF + GG V+++ + +H +A VEF
Sbjct: 730 FED-----VRTVGVTNVDNTLTAEQVKLFF-STNGGVVSKVEIFPEHA----VAMVEFEK 779
Query: 265 AESA 268
A A
Sbjct: 780 ASDA 783
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y +++ K + Q E
Sbjct: 91 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSSLPKTMNQKE 136
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + S+PI
Sbjct: 137 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPI 194
Query: 285 RVSPSKTP 292
V + P
Sbjct: 195 TVKFANNP 202
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 169 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|331219745|ref|XP_003322549.1| hypothetical protein PGTG_04086 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 680
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAALN 174
R T+YV++ ++ +E + FS G + D R S RF +++F A AAL
Sbjct: 320 RSTLYVTNFPEDANDEWIRSKFSQFGSIFDVRWPSKRFKSTRRFCYIQFTSPASAEAALQ 379
Query: 175 LGGTMLGYYPVRVLP-SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L + + V P K ++L +PT ++ + + +Y T + K V + ++++
Sbjct: 380 L-------HNLEVSPKQKMSVLISDPT-RKQTRSDNHANEKELYITCLSKYVQEDDLRKL 431
Query: 234 FEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
F + GE+ +R++ D HS AFVEF SA AL+ + + L + I V+ S
Sbjct: 432 F--SQFGEIKGVRVVLDQAGHSKGFAFVEFQNEMSAKAALSMNNVELKKRRIGVTIS 486
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 34/209 (16%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
+ +Y++ + + + E+ L LFS G++ RV D HS FAFVEF +E A+AAL+
Sbjct: 412 KELYITCLSKYVQEDDLRKLFSQFGEIKGVRVVLDQAGHSK-GFAFVEFQNEMSAKAALS 470
Query: 175 LGGTMLGYYPVRVLPSKTAILPV---NPTF-----LPRSEDEREMCSRTVYCTNIDKKVP 226
+ L + V S L + N TF L + D R SR+V +NI +
Sbjct: 471 MNNVELKKRRIGVTISSAKGLSLARKNTTFKDETKLSSATDHR---SRSVRVSNIAEGTQ 527
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA-ILALNCSGMVLGSQPIR 285
+A ++Q FE G+V + + A VEFA+ + A + L+ +V+ Q +
Sbjct: 528 EALIQQAFEQF--GKVLKTITYPEKNE----ALVEFALEKDAGRVFLHKEPIVINDQKVE 581
Query: 286 V-------------SPSKTPVRPRVTRPG 301
V S S TP+ PR T G
Sbjct: 582 VSVPTATLKSGMAASSSFTPLLPRSTVKG 610
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ ++E +L +FS GQVV RVC D L +A+V + + A A
Sbjct: 22 VSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRA 81
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L + P+R++ F R R+ + ++ N+DK + +
Sbjct: 82 LELLNFNAVNGKPIRIM------------FSHRDPSIRKSGTANIFIKNLDKSIDNKALH 129
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D S FV+F ESA A+ +GM+L + + V P
Sbjct: 130 DTF--AAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGP 186
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQ 79
+K NN+ K T +L +F P++ ++ F +N ADD +
Sbjct: 200 SKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVV-MRDNEGKSKCFGFVNFEHADDAAK 258
Query: 80 SAIDNFNNNRRRRNNFNQGR-KRLSGR------AFRAQREDSVRR----TVYVSDIDQNI 128
A++ N + + GR ++ S R F +R++ + + +Y+ ++D I
Sbjct: 259 -AVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTI 317
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYYPVR 186
+E+L +FS G +V C+V DP R + FV F+ + RA + G M+G P+
Sbjct: 318 DDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLY 377
Query: 187 V----------------LPSKTAILPVNPTFLP 203
V +T + P PT LP
Sbjct: 378 VALAQRKEERRNRLQAAFAQRTPVGPAVPTSLP 410
>gi|403162308|ref|XP_003890369.1| hypothetical protein PGTG_21014 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172551|gb|EHS64663.1| hypothetical protein PGTG_21014 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1087
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAALN 174
R T+YV++ ++ +E + FS G + D R S RF +++F A AAL
Sbjct: 732 RSTLYVTNFPEDANDEWIRSKFSQFGSIFDVRWPSKRFKSTRRFCYIQFTSPASAEAALQ 791
Query: 175 LGGTMLGYYPVRVLP-SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L + + V P K ++L +PT ++ + + +Y T + K V + ++++
Sbjct: 792 L-------HNLEVSPKQKMSVLISDPT-RKQTRSDNHANEKELYITCLSKYVQEDDLRKL 843
Query: 234 FEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
F + GE+ +R++ D HS AFVEF SA AL+ + + L + I V+ S
Sbjct: 844 F--SQFGEIKGVRVVLDQAGHSKGFAFVEFQNEMSAKAALSMNNVELKKRRIGVTIS 898
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 34/209 (16%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
+ +Y++ + + + E+ L LFS G++ RV D HS FAFVEF +E A+AAL+
Sbjct: 824 KELYITCLSKYVQEDDLRKLFSQFGEIKGVRVVLDQAGHSK-GFAFVEFQNEMSAKAALS 882
Query: 175 LGGTMLGYYPVRVLPSKTAILPV---NPTF-----LPRSEDEREMCSRTVYCTNIDKKVP 226
+ L + V S L + N TF L + D R SR+V +NI +
Sbjct: 883 MNNVELKKRRIGVTISSAKGLSLARKNTTFKDETKLSSATDHR---SRSVRVSNIAEGTQ 939
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA-ILALNCSGMVLGSQPIR 285
+A ++Q FE G+V + + A VEFA+ + A + L+ +V+ Q +
Sbjct: 940 EALIQQAFEQF--GKVLKTITYPEKNE----ALVEFALEKDAGRVFLHKEPIVINDQKVE 993
Query: 286 V-------------SPSKTPVRPRVTRPG 301
V S S TP+ PR T G
Sbjct: 994 VSVPTATLKSGMAASSSFTPLLPRSTVKG 1022
>gi|118785284|ref|XP_314526.3| AGAP010553-PA [Anopheles gambiae str. PEST]
gi|116128011|gb|EAA09944.4| AGAP010553-PA [Anopheles gambiae str. PEST]
Length = 643
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 92 RNNFNQGRKRLSGRAFRAQREDSVRRT--VYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149
+ +++L+ + + QR+ ++ VYV I + E+ + F G + +
Sbjct: 133 KQTLAHQQQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMS 192
Query: 150 GDPHSVLR--FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
DP + FAFVE+ GA+ AL + G MLG ++V + + +P + +
Sbjct: 193 WDPITQKHKGFAFVEYEIPEGAQLALEQMNGAMLGGRNIKV--GRPSNMPQAQQVIDEIQ 250
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVA 265
+E + +R +Y +I + + ++K FE A G +T G+ VH+ + F+E+
Sbjct: 251 EEAKSYNR-IYIASIHPDLTEEDIKSVFE-AFGPIMTCKMSQGNAVHTHKGYGFIEYQTN 308
Query: 266 ESAILALNCSGMV-LGSQPIRVSPSKTP 292
+SAI A+ + LG Q +RV S TP
Sbjct: 309 QSAIEAIASMNLFDLGGQLLRVGRSITP 336
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 167 --AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 219
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 30 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 89
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y +++ K + Q E
Sbjct: 90 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSSLPKTMNQKE 135
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + S+PI
Sbjct: 136 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPI 193
Query: 285 RVSPSKTP 292
V + P
Sbjct: 194 TVKFANNP 201
>gi|33359633|gb|AAQ17064.1| nucleolin 2 [Cyprinus carpio]
Length = 643
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 24/153 (15%)
Query: 123 DIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLG 181
D D + + +A FS G ++ D RV G +F +V+FA E + AL L G L
Sbjct: 230 DKDFDEIKSAIAKFFSKEGLEIQDVRVGG----TKKFGYVDFASEEELQKALGLNGKKLM 285
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSED-EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG 240
PV++ +K+ S+D ++E SRT++ N+ V Q E+K+ F+ A
Sbjct: 286 GQPVKLDKAKSK---------ENSQDSKKERDSRTLFVKNLPYSVTQEELKEIFDQAV-- 334
Query: 241 EVTRLRL-LGDHVHSTRIAFVEF---AVAESAI 269
+R+ +G+ S IA++EF A+AE A+
Sbjct: 335 ---DIRIPMGNSGSSRGIAYLEFKSEAIAEKAM 364
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGHGNVFIKNLDGAIDNKALHDTF 169
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D + +++ FV + AE+A A+ + +GM+L + + V P
Sbjct: 170 --AAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVG-HHIP 226
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 227 KKDRMSK 233
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 169 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 116 RRTVYVSDIDQNIT--EERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF---ADEHG 168
R +V+V D+ ++ EE + LFSS VV +VC D L + +V F AD
Sbjct: 7 RTSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEK 66
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ALN G G Y +RV+ F R +R+ + ++ +D V
Sbjct: 67 VIDALNFTGIAPGRY-IRVM------------FAIRDPLQRKSGANNIFVKKLDAAVSAK 113
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
++ F + CG ++ L HS FV+F A+ A AL+ +G +G + V+P
Sbjct: 114 ALQAAF-SRCGRVLSCKVALDSEGHSKGYGFVQFETADGAKAALDMNGAKVGDSEVEVAP 172
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +YV + +IT+++L +F+ G++ C + + + LR FAFV F D+ A AA+
Sbjct: 289 RNLYVKHLPDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAM 346
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+DQ++ E +L LF QVV RVC D L +A+V F+ A A+
Sbjct: 36 SLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME- 94
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + PV P + I +P+ R+ V+ N+D + ++ F
Sbjct: 95 ---HLNFTPVNGKPIRIMISNRDPSI-------RKSGYANVFIKNLDLSIDNKALRDTF- 143
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
AA G ++ + + S FV+F ESA +++ +GM+L + + V
Sbjct: 144 AAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVG 196
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ + T++ L LF+ G + V D + + F FV F + A AA+ L
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER-----EMCSRTVYCTNIDKKVPQAEVK 231
GT+LG + + E ER ++ +Y N+D + ++K
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+ F G +T +++ D H S FV F+ + A ALN +G + G +P+ V+
Sbjct: 335 ELFSEY--GTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVA 390
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 216
>gi|356510930|ref|XP_003524186.1| PREDICTED: uncharacterized protein LOC100796921 [Glycine max]
Length = 969
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G +A ++D++++T+ VS++ +T E+L LF CG VV+C + H FA
Sbjct: 322 KDSAGSPEKASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECAITDSKH----FA 377
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++E++ A AAL L +G P+ V +K+ LP P
Sbjct: 378 YIEYSKPEEATAALALNNIDVGGRPLNVEMAKS--LPQKP 415
>gi|393212445|gb|EJC97945.1| hypothetical protein FOMMEDRAFT_97432 [Fomitiporia mediterranea
MF3/22]
Length = 1017
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 23/209 (11%)
Query: 95 FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-H 153
+ +KR++G+ + + T+YV++ + + + + LF G + D R
Sbjct: 661 LTKDKKRINGQEISVHL--AWQSTLYVTNFPEKVDDAYIRQLFDQFGVIFDVRWPSKKFK 718
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC- 212
+ RF +V+F + A+AAL+L GT L P LP+N F+ E ++E
Sbjct: 719 ATRRFCYVQFTSKEAAQAALSLHGTELE-------PG----LPMN-VFISNPERKKERTD 766
Query: 213 ----SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAES 267
R VY + K V + ++K+ F+ G V +R+ D + +AFVEF S
Sbjct: 767 AGADDREVYVAGLSKFVIRDDLKKLFK--TFGPVKDIRVTKDDTGLCKGVAFVEFEDEPS 824
Query: 268 AILALNCSGMVLGSQPIRVSPSKTPVRPR 296
A AL + + ++ I V+ S + VR R
Sbjct: 825 AQRALQANNHDVKNRRIAVTMSDSRVRAR 853
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 29/189 (15%)
Query: 92 RNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
R++ N+ K S + RE+S TV+V+D+ TE+ L LF CG + + ++
Sbjct: 585 RSDGNKKAKMGSTPPLKRDRENS---TVFVADLPSGATEDDLTALFKDCGDIREIKITSL 641
Query: 152 PHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
+S R A +EF D A L + + V
Sbjct: 642 ANS--RVATIEFVDRESVPAGLTKDKKRINGQEISV---------------------HLA 678
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHST-RIAFVEFAVAESAIL 270
T+Y TN +KV A ++Q F+ G + +R +T R +V+F E+A
Sbjct: 679 WQSTLYVTNFPEKVDDAYIRQLFDQF--GVIFDVRWPSKKFKATRRFCYVQFTSKEAAQA 736
Query: 271 ALNCSGMVL 279
AL+ G L
Sbjct: 737 ALSLHGTEL 745
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 169 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+DQ++ E +L LF QVV RVC D L +A+V F+ A A+
Sbjct: 36 SLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME- 94
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + PV P + I +P+ R+ V+ N+D + ++ F
Sbjct: 95 ---HLNFTPVNGKPIRIMISNRDPSI-------RKSGYANVFIKNLDLSIDNKALRDTF- 143
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
AA G ++ + + S FV+F ESA +++ +GM+L + + V
Sbjct: 144 AAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVG 196
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ + T++ L LF+ G + V D + + F FV F + A AA+ L
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER-----EMCSRTVYCTNIDKKVPQAEVK 231
GT+LG + + E ER ++ +Y N+D + ++K
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+ F G +T +++ D H S FV F+ + A ALN +G + G +P+ V+
Sbjct: 335 ELFSEY--GTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVA 390
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 30 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 89
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y +++ K + Q E
Sbjct: 90 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSSLPKTMNQKE 135
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + S+PI
Sbjct: 136 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPI 193
Query: 285 RVSPSKTP 292
V + P
Sbjct: 194 TVKFANNP 201
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+D ++TE L +FS GQV RVC B L +A+V + A AL+
Sbjct: 61 SLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDT 120
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + ++ + +P+ R+ + V+ N+ P + K ++
Sbjct: 121 ----LAFCDIKGKQCRIMWSQRDPSM-------RKKGTGNVFIKNLH---PDIDNKTLYD 166
Query: 236 A-ACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G++ ++ D H HS FV + AESA A+ N +GM+L + + V+P
Sbjct: 167 TFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAP 222
>gi|330812809|ref|XP_003291310.1| hypothetical protein DICPUDRAFT_38760 [Dictyostelium purpureum]
gi|325078525|gb|EGC32172.1| hypothetical protein DICPUDRAFT_38760 [Dictyostelium purpureum]
Length = 587
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA-LNL 175
+ V+ ++ + +E+ + GLFS G + ++ + AF+ F D + A AA NL
Sbjct: 117 KIVWAGNVHPDSSEDEIRGLFSQFGYIQAIKII----PAKQCAFITFGDVNAAIAAQYNL 172
Query: 176 GGTMLGYYPVRVLPSKTAILPV-------NPTF-LPRSEDEREMCSRTVYCTNIDKKVPQ 227
GT + YP+++ K P P F P + E+ ++ ++ NI V
Sbjct: 173 NGTPIRGYPLKLGFGKVENAPAAFQQQQQQPHFNKPPHHLQEEVPTKNLWLGNIGPSVTS 232
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
+KQ F+ G V +R+L AFV F ESAI A N +G ++ P+++
Sbjct: 233 ETLKQLFDQF--GNVDNIRILV----GRGCAFVNFFTVESAIAARNNLTGTMVCGMPLKI 286
Query: 287 S 287
+
Sbjct: 287 N 287
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE 166
Q+ DS ++YV D+D +++E L +FS G V RVC D + L +A+V FAD
Sbjct: 32 GQQSDSNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADH 91
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
+ A+ L Y P++ + +P R+ + ++ N++ +
Sbjct: 92 EAGKVAIE----RLNYTPIKGRLCRIMWSQRDPAL-------RKKGNGNIFIKNLNADID 140
Query: 227 QAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPI 284
+ F + G + ++ D + +S FV F +A A++ +GM+L Q I
Sbjct: 141 NKALYDTF--SVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEI 198
Query: 285 RVSP 288
V+P
Sbjct: 199 YVAP 202
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y +++ K + Q E
Sbjct: 91 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSSLPKTMNQKE 136
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH---STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
++Q F G + R+L D V S + F+ F AE AI LN + S+P
Sbjct: 137 MEQLFSQY--GRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEP 194
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 195 ITVKFANNP 203
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 11/226 (4%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
A+DN +A+ + +R+R++ + R + A TV+VS++D TEE +
Sbjct: 645 AEDNGLTALLSDARVKRQRDSDDAQAPRFTLPEKHAHDVSKDPVTVFVSNLDFKATEEMI 704
Query: 134 AGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPS-- 190
F G +VD R+ P R + FVEF+ A+ AL L + P+ V PS
Sbjct: 705 RSQFEQIGNIVDVRLVRKPTGRSRGYGFVEFSSPEAAQKALALDRQPVLNRPMYVSPSVD 764
Query: 191 --KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL 248
K P + D +T++ N+ + ++ FE R+
Sbjct: 765 KPKDGDGPAPSRYAQDGVD-----PKTLFVRNLSSLCRRDDLVTTFEKFAKVVDVRMTRH 819
Query: 249 GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
D + R A+VEFA E A LAL G V+ QPI P +
Sbjct: 820 RDGRFTGR-AYVEFANEEDAKLALAADGTVVRGQPISAQVCNPPTK 864
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 169 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 167 --AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 219
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|449514035|ref|XP_002190678.2| PREDICTED: ELAV-like protein 2-like [Taeniopygia guttata]
Length = 380
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGPSLGYGFVNYVDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+ A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 KKAVNTLNGFRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQT 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GHIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
+ V + P
Sbjct: 226 VTVKFANNP 234
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALE- 101
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + PV P + + R R+ + ++ N+DK + + F
Sbjct: 102 ---MLNFTPVNGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFS 151
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ + ++ FV++ ESA A+N +GM+L + + V P
Sbjct: 152 AF--GNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGP 204
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 29/203 (14%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFV 161
R++++DS T++V D+ ++T+ L F + +VV R+ G + FV
Sbjct: 152 RSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTG---RTKGYGFV 208
Query: 162 EFADE-HGARAALNLGGTMLGYYPVRVLPS--KTAILPVNP--TFL---PR-SEDEREMC 212
F++E RA + G + P+R+ P+ KT P ++L P+ S++E +
Sbjct: 209 RFSEESEQMRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPN 268
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAI 269
+ T++ N+D V ++Q F GE+ +++ R FV+FA AE A+
Sbjct: 269 NTTIFVGNLDPNVTDDHLRQVFSQY--GELVHVKIPA----GKRCGFVQFADRSCAEEAL 322
Query: 270 LALNCSGMVLGSQPIRVSPSKTP 292
LN G +LG Q +R+S ++P
Sbjct: 323 RVLN--GTLLGGQNVRLSWGRSP 343
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 10/194 (5%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCG-----QVVDCRVCGDPHSVLRFAFVEFAD 165
+E+ +RTV+V + + ++L F G Q+V RV G V +VEFAD
Sbjct: 206 QEERDKRTVFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGV---GYVEFAD 262
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
E + AL L G L P+ V ++ T + + +Y NI +
Sbjct: 263 EESVQKALELTGQKLMNIPIIVQLTEAEKNRQARTSEGQPTQSNGIPFHRLYVGNIHFSI 322
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPI 284
+++++ FE E +L+ D S FV+FA ++ A +AL +G + +PI
Sbjct: 323 EESDLRDVFEPFGELEFVQLQKE-DTGRSKGYGFVQFAKSDEAKIALEKMNGFEVAGRPI 381
Query: 285 RVSPSKTPVRPRVT 298
RV P T
Sbjct: 382 RVGLGSDKFTPETT 395
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 120
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 121 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 166
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 167 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 224
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 225 ITVKFANNP 233
>gi|242073268|ref|XP_002446570.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
gi|241937753|gb|EES10898.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
Length = 423
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 35/237 (14%)
Query: 73 FADDNKQSAIDNF------NNNRRRRNN---FNQGRKRLSGRAFRAQREDSVRRTVYVSD 123
F+ + + A+ NF N +R + N ++ G KR E + +++V D
Sbjct: 150 FSHASAEKALQNFTGHVMPNTDRAFKLNWASYSMGEKR---------SEVASDHSIFVGD 200
Query: 124 IDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFADEHGARAALN-LGGTM 179
+ ++T+E L LFSS + V +V D ++ + FV F D++ A++ + G
Sbjct: 201 LAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVY 260
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
P+R+ P+ + + + +RTVY +D V + E+++ F A
Sbjct: 261 CSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAF--AKY 318
Query: 240 GEVTRLRL-LGDHVHSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRVSPSKTP 292
G++ +++ LG + FV+FA AE A+ LN G ++G Q +R+S ++P
Sbjct: 319 GDLASVKIPLG-----KQCGFVQFASRTDAEEALQGLN--GSLIGKQAVRLSWGRSP 368
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV + +SA+ A + G LG
Sbjct: 224 EPY--GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV ++D ++E L +FS G V RVC D + L +A+V F D + A+
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIE- 94
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P R+ S ++ N+ P + K FE
Sbjct: 95 ---QLNYTPIKGRLCRIMWSQRDPAL-------RKKGSGNIFIKNLH---PDIDNKALFE 141
Query: 236 A-ACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQPIRVSPSK 290
+ G + ++ D ++ FV F + A+ AI ALN GM+L Q I V+P
Sbjct: 142 TFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALN--GMLLNGQEIYVAPHL 199
Query: 291 T 291
T
Sbjct: 200 T 200
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEE 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTPV 293
AA G ++ + +H +S FV + +++A A+ + +GM+L + + V P
Sbjct: 164 -AAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVG-HHIPK 221
Query: 294 RPRVTR 299
+ R+++
Sbjct: 222 KDRMSK 227
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 103 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 161
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 162 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 207
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 208 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 265
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 266 ITVKFANNP 274
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGAR 170
S ++Y+ ++D +TE L LF+S G V RVC D + L +A+V F + E G +
Sbjct: 66 STSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 125
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A L T++ P R++ S+ R R+M + V+ N+D + +
Sbjct: 126 ALDELNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKAL 173
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
F A G++ ++ D + +++ FV F +SA A+ + +GM+L + + V
Sbjct: 174 HDTFSAF--GKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYV 229
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 38/186 (20%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPL--AKEFFPSYYHQHTDHHFSVINNNFAD-DNKQS 80
NL+ +E EFT KL + + K+ L AK+ + F+ +N FA D+ Q
Sbjct: 256 NLDLDTTEEEFT--KLFEKYGKITSLSLAKDNAGKF------RGFAFVN--FATHDSAQQ 305
Query: 81 AIDNFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRR----------------TVYVSD 123
A+D N+ + G+K GRA + +R++ +R+ ++V +
Sbjct: 306 AVDELNDFEYK------GKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKN 359
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG 181
+ I +ERL FS+ G + +V D ++ + F FV +++ E +A + ML
Sbjct: 360 LQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLA 419
Query: 182 YYPVRV 187
P+ V
Sbjct: 420 GKPLYV 425
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 167 --AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 219
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 106 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDNAIDNKALHDTF 153
Query: 235 EAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +S FV + AE+A A+ + +GM+L + + V
Sbjct: 154 --AAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 206
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + + +
Sbjct: 117 RIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYG 176
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 177 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 229
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID ++ E + FEA GE+T L D +R FV +A ESA A+
Sbjct: 230 IKNIDLEITDDEFRVMFEAF--GEITSATLSHDQDGKSRGFGFVNYANHESAEAAV 283
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + Q++T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 34 EDS-KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 92
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 93 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 138
Query: 229 EVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 139 ELEQLFSQY--GRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEP 196
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 197 ITVKFANNP 205
>gi|195400098|ref|XP_002058655.1| GJ14540 [Drosophila virilis]
gi|194142215|gb|EDW58623.1| GJ14540 [Drosophila virilis]
Length = 472
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL RV K + VN P + + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RVFLDKE--IKVNWATSPGNTPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L +F+S G V RVC D L +A+V + A AAL
Sbjct: 32 SLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALE- 90
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +PT R+ + ++ N+D+ + + K F++
Sbjct: 91 ---SLNYIDIKGHPTRIMWSNKDPTL-------RKSGAGNIFVKNLDRSI---DTKAFYD 137
Query: 236 A-ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV + ESA A+ +GMV+G + + VSP
Sbjct: 138 TFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSP 193
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + ++ ++R++ ++V ++D++I + FS G ++ C+V D + V + +
Sbjct: 103 RIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSKGYG 162
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV-- 216
FV + E A+ A+ + G ++G V V P F+ + +R+ S V
Sbjct: 163 FVHYDTEESAKEAIEKVNGMVIGGKKVEVSP-----------FIKK--QDRDPASVDVFT 209
Query: 217 --YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILA 271
Y N + +KQF + GE+T + + D + AFV FA +A+ A+ A
Sbjct: 210 NLYVRNFPVSWDEEALKQFLDKY--GEITSMMIKEDG-KGRKFAFVNFAEPEMAKEAVEA 266
Query: 272 LNCSGMVLGSQPIRVSP 288
LN + + GS+P+ V P
Sbjct: 267 LNGTKLEEGSEPLLVCP 283
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>gi|390458027|ref|XP_003732041.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897271|ref|XP_003911692.1| PREDICTED: ELAV-like protein 2 isoform 6 [Papio anubis]
gi|426361471|ref|XP_004047934.1| PREDICTED: ELAV-like protein 2 isoform 6 [Gorilla gorilla gorilla]
Length = 390
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 122
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 AEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQ 168
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
E++Q F G + R+L D V S + F+ F AE AI LN ++
Sbjct: 169 KELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 226
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 227 PITVKFANNP 236
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 55/228 (24%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT--------------------------------VYCTNIDKKVPQAEVKQFFEAACGG 240
+ +Y N+D + +++ F G
Sbjct: 186 EKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPF--G 243
Query: 241 EVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 244 TITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVA 291
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG 216
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAATNAIKHVNGML-------LNEKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLL--GDHVHSTRIAFVEFAVAESAILAL 272
N+D +V E ++ FE GE+T + G+ S FV F ESA A+
Sbjct: 240 VKNLDTEVSNEEFRELFEKY--GEITSASISRDGETGKSRGFGFVNFVKHESAAAAV 294
>gi|327263685|ref|XP_003216648.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Anolis carolinensis]
Length = 390
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 122
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 AEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQ 168
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
E++Q F G + R+L D V S + F+ F AE AI LN ++
Sbjct: 169 KELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 226
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 227 PITVKFANNP 236
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHG 168
+ ++V ++YV D+D +++E L +FS G V RVC D + L +A+V F D
Sbjct: 29 QSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDA 88
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+ A+ L + P++ + +P+ R+ + ++ N+ P
Sbjct: 89 AKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLH---PDI 134
Query: 229 EVKQFFEA-ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNC-SGMVLGSQPIR 285
+ K ++ + G + ++ D ++ +V F ESA A++ +GM+L Q I
Sbjct: 135 DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIY 194
Query: 286 VSP 288
V P
Sbjct: 195 VGP 197
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + Q++T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 42 EDS-KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 100
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 146
Query: 229 EVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 147 ELEQLFSQY--GRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEP 204
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 205 ITVKFANNP 213
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 106 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDNAIDNKALHDTF 153
Query: 235 EAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +S FV + AE+A A+ + +GM+L + + V
Sbjct: 154 --AAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 206
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + + +
Sbjct: 117 RIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYG 176
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 177 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 229
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID ++ E + FEA GE+T L D +R FV +A ESA A+
Sbjct: 230 IKNIDLEITDDEFRTMFEAF--GEITSATLSHDQDGKSRGFGFVNYANHESAEAAV 283
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV + +SA+ A + G LG
Sbjct: 224 EPY--GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 97/190 (51%), Gaps = 20/190 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL RV K + VN P + + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RVFLDKE--IKVNWATSPGNTPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D H ++ ++FV+ A AE+AI ++N G +GS+ IR
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQSMN--GQWIGSRNIR 167
Query: 286 VSPSKTPVRP 295
+ S + P
Sbjct: 168 TNWSTRKLPP 177
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 92 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 150
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 151 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 196
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 197 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 254
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 255 ITVKFANNP 263
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG 216
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A+ A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAV---AESAILAL 272
NID+ + E + FE GE+T L D S FV F A +A+ AL
Sbjct: 240 VKNIDQDTTEEEFRDLFEKF--GEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 273 N 273
N
Sbjct: 298 N 298
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 54 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 113
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 114 LNYTLIKGKPCRIMWSQ------------RDPALRKTGHGNIFIKNLDAAIDNKALHDTF 161
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
A G + ++ D +R FV + AE+A A+ + +GM+L + + V P
Sbjct: 162 --AAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVG-HHIP 218
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 219 KKDRMSK 225
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFA 263
+ VY N + +++ FE G +T +++ S+R +AF +
Sbjct: 186 EKAKLFTNVYVKNFGEDFSDEMLREMFEKY--GRITSHKVMYKEDGSSRGFGFVAFEDPD 243
Query: 264 VAESAILALNCSGMVLGSQPIRVS 287
AE A + LN +V G +P+ V
Sbjct: 244 AAERACMELNGKELVEG-KPLYVG 266
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-N 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDIIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A ++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
>gi|449433175|ref|XP_004134373.1| PREDICTED: uncharacterized protein LOC101203535 [Cucumis sativus]
Length = 936
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D+++RT+ VS++ +T E+L LFS CG VV+C + H FA++E++ A AA
Sbjct: 334 DALKRTLQVSNLSPLLTVEQLKQLFSFCGTVVECTITDSKH----FAYIEYSKPEEATAA 389
Query: 173 LNLGGTMLGYYPVRV-----LPSKTAILPVNPTF 201
L L +G P+ V LP K A NP+
Sbjct: 390 LALNNMDVGGRPLNVEMAKSLPQKPAA--ANPSL 421
>gi|389744897|gb|EIM86079.1| hypothetical protein STEHIDRAFT_98435 [Stereum hirsutum FP-91666
SS1]
Length = 1064
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 23/227 (10%)
Query: 77 NKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
N A F+ + +KR++G + R T+YV++ + + +E + +
Sbjct: 686 NTHVATVEFSERESVPAALTKDKKRINGEEVAVHL--AWRSTLYVTNFPERVDDEEVRKI 743
Query: 137 FSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL 195
F G + D R + RF +V+F A+A+L L G L P+ L
Sbjct: 744 FGKYGLIFDVRWPSKKFKATRRFCYVQFTSPDAAKASLELHGHELE-------PN----L 792
Query: 196 PVNPTFLPRSEDEREMC-----SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD 250
P+N ++ E ++E +R VY + + K ++++++ F+ G + +R+ D
Sbjct: 793 PLN-VYISNPERKKERTDADANAREVYVSGLSKFADKSDLERVFKTY--GPIKEIRMTVD 849
Query: 251 HVHSTR-IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPR 296
++ AFVEF + A+ ALN + L ++ + V+ S + VR R
Sbjct: 850 EQGRSKGFAFVEFEQEKDALNALNANNHELKARRMAVTMSDSRVRSR 896
Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 26/167 (15%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
+ D TV+V+D+ N T++ L LF CG + D ++ P++ A VEF++
Sbjct: 644 KRDRENCTVFVADLPSNTTDDDLKALFKDCGSIRDIKITSLPNT--HVATVEFSERESVP 701
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AAL + V V RS T+Y TN ++V EV
Sbjct: 702 AALTKDKKRINGEEVAV------------HLAWRS---------TLYVTNFPERVDDEEV 740
Query: 231 KQFFEAACGGEVTRLRLLGDHVHST-RIAFVEFAVAESAILALNCSG 276
++ F G + +R +T R +V+F ++A +L G
Sbjct: 741 RKIFGKY--GLIFDVRWPSKKFKATRRFCYVQFTSPDAAKASLELHG 785
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHG 168
E++ ++YV D++ + TE +L LFS+ G VV RVC D L +A+V F+ +
Sbjct: 38 ENASNTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDA 97
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ARA L ++ P+R+L S+ +PT R+ ++ N+DK +
Sbjct: 98 ARAIDVLNFQVVNGKPIRILYSQR-----DPTI-------RKSGVGNIFIKNLDKDIDTV 145
Query: 229 EVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++ F A G + ++ D +S F++F A A+ AI +N GM L + +
Sbjct: 146 ALRDTF--AQFGNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVN--GMELNDKVV 201
Query: 285 RVSP 288
V P
Sbjct: 202 YVGP 205
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 14/188 (7%)
Query: 13 AANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNN 72
A T K NN+ K E T ++L +F P+ S F +
Sbjct: 210 AERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMI-SKDEDGKSKGFGFVCYE 268
Query: 73 FADDNKQSA--IDNFNNNRRRRNNFNQGRKRLSGRA-----FRAQREDSVRRT----VYV 121
+D ++ +D + ++ + +K+ A F A+R + + + +Y+
Sbjct: 269 TPEDASKAVEELDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYI 328
Query: 122 SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTM 179
+++ +E L LF G + CRV D V R AFV F+ E RA L G M
Sbjct: 329 KNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKM 388
Query: 180 LGYYPVRV 187
+G P+ V
Sbjct: 389 VGAKPLYV 396
>gi|355745275|gb|EHH49900.1| hypothetical protein EGM_00635 [Macaca fascicularis]
Length = 289
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118
Query: 171 AALN-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 119 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 161
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 162 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 219
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 220 EPITVKFANNP 230
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG 216
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A+ A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAV---AESAILAL 272
NID+ + E + FE GE+T L D S FV F A +A+ AL
Sbjct: 240 VKNIDQDTTEEEFRDLFEKF--GEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 273 N 273
N
Sbjct: 298 N 298
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILA-LNCSGMVLG 280
E G +T +L+ D S R FV + +SA+ A + G LG
Sbjct: 224 EPY--GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|357519763|ref|XP_003630170.1| RNA-binding protein [Medicago truncatula]
gi|355524192|gb|AET04646.1| RNA-binding protein [Medicago truncatula]
Length = 567
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 13/197 (6%)
Query: 104 GRAFRAQRE--------DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS- 154
GR FR ++E + +RTV+ + TE + FS G+V D R+ D +S
Sbjct: 181 GRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 240
Query: 155 -VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA--ILPVNPTFLPRSEDEREM 211
++EF D A+ L G +L PV V PS+ ++ N +
Sbjct: 241 RSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGA 300
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
R +Y N+ + +A +++ FE EV +L L + H FV+FA E A A
Sbjct: 301 VDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA 360
Query: 272 LNCSG-MVLGSQPIRVS 287
+ +G + + + I+VS
Sbjct: 361 QSLNGKLEIAGRTIKVS 377
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFV 260
P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S + ++
Sbjct: 193 PEADPERD--QRTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYI 248
Query: 261 EFAVAESAILALNCSGMVLGSQPIRVSPSK 290
EF A S +A+ SG +L QP+ V PS+
Sbjct: 249 EFYDAMSVPMAIALSGQLLLGQPVMVKPSE 278
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG 216
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A+ A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAV---AESAILAL 272
NID+ + E + FE GE+T L D S FV F A +A+ AL
Sbjct: 240 VKNIDQDTTEEEFRDLFEKF--GEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 273 N 273
N
Sbjct: 298 N 298
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+ Q++TE L +F+S G V RVC D + L +A+V + A +
Sbjct: 81 VSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERS 140
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T++ P R++ + R R+ + ++ N+DK + +
Sbjct: 141 LDTLNYTVIKGQPCRIM------------WCHRDPSLRKSGNGNIFVKNLDKNIDNKALY 188
Query: 232 QFFEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F + G + ++ + D+ HS FV + ESA A++ +GM++G + + V P
Sbjct: 189 DTF--SLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGP 245
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+++++TE L +F++ G V RVC D L +A+V + + A AL+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD- 75
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +P+ R+ + ++ N+DK + + K F+
Sbjct: 76 ---TLNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKSI---DNKALFD 122
Query: 236 A-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G + ++ D S FV + ESA A+ +G+ LGS+ + V P
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
>gi|148235423|ref|NP_001081035.1| ELAV-like protein 2 [Xenopus laevis]
gi|288561905|sp|Q91903.2|ELAV2_XENLA RecName: Full=ELAV-like protein 2; AltName: Full=Elav like-1;
Short=Xel-1; AltName: Full=Protein ElrB; AltName:
Full=p45
gi|608539|gb|AAA96943.1| ribonucleoprotein [Xenopus laevis]
Length = 389
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQ 166
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
E++Q F G + R+L D V S + F+ F AE AI LN ++
Sbjct: 167 KELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 224
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 225 PITVKFANNP 234
>gi|345491945|ref|XP_001599982.2| PREDICTED: nucleolar protein 12-like [Nasonia vitripennis]
Length = 613
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 39/192 (20%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-------------------DPHSVLR 157
RT+YV ++ + +T + + LF G++ RV G P
Sbjct: 332 RTIYVGNVPKEMTVKTIKKLFRPFGEIDSIRVRGVVAEDSRMSAKVATITKKMHPKVSTV 391
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTV 216
+ +V F +E A+ AL L G LG +RV L +K + D++ R V
Sbjct: 392 YVYVAFKEEQSAKDALKLNGHKLGENTLRVDLSTKN-----------KDHDQK----RAV 436
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAVAESAILALNC 274
+ NI + + EV++ F+ +C G++ +R++ D S I +V F +S LAL
Sbjct: 437 FLGNIPFDITEDEVRKHFD-SC-GKIESVRIVKDRKSGLSRGIGYVNFENQDSVTLALEL 494
Query: 275 SGMVLGSQPIRV 286
+G L ++ IRV
Sbjct: 495 NGTNLKNREIRV 506
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+R V++ +I +ITE+ + F SCG++ R+ D S L +V F ++ AL
Sbjct: 433 KRAVFLGNIPFDITEDEVRKHFDSCGKIESVRIVKDRKSGLSRGIGYVNFENQDSVTLAL 492
Query: 174 NLGGTMLGYYPVRV 187
L GT L +RV
Sbjct: 493 ELNGTNLKNREIRV 506
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLG 176
+YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALE-- 101
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
ML + PV P + + R R+ + ++ N+DK + + F A
Sbjct: 102 --MLNFTPVNGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSA 152
Query: 237 ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
G + ++ + ++ FV++ ESA A+N +GM+L + + V P
Sbjct: 153 F--GNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGP 204
>gi|255550678|ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
gi|223544486|gb|EEF46005.1| splicing factor, putative [Ricinus communis]
Length = 609
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+RTV+ I E + FS G+V D R+ D +S ++EF D A+
Sbjct: 225 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 284
Query: 174 NLGGTMLGYYPVRVLPSKT------AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
L G L PV V PS+ + VN P S +R +Y N+ + +
Sbjct: 285 ALSGQPLLGQPVMVKPSEAEKNLVQSTTTVNAGSGPYS-----GGARRLYVGNLHFNITE 339
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMV-LGSQPIRV 286
+++Q FE E+ +L L + H FV+FA E A ALN +G V + +PI+V
Sbjct: 340 DQLRQVFEPFGIVELVQLPL-DETGHCKGFGFVQFARLEDAKNALNLNGQVEIAGRPIKV 398
Query: 287 S 287
S
Sbjct: 399 S 399
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILA 271
RTV+ I K + +V +FF A G+V +RL+ D S + ++EF S +A
Sbjct: 226 RTVFAYQICLKADERDVYEFFSRA--GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 283
Query: 272 LNCSGMVLGSQPIRVSPSK 290
+ SG L QP+ V PS+
Sbjct: 284 IALSGQPLLGQPVMVKPSE 302
>gi|390465924|ref|XP_002750851.2| PREDICTED: ELAV-like protein 4 isoform 1 [Callithrix jacchus]
Length = 366
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|328715704|ref|XP_001946343.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1
[Acyrthosiphon pisum]
Length = 419
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEF---ADEHGARAAL 173
++V D+ I + L F+ G++ DCRV DP ++ + FV F A+ A AA+
Sbjct: 97 IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAEAESAIAAM 156
Query: 174 NLGGTMLGYYPVRV--LPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQ 227
N G LG +R K L + P + DE S TVYC + +
Sbjct: 157 N--GQWLGSRSIRTNWATRKPPTLKTDSNTKPLTFDEVYNQSSPTNCTVYCGGLTSGLTD 214
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAES---AILALNCSGMVLGSQPI 284
V++ F A G + +R+ D + AFV FA ES AI+A++ S + QP+
Sbjct: 215 ELVQKTF--APFGNIQEIRVFKDKGY----AFVRFATKESATHAIVAVHNSD--INGQPV 266
Query: 285 RVSPSKTPVRPRVTR 299
+ S K P V++
Sbjct: 267 KCSWGKESGEPIVSQ 281
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ C+V D +
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 128 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 176
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFA 263
+ VY N + ++ FE G +T +++ S+R +AF +
Sbjct: 177 EKAKLFTNVYVKNFGEDFSDEMLRDMFEKY--GRITSHKVMYKEDGSSRGFGFVAFEDPD 234
Query: 264 VAESAILALNCSGMVLGSQPIRV 286
AE A L LN +V G +P+ V
Sbjct: 235 AAERACLELNGKELVEG-KPLYV 256
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 63 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKAIDNKAMYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D +++ FV F E+A ++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 162
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE- 98
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + P+ P + + R R+ + ++ N+DK + + F
Sbjct: 99 ---MLNFTPINGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTF- 147
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ G + ++ + ++ FV+F + E+A A++ +GM+L + + V P
Sbjct: 148 -SVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGP 201
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVC--GDPHSVLRFAFVEFAD-EHGARAALNL 175
VYV ++ ++ TE+ L +F G + V GD S F FV F + + ARA +L
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRC-FGFVNFENPDDAARAVEDL 278
Query: 176 GGTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAE-V 230
G +Y R + + F ++ + T +Y N+D + E +
Sbjct: 279 NGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKL 338
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
K+ F A G +T +++ D + S FV F AE A AL +G ++GS+P+ V+
Sbjct: 339 KEIF--ADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+ +++TE L +F++ G V+ RVC D L +A+V + + A AL+
Sbjct: 17 SLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALD- 75
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +P+ R+ + ++ N+DK + + K F+
Sbjct: 76 ---TLNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKTI---DNKALFD 122
Query: 236 A-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
+ G + ++ D S FV + ESA A+ +GM LGS+ + V
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
>gi|390465918|ref|XP_003733489.1| PREDICTED: ELAV-like protein 4 isoform 2 [Callithrix jacchus]
gi|403258117|ref|XP_003921625.1| PREDICTED: ELAV-like protein 4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 371
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|299743563|ref|XP_001835851.2| RNA-binding protein Prp24 [Coprinopsis cinerea okayama7#130]
gi|298405712|gb|EAU85916.2| RNA-binding protein Prp24 [Coprinopsis cinerea okayama7#130]
Length = 1042
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 55/259 (21%)
