BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022058
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 26/197 (13%)
Query: 111 REDSVRRTVYVSDIDQNIT----EERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFA 164
R+DS T++V D+ ++T +E ++SS +VV R+ G + FV+FA
Sbjct: 170 RDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKG---YGFVKFA 226
Query: 165 DE-HGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFL-PR-SEDEREMCSRTVYC 218
DE RA + G + P+R+ P+ K P T+ P+ ++ E + + T++
Sbjct: 227 DESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFV 286
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEF---AVAESAILALNCS 275
+D V + ++Q F GE+ +++ V R FV+F A AE A+ +LN
Sbjct: 287 GGLDPTVAEEHLRQVFSPY--GELVHVKI----VAGKRCGFVQFGTRASAEQALSSLN-- 338
Query: 276 GMVLGSQPIRVSPSKTP 292
G LG Q IR+S ++P
Sbjct: 339 GTQLGGQSIRLSWGRSP 355
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL------PVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
L + + LG P L A L P+ P DE RTVY N++ +
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDE---IRRTVYVGNLNSQTT 78
Query: 227 QA-EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285
A ++ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P++
Sbjct: 79 TADQLLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136
Query: 286 V 286
+
Sbjct: 137 I 137
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + + RTVY N++ + A +
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA-E 229
AAL+ T LG P L + V+P+ + DE RTVY N++ + A +
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRV 286
+ +FF+ GEV +R+ GD TR AFVEFA S AL +G++ G +P+++
Sbjct: 86 LLEFFKQV--GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAI 269
VY N + ++K+FFE G++T +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPY--GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240
Query: 270 LALNCSGMVLG 280
ALN M G
Sbjct: 241 QALNGKDMGEG 251
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
A G + ++ D +++ FV F E+A +++ +GM+L + + V
Sbjct: 111 SAF--GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
VYV + ++ +E+L F G++ +V + F FV F A AA+ L
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 177 GTMLG----YYPVRVLPSKTAILPVNPTFLPRSEDERE-MCSRTVYCTNIDKKVPQAEVK 231
G +G Y R + F + E + +Y N+D + ++
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 232 QFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287
F G +T +++ D S FV F A A A+ +G V+GS+P+ V+
Sbjct: 305 IAFSPY--GNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVA 360
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D ++ FV + AE+A A+ + +GM+L + + V
Sbjct: 151 --AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 203
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
NID +V E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 227 IKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-AD 165
AQ+ ++YV ++D ++TE L LFSS GQV RVC D + L +A+V + +
Sbjct: 40 AQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
E G +A L T++ P R++ S+ +P R+ V+ N+D +
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDHAI 147
Query: 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQP 283
+ F A G + ++ D + +++ FV + AE+A A+ + +GM+L +
Sbjct: 148 DNKALHDTF--AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKK 205
Query: 284 IRVSPSKTPVRPRVTR 299
+ V P + R+++
Sbjct: 206 VFVG-HHIPKKERMSK 220
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
+YV +ID ++T+E LF G + + D R F FV + A A++
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVD 287
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D + L +A+V F + E G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+M + V+ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G++ ++ D + + + FV F ESA A+ + +GM+L + + V
Sbjct: 189 SAF--GKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFAD-DNKQSAI 82
N+ K ++E T Q+ D+F + + S D N+A+ + Q A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSL---SLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 83 DNFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRR----------------TVYVSDID 125
D N+ + G+K GRA + +RE+ +R+ +++ ++
Sbjct: 319 DELNDKEYK------GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQ 372
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYY 183
+ +ERL FS+ G + ++ D + F FV + E +A + ML
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432
Query: 184 PVRV 187
P+ V
Sbjct: 433 PLYV 436
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ +++E L +FS G V RVC D + L +A+V F D R A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ + +P+ R+ S ++ N+ P + K ++
Sbjct: 98 ---QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSGNIFIKNLH---PDIDNKALYD 144
Query: 236 A-ACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288
+ G++ ++ D ++ + F E A+ AI ALN GM+L Q I V+P
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN--GMLLNGQEIYVAP 200
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV ++D ++TE L +F+ G V RVC D + L +A+V F ++ AL
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE- 105
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P++ P + +P R+ + +Y N+D + + F
Sbjct: 106 ---ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAIDNKALHDTFS 155
Query: 236 AACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
A G++ ++ D ++R FV + AESA A+ + +GM+L + + V P
Sbjct: 156 AF--GQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGP 208
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 139
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 140 ELEQLFSQY--GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 198 ITVKFANNP 206
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 30 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 89
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y +++ K + Q E
Sbjct: 90 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSSLPKTMNQKE 135
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + S+PI
Sbjct: 136 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPI 193
Query: 285 RVSPSKTP 292
V + P
Sbjct: 194 TVKFANNP 201
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y +++ K + Q E
Sbjct: 91 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSSLPKTMNQKE 136
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH---STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
++Q F G + R+L D V S + F+ F AE AI LN + S+P
Sbjct: 137 MEQLFSQY--GRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEP 194
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 195 ITVKFANNP 203
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQP 283
E++Q F G + R+L D V S + F+ F AE AI LN ++P
Sbjct: 168 ELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 284 IRVSPSKTP 292
I V + P
Sbjct: 226 ITVKFANNP 234
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHG 168
+ ++V ++YV D+D +++E L +FS G V RVC D + L +A+V F D
Sbjct: 29 QSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDA 88
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+ A+ L + P++ + +P+ R+ + ++ N+ P
Sbjct: 89 AKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLH---PDI 134
Query: 229 EVKQFFEA-ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNC-SGMVLGSQPIR 285
+ K ++ + G + ++ D ++ +V F ESA A++ +GM+L Q I
Sbjct: 135 DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIY 194
Query: 286 VSP 288
V P
Sbjct: 195 VGP 197
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 164 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG 216
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A+ A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAV---AESAILAL 272
NID+ + E + FE GE+T L D S FV F A +A+ AL
Sbjct: 240 VKNIDQDTTEEEFRDLFEKF--GEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 273 N 273
N
Sbjct: 298 N 298
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