Query: 87 NNRRRRNNFNQGRKRLSGRA-FR----AQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
++++RR + ++ S RA F A + D TV+V+D+ + +TE+ L LF CG
Sbjct: 633 DSKKRRTDEDEPSGETSKRARFETNPPALKRDRENTTVFVADLPEQVTEDELKSLFKDCG 692
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-----LGGTMLGY---YPVRVLPSKT- 192
+ + ++ P++V+ A VEF + AAL L G + Y + VR PSK
Sbjct: 693 SIREVKITKLPNAVV--ALVEFFERDSVPAALTKDKKRLQGQEISYGMLFDVR-WPSKKF 749
Query: 193 -------------------AI----------LPVNPTFLPRSEDEREMC-----SRTVYC 218
A+ LP+N ++ E ++E R VY
Sbjct: 750 KTTRRFCYVQFTSPDAAQQALELHRKELEPNLPLN-VYISNPERKKERTDHDANEREVYV 808
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGM 277
+ K +A++++ F A G+V +R+ + H+ AFVE+ + A AL+ +
Sbjct: 809 AGLSKFTTKADLEKLF--ATYGKVKDVRMATEQDGHARGYAFVEYEEPQDARRALDANNY 866
Query: 278 VLGSQPIRVSPSKTPVRPR 296
L + I V+ + VR R
Sbjct: 867 ELKKRRIAVTLADPRVRAR 885
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
D+ R VYV+ + + T+ L LF++ G+V D R+ + R +AFVE+ + AR
Sbjct: 800 DANEREVYVAGLSKFTTKADLEKLFATYGKVKDVRMATEQDGHARGYAFVEYEEPQDARR 859
Query: 172 ALNLGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
AL+ L + V P A + T L R+ E+ SR++ N+ +
Sbjct: 860 ALDANNYELKKRRIAVTLADPRVRARHNKSETGLGRNA---EIRSRSIRVRNLPPNTQEG 916
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF-AVAESAILALNCSGMVLGSQPIRVS 287
++Q FE V R+ + D R A VE AE+ L L +V +++S
Sbjct: 917 LLQQTFEKVAA--VRRVEVFADK----REAAVELETAAEAGKLLLRTEPLVFNDVILQLS 970
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 169 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 160 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 212
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE--DEREMCSRTVY 217
FV + A A+ ML L K + + + R DE + +Y
Sbjct: 183 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID V + E ++ FE GE+T L D +R FV ++ ESA A++
Sbjct: 236 IKNIDPDVTEEEFRKIFEQF--GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
>gi|395730528|ref|XP_003775743.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 366
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|427798071|gb|JAA64487.1| Putative splicing factor arginine/serine-rich, partial
[Rhipicephalus pulchellus]
Length = 381
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRTVYV ++D + T E+L FS G+V R+ G RFAFVEF ++ A
Sbjct: 71 EEIRRTVYVGNLDSSATTEQLLKFFSQMGEVKYVRMAGGESQPTRFAFVEFTEQSSVGRA 130
Query: 173 LNLGG 177
L G
Sbjct: 131 LQFNG 135
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E RTVY N+D ++ +FF GEV +R+ G TR AFVEF S
Sbjct: 71 EEIRRTVYVGNLDSSATTEQLLKFFSQM--GEVKYVRMAGGESQPTRFAFVEFTEQSSVG 128
Query: 270 LALNCSGM 277
AL +G+
Sbjct: 129 RALQFNGI 136
>gi|221316773|ref|NP_001138249.1| ELAV-like protein 4 isoform 5 [Homo sapiens]
gi|114556458|ref|XP_001135525.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 9 [Pan troglodytes]
gi|332219805|ref|XP_003259048.1| PREDICTED: ELAV-like protein 4 isoform 3 [Nomascus leucogenys]
gi|397518908|ref|XP_003829617.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pan paniscus]
gi|402854507|ref|XP_003891909.1| PREDICTED: ELAV-like protein 4 isoform 3 [Papio anubis]
gi|426329577|ref|XP_004025815.1| PREDICTED: ELAV-like protein 4 isoform 3 [Gorilla gorilla gorilla]
gi|119627250|gb|EAX06845.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_e [Homo sapiens]
gi|221041752|dbj|BAH12553.1| unnamed protein product [Homo sapiens]
Length = 369
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 104
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 105 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 150
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 151 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 208
Query: 285 RVSPSKTP 292
V + P
Sbjct: 209 TVKFANNP 216
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 215
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 126 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 185
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 186 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
N+D ++ E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 239 IKNLDSEIDDDEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>gi|114556468|ref|XP_001135779.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 12 [Pan troglodytes]
gi|332219801|ref|XP_003259046.1| PREDICTED: ELAV-like protein 4 isoform 1 [Nomascus leucogenys]
gi|395855041|ref|XP_003799980.1| PREDICTED: ELAV-like protein 4 isoform 3 [Otolemur garnettii]
gi|397518902|ref|XP_003829614.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pan paniscus]
gi|402854503|ref|XP_003891907.1| PREDICTED: ELAV-like protein 4 isoform 1 [Papio anubis]
gi|426329573|ref|XP_004025813.1| PREDICTED: ELAV-like protein 4 isoform 1 [Gorilla gorilla gorilla]
gi|221042444|dbj|BAH12899.1| unnamed protein product [Homo sapiens]
gi|261860582|dbj|BAI46813.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 4
[synthetic construct]
Length = 371
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|221316771|ref|NP_001138248.1| ELAV-like protein 4 isoform 4 [Homo sapiens]
gi|114556460|ref|XP_001135439.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 8 [Pan troglodytes]
gi|332219809|ref|XP_003259050.1| PREDICTED: ELAV-like protein 4 isoform 5 [Nomascus leucogenys]
gi|395855043|ref|XP_003799981.1| PREDICTED: ELAV-like protein 4 isoform 4 [Otolemur garnettii]
gi|397518910|ref|XP_003829618.1| PREDICTED: ELAV-like protein 4 isoform 5 [Pan paniscus]
gi|402854511|ref|XP_003891911.1| PREDICTED: ELAV-like protein 4 isoform 5 [Papio anubis]
gi|426329581|ref|XP_004025817.1| PREDICTED: ELAV-like protein 4 isoform 5 [Gorilla gorilla gorilla]
gi|14280323|gb|AAK57538.1| HUD3 [Homo sapiens]
Length = 366
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 111 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 158
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 159 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 211
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 122 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 181
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 182 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 234
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALN 273
NID +V E ++ F G++T + D +R + +V+ A++A+ LN
Sbjct: 235 VKNIDPEVTDEEFRELF--GKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLN 292
>gi|357121988|ref|XP_003562698.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 427
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 43/212 (20%)
Query: 109 AQREDSVRR-TVYVSDIDQNITEERLAGLFS----SCGQVVDCRVCGDPHSVLR--FAFV 161
QRED+ ++V D+ +T+ L FS SC D RV D + + FV
Sbjct: 138 GQREDTTDHFNIFVGDLSAEVTDSALFAFFSGYSSSCS---DARVMWDQKTGRSRGYGFV 194
Query: 162 EFADEHGARAALN-LGGTMLGYYPVRV-LPSKTA-------------ILPVNPTFLPRSE 206
F ++ A++A+N L G LG +R +K A I V F +E
Sbjct: 195 SFRNQQDAQSAINDLNGQWLGNRQIRCNWATKGANSVEDQQTSDSKSIAGVTNNF---TE 251
Query: 207 DEREMCS----------RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR 256
D +E + RTVY N+ + Q + +FF A G + +R+ H
Sbjct: 252 DGKEKANEDAPENNPLYRTVYVGNLAHEATQDVLHRFFYALGAGAIEEVRV----QHGKG 307
Query: 257 IAFVEFAVAESAILALNCS-GMVLGSQPIRVS 287
FV+++ A LA+ G +LG +PI+ S
Sbjct: 308 FGFVKYSSHAEAALAIQMGNGCILGGKPIKCS 339
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE-HGARAA 172
S R+VYV +I ++TE L +F S G V C++ S + FV++ + A A
Sbjct: 59 STCRSVYVGNIHVHVTEAVLREVFQSTGSVEGCKLIRKEKS--SYGFVDYYERGSAALAI 116
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVYCTNIDKKVPQAEV 230
L L G + P+R VN + + +RE + ++ ++ +V + +
Sbjct: 117 LQLNGRQIFGQPIR----------VNWAY---ASGQREDTTDHFNIFVGDLSAEVTDSAL 163
Query: 231 KQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285
FF + + R++ D S FV F + A A+N +G LG++ IR
Sbjct: 164 FAFF-SGYSSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNRQIR 220
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG 215
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 126 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 185
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A+ A+ ML L K + + R EM + VY
Sbjct: 186 FVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 238
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN 273
NID+ E ++ FE GE+T L D S FV F ESA A++
Sbjct: 239 VKNIDQDTTDEEFRELFEKF--GEITSATLARDSESGKSRGFGFVNFTSHESAAAAVD 294
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
E+ +RTV+ + +NI L FS GQV D R+ D +S A++EF D+
Sbjct: 114 EEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAV 173
Query: 170 RAALNLGGTMLGYYPVRVLPSKTA-----------ILPVNPTFLPRSEDEREMCSRTVYC 218
A+ L G L P+ V+ ++ P+ PT L Y
Sbjct: 174 PLAIGLSGQKLLGAPIMVMLTQAEKNRLAAEAERLKQPLGPTRL--------------YV 219
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILAL-NCS 275
++ + +A VK FE G V ++L+ D S FV+F AE+A A+ +
Sbjct: 220 GSLHFNITEAMVKAVFEPF--GTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMN 277
Query: 276 GMVLGSQPIRVSP 288
G L +P+++ P
Sbjct: 278 GFELAGRPLKIGP 290
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFA 263
E E RTV+C + + + ++++FF G+V+ +R++ D S IA++EF
Sbjct: 111 ESAEEKDQRTVFCMQLARNIRPRDLEEFFSKV--GQVSDVRIISDRNSRRSKGIAYIEFT 168
Query: 264 VAESAILALNCSGMVLGSQPIRV 286
+ LA+ SG L PI V
Sbjct: 169 DKSAVPLAIGLSGQKLLGAPIMV 191
>gi|297664975|ref|XP_002810888.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pongo abelii]
Length = 369
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 104
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 105 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 150
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 151 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 208
Query: 285 RVSPSKTP 292
V + P
Sbjct: 209 TVKFANNP 216
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Query: 109 AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFA 164
+QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D H + FV F
Sbjct: 3 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSRGYGFVHFE 62
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-----VYCT 219
E AR A+ ML L K + F+ R E +M + VY
Sbjct: 63 TEEAARNAIEKVNGML-------LNGKKVFV---GRFMNRRERLEQMGDKMKKFNNVYIK 112
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALN 273
N +++ ++K +FE G++ +++ + R +++ E AE A+ +N
Sbjct: 113 NFSEEIDDEKLKIWFETF--GKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMN 168
>gi|73977009|ref|XP_532585.2| PREDICTED: ELAV-like protein 4 isoform 1 [Canis lupus familiaris]
gi|291398932|ref|XP_002715154.1| PREDICTED: ELAV-like 4-like isoform 5 [Oryctolagus cuniculus]
gi|426215486|ref|XP_004002003.1| PREDICTED: ELAV-like protein 4 isoform 3 [Ovis aries]
Length = 366
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|254281262|ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]
gi|73977013|ref|XP_860413.1| PREDICTED: ELAV-like protein 4 isoform 17 [Canis lupus familiaris]
gi|291398928|ref|XP_002715152.1| PREDICTED: ELAV-like 4-like isoform 3 [Oryctolagus cuniculus]
gi|354468152|ref|XP_003496531.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cricetulus griseus]
gi|426215484|ref|XP_004002002.1| PREDICTED: ELAV-like protein 4 isoform 2 [Ovis aries]
Length = 371
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 160
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 161 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
N+D ++ E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 237 IKNLDSEIDDDEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 290
>gi|303286577|ref|XP_003062578.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456095|gb|EEH53397.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 235
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 108 RAQREDSVRRTVYVSDI----DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
RA ++ + RTV+V I + ITE +A FS G VV RV H+ R A+VEF
Sbjct: 3 RASDQEKISRTVHVGGIRGLDNGEITERDVAEFFSQQGPVVAVRV----HA--RSAWVEF 56
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
AD+ AALNL G G + +RV SKTAI
Sbjct: 57 ADDASTMAALNLDGVTTGGHNLRVNRSKTAI 87
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 202 LPRSEDEREMCSRTVYCTNI----DKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRI 257
+ R+ D+ E SRTV+ I + ++ + +V +FF G V +R VH+ R
Sbjct: 1 MSRASDQ-EKISRTVHVGGIRGLDNGEITERDVAEFFSQQ--GPVVAVR-----VHA-RS 51
Query: 258 AFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV 293
A+VEFA S + ALN G+ G +RV+ SKT +
Sbjct: 52 AWVEFADDASTMAALNLDGVTTGGHNLRVNRSKTAI 87
>gi|348677689|gb|EGZ17506.1| hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae]
Length = 293
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEHGARAA 172
TVYV I E L FSSCG V + R+ G P +A V F DE + A
Sbjct: 69 TVYVEGIPYRANEGDLVTHFSSCGTVREVRMPRYQDSGKPRG---YAHVVFDDEAALKKA 125
Query: 173 LNLGGTML--GYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L L G L Y +R + A+ + + ++ + C RTV+ + +V +
Sbjct: 126 LKLDGQYLFNRYLSIRRAEAPRAVEMALKEKNQNTTKKAVKGC-RTVFIKQLPYEVEEGT 184
Query: 230 VKQFFEAACGGEVTRLRL-LGDHVHSTR-IAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
+++ A+C G +T +RL + +H + +VEF+ + A+ A SGM +G + + +S
Sbjct: 185 IREAL-ASC-GTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSGMKIGDRMVLIS 242
>gi|297664979|ref|XP_002810890.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pongo abelii]
Length = 371
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|326925350|ref|XP_003208879.1| PREDICTED: ELAV-like protein 4-like [Meleagris gallopavo]
Length = 379
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 55 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 114
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 115 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 160
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 161 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 218
Query: 285 RVSPSKTP 292
V + P
Sbjct: 219 TVKFANNP 226
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
+F + ++ RT+YV ++D +TE+ + LFS GQ+ C++ +P S + FVEF +
Sbjct: 2 SFPSPQDGGQPRTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSD-PYCFVEFVN 60
Query: 166 EHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK 224
A +A+ + M +RV + +AI P R + + ++ ++ +
Sbjct: 61 HSDASSAITAMNARMCLGRELRVNWASSAIQQQTPH---RPDTSKH---HHIFVGDLSPQ 114
Query: 225 VPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFA---VAESAILALNCSGMVL 279
+ +++++ F GE++ R++ D S FV F AE+AI ++ G L
Sbjct: 115 IETSDLREAFSPF--GEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMD--GSWL 170
Query: 280 GSQPIRV 286
GS+ IR
Sbjct: 171 GSRAIRT 177
>gi|119627248|gb|EAX06843.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Homo sapiens]
Length = 356
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 104
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 105 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 150
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 151 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 208
Query: 285 RVSPSKTP 292
V + P
Sbjct: 209 TVKFANNP 216
>gi|2801552|gb|AAC40080.1| RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|348554579|ref|XP_003463103.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cavia porcellus]
Length = 347
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 137
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 138 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 195
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 196 EPITVKFANNP 206
>gi|119627249|gb|EAX06844.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_d [Homo sapiens]
Length = 365
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 41 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 100
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 101 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 146
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 147 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 204
Query: 285 RVSPSKTP 292
V + P
Sbjct: 205 TVKFANNP 212
>gi|390465920|ref|XP_003733490.1| PREDICTED: ELAV-like protein 4 isoform 3 [Callithrix jacchus]
gi|403258119|ref|XP_003921626.1| PREDICTED: ELAV-like protein 4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|254281259|ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]
Length = 356
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 104
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 105 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 150
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 151 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 208
Query: 285 RVSPSKTP 292
V + P
Sbjct: 209 TVKFANNP 216
>gi|86170621|ref|XP_966051.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|46362293|emb|CAG25231.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 582
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 79/219 (36%), Gaps = 50/219 (22%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
S+ VYV ++ +ITEE + F SC +++ P ++ +EF G A
Sbjct: 6 SIANVVYVKNLSSDITEENIREKFGSCDEIISITFKNFPGLNQKYCQIEFKTSEGITNAS 65
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER------------------------ 209
L G L P+ V + I N + L +E ++
Sbjct: 66 RLNGESLLNVPMVVSVIEPIINNTNLSELSTTECDKNVNSLLDVRNSITNQGVQTLLLQK 125
Query: 210 ------------------------EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL 245
++ S+ VY NI +K + ++K FF+ G T
Sbjct: 126 QVISEQKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNV--GNTTSY 183
Query: 246 RLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPI 284
+L + AFVEF E A ALN SG +G I
Sbjct: 184 KLQYNEQKKVHTAFVEFKNEEHAKAALNLSGTKVGLHEI 222
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D + VY+ +I + EE + F + G ++ + + AFVEF +E A+AA
Sbjct: 150 DVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQYNEQKKVHTAFVEFKNEEHAKAA 209
Query: 173 LNLGGTMLGYYPV 185
LNL GT +G + +
Sbjct: 210 LNLSGTKVGLHEI 222
>gi|221316769|ref|NP_001138247.1| ELAV-like protein 4 isoform 3 [Homo sapiens]
gi|14280325|gb|AAK57539.1| HUD4 [Homo sapiens]
Length = 383
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 119 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 164
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 165 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 222
Query: 285 RVSPSKTP 292
V + P
Sbjct: 223 TVKFANNP 230
>gi|338721769|ref|XP_003364429.1| PREDICTED: ELAV-like protein 4 [Equus caballus]
Length = 371
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|297664981|ref|XP_002810891.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pongo abelii]
Length = 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|345780791|ref|XP_859879.2| PREDICTED: ELAV-like protein 4 isoform 4 [Canis lupus familiaris]
Length = 364
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 100 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 145
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 146 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 203
Query: 285 RVSPSKTP 292
V + P
Sbjct: 204 TVKFANNP 211
>gi|221316767|ref|NP_001138246.1| ELAV-like protein 4 isoform 2 [Homo sapiens]
gi|384475927|ref|NP_001245109.1| ELAV-like protein 4 [Macaca mulatta]
gi|114556464|ref|XP_001135692.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 11 [Pan troglodytes]
gi|332219803|ref|XP_003259047.1| PREDICTED: ELAV-like protein 4 isoform 2 [Nomascus leucogenys]
gi|395855037|ref|XP_003799978.1| PREDICTED: ELAV-like protein 4 isoform 1 [Otolemur garnettii]
gi|397518904|ref|XP_003829615.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pan paniscus]
gi|402854505|ref|XP_003891908.1| PREDICTED: ELAV-like protein 4 isoform 2 [Papio anubis]
gi|426329575|ref|XP_004025814.1| PREDICTED: ELAV-like protein 4 isoform 2 [Gorilla gorilla gorilla]
gi|14280327|gb|AAK57540.1| HUD1 [Homo sapiens]
gi|380810346|gb|AFE77048.1| ELAV-like protein 4 isoform 2 [Macaca mulatta]
Length = 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L 175
+YV D+ +++ EE L FS G V RVC D + LR+ +V + A AL+ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+++ P+RV+ S R D R ++ N++ V A +++ F
Sbjct: 104 NHSLVLDKPIRVMWSN------------RDPDARRSGVGNIFVKNLNNSVDNASLQELFS 151
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
G+V ++ + ++R FV+FA ESA A+ N +G + + + V+
Sbjct: 152 KF--GDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVA 203
>gi|395855039|ref|XP_003799979.1| PREDICTED: ELAV-like protein 4 isoform 2 [Otolemur garnettii]
Length = 383
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 119 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 164
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 165 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 222
Query: 285 RVSPSKTP 292
V + P
Sbjct: 223 TVKFANNP 230
>gi|348554577|ref|XP_003463102.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cavia porcellus]
gi|354468154|ref|XP_003496532.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cricetulus griseus]
Length = 383
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 119 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 164
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 165 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 222
Query: 285 RVSPSKTP 292
V + P
Sbjct: 223 TVKFANNP 230
>gi|344241813|gb|EGV97916.1| ELAV-like protein 4 [Cricetulus griseus]
gi|431896875|gb|ELK06139.1| ELAV-like protein 4, partial [Pteropus alecto]
Length = 350
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 39 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 98
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 99 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 144
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 145 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 202
Query: 285 RVSPSKTP 292
V + P
Sbjct: 203 TVKFANNP 210
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 111 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 158
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 159 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 211
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 122 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 181
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 182 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 234
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALN 273
NID +V E ++ F G++T + D +R + +V+ A+SA+ LN
Sbjct: 235 VKNIDPEVTDEEFRELFGKY--GDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELN 292
>gi|125991914|ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus]
gi|73976985|ref|XP_859918.1| PREDICTED: ELAV-like protein 4 isoform 5 [Canis lupus familiaris]
gi|291398926|ref|XP_002715151.1| PREDICTED: ELAV-like 4-like isoform 2 [Oryctolagus cuniculus]
gi|301772324|ref|XP_002921582.1| PREDICTED: ELAV-like protein 4-like [Ailuropoda melanoleuca]
gi|426215482|ref|XP_004002001.1| PREDICTED: ELAV-like protein 4 isoform 1 [Ovis aries]
gi|124829171|gb|AAI33284.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Bos taurus]
gi|296489084|tpg|DAA31197.1| TPA: ELAV-like 4 [Bos taurus]
Length = 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|344278909|ref|XP_003411234.1| PREDICTED: ELAV-like protein 4-like [Loxodonta africana]
Length = 419
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 95 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 154
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 155 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 197
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 198 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 255
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 256 EPITVKFANNP 266
>gi|149693653|ref|XP_001492549.1| PREDICTED: ELAV-like protein 4 isoform 3 [Equus caballus]
Length = 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+D +++E L +FS G V RVC D + L +A+V F D + A+
Sbjct: 41 SLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIE- 99
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P R+ S ++ N+ + + F
Sbjct: 100 ---KLNYTPIKGRLCRIMWSQRDPAL-------RKKGSANIFIKNLHSDIDNKALYDTF- 148
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQPIRVSP 288
+ G + ++ D ++ FV F A+ AI ALN GM+L Q I V P
Sbjct: 149 -SVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALN--GMLLNGQEIFVGP 202
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+ +++TE L +F++ G V+ RVC D L +A+V + + A AL+
Sbjct: 17 SLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALD- 75
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +P+ R+ + ++ N+DK + + K F+
Sbjct: 76 ---TLNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKTI---DNKALFD 122
Query: 236 A-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
+ G + ++ D S FV + ESA A+ +GM LGS+ + V
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 120 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP-SKTAILPVNPTFLPRSEDEREMCSRTVY 217
FV F + A AA+ L G +G V V P KTA D VY
Sbjct: 180 FVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTA----------ERNDGTPKNFTNVY 229
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
+I + ++K+ F A GE+T L + D R AFV +A E A A+
Sbjct: 230 IKHIPASWNEEKIKEEFGAF--GEITSLAVQTDP-KGRRFAFVNYAEFEQARAAV 281
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 15/176 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++Y D+ ++TE L +F++ G V RVC D L +A++ F + A AL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD- 107
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ P + +P R + VY N+D+ + + F
Sbjct: 108 ---TLNYSPIKGRPCRLMWSHRDPAL-------RRSGAGNVYVKNLDRNIDNKALYDTFS 157
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
++ L D S FV F ESA A+ +GM +G + + V+P K
Sbjct: 158 LFGNILSCKVALTPDG-KSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFK 212
>gi|224058156|ref|XP_002196701.1| PREDICTED: ELAV-like protein 4 [Taeniopygia guttata]
Length = 371
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|45382273|ref|NP_990161.1| ELAV-like protein 4 [Gallus gallus]
gi|5739519|gb|AAD50508.1|AF176675_1 RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|71051886|gb|AAH99348.1| ElrD protein, partial [Xenopus laevis]
Length = 360
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 36 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 95
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 96 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 141
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 142 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPI 199
Query: 285 RVSPSKTP 292
V + P
Sbjct: 200 TVKFANNP 207
>gi|334321530|ref|XP_001373647.2| PREDICTED: ELAV-like protein 4 isoform 1 [Monodelphis domestica]
Length = 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 215
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 126 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 185
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 186 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
N+D ++ E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 239 IKNLDSEIDDDEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA
Sbjct: 52 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEE 111
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 112 LNYTLIKGRPCRIMWSQ------------RDPALRKTGHGNVFIKNLDIAIDNKALHDTF 159
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D + +S FV + AE+A A+ + +GM+L + + V
Sbjct: 160 --AAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYV 211
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + + +
Sbjct: 123 RIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 182
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE-----DEREMCS 213
FV + A A+ ++ G +L V V +P+ E DE +
Sbjct: 183 FVHYETAEAATNAIKHVNGMLLNEKKVYVG-----------HHIPKKERQSKFDEMKANF 231
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL--GDHVHSTRIAFVEFAVAE 266
VY NID +V E + FE G++T L GD S FV F+ E
Sbjct: 232 TNVYVKNIDPEVSDDEFRTLFENF--GQITSASLARDGDSGTSRGFGFVNFSSHE 284
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 32/203 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 128 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYV-----------GRFIPRKEREKELG 176
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL-GDHVHSTRIAFVEFA--- 263
+ VY N + +K FE G +T +++ D +S FV F
Sbjct: 177 EKAKLFTNVYVKNFGEDFSDEMLKDMFEKY--GRITSHKVMYKDDGNSRGFGFVAFEDPD 234
Query: 264 VAESAILALNCSGMVLGSQPIRV 286
AE A + LN +V G +P+ V
Sbjct: 235 AAERACIELNGKELVEG-KPLYV 256
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 63 MNFDIIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALFDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D +++ FV F E+A ++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYV 162
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 120 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP-SKTAILPVNPTFLPRSEDEREMCSRTVY 217
FV F + A AA+ L G +G V V P KTA D VY
Sbjct: 180 FVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTA----------ERNDGTPKNFTNVY 229
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
+I + ++K+ F A GE+T L + D R AFV +A E A A+
Sbjct: 230 IKHIPASWNEEKIKEEFGAF--GEITSLAVQTDP-KGRRFAFVNYAEFEQARAAV 281
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 15/176 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++Y D+ ++TE L +F++ G V RVC D L +A++ F + A AL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD- 107
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ P + +P R + VY N+D+ + + F
Sbjct: 108 ---TLNYSPIKGRPCRLMWSHRDPAL-------RRSGAGNVYVKNLDRNIDNKALYDTFS 157
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
++ L D S FV F ESA A+ +GM +G + + V+P K
Sbjct: 158 LFGNILSCKVALTPDG-KSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFK 212
>gi|326929748|ref|XP_003211018.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Meleagris gallopavo]
Length = 899
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 118 TVYVSDIDQNIT--EERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
TV+VS++ N+T E +L LF SCG+V R R + +VEF DE A AL
Sbjct: 641 TVFVSNLSYNMTDPEVKLKELFESCGEVAQIRPVFSNKGTFRGYCYVEFKDEKSALQALG 700
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK------VPQA 228
L ++ P+ V P NP F Y T ++K +P +
Sbjct: 701 LDRNVVEGRPMFVSPCVDK--NKNPDF-----------KVFRYSTTLEKHKLFISGLPFS 747
Query: 229 EVKQFFEAACG--GEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQ 282
K+ E C G V +RL+ + + +A+VEF A A A+L ++ G+ +
Sbjct: 748 CTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEFENEAQASQAVLKMD--GLTIKEH 805
Query: 283 PIRVSPSKTPVR 294
I+V+ S P+R
Sbjct: 806 VIKVAISNPPLR 817
>gi|194207476|ref|XP_001492529.2| PREDICTED: ELAV-like protein 4 isoform 2 [Equus caballus]
Length = 383
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 119 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 164
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 165 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 222
Query: 285 RVSPSKTP 292
V + P
Sbjct: 223 TVKFANNP 230
>gi|334321532|ref|XP_003340124.1| PREDICTED: ELAV-like protein 4 isoform 2 [Monodelphis domestica]
Length = 347
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|149693651|ref|XP_001492503.1| PREDICTED: ELAV-like protein 4 isoform 1 [Equus caballus]
Length = 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 158 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 181 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID+ V + E ++ FE GE+T L D +R FV F+ ESA A++
Sbjct: 234 IKNIDQDVTEEEFRELFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 109 AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF 163
+ R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F FV F
Sbjct: 3 SHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHF 62
Query: 164 ADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
+ A AA+ L G +G V V P K + T P++ VY +I
Sbjct: 63 ESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGT--PKN-------FTNVYIKHIP 113
Query: 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
+ ++K+ F A GE+T L + D R AFV +A E A A+
Sbjct: 114 ASWNEEKIKEEFGAF--GEITSLAVQTD-PKGRRFAFVNYAEFEQARAAV 160
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D N+TE +L +FS G V RVC D + L +A+V F + A AL+
Sbjct: 25 SLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALD- 83
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ + +P+ R+ + ++ N+DK V + F
Sbjct: 84 ---TLNYTQIKGKACRIMWKHRDPSI-------RKSGAGNIFIKNLDKTVDTRTLHDTFS 133
Query: 236 AACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
G + ++ + +H +S FV+F AE A A++ +GM+L + + V P
Sbjct: 134 QF--GNILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGP 186
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVEFAD-EHGARAALN 174
+Y+ ++D I +E+L F G + +V D P F FV FA E RA
Sbjct: 310 LYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTA 369
Query: 175 LGGTMLGYYPVRV 187
+ G M+G P+ V
Sbjct: 370 MNGQMVGTKPIYV 382
>gi|308809515|ref|XP_003082067.1| RNA recognition motif (ISS) [Ostreococcus tauri]
gi|116060534|emb|CAL55870.1| RNA recognition motif (ISS) [Ostreococcus tauri]
Length = 412
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRT +VS+ +T E++ LFS CG +V+CR + S FAF+EF A AA
Sbjct: 281 EELRRTAHVSNYPSALTVEQVKQLFSFCGTIVECR---EGPSGKNFAFIEFESNKEALAA 337
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
L L G +G +RV +KT P +PR+
Sbjct: 338 LALNGMNVGGRNIRVELAKT------PRLMPRA 364
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
E RT + +N + +VKQ F + CG + R + AF+EF + A+
Sbjct: 281 EELRRTAHVSNYPSALTVEQVKQLF-SFCG-TIVECR---EGPSGKNFAFIEFESNKEAL 335
Query: 270 LALNCSGMVLGSQPIRVSPSKTP-VRPRVT 298
AL +GM +G + IRV +KTP + PR T
Sbjct: 336 AALALNGMNVGGRNIRVELAKTPRLMPRAT 365
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++Y D+D N TE +L LFS+ G VV RVC D L +A+V F ARA
Sbjct: 21 SLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDV 80
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L ++ P+R++ S+ +P R+ ++ N+DK++ + F
Sbjct: 81 LNFNVVNGKPIRIMYSQR-----DPAL-------RKSGVGNIFIKNLDKEIDNKALYDTF 128
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
G + ++ D ++ FV+FA E+A A++ +GM+L + + V P
Sbjct: 129 SQF--GNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGP 182
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 107 FRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
F A+R + + + +Y+ +++ + + +L LF+ G + CRV D R AFV
Sbjct: 287 FDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRGSAFV 346
Query: 162 EFAD-EHGARAALNLGGTMLGYYPVRV 187
F+ + RA + G M G P+ V
Sbjct: 347 AFSSADEATRAVTEMNGKMAGTKPLYV 373
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 41 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 100
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 101 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 146
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 147 LEQLFSQY--GRIITSRILVDQVTGGSRGVGFIRFDKRVEAEEAIKGLNGQKPSGAAEPI 204
Query: 285 RVSPSKTP 292
V + P
Sbjct: 205 TVKFANNP 212
>gi|327271181|ref|XP_003220366.1| PREDICTED: ELAV-like protein 4-like [Anolis carolinensis]
Length = 410
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 86 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 145
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 146 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 191
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 192 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 249
Query: 285 RVSPSKTP 292
V + P
Sbjct: 250 TVKFANNP 257
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL- 173
RT++V ++D IT+E LA LF+ G V ++ D L FAFVEF+D + A AL
Sbjct: 38 RTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQ 97
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
++ G L +RV A+ P P + E R V+ ++ ++ ++++
Sbjct: 98 SMNGRQLLEREMRV---NWAVEPNQPGDRNKPETSRHFH---VFVGDLSAEIDSTKLREA 151
Query: 234 FEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
F GEV+ +++ D+ + FV + E A A+ +G LG + IR
Sbjct: 152 F--LPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRT 205
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+ +++TE L +F++ G V+ RVC D L +A+V + + A AL+
Sbjct: 17 SLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALD- 75
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y ++ P++ +P+ R+ + ++ N+DK + + K F+
Sbjct: 76 ---TLNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKTI---DNKALFD 122
Query: 236 A-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
+ G + ++ D S FV + ESA A+ +GM LGS+ + V
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH---FSVINNNF 73
TN K NN+ K T + L ++F + P+ + Q D F +N
Sbjct: 205 TNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITS----AVVMQDGDGKSKCFGFVNFEN 260
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKR--------LSGRAFRAQREDSVRR----TVYV 121
ADD +S ++ N + + G+ + L GR F +++V + +YV
Sbjct: 261 ADDAARS-VEALNGKKFDDKEWYVGKAQKKTEREVELKGR-FEQSLKEAVDKFQGLNLYV 318
Query: 122 SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTM 179
++D +I +++L LFS G + C+V DP+ + R + FV F+ E +RA ++ G M
Sbjct: 319 KNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKM 378
Query: 180 LGYYPVRV 187
+ P+ V
Sbjct: 379 VASKPLYV 386
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ N+T+ L LF G VV RVC D + L + +V + + A A
Sbjct: 30 VSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARA 89
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ ML + P+ P + +P+ R + ++ N+DK + +
Sbjct: 90 LD----MLNFTPLNGKPIRIMYSFRDPSI-------RRSGTANIFIKNLDKAIDNKALYD 138
Query: 233 FFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F + G + ++ D S FV+F ESA A + +GM+L + + V P
Sbjct: 139 TF--STFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGP 194
>gi|351713507|gb|EHB16426.1| ELAV-like protein 4 [Heterocephalus glaber]
Length = 385
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|28879001|gb|AAH48159.1| Elavl4 protein [Mus musculus]
Length = 412
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|449476847|ref|XP_002193793.2| PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3
[Taeniopygia guttata]
Length = 928
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 118 TVYVSDIDQNITE--ERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
TV+VS++ + E +L LF SCG+VV+ R + R + +V+F +E AR AL
Sbjct: 670 TVFVSNLSYTMAEPEAKLRELFGSCGEVVEIRAVFNNKGTFRGYCYVQFREEEAARQALA 729
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK------VPQA 228
L T + P+ V P NP F Y T ++K +P +
Sbjct: 730 LDRTAVEGRPMFVSPCVDK--NKNPDF-----------KVFRYSTTLEKHKLFISGLPFS 776
Query: 229 EVKQFFEAACG--GEVTRLRLLGDHVHSTR-IAFVEF-AVAESAILALNCSGMVLGSQPI 284
K+ E C G V +RL+ + + +A+VE+ + A+++ L G+ + I
Sbjct: 777 CTKEELEEVCKAHGNVKDIRLVTNRAGKPKGLAYVEYESEAQASQAVLKMDGLTMKDHVI 836
Query: 285 RVSPSKTPVRPRVTRP 300
+V S P+R RP
Sbjct: 837 KVMISNPPLRKLPDRP 852
>gi|608543|gb|AAA96945.1| ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|390465922|ref|XP_003733491.1| PREDICTED: ELAV-like protein 4 isoform 4 [Callithrix jacchus]
gi|403258121|ref|XP_003921627.1| PREDICTED: ELAV-like protein 4 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 402
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 78 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 137
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 138 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 183
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 184 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 241
Query: 285 RVSPSKTP 292
V + P
Sbjct: 242 TVKFANNP 249
>gi|388496342|gb|AFK36237.1| unknown [Medicago truncatula]
Length = 202
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 104 GRAFRAQRE--------DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS- 154
GR FR ++E + +RTV+ + TE + FS G+V D R+ D +S
Sbjct: 18 GRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 77
Query: 155 -VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA--ILPVNPTFLPRSEDEREM 211
++EF D A+ L G +L PV V PS+ ++ N +
Sbjct: 78 RSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGA 137
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
R +Y N+ + +A +++ FE EV +L L + H FV+FA E A A
Sbjct: 138 VDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA 197
Query: 272 LNCSG 276
+ +G
Sbjct: 198 QSLNG 202
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFV 260
P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S + ++
Sbjct: 30 PEADPERD--QRTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYI 85
Query: 261 EFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
EF A S +A+ SG +L QP+ V PS+
Sbjct: 86 EFYDAMSVPMAIALSGQLLLGQPVMVKPSEA 116
>gi|328716895|ref|XP_001948178.2| PREDICTED: RNA-binding protein lark-like [Acyrthosiphon pisum]
Length = 376
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG 177
+++ ++ + T + LF G+VV+C V + F FV D+ RAA+ L G
Sbjct: 52 IFIGNLSEKTTSSDIRPLFEKYGKVVECDV------MKNFGFVHMDDDTTGRAAIKALNG 105
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
+M+ ++V + + P PT ++ N+ + + EV++ FE
Sbjct: 106 SMVNDLAMKVETATSRRGPNTPT-------------TKIFVGNLSETTKENEVRELFERY 152
Query: 238 CGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRV 297
G V ++ + FV + + L + +G +L +PI+V S + VRP
Sbjct: 153 --GTVVECDIVRTY------GFVHIDSTDVSRLIKDLNGYMLDGKPIKVQISNSRVRP-- 202
Query: 298 TRPGM 302
RPGM
Sbjct: 203 -RPGM 206
>gi|355557990|gb|EHH14770.1| hypothetical protein EGK_00744 [Macaca mulatta]
Length = 385
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|84662766|ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]
gi|354468156|ref|XP_003496533.1| PREDICTED: ELAV-like protein 4 isoform 3 [Cricetulus griseus]
gi|2500580|sp|Q61701.1|ELAV4_MOUSE RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|603495|dbj|BAA06723.1| HuD [Mus musculus]
gi|440906869|gb|ELR57085.1| ELAV-like protein 4 [Bos grunniens mutus]
Length = 385
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|390465926|ref|XP_003733492.1| PREDICTED: ELAV-like protein 4 isoform 5 [Callithrix jacchus]
gi|403258123|ref|XP_003921628.1| PREDICTED: ELAV-like protein 4 isoform 4 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 161 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID++V E ++ FE GE+T L D +R FV F+ +SA A++
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 63 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 117
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-TVYCTN 220
EFAD + A AL RVL K + VN P S+ + + V+ +
Sbjct: 118 EFADHYTAAQALQA-------MNKRVLLEKE--MKVNWATEPGSQAKVDTSKHFHVFVGD 168
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILAL-NCSGM 277
+ +V +K F A GEV+ +++ D + S FV + E A A+ +G
Sbjct: 169 LSPEVDNKALKDAF--APFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQ 226
Query: 278 VLGSQPIRVS 287
LG + IR +
Sbjct: 227 WLGRRTIRTN 236
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + F++ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFA 263
+ VY N + +++ FE G +T +++ S+R +AF +
Sbjct: 186 EKAKLFTNVYVKNFGEDFSDEMLREMFEKY--GRITSHKVMYKEDGSSRGFGFVAFEDPD 243
Query: 264 VAESAILALNCSGMVLGSQPIRVS 287
AE A + LN +V G +P+ V
Sbjct: 244 AAERACMELNGKELVEG-KPLYVG 266
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-N 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDIIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A ++ +GM+L + + V
Sbjct: 120 TAF--GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
>gi|332219807|ref|XP_003259049.1| PREDICTED: ELAV-like protein 4 isoform 4 [Nomascus leucogenys]
gi|332808951|ref|XP_001135610.2| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 10 [Pan troglodytes]
gi|397518906|ref|XP_003829616.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pan paniscus]
gi|402854509|ref|XP_003891910.1| PREDICTED: ELAV-like protein 4 isoform 4 [Papio anubis]
gi|426329579|ref|XP_004025816.1| PREDICTED: ELAV-like protein 4 isoform 4 [Gorilla gorilla gorilla]
gi|119627246|gb|EAX06841.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Homo sapiens]
Length = 402
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 78 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 137
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 138 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 183
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 184 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 241
Query: 285 RVSPSKTP 292
V + P
Sbjct: 242 TVKFANNP 249
>gi|221042398|dbj|BAH12876.1| unnamed protein product [Homo sapiens]
Length = 332
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 8 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 67
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 68 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 113
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 114 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 171
Query: 285 RVSPSKTP 292
V + P
Sbjct: 172 TVKFANNP 179
>gi|117647212|ref|NP_001071119.1| ELAV-like protein 4 [Rattus norvegicus]
gi|2500581|sp|O09032.1|ELAV4_RAT RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|1911579|gb|AAB50733.1| HuD [Rattus sp.]
gi|165970854|gb|AAI58559.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Rattus norvegicus]
Length = 373
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|81914424|sp|Q8CH84.1|ELAV2_RAT RecName: Full=ELAV-like protein 2; AltName: Full=Hu-antigen B;
Short=HuB
gi|27374986|dbj|BAC53775.1| RNA binding protein HuB [Rattus norvegicus]
Length = 359
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTML 180
+ QN+T+E L LF S G++ C++ D + L + FV + D A A+N L G L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 181 GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG 240
++V ++ P S R+ +Y + + K + Q E++Q F G
Sbjct: 106 QTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKELEQLFSQY--G 149
Query: 241 EVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSPSKTP 292
+ R+L D V S + F+ F AE AI LN ++PI V + P
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206
>gi|395730526|ref|XP_003775742.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 402
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 78 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 137
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 138 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 183
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 184 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 241
Query: 285 RVSPSKTP 292
V + P
Sbjct: 242 TVKFANNP 249
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + + G +A
Sbjct: 58 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEE 117
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 118 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDGAIDNKALHDTF 165
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKTP 292
A G + ++ D + +S FV + AE+A A+ +GM+L + + V P
Sbjct: 166 --AAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVG-HHIP 222
Query: 293 VRPRVTR 299
+ R+++
Sbjct: 223 KKDRMSK 229
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + + +
Sbjct: 129 RIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 188
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A A+ + G +L V V +P K + +E +
Sbjct: 189 FVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKF---------EEMKANFTN 239
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN 273
VY NID +V E ++ FE G++T L D+ S FV F ESA A++
Sbjct: 240 VYVKNIDLEVTDDEFRELFEKY--GQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVD 297
>gi|328715702|ref|XP_003245699.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2
[Acyrthosiphon pisum]
gi|328715706|ref|XP_003245700.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 3
[Acyrthosiphon pisum]
Length = 420
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEF---ADEHGARAAL 173
++V D+ I + L F+ G++ DCRV DP ++ + FV F A+ A AA+
Sbjct: 64 IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAEAESAIAAM 123
Query: 174 NLGGTMLGYYPVRV--LPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQ 227
N G LG +R K L + P + DE S TVYC + +
Sbjct: 124 N--GQWLGSRSIRTNWATRKPPTLKTDSNTKPLTFDEVYNQSSPTNCTVYCGGLTSGLTD 181
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAES---AILALNCSGMVLGSQPI 284
V++ F A G + +R+ D + AFV FA ES AI+A++ S + QP+
Sbjct: 182 ELVQKTF--APFGNIQEIRVFKDKGY----AFVRFATKESATHAIVAVHNSD--INGQPV 233
Query: 285 RVSPSKTPVRPRVTR 299
+ S K P V++
Sbjct: 234 KCSWGKESGEPIVSQ 248
>gi|281347138|gb|EFB22722.1| hypothetical protein PANDA_010481 [Ailuropoda melanoleuca]
Length = 377
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 39 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 98
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 99 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 144
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 145 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 202
Query: 285 RVSPSKTP 292
V + P
Sbjct: 203 TVKFANNP 210
>gi|12851808|dbj|BAB29173.1| unnamed protein product [Mus musculus]
Length = 371
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMIQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>gi|49119672|gb|AAH72716.1| Zgc:91918 [Danio rerio]
Length = 360
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + + A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQF--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|19112586|ref|NP_595794.1| poly(A) binding protein Pab2 [Schizosaccharomyces pombe 972h-]
gi|74675955|sp|O14327.1|PAB2_SCHPO RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName:
Full=Poly(A)-binding protein II; Short=PABII
gi|2467274|emb|CAB16904.1| poly(A) binding protein Pab2 [Schizosaccharomyces pombe]
Length = 166
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFA 159
A R +E ++VYV ++D ++T E L F+SCG V + C + G P FA
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FA 99
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
++EF++ AL L G+ML P++V P +T +
Sbjct: 100 YIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV 264
D+ + +++VY N+D V E++ F A+CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHF-ASCGS-VNRVTILCDKFTGHPKGFAYIEFSE 105
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGM 302
AL +G +L +P++V+P +T V PGM
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV------PGM 137
>gi|73977005|ref|XP_860272.1| PREDICTED: ELAV-like protein 4 isoform 15 [Canis lupus familiaris]
Length = 380
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|179537|gb|AAA58396.1| brain protein [Homo sapiens]
gi|14280329|gb|AAK57541.1| HUDPRO1 [Homo sapiens]
gi|119627247|gb|EAX06842.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Homo sapiens]
Length = 380
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 36 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 90
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-TVYCTN 220
EFAD + A AL RVL K + VN P S+ + + V+ +
Sbjct: 91 EFADHYTAAQALQAMNK-------RVLLEKE--MKVNWATEPGSQAKVDTSKHFHVFVGD 141
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILAL-NCSGM 277
+ +V +K F A GEV+ +++ D + S FV + E A A+ +G
Sbjct: 142 LSPEVDNKALKDAF--APFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQ 199
Query: 278 VLGSQPIRVS 287
LG + IR +
Sbjct: 200 WLGRRTIRTN 209
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 161 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID++V E ++ FE GE+T L D +R FV F+ +SA A++
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 158 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 210
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 181 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID+ V + E ++ FE GE+T L D +R FV F+ ESA A++
Sbjct: 234 IKNIDQDVTEEEFRELFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ N+ + +L LFS G VV RVC D + L + +V +++ A A
Sbjct: 28 VTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 87
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ + ++ N+DK + +
Sbjct: 88 LDVLNFTPLNGKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKGIDHKALH 135
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F A G + ++ D ++ FV+F E+A A++ +GM+L + + V P
Sbjct: 136 DTFSAF--GNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 192
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH---FSVINN 71
+ N K NN+ K T + L +F + P+ + D F +N
Sbjct: 201 STINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITS----VVVMRDGDGKSKCFGFVNF 256
Query: 72 NFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRTV--------Y 120
DD S ++ N + + G+ ++ S R +++ E +++ V Y
Sbjct: 257 ENVDDAAMS-VEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLY 315
Query: 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGT 178
+ ++D +I +++L LF+ G + C+V DP+ + R + FV F+ E +RA +
Sbjct: 316 IKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSK 375
Query: 179 MLGYYPVRV 187
M+ P+ V
Sbjct: 376 MVVSKPLYV 384
>gi|356512787|ref|XP_003525097.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 554
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 14/198 (7%)
Query: 104 GRAFRAQREDSV--------RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV 155
GR FR ++E S +RTV+ + TE + FS G+V D R+ D +S
Sbjct: 174 GRRFRVKKEASEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 233
Query: 156 LR--FAFVEFADEHGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFLPRSEDERE 210
++EF D A+ L G +L PV V PS K +
Sbjct: 234 RSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYG 293
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270
R +Y N+ + ++++++ FE EV +L L + H FV+F E A
Sbjct: 294 AVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKA 353
Query: 271 ALNCSG-MVLGSQPIRVS 287
A + +G + + + I+VS
Sbjct: 354 AQSLNGKLEIAGRTIKVS 371
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFV 260
P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S + ++
Sbjct: 186 PEADPERD--QRTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYI 241
Query: 261 EFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
EF A S +A+ SG +L QP+ V PS+
Sbjct: 242 EFYDAMSVPMAIALSGQLLLGQPVMVKPSEA 272
>gi|297664977|ref|XP_002810889.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pongo abelii]
Length = 380
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|221316765|ref|NP_068771.2| ELAV-like protein 4 isoform 1 [Homo sapiens]
gi|114556466|ref|XP_001134946.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 2 [Pan troglodytes]
gi|332219811|ref|XP_003259051.1| PREDICTED: ELAV-like protein 4 isoform 6 [Nomascus leucogenys]
gi|395855045|ref|XP_003799982.1| PREDICTED: ELAV-like protein 4 isoform 5 [Otolemur garnettii]
gi|397518912|ref|XP_003829619.1| PREDICTED: ELAV-like protein 4 isoform 6 [Pan paniscus]
gi|402854513|ref|XP_003891912.1| PREDICTED: ELAV-like protein 4 isoform 6 [Papio anubis]
gi|426329583|ref|XP_004025818.1| PREDICTED: ELAV-like protein 4 isoform 6 [Gorilla gorilla gorilla]
gi|223590202|sp|P26378.2|ELAV4_HUMAN RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|380810344|gb|AFE77047.1| ELAV-like protein 4 isoform 1 [Macaca mulatta]
Length = 380
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|84662764|ref|NP_001033787.1| ELAV-like protein 4 isoform b [Mus musculus]
gi|291398924|ref|XP_002715150.1| PREDICTED: ELAV-like 4-like isoform 1 [Oryctolagus cuniculus]
gi|426215488|ref|XP_004002004.1| PREDICTED: ELAV-like protein 4 isoform 4 [Ovis aries]
gi|26347767|dbj|BAC37532.1| unnamed protein product [Mus musculus]
gi|112180554|gb|AAH52451.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Mus musculus]
Length = 380
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG----DPHSVLRFAFVEFADEHGARAAL 173
T+YV ++DQ +T+ L +F++ GQVV ++ + + + FVEFAD A A+
Sbjct: 19 TIYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAI 78
Query: 174 -NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
++ G + Y +R ++ + +NP ED V+ ++ ++ ++ Q
Sbjct: 79 QDMNGRKIFNYEIRANWAQPS-ANINPPLQMTKEDTTNHFH--VFVGDLAAEINDEKLAQ 135
Query: 233 FFEAACGGEVTRLRLLGDHVHSTR-----IAFVEFAVAESAILALNCSGMVLGSQPIR 285
F G ++ ++ D + +AF + AE AI +N G LG++PIR
Sbjct: 136 AFSEF--GTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMN--GEWLGTRPIR 189
>gi|291398930|ref|XP_002715153.1| PREDICTED: ELAV-like 4-like isoform 4 [Oryctolagus cuniculus]
Length = 402
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 78 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 137
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 138 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 183
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 184 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 241
Query: 285 RVSPSKTP 292
V + P
Sbjct: 242 TVKFANNP 249
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A A+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME- 101
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + PV P+ + R R+ + ++ N+DK + + F
Sbjct: 102 ---MLNFTPVNG-------KPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFS 151
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ + S FV++ ESA A+N +GM+L + + V P
Sbjct: 152 AF--GTILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGP 204
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K NN+ K T L +MF K P+ F +N DD +
Sbjct: 219 KFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIV-VRADDGKSRCFGFVNFENPDDAAR- 276
Query: 81 AIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSDIDQNIT 129
A+++ N + GR ++ S R + + E S + T +Y+ ++D ++
Sbjct: 277 AVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVD 336
Query: 130 E-ERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLGGTMLGYYPVR 186
+ E+L LF+ G + C+V D + V + + FV F + E +RA + + G M+G P+
Sbjct: 337 DDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLY 396
Query: 187 V 187
V
Sbjct: 397 V 397
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 32 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 91
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 92 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 137
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 138 MEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 195
Query: 285 RVSPSKTP 292
V + P
Sbjct: 196 TVKFANNP 203
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L FS G VV RVC D + L + +V F + + ARA
Sbjct: 37 SLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R + ++ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G + ++ D S FV++A ESA A+ +GM+L + + V P
Sbjct: 145 --SVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 257 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+YV ++D +I++E+L +FS G V C+V DP+ + + FV F+ E A
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAM 375
Query: 173 LNLGGTMLGYYPVRV 187
L G M+ P+ V
Sbjct: 376 SQLSGKMIESKPLYV 390
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 309 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 367
Query: 170 RAALN-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 368 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 410
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLG 280
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 411 TQKELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 468
Query: 281 SQPIRV 286
++PI V
Sbjct: 469 TEPITV 474
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 157 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 209
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 180 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
N+D+++ + E +Q FE GE+T L D +R FV ++ +SA A++
Sbjct: 233 IKNLDQEISEEEFRQMFEKF--GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNLG 176
+YV ++D ++TE L LFS G V RVC D + L +A+V F D + R A+
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIE-- 99
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P++ P + +P+ R+ S V+ N+ + + F
Sbjct: 100 --KLNYTPIKGRPCRIMWSQRDPSL-------RKKGSGNVFIKNLHPAIDNKALHDTF-- 148
Query: 237 ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNC-SGMVLGSQPIRVSP 288
+ G + ++ D +R FV F E+A A++ +GM+L + V+P
Sbjct: 149 SVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAP 202
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAA----- 172
VYV +ID T+E +FS+ G + + D LR F FV F D + A A
Sbjct: 223 VYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELN 282
Query: 173 -LNLGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
+ G L Y R + + + R E + ++ N+D V ++
Sbjct: 283 DTDFKGQKL--YVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKL 340
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
++ F A G +T ++++ D +++ FV F+ E A A+ + ++ +P+ V+
Sbjct: 341 EEEF--APFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 397
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ V++ ++ I + L FS G ++ C++ D R F
Sbjct: 112 RIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIATDETGKSRKFG 171
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FV F +E A+ A++ + G +L V V P V+ DE + VY
Sbjct: 172 FVHFEEEEAAKEAIDAINGMLLNGLEVYVAPH------VSKKDRQSKLDEVKSNFTNVYV 225
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA 271
NID + Q E ++ F + G +T L D+ R FV F +A+ A
Sbjct: 226 KNIDSETTQEEFEKMF--SNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKA 277
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L + V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQHAINTMNGMLLNDHKVFV-----------GHFKSRREREVELGARAMEFT 191
Query: 220 NIDKKVPQAEV-----KQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESA 268
NI K QA+V ++ F G++ ++++ D HS FV F E A
Sbjct: 192 NIYVKNLQADVDEQGLQELFSQF--GKMLSVKVMRDSSGHSRGFGFVNFETHEEA 244
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEASIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVL 279
+ G + ++ D S FV F E+A A+N +GM+L
Sbjct: 120 --STFGNILSCKVACDEHGSRGFGFVHFETHEAAQHAINTMNGMLL 163
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D + R +YV ++D +I +E+L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|356563290|ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 402
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 30/211 (14%)
Query: 101 RLSGRAFRA---QREDSVRRTVYVSDIDQNITEERLAGLF------SSCGQVVDCRVCGD 151
RL+ F A + +DS T++V D+ ++T+ L F + +VV R+ G
Sbjct: 139 RLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTG- 197
Query: 152 PHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPS-----KTAILPVNPTFLPR- 204
+ FV F DE RA + G + P+R+ P+ T P P+
Sbjct: 198 --RTKGYGFVRFGDESEQVRAMSEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQG 255
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA- 263
+++E + + T++ N+D V ++Q F GE+ +++ R FV+FA
Sbjct: 256 AQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQY--GELVHVKIPA----GKRCGFVQFAD 309
Query: 264 --VAESAILALNCSGMVLGSQPIRVSPSKTP 292
AE A+ LN G +LG Q +R+S ++P
Sbjct: 310 RSCAEEALRVLN--GTLLGGQNVRLSWGRSP 338
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 114 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 173
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 174 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 216
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 217 QKELEQLFSQY--GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAA 274
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 275 EPITVKFANNP 285
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 32 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 91
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 92 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 137
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 138 MEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 195
Query: 285 RVSPSKTP 292
V + P
Sbjct: 196 TVKFANNP 203
>gi|66810518|ref|XP_638966.1| hypothetical protein DDB_G0283687 [Dictyostelium discoideum AX4]
gi|60467589|gb|EAL65610.1| hypothetical protein DDB_G0283687 [Dictyostelium discoideum AX4]
Length = 727
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
E+S +RTV+VS + QNI E+ L+ LFS G V++ R+ D + + +VEF+ +
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+ L G++L + V +I P S SR +Y I V + +
Sbjct: 321 DKAIALSGSVLDGQQILV----HSIQPEKKVIKSNSTGSSGGESR-IYVGYIHLSVAEEQ 375
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHS----TRIAFVEFAVAESAILAL 272
++ F+ G++ + ++H+ ++ AF++F ESA A+
Sbjct: 376 IRVIFQPY--GDIDFI-----NIHTKPGISKYAFIQFKTQESAKRAI 415
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF---ADEHGARAA 172
++YV D+D+++TE +L +FS G V RVC D + L +A+V + D A A
Sbjct: 39 SLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERA 98
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L Y P+ P + +P F R+ ++ N+D+ V +
Sbjct: 99 LD----QLNYTPLVGRPMRIMWSHRDPAF-------RKSGVGNIFIKNLDRSVDNKALHD 147
Query: 233 FFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F A G + ++ D S FV F ESA LA+ +GM+L + + V P
Sbjct: 148 TFSAF--GNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGP 203
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R QR+ R+T ++V ++D +I+ L +FS G ++ C+V G+ F F
Sbjct: 89 RIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGENGRSKGFGF 148
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM-CS--RTV 216
V+F + A A L TMLG + V F+ ++E C +
Sbjct: 149 VQFESQDSALVAQTALHDTMLGGKKLHVCK-----------FVKKTERTAAAPCEVFTNL 197
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALNC- 274
Y N+D+ + + +K F G+V+ + ++ DH S FV F + A A++
Sbjct: 198 YVKNLDETITEDGLKDMFSVV--GDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVM 255
Query: 275 SGMVLGSQPIRVSPSK 290
+G V+GS+ + V ++
Sbjct: 256 NGSVIGSKTLFVGKAQ 271
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
NL K + T L DMF+ + ++ H+ HF +N DD K+ A+D
Sbjct: 196 NLYVKNLDETITEDGLKDMFSVVGDVS-SVAIMMDHEGKSKHFGFVNFKSPDDAKK-AVD 253
Query: 84 NFNNNRRRRNNFNQGR-KRLSGRAFRAQRE---------DSVRRT-VYVSDIDQNITEER 132
N + G+ +R S R ++E + +R + +YV +++ +I +++
Sbjct: 254 VMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKK 313
Query: 133 LAGLFSSCGQVVDCRV-CGDPHSVLRFAFVEFADEHGARAAL 173
L +FS+ G+++ +V C + + +F FV FA A AL
Sbjct: 314 LKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKAL 355
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRV--CGDPHSVLRFAFVE-FADEHGARAALN 174
++YV D+D +TE L F G + R+ C L +A+V ++ +RA
Sbjct: 18 SLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGL 77
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ + R R+ ++ N+D + + ++ F
Sbjct: 78 LNHTNLKGKPMRIM------------WCQRDPFARKTGFANLFVKNLDFSISSSCLESIF 125
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
G + ++ G++ S FV+F +SA++A
Sbjct: 126 SKY--GTILSCKVAGENGRSKGFGFVQFESQDSALVA 160
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 63 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 117
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-TVYCTN 220
EFAD + A AL RVL K + VN P S+ + + V+ +
Sbjct: 118 EFADHYTAAQALQAMNK-------RVLLEKE--MKVNWATEPGSQAKVDTSKHFHVFVGD 168
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILAL-NCSGM 277
+ +V +K F A GEV+ +++ D + S FV + E A A+ +G
Sbjct: 169 LSPEVDNKALKDAF--APFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQ 226
Query: 278 VLGSQPIRV 286
LG + IR
Sbjct: 227 WLGRRTIRT 235
>gi|149693657|ref|XP_001492578.1| PREDICTED: ELAV-like protein 4 isoform 4 [Equus caballus]
Length = 380
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 152 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 211
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 212 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 257
Query: 230 VKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 258 LEQLFSQY--GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPI 315
Query: 285 RVSPSKTP 292
V + P
Sbjct: 316 TVKFANNP 323
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ N+ E +L LFS QVV RVC D + L +A+V F++ A A+ L
Sbjct: 34 SLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMEL 93
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ + + +P+ R+ V+ N+D + +++ F
Sbjct: 94 ----LNFTPLNGKAIRIMVSHRDPSM-------RKSGHANVFIKNLDTSIDNKALQETF- 141
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G V ++ D + S FV+F E+A A+N +GM++ + + V
Sbjct: 142 -ASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVG 194
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 18/181 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ + ++E L FS+ G + V D + F FV F A AA+ L
Sbjct: 214 VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 273
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDER-----EMCSRTVYCTNIDKKVPQA 228
GT +Y R + F E ER ++ + +Y N+D K+
Sbjct: 274 GTTFNDKVWYVGRAQRKGEREAELKARF----EQERNSRYEKLKAANLYLKNLDDKIDDE 329
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH-STRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
++K+ F G +T +++ D S FV F+ E A ALN +G ++G +P+ V
Sbjct: 330 KLKELFSEF--GSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 387
Query: 287 S 287
+
Sbjct: 388 A 388
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FSS G V+ RVC D + L +A+V F A AL+
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R + ++ N+DK + + F
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
+ G + ++ D ++S FV F ESA A+ +GM+L + + V
Sbjct: 127 --SMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG----K 180
Query: 293 VRPRVTR 299
+PR+ R
Sbjct: 181 FQPRMAR 187
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR----FAFVEFADEHGARAAL 173
++YV D+ ++TE L +F+ G V RVC D SV R +A+V F + A AL
Sbjct: 35 SLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRD--SVTRRSLGYAYVNFHNVADAERAL 92
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ L Y P+R + +PT R+ + V+ N+DK + +
Sbjct: 93 DT----LNYSPIRGKQCRIMWSHRDPTL-------RKAGNANVFVKNLDKTIDNKALYDT 141
Query: 234 FEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
F + G + ++ D +R FV F ESA A+ +GM++G + + V P
Sbjct: 142 F--SLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGP 196
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 82 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 136
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-TVYCTN 220
EFAD + A AL RVL K + VN P S+ + + V+ +
Sbjct: 137 EFADHYTAAQALQA-------MNKRVLLEKE--MKVNWATEPGSQAKVDTSKHFHVFVGD 187
Query: 221 IDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILAL-NCSGM 277
+ +V +K F A GEV+ +++ D + S FV + E A A+ +G
Sbjct: 188 LSPEVDNKALKDAF--APFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQ 245
Query: 278 VLGSQPIRVS 287
LG + IR +
Sbjct: 246 WLGRRTIRTN 255
>gi|148236291|ref|NP_001081613.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus laevis]
gi|728726|emb|CAA59430.1| Xel-1 [Xenopus laevis]
Length = 389
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N + G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 121 AEKAINTVNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQ 166
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
E++Q F G + R+L D V S + F+ F AE AI LN ++
Sbjct: 167 KELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 224
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 225 PITVKFANNP 234
>gi|347446713|ref|NP_571528.2| ELAV-like protein 4 isoform 3 [Danio rerio]
Length = 403
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 33/194 (17%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 76 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 135
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 136 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 178
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHV-----HSTRIAFVEF---AVAESAILALNCSGMV 278
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 179 QKELEQLFSQY--GRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPS 236
Query: 279 LGSQPIRVSPSKTP 292
++PI V + P
Sbjct: 237 GAAEPITVKFANNP 250
>gi|255554000|ref|XP_002518040.1| conserved hypothetical protein [Ricinus communis]
gi|223542636|gb|EEF44173.1| conserved hypothetical protein [Ricinus communis]
Length = 946
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG +A +ED++++T+ VS++ +T ++L LFS G VV+C + H FA++E
Sbjct: 336 SGSPDKAGKEDTLKKTLQVSNLSPLLTVDQLKQLFSYFGSVVECSITDSKH----FAYIE 391
Query: 163 FADEHGARAALNLGGTMLGYYPVRV-----LPSKTAI 194
++ A AAL L +G P+ V LP K+ +
Sbjct: 392 YSKPEEATAALALNNMDVGGRPLNVEMAKSLPQKSLL 428
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + + A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 169 ELEQLFSQF--GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEP 226
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 227 ITVKFANNP 235
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ Q++T+ +L +F+ G V + R+C D + L +A+V + + A AL+
Sbjct: 9 SLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDT 68
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ R++ S+ R R+ ++ N+DK V + F
Sbjct: 69 LNNTLVKGKACRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSVDHKALFDTF 116
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILA-LNCSGMVLGSQPIRVSPSKT 291
A G + +++ D + ++ FV + +SA A + +GM++ Q + V P K+
Sbjct: 117 SAF--GNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKS 173
>gi|347446708|ref|NP_001231529.1| ELAV-like protein 4 isoform 1 [Danio rerio]
Length = 411
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 33/194 (17%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 143
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 144 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 186
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHV-----HSTRIAFVEF---AVAESAILALNCSGMV 278
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 187 QKELEQLFSQY--GRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPS 244
Query: 279 LGSQPIRVSPSKTP 292
++PI V + P
Sbjct: 245 GAAEPITVKFANNP 258
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE- 98
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + P+ P + + R R+ + ++ N+DK + + F
Sbjct: 99 ---MLNFTPINGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTF- 147
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
+ G + ++ + ++ FV+F + E+A A++ +GM+L + + V P
Sbjct: 148 -SVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGP 201
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVC--GDPHSVLRFAFVEFAD-EHGARAALNL 175
VYV ++ ++ TE+ L +F G + V GD S F FV F + + ARA +L
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRC-FGFVNFENPDDAARAVEDL 278
Query: 176 GGTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAE-V 230
G +Y R + + F ++ + T +Y N+D + E +
Sbjct: 279 NGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKL 338
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
K+ F A G +T +++ D + S FV F AE A AL +G ++GS+P+ V+
Sbjct: 339 KEIF--ADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 20/206 (9%)
Query: 98 GRKRLSGRAF-RAQREDSVRRT------VYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
G+K G+ RA+RE + VYV + +N+T+E+L LF + G + C V
Sbjct: 167 GKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMA 226
Query: 151 DPHSVLR-FAFVEFADEHGARAALN------LGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
+P + F F+ F + A A+ L GT L Y R I + +
Sbjct: 227 NPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNL--YVGRAQKKSERIKELKKCYEQ 284
Query: 204 -RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
+ E + VY N+D +++ F G +T +++ + S FV F
Sbjct: 285 MKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQF--GAITSAKVMTEGGRSKGFGFVCF 342
Query: 263 AVAESAILALN-CSGMVLGSQPIRVS 287
+ E A A+ G ++GS+PI V+
Sbjct: 343 STPEEASKAITEMDGRMIGSKPIYVA 368
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 17/173 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS GQ++ RVC D + L +A+V F+ A L+
Sbjct: 13 SLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDT 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 73 MNFDLLKGKPIRIMWSQ------------RDPSLRKSGIGNVFIKNLDKSIDNKAMYDTF 120
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
+A G ++ + D S FV F E+A A+ +GM+L + + V
Sbjct: 121 -SAFGNILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYV 172
>gi|403302354|ref|XP_003941825.1| PREDICTED: ELAV-like protein 3 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 352
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|410950486|ref|XP_003981936.1| PREDICTED: ELAV-like protein 3 isoform 1 [Felis catus]
gi|431918945|gb|ELK17812.1| ELAV-like protein 3 [Pteropus alecto]
Length = 352
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMS 136
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN + +
Sbjct: 137 QKEMEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 194
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 195 EPITVKFANNP 205
>gi|40807107|gb|AAH65343.1| Elavl3 protein [Danio rerio]
Length = 359
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH---STRIAFVEFAV---AESAILALNCSGMVLGSQP 283
++Q F G + R+L D V S + F+ F AE AI LN + ++P
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|449487626|ref|XP_004157720.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101203535
[Cucumis sativus]
Length = 936
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D+++RT+ VS++ +T E+L LF CG VV+C + H FA++E++ A AA
Sbjct: 334 DALKRTLQVSNLSPLLTVEQLKQLFXFCGTVVECTITDSKH----FAYIEYSKPEEATAA 389
Query: 173 LNLGGTMLGYYPVRV-----LPSKTAILPVNPTF 201
L L +G P+ V LP K A NP+
Sbjct: 390 LALNNMDVGGRPLNVEMAKSLPQKPAA--ANPSL 421
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+DQN+ + +L LF+ GQVV RVC D + L + +V F++ A A
Sbjct: 33 VTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARA 92
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L +R++ S R R+ + ++ N+DK + +
Sbjct: 93 LDVLNFTPLNNRSIRIMYSH------------RDPSLRKSGTANIFIKNLDKAIDHKALH 140
Query: 232 QFFEAACGGEVTRLRLLGDHVH-STRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F + G + ++ D S FV+F E+A A++ +GM++ + + V
Sbjct: 141 DTFSSF--GLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVG 196
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR--------KRLSGRAFRAQREDSVRR---TVYVSDI 124
D+ A++ N + + G+ + L GR ++ +E + + +Y+ ++
Sbjct: 265 DDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNL 324
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGY 182
D I++E+L +F+ G + C+V DP + R + FV F+ E RA + G M
Sbjct: 325 DDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAG 384
Query: 183 YPVRV 187
P+ V
Sbjct: 385 KPLYV 389
>gi|348509183|ref|XP_003442131.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oreochromis
niloticus]
Length = 359
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH---STRIAFVEFAV---AESAILALNCSGMVLGSQP 283
++Q F G + R+L D V S + F+ F AE AI LN + ++P
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D + L + +V +++ A A
Sbjct: 29 VPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 88
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ ++ N+DK + +
Sbjct: 89 LDVLNFTPLNNKPLRIMYSH------------RDPSIRKSGMANIFIKNLDKTIDHKALH 136
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F + G + ++ D S FV+F E+A A++ +GM++ + + V
Sbjct: 137 DTFSSF--GNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVG 192
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D ++ +E+L LFS G + C+V DP + R + FV F+ E +RA L
Sbjct: 314 LYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELN 373
Query: 177 GTMLGYYPVRVLPSK 191
G M+ P+ V P++
Sbjct: 374 GKMVVSKPLYVAPAQ 388
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTV-----YVSDIDQNI 128
+++ Q+AID N ++ G R Q DS + YV ++ ++
Sbjct: 168 SEEAAQNAIDKLNGM------LINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAEST 221
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG---YY 183
T+E L +F G + V D + F FV F + + A+A L G +Y
Sbjct: 222 TDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWY 281
Query: 184 PVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVT 243
+ L + F E + + +Y N+D V ++K+ F G +T
Sbjct: 282 VGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDF--GTIT 339
Query: 244 RLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
+++ D +R FV F+ E A AL +G ++ S+P+ V+P++
Sbjct: 340 SCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQ 388
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR----FAFVEFADEHGARAAL 173
++YV D+ ++TE L +F++ G V RVC D SV R +A+V + A+ AL
Sbjct: 28 SLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRD--SVTRKSLGYAYVNYYSTQDAQEAL 85
Query: 174 -NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
NL + +P R++ S R R + ++ N+DK + + K
Sbjct: 86 ENLNYIEIKGHPTRIMWSN------------RDPSLRRSGAGNIFVKNLDKSI---DTKS 130
Query: 233 FFEA-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
++ + G + ++ D S R FV + ESA A+ +GM++G + + V+P
Sbjct: 131 LYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAP 189
>gi|326503120|dbj|BAJ99185.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 724
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLRFAFVEFADEHGARAALNL 175
+T++V ++ N+ + + F G+V D R D S FA VEFA A+ A L
Sbjct: 465 KTLFVGNLSYNVENDEVKQFFGEAGEVSDIRFATADDGSFKGFAHVEFATTEAAQKAYEL 524
Query: 176 GGTMLGYYPVRV--LPSKTAILPV----NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
G L PVR+ + AI P N +F ++ S T + D + + E
Sbjct: 525 NGHDLSGRPVRLDFARERGAITPGSGRDNSSF------KKSGQSNTAFVRGFDSSLGEDE 578
Query: 230 VKQFFE---AACGGEVTRLRLLGDHVHSTR--IAFVEFAVAESAILALNCSGMVLG 280
++ + ++CG + R+ + D+ T IA+VEF S AL +G +G
Sbjct: 579 IRSSLQEHFSSCGA-IGRVSIPKDYETGTSKGIAYVEFTDGNSLPKALELNGSNIG 633
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL-LGDHVHSTRIAFVE 261
P S + S+T++ N+ V EVKQFF A GEV+ +R D A VE
Sbjct: 454 PASSGQATTGSKTLFVGNLSYNVENDEVKQFFGEA--GEVSDIRFATADDGSFKGFAHVE 511
Query: 262 FAVAESAILALNCSGMVLGSQPIRV 286
FA E+A A +G L +P+R+
Sbjct: 512 FATTEAAQKAYELNGHDLSGRPVRL 536
>gi|198422099|ref|XP_002129220.1| PREDICTED: similar to RNA binding motif protein 39 [Ciona
intestinalis]
Length = 465
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
RT++ + Q I L FSS G+V + ++ D HS A+VEF D AL
Sbjct: 104 RTIFCMQLAQRIRVRDLEEFFSSVGKVREVKLIQDKHSKRSKGIAYVEFKDLESIPLALG 163
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L G L P+ V P+++ + L S + + +Y ++ + + + +K F
Sbjct: 164 LSGQKLLGVPIVVQPTQSEKNKIAAAQL--SLQKAALGPTKLYVGSLHENITEEMIKGIF 221
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G V +++++ D ++R F+ FA AE A AL+ +G + +PI++
Sbjct: 222 SPF--GRVEQVQIIKDDAGASRGYGFITFAEAECAKRALDQLNGFEIAGKPIKL 273
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR---IAFVEFAVAESAI 269
+RT++C + +++ ++++FF + G+V ++L+ D HS R IA+VEF ES
Sbjct: 103 ARTIFCMQLAQRIRVRDLEEFFSSV--GKVREVKLIQDK-HSKRSKGIAYVEFKDLESIP 159
Query: 270 LALNCSGMVLGSQPIRVSPSKT 291
LAL SG L PI V P+++
Sbjct: 160 LALGLSGQKLLGVPIVVQPTQS 181
>gi|242062048|ref|XP_002452313.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
gi|241932144|gb|EES05289.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFADEHG 168
E S +++V D+ ++T+E L LFS+ + V +V D ++ + FV F D++
Sbjct: 197 ELSSDHSIFVGDLAVDVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDND 256
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A+ + G P+RV P+ + P + + + +RTVY +D V +
Sbjct: 257 KTHAMTEMNGVYCSTRPIRVGPATPRRSQGDSGSSPPRQSDVDSTNRTVYVGGLDPNVSE 316
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
E+++ F A G++ +++ + FV+F A AE A+ LN G +G Q +
Sbjct: 317 DELRKAF--AKYGDLASVKI----PFGKQCGFVQFVNRADAEEALQGLN--GATIGKQAV 368
Query: 285 RVSPSKTP 292
R+S ++P
Sbjct: 369 RLSWGRSP 376
>gi|384499302|gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 19/188 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNL 175
TV+V ++ + T E + F CG V D R+ P+ V FA ++F G +AA+ L
Sbjct: 82 TVFVGQLNFDATAEEIRTHFGQCGPVSDVRLRMHPNGVKSRGFAHIDFTSAEGKQAAMAL 141
Query: 176 GGTMLGYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
GT +RV ++ A + + P+++ V+ N+ + +KQ F
Sbjct: 142 DGTEFMGRTIRVDDAQPAQGRSTDTNYGPKTD--------KVFVANLSYDTDEDSLKQAF 193
Query: 235 E--AACGGEVTRLRLLGDHVHSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRVSPS 289
E GE+ L + D IA+++F AE+A+ +N G+ L +PIR S
Sbjct: 194 EKFGTIVGEIG-LPISRDTGRIRGIAYIQFETEDEAEAAVKGMN--GVYLDGRPIRTDFS 250
Query: 290 KTPVRPRV 297
R R+
Sbjct: 251 GDNDRNRL 258
>gi|608549|gb|AAA96940.1| ribonucleoprotein [Danio rerio]
gi|68085524|gb|AAH65965.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Danio rerio]
Length = 367
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 27/191 (14%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 100 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 145
Query: 230 VKQFFEAACGGEVTRLRLLGDHV-----HSTRIAFVEF---AVAESAILALNCSGMVLGS 281
++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 146 LEQLFSQY--GRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAA 203
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 204 EPITVKFANNP 214
>gi|338727192|ref|XP_001916382.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Equus
caballus]
Length = 345
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 38 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 97
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 98 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 143
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 144 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 201
Query: 285 RVSPSKTP 292
V + P
Sbjct: 202 TVKFANNP 209
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A++ + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQLAISTMNGMLLNDRKVFV-----------GHFKSRQEREAELGARAMEFT 191
Query: 220 NIDKKVPQAEVKQF--------FEAACGGEVTRLRLL-GDHVHSTRIAFVEFAVAESA 268
NI K Q ++ ++ F+ + G++ ++++ D HS FV F E A
Sbjct: 192 NIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEA 249
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEVIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
+ G + +++ D S FV F E+A LA++ +GM+L + + V K+
Sbjct: 120 --STFGNILSCKVVCDDHGSRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKS 175
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH--FSVINNNFADDNKQSAID-NFNNNR 89
E+ +Q+L F +P K + H F +N ++ +++ +D N R
Sbjct: 204 EWGLQELFSQFDWSSP-GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVR 262
Query: 90 RRRNNFNQGRKRLS-----GRAFRAQREDSVRR------TVYVSDIDQNITEERLAGLFS 138
R + +KR+ R F ++D + R +YV ++D +I +E+L FS
Sbjct: 263 GRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFS 322
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + +V + F FV F+ E +A + G ++G P+ V
Sbjct: 323 PYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 372
>gi|344283287|ref|XP_003413403.1| PREDICTED: ELAV-like protein 3 [Loxodonta africana]
Length = 360
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D N+T+ +L +F+ GQVV RVC D + L + +V + A AL+
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDI 97
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T P+R++ S R R+ + ++ N+DK + + F
Sbjct: 98 LNFTPFNNKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKTIDHKALHDTF 145
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
+ G + ++ D +R FV+F E+A A++ +GM+L + + V
Sbjct: 146 SSF--GNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYV 197
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAF--RAQREDSVRRTV--------YVSDI 124
D A+++ N + + G+ ++ S R ++Q E S++ V Y+ ++
Sbjct: 266 DAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNL 325
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGY 182
D +I++E L LFS G + C+V DP + R + FV F+ E +RA + G M+
Sbjct: 326 DDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVS 385
Query: 183 YPVRV 187
P+ V
Sbjct: 386 KPLYV 390
>gi|340714141|ref|XP_003395590.1| PREDICTED: hypothetical protein LOC100644519 [Bombus terrestris]
Length = 628
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 36/193 (18%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-----------------DPHSVLR-- 157
RT++V ++ +++T+++L LF G++ R+ G D H ++
Sbjct: 342 RTIFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKRVAAITNDLHPKMKSV 401
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
+A++ F E + AL++ GT VRV S +S D+ E ++V+
Sbjct: 402 YAYIRFESEESTKKALSINGTKFEGNYVRVDMS------------TKSNDKYE-TKKSVF 448
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAF--VEFAVAESAILALNCS 275
N+ V V+ F+ C GE+ +R++ D+ F V F ++ LAL
Sbjct: 449 IGNLHFNVDDDSVRNHFK-RC-GEIQSVRIIRDNQTGVGKGFGYVNFKSEDAVALALELD 506
Query: 276 GMVLGSQPIRVSP 288
G + ++ +RV P
Sbjct: 507 GTTILNREVRVKP 519
>gi|347446711|ref|NP_001231530.1| ELAV-like protein 4 isoform 2 [Danio rerio]
Length = 398
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 33/194 (17%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 71 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 130
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 131 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 173
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHV-----HSTRIAFVEF---AVAESAILALNCSGMV 278
Q E++Q F G + R+L D V S + F+ F AE AI LN
Sbjct: 174 QKELEQLFSQY--GRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPS 231
Query: 279 LGSQPIRVSPSKTP 292
++PI V + P
Sbjct: 232 GAAEPITVKFANNP 245
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 24/189 (12%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HS 154
G LSG + +S ++YV D+ ++TE L FS G ++ RVC D HS
Sbjct: 26 GTIGLSGGSHGHSTPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHS 85
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYY---PVRVLPSKTAILPVNPTFLPRSEDEREM 211
L +A+V F +H A A L L P+R++ S+ R +R+
Sbjct: 86 -LGYAYVNF--QHRAHAEWVLATMNLDVIKGNPIRIMWSQ------------RDPGQRKR 130
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
V+ N++K + + F + G + +++ D S FV F ESA A
Sbjct: 131 GVGNVFVKNLEKSIDNKALYDTF--STFGRILSCKVISDENGSKGYGFVHFETQESAGKA 188
Query: 272 L-NCSGMVL 279
+ +GM+L
Sbjct: 189 IEKMNGMLL 197
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ R+ V+V +++++I + L FS+ G+++ C+V D + + F
Sbjct: 117 RIMWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFGRILSCKVISDENGSKGYGF 176
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ +
Sbjct: 177 VHFETQESAGKAIEKMNGMLLNNLKVFV-----------GRFKSRRERESELGVKAKDYT 225
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
+Y N + + + + F A G ++ + D S FV F E A A++
Sbjct: 226 NIYIKNFGENMDDQRLTEIF-AKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVD 283
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FSS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G++ +++ D S FV FA E+A ++ +GM+L + + V
Sbjct: 120 SAF--GDILSCKVVCDENGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYV 170
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D +
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV FA E A ++ + G +L V V F+ R E M
Sbjct: 137 SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYV-----------GKFMSRKERYDAMGG 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
+ V+ N ++ +++ FE G++ +++ D HS R F E
Sbjct: 186 QQKKFTNVFVKNFGDELDDEGLREMFERY--GKIVSHKVMQDD-HSGRNKGFGFVCFEDP 242
Query: 269 ILALNC 274
I A N
Sbjct: 243 IDAENA 248
>gi|304798|gb|AAA28828.1| polyadenylate-binding protein [Drosophila melanogaster]
gi|304800|gb|AAA02941.1| polyadenylate-binding protein [Drosophila melanogaster]
Length = 465
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 89/168 (52%), Gaps = 18/168 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL R+ K + VN P ++ + ++ S ++ ++ ++ +
Sbjct: 61 ALTAMNK-------RLFLEKE--IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 231 KQFFEAACGGEVTRLRLLGD-HVHSTR----IAFVEFAVAESAILALN 273
++ F A GE++ R++ D H ++ ++FV+ A AE+AI A+N
Sbjct: 112 REAF--APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN 157
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D +T+ +L FS GQVV RVC D + L + +V +A A ALN
Sbjct: 40 SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 99
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L +RV+ + R R+ ++ N+DK + + + F
Sbjct: 100 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 147
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ D S FV++ E+A A++ +GM+L + + V P
Sbjct: 148 SAF--GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGP 201
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAG 135
D+K+ + R Q ++ + + + S +YV ++D+++T+++L
Sbjct: 284 DDKEWFVGKAQKKSERETELKQKFEQ----SLKEAADKSQGSNLYVKNLDESVTDDKLRE 339
Query: 136 LFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
F+ G + C+V DP V R + FV F+ E +RA + G M+ P+ V
Sbjct: 340 HFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYV 393
>gi|357473893|ref|XP_003607231.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355508286|gb|AES89428.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 643
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+S +T++V ++ ++ + F CG+VVD R D + F VEFA A+
Sbjct: 379 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 438
Query: 171 AALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+AL + G L VR + + A P N + R S+TV+ DK + +
Sbjct: 439 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 497
Query: 229 EVK----QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAVAESAILAL 272
E++ + F C GE TR+ + D +S A+++F ++S AL
Sbjct: 498 EIRAKLMEHFGGTC-GEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 546
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+ Q++TE L +F+S G V RVC D + L +A+V + A +
Sbjct: 82 VSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERS 141
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T++ P R++ + R R+ + ++ N+DK + +
Sbjct: 142 LDTLNYTVIKGQPCRIM------------WCHRDPSLRKSGNGNIFVKNLDKNIDNKALY 189
Query: 232 QFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
F + G + ++ D + HS FV + ESA A++ +GM++G + + V P
Sbjct: 190 DTF--SLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGP 246
>gi|440910150|gb|ELR59976.1| ELAV-like protein 3, partial [Bos grunniens mutus]
Length = 373
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|426387251|ref|XP_004060087.1| PREDICTED: ELAV-like protein 3 isoform 1 [Gorilla gorilla gorilla]
gi|355703162|gb|EHH29653.1| Hu-antigen C [Macaca mulatta]
Length = 339
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++ ++K+ FE G+ ++++ D +R FV F E A
Sbjct: 192 NVYIKNFGDEMEDEQLKEMFEKY--GKTLSVKVMTDSSGKSRGFGFVSFEKHEDA 244
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-N 174
++YV D+ ++TE L FS G ++ RVC D S L +A+V F A+ L
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N++K + + + F
Sbjct: 63 MNLDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFVKNLEKSI---DNRALF 107
Query: 235 EAACG-GEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGS 281
+A G G + +++ D S FV F ESA A+ +G+VL S
Sbjct: 108 DAFSGFGNILSCKVVSDENGSKGYGFVHFETQESAEKAIEKMNGIVLKS 156
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSG-------RAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + G R F ++D V R +YV ++
Sbjct: 233 EDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNL 292
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF-ADEHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F A + A+A + G ++
Sbjct: 293 DDTIDDERLRTEFSPFGTITSAKVMMEGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSK 352
Query: 184 PVRV 187
P+ V
Sbjct: 353 PLYV 356
>gi|49355765|ref|NP_115657.2| ELAV-like protein 3 isoform 2 [Homo sapiens]
gi|119604627|gb|EAW84221.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Homo sapiens]
gi|261861050|dbj|BAI47047.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3
[synthetic construct]
gi|380783931|gb|AFE63841.1| ELAV-like protein 3 isoform 2 [Macaca mulatta]
Length = 360
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|426229023|ref|XP_004008593.1| PREDICTED: ELAV-like protein 3 isoform 1 [Ovis aries]
Length = 359
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 17/225 (7%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQREDSVRRTVYVSDIDQNITEER 132
++D+ SAI+ N + G+ + S R + D+ +YV ++D ITEE
Sbjct: 150 SEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPS--PDAKYTNLYVKNLDPGITEEL 207
Query: 133 LAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190
L FS G++V + D R F FV F + AR A+ + GT LG + V
Sbjct: 208 LQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYV--G 265
Query: 191 KTAILPVNPTFLPRS--EDEREMCSR----TVYCTNIDKKVPQAEVKQFFEAACGGEVTR 244
+ L R E +E ++ VY NID V E+++ F + C G +T
Sbjct: 266 RAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHF-SQC-GTITS 323
Query: 245 LRLL-GDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVS 287
+L+ D S FV F+ +E A A+N G + +P+ V+
Sbjct: 324 AKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVA 368
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-DPHSVLRFA 159
R + R+ RR VYV ++ ++I L LF G V+ C+V +
Sbjct: 85 RVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHG 144
Query: 160 FVEFADEHGARAAL-NLGGTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV+F E A +A+ L G+++G Y + + +LP S D +
Sbjct: 145 FVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLP--------SPDAKYT---N 193
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN- 273
+Y N+D + + +++ F G++ + + D S+R FV F + A A+
Sbjct: 194 LYVKNLDPGITEELLQEKFSEF--GKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 274 CSGMVLGSQPIRV 286
+G LGS+ + V
Sbjct: 252 MNGTELGSKVLYV 264
>gi|426387253|ref|XP_004060088.1| PREDICTED: ELAV-like protein 3 isoform 2 [Gorilla gorilla gorilla]
Length = 366
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD 165
+ + E+ V TV+V ++ N+ EE LA F+ CG V R+ D + F +V F
Sbjct: 174 KPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFES 233
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
AA+ L GT L +RV S T P + R E + + T++ N+ V
Sbjct: 234 ADALTAAMALTGTELDGREIRVDVS-TPKPPRDGNRQGRKEAPQSAPTTTLFLGNLSFNV 292
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHST--RIAFVEFAVAESAILAL-NCSGMVLGSQ 282
+ E+++ F G++ +R D +VE+ E+A A+ +G+ + +
Sbjct: 293 TEDEIRESFSQY--GQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGLNGVEIAGR 350
Query: 283 PIRV 286
+R+
Sbjct: 351 SLRL 354
>gi|157093141|gb|ABV22225.1| RNA recognition motif protein [Karlodinium micrum]
Length = 197
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHG 168
RE+ +R+VY+ +D T E L F SCGQ+ + D +S FA+VEFADE
Sbjct: 55 REEVDKRSVYIGSVDYGSTPEELQEHFKSCGQINRITILVDKYSGHPKGFAYVEFADEQS 114
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
+ +L L G++ ++V+ +T + P FL
Sbjct: 115 VQNSLLLNGSLFRGRQLKVMQKRTNV----PGFL 144
>gi|311248628|ref|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Sus
scrofa]
Length = 359
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGAR 170
D+ ++YV ++D +++E L +FS G V RVC D + L +A+V F D R
Sbjct: 46 DTTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGR 105
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A+ L Y P++ P + +P R+ + ++ N+ + +
Sbjct: 106 TAIE----KLNYSPIKGKPCRIMWSQRDPAL-------RKKGAGNIFIKNLHPDIDNKAL 154
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNC-SGMVLGSQPIRVS 287
F + G + ++ D ++ FV F +A+ A++ +GM+L + + V+
Sbjct: 155 HDTF--SVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVA 211
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 38/209 (18%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFA 159
A +++DS T++V D+ ++T+ L F + +VV R+ G +
Sbjct: 146 AGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTG---RTKGYG 202
Query: 160 FVEFADE-HGARAALNLGGTMLGYYPVRVLP------------SKTAILPVNPTFLPRSE 206
FV+F DE RA + G P+R+ P SKT+ NP P ++
Sbjct: 203 FVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTSGSQQFSKTSYQ--NP---PGTQ 257
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---A 263
+E + + T++ N+D V ++Q F GE+ +++ R FV+F +
Sbjct: 258 NENDPNNTTIFVGNLDSNVTDEHLRQVFSQY--GELVHVKIPA----GKRCGFVQFSDRS 311
Query: 264 VAESAILALNCSGMVLGSQPIRVSPSKTP 292
AE A+ LN G +G Q IR+S ++P
Sbjct: 312 CAEEALRILN--GTPIGGQNIRLSWGRSP 338
>gi|395850849|ref|XP_003797986.1| PREDICTED: ELAV-like protein 3 isoform 2 [Otolemur garnettii]
gi|402904299|ref|XP_003914984.1| PREDICTED: ELAV-like protein 3 isoform 2 [Papio anubis]
Length = 359
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|226505274|ref|NP_001145712.1| uncharacterized protein LOC100279216 [Zea mays]
gi|219884125|gb|ACL52437.1| unknown [Zea mays]
Length = 787
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
+A D+++RTV +S++ +T + + LF CG+VVDC + H A+VE++
Sbjct: 332 KADEADALKRTVQISNLSPLLTVDYVKQLFGLCGKVVDCTITDSKH----IAYVEYSKPE 387
Query: 168 GARAAL-----NLGGTMLGYYPVRVLPSK 191
A AAL N+GG L + LPSK
Sbjct: 388 EATAALEFNNKNVGGRPLNVEMAKSLPSK 416
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 103
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P+R P + + +P+ R V+ N+D + + + F +
Sbjct: 104 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFSS 154
Query: 237 ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G + ++ D V S FV+F E+A A++ +GM+L + + V
Sbjct: 155 F--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 175
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVPSF 224
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
VY N+ K++ E+K+ F G+++ ++ D ++R FV F E+A +A+
Sbjct: 225 TNVYVKNLPKEITDDELKKTF--GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 273 -NCSGMVLGSQPIRV 286
+G+ LG + V
Sbjct: 283 EKMNGISLGEDVLYV 297
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+Y+ ++D ++ +E+L +FS G V C+V + + R F FV +++ A A+ +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 390 GKMIGRKPLYV 400
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 103
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P+R P + + +P+ R V+ N+D + + + F +
Sbjct: 104 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFSS 154
Query: 237 ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G + ++ D V S FV+F E+A A++ +GM+L + + V
Sbjct: 155 F--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 175
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVPSF 224
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
VY N+ K++ E+K+ F G+++ ++ D ++R FV F E+A +A+
Sbjct: 225 TNVYVKNLPKEITDDELKKTF--GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 273 -NCSGMVLGSQPIRV 286
+G+ LG + V
Sbjct: 283 EKMNGISLGEDVLYV 297
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+Y+ ++D ++ +E+L +FS G V C+V + + R F FV +++ A A+ +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 390 GKMIGRKPLYV 400
>gi|413947084|gb|AFW79733.1| hypothetical protein ZEAMMB73_180978 [Zea mays]
Length = 787
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
+A D+++RTV +S++ +T + + LF CG+VVDC + H A+VE++
Sbjct: 332 KADEADALKRTVQISNLSPLLTVDYVKQLFGLCGKVVDCTITDSKH----IAYVEYSKPE 387
Query: 168 GARAAL-----NLGGTMLGYYPVRVLPSK 191
A AAL N+GG L + LPSK
Sbjct: 388 EATAALEFNNKNVGGRPLNVEMAKSLPSK 416
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ N+ E +L LFS QVV RVC D + L +A+V F++ A A+ L
Sbjct: 24 SLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMEL 83
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ + + +P+ R+ V+ N+D + +++ F
Sbjct: 84 ----LNFTPLNGKAIRIMVSHRDPSM-------RKSGHANVFIKNLDTSIDNKALQETF- 131
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G V ++ D + S FV+F E+A A+N +GM++ + + V
Sbjct: 132 -ASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVG 184
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
VYV ++ + ++E L FS+ G + V D + F FV F A AA+ L
Sbjct: 204 VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 263
Query: 177 GTMLG---YYPVRVLPSKTAILPVNPTFLPRSEDER-----EMCSRTVYCTNIDKKVPQA 228
GT +Y R + F E ER ++ + +Y N+D K+
Sbjct: 264 GTTFNDKVWYVGRAQRKGEREAELKARF----EQERNSRYEKLKAANLYLKNLDDKIDDE 319
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
++K+ F G +T +++ D ++ FV F+ E A ALN +G ++G +P+ V
Sbjct: 320 KLKELFSEF--GSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 377
Query: 287 S 287
+
Sbjct: 378 A 378
>gi|426387255|ref|XP_004060089.1| PREDICTED: ELAV-like protein 3 isoform 3 [Gorilla gorilla gorilla]
Length = 346
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|395324233|gb|EJF56678.1| RNA-binding protein Prp24 [Dichomitus squalens LYAD-421 SS1]
Length = 1028
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 13/209 (6%)
Query: 95 FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-H 153
+ +KR+ G+ + + T+YV++ + ++ + LF G++ D R
Sbjct: 671 LTKDKKRIRGQEVAVHL--AWKSTLYVTNFPEKADDKFIRTLFGKYGEIFDVRWPSKKFK 728
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
S RF +V+F A AL L GT L K ++ NP D +
Sbjct: 729 STRRFCYVQFTSPTAAEHALELNGTELEE------SHKMSVFISNPERRKERTDS-DADD 781
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILAL 272
R VY + K V + +++ F+ G V +R+ L D S AFVEF A AL
Sbjct: 782 REVYVAGLSKLVTKEDLENLFK--TYGTVKDVRMILDDKGRSKGFAFVEFETENDARAAL 839
Query: 273 NCSGMVLGSQPIRVSPSKTPVRPRVTRPG 301
+ L + + V+ + + VR + PG
Sbjct: 840 AANNHELKQRRMAVTLADSRVRAKNKAPG 868
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 28/164 (17%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TV+V+++ +TE+ L LF CG + + ++ P+S++ A VEF D AAL
Sbjct: 618 TVFVAEMPAGVTEDELRTLFKDCGSIREIKITQLPNSLV--ATVEFMDRESVPAALTKDK 675
Query: 178 TMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
+ V V L K+ T+Y TN +K ++ F
Sbjct: 676 KRIRGQEVAVHLAWKS----------------------TLYVTNFPEKADDKFIRTLF-- 711
Query: 237 ACGGEVTRLRLLGDHVHST-RIAFVEFAVAESAILALNCSGMVL 279
GE+ +R ST R +V+F +A AL +G L
Sbjct: 712 GKYGEIFDVRWPSKKFKSTRRFCYVQFTSPTAAEHALELNGTEL 755
>gi|49355761|ref|NP_001411.2| ELAV-like protein 3 isoform 1 [Homo sapiens]
gi|21264436|sp|Q14576.3|ELAV3_HUMAN RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC; AltName: Full=Paraneoplastic cerebellar
degeneration-associated antigen; AltName:
Full=Paraneoplastic limbic encephalitis antigen 21
gi|119604626|gb|EAW84220.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Homo sapiens]
gi|380783929|gb|AFE63840.1| ELAV-like protein 3 isoform 1 [Macaca mulatta]
Length = 367
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|410967448|ref|XP_003990231.1| PREDICTED: ELAV-like protein 4 [Felis catus]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 119 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 161
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 162 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 219
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 220 EPITVKFANNP 230
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 27/197 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFVEFAD 165
+DS T++V D+ ++T+ L F + +VV R+ G + FV F D
Sbjct: 149 DDSPDHTIFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKG---YGFVRFGD 205
Query: 166 E-HGARAALNLGGTMLGYYPVRVLPS-----KTAILPVNPTFLPR-SEDEREMCSRTVYC 218
E RA + G + P+R+ P+ T P P+ +++E + + T++
Sbjct: 206 ESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFV 265
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILALNCS 275
N+D V ++Q F GE+ +++ R FV+FA AE A+ LN
Sbjct: 266 GNLDPNVTDDHLRQVFGHY--GELVHVKIPA----GKRCGFVQFADRSCAEEALRVLN-- 317
Query: 276 GMVLGSQPIRVSPSKTP 292
G +LG Q +R+S ++P
Sbjct: 318 GTLLGGQNVRLSWGRSP 334
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 109 AQRE-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
AQ E D T++V ++D N+T++ L +F G++V ++ + R FV+FAD
Sbjct: 252 AQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIP----AGKRCGFVQFADRS 307
Query: 168 GARAALN-LGGTMLGYYPVRV 187
A AL L GT+LG VR+
Sbjct: 308 CAEEALRVLNGTLLGGQNVRL 328
>gi|33359635|gb|AAQ17065.1| nucleolin 3 [Cyprinus carpio]
gi|33949944|gb|AAQ55855.1| nucleolin [Cyprinus carpio]
Length = 637
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 24/153 (15%)
Query: 123 DIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLG 181
D D + + +A FS G ++ D RV G +F +V+FA E + AL L G L
Sbjct: 230 DKDFDEIKSAIAKFFSKEGLEIQDVRVGG----TKKFGYVDFASEEELQKALGLNGKKLM 285
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSED-EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG 240
PV++ +K+ S+D ++E SRT++ N+ V Q E+K+ F+ A
Sbjct: 286 GQPVKLDKAKSK---------ENSQDSKKERDSRTLFVKNLPYSVTQEELKEIFDQAV-- 334
Query: 241 EVTRLRLLGDHVHSTR-IAFVEF---AVAESAI 269
+ H S+R IA++EF A+AE A+
Sbjct: 335 ---DIPDTDGHSGSSRGIAYLEFKSEAIAEKAM 364
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D++ N+T+ +L LF+ GQVV RVC D + L + +V +++ + A A+
Sbjct: 39 SLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAME- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + PV + +PT R+ S ++ N+DK + + F
Sbjct: 98 ---MLNFTPVNGKSIRVMYSHRDPTL-------RKSGSANIFIKNLDKSIDNKALHDTFS 147
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
+ G + ++ D + S FV++ ESA A++ +GM++ + + V
Sbjct: 148 SF--GNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYV 198
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR---KRLSGRAFRAQREDSVRRTV--- 119
F IN A+D + A+++ N + + G+ K + +++ E + + V
Sbjct: 259 FGFINFETAEDAAK-AVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKY 317
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAA 172
YV ++D I +E+L LFS G + C+V DP + R + FV F+ E +RA
Sbjct: 318 QGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 377
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 378 SEMNGKMIVSKPLYV 392
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR----FAFVEFADEHGARAAL 173
++YV D+ ++TE L +F++ G V RVC D SV R +A+V + A AAL
Sbjct: 28 SLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRD--SVTRKSLGYAYVNYYSTQDAEAAL 85
Query: 174 -NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
+L + +P R++ S R R + ++ N+DK + + K
Sbjct: 86 ESLNYIEIKGHPTRIMWSN------------RDPSLRRSGAGNIFVKNLDKSI---DTKS 130
Query: 233 FFEA-ACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
++ + G + ++ D S R FV + ESA A+ +GM++G + + V+P
Sbjct: 131 LYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAP 189
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF-ADEHGARAALNLG 176
VY+ + ++ +ERL G+FS G+ + +V D + F FV F + E RA +
Sbjct: 192 VYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMN 251
Query: 177 GTMLGYYPVRVLPSKTAI---LPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAEVKQ 232
G + V V ++ + + F ++ C +Y N+D V ++++
Sbjct: 252 GKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLRK 311
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291
F + G +TR++++ + +S + F+ E A AL +G VLGS+ + ++ ++
Sbjct: 312 EFSSF--GSITRVKVMKEEGYSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSIALAQR 369
Query: 292 P 292
P
Sbjct: 370 P 370
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ TE+ L FS+ G V+ R+C D L +A+V F A+ AL+
Sbjct: 11 SLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-----TVYCTNIDKKVPQAE 229
+ ++ P+R++ S +R+ C R V+ N+D+ V
Sbjct: 71 MNFDVIKGRPIRLMWS-----------------QRDACLRRSGIGNVFVKNLDRSVDNKT 113
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ + F G++ +++ D S AFV F +A A+ +G V+ +P+ V+P
Sbjct: 114 LYEHFSGF--GKILSSKVMSDDQGSKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAP 171
Query: 289 SKTPVRPRVTR 299
K PR R
Sbjct: 172 FK----PRKDR 178
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +RR+ V+V ++D+++ + L FS G+++ +V D +AF
Sbjct: 82 RLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQGSKGYAF 141
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G ++ PV V P F PR + E E+ SR
Sbjct: 142 VHFQSQSAANCAIEQMNGKVINDRPVFVAP-----------FKPRKDREAELRSRASEFT 190
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL- 272
VY N + ++ F G+ ++++ D ++ FV F E+A A+
Sbjct: 191 NVYIKNFGDDMDDERLQGVFSRY--GKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVE 248
Query: 273 NCSGMVLGSQPIRVSPSKTPV 293
+G + Q + V ++ V
Sbjct: 249 EMNGKDMNGQLVFVGRAQKKV 269
>gi|301771944|ref|XP_002921434.1| PREDICTED: ELAV-like protein 3-like [Ailuropoda melanoleuca]
Length = 350
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 38 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 97
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 98 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 143
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 144 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 201
Query: 285 RVSPSKTP 292
V + P
Sbjct: 202 TVKFANNP 209
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD- 61
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+ + P++ P + +P+ R+ V+ N+DKK+ + F
Sbjct: 62 ---TMNFDPIKGRPIRIMWSQRDPSL-------RKSGVGNVFIKNLDKKIDNKAMYDTFS 111
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D ++ FV F ESA ++ +GM+L + + V
Sbjct: 112 AF--GNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYV 162
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG 177
VYV + +++TEE L +F G + RV F FV F A A+ L G
Sbjct: 185 VYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSRGFGFVAFEKPEDAEEAVQKLNG 244
Query: 178 TMLG----YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAE 229
L Y R + + F + + E +R +Y N+D +
Sbjct: 245 KELSDGKVLYVGRAQKKNERQMELKRRF---EQLKMERLTRYHGVNLYVKNLDDTIDDER 301
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+++ F A G +T +++ D S FV F+ + A A+ +G ++GS+P+ V+
Sbjct: 302 LRKEF--APYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVA 358
>gi|125548504|gb|EAY94326.1| hypothetical protein OsI_16094 [Oryza sativa Indica Group]
Length = 426
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+++V D+ ++T+E L LF++ + V +V D ++ + FV F D++ A+
Sbjct: 198 SIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMT 257
Query: 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ G P+R+ P+ + + + +RTVY +D V + E+++
Sbjct: 258 EMNGAYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKA 317
Query: 234 FEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
F A G+V +++ LG + FV AE A+ LN G V+G Q +R+S ++P
Sbjct: 318 F--AKYGDVASVKIPLGKQC--GFVQFVSRTDAEEALQGLN--GSVIGKQAVRLSWGRSP 371
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS RTVYV +D N++E+ L F+ G V ++ CG FV+F
Sbjct: 294 DSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCG---------FVQFVSRT 344
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A AL L G+++G VR+
Sbjct: 345 DAEEALQGLNGSVIGKQAVRL 365
>gi|116310076|emb|CAH67097.1| H0818E04.14 [Oryza sativa Indica Group]
Length = 426
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+++V D+ ++T+E L LF++ + V +V D ++ + FV F D++ A+
Sbjct: 198 SIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMT 257
Query: 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ G P+R+ P+ + + + +RTVY +D V + E+++
Sbjct: 258 EMNGAYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKA 317
Query: 234 FEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
F A G+V +++ LG + FV AE A+ LN G V+G Q +R+S ++P
Sbjct: 318 F--AKYGDVASVKIPLGKQC--GFVQFVSRTDAEEALQGLN--GSVIGKQAVRLSWGRSP 371
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS RTVYV +D N++E+ L F+ G V ++ CG FV+F
Sbjct: 294 DSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCG---------FVQFVSRT 344
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A AL L G+++G VR+
Sbjct: 345 DAEEALQGLNGSVIGKQAVRL 365
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 121
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T + P R++ S+ R R+ V+ N+D + + F
Sbjct: 122 LNYTSIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 169
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
G + ++ D + +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 170 SQF--GNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVG 222
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L FS G ++ C+V D + +
Sbjct: 133 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYG 192
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + R EM + VY
Sbjct: 193 FVHYETAEAANQAIKSVNGML-------LNDKKVFVGHHIAKRDRQSKLEEMKANFTNVY 245
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID+ V E + FE GEV + D +R FV FA ESA A+
Sbjct: 246 IKNIDESVSDEEFTKLFEPY--GEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
>gi|326517609|dbj|BAK03723.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 990
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
A++ +++++ V +S++ +T E + LF CG+VVDC + H A+VE++
Sbjct: 357 AEKAEALKKIVQISNLSPVLTVENIKQLFGYCGKVVDCTITESKH----IAYVEYSKPEE 412
Query: 169 ARAALNLGGTMLGYYPVRV-----LPSKTAILPVN 198
A AAL L +G P+ V LP KT+I N
Sbjct: 413 ATAALALSNVDVGGRPLNVEMAKSLPQKTSIANSN 447
>gi|357473909|ref|XP_003607239.1| RNA-binding protein [Medicago truncatula]
gi|355508294|gb|AES89436.1| RNA-binding protein [Medicago truncatula]
Length = 635
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+S +T++V ++ ++ + F CG+VVD R D + F VEFA A+
Sbjct: 371 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 430
Query: 171 AALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+AL + G L VR + + A P N + R S+TV+ DK + +
Sbjct: 431 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 489
Query: 229 EVK----QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAVAESAILAL 272
E++ + F C GE TR+ + D +S A+++F ++S AL
Sbjct: 490 EIRAKLMEHFGGTC-GEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 538
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VY+ + ++ +ERL +FS G+ + +V D + F FV F A+ A+
Sbjct: 192 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
++ G +L + + A L L R E R +Y N+D+ + +++
Sbjct: 252 GKDINGQLLFVGRAQKKAERQAELKQMFEQLKR-ERFRRCQGVKLYIKNLDETIDDEKLR 310
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290
+ F + G ++R++++ + S + F+ E A A+ +G +LGS+P+ ++ ++
Sbjct: 311 REFSSF--GSISRVKVMQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQ 368
Query: 291 TP 292
P
Sbjct: 369 KP 370
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L FS+ G V+ R+C D L +A+V F A+ AL+
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ +R++ S+ R R+ V+ N+DK + + + F
Sbjct: 71 MNFDLIKGKSIRLMWSQ------------RDAYLRKSGIGNVFIKNLDKSIDNKTLYEHF 118
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILALN 273
A G++ +++ D S AFV F A+ AI +N
Sbjct: 119 SAF--GKILSSKVMSDDQGSRGYAFVHFQNQIAADRAIEEMN 158
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P+R P + + +P+ R V+ N+D + + + F +
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFSS 168
Query: 237 ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G + ++ D V ++ FV+F E+A A++ +GM+L + + V
Sbjct: 169 F--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 130 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 189
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 190 FVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVPSF 238
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
VY N+ K++ E+K+ F G+++ ++ D ++R FV F E+A +A+
Sbjct: 239 TNVYVKNLPKEITDDELKKTF--GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 273 -NCSGMVLGSQPIRV 286
+G+ LG + V
Sbjct: 297 EKMNGISLGEDVLYV 311
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+Y+ ++D ++ +E+L +FS G V C+V + + R F FV +++ A A+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 404 GKMIGRKPLYV 414
>gi|359067089|ref|XP_002688919.2| PREDICTED: ELAV-like protein 3 [Bos taurus]
Length = 408
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 83 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 142
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 143 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 188
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 189 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 246
Query: 285 RVSPSKTP 292
V + P
Sbjct: 247 TVKFANNP 254
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A++ + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
VY N + + +K+ F G ++ + D S FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEMF-GKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVD 249
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A A++ + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
R VY N + +K+ F G ++ + D+ S FV F E A
Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244
Query: 269 ILALN 273
A++
Sbjct: 245 QKAVD 249
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A A++ + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
R VY N + +K+ F G ++ + D+ S FV F E A
Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244
Query: 269 ILALN 273
A++
Sbjct: 245 QKAVD 249
>gi|296485880|tpg|DAA27995.1| TPA: ELAV-like protein 3-like [Bos taurus]
Length = 407
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 82 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 141
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 142 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 187
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 188 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 245
Query: 285 RVSPSKTP 292
V + P
Sbjct: 246 TVKFANNP 253
>gi|281337375|gb|EFB12959.1| hypothetical protein PANDA_010283 [Ailuropoda melanoleuca]
Length = 369
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 32 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 91
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 92 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 137
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 138 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 195
Query: 285 RVSPSKTP 292
V + P
Sbjct: 196 TVKFANNP 203
>gi|357473911|ref|XP_003607240.1| RNA-binding protein [Medicago truncatula]
gi|355508295|gb|AES89437.1| RNA-binding protein [Medicago truncatula]
Length = 623
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+S +T++V ++ ++ + F CG+VVD R D + F VEFA A+
Sbjct: 359 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 418
Query: 171 AALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+AL + G L VR + + A P N + R S+TV+ DK + +
Sbjct: 419 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 477
Query: 229 EVK----QFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAVAESAILAL 272
E++ + F C GE TR+ + D +S A+++F ++S AL
Sbjct: 478 EIRAKLMEHFGGTC-GEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 526
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K N+ K E EFT + L DMF + S F+ +N D K+
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAAL-SVGEDGLSKGFAFVNYTTHDAAKK- 293
Query: 81 AIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT----------------VYVSD 123
A+D N+ G+K GRA RA+R++ +RR +YV +
Sbjct: 294 AVDELNDKEI------NGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKN 347
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG 181
ID ++RL F G + +V D R F FV F+ + RA + G M+G
Sbjct: 348 IDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIG 407
Query: 182 YYPVRV 187
P+ V
Sbjct: 408 TKPLYV 413
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD- 165
Q++ ++YV ++D ++TE L +F+ G V RVC D L +A+V + +
Sbjct: 49 GQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNA 108
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
G RA +L +++ P R++ S+ R R+ ++ N+D K+
Sbjct: 109 ADGERALEHLNYSLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDDKI 156
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ F A G + ++ D ++R AFV + E+A A+ + +GM+L +
Sbjct: 157 DNKALHDTF--AAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKK 214
Query: 284 IRVS 287
+ V
Sbjct: 215 VYVG 218
>gi|297602825|ref|NP_001052934.2| Os04g0449900 [Oryza sativa Japonica Group]
gi|255675510|dbj|BAF14848.2| Os04g0449900 [Oryza sativa Japonica Group]
Length = 387
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+++V D+ ++T+E L LF++ + V +V D ++ + FV F D++ A+
Sbjct: 159 SIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMT 218
Query: 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ G P+R+ P+ + + + +RTVY +D V + E+++
Sbjct: 219 EMNGAYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKA 278
Query: 234 FEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
F A G+V +++ LG + FV AE A+ LN G V+G Q +R+S ++P
Sbjct: 279 F--AKYGDVASVKIPLGKQC--GFVQFVSRTDAEEALQGLN--GSVIGKQAVRLSWGRSP 332
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS RTVYV +D N++E+ L F+ G V ++ CG FV+F
Sbjct: 255 DSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCG---------FVQFVSRT 305
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A AL L G+++G VR+
Sbjct: 306 DAEEALQGLNGSVIGKQAVRL 326
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A A++ + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
R VY N + +K+ F G ++ + D+ S FV F E A
Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244
Query: 269 ILALN 273
A++
Sbjct: 245 QKAVD 249
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A++ + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
VY N + + +K++F G ++ + DH S FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 51 KEFFPSY-----YHQHTDHHFSVINNNFAD----DNKQSAIDNFNNNRRRRNNFNQGRKR 101
KE+F Y TD H F ++ Q A+D+ N GR +
Sbjct: 208 KEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQ 267
Query: 102 LS-------GRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
R F ++D + R +YV ++D I +ERL F+ G + +V
Sbjct: 268 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM 327
Query: 151 DPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ F FV F+ E +A + G ++ P+ V
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ N+ + +L LF+ GQVV RVC D + L + +V F + A A
Sbjct: 30 VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 89
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T + +RV+ S R R+ + ++ N+DK + +
Sbjct: 90 LDVLNFTPMNNKSIRVMYSH------------RDPSSRKSGTANIFIKNLDKTIDHKALH 137
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
F + G++ ++ D S FV+F +SA A++ +GM++ + + V
Sbjct: 138 DTFSSF--GQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR--------KRLSGRAFRAQREDSVRR 117
F +N A+D + A++ N + + G+ + L GR + +E V +
Sbjct: 253 FGFVNFENAEDAAK-AVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDK 311
Query: 118 ----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARA 171
+Y+ ++D +IT+E+L +FS G + ++ DP+ V R + FV F+ E +RA
Sbjct: 312 FQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRA 371
Query: 172 ALNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 372 LGEMNGKMIVSKPLYV 387
>gi|292616346|ref|XP_002662984.1| PREDICTED: polyadenylate-binding protein 2-B-like [Danio rerio]
gi|292616348|ref|XP_002662985.1| PREDICTED: polyadenylate-binding protein 2-B-like [Danio rerio]
Length = 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFA 164
+R DS RR++YV ++D T + L F+SCG V R G P FA++EF+
Sbjct: 30 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 86
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
D R A+ L T+ ++V P +T I
Sbjct: 87 DRESVRTAMALDETLFRGRVIKVSPKRTNI 116
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-L 175
RT++V ++D IT+E LA LF+ G V +VC D + FAF+EF D + A AL +
Sbjct: 37 RTLFVGNLDPAITDEFLATLFNQIGAVTKAKVCFDGMNDP-FAFIEFGDHNQAGQALQAM 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
G L +RV A+ P + E R V+ ++ +V ++++ F
Sbjct: 96 NGRSLLDREMRV---NWAVDASQPGDSRKQETSRHFH---VFVGDLSSEVDSTKLREAFL 149
Query: 236 AACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G+V+ +++ D + FV + E A A+ +G LG + IR
Sbjct: 150 AF--GDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRT 201
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K N+ K E EFT + L DMF + S F+ +N D K+
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAAL-SVGEDGLSKGFAFVNYTTHDAAKK- 293
Query: 81 AIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT----------------VYVSD 123
A+D N+ G+K GRA RA+R++ +RR +YV +
Sbjct: 294 AVDELNDKEI------NGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKN 347
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG 181
ID ++RL F G + +V D R F FV F+ + RA + G M+G
Sbjct: 348 IDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIG 407
Query: 182 YYPVRV 187
P+ V
Sbjct: 408 TKPLYV 413
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD- 165
Q++ ++YV ++D ++TE L +F+ G V RVC D L +A+V + +
Sbjct: 49 GQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNA 108
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
G RA +L +++ P R++ S+ R R+ ++ N+D K+
Sbjct: 109 ADGERALEHLNYSLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDDKI 156
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ F A G + ++ D ++R AFV + E+A A+ + +GM+L +
Sbjct: 157 DNKALHDTF--AAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKK 214
Query: 284 IRVS 287
+ V
Sbjct: 215 VYVG 218
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 15/222 (6%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRT-VYVSDIDQNITEERLA 134
DN QSA + R N +K G R Q S + T VYV ++ ++ T E L
Sbjct: 161 DNDQSAKNAIEKLDGRLMN---DKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNEDLK 217
Query: 135 GLFSSCGQVVDCRVCGDPHS-VLRFAFVEF-ADEHGARAALNLGGTMLGYYPVRVL---P 189
LF++ G + ++ D + RF FV F + + A A L G+ V +
Sbjct: 218 QLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQ 277
Query: 190 SKTAILPVNPTFLPRSEDER--EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL 247
K+ F + + +R + +Y NIDK + + ++K+ F G +T ++
Sbjct: 278 KKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEF--GTITSCKV 335
Query: 248 LGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+ D S + FV F E A A++ +G ++G +P+ VS
Sbjct: 336 MSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVS 377
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-N 174
++YV D+ N+ + +L LFS V+ RVC D S L + +V +++ A A+ N
Sbjct: 26 SLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMEN 85
Query: 175 LGGTMLGYYPVRVL 188
L L P+R++
Sbjct: 86 LNYVPLNGKPIRIM 99
>gi|217074578|gb|ACJ85649.1| unknown [Medicago truncatula]
gi|388499396|gb|AFK37764.1| unknown [Medicago truncatula]
Length = 365
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 104 GRAFRAQRE--------DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV 155
GR FR ++E + +RTV+ + TE + FS G+V D R+ D +S
Sbjct: 181 GRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 240
Query: 156 LR--FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA--ILPVNPTFLPRSEDEREM 211
++EF D A+ L G +L PV V PS+ ++ N +
Sbjct: 241 RSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGA 300
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
R +Y N+ + +A +++ FE EV +L L + H FV+FA E A A
Sbjct: 301 VDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA 360
Query: 272 LNCSG 276
+ +G
Sbjct: 361 QSLNG 365
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFV 260
P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S + ++
Sbjct: 193 PEADPERDQ--RTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYI 248
Query: 261 EFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
EF A S +A+ SG +L QP+ V PS+
Sbjct: 249 EFYDAMSVPMAIALSGQLLLGQPVMVKPSEA 279
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VY+ + ++ +ERL +FS G+ + +V DP + F FV F + A+ A+
Sbjct: 192 VYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMN 251
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAEV 230
++ G ++ + R + F + + C +Y N+D + ++
Sbjct: 252 GKDINGQLI--FVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKL 309
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289
++ F + G ++R++++ + S + F+ E A A+ +G +LGS+P+ ++ S
Sbjct: 310 RKEFSSF--GSISRVKVMQEEGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALS 367
Query: 290 K 290
+
Sbjct: 368 Q 368
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 30/167 (17%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L FS+ G V+ R+C D L +A+V F A+ AL+
Sbjct: 11 SLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-----VYCTNIDKKVPQAE 229
+ M+ +R++ S +R+ C R V+ N+D+ +
Sbjct: 71 MNFDMIKGKSIRLMWS-----------------QRDACLRKSGIGNVFIKNLDRSIDNKT 113
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALN 273
+ + F A G++ +++ D S AFV F + A+ AI +N
Sbjct: 114 LYEHFSAF--GKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L +F+ GQVV RVC D + L + +V +++ A A
Sbjct: 10 VPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 69
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ ++ N+DK + +
Sbjct: 70 LDVLNFTPLNNKPIRIMYSH------------RDPSIRKSGMANIFIKNLDKGIDHKALH 117
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F + G + ++ D ++ FV+F E+A A++ +GM++ + + V
Sbjct: 118 DTFSSF--GNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVG 173
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAF--RAQREDSVRRTV--- 119
F +N ADD + A++ N + + G+ ++ S R + + E S++ TV
Sbjct: 233 FGFVNFESADDAAK-AVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKF 291
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
Y+ ++D +I +E+L LFS G + C+V DP + R + FV F+ E +RA
Sbjct: 292 QGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 351
Query: 173 LNLGGTMLGYYPVRV 187
+ G ML P+ V
Sbjct: 352 AEMNGKMLISKPLYV 366
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 29/179 (16%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFADEHGARAA 172
T+YV IDQ +T+E L LFS CG VV+ ++ G+ + FVEF E A +
Sbjct: 13 TIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQG---YGFVEFKSEEDADYS 69
Query: 173 LNLGGTMLGY-YPVRVLPSKTAILPVNPTFLPRSEDER-EMCSRTVYCTNIDKKVPQAEV 230
+ + + Y P++V + S+D+R + ++ N+D+ + + ++
Sbjct: 70 IKIMHLVKLYGKPIKVNKA--------------SQDKRTQEVGANIFIGNLDQSITEQQL 115
Query: 231 KQFFEAACGGEVTRLRLL--GDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRV 286
F G + R++ D+ S AFV + E+A A+N +G GS+ I V
Sbjct: 116 HDTFSQF--GLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAINTMNGQFFGSKKINV 172
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 101 RLSGRAFRAQREDSVRRT------VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+L G+ + + +RT +++ ++DQ+ITE++L FS G ++ R+ DP +
Sbjct: 77 KLYGKPIKVNKASQDKRTQEVGANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDN 136
Query: 155 --VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+AFV + + A AA+N + G G + V
Sbjct: 137 DESKGYAFVSYDNFEAADAAINTMNGQFFGSKKINV 172
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+D +ITE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ + P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 73 MNFDTIKGKPMRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKAIYDTF 120
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D S++ FV F E+A A+ +GM+L + + V
Sbjct: 121 SAF--GNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYV 172
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 32/198 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D H
Sbjct: 82 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG 141
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
+ FV F E AR A+ ML L K + F+ R E + +
Sbjct: 142 SRGYGFVHFETEEAARIAIEKVNGML-------LNGKKVFV---GRFMSRRERLEVLGDK 191
Query: 215 T-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-----HVHSTRIAFVEFAV 264
VY N +++ ++ FE G++ +++ D ++F +
Sbjct: 192 MRKFNNVYVKNFSEEINDETLRDMFEPY--GKIISAKVMTDDGSGKGKGFGFVSFEDPEA 249
Query: 265 AESAILALNC---SGMVL 279
AE A+ ALN SG +L
Sbjct: 250 AEKAVEALNGNDNSGKIL 267
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ + P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 77 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 124
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + +++ D S FV F E+A +A+ +GM+L + + V
Sbjct: 125 SAF--GNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVG 176
>gi|225449617|ref|XP_002279438.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|296086279|emb|CBI31720.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 11/182 (6%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADE 166
+Q VYV I TE+ + F SCG + VDC + + A + F E
Sbjct: 174 SQENGDASNKVYVGGIPYYSTEDDIRSYFDSCGTITEVDCMMFPESGKFRGIAIISFKTE 233
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKK 224
A+ AL L G +G +++ P KT + F P EM +Y N+
Sbjct: 234 AAAKRALALDGADMGGLFLKIQPYKTTRANKSSDFAP------EMVEGYNRIYVGNLPWD 287
Query: 225 VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPI 284
+ + EV++FF + C R + + A V+F+ S +AL ++ +P
Sbjct: 288 ITEDEVRKFF-SRCNVSSIRFGMDKETQEFRGYAHVDFSDNPSLTMALKLDQEIVCGRPA 346
Query: 285 RV 286
++
Sbjct: 347 KI 348
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 26/183 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYG 133
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
FV F E A ++ ML L K + F+ R + E+E+ +
Sbjct: 134 FVHFDMEQSATQSIEKVNGML-------LNGKKVFVG---RFVGRKDREKELGQKAKLFT 183
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAIL 270
VY NID+ V E+ + FE G +T +++ S+R +AF + AE A+
Sbjct: 184 NVYIKNIDENVNDKELFEMFEKY--GSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVS 241
Query: 271 ALN 273
L+
Sbjct: 242 ELH 244
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G VV RVC D L +A+V F + A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 63 MNFEILNGCPMRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTF 110
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D S FV F + +SA ++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFV 162
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGQPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N ++ ++++ F G +R++ D +R FV F E A A++
Sbjct: 192 NVYIKNFGDEMDDEKLRELFSKY--GNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>gi|23271926|gb|AAH36071.1| ELAVL4 protein [Homo sapiens]
Length = 366
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++Q F + G +T L+G +R + F+ F AE AI LN ++PI
Sbjct: 148 LEQLF-SQYGRIITSRILVGQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 286 VSPSKTP 292
V + P
Sbjct: 207 VKFANNP 213
>gi|189521749|ref|XP_001923043.1| PREDICTED: polyadenylate-binding protein 2-B-like isoform 1 [Danio
rerio]
Length = 192
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFA 164
+R DS RR++YV ++D T + L F+SCG V R G P FA++EF+
Sbjct: 59 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 115
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
D R A+ L T+ ++V P +T I
Sbjct: 116 DRESVRTAMALDETLFRGRVIKVSPKRTNI 145
>gi|449448446|ref|XP_004141977.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
Length = 598
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+RTV+ + TE + FS G+V D R+ D +S +VEF D A+
Sbjct: 230 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAI 289
Query: 174 NLGGTMLGYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L G +L PV V PS+ L + T R +Y N+ + + +++
Sbjct: 290 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLRE 349
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSG-MVLGSQPIRVS 287
FEA E+ +L L + H FV+FA E A A + +G + + + I+VS
Sbjct: 350 IFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVS 405
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRI 257
T P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S +
Sbjct: 219 TTEPEADPERDQ--RTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGV 274
Query: 258 AFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
+VEF A S +A+ SG +L QP+ V PS+
Sbjct: 275 GYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 307
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGQPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N ++ ++++ F G +R++ D +R FV F E A A++
Sbjct: 192 NVYIKNFGDEMDDEKLRELFSKY--GNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>gi|357163840|ref|XP_003579863.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 428
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFA-DEHGARAAL 173
+++V D+ ++T+E L LF+S + V +V D ++ + FV F D +RA
Sbjct: 198 SIFVGDLAADVTDEMLMELFASKYRSVKGAKVIIDANTGRSRGYGFVRFGEDSDKSRAMT 257
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ G P+R+ P+ + + + +RTVY +D V + E+++
Sbjct: 258 EMNGVYCSTRPIRIGPATPRRTAGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKS 317
Query: 234 FEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSPSK 290
F A G+V +++ + FV++ AE A+ LN G V+G Q +R+S +
Sbjct: 318 F--AKYGDVASVKI----PQGKQCGFVQYVNRTDAEEALQGLN--GSVIGKQAVRLSWGR 369
Query: 291 TP 292
+P
Sbjct: 370 SP 371
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS RTVYV +D N++E+ L F+ G V ++ CG FV++ +
Sbjct: 294 DSTNRTVYVGGLDPNVSEDELRKSFAKYGDVASVKIPQGKQCG---------FVQYVNRT 344
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A AL L G+++G VR+
Sbjct: 345 DAEEALQGLNGSVIGKQAVRL 365
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 31/203 (15%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
E + + V+ + Q +TEE L LFS G V+ C++ D S L + FV + A
Sbjct: 19 ETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSAEEA 78
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+ + GT L ++V PS AI N VY N+ ++
Sbjct: 79 EHAIQKMNGTTLESKTLKVSYARPSSVAIKNAN-----------------VYVANLPPQL 121
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGS 281
E+ F+ G +T L + + R + FV F AE AI ALN +V G+
Sbjct: 122 SLTELDALFQ-PYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNGKQLVGGT 180
Query: 282 QPIRV---SPSKTPVRPRVTRPG 301
QP+ V +P K T PG
Sbjct: 181 QPLLVKFANPPKAATPLTGTVPG 203
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 120 SAF--GNILSCKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 171
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
+ ++YV D+ ++E+ L +F+ G V + RVC D ++ L +A+V + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L P+R + +P+ R+ V+ N+DK + +
Sbjct: 68 LD----TLNNTPIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGIDHKALYD 116
Query: 233 FFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
F A G + +++ D +S++ FV + ESA A+ +GM++ Q + V P K
Sbjct: 117 TFSAF--GNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFK 174
Query: 291 T 291
+
Sbjct: 175 S 175
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 98 GRKRLSGRAFRA-QREDSVRRT---------VYVSDIDQNITEERLAGLFSSCGQVVDCR 147
G+ +GRA + +RE ++ T +Y+ +ID +I ++L +FS G +
Sbjct: 255 GKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAI 314
Query: 148 VCGDPHSVLR--FAFVEF-ADEHGARAALNLGGTMLGYYPVRV 187
V D + F FV + A + RA + G M+G P+ V
Sbjct: 315 VMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L LF+ QVV R+C D L + +V F++ A A+++
Sbjct: 25 SLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDV 84
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P L KT + + R R+ + V+ N+DK + + F
Sbjct: 85 ----LNFTP---LNGKT----IRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFS 133
Query: 236 AACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ D ++ FV+F ESA A++ +GM++ + + V P
Sbjct: 134 AF--GNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGP 186
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 72 NFAD-DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA---------FRAQREDSVRRTV-- 119
NFA+ ++ A++ N NF+ G++ G+A + + E S + TV
Sbjct: 249 NFANVEDAAKAVEALNGK-----NFD-GKEWYVGKAQKKSERELELKERNEQSTKETVDK 302
Query: 120 ------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAA 172
Y+ ++D ++ +E L LFS G + C+V DP + R + FV F+ GA A
Sbjct: 303 YHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWA 362
Query: 173 LN-LGGTMLGYYPVRV 187
L + G M+ P+ V
Sbjct: 363 LGEMNGKMVAGKPLYV 378
>gi|147856399|emb|CAN82467.1| hypothetical protein VITISV_002664 [Vitis vinifera]
Length = 461
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQRE--------DSVRRTVYVSDIDQNITEERLAGLFS 138
+ + RR + G + GR F+ ++E + +RTV+ + TE + FS
Sbjct: 58 HEKDRRRSGRDGERESKGRRFKDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFS 117
Query: 139 SCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA--I 194
G+V D R+ D +S ++EF D A+ L G +L PV V PS+ +
Sbjct: 118 KAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGHLLHGQPVMVKPSEAEKNL 177
Query: 195 LPVNPTFLPRS--EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV 252
+ N + R +Y N+ + + +++Q FE E+ +L L +
Sbjct: 178 VQSNASGAVSGGIAGPYGAVDRKLYVGNLHFNMTELQLRQIFEPFGRVELVQLPLDLETG 237
Query: 253 HSTRIAFVEFAVAESAILALNCSGMV-LGSQPIRVS 287
FV+FA E A A N +G + + + I+VS
Sbjct: 238 QCKGFGFVQFAELEHAKAAQNLNGKLDIAGRIIKVS 273
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFV 260
P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S + ++
Sbjct: 87 PEADPERD--QRTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGVGYI 142
Query: 261 EFAVAESAILALNCSGMVLGSQPIRVSPSKT 291
EF A S +A+ SG +L QP+ V PS+
Sbjct: 143 EFYDAMSVPMAIALSGHLLHGQPVMVKPSEA 173
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A RA + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAES 267
R VY N + + ++K F G +R++ D +R FV F E
Sbjct: 186 RAKEFTNVYIKNFGEDMDDDKLKDIFSKY--GNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 268 AILALN 273
A A++
Sbjct: 244 AQRAVD 249
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V D F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>gi|449497695|ref|XP_004160482.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
Length = 598
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+RTV+ + TE + FS G+V D R+ D +S +VEF D A+
Sbjct: 230 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAI 289
Query: 174 NLGGTMLGYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L G +L PV V PS+ L + T R +Y N+ + + +++
Sbjct: 290 ALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLRE 349
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSG-MVLGSQPIRVS 287
FEA E+ +L L + H FV+FA E A A + +G + + + I+VS
Sbjct: 350 IFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVS 405
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRI 257
T P ++ ER+ RTV+ + K + +V +FF A G+V +RL+ D S +
Sbjct: 219 TTEPEADPERDQ--RTVFAYQMPLKATERDVYEFFSKA--GKVRDVRLIMDRNSRRSKGV 274
Query: 258 AFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
+VEF A S +A+ SG +L QP+ V PS+
Sbjct: 275 GYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 307
>gi|225429862|ref|XP_002283326.1| PREDICTED: nucleolysin TIAR [Vitis vinifera]
Length = 436
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 89/226 (39%), Gaps = 47/226 (20%)
Query: 109 AQRED-SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR---FAFVEFA 164
QRED S ++V D+ +T+ L FS D RV D H R + FV F
Sbjct: 134 GQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWD-HKTGRSKGYGFVSFR 192
Query: 165 DEHGARAALN-LGGTMLGYYPVR---------------VLPSKTAILPVNPTFLPRSEDE 208
++ A++A+N L G LG +R V ++ A++ N + E+
Sbjct: 193 NQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGSQENT 252
Query: 209 REMCSR------TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
E TVY N+ +V QAE+ F A G + +R+ D FV +
Sbjct: 253 NEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRIQRD----KGFGFVRY 308
Query: 263 AVAESAILA-------------LNCSGMVLGSQPIRVSPSKTPVRP 295
E A LA + CS GS+P + + P+ P
Sbjct: 309 HTHEEAALAIQMANGRIVRGKSMKCS---WGSKPTPLGTASNPLPP 351
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+ S R+VYV +I N+TE+ LA +F S G + C++ S + FV++ D A
Sbjct: 53 DSSSCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKS--SYGFVDYLDRASASL 110
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVYCTNIDKKVPQAE 229
A+ T+ G R + + L VN + + +RE S ++ ++ +V A
Sbjct: 111 AIM---TLHG----RQVYGQA--LKVNWAY---ASGQREDTSGHFNIFVGDLSPEVTDAT 158
Query: 230 VKQFFE--AACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPI 284
+ F A+C + R++ DH S FV F + A A+N SG LG++ I
Sbjct: 159 LYACFSVFASC----SDARVMWDHKTGRSKGYGFVSFRNQQDAQSAINDLSGKWLGNRQI 214
Query: 285 R 285
R
Sbjct: 215 R 215
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L F G VV RVC D L + +V F + + ARA
Sbjct: 21 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 80
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R + ++ N+D+ + + F
Sbjct: 81 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 128
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G + ++ D S FV++A ESA A+ +GM+L + + V P
Sbjct: 129 SSF--GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 182
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 241 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 299
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+YV ++D +I++E+L +FS G V +V DP+ + + FV FA E A
Sbjct: 300 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 359
Query: 173 LNLGGTMLGYYPVRV 187
L G M+ P+ V
Sbjct: 360 SQLSGKMIESKPLYV 374
>gi|542846|pir||JC2116 hippocampal 38K autoantigen protein - human
gi|2340828|dbj|BAA21838.1| PLE21 protein [Homo sapiens]
Length = 350
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 26 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 85
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 86 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 131
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + +PI
Sbjct: 132 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAREPI 189
Query: 285 RVSPSKTP 292
V + P
Sbjct: 190 TVKFANNP 197
>gi|222628961|gb|EEE61093.1| hypothetical protein OsJ_14988 [Oryza sativa Japonica Group]
Length = 373
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+++V D+ ++T+E L LF++ + V +V D ++ + FV F D++ A+
Sbjct: 145 SIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMT 204
Query: 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
+ G P+R+ P+ + + + +RTVY +D V + E+++
Sbjct: 205 EMNGAYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKA 264
Query: 234 FEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292
F A G+V +++ LG + FV AE A+ LN G V+G Q +R+S ++P
Sbjct: 265 F--AKYGDVASVKIPLGKQC--GFVQFVSRTDAEEALQGLN--GSVIGKQAVRLSWGRSP 318
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS RTVYV +D N++E+ L F+ G V ++ CG FV+F
Sbjct: 241 DSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCG---------FVQFVSRT 291
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A AL L G+++G VR+
Sbjct: 292 DAEEALQGLNGSVIGKQAVRL 312
>gi|391332510|ref|XP_003740677.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 341
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ ++ ++L F+ G++ DCRV DP + + FV F + A A+N +
Sbjct: 50 IFVGDLSSDVETQQLREAFTPFGEISDCRVVRDPQTQKSKGYGFVSFLRKQDAETAINAM 109
Query: 176 GGTMLGYYPVRVLPSKTAI-LPVN--------------PTFLPRSEDE----REMCSRTV 216
G LG RV+ + A P + P + P + DE + TV
Sbjct: 110 NGQWLG---GRVIRTNWATRRPASNANNQQEGSQGNSTPKYTPLTFDEVYNQASPTNCTV 166
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
YC + + + + +++ F + G + +R+ D + AFV FA ESA A+
Sbjct: 167 YCGGLGQGLSEELIQKTFSSY--GIIQEIRVFKDKGY----AFVRFATKESATHAI 216
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+D N+T+ +L F+ QVV RVC D ++ L + +V +++ A A+
Sbjct: 42 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQK 101
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + L +R+ T+ R R ++ N+DK V + + F
Sbjct: 102 LNYSTLNGKMIRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETF 149
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ C G + ++ DH+ +R FV+F +SA A+ +G VL + I V P
Sbjct: 150 -SGC-GTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 203
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+YV ++D +T+E+L LF+ G + C+V DP + + FV F+ A LN +
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 384
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 385 GKMVGGKPLYV 395
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R+ T+ R R+ V+ +DK + + F
Sbjct: 71 MNFDIIKGRPIRI------------TWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTF 118
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G ++ +++ D S FV F E+A +A+ +GM+L + + V
Sbjct: 119 SAF--GNISSCKIVCDEHGSRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFV 169
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 37/193 (19%)
Query: 102 LSGRAFRA---QREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R QR+ S+R++ V++ +D++I + L FS+ G + C++ D H
Sbjct: 76 IKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG 135
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS- 213
+ FV F + AR A+ ML L F+ R RE
Sbjct: 136 SRGYGFVHFETDEAARIAIEKVNGML--------------LNGKKVFVGRFMSRRERLEV 181
Query: 214 --------RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF- 262
VY N+ ++ ++++ FE G++ +++ D S + FV F
Sbjct: 182 LDLGMRKFNNVYVKNLSEETDDEKLREIFE--LYGKIISAKVMIDDSSRKSKQFGFVSFE 239
Query: 263 --AVAESAILALN 273
A+ A+ ALN
Sbjct: 240 NPEAAKKAVEALN 252
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV ++D ++TE L +FS GQV RVC D S L +A+V F AL
Sbjct: 48 SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE- 106
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P+ R S ++ N+ + + F
Sbjct: 107 ---ELNYTPIKGKACRIMWSQRDPSL-------RRNGSGNIFIKNLHPAIDNKTLHDTFS 156
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G++ ++ D + +S FV + +ESA A+ N +GM+L + V P
Sbjct: 157 AF--GKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGP 209
>gi|296081803|emb|CBI20808.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 89/226 (39%), Gaps = 47/226 (20%)
Query: 109 AQRED-SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR---FAFVEFA 164
QRED S ++V D+ +T+ L FS D RV D H R + FV F
Sbjct: 95 GQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWD-HKTGRSKGYGFVSFR 153
Query: 165 DEHGARAALN-LGGTMLGYYPVR---------------VLPSKTAILPVNPTFLPRSEDE 208
++ A++A+N L G LG +R V ++ A++ N + E+
Sbjct: 154 NQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGSQENT 213
Query: 209 REMCSR------TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF 262
E TVY N+ +V QAE+ F A G + +R+ D FV +
Sbjct: 214 NEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRIQRD----KGFGFVRY 269
Query: 263 AVAESAILA-------------LNCSGMVLGSQPIRVSPSKTPVRP 295
E A LA + CS GS+P + + P+ P
Sbjct: 270 HTHEEAALAIQMANGRIVRGKSMKCS---WGSKPTPLGTASNPLPP 312
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+ S R+VYV +I N+TE+ LA +F S G + C++ S + FV++ D A
Sbjct: 14 DSSSCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKS--SYGFVDYLDRASASL 71
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVYCTNIDKKVPQAE 229
A+ T+ G R + + L VN + + +RE S ++ ++ +V A
Sbjct: 72 AIM---TLHG----RQVYGQA--LKVNWAY---ASGQREDTSGHFNIFVGDLSPEVTDAT 119
Query: 230 VKQFFE--AACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPI 284
+ F A+C + R++ DH S FV F + A A+N SG LG++ I
Sbjct: 120 LYACFSVFASC----SDARVMWDHKTGRSKGYGFVSFRNQQDAQSAINDLSGKWLGNRQI 175
Query: 285 R 285
R
Sbjct: 176 R 176
>gi|118350408|ref|XP_001008485.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila]
gi|89290252|gb|EAR88240.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila SB210]
Length = 325
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 33/181 (18%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFADEHGARAA 172
T+YV +DQ +T+E L LFS CG V++ ++ G+ + FVE+ E A A
Sbjct: 13 TLYVGGLDQKVTQEVLWELFSQCGIVINVHLPRDKITGEHQG---YGFVEYKTEEDADYA 69
Query: 173 LNLGGTMLGY-YPVRVLPSKTAILPVNPTFLPRSEDER-EMCSRTVYCTNIDKKVPQAEV 230
+ + + Y P++V + S+D+R + ++ N+D V + ++
Sbjct: 70 IKILHLIKLYGKPIKVNKA--------------SQDKRTQEVGANIFIGNLDPSVTEMQL 115
Query: 231 KQFFEAACGGEVTRLRLL--GDHVHSTRIAFVE---FAVAESAILALNCSGMVLGSQPIR 285
++ F + G + R++ D+ S AF+ F +++AI A+N G GSQ I
Sbjct: 116 QETF--STFGLIIGRRIVRDSDNNQSKGYAFISYDNFESSDNAISAMN--GQYYGSQKIS 171
Query: 286 V 286
V
Sbjct: 172 V 172
>gi|345787182|ref|XP_542056.3| PREDICTED: ELAV-like protein 3 [Canis lupus familiaris]
Length = 647
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 30/185 (16%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D L + FV ++D + A
Sbjct: 322 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 381
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 382 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMS 424
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN + +
Sbjct: 425 QKEMEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 482
Query: 282 QPIRV 286
+PI V
Sbjct: 483 EPITV 487
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VY+ + + +ERL +FS G+ + +V D + F FV F A+ A+
Sbjct: 192 VYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMN 251
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
++ G +L + + A L L + E R +Y N+D+ + +++
Sbjct: 252 GKDINGQLLFVGRAQKKAERQAELKQMFEQL-KHERFRRCQGAKLYIKNLDETIDDEKLR 310
Query: 232 QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290
+ F + G ++R++++ + S + F+ AE A A+ +G +LGS+P+ ++ ++
Sbjct: 311 REFSSF--GSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQ 368
Query: 291 TP 292
P
Sbjct: 369 KP 370
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L FS+ G V+ R+C D L +A+V F A+ AL+
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ +R++ S+ +L +S V+ N+D+ + + + F
Sbjct: 71 MNFDLIKGKSIRLMWSQ------RDAYLRKS------GIGNVFIKNLDRSIDNKTLYEHF 118
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILALN 273
A G++ +++ D S AFV F A+ AI +N
Sbjct: 119 SAF--GKILSSKVMSDDHGSRGYAFVHFQNQIAADRAIEEMN 158
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 103 SGRAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
S R +QR+ +R++ V++ ++D++I + L FS+ G+++ +V D H +
Sbjct: 80 SIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHGSRGY 139
Query: 159 AFVEFADEHGA-RAALNLGGTML 180
AFV F ++ A RA + G +L
Sbjct: 140 AFVHFQNQIAADRAIEEMNGALL 162
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L 175
+YV D+ +++ EE L FS G V RVC D + LR+ +V + A AL+ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+++ P+RV+ S R D R ++ N+ V A +++ F
Sbjct: 183 NHSLVLDKPIRVMWSN------------RDPDARRSGVGNIFVKNLSSSVDNASLQELFS 230
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
G+V ++ + ++R FV+F ESA A+ N +G + + + V+
Sbjct: 231 KF--GDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVA 282
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ +YV D+D ++E L +FS G +V R+C D S L +A+V F A AL
Sbjct: 28 KAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKAL 87
Query: 174 N-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L T L P+R++ S LP R+ ++ N+D + A ++
Sbjct: 88 ACLNHTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSASLQD 135
Query: 233 FFEAACG-GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
F C G + ++ ++ S FV+F +SA ALN
Sbjct: 136 IF---CKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R + R+ R+T ++V ++D +I L +F G ++ C+V +
Sbjct: 94 KLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENG 153
Query: 154 SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
F FV+F + A AALN L TML K + R E E
Sbjct: 154 KSKCFGFVQFDSDDSATAALNALNDTMLD--------GKKLFVSKFVKKCERKEASEETK 205
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAV---AESA 268
VY N+ + + + ++ F G+V + ++ D +R FV F A+ A
Sbjct: 206 FTNVYVKNLGEDLTEDIIRDKFSEF--GKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKA 263
Query: 269 ILALNCSGMVLGSQPIRV 286
+ ALN G +LGS+ + V
Sbjct: 264 VEALN--GAMLGSKKLFV 279
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+YV ++D ++ +++L FSSCGQ+ +V + + F FV F+ A+ AL L
Sbjct: 311 LYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLN 370
Query: 177 GTML 180
GT+L
Sbjct: 371 GTLL 374
>gi|14585790|gb|AAK67714.1| HUC [Homo sapiens]
Length = 360
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV + D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|115475163|ref|NP_001061178.1| Os08g0192900 [Oryza sativa Japonica Group]
gi|75325377|sp|Q6Z1C0.1|NUCL1_ORYSJ RecName: Full=Nucleolin 1; AltName: Full=Protein NUCLEOLIN LIKE 1
gi|40253662|dbj|BAD05605.1| putative nucleolin [Oryza sativa Japonica Group]
gi|51449869|gb|AAU01907.1| putative nucleolin [Oryza sativa Indica Group]
gi|113623147|dbj|BAF23092.1| Os08g0192900 [Oryza sativa Japonica Group]
gi|125602459|gb|EAZ41784.1| hypothetical protein OsJ_26324 [Oryza sativa Japonica Group]
Length = 572
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q + + T+++ ++ N+ ++++ F G+V+ R+ R F V+FA
Sbjct: 304 QSQGTESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEE 363
Query: 169 ARAALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+ AL L G L PVR + + A P + + + S++++ D +
Sbjct: 364 AKKALELHGCDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLE 423
Query: 227 QAEVKQFFE---AACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALNCSGMVLG 280
++++++ E A C GE+TR+ + D S IA+++F S AL SG LG
Sbjct: 424 ESKIRESLEGHFADC-GEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLG 481
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
L P + P+ T P P S + S T++ N+ + Q +VK+FF+
Sbjct: 278 LAKTPKKKTPAATKSQNDEPK-TPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEV-- 334
Query: 240 GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNCSGMVLGSQPIRV 286
GEV +RL S+R V+FA +E A AL G L +P+R+
Sbjct: 335 GEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPVRL 382
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D +T+ +L F+ GQVV RVC D + L + +V +A A ALN
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L +RV+ + R R+ ++ N+DK + + + F
Sbjct: 106 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 153
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ D S FV++ E+A A++ +GM+L + + V P
Sbjct: 154 SAF--GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAG 135
D+K+ + R Q ++ + + + S +YV ++D+++T+++L
Sbjct: 290 DDKEWFVGKAQKKSERETELKQKFEQ----SLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 136 LFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
F+ G + C+V DP V R + FV F+ E RA + G M+ P+ V
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYV 399
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L F G VV RVC D L + +V F + + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R + ++ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G + ++ D S FV++A ESA A+ +GM+L + + V P
Sbjct: 145 SSF--GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 257 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+YV ++D +I++E+L +FS G V +V DP+ + + FV FA E A
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Query: 173 LNLGGTMLGYYPVRV 187
L G M+ P+ V
Sbjct: 376 SQLSGKMIESKPLYV 390
>gi|118398866|ref|XP_001031760.1| RNA binding protein [Tetrahymena thermophila]
gi|89286093|gb|EAR84097.1| RNA binding protein [Tetrahymena thermophila SB210]
Length = 451
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
RT++V ++ I+EE+L F SCG +++ RV DP H F +V F ++ G + AL
Sbjct: 183 RTIFVGNLHFKISEEQLRHHFESCGDILNVRVIRDPKTHEGKGFGYVFFKEKTGFQNALE 242
Query: 175 LGGTMLGYYPVRV 187
GT L +RV
Sbjct: 243 KNGTKLLEREIRV 255
>gi|340057933|emb|CCC52286.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 371
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG +VDC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGTIVDCSLNGRDEDPYRYGFIDFATEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGISK 83
>gi|356536386|ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 597
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+RTV+ I E + FS G+V D R+ D +S ++EF D A+
Sbjct: 222 QRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 281
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPT----------FLPRSEDEREMCSRTVYCTNIDK 223
L G L PV V PS+ V T P S +R +Y N+
Sbjct: 282 ALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYS-----GGARKLYVGNLHV 336
Query: 224 KVPQAEVKQFFEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAILALNCSGMV-LGS 281
+ +A++++ FEA G+V ++L L + H FV+FA E A A + +G + +G
Sbjct: 337 SITEADIRRVFEAF--GQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGG 394
Query: 282 QPIRVS 287
+ I+VS
Sbjct: 395 RTIKVS 400
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFV 260
P ++ ER+ RTV+ I K + +V +FF A G+V +RL+ D S + ++
Sbjct: 214 PEADPERDQ--RTVFAYQISLKADERDVYEFFSRA--GKVRDVRLIMDRNSRRSKGVGYI 269
Query: 261 EFAVAESAILALNCSGMVLGSQPIRVSPSK 290
EF S +A+ SG L QP+ V PS+
Sbjct: 270 EFYDVMSVPMAIALSGQPLLGQPVMVKPSE 299
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 121 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 180
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR---T 215
FV F + A AA+ L G +G V V K ++ D + +
Sbjct: 181 FVHFESDESAEAAIAKLNGMQIGEKTVYVAQFK------------KTADRSDGSPKNFTN 228
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
VY +I + ++++ F A GE+T + D R AFV FA E A A+
Sbjct: 229 VYIKHIPPSWTEEKIREEFGAF--GEITSFAMQTDP-KGRRFAFVNFAEFEQARAAV 282
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L+ R+ E+ RT++ + Q I L FSS G+V D R+
Sbjct: 130 RSRQPFIKGASPLTNRSDELTPEERDARTIFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 189
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV---LPSKTAILPVNPTFLPR 204
C A+VEF D AL L G L P+ V K + P +P+
Sbjct: 190 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPK 249
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF 262
+ +Y ++ + + +K FE G++ ++L+ D S F+ F
Sbjct: 250 G----QTGPMRLYVGSLLFNITEEMLKGIFEPF--GKIENIQLIMDPETGRSKGYGFLTF 303
Query: 263 AVAESAILAL-NCSGMVLGSQPIRVS 287
A+ A AL +G L +P++V
Sbjct: 304 RNADDAKKALEQLNGFELAGRPMKVG 329
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
+ ++YV D+ ++E+ L +F+ G V + RVC D ++ L +A+V + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L P+R P + +P+ R+ V+ N+DK + +
Sbjct: 68 LD----TLNNTPIRGKPCRIMWSQRDPSL-------RKSGVGNVFIKNLDKGIDHKALYD 116
Query: 233 FFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
F A G + +++ D +S++ FV + +SA A+ +GM++ Q + V P K
Sbjct: 117 TFSAF--GNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFK 174
Query: 291 T 291
+
Sbjct: 175 S 175
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VY+ + + +ERL +FS G+ + +V D + F FV F A+ A+
Sbjct: 187 VYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMN 246
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC-SRTVYCTNIDKKVPQAEV 230
++ G +L + R + F + C +Y N+D+ + ++
Sbjct: 247 GKDINGQLL--FVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEKL 304
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289
++ F + G ++R++++ + S + F+ AE A A+ +G +LGS+P+ ++ +
Sbjct: 305 RREFSSF--GSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALA 362
Query: 290 KTP 292
+ P
Sbjct: 363 QKP 365
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 103 SGRAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
S R +QR+ +R++ V++ ++D++I + L FS+ G+++ +V D H +
Sbjct: 75 SIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHGSRGY 134
Query: 159 AFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-- 215
AFV F ++ A RA + GT+L K L V F R + E E ++
Sbjct: 135 AFVHFQNQIAADRAIEEMNGTLL----------KDCRLFVGR-FKSRKDREAEFQNKAHE 183
Query: 216 ---VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++ +K+ F G+ ++++ D ++ FV F E+A
Sbjct: 184 FTNVYIKNFGDEMDDERLKEVFSKY--GKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 238
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D +TE L +F+ G V RVC D + L +A+V + + G RA
Sbjct: 47 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 106
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L +++ P R++ S+ +P R+ ++ N+D+++ + F
Sbjct: 107 LNYSLIKNRPCRIMWSQR-----DPAL-------RKTGQGNIFIKNLDEQIDNKALHDTF 154
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G V ++ D H +S FV + AE+A A+ N +GM+L + + V
Sbjct: 155 --AAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVG 207
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 25/131 (19%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT---------------- 118
+ Q A+DN N+ +F+ GRK RA +A+RE+ +R+
Sbjct: 278 EEAQKAVDNLNDK-----DFH-GRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLN 331
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLG 176
+YV ++D ++ +E+L F G + +V D V + F FV ++ E ++A +
Sbjct: 332 LYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMN 391
Query: 177 GTMLGYYPVRV 187
M+G P+ V
Sbjct: 392 NKMIGSKPLYV 402
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 34/199 (17%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D H
Sbjct: 82 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG 141
Query: 155 VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F E AR A+ + G +L V V F+ R E +
Sbjct: 142 SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFV-----------GRFMSRRERLEVLGD 190
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-----HVHSTRIAFVEFA 263
+ VY N +++ ++ FE G++ +++ D ++F +
Sbjct: 191 KMRKFNNVYVKNFSEEINDETLRDMFEPY--GKIISAKVMTDDGSGKGKGFGFVSFEDPE 248
Query: 264 VAESAILALNC---SGMVL 279
AE A+ ALN SG +L
Sbjct: 249 AAEKAVEALNGNDNSGKIL 267
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ + P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 77 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 124
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + +++ D S FV F E+A +A+ +GM+L + + V
Sbjct: 125 SAF--GNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVG 176
>gi|363739959|ref|XP_415181.3| PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3
[Gallus gallus]
Length = 915
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 118 TVYVSDIDQNIT--EERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
TV+VS++ N+T E +L LF SCG+V R R + +VEF DE A AL
Sbjct: 657 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALG 716
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK------VPQA 228
+ ++ P+ V P NP F Y T ++K +P +
Sbjct: 717 MDRKVVEGRPMFVSPCVDK--NKNPDF-----------KVFRYSTTLEKHKLFISGLPFS 763
Query: 229 EVKQFFEAACG--GEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQ 282
K+ E C G V +RL+ + + +A+VE+ A A A+L ++ G+ +
Sbjct: 764 CTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMD--GLTIKEH 821
Query: 283 PIRVSPSKTPVR 294
I+V+ S P+R
Sbjct: 822 VIKVAISNPPLR 833
>gi|125560429|gb|EAZ05877.1| hypothetical protein OsI_28114 [Oryza sativa Indica Group]
Length = 572
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q + + T+++ ++ N+ ++++ F G+V+ R+ R F V+FA
Sbjct: 304 QSQGTESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEE 363
Query: 169 ARAALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+ AL L G L PVR + + A P + + + S++++ D +
Sbjct: 364 AKKALELHGCDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLE 423
Query: 227 QAEVKQFFE---AACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALNCSGMVLG 280
++++++ E A C GE+TR+ + D S IA+++F S AL SG LG
Sbjct: 424 ESKIRESLEGHFADC-GEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLG 481
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
L P + P+ T P P S + S T++ N+ + Q +VK+FF+
Sbjct: 278 LAKTPKKKTPAATKSQNDEPK-TPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEV-- 334
Query: 240 GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNCSGMVLGSQPIRV 286
GEV +RL S+R V+FA +E A AL G L +P+R+
Sbjct: 335 GEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPVRL 382
>gi|410921400|ref|XP_003974171.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 4-like [Takifugu
rubripes]
Length = 414
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 42/203 (20%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 78 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 137
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 138 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 180
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVHSTR--------------IAFVEF---AVAESAI 269
Q E++Q F G + R+L D V R + F+ F AE AI
Sbjct: 181 QKELEQLFSQY--GRIITSRILVDQVTGARVCLXSSGPAGGSRGVGFIRFDKRVEAEEAI 238
Query: 270 LALNCSGMVLGSQPIRVSPSKTP 292
LN ++PI V + P
Sbjct: 239 KGLNGQKPSGAAEPITVKFANNP 261
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMS 137
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D S + F+ F AE AI LN + +
Sbjct: 138 QKEMEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 196 EPITVKFANNP 206
>gi|345567796|gb|EGX50724.1| hypothetical protein AOL_s00075g150 [Arthrobotrys oligospora ATCC
24927]
Length = 1471
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 42/294 (14%)
Query: 2 AAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH 61
AA AD G+++A N ++ +KL L P E + +
Sbjct: 986 AAEADQNGESSAEKEKKNTRDR-------------EKLTVFAKNLPPDVDELTVRKFFKD 1032
Query: 62 --TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTV 119
T + F++I ADDN +A F N + +KRL+GR Q TV
Sbjct: 1033 CGTINAFTMIE---ADDNSATASIEFQNAADVLAAQTRDKKRLNGREITVQL--GFNTTV 1087
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEF-ADEHGARAALNLGG 177
YV++ E + LF CG +++ R + + RF +V+F A E +A G
Sbjct: 1088 YVTNFPPTADENWIRELFKECGPILEVRFPSLKYNNHRRFCYVQFDASEDAEKATEMNGK 1147
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC---SRTVYCTNIDKKVPQAEVKQFF 234
+ G+ V L P + ER R V+ NID + ++++ F
Sbjct: 1148 DVEGFKLVSKLSD------------PNVKQERSGAVYEGREVFVRNIDYAATEDDIRELF 1195
Query: 235 EAACGGEVTRLRLL--GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
G V +RL+ G VHS F++F ESA +L S+ + V
Sbjct: 1196 SKY--GTVKSIRLISKGRGVHSG-YGFLDFETTESANASLELHEQKFKSRKLLV 1246
>gi|344240064|gb|EGV96167.1| ELAV-like protein 3 [Cricetulus griseus]
Length = 352
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|449691485|ref|XP_002170081.2| PREDICTED: uncharacterized protein LOC100212876, partial [Hydra
magnipapillata]
Length = 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFAFVEFADEHGARA 171
D +RRTV+V +I +IT ++L FS G+V R+C GD ++AFVEF
Sbjct: 21 DEIRRTVFVQNIPPDITADQLMAFFSGVGEVKYLRLCKGDSG---KYAFVEFTAIDSVPT 77
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
AL G + G ++V SK +P P SE
Sbjct: 78 ALQYNGVLFGGRCLKVDYSK------HPIIKPESE 106
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL-GDHVHSTRIAFVEFAVAESAILAL 272
RTV+ NI + ++ FF GEV LRL GD S + AFVEF +S AL
Sbjct: 25 RTVFVQNIPPDITADQLMAFFSGV--GEVKYLRLCKGD---SGKYAFVEFTAIDSVPTAL 79
Query: 273 NCSGMVLGSQPIRVSPSKTPV 293
+G++ G + ++V SK P+
Sbjct: 80 QYNGVLFGGRCLKVDYSKHPI 100
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 186 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 245
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 246 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 291
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 292 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 349
Query: 285 RVSPSKTP 292
V + P
Sbjct: 350 TVKFANNP 357
>gi|242056799|ref|XP_002457545.1| hypothetical protein SORBIDRAFT_03g009130 [Sorghum bicolor]
gi|241929520|gb|EES02665.1| hypothetical protein SORBIDRAFT_03g009130 [Sorghum bicolor]
Length = 792
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG +A D+++RTV +S++ +T + + LF CG+VVDC H A+VE
Sbjct: 328 SGSINKADEADALKRTVQISNLSPVLTVDYIKQLFGLCGKVVDCTTTDSKH----IAYVE 383
Query: 163 FADEHGARAAL-----NLGGTMLGYYPVRVLPSK 191
++ A AAL N+GG L + LP K
Sbjct: 384 YSKPEEATAALEFNSKNVGGRPLNVEMAKSLPPK 417
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q +
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKD 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEFAV---AESAILALNCSGMVLGSQPI 284
++Q F G + R+L + V S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|116789456|gb|ABK25253.1| unknown [Picea sitchensis]
Length = 487
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 38/207 (18%)
Query: 119 VYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFVEFADEH-GARA 171
++V D+ ++T+ L F S +VV RV G + FV F DE+ RA
Sbjct: 174 IFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKG---YGFVRFGDENEQVRA 230
Query: 172 ALNLGGTMLGYYPVRVLPSKT------------AILPVNPTFLPRSEDEREMCSRTVYCT 219
+ G P+R P+ T A V P + D + T++
Sbjct: 231 MTEMNGMFCSSRPMRTGPATTKKTTGFQQPYPKAAAAVPPQVVASDNDPN---NTTIFVG 287
Query: 220 NIDKKVPQAEVKQFFEAACGGEVTRLRL-LGDHVHSTRIAFVEF---AVAESAILALNCS 275
+D V ++Q F GE+ +++ +G R FV+F A AE A+ L+
Sbjct: 288 GLDPSVTDEMLRQLFGQF--GELVHVKIPVGK-----RCGFVQFNNRASAEEALQMLH-- 338
Query: 276 GMVLGSQPIRVSPSKTPVRPRVTRPGM 302
G VLG Q IR+S ++P +V PG
Sbjct: 339 GTVLGQQAIRLSWGRSPANKQVQTPGW 365
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|357625522|gb|EHJ75940.1| hypothetical protein KGM_20346 [Danaus plexippus]
Length = 245
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I + L F+ G++ DCRV DP ++ + FV F + A +A+ +
Sbjct: 56 IFVGDLSPEIETQNLRDAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKSEAESAITAM 115
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
G LG + R P+ L P ++ + TVYC + + +
Sbjct: 116 NGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSPTNCTVYCGGLTAGLTEEL 175
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
+++ F+ G + +R+ D + AF+ F+ ESA A+
Sbjct: 176 MQKTFQPF--GTIQEIRVFKDKGY----AFIRFSTKESATHAI 212
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 72 MNFDIIKGRPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKNIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + R+ D S++ FV F E+A +++ +GM+L + + V
Sbjct: 120 SAF--GNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYG 133
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A A+ + G +L V V F+PR E E+++ +
Sbjct: 134 FVHFETEEAANNAIEKVNGMLLNGKKVYV-----------GKFIPRKEREKDLGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL 248
VY N V ++K+ F+ G++T +++
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPY--GKITSYKVM 215
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLLRNKPIRIMWSQ------------RDPSLRRSGIGNVFIKNLDKTIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A A+ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVG 163
>gi|297835442|ref|XP_002885603.1| hypothetical protein ARALYDRAFT_898933 [Arabidopsis lyrata subsp.
lyrata]
gi|297331443|gb|EFH61862.1| hypothetical protein ARALYDRAFT_898933 [Arabidopsis lyrata subsp.
lyrata]
Length = 985
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
G + + DS+++ + VS++ ++T E+L LFS CG VVDC + H A++E+
Sbjct: 337 GSPEKGENGDSLKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKH----LAYIEY 392
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKT 192
++ A AAL L T + P+ V +K+
Sbjct: 393 SNSEEATAALALNNTEVFGRPLNVEIAKS 421
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + + +++ F G +R++ D +R FV F E A A++
Sbjct: 192 NVYIKNFGDDMDEEKLRDVFNKY--GNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVD 249
Query: 274 -CSGMVLGSQPIRVSPSKTPV 293
+G + +PI V ++ V
Sbjct: 250 EMNGKEMNGKPIYVGRAQKKV 270
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G +V RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGQPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRV 286
A G + +++ D S FV F AE AI +N GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSRGYGFVHFETHDAAERAIEKMN--GMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETHDAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + + ++K+ F G T +R++ D R FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDEKLKEIFSKF--GNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
>gi|242039427|ref|XP_002467108.1| hypothetical protein SORBIDRAFT_01g019710 [Sorghum bicolor]
gi|241920962|gb|EER94106.1| hypothetical protein SORBIDRAFT_01g019710 [Sorghum bicolor]
Length = 664
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-DPHSVLRFAFVEFADE 166
++Q + + +T++V ++ +I E++ F G+VVD R+ D S + VEFA
Sbjct: 404 KSQSQATGSKTIFVGNLAYSIEREQVKEFFEEAGEVVDIRLSTFDDGSFKGYGHVEFATA 463
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE----REMCSR---TVYCT 219
A+ AL GG L +R+ + + P S + R+ R TV+
Sbjct: 464 EAAQKALEFGGRDLMGRSLRI-----DLAVERGAYTPNSGKDNGSFRKSAQRSGNTVFIK 518
Query: 220 NIDKKVPQAEVKQFFEA---ACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNC 274
D V + +++ E +C G++TR+ + D+ S +A+++F +S A
Sbjct: 519 GFDTSVGEDQIRSALEEHFRSC-GDITRISIPKDYDTGASKGMAYMDFKDPDSLNKAYEM 577
Query: 275 SGMVLG 280
+G LG
Sbjct: 578 NGTYLG 583
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG-DHVHSTRIAFVE 261
P + S+T++ N+ + + +VK+FFE A GEV +RL D VE
Sbjct: 402 PAKSQSQATGSKTIFVGNLAYSIEREQVKEFFEEA--GEVVDIRLSTFDDGSFKGYGHVE 459
Query: 262 FAVAESAILALNCSGMVLGSQPIRV 286
FA AE+A AL G L + +R+
Sbjct: 460 FATAEAAQKALEFGGRDLMGRSLRI 484
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEH-GARAALN 174
++Y D+D + TE +L LFS+ G VV RVC D L +A+V F + ARA
Sbjct: 33 SLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDA 92
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L ++ P+R++ S+ R R+ ++ N+DK++ + F
Sbjct: 93 LNFQVVNGKPIRIMYSQ------------RDPALRKSGVGNIFIKNLDKEIDNKALYDTF 140
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G + ++ D S FV+F E A A+ +GM+L + + V P
Sbjct: 141 --AQFGNIVSAKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGP 194
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
VYV ++ +++TEE+L +F G + V D + F FV + D A ++
Sbjct: 211 VYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVE--- 267
Query: 178 TMLGYYPV--------RVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVPQA 228
+ GY + R + F R E +M +Y N++ V A
Sbjct: 268 ELDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDA 327
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
++++ F A G +T R++ D ++R AFV F+ A+ A A+ +G + G +P+ V
Sbjct: 328 KLRELF--AEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYV 385
Query: 287 S 287
+
Sbjct: 386 A 386
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 107 FRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
F A+R + + + +Y+ +++ + + +L LF+ G + CRV D R AFV
Sbjct: 299 FDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAGASRGSAFV 358
Query: 162 EFAD-EHGARAALNLGGTMLGYYPVRV 187
F+ + RA + G M G P+ V
Sbjct: 359 AFSSADEATRAVTEMNGKMAGQKPLYV 385
>gi|303284403|ref|XP_003061492.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456822|gb|EEH54122.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 525
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+++T++V ++ +T E+L +F+ CG V DCR+ + F FVE+A A A L
Sbjct: 177 LQKTLHVGNLAPGVTVEQLRTIFAFCGVVTDCRIANEKA----FGFVEYATHEQALAGLG 232
Query: 175 LGGTMLGYYPVRVLPSKT 192
L G L P+RV SKT
Sbjct: 233 LNGLALEDRPLRVEMSKT 250
>gi|195574479|ref|XP_002105216.1| GD21365 [Drosophila simulans]
gi|194201143|gb|EDX14719.1| GD21365 [Drosophila simulans]
Length = 363
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 20/186 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 99 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 158
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
G LG + R P+ A + P ++ + TVYC I+ +
Sbjct: 159 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 218
Query: 230 VKQFFEAACG--GEVTRLRLLGDHVHSTRIAFVEFAVAES---AILALNCSGMVLGSQPI 284
++ + G + +R+ D + AFV F+ E+ AI+A+N + + QP+
Sbjct: 219 NEEILQKTFSPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAIVAVNNT--EINQQPV 272
Query: 285 RVSPSK 290
+ + K
Sbjct: 273 KCAWGK 278
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F+ G+ ++++ D +R FV + E A
Sbjct: 192 NVYIKNFGDDMDDERLKELFDKY--GKTLSVKVMMDPTGKSRGFGFVSYEKHEDA 244
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 58 YHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRR 117
Y +H D + +V + N + N ++ R ++ N Q + R F +++ + R
Sbjct: 238 YEKHEDANKAVEDMNGTELNGKTVF----VGRAQKKNERQAELK---RKFEMLKQERISR 290
Query: 118 ----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAA 172
+Y+ ++D I +E+L FS G + +V + F FV F+ E +A
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAV 350
Query: 173 LNLGGTMLGYYPVRV 187
+ G ++G P+ V
Sbjct: 351 TEMNGRIVGSKPLYV 365
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-NL 175
+YV D+ ++ EE L FS G V RVC D S LR+ +V + + A AL +
Sbjct: 104 LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKM 163
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+++ P+RV+ S R D R V+ N++ + +++ F
Sbjct: 164 NHSLILDKPIRVMWSN------------RDPDARRSGVGNVFVKNLNDHIDNVILQELFS 211
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
G++ ++ + ++R FV+FA ESA +A+
Sbjct: 212 KF--GDILSCKVARNDDGTSRGYGFVQFAAQESADIAI 247
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGG 177
+++ ++D+ L LF G VV+C V V + FV E R A+ NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
L + ++V +K+ P PT ++ N+ K EV++ F+
Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT-------------TKIFVGNLTDKTRAPEVRELFQKY 109
Query: 238 CGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G V ++ ++ VH + V+ A+ E LN G V+ QP++V S + VRP
Sbjct: 110 --GTVVECDIVRNYGFVHLDCVGDVQDAIKE-----LN--GRVVDGQPLKVQVSTSRVRP 160
Query: 296 RVTRPGM 302
+PGM
Sbjct: 161 ---KPGM 164
>gi|19113513|ref|NP_596721.1| RNA-binding protein Prp24 (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698432|sp|Q9USY2.1|YOW4_SCHPO RecName: Full=Uncharacterized RNA-binding protein C1861.04c
gi|5734577|emb|CAB52740.1| RNA-binding protein Prp24 (predicted) [Schizosaccharomyces pombe]
Length = 1014
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
V +YV++ E + LFS+ G VVD R ++ RF +V+ A AL
Sbjct: 664 VDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL 723
Query: 174 NLGGTMLG-YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L +L YP++V S P+ T PRS E R +Y TNID KV + +V+
Sbjct: 724 QLHKKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVET 775
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
FF G+V +R+ +V + A AL+ +G LG++ + V SK
Sbjct: 776 FFRDY--GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
R +YV++ID + E+ + F GQV R+ + F +V A AL+
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 177 GTMLGYYPVRVLPSK-------TAILPVNPTFLPRSEDERE-------------MCSRTV 216
G LG + V+ SK T + + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
TN+D V +A ++ FE+ G++ R+ L +H + F++ A A LAL
Sbjct: 877 GVTNVDGTVNEARLRSLFESY--GKLYRVVLHPEH-EGAVVEFLDIHDAGKASLAL 929
>gi|224121456|ref|XP_002330832.1| predicted protein [Populus trichocarpa]
gi|222872634|gb|EEF09765.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 39/230 (16%)
Query: 100 KRLSGRAFR-------AQRED-SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
++L G A + QRED S ++V D+ +T+ L FS D RV D
Sbjct: 96 RQLYGEALKVNWAYASGQREDTSGHFHIFVGDLSPEVTDATLYACFSVFPSCSDARVMWD 155
Query: 152 PHSVLR---FAFVEFADEHGARAALN-LGGTMLGYYPVRV---------------LPSKT 192
H R + FV F ++ A++A+N L G LG +R ++
Sbjct: 156 -HKTGRSKGYGFVSFRNQQEAQSAINDLTGKWLGNRQIRCNWATKGVGSNEDKQNSDNQN 214
Query: 193 AILPVNPTFLPRSEDEREMCSR------TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246
A++ N + E+ E TVY N+ V QAE+ F A G + +R
Sbjct: 215 AVVLTNGSSAGSQENTNEEAPENNPAYTTVYVGNLSHVVTQAELHGNFHALGAGVIEEVR 274
Query: 247 LLGDHVHSTRIAFVEFAVAESAILALNCS-GMVLGSQPIRVSPSKTPVRP 295
+ D FV + E A A+ G ++ +P++ S P P
Sbjct: 275 VQRD----KGFGFVRYNTHEEAAFAIQMGNGKIVCGKPMKCSWGSKPTPP 320
>gi|431093|gb|AAA58677.1| huc [Homo sapiens]
Length = 359
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV + D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|427796107|gb|JAA63505.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 505
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARA 171
S ++TV+V ++ + +E L LF+ CG VV R+ D + + F FV F GA
Sbjct: 339 SEKQTVFVGNLAHEVQDEELWKLFAECGDVVAVRLVRDKVTGMGKGFGFVTFKQMDGAAL 398
Query: 172 ALNLGGTMLGYYPVRVLP-SKTAI 194
AL + G + P+RV P SK A+
Sbjct: 399 ALEMTGREVSGRPIRVSPFSKQAV 422
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 62/302 (20%)
Query: 17 TNNNKNNN---LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVIN--- 70
++ +K+ N L++KK E+EF + D +K P + D S ++
Sbjct: 147 SSKDKSQNSRLLQSKKKENEFKRKVSSDDMDNEADGSKPMQPLKRRRQDDATLSNVDTVN 206
Query: 71 --NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNI 128
+ FA DN Q + N + R + D RT++V ++
Sbjct: 207 ETSLFATDNDQKELKNRREKKVRHPDT----------------PDKDGRTIFVGNLPGTA 250
Query: 129 TEERLAGLFSSCGQVVDCR-----------------VCGDPHSVLRF--AFVEFADEHGA 169
T++ + +FS G + R + HS + A+V F +
Sbjct: 251 TQKAVRHVFSKYGTIESIRFRSIVPAKESLSKKVAFISKALHSNKQTVNAYVVFKAKEAV 310
Query: 170 RAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
AL+L GG + G + + V+ P+S+ + +TV+ N+ +V
Sbjct: 311 NKALSLNGGVLFGNH-----------IRVDCVGAPKSQVSEK---QTVFVGNLAHEVQDE 356
Query: 229 EVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
E+ + F A CG +V +RL+ D V FV F + A LAL +G + +PIRV
Sbjct: 357 ELWKLF-AECG-DVVAVRLVRDKVTGMGKGFGFVTFKQMDGAALALEMTGREVSGRPIRV 414
Query: 287 SP 288
SP
Sbjct: 415 SP 416
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+D++ RT+YV ++D+ +TE + LF G C++ + + FVEF + A A
Sbjct: 9 DDALPRTLYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEHGGNDPYCFVEFVEHSHAAA 68
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL TM G R++ K + VN P S + V+ ++ +V ++K
Sbjct: 69 ALQ---TMNG----RMILGKE--VKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLK 119
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
F A G+++ R++ D S FV F AE+AI +N G L + IR
Sbjct: 120 AAF--APFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMN--GQWLSGRAIRT 175
Query: 287 S-PSKTPVRPR 296
+ ++ P PR
Sbjct: 176 NWATRKPPPPR 186
>gi|407407545|gb|EKF31308.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 425
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
R Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+
Sbjct: 8 RYGCYIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKY 67
Query: 176 GGTMLGYYPVRVLPSK 191
G L ++V SK
Sbjct: 68 NGFTLAGRKIKVGVSK 83
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 23/187 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FSS G V+ RVC D + L +A+V F A AL+
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R + ++ N+DK + + F
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
+ G + ++ D +++ FV F ESA A+ +GM+L + + V
Sbjct: 127 --SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG----K 180
Query: 293 VRPRVTR 299
+PR R
Sbjct: 181 FQPRTAR 187
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++ + +L LF+ QVV R+C D L + +V F++ H A A++
Sbjct: 25 SLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDV 84
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L +R++ S R R+ + V+ N+DK + + F
Sbjct: 85 LNFTPLNGKIIRIMYSI------------RDPSARKSGAANVFIKNLDKAIDHKALYDTF 132
Query: 235 EAACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
A G + ++ D ++ FV+F ESA A++ +GM++ + + V P
Sbjct: 133 SAF--GNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGP 186
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 72 NFAD-DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA---------FRAQREDSVRRTV-- 119
NFA+ D+ A++ N NF+ G++ G+A + Q E + TV
Sbjct: 249 NFANVDDAAKAVEALNGK-----NFD-GKEWYVGKAQKKSERELELKGQHEQITKETVDK 302
Query: 120 ------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAA 172
Y+ ++D ++ +E L LFS G + C+V DP+ + R + FV F+ GA A
Sbjct: 303 YHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRA 362
Query: 173 LN-LGGTMLGYYPVRV 187
L + G M+ P+ V
Sbjct: 363 LGEMNGKMVAGKPLYV 378
>gi|354475185|ref|XP_003499810.1| PREDICTED: ELAV-like protein 3 [Cricetulus griseus]
Length = 359
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 34 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 93
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 94 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 139
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 140 MEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 197
Query: 285 RVSPSKTP 292
V + P
Sbjct: 198 TVKFANNP 205
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F+ G+ ++++ D +R FV + E A
Sbjct: 192 NVYIKNFGDDMDDERLKELFDKY--GKTLSVKVMMDPTGKSRGFGFVSYEKHEDA 244
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 58 YHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRR 117
Y +H D + +V + N + N ++ R ++ N Q + R F +++ + R
Sbjct: 238 YEKHEDANKAVEDMNGTELNGKTVF----VGRAQKKNERQAELK---RKFEMLKQERISR 290
Query: 118 ----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAA 172
+Y+ ++D I +E+L FS G + +V + F FV F+ E +A
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAV 350
Query: 173 LNLGGTMLGYYPVRV 187
+ G ++G P+ V
Sbjct: 351 TEMNGRIVGSKPLYV 365
>gi|443682493|gb|ELT87074.1| hypothetical protein CAPTEDRAFT_222846 [Capitella teleta]
Length = 841
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 8/187 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R +VS++ ++ E+RL +FS G+V++ R+ + + FA++EF DE A+ AL L
Sbjct: 604 RKAFVSNLSYDVDEQRLQEIFSKLGEVINVRLVTNFKGQSKGFAYIEFKDELLAQKALTL 663
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
M+ P+ V + P S ++ ++ + + + + V+ F+
Sbjct: 664 DRMMVNNRPMFVSECNKSRDPSQKFKFATSLEKNKL-----FVKGLPRTTGRDAVENIFK 718
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEF-AVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
+ RL + V S +A+VEF + +E+A + G+++G I V+ S P R
Sbjct: 719 QYGAIKDVRLVTYRNGV-SKGLAYVEFVSESEAAQAVMKADGLMVGDHEISVAISNPPER 777
Query: 295 PRVTRPG 301
+ P
Sbjct: 778 QQSLPPA 784
>gi|407846855|gb|EKG02815.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 422
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGVSK 83
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +TE L FS+ G VV RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R ++ N+DK + + F
Sbjct: 73 MNFDVLRGRPIRIMWSQ------------RDPSLRRSGVGNIFIKNLDKTIDNKAMYDTF 120
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV F ESA+ A+ +GM+L + + V
Sbjct: 121 SAF--GNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVG 173
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L GR R +QR+ S+RR+ +++ ++D+ I + + FS+ G ++ C+V D
Sbjct: 78 LRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAG 137
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A A+ ML L K + F+PR + ERE+
Sbjct: 138 NSKGYGFVHFETEESAVNAITKVNGML-------LNGKKVFVG---RFIPRKDRERELGE 187
Query: 214 RTVYCTNI 221
+ Y TN+
Sbjct: 188 KAKYFTNV 195
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFA 159
A +++DS T++V D+ ++T+ L F + +VV R+ G +
Sbjct: 146 AGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKG---YG 202
Query: 160 FVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS-------EDEREM 211
FV+F DE RA + G P+R+ P+ F S ++E +
Sbjct: 203 FVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTSGGQQFSKTSYQNPQGAQNENDP 262
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESA 268
+ T++ N+D V ++Q F GE+ +++ R FV+FA AE A
Sbjct: 263 NNTTIFVGNLDANVTDEHLRQVFGQY--GELVHVKI----PVGKRCGFVQFADRNCAEEA 316
Query: 269 ILALNCSGMVLGSQPIRVSPSKTP 292
+ LN G +G Q IR+S ++P
Sbjct: 317 LRVLN--GTQIGGQNIRLSWGRSP 338
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D +TE L +F+ G V RVC D L +A+V + + G RA
Sbjct: 43 SLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + + P R++ S+ R R+ ++ N+D+++ + F
Sbjct: 103 LNYSSIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDEQIDNKALHDTF 150
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G V ++ D H +S FV + AE+A A+ + +GM+L + + V P
Sbjct: 151 --AAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGP 204
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ RR +++ ++D+ I + L F++ G+++ C+V + H L + F
Sbjct: 152 RIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHGSLGYGF 211
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTV 216
V + A AA+ ++ G +L V V + K + +E V
Sbjct: 212 VHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKI---------EEARAHYTNV 262
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
Y N+D V Q E ++ FE G++T + D +R FV F+ E A A+
Sbjct: 263 YVKNLDPAVTQEEFEKLFEKY--GKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAV 317
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
+ SV ++YV +++ N+ E L +F+ G V RVC D + L +A+V F + +
Sbjct: 75 QGSVNTSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDS 134
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
AL L Y P+R P + + R +R ++ N+D+ +
Sbjct: 135 ERALE----QLNYTPIRGRPCRI-------MWSQRDPGQRRAGQGNIFIKNLDEAIDNKA 183
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILALNCSGMVLGSQPIRV 286
+ F A G++ ++ + S FV + AE+AI +N GM+L + + V
Sbjct: 184 LHDTF--AAFGKILSCKVASNEHGSLGYGFVHYESNDAAEAAIKHVN--GMLLNDKKVYV 239
Query: 287 S 287
Sbjct: 240 G 240
>gi|258564845|ref|XP_002583167.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906868|gb|EEP81269.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1297
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 19/218 (8%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
AD N SAI F+ + +K L GR Q E + T++V++ E +
Sbjct: 856 ADGNSASAIVEFDTKEDAEAAQTRDQKVLEGRTISVQLE--TKATLFVTNFPPEADEAYI 913
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLG---YYPVRVL- 188
+F G++ + R + RF +V+FA A AAL L +G + V++
Sbjct: 914 RRIFGPYGEIAEVRFPSLKFNTHRRFCYVQFASTVDAHAALELDQEPVGENLHLVVKISD 973
Query: 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL 248
PSK RS E R ++ +N+D K + ++ + F A EV R+
Sbjct: 974 PSKRQA---------RSGAFEE--GREIHISNLDWKATEDDLVELFMAFGKVEVARIPTK 1022
Query: 249 GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
D S FV F+ E+A AL S+P+RV
Sbjct: 1023 ADG-GSKGFGFVAFSTPETANAALAMDQKEFRSRPLRV 1059
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GRA R +QR+ ++R+T +++ ++D+ I + L F++ G V+ C+V D H
Sbjct: 73 IKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHG 132
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV + A A+ ML L K + + + R EM +
Sbjct: 133 RSKGYGFVHYETAEAAETAIKAVNGML-------LNDKKVYVGHHISRKERQSKIEEMKN 185
Query: 214 R--TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL-LGDHVHSTRIAFVEFAVAESAIL 270
+ +Y N+D +V Q E Q FE G +T L + D S FV F E A
Sbjct: 186 QFTNIYVKNVDPEVTQEEFVQLFEPF--GRITSAVLQVDDEGKSRGFGFVNFDTHEEAHA 243
Query: 271 ALNC 274
A+
Sbjct: 244 AVEA 247
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D +TE L +F+ G V RVC D + L +A+V + + G RA
Sbjct: 8 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 67
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L +++ R++ S+ R R+ ++ N+D+++ + F
Sbjct: 68 LNYSLIKGRACRIMWSQ------------RDPALRKTGQGNIFIKNLDEQIDNKALHDTF 115
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVS 287
A G V ++ D H S FV + AE+A A+ +GM+L + + V
Sbjct: 116 --AAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVG 168
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQ 79
N+ N+ K + E T ++ V +F + + F +N + +
Sbjct: 185 NQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVL-QVDDEGKSRGFGFVNFD-THEEAH 242
Query: 80 SAIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT----------------VYVS 122
+A++ +++ + GRK RA +A+RE+ +RR+ +Y+
Sbjct: 243 AAVEALHDSDVK------GRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIK 296
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTML 180
+++ +I +ERL G F G + +V D + + F FV F+ + +A + M+
Sbjct: 297 NLEDDIDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMI 356
Query: 181 GYYPVRV 187
G P+ V
Sbjct: 357 GTKPLYV 363
>gi|320580160|gb|EFW94383.1| Splicing factor [Ogataea parapolymorpha DL-1]
Length = 295
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 101 RLSGRAFRAQREDSVR--RTVYVSDID-QNITEERLAGLFSSCGQVVDCR--VCGDPHSV 155
++S R +R+ ++ R VYVSD+D + E++L+ +FS G + R V D S
Sbjct: 98 KISNPEARQERKGALEEGRQVYVSDLDFYKVDEDKLSEIFSKYGDIEMIRIPVRRDEKSK 157
Query: 156 LR---FAFVEFADEHGARAALNLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDER 209
FAF+ F A +L L G +L P+++ P K + + R+
Sbjct: 158 KLNNGFAFISFRSSSDAVKSLELDGKLLAGRPMKIELATPKKKKVSVLGTGKFDRA---- 213
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
RT+ N+D K+ +K FE G VT++ L ++ A +EF S+
Sbjct: 214 ----RTISVLNVDDKINTETLKAIFEEI--GPVTQIELQPEN----NAALIEFETVRSSG 263
Query: 270 LA-LNCSGMVLGSQPIRV 286
+A +G +G +R+
Sbjct: 264 MADFKFNGRKIGDTTVRI 281
>gi|66800585|ref|XP_629218.1| hypothetical protein DDB_G0293252 [Dictyostelium discoideum AX4]
gi|60462622|gb|EAL60825.1| hypothetical protein DDB_G0293252 [Dictyostelium discoideum AX4]
Length = 691
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA-RAALNL 175
+ V+ +I+ TEE + LFS G + ++ + AF+ FAD + A +A NL
Sbjct: 177 KIVWAGNINPESTEEEVRHLFSQFGYLQAIKIIPNKQC----AFITFADVNCAIQAQFNL 232
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSED-----EREMCSRTVYCTNIDKKVPQAEV 230
GT+ P+++ K P R + + E ++ ++ N++ V +
Sbjct: 233 NGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELL 292
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
KQ F+ G V +R+L H AFV F ESA A N +G ++ P++++
Sbjct: 293 KQIFDQF--GNVDTIRIL----HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPLKIN 344
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D+NI + L FS+ G ++ C++ D +
Sbjct: 78 IKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG 137
Query: 155 VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
L + FV F E AR ++ + G +L V V F+ R E +
Sbjct: 138 SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFV-----------GRFMSRKERLEMLGD 186
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAES 267
+ VY N+++ + ++++ FE G++ +++ R FV F E+
Sbjct: 187 KAKKFTNVYVKNLNETMDDKKLREMFEVF--GKIISAKMMNTEEGQKRGFGFVSFDDHEA 244
Query: 268 AILAL 272
A A+
Sbjct: 245 AAKAV 249
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ + P+R++ S+ R R+ ++ N+DK + + F
Sbjct: 73 MNFDAIKGRPIRIMWSQ------------RDPSLRKSGVGNIFIKNLDKNIDNKALYDTF 120
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D S FV F E+A ++ +GM+L + + V
Sbjct: 121 SAF--GNILSCKIAMDQNGSLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVG 172
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +F+ G VV RVC D ++ L +A+V ++ A AL
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALE- 99
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + P+ P + +P+ R+ + ++ N+DK + + K ++
Sbjct: 100 ---MLNFTPINGKPIRIMYSNRDPSL-------RKSGTANIFIKNLDKSI---DNKALYD 146
Query: 236 AACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288
C G + ++ D ++ FV++ E+A A++ +GM++ + + V P
Sbjct: 147 TFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGP 202
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH---FSVINN 71
N+ K NN+ K T L ++F K + + + D F +N
Sbjct: 211 NSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITS----AVVMREGDGRSKCFGFVNF 266
Query: 72 NFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQRE---------DSVRRT-VY 120
DD Q A+ N + + GR ++ S R + + D + T +Y
Sbjct: 267 ESPDDAAQ-AVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY 325
Query: 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLGGT 178
+ ++D ++ +++L LF+ G + C+V D + V R + FV F + E +RA +
Sbjct: 326 LKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSK 385
Query: 179 MLGYYPVRV 187
M+G P+ V
Sbjct: 386 MVGSKPLYV 394
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV ++D +++E L +FS G V RVC D ++ L +A+V F D R A+
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQ 98
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ S +Y N+ + + + F
Sbjct: 99 LNYTLIKGKPCRIMWSQ------------RDPSLRKKGSGNIYIKNLHPAIDNKSLHETF 146
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEF---AVAESAILALNCSGMVLGSQPIRVS 287
+ G + ++ D +R FV F + A AI A+N GM++ Q + V+
Sbjct: 147 --STFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVN--GMLMNDQEVYVA 199
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +Y+ ++ I + L FS+ G ++ C+V D + V R F
Sbjct: 110 RIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFG 169
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV F +E AR A+ ML + + + + + R E+ ++ +Y
Sbjct: 170 FVHFENESDARDAIEAVNGML-------MNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIY 222
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALN 273
NID + Q E +Q F G++T L D R I F + + A A+ LN
Sbjct: 223 VKNIDLETSQEEFEQLFSKY--GKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELN 280
Query: 274 CS 275
S
Sbjct: 281 ES 282
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F A+ A+N + G +L V V F R E E E+ +R
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL 272
+Y N+ V + +++ F G++ ++++ D+ HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQELFSQF--GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ML P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
+ G + ++ D S FV F E+A A+N +GM+L + + V K+
Sbjct: 120 --STFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
>gi|255074269|ref|XP_002500809.1| predicted protein [Micromonas sp. RCC299]
gi|226516072|gb|ACO62067.1| predicted protein [Micromonas sp. RCC299]
Length = 456
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
V RTVY +++ +ITE+ LA FS G V + G + RF FVEF + A +A
Sbjct: 238 VSRTVYAGNVNSSITEDMLADFFSIAGNVTYVKFAGSEFNPSRFGFVEFDTKAAAESAKA 297
Query: 175 LGGTMLGYYPVRVLPSKTAIL 195
L GT + ++V S I+
Sbjct: 298 LTGTQVAEMTIKVKHSNNPIV 318
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271
SRTVY N++ + + + FF A G VT ++ G + +R FVEF +A A
Sbjct: 238 VSRTVYAGNVNSSITEDMLADFFSIA--GNVTYVKFAGSEFNPSRFGFVEFDTKAAAESA 295
Query: 272 LNCSGMVLGSQPIRVSPSKTPV 293
+G + I+V S P+
Sbjct: 296 KALTGTQVAEMTIKVKHSNNPI 317
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 23/187 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FSS G V+ RVC D + L +A+V F A AL+
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R + ++ N+DK + + F
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKTP 292
+ G + ++ D +++ FV F ESA A+ +GM+L + + V
Sbjct: 127 --SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG----K 180
Query: 293 VRPRVTR 299
+PR R
Sbjct: 181 FQPRTAR 187
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ +YV D+D ++E L +FS G +V R+C D S L +A+V F A AL
Sbjct: 28 KAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKAL 87
Query: 174 N-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L T L P+R++ S LP R+ ++ N+D + A ++
Sbjct: 88 ACLNHTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSASLQD 135
Query: 233 FFEAACG-GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
F C G + ++ ++ S FV+F +SA ALN
Sbjct: 136 IF---CKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R + R+ R+T ++V ++D +I L +F G ++ C+V +
Sbjct: 94 KLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENG 153
Query: 154 SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
F FV+F + A AALN L TML K + R E E
Sbjct: 154 KSKCFGFVQFDSDDSATAALNALNDTMLD--------GKKLFVSKFVKKCERKEASEETK 205
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAV---AESA 268
VY N+ + + + ++ F G+V + ++ D +R FV F A+ A
Sbjct: 206 FTNVYVKNLGEDLTEDIIRDKFSEF--GKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKA 263
Query: 269 ILALNCSGMVLGSQPIRV 286
+ ALN G +LGS+ + V
Sbjct: 264 VEALN--GAMLGSKKLFV 279
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+YV ++D ++ +++L FSSCGQ+ +V + + F FV F+ A+ AL L
Sbjct: 311 LYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLN 370
Query: 177 GTML 180
GT+L
Sbjct: 371 GTLL 374
>gi|71667313|ref|XP_820607.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70885958|gb|EAN98756.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 424
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGVSK 83
>gi|444525484|gb|ELV14031.1| ELAV-like protein 3 [Tupaia chinensis]
Length = 332
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 27 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 86
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A++ L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 87 KAISTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 132
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 133 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 190
Query: 285 RVSPSKTP 292
V + P
Sbjct: 191 TVKFANNP 198
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D L + FV + D A
Sbjct: 383 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 442
Query: 171 AALN-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 443 KAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMT 485
Query: 227 QAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGS 281
Q E++Q F G + R+L D V S + F+ F AE AI LN +
Sbjct: 486 QKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 543
Query: 282 QPIRVSPSKTP 292
+PI V + P
Sbjct: 544 EPITVKFANNP 554
>gi|340501754|gb|EGR28498.1| ubiquitin-conjugating enzyme family protein, putative
[Ichthyophthirius multifiliis]
Length = 453
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D ++T++V ++ E L F SCG+++D RV F VEFAD G + A
Sbjct: 250 DETQKTIFVGNLSFKTGSEDLRKFFQSCGEIIDARVAQQDGKSRGFGHVEFADVSGVKKA 309
Query: 173 LNLGGTMLGYYPVRV 187
L GG + ++V
Sbjct: 310 LKKGGEEIDGRQIKV 324
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 19/200 (9%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157
GR+ ++ AQ+E+ ++V + + ++ L F G+V D RV +
Sbjct: 110 GRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKS 169
Query: 158 --FAFVEFADEHGARAALN-LGGTMLGYYPVRV--LPSKTAILPVNPTFLPRSEDE--RE 210
+ FV F + A A+ + G L ++V + S A P RS DE E
Sbjct: 170 KGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQP---KRSYDEINNE 226
Query: 211 MCSR--TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
S+ TVY NI K V ++KQ A G + +RL D + AF++F+ ESA
Sbjct: 227 TSSQNCTVYIGNIPKNVESDDLKQLL--AEYGSIEEVRLNKDKGY----AFIKFSKHESA 280
Query: 269 ILA-LNCSGMVLGSQPIRVS 287
A L C+G ++ +R S
Sbjct: 281 TSAILMCNGKIINGSTLRCS 300
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGAR-AALN 174
++V+VS I +++ E L +FS G VV C++ D V + FVEF D AR A N
Sbjct: 43 KSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDN 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ G RV+ + L VN ++ + E++ + ++ + +V + + F
Sbjct: 103 MDG--------RVVYGRE--LKVNWSYTAQQENQ---GNYKIFVGGLQPEVNDDLLYKTF 149
Query: 235 EAACGGEVTRLRLL-----GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
+ G VT R+L G + F+ AE+A+ +N G L + I+V+
Sbjct: 150 QKF--GRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMN--GEKLEGRNIKVNWV 205
Query: 290 KTPVRPRVTRP 300
+ + + +P
Sbjct: 206 TSNIASKTEQP 216
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF---ADEHGAR 170
+ +YV D+D ++E L +FS G +V R+C D S L +A+V F +D A
Sbjct: 28 KAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKAL 87
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A LN T L P+R++ S LP R+ ++ N+D + A +
Sbjct: 88 ACLN--HTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSASL 133
Query: 231 KQFFEAACG-GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
+ F C G + ++ ++ S FV+F +SA ALN
Sbjct: 134 QDIF---CKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R + R+ R+T ++V ++D +I L +F G ++ C+V +
Sbjct: 94 KLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENG 153
Query: 154 SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
F FV+F + A AALN L TM L K + R E E
Sbjct: 154 KSKCFGFVQFDSDDSATAALNALNDTM--------LDGKKLFVSKFVKKCERKEASEETK 205
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAV---AESA 268
VY N+ + + + ++ F G+V + ++ D +R FV F A+ A
Sbjct: 206 FTNVYVKNLGEDLTEDIIRDKFSEF--GKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKA 263
Query: 269 ILALNCSGMVLGSQPIRV 286
+ ALN G +LGS+ + V
Sbjct: 264 VEALN--GAMLGSKKLFV 279
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+YV ++D ++ +++L FSSCGQ+ +V + + F FV F+ A+ AL L
Sbjct: 311 LYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLN 370
Query: 177 GTML 180
GT+L
Sbjct: 371 GTLL 374
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 89 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 136
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 137 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 187
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 100 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 159
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 160 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 208
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 209 NVYIKNFGEEVDDGNLKELFSQF--GKTLSVKVMRDSSGKSKGFGFVSYEKHEDA 261
>gi|71660275|ref|XP_821855.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70887244|gb|EAO00004.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 422
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGVSK 83
>gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 30/188 (15%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A A+
Sbjct: 4 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 63
Query: 174 N-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
N L G L ++V PS +I N +Y + + K + Q E
Sbjct: 64 NTLNGLKLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMSQKE 106
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 107 MEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 164
Query: 285 RVSPSKTP 292
V + P
Sbjct: 165 TVKFANNP 172
>gi|60729607|pir||JC7925 nucleolin - common carp
gi|27804344|gb|AAO22235.1| nucleolin [Cyprinus carpio]
Length = 693
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 24/143 (16%)
Query: 133 LAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191
++ FS G ++ D R+ G +F +V+FA E + AL L G L PV++ +K
Sbjct: 292 ISKFFSKEGLEIQDVRLGGSK----KFGYVDFASEEEMQKALGLNGKKLMGQPVKLDKAK 347
Query: 192 TAILPVNPTFLPRSED-EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL-LG 249
+ S+D ++E +RT++ N+ + Q E+++ FE A T +R+ +G
Sbjct: 348 SK---------EDSQDSKKERDARTLFVKNLPYSITQEELQEVFEQA-----TDIRIPMG 393
Query: 250 DHVHSTRIAFVEF---AVAESAI 269
+ S IA++EF A+AE +
Sbjct: 394 SNGSSRGIAYLEFKSEAIAEKTM 416
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+D N+T+ +L F+ QVV RVC D ++ L + +V +++ A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + L +R+ T+ R R ++ N+DK V + + F
Sbjct: 107 LNYSYLNGKMIRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF 154
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ C G + ++ DH+ +R FV+F +SA A+ +G VL + I V P
Sbjct: 155 -SGC-GTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+YV ++D +T+E+L LF+ G + C+V DP + + FV F+ A LN +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 390 GKMVGGKPLYV 400
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VYV + +++ +ERL G+FS G+ + +V D + F FV F A+ A+
Sbjct: 304 VYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 363
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-VYCTNIDKKVPQAEV 230
++ G ++ + R + + F D C +Y N+D V +
Sbjct: 364 GKDINGQLV--FVGRAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDRL 421
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPS 289
++ F + G ++R++++ + V F+ E A A+ +G VLGS+P+ ++ +
Sbjct: 422 RRAFSSF--GSISRVKVMEEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALA 479
Query: 290 K 290
K
Sbjct: 480 K 480
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 34/186 (18%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ + TE+ L FS G V+ R+C D L +A+V F A+ AL+
Sbjct: 123 SLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDT 182
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-----VYCTNIDKKVPQAE 229
+ + P+R++ S +R+ C R V N+D+ V +
Sbjct: 183 MNFDAVEGKPIRLMWS-----------------QRDACLRKSGVGNVIIKNLDRSV---D 222
Query: 230 VKQFFEAACG-GEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
K +E G G + +++ D S AFV F + A+ AI +N G V+ + +
Sbjct: 223 NKTLYEHFSGFGRILSSKVMSDDQGSKGYAFVHFQSQSAADCAIQEMN--GKVIRDRQVL 280
Query: 286 VSPSKT 291
V+P ++
Sbjct: 281 VAPFRS 286
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V + + + F
Sbjct: 84 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGF 143
Query: 161 VEF-ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F +E G RA + G +L V V FL RSE ++M R
Sbjct: 144 VHFETEEAGIRAIEKVNGMLLNDKKVFV-----------GKFLTRSERIKKMGERVRQFT 192
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAIL 270
VY N K + ++ FE G V + ++ D ++R +A+ A++A+
Sbjct: 193 NVYIKNFGDKYDEKTLQVMFEKY--GVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVE 250
Query: 271 ALN 273
A+N
Sbjct: 251 AMN 253
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD- 71
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+ Y P++ P + +P+ R+ ++ N+DK + + F
Sbjct: 72 ---TMNYDPIKGRPIRIMWSQRDPSL-------RKSGVGNIFIKNLDKSIDNKALYDTFS 121
Query: 236 AACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ + S FV F E+ I A+ +GM+L + + V
Sbjct: 122 AF--GNILSCKVSCNENGSKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVG 172
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+D N+T+ +L F+ QVV RVC D ++ L + +V +++ A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + L +R+ T+ R R ++ N+DK V + + F
Sbjct: 107 LNYSYLNGKMIRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF 154
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ C G + ++ DH+ +R FV+F +SA A+ +G VL + I V P
Sbjct: 155 -SGC-GTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+YV ++D +T+E+L LF+ G + C+V DP + + FV F+ A LN +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 390 GKMVGGKPLYV 400
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDGNLKELFSQF--GKTLSVKVMRDSSGKSKGFGFVSYEKHEDA 244
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F+ E +A + G ++G P+ V L + ++ER+ Y
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVA-------------LAQRKEERKAHLTNQYMQ 384
Query: 220 NID--KKVPQAEVKQFFEAACGG 240
+ + +P + + F+ A GG
Sbjct: 385 RVAGMRALPASAILNQFQPAAGG 407
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|449279242|gb|EMC86877.1| Squamous cell carcinoma antigen recognized by T-cells 3, partial
[Columba livia]
Length = 875
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 32/211 (15%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNIT--EERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
+ F +DSV TV+VS++ + E +L LF SCG+V R R + ++
Sbjct: 606 KVFHDSSKDSV--TVFVSNLSYTMADPEAKLKELFESCGEVAQIRPVFSNKGTFRGYCYI 663
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF +E A AL L ++ P+ V P NP F Y T +
Sbjct: 664 EFKEEKSALQALGLDRRVVEGRPMFVSPCVDK--NKNPDF-----------KVFRYSTTL 710
Query: 222 DKK------VPQAEVKQFFEAACG--GEVTRLRLLGDHVHSTR-IAFVEF---AVAESAI 269
+K +P + K+ E C G V +RL+ + + +A+VEF A A A+
Sbjct: 711 EKHKLFISGLPFSCTKEELEEVCKAHGNVKDIRLVTNRAGKPKGLAYVEFENEAQASQAV 770
Query: 270 LALNCSGMVLGSQPIRVSPSKTPVRPRVTRP 300
L ++ G+ + I+V+ S P+R +P
Sbjct: 771 LKMD--GLTVKEHVIKVAISNPPLRKLPDKP 799
>gi|195014784|ref|XP_001984080.1| GH15204 [Drosophila grimshawi]
gi|193897562|gb|EDV96428.1| GH15204 [Drosophila grimshawi]
Length = 643
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
VYV I + E+ + F+ G + + DP + FAFVE+ GA+ AL +
Sbjct: 134 VYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 193
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
G ++G ++V + + +P + ++E + +R +Y +I + + ++K FE
Sbjct: 194 NGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLSEDDIKSVFE 250
Query: 236 AACGGEVTRLRLL-GDHVHSTR-IAFVEFA---VAESAILALNCSGMVLGSQPIRVSPSK 290
A G + +L G VH+ + F+E+A + AI ++N LG Q +RV S
Sbjct: 251 AF--GPILYCKLAQGSSVHTHKGYGFIEYANKQAMDEAIASMNL--FDLGGQLLRVGRSI 306
Query: 291 TP 292
TP
Sbjct: 307 TP 308
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|115433970|ref|NP_001041743.1| Os01g0101600 [Oryza sativa Japonica Group]
gi|52076599|dbj|BAD45501.1| nuclear protein -like [Oryza sativa Japonica Group]
gi|113531274|dbj|BAF03657.1| Os01g0101600 [Oryza sativa Japonica Group]
gi|125568671|gb|EAZ10186.1| hypothetical protein OsJ_00013 [Oryza sativa Japonica Group]
gi|215712245|dbj|BAG94372.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768572|dbj|BAH00801.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 978
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG + + D +++ V +S++ +T + + LF CG+VVDC + H A+VE
Sbjct: 344 SGSTDKTDKGDVLKKMVQISNLSPLLTVDHIKQLFGYCGKVVDCTITDSKH----IAYVE 399
Query: 163 FADEHGARAALNLGGTMLGYYPVRV-----LPSKTAI 194
++ + A AAL L +G P+ V LP KT +
Sbjct: 400 YSKQEEATAALALNNMDVGGRPLNVEMAKSLPPKTNL 436
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
VY+ + + + +E L LF G+ + +V DP+ + F FV + A +A +
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAEVKQ 232
G + + V ++ + + ++E SR +Y N+D + ++++
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 313 EFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
>gi|343474220|emb|CCD14084.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 757
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+RL G RA D + RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 92 RQRLVGE--RAVETDVIARTVHLRFLPTGMLQSELAALCAECGEYLRVRICGNSTTTQNW 149
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 150 IYGFVEFADRAGAAAMMRRSGMELPNGPGKPPLRL 184
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|391865004|gb|EIT74296.1| RNA-binding protein [Aspergillus oryzae 3.042]
Length = 1290
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
D N + A+ FN+ R Q R + S F + + T++V++ E +
Sbjct: 865 GDGNSEVAVIEFNS--RDEALVAQTRDQKSLDGFTIEVQIGTCSTLFVTNFPPEADENYI 922
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
GLF G+++D R ++ RF +V+F A +A L GT +G K
Sbjct: 923 RGLFREYGEIIDVRFPSLKYNTHRRFCYVQFKTAEAAHSATKLDGTTVG---------KG 973
Query: 193 AILPVNPTFLPRSEDEREMC--SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD 250
L + R +D R ++ +N+D K + +V++ F E+ RL D
Sbjct: 974 LTLTAKISDPSRKQDRHGPIYEGREIHVSNVDFKASERDVQELFSKYGTVELVRLPRKVD 1033
Query: 251 HVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
S +V F+ E A AL G S+ + V
Sbjct: 1034 G-GSKGFGYVVFSNKEEATAALAMDGQEYRSRTLHV 1068
>gi|351694381|gb|EHA97299.1| ELAV-like protein 3, partial [Heterocephalus glaber]
Length = 344
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 32 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 91
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 92 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 137
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 138 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 195
>gi|317156878|ref|XP_001826075.2| pre-mRNA splicing factor (Prp24) [Aspergillus oryzae RIB40]
Length = 1289
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
D N + A+ FN+ R Q R + S F + + T++V++ E +
Sbjct: 864 GDGNSEVAVIEFNS--RDEALVAQTRDQKSLDGFTIEVQIGTCSTLFVTNFPPEADENYI 921
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
GLF G+++D R ++ RF +V+F A +A L GT +G K
Sbjct: 922 RGLFREYGEIIDVRFPSLKYNTHRRFCYVQFKTAEAAHSATKLDGTTVG---------KG 972
Query: 193 AILPVNPTFLPRSEDEREMC--SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD 250
L + R +D R ++ +N+D K + +V++ F E+ RL D
Sbjct: 973 LTLTAKISDPSRKQDRHGPIYEGREIHVSNVDFKASERDVQELFSKYGTVELVRLPRKVD 1032
Query: 251 HVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
S +V F+ E A AL G S+ + V
Sbjct: 1033 G-GSKGFGYVVFSNKEEATAALAMDGQEYRSRTLHV 1067
>gi|238492991|ref|XP_002377732.1| pre-mRNA splicing factor (Prp24), putative [Aspergillus flavus
NRRL3357]
gi|220696226|gb|EED52568.1| pre-mRNA splicing factor (Prp24), putative [Aspergillus flavus
NRRL3357]
Length = 1290
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
D N + A+ FN+ R Q R + S F + + T++V++ E +
Sbjct: 865 GDGNSEVAVIEFNS--RDEALVAQTRDQKSLDGFTIEVQIGTCSTLFVTNFPPEADENYI 922
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
GLF G+++D R ++ RF +V+F A +A L GT +G K
Sbjct: 923 RGLFREYGEIIDVRFPSLKYNTHRRFCYVQFKTAEAAHSATKLDGTTVG---------KG 973
Query: 193 AILPVNPTFLPRSEDEREMC--SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD 250
L + R +D R ++ +N+D K + +V++ F E+ RL D
Sbjct: 974 LTLTAKISDPSRKQDRHGPIYEGREIHVSNVDFKASERDVQELFSKYGTVELVRLPRKVD 1033
Query: 251 HVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
S +V F+ E A AL G S+ + V
Sbjct: 1034 G-GSKGFGYVVFSNKEEATAALAMDGQEYRSRTLHV 1068
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D ++TE L +F+S V R+C D + L +A+V + A A
Sbjct: 10 VSASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T + P R++ + R R V+ N+DK + + K
Sbjct: 70 LDTLNFTCIRSRPCRIM------------WCLRDPASRRNNEGNVFVKNLDKSI---DNK 114
Query: 232 QFFEA-ACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
F+ + G + ++ D +S F+ F ESA A+ +GM+LG +PI V
Sbjct: 115 TLFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYV 172
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +++ F G+ ++++ D S FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQF--GKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 244
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
VY+ + + + +E L LFS G+ + +V D + F FV + A +A +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAEVKQ 232
G + + V ++ + + ++E SR +Y N+D + ++++
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 313 EFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
+++V +D ++ E+RL F G V RVC D L + +V F D A AL+
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GT LG +R+ + R +R + + K V +K+ F
Sbjct: 69 AGTKLGSRYLRIAK------------IQRDPSKRRSGVNNILVKKLPKTVDTYALKELFS 116
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G +T + L D +R A + F ESA+ A+ GM + Q I V
Sbjct: 117 KF--GRLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVV 167
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|343474538|emb|CCD13844.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 757
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+RL G RA D + RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 92 RQRLVGE--RAVETDVIARTVHLRFLPTGMLQSELAALCAECGEYLRVRICGNSTTTQNW 149
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 150 IYGFVEFADRAGAAAMMRRSGMELPNGPGKPPLRL 184
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F+ G+ ++++ D +R F+ + E A
Sbjct: 192 NVYIKNFGDDMNDERLKELFDKY--GKTLSVKVMTDPTGKSRGFGFISYEKHEDA 244
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ +++ ++D++I + L FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDERG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F E A RA + G +L V V F R E E E+ S
Sbjct: 137 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFV-----------GHFKSRKEREEELGS 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAES 267
+ +Y N + ++K+ F A G +R++ D +R FV FA E
Sbjct: 186 KALKFTNIYIKNFGEDYNDEKLKEVF--AAFGRTLSVRVMKDERGRSRGFGFVNFAHHED 243
Query: 268 AILALN 273
A A++
Sbjct: 244 AQKAVD 249
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ ++ N+D+ + + F
Sbjct: 72 MNYDVIKGRPIRIMWSQ------------RDPGLRKSGVGNIFIKNMDESIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
A G + +++ D S FV F E+A A+ +GM+L + + V K+
Sbjct: 120 SAF--GNILSCKVVCDERGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKS 175
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 72 NFAD-DNKQSAIDNFNNNRRRRNNFNQGR--KRLS-----GRAFRAQREDSVRR----TV 119
NFA ++ Q A+D N GR KRL R F ++D ++R +
Sbjct: 237 NFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNL 296
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGT 178
YV ++D +I +ERL F+ G + +V D F FV F+ E +A + G
Sbjct: 297 YVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGR 356
Query: 179 MLGYYPVRV 187
++ P+ V
Sbjct: 357 IVATKPLYV 365
>gi|195391714|ref|XP_002054505.1| GJ22770 [Drosophila virilis]
gi|194152591|gb|EDW68025.1| GJ22770 [Drosophila virilis]
Length = 401
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 69 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 128
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
G LG + R P+ A + + P ++ + TVYC I+ +
Sbjct: 129 NGQWLGSRSIRTNWATRKPPATKADMNIKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 188
Query: 230 VKQFFEAACG--GEVTRLRLLGDHVHSTRIAFVEFAVAES---AILALNCSGMVLGSQPI 284
++ + G + +R+ D + AFV F+ E+ AI+A+N + + QP+
Sbjct: 189 NEEILQKTFSPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAIVAVNNT--EINQQPV 242
Query: 285 RVSPSK 290
+ + K
Sbjct: 243 KCAWGK 248
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E +L LF+ V RVC D L +A+V FA+ A A++
Sbjct: 59 SLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMD-- 116
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P+R P + + +P+ R V+ N+D + + + F A
Sbjct: 117 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDPSIDNKALYETFSA 167
Query: 237 ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G + ++ D V ++ FV+F E+A A++ +GM+L + + V
Sbjct: 168 F--GTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 217
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
R + R+ S R + V++ ++D +I + L FS+ G ++ C+V D +V R
Sbjct: 129 RIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMD--AVGRSKG 186
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT- 215
+ FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 187 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRSRSESGAVP 235
Query: 216 ----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAIL 270
VY N+ K++ E+K+ F G+++ ++ D ++R FV F E+A +
Sbjct: 236 RFTNVYVKNLPKEITDDELKKTF--GKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAV 293
Query: 271 AL-NCSGMVLG 280
A+ +G+ LG
Sbjct: 294 AVEKMNGISLG 304
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 19/103 (18%)
Query: 104 GRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSSCGQVVDC 146
GRA +++RE+ +RR +Y+ ++D ++ +E+L +FS G V C
Sbjct: 311 GRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 370
Query: 147 RVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+V + + R F FV ++ E +RA + G M+G P+ V
Sbjct: 371 KVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYV 413
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L FS+ G V+ R+C D L +A+V F A+ AL+
Sbjct: 3 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + + F
Sbjct: 63 MNFDMIKGKPIRLMWSQ------------RDAYLRKSGIGNVFIKNLDKSIDNKTLYEHF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAILALN 273
A G++ +++ D S AFV F A+ AI +N
Sbjct: 111 SAF--GKILSSKVMSDDQGSRGYAFVHFQNQNAADRAIEEMN 150
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ V++ ++D++I + L FS+ G+++ +V D +AF
Sbjct: 74 RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGYAF 133
Query: 161 VEFADEHGA-RAALNLGGTML 180
V F +++ A RA + G +L
Sbjct: 134 VHFQNQNAADRAIEEMNGALL 154
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 99 RKRLS-GRAFRAQREDSVRR-TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHS 154
R RL+ GR+ E R+ ++YV D+ ++TE+ L FS+ G V+ R+C D
Sbjct: 89 RDRLTVGRSKEMNVEAKYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRR 148
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
L +A+V F A+ AL+ + M+ P+R++ S+ R R+
Sbjct: 149 SLGYAYVNFLKLADAQKALDTMNFDMIKGKPIRLMWSQ------------RDAYLRKSGI 196
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFA---VAESAIL 270
V+ N+DK + + + F A G++ +++ D S AFV F A+ AI
Sbjct: 197 GNVFIKNLDKSIDNKTLYEHFSAF--GKILSSKVMSDDQGSRGYAFVHFQNQNAADRAIE 254
Query: 271 ALN 273
+N
Sbjct: 255 EMN 257
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VYV + ++ +ERL +FS G+ + +V D + F FV F A+ A+
Sbjct: 291 VYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMN 350
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC-SRTVYCTNIDKKVPQAEV 230
++ G +L + R + F ++ C +Y N+D + +
Sbjct: 351 GKDVNGQLL--FVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTID--DE 406
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPS 289
K + E + G ++R++++ + S + F+ E A A+ +G +LGS+P+ ++ +
Sbjct: 407 KLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALA 466
Query: 290 KTP 292
+ P
Sbjct: 467 QRP 469
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ V++ ++D++I + L FS+ G+++ +V D +AF
Sbjct: 181 RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGYAF 240
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F +++ A RA + G +L K L V F R + E E+ ++
Sbjct: 241 VHFQNQNAADRAIEEMNGALL----------KDCRLFVG-RFKNRKDREAELQNKVNEFT 289
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F G+ ++++ D ++ FV F E+A
Sbjct: 290 NVYVKNFGDDMDDERLKEVFSKY--GKTLSVKVMTDSGGKSKGFGFVSFDSHEAA 342
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN- 174
R +YV ++D++ITE+ L F GQ+VD +V D S + +AFVE+A H A AL
Sbjct: 79 RVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVNYAFVEYAKAHDASVALQT 138
Query: 175 LGGTMLGYYPVRV 187
L G + V++
Sbjct: 139 LNGIQIENNKVKI 151
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAES 267
RE R +Y N+DK + + +KQ+F+ A G++ ++++ D + AFVE+A A
Sbjct: 74 RETSDRVLYVGNLDKSITEDILKQYFQVA--GQIVDVKVMIDKKSNYVNYAFVEYAKAHD 131
Query: 268 AILALNC 274
A +AL
Sbjct: 132 ASVALQT 138
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + + G +A
Sbjct: 56 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D S++ FV + E+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVG 216
>gi|13096196|pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
gi|13096204|pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 30/179 (16%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L 175
+ V+ + QN+T+E LF S G++ C++ D + L + FV + D A A+N L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 176 GGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
G L ++V PS +I N +Y + + K + Q E++Q
Sbjct: 65 NGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMTQKELEQ 107
Query: 233 FFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
F G + R+L D V S + F+ F AE AI LN ++PI V
Sbjct: 108 LFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164
>gi|297802818|ref|XP_002869293.1| F27F5.17 [Arabidopsis lyrata subsp. lyrata]
gi|297315129|gb|EFH45552.1| F27F5.17 [Arabidopsis lyrata subsp. lyrata]
Length = 523
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 22/190 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLRFAFVEFADEHGARA 171
D V V VS++ + G F+ +VV R V + + FVEFA +GA
Sbjct: 171 DFVEEVVIVSNLSPQTKIAHIKGFFNDVAEVVSVRLVVNHEGKHVGYGFVEFASAYGANK 230
Query: 172 ALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL G L + + ++ + P F+ E ++T++ N+ + +++
Sbjct: 231 ALEEKNGDYLHDHQILLMRGHES-----PGFV-----EEAAITKTLFVANLCDTIKISDI 280
Query: 231 KQFFEAACGGEVTRLRLL----GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
FF+ GEV +RL+ G H FVEFA A A AL +G L + I +
Sbjct: 281 INFFKDV--GEVVHVRLVVNSQGKH---AGWGFVEFASANEAEKALVKNGEYLHNYKISL 335
Query: 287 SPSKT-PVRP 295
+KT P RP
Sbjct: 336 DVAKTAPYRP 345
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAAL-NL 175
T++VS + + + FS G+VV R+C LR FVEF A A+
Sbjct: 68 TLFVSGLSRQTKISDIIDFFSDVGEVVHVRICITHEGRRLRSGFVEFTSASEANKAMEKK 127
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP-----TF----LPRSEDER--EMCSRTVYCTNIDKK 224
G L + + ++T P P +F LP EDE + V +N+ +
Sbjct: 128 NGEYLHDQEISLRVAQTT--PYRPPKNHDSFQLESLPIEEDETPLDFVEEVVIVSNLSPQ 185
Query: 225 VPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL 272
A +K FF EV +RL+ +H FVEFA A A AL
Sbjct: 186 TKIAHIKGFFNDV--AEVVSVRLVVNHEGKHVGYGFVEFASAYGANKAL 232
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-NL 175
+YV D+ +++ EE L +F G + RVC D + LR+ +V + + A AL L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+++ P+RV+ S R D R V+ N++ V +++ F
Sbjct: 100 NHSLILDKPIRVMWSN------------RDPDARRSGVGNVFVKNLNDLVDNVSLQELF- 146
Query: 236 AACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
C G++ ++ + ++R FV+FA+ ESA
Sbjct: 147 --CKFGDILSCKVAKNEDGTSRGYGFVQFALQESA 179
>gi|47219575|emb|CAG02281.1| unnamed protein product [Tetraodon nigroviridis]
Length = 351
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 49/213 (23%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 2 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 60
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 61 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 106
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--------------------------STRIAFVEF 262
E++Q F G + R+L D V S + F+ F
Sbjct: 107 ELEQLFSQY--GRIITSRILVDQVTGGSLTLSAGAPRAGRWLTVLSAPAGVSRGVGFIRF 164
Query: 263 ---AVAESAILALNCSGMVLGSQPIRVSPSKTP 292
AE AI LNC ++PI V + P
Sbjct: 165 DRRVEAEEAIKGLNCQKPPGATEPITVKFANNP 197
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
RTV+V + I + L F+S G++ D R+ D + A+VEF + A+ AL
Sbjct: 104 RTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLALG 163
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPT-FLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L GT L P+++ S V+ T LPR + + + +Y ++ + + +K
Sbjct: 164 LTGTRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQNKGPMK-LYIGSLHYNITEEMLKGI 222
Query: 234 FEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
FE G++ ++L+ D S FV + ++ A AL+ +G L +P++V
Sbjct: 223 FEPF--GKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMKV 276
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF 262
S +ER+ +RTV+ + ++ Q +++ FF + G++ +RL+ D+ S IA+VEF
Sbjct: 97 SPEERD--ARTVFVWQLSARIRQRDLEDFFTSV--GKIRDVRLIMDNKTKRSKGIAYVEF 152
Query: 263 AVAESAILALNCSGMVLGSQPIRVSPS-----KTPVRPRVTRP 300
ESA LAL +G L PI++ S + P + RP
Sbjct: 153 REVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSATPSLPRP 195
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|7767662|gb|AAF69159.1|AC007915_11 F27F5.17 [Arabidopsis thaliana]
Length = 501
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 22/190 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLRFAFVEFADEHGARA 171
D V V VS++ + G F+ QVV R V + + FVEFA +GA
Sbjct: 158 DFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANK 217
Query: 172 AL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL G L + + ++ + P F E ++T++ N+ + +++
Sbjct: 218 ALEEKNGEYLHNHKILLMKGHES-----PGFA-----EEAAITKTLFVANLRDSIQISDI 267
Query: 231 KQFFEAACGGEVTRLRLL----GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
FF+ GEV +RL+ G H FVEFA A A AL +G L + I +
Sbjct: 268 INFFKDV--GEVVHVRLIVNSQGKH---AGWGFVEFASANEAEKALVKNGEYLHNYKISL 322
Query: 287 SPSKT-PVRP 295
+KT P RP
Sbjct: 323 DGAKTAPHRP 332
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 89 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 136
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 137 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 187
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 100 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 159
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 160 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 208
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 209 NVYIKNFGEEVDDGNLKELFSQF--GKTLSVKVMRDSSGKSKGFGFVSYEKHEDA 261
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 295 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGF 354
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F+ E +A + G ++G P+ V L + ++ER+ Y
Sbjct: 355 VCFSSPEEATKAVTEMNGRIVGSKPLYVA-------------LAQRKEERKAHLTNQYMQ 401
Query: 220 NID--KKVPQAEVKQFFEAACGG 240
+ + +P + + F+ A GG
Sbjct: 402 RVAGMRALPASAILNQFQPAAGG 424
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +++ F G+ ++++ D S FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQF--GKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 244
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
VY+ + + + +E L LFS G+ + +V D + F FV + A +A +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAEVKQ 232
G + + V ++ + + ++E SR +Y N+D + ++++
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 313 EFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|343471164|emb|CCD16349.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 369
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+RL G RA D + RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 92 RQRLVGE--RAVETDVIARTVHLRFLPTGMLQSELAALCAECGEYLRVRICGNSTTTQNW 149
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 150 IYGFVEFADRAGAAAMMRRSGMELPNGPGKPPLRL 184
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 63 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSKT 291
A G + +++ D S AFV F E+A A+ +GM+L + + V K+
Sbjct: 111 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 166
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 133
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 134 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 182
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 183 NVYIKNFGEEVDDDNLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 235
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL---- 173
VY+ + ++ +ERL +FS G++V +V D + F FV F A+ A+
Sbjct: 192 VYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMN 251
Query: 174 --NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC-SRTVYCTNIDKKVPQAEV 230
++ G M+ + + A L L R R C +Y N+D+ + + ++
Sbjct: 252 GKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGR--CRGVKLYIKNLDETIDEEQL 309
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPS 289
++ F + G ++R++++ + S + F+ E A A+ +G VLGS+ I ++ +
Sbjct: 310 RRAFSSF--GSMSRVKVMEEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAINIALA 367
Query: 290 KTP 292
+ P
Sbjct: 368 QRP 370
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 103 SGRAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
S R +QR+ +R++ V++ ++D++I + L FS+ G+++ +V D +
Sbjct: 80 SIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKGSRGY 139
Query: 159 AFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-- 215
AFV F + A RA + G +L K L V P F R E E E+ ++
Sbjct: 140 AFVHFQSQSAADRAIEEMNGALL----------KNCRLFVGP-FKNRKEREAELQNKANE 188
Query: 216 ---VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F G++ ++++ D ++ FV F E+A
Sbjct: 189 FTNVYIKNFGDDMDDERLKEVFSQY--GKIVSVKVMTDSSGKSKGFGFVSFDTHEAA 243
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 22/179 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L F+ G V+ R+C D L +A+V F + A+ L+
Sbjct: 11 SLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ +R++ S+ R R+ V+ N+D+ + + + F
Sbjct: 71 MNFDMIQGKSIRLMWSQ------------RDAYLRKSGIGNVFIKNLDRSIDNKMLYEHF 118
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSPSK 290
A G++ +++ D S AFV F + A+ AI +N G +L + + V P K
Sbjct: 119 SAF--GKILSSKVMSDDKGSRGYAFVHFQSQSAADRAIEEMN--GALLKNCRLFVGPFK 173
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+RR+ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEFGAKAREFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
VY N + ++++FE G ++ ++ + S FV F E A A++
Sbjct: 192 NVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVD 250
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++Y+ D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R ++ N+DK + + F
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRRSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVL 279
A G + +++ D S FV F E+A A+ +GM+L
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAADKAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 40/186 (21%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT---------------- 118
++ Q A+D N GR GRA +A+R+ ++R
Sbjct: 243 EDAQKAVDEMNTKEL------NGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVN 296
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGG 177
+YV ++D NI +ERL FS G + +V + F FV F+ E +A + G
Sbjct: 297 LYVKNLDDNINDERLWKEFSPFGTITSAKVMMEEGRSRGFGFVCFSSPEEATKAVTEMNG 356
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY---CTNIDKKVPQAEVKQFF 234
++G P+ V L + ++ER+M + + + P A + Q+
Sbjct: 357 RIIGSKPLYVA-------------LAQRKEERKMHLTSQFMQRLAGMRAVPPSAIIGQYQ 403
Query: 235 EAACGG 240
AA G
Sbjct: 404 PAAASG 409
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ + P+R++ S+ R R+ V+ N+DKK+ + F
Sbjct: 72 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKKIDNKAMYDTF 119
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + ++ D S FV F ESA ++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFV 171
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA-RAALNLGG 177
VYV + +++TEE L +F G + RV F FV F + A RA L
Sbjct: 194 VYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQELNA 253
Query: 178 TMLG----YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAE 229
L Y R + + F + + E +R +Y N+D +
Sbjct: 254 KELSDGKVLYVGRAQKKNERQMELKRRF---EQLKMERLTRYHGVNLYVKNLDDTIDDER 310
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
+++ F A G +T +++ D S FV F+ + A A+ +G ++GS+P+ V+
Sbjct: 311 LRKEF--APYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVA 367
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 19/200 (9%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157
GR+ ++ AQ+E+ ++V + + ++ L F G+V D RV +
Sbjct: 110 GRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKS 169
Query: 158 --FAFVEFADEHGARAALNL--GGTMLGY-YPVRVLPSKTAILPVNPTFLPRSEDE--RE 210
+ FV F + A A+ + G + G V + S A P RS DE E
Sbjct: 170 KGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQP---KRSYDEINNE 226
Query: 211 MCSR--TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
S+ TVY NI K V ++KQ A G + +RL D + AF++F+ ESA
Sbjct: 227 TSSQNCTVYIGNIPKNVESDDLKQLL--AEYGSIEEVRLNKDKGY----AFIKFSKHESA 280
Query: 269 ILA-LNCSGMVLGSQPIRVS 287
A L C+G ++ +R S
Sbjct: 281 TSAILMCNGKIINGSTLRCS 300
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGAR-AALN 174
++V+VS I +++ E L +FS G VV C++ D V + FVEF D AR A N
Sbjct: 43 KSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDN 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ G RV+ + L VN ++ + E++ + ++ + +V + + F
Sbjct: 103 MDG--------RVVYGRE--LKVNWSYTAQQENQ---GNYKIFVGGLQPEVNDDLLYKTF 149
Query: 235 EAACGGEVTRLRLL-----GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
+ G VT R+L G + F+ AE+A+ +N G L + I+V+
Sbjct: 150 QKF--GRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMN--GEKLEGRNIKVNWV 205
Query: 290 KTPVRPRVTRP 300
+ + + +P
Sbjct: 206 TSNIASKTEQP 216
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|413942544|gb|AFW75193.1| hypothetical protein ZEAMMB73_807044 [Zea mays]
gi|413942545|gb|AFW75194.1| hypothetical protein ZEAMMB73_807044 [Zea mays]
Length = 823
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT++V +I+ N+ + L LF G D R F + + D AR A+
Sbjct: 174 RTLFVRNINSNVEDSELRSLFEQYG---DIRTLYTATKHRGFVMISYFDIRAARNAMR-- 228
Query: 177 GTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L P+R L +I NP+ ++++ T+ N+D V EV+Q F
Sbjct: 229 --ALQNKPLRRRKLDIHFSIPKENPS-------DKDLNQGTLVIFNLDPSVSNEEVRQIF 279
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
A GEV +R + H I F + AE+A+ +LN S + + I++ PS R
Sbjct: 280 GAY--GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS--EIAGKRIKLEPS----R 331
Query: 295 PRVTR 299
P TR
Sbjct: 332 PGGTR 336
>gi|321471820|gb|EFX82792.1| hypothetical protein DAPPUDRAFT_302363 [Daphnia pulex]
Length = 841
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLG 176
TV++S++ +E+ + + SS G + D R+ D + F FVEF+ + ARA L
Sbjct: 603 TVFLSNLAYETSEQDVRNMMSSSGTITDIRLVLDYKQRCKGFCFVEFSSQDEARAVLKRD 662
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
++ PV + PS+ +P F +S E++ + K+ +A K+F
Sbjct: 663 RELMKGRPVFMSPSEPDAALKHPAFKYQSTLEKKKLFIKGLALSTTKEDLEALFKKF--- 719
Query: 237 ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVR 294
G + +RL+ S + +A+VEF SA +ALN G + + V+ S P R
Sbjct: 720 ---GILKDVRLVTFRNGSPKGLAYVEFEDEVSATMALNQTDGTTFQDKVLTVALSNPPPR 776
>gi|255582384|ref|XP_002531981.1| Protein gar2, putative [Ricinus communis]
gi|223528378|gb|EEF30417.1| Protein gar2, putative [Ricinus communis]
Length = 436
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 19/185 (10%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGA 169
EDS + VYV I TEE + F CG + VDC D A + F E A
Sbjct: 177 EDSATK-VYVGGIPYYSTEEDIRSYFEGCGTITEVDCMTFPDSGKFRGIAIIGFKTEAAA 235
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE-----REMCSRTVYCTNIDKK 224
+ AL L G+ +G + +++ P KT TF + + E +R +Y N+
Sbjct: 236 KRALALDGSDMGGFFLKIQPYKT-----TRTFQAKKVSDFAPKIVEGYNR-IYVGNLSWD 289
Query: 225 VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAF--VEFAVAESAILALNCSGMVLGSQ 282
+ + ++++FF G +++ +R D + VEF+ S ++AL ++ +
Sbjct: 290 ITEEDLRKFFS---GCKISSVRWGTDKETGEFRGYGHVEFSDNLSLLMALKLDQQIVCGR 346
Query: 283 PIRVS 287
I++S
Sbjct: 347 AIKIS 351
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-NL 175
+YV D+ +++ EE L +F G + RVC D + LR+ +V + + A AL L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+++ P+RV+ S R D R V+ N++ V +++ F
Sbjct: 100 NHSLILDKPIRVMWSN------------RDPDARRSGVGNVFVKNLNDLVDNVSLQELF- 146
Query: 236 AACG-GEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
C G++ ++ + ++R FV+FA+ ESA
Sbjct: 147 --CKFGDILSCKVAKNEDGTSRGYGFVQFALQESA 179
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D NITE L +FS G + RVC D + L +A+V + D E G +A
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + P R++ S+ R R+ S ++ N+ + + + F
Sbjct: 111 LNYAEINGRPCRIMWSE------------RDPAIRKKGSGNIFIKNLHPAIDNKALHETF 158
Query: 235 EAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
+ GEV ++ D ++R + F E + A+ AI A+N GM++ + V+
Sbjct: 159 --STFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN--GMLMNGLEVYVA-MH 213
Query: 291 TPVRPRVTR 299
P + R+++
Sbjct: 214 VPKKDRISK 222
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 114/294 (38%), Gaps = 62/294 (21%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLA----------KEFFPSYYHQHTDHHFSVI 69
N N +L + + T L D+F+ L P++ K Y +TD+
Sbjct: 47 NNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAG-- 104
Query: 70 NNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR---AQREDSVRR----TVYVS 122
+ AI N ++GR R ++R+ ++R+ +++
Sbjct: 105 ---------KKAIQELN------------YAEINGRPCRIMWSERDPAIRKKGSGNIFIK 143
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTML 180
++ I + L FS+ G+V+ C+V D + R F FV F +E A+ A+ + G ++
Sbjct: 144 NLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLM 203
Query: 181 GYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
V V +P K I + +E + +Y NID + E +Q F
Sbjct: 204 NGLEVYVAMHVPKKDRISKL---------EEAKANFTNIYVKNIDVETTDEEFEQLFSQY 254
Query: 238 CGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
GE+ L D + + FV+ A A+ LN G SQ + V
Sbjct: 255 --GEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN--GKEFKSQALYVG 304
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDGNLKELFSQF--GKTLSVKVMRDSSGKSKGFGFVSYEKHEDA 244
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N +++ +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEMDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +++ F
Sbjct: 192 NVYIKNFGEEVDDENLRELF 211
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
VY+ + + + +E L LFS G+ + +V D + F FV + A +A +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAEVKQ 232
G + + V ++ + + ++E SR +Y N+D + ++++
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 313 EFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|320163233|gb|EFW40132.1| RNA binding domain-containing protein 39 [Capsaspora owczarzaki
ATCC 30864]
Length = 600
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGT 178
VYV +D +TE + LFS CG+V+ + D +AFV+FAD A+ A+ L G
Sbjct: 357 VYVGSLDFALTEADVKSLFSPCGEVISVTLNRDNGKSKGYAFVQFADAGAAKLAMELNGV 416
Query: 179 MLGYYPVRV 187
+ P++V
Sbjct: 417 EVAGRPLKV 425
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCS 275
VY ++D + +A+VK F + CG EV + L D+ S AFV+FA A +A LA+ +
Sbjct: 357 VYVGSLDFALTEADVKSLF-SPCG-EVISVTLNRDNGKSKGYAFVQFADAGAAKLAMELN 414
Query: 276 GMVLGSQPIRVSPSKTP 292
G+ + +P++V+ + P
Sbjct: 415 GVEVAGRPLKVNFATDP 431
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDGNLKELFSQF--GKTLSVKVMRDSSGKSKGFGFVSYEKHEDA 244
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F+ E +A + G ++G P+ V L + ++ER+ Y
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVA-------------LAQRKEERKAHLTNQYMQ 384
Query: 220 NID--KKVPQAEVKQFFEAACGG 240
+ + +P + + F+ A GG
Sbjct: 385 RVAGMRALPASAILNQFQPAAGG 407
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|242094342|ref|XP_002437661.1| hypothetical protein SORBIDRAFT_10g000350 [Sorghum bicolor]
gi|241915884|gb|EER89028.1| hypothetical protein SORBIDRAFT_10g000350 [Sorghum bicolor]
Length = 822
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT++V +I+ N+ + L LF G D R F + + D AR A+
Sbjct: 174 RTLFVRNINSNVEDSELRSLFEQYG---DIRTLYTATKHRGFVMISYFDIRAARNAMR-- 228
Query: 177 GTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L P+R L +I NP+ ++++ T+ N+D V EV+Q F
Sbjct: 229 --ALQNKPLRRRKLDIHFSIPKENPS-------DKDLNQGTLVIFNLDPSVSNEEVRQIF 279
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
A GEV +R + H I F + AE+A+ +LN S + + I++ PS R
Sbjct: 280 GAY--GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS--EIAGKRIKLEPS----R 331
Query: 295 PRVTR 299
P TR
Sbjct: 332 PGGTR 336
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N +++ +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEMDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|357610697|gb|EHJ67099.1| TIA-1-related RNA binding protein [Danaus plexippus]
Length = 388
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D ++TEE L LF G+V C++ +P + +AF+EF + A
Sbjct: 3 DESHPKTLYVGNLDASVTEEFLCALFGQIGEVKGCKIIREPGND-PYAFLEFTNHASAAT 61
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVYCTNIDKKVPQAEV 230
AL RV K + VN P ++ + + + ++ ++ ++ +
Sbjct: 62 ALAAMNR-------RVFLEKE--MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETHIL 112
Query: 231 KQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEF---AVAESAILALNCSGMVLGSQPIR 285
++ F A GE++ R++ D + S AFV F A AE+AI A+N G LGS+ IR
Sbjct: 113 REAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIR 168
Query: 286 VS------PSKTP 292
+ P+K P
Sbjct: 169 TNWSTRKPPTKGP 181
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 93
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 94 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 141
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 142 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 192
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 105 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 164
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 165 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 213
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 214 NVYIKNFGEEVDDDNLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 266
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F+ G+ ++++ D +R FV + E A
Sbjct: 192 NVYIKNFGDDMDDERLKEIFDKY--GKTLSVKVMTDPSGKSRGFGFVSYEKHEDA 244
>gi|340055809|emb|CCC50130.1| conserved hypothetical protein, fragment, partial [Trypanosoma
vivax Y486]
Length = 657
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
RKRL A + D + RTV++ + + + + LA L + CG+ + R+CG+ S
Sbjct: 88 RKRLVEE--DAVKTDLLARTVHLRFLPKGMLQSELAALCAECGEYLRVRICGNATSTQNW 145
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRVL 188
+ FVEFAD+ GA A + G L G P+R++
Sbjct: 146 IYGFVEFADKQGAAAMMRRSGMELSNGPGKPPLRLM 181
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F G+ ++++ D ++ FV F E A
Sbjct: 192 NVYIKNFGDDMDDGRLKELFSKY--GKTLSVKVMTDPSGKSKGFGFVSFEKHEDA 244
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++++I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F A+ A++ + G +L V V F R E E E+ R
Sbjct: 143 VHFETREAAQQAISTMNGMLLNNRKVFV-----------SHFKSRQEREAELGVRAMEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
VY N+ + + +++ F + G ++ + D HS FV F E A
Sbjct: 192 NVYVKNLQMDIDEQGLEELF-SQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEA 244
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ ++ N+++ + + F
Sbjct: 72 MNFEVIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEESIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
+ G + +++ D S FV F E+A A++ +GM+L ++ + VS K+
Sbjct: 120 --STFGNILSCKVVCDDHGSRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKS 175
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|322709554|gb|EFZ01130.1| RNA recognition motif (RRM)-containing protein [Metarhizium
anisopliae ARSEF 23]
Length = 630
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NN +R N + G QR D RR+ YV ++ ++TE+ L L SS G+V+
Sbjct: 248 NNPKRHNEIVPSASKWDGGDALMQRYDKDRRSAYVGNLPSDMTEDALRALASSSGEVLGI 307
Query: 147 RVC-----GDPHSVLRFAFVEFADEHGA 169
++ G P FAFVEFA GA
Sbjct: 308 QIYKREIPGKPGQTNCFAFVEFARPDGA 335
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTR 244
VY N ++V +K+ F +V R
Sbjct: 192 NVYIKNFGEEVDDESLKELFSKTLSVKVMR 221
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F G+ ++++ D ++ FV F E A
Sbjct: 192 NVYIKNFGDDMDDERLKELFSKY--GKTLSVKVMTDSSGKSKGFGFVSFEKHEDA 244
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
RTV+V + I + L F+S G++ D R+ D + A+VEF + A+ AL
Sbjct: 104 RTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLALG 163
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPT-FLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L GT L P+++ S V+ T LPR + + +Y ++ + + +K
Sbjct: 164 LTGTRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQNRGPMK-LYIGSLHYNITEEMLKGI 222
Query: 234 FEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
FE G++ ++L+ D S FV + ++ A AL+ +G L +P++V
Sbjct: 223 FEPF--GKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMKV 276
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL 248
PS+T +P P D +RTV+ + ++ Q +++ FF + G++ +RL+
Sbjct: 84 PSRTERRQKSPELSPEERD-----ARTVFVWQLSARIRQRDLEDFFTSV--GKIRDVRLI 136
Query: 249 GDHV--HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS-----KTPVRPRVTRP 300
D+ S IA+VEF ESA LAL +G L PI++ S + P + RP
Sbjct: 137 MDNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSATPSLPRP 195
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F G+ ++++ D ++ FV F E A
Sbjct: 192 NVYIKNFGDDMDDGRLKELFSKY--GKTLSVKVMTDPSGKSKGFGFVSFEKHEDA 244
>gi|125524053|gb|EAY72167.1| hypothetical protein OsI_00016 [Oryza sativa Indica Group]
Length = 920
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG + + D +++ V +S++ +T + + LF CG+VVDC + H A+VE
Sbjct: 286 SGSTDKTDKGDVLKKMVQISNLSPLLTVDHIKQLFGYCGKVVDCTITDSKH----IAYVE 341
Query: 163 FADEHGARAALNLGGTMLGYYPVRV-----LPSKTAILPVN 198
++ + A AAL L +G P+ V LP KT + N
Sbjct: 342 YSKQEEATAALALNNMDVGGRPLNVEMAKSLPPKTNLANSN 382
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|322696791|gb|EFY88578.1| RNA-binding protein, putative [Metarhizium acridum CQMa 102]
Length = 665
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NN +R N + G QR D RR+ YV ++ ++TE+ L L SS G+V+
Sbjct: 282 NNPKRHNEIVPSASKWDGGDALMQRYDKDRRSAYVGNLPSDMTEDALRALASSSGEVLGI 341
Query: 147 RVC-----GDPHSVLRFAFVEFADEHGA 169
++ G P FAF+EFA GA
Sbjct: 342 QIYKREIPGKPGQTNCFAFIEFARPDGA 369
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL- 272
VY N ++V +K F G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKDLFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 273 NCSGMVLGSQPIRVSPSKTPV 293
+G +G + I V ++ V
Sbjct: 250 EMNGKEIGGKVIFVGRAQKKV 270
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV 264
+ER+M RTV+C + +++ ++++FF A G+V +RL+ D+ S IA+VEF
Sbjct: 38 EERDM--RTVFCMQLSQRIRARDLEEFFSAV--GKVRDVRLIMDNKTRRSKGIAYVEFQD 93
Query: 265 AESAILALNCSGMVLGSQPIRVSPSK 290
ES LA+ +G L PI V P++
Sbjct: 94 VESVPLAMGLNGQKLFGIPIVVQPTQ 119
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
E+ RTV+ + Q I L FS+ G+V D R+ D + A+VEF D
Sbjct: 38 EERDMRTVFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMDNKTRRSKGIAYVEFQDVESV 97
Query: 170 RAALNLGGTMLGYYPVRVLPSKT-------AILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A+ L G L P+ V P++ + + L R + +Y ++
Sbjct: 98 PLAMGLNGQKLFGIPIVVQPTQAERNRAAAQSASTSSSTLQRG----NIGPMRLYVGSLH 153
Query: 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILAL-NCSGMVL 279
+ + +K FE G++ ++ L+ D S F+ F +E A AL +G L
Sbjct: 154 FNITEDMLKGIFEPF--GKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFEL 211
Query: 280 GSQPIRVS--PSKTPVRPRVTR 299
+P++V +T V P+ R
Sbjct: 212 AGRPMKVGHVTERTDVVPKAPR 233
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +++ F
Sbjct: 192 NVYIKNFGEEVDDENLRELF 211
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
VY+ + + + +E L LFS G+ + +V D + F FV + A +A +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----TVYCTNIDKKVPQAEVKQ 232
G + + V ++ + + ++E SR +Y N+D + ++++
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ + S FV F+ E A A+ +G ++GS+P+ V+
Sbjct: 313 EFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC--GDPHSVLRFAFVEFADE 166
++ E TV+V + NI + LA F+SCG+VV R+ D F +VEFAD
Sbjct: 196 SEGEQEATNTVFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADV 255
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE---DEREMCSRTVYCTNIDK 223
A A+ G L VRV + P R++ D+R + T++ ++
Sbjct: 256 DSAIKAIEFEGKELDGRAVRVNFANAR----KPDADKRAKVFNDKRSPPADTLWIGSLPF 311
Query: 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-----IAFVEFAVAESAILALNCSGMV 278
+ + + F G+V +RL D + F + A A +A+ ALN G
Sbjct: 312 DTTEDHIYETFGEY--GDVQSVRLPTDRETGAAKGFGYVTFGDVAQATAALEALN--GSE 367
Query: 279 LGSQPIRV 286
GS+ IR+
Sbjct: 368 FGSRRIRI 375
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-- 157
K G A A++E+ +T++V + N+ +++LA F+ CG+VV RV D ++
Sbjct: 327 KLADGSAAPAEQEEE-SKTIFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRG 385
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE---DEREMCS 213
F VEFAD + A++ + G + PV V + L N R++ D S
Sbjct: 386 FGHVEFADASSVQKAIDTMNGKEIDGRPVNV--DRAPGLNKNQQRENRAKAFGDSTSAPS 443
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR---IAFVEFAVAESAIL 270
++ N+ + V + F GEV +RL D S R +VEF ++A
Sbjct: 444 SVLFVGNLSWDATEDAVWEAF--GEHGEVKSVRLPTDR-ESGRPKGFGYVEFVDVDAAKA 500
Query: 271 ALNC-SGMVLGSQPIRV 286
A SG +G + IR+
Sbjct: 501 AFEALSGTEIGGRSIRL 517
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + G +A
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 125 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 172
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 173 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVG 225
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ + ++ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 169
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 170 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVG 222
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F G+ ++++ D ++ FV F E A
Sbjct: 192 NVYIKNFGDDMDDGRLKELFSKY--GKTLSVKVMTDPSGKSKGFGFVSFEKHEDA 244
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 12 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 71
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVR--------VLPSKTAIL-----------PVNPT 200
V F + A RA + G +L V P+ L PV
Sbjct: 72 VHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIM 131
Query: 201 FLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFV 260
+ R R+ ++ N+DK + + F A G + +++ D S FV
Sbjct: 132 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDENGSKGYGFV 189
Query: 261 EFAVAESAILAL-NCSGMVLGSQPIRV 286
F E+A A+ +GM+L + + V
Sbjct: 190 HFETQEAAERAIEKMNGMLLNDRKVFV 216
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 16/164 (9%)
Query: 37 QKLVDMFTKLNP-LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95
++L D+F K P L+ + + F + ++ Q A+D N
Sbjct: 251 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH---EDAQKAVDEMNGKELNGKQI 307
Query: 96 NQGRKRLS-------GRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVV 144
GR + R F ++D + R +YV ++D I +ERL FS G +
Sbjct: 308 YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 367
Query: 145 DCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+V + F FV F+ E +A + G ++ P+ V
Sbjct: 368 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 411
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|289724641|gb|ADD18299.1| poly-U binding splicing factor [Glossina morsitans morsitans]
Length = 611
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRT--VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+++L+ + + QR+ ++ VYV I + E+ + F G + + DP +
Sbjct: 80 QQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQK 139
Query: 157 R--FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
FAFVE+ GA+ AL + G ++G ++V + + +P + ++E + +
Sbjct: 140 HKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEIQEEAKSFN 197
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL-GDHVHSTR-IAFVEFA---VAESA 268
R +Y +I + + ++K FEA G + +L G +H+ + F+E+A + A
Sbjct: 198 R-IYVASIHPDLSEEDIKSVFEAF--GPILYCKLAPGTSLHTHKGYGFIEYANKQAMDEA 254
Query: 269 ILALNCSGMVLGSQPIRVSPSKTP 292
I ++N LG Q +RV S TP
Sbjct: 255 IASMNL--FDLGGQLLRVGRSITP 276
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 24/179 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F A+ A+N + G +L V V F R E E E+ +R
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL 272
+Y N+ V + ++ F G++ ++++ D+ HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQF--GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ML P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
+ G + ++ D S FV F E+A A+N +GM+L + + V K+
Sbjct: 120 --STFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
>gi|83774819|dbj|BAE64942.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1037
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 15/219 (6%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
D N + A+ FN+ R Q R + S F + + T++V++ E +
Sbjct: 612 GDGNSEVAVIEFNS--RDEALVAQTRDQKSLDGFTIEVQIGTCSTLFVTNFPPEADENYI 669
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
GLF G+++D R ++ RF +V+F A +A L GT +G K
Sbjct: 670 RGLFREYGEIIDVRFPSLKYNTHRRFCYVQFKTAEAAHSATKLDGTTVG---------KG 720
Query: 193 AILPVNPTFLPRSEDEREMC--SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD 250
L + R +D R ++ +N+D K + +V++ F E+ RL D
Sbjct: 721 LTLTAKISDPSRKQDRHGPIYEGREIHVSNVDFKASERDVQELFSKYGTVELVRLPRKVD 780
Query: 251 HVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289
S +V F+ E A AL G S+ + V S
Sbjct: 781 G-GSKGFGYVVFSNKEEATAALAMDGQEYRSRTLHVKIS 818
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D+++TE L LFS G V RVC D + L +A+V + + G +A
Sbjct: 60 SLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 119
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 120 LNYTLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDAAIDNKALHDTF 167
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 168 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVG 220
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|326513006|dbj|BAK03410.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525779|dbj|BAJ88936.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 436
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 18/204 (8%)
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLR-- 157
RL+ + +R+D+ T++V D+ ++T+ L F V +V D ++
Sbjct: 165 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKG 224
Query: 158 FAFVEFADE-HGARAALNLGGTMLGYYPVRVLPS----KTAI---LPVNPTFLPRSEDER 209
+ FV+F D ARA + G P+R+ P+ T + +P+ T ++ +
Sbjct: 225 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 284
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269
+ + T++ +D V + +KQ F A GEV +++ R FV++A SA
Sbjct: 285 DPNNTTIFVGGLDPNVTEDALKQVF--APYGEVVHVKI----PVGKRCGFVQYANRPSAE 338
Query: 270 LALN-CSGMVLGSQPIRVSPSKTP 292
AL G ++G Q +R+S ++P
Sbjct: 339 QALQLLQGTLVGGQNVRLSWGRSP 362
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKVLYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 84 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 143
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E EM ++
Sbjct: 144 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGAKAKEFT 192
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N + +K+ F+ G+ ++++ D +R FV + E A
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKY--GKTLSVKVMTDPTGKSRGFGFVSYEKHEDA 245
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 73 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 120
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + +++ D S AFV F ++A A+ +GM+L + + V
Sbjct: 121 SAF--GNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVG 172
>gi|115448333|ref|NP_001047946.1| Os02g0719800 [Oryza sativa Japonica Group]
gi|75325622|sp|Q6ZI17.1|OML2_ORYSJ RecName: Full=Protein MEI2-like 2; Short=OML2; AltName:
Full=MEI2-like protein 2
gi|45735834|dbj|BAD12869.1| putative meiosis protein mei2 [Oryza sativa Japonica Group]
gi|88193635|dbj|BAE79764.1| MEI2-like RNA binding protein [Oryza sativa Japonica Group]
gi|113537477|dbj|BAF09860.1| Os02g0719800 [Oryza sativa Japonica Group]
gi|215767055|dbj|BAG99283.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 848
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT++V +I+ N+ + L LF G D R F + + D AR
Sbjct: 197 RTLFVRNINSNVDDTELRSLFEQYG---DIRTLYTATKHRGFVMISYFDIRAAR------ 247
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
G M G ++ P + L ++ + + ++++ T+ N+D V EV+Q F
Sbjct: 248 GAMRG---LQNKPLRRRKLDIHFSIPKENPSDKDLNQGTLVIFNLDPSVSNEEVRQIF-- 302
Query: 237 ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPR 296
GEV +R + H I F + AE+A+ +LN S + + I++ PS RP
Sbjct: 303 GTYGEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS--EIAGKRIKLEPS----RPG 356
Query: 297 VTR 299
TR
Sbjct: 357 GTR 359
>gi|119191127|ref|XP_001246170.1| hypothetical protein CIMG_05611 [Coccidioides immitis RS]
gi|392869018|gb|EAS30379.2| pre-mRNA splicing factor [Coccidioides immitis RS]
Length = 1296
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 19/218 (8%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
AD + SAI F++ + +K L GR Q E + T++V++ E +
Sbjct: 855 ADGDSASAIVEFDSKDDAEVAQTRDQKVLEGRVLSVQLE--TKATLFVTNFPPEADESYI 912
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVL---- 188
+FS G++V+ R + RF +V+FA A AL L +G V+
Sbjct: 913 RRIFSPHGEIVEVRFPSLKFNTHRRFCYVQFASAADAHDALELDHKSVGKNLNLVVKISD 972
Query: 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL 248
PSK RS E R ++ +N+D K + ++ + F A EV R+
Sbjct: 973 PSKRQA---------RSGAFEE--GREIHISNLDWKATEDDLIELFTAFGKVEVARIPTK 1021
Query: 249 GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
D S FV F+ E+A AL S+P+RV
Sbjct: 1022 ADG-GSKGFGFVAFSTPEAANAALAMDQKEFRSRPLRV 1058
>gi|440487895|gb|ELQ67659.1| RNA-binding protein rsd1 [Magnaporthe oryzae P131]
Length = 570
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 76/195 (38%), Gaps = 23/195 (11%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL 173
RRTV+V + + L F G V + ++ D + +VEF E AAL
Sbjct: 174 RRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTEESVAAAL 233
Query: 174 NLGGTMLGYYPVRVLPS--------KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L G L PV V P+ KT T +P +Y NI +
Sbjct: 234 QLTGQKLLGIPVIVQPTEAEKNRAVKTESTGTQQTSVP---------FHRLYVGNIHFSI 284
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ +++ FE GE+ ++L D +R FV+F A A AL +G L +P
Sbjct: 285 TEQDLQNVFEPF--GELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNGFDLAGRP 342
Query: 284 IRVSPSKTPVRPRVT 298
IRV P T
Sbjct: 343 IRVGLGNDKFTPEST 357
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEF 262
+EDER+ RTV+ + ++ E+K+FFE A G V +++ D V S + +VEF
Sbjct: 168 TEDERDR--RTVFVQQLAARLRTRELKEFFEKA--GPVAEAQIVKDRVSNRSKGVGYVEF 223
Query: 263 AVAESAILALNCSGMVLGSQPIRVSPSK 290
ES AL +G L P+ V P++
Sbjct: 224 KTEESVAAALQLTGQKLLGIPVIVQPTE 251
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|449454219|ref|XP_004144853.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
gi|449506986|ref|XP_004162902.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
Length = 562
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 198 NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHST 255
+ T P ++ ER+ RTV+ I K + +V +FF A G+V +RL+ D S
Sbjct: 164 DETAEPEADPERDQ--RTVFAYQISLKATERDVYEFFSRA--GKVRDVRLIMDRNSRRSK 219
Query: 256 RIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
+ +VEF A S +A+ SG +L SQP+ V PS+
Sbjct: 220 GVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSE 254
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+RTV+ I TE + FS G+V D R+ D +S +VEF D A+
Sbjct: 177 QRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAI 236
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM----CSRTVYCTNIDKKVPQAE 229
L G +L PV V PS+ V T +R +Y N+ + +
Sbjct: 237 ALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSGGARRLYVGNLHPNITEDN 296
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMV-LGSQPIRVS 287
++Q F A E+ ++ + + H F++F E A AL+ +G + + + I+VS
Sbjct: 297 LRQVFGAFGTVELVQM-PVDESGHCKGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVS 354
>gi|385305500|gb|EIF49466.1| pub1p [Dekkera bruxellensis AWRI1499]
Length = 489
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHS-VLRFAFVEFADEHGARAAL 173
+ T+YV +ID +++E+ L LF S G Q+ ++ D + +AF+E+ D A AL
Sbjct: 156 KTTLYVGNIDNSVSEDMLRDLFGSLGAQIQSIKILYDKNKRGFNYAFIEYEDHXKAENAL 215
Query: 174 N-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L GT+L YP+++ T+ R++ R + T++ ++ ++ +
Sbjct: 216 QALNGTVLANYPLKI------------TWAYRTQQSRSGENFTLFVGDLSPEIDDDSLAA 263
Query: 233 FFEAACGGEVTRLRLLGDHV--HSTRIAFVEF---AVAESAILALNCSGMVLGSQPIRV 286
F + ++ D S FV F AE+ + +N GM LG + IR+
Sbjct: 264 TFSKFP--SFVQANVMWDMKTGRSRGYGFVSFQNNQDAETVLQTMN--GMSLGGRSIRL 318
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEF---AV 264
RE+ T+Y NID V + ++ F + G ++ +++L D + AF+E+
Sbjct: 152 RELSKTTLYVGNIDNSVSEDMLRDLF-GSLGAQIQSIKILYDKNKRGFNYAFIEYEDHXK 210
Query: 265 AESAILALNCSGMVLGSQPIRVS 287
AE+A+ ALN G VL + P++++
Sbjct: 211 AENALQALN--GTVLANYPLKIT 231
>gi|47834693|gb|AAT39000.1| AML1 [Aegilops speltoides]
Length = 869
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT++V +I+ N+ + L LF G D R F + + D AR A+
Sbjct: 211 RTLFVRNINSNVEDSELRSLFEQFG---DIRTLYTATKHRGFVMISYFDIRAARGAMR-- 265
Query: 177 GTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L P+R L +I NP+ ++++ T+ N+D V EV+Q F
Sbjct: 266 --SLQNKPLRRRKLDIHFSIPKENPS-------DKDLNQGTLVIFNLDPSVSNEEVRQIF 316
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
GEV +R + H I F + AE+A+ +LN S + + I++ PS R
Sbjct: 317 --GTYGEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS--EIAGKRIKLEPS----R 368
Query: 295 PRVTR 299
P TR
Sbjct: 369 PGGTR 373
>gi|449487385|ref|XP_004157600.1| PREDICTED: LOW QUALITY PROTEIN: protein MEI2-like 4-like [Cucumis
sativus]
Length = 968
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDCRVCGDPHSVLRFAFVEFADEHGARAA 172
RT++V +I+ N+ + L LF G + C+ G F + + D AR A
Sbjct: 249 RTLFVRNINSNVEDSELEALFEQYGDIRTLYTACKHRG-------FVMISYYDIRAARNA 301
Query: 173 LNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
+ L P+R L +I NP+ E+++ T+ N++ V E+
Sbjct: 302 M----KALQNKPLRRRKLDIHYSIPKDNPS-------EKDINQGTLVVFNLESSVSNEEL 350
Query: 231 KQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
+Q F GE+ +R H I F + AE+A+ ALN S + G Q I++ PS+
Sbjct: 351 RQIF--GVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSD-IAGKQ-IKLEPSR 406
>gi|324497903|gb|ADY39600.1| putative TIA1 protein [Hottentotta judaicus]
Length = 196
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
T+YV ++D ++TEE + LF+ G V+ C++ +P + + FVEF D A AAL
Sbjct: 1 TLYVGNLDPSVTEELILALFTQIGPVIGCKIIHEPGND-PYCFVEFTDHQAAAAALLAMN 59
Query: 178 --TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
LG + + A P N P+ + + Y + P+ E +Q E
Sbjct: 60 KRQCLG----KEMKVNWATSPGN---TPKQDTSKH------YHIFVGDLSPEIETQQLKE 106
Query: 236 A-ACGGEVTRLRLLGD--HVHSTRIAFVEFAV---AESAILALNCSGMVLGSQPIRV 286
A A GE++ R++ D + S FV F AE+AI +N G LGS+ IR
Sbjct: 107 AFAPFGEISDCRVVRDPQTLKSKGYGFVSFVKKTDAENAIATMN--GQWLGSRAIRT 161
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEH 167
+++ S ++V D+ I ++L F+ G++ DCRV DP ++ + FV F +
Sbjct: 81 KQDTSKHYHIFVGDLSPEIETQQLKEAFAPFGEISDCRVVRDPQTLKSKGYGFVSFVKKT 140
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A A+ + G LG +R
Sbjct: 141 DAENAIATMNGQWLGSRAIRT 161
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ + ++ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 169 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVG 221
>gi|413953603|gb|AFW86252.1| hypothetical protein ZEAMMB73_610467 [Zea mays]
Length = 847
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT++V +I+ N+ + L LF G D R F + + D AR A+
Sbjct: 198 RTLFVRNINSNVEDSELRSLFEQYG---DIRTLYTATKHRGFVMISYFDIRAARNAMR-- 252
Query: 177 GTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L P+R L +I NP+ ++++ T+ N+D V EV+Q F
Sbjct: 253 --ALQNKPLRRRKLDIHFSIPKENPS-------DKDLNQGTLVIFNLDPSVSNEEVRQIF 303
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVR 294
A GEV +R + H I F + AE+A+ +LN S + + I++ PS R
Sbjct: 304 GAY--GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS--EIAGKRIKLEPS----R 355
Query: 295 PRVTR 299
P TR
Sbjct: 356 PGGTR 360
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GRA R +QR+ ++R+T +++ ++D+ I + L F++ G V+ C+V D H
Sbjct: 114 IKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHG 173
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV + A A+ ML L K + + + R EM +
Sbjct: 174 RSKGYGFVHYETAEAADTAIKAVNGML-------LNDKKVYVGPHISRKERQSKIEEMKA 226
Query: 214 R--TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESA 268
+ VY NID +V E +Q FE G VT + D S FV F E A
Sbjct: 227 QFTNVYVKNIDAEVTDEEFRQLFEQF--GNVTSAVIQRDEEGRSKGFGFVNFEKHEEA 282
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALNL 175
+YV ++D +TE L +F+ G V RVC D + L +A+V + + G RA L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+++ R++ S+ R R+ ++ N+D+ + + F
Sbjct: 110 NYSLIKGRACRIMWSQ------------RDPALRKTGQGNIFIKNLDEGIDNKALHDTF- 156
Query: 236 AACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSP 288
A G V ++ D H S FV + AE+A A+ +GM+L + + V P
Sbjct: 157 -AAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGP 210
>gi|195375406|ref|XP_002046492.1| GJ12466 [Drosophila virilis]
gi|194153650|gb|EDW68834.1| GJ12466 [Drosophila virilis]
Length = 645
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
VYV I + E+ + F+ G + + DP + FAFVE+ GA+ AL +
Sbjct: 145 VYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 204
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
G ++G ++V + + +P + ++E + +R +Y +I + + ++K FE
Sbjct: 205 NGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLSEDDIKSVFE 261
Query: 236 AACGGEVTRLRLL-GDHVHSTR-IAFVEFA---VAESAILALNCSGMVLGSQPIRVSPSK 290
A G + +L G VH+ + F+E+A + AI ++N LG Q +RV S
Sbjct: 262 AF--GPILYCKLAQGTSVHTHKGYGFIEYANKQAMDEAIASMNL--FDLGGQLLRVGRSI 317
Query: 291 TP 292
TP
Sbjct: 318 TP 319
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHG 168
+EDS + + V+ + Q +T+E + LFSS G V C++ D + L + FV +
Sbjct: 22 QEDS-KTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPED 80
Query: 169 ARAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK 224
A A+N G L ++V PS AI N +Y + + K
Sbjct: 81 AEKAINTFNGLRLQNKTIKVSFARPSSDAIKGAN-----------------LYVSGLSKS 123
Query: 225 VPQAEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVL 279
+ Q +++ F A G++ R+L D++ S + F+ F + AE AI LN +
Sbjct: 124 MTQQDLENLFNAY--GQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNGTTPKG 181
Query: 280 GSQPIRVSPSKTP 292
S+PI V + P
Sbjct: 182 ASEPITVKFANNP 194
>gi|303315541|ref|XP_003067778.1| RNA recognition motif containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240107448|gb|EER25633.1| RNA recognition motif containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|320035369|gb|EFW17310.1| hypothetical protein CPSG_05753 [Coccidioides posadasii str.
Silveira]
Length = 1296
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 19/218 (8%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
AD + SAI F++ + +K L GR Q E + T++V++ E +
Sbjct: 855 ADGDSASAIVEFDSKDDAEVAQTRDQKVLEGRVLSVQLE--TKATLFVTNFPPEADESYI 912
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVL---- 188
+FS G++V+ R + RF +V+FA A AL L +G V+
Sbjct: 913 RRIFSPHGEIVEVRFPSLKFNTHRRFCYVQFASAADAHDALELDHKSVGENLNLVVKISD 972
Query: 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLL 248
PSK RS E R ++ +N+D K + ++ + F A EV R+
Sbjct: 973 PSKRQA---------RSGAFEE--GREIHISNLDWKATEDDLIELFTAFGKVEVARIPTK 1021
Query: 249 GDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
D S FV F+ E+A AL S+P+RV
Sbjct: 1022 ADG-GSKGFGFVAFSTPEAANAALAMDQKEFRSRPLRV 1058
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + + G +A
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEE 119
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 120 LNYTIIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 167
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 168 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVG 220
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 14/178 (7%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRV--CGDPHSVLRFAFVEFADEHGARAALN 174
RTV+ + Q + L FSS G+V D R+ C A++EF D AL
Sbjct: 267 RTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALALG 326
Query: 175 LGGTMLGYYPVRVLPS---KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L G L P+ V + K + P F P+S + +Y ++ + + ++
Sbjct: 327 LSGQRLLGVPIMVQHTQAEKNRLQNATPAFQPKS----HVGPMRLYVGSLHFDITEEMLR 382
Query: 232 QFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
FE G++ ++L+ D S F+ + AE A AL +G L +P++V
Sbjct: 383 GIFEPF--GKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFELAGRPMKV 438
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-- 256
PT L S +ER+ +RTV+C + ++V ++++FF + G+V +RL+ + T+
Sbjct: 256 PTEL--SPEERD--ARTVFCIQLSQRVRARDLEEFFSSV--GKVRDVRLI--TCNKTKRF 307
Query: 257 --IAFVEFAVAESAILALNCSGMVLGSQPIRV 286
IA++EF ES LAL SG L PI V
Sbjct: 308 KGIAYIEFEDPESVALALGLSGQRLLGVPIMV 339
>gi|161078704|ref|NP_001097953.1| CG34354, isoform A [Drosophila melanogaster]
gi|158030423|gb|ABW08789.1| CG34354, isoform A [Drosophila melanogaster]
Length = 525
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 20/186 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
G LG + R P+ A + P ++ + TVYC I+ +
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 217
Query: 230 VKQFFEAACG--GEVTRLRLLGDHVHSTRIAFVEFAVAES---AILALNCSGMVLGSQPI 284
++ + G + +R+ D + AFV F+ E+ AI+A+N + + QP+
Sbjct: 218 NEEILQKTFSPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAIVAVNNT--EINQQPV 271
Query: 285 RVSPSK 290
+ + K
Sbjct: 272 KCAWGK 277
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ + ++ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 169 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVG 221
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F A+ A+N + G +L V V F R E E E+ +R
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESA 268
+Y N+ V + ++ F G++ ++++ D+ HS FV F E A
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQF--GKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ML P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
+ G + ++ D S FV F E+A A+N +GM+L + + V K+
Sbjct: 120 --STFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|195135155|ref|XP_002012000.1| GI16722 [Drosophila mojavensis]
gi|193918264|gb|EDW17131.1| GI16722 [Drosophila mojavensis]
Length = 616
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
VYV I + E+ + F+ G + + DP + FAFVE+ GA+ AL +
Sbjct: 111 VYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 170
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
G ++G ++V + + +P + ++E + +R +Y +I + + ++K FE
Sbjct: 171 NGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLSEDDIKSVFE 227
Query: 236 AACGGEVTRLRLL-GDHVHSTR-IAFVEFA---VAESAILALNCSGMVLGSQPIRVSPSK 290
A G + +L G VH+ + F+E+A + AI ++N LG Q +RV S
Sbjct: 228 AF--GPILYCKLAQGTSVHTHKGYGFIEYANKQAMDEAIASMNL--FDLGGQLLRVGRSI 283
Query: 291 TP 292
TP
Sbjct: 284 TP 285
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPTGKSKGFGFVSYEKHEDA 244
>gi|406606068|emb|CCH42541.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 787
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGA 169
E++ T+YV D+DQ +TE+ L+ LF+ + ++C P + L + +V F+ + A
Sbjct: 130 ENNTTVTLYVGDLDQKVTEKSLSSLFTKYESFLSAKLCYSPTTRLSLGYGYVNFSSDTDA 189
Query: 170 -RAALNLGGTMLGYYPVRVLP 189
RA +L T++ +R++P
Sbjct: 190 NRATEDLNYTLVANKEIRIMP 210
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,733,992,084
Number of Sequences: 23463169
Number of extensions: 193659752
Number of successful extensions: 1077908
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 4498
Number of HSP's that attempted gapping in prelim test: 1011858
Number of HSP's gapped (non-prelim): 52114
length of query: 303
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 162
effective length of database: 9,050,888,538
effective search space: 1466243943156
effective search space used: 1466243943156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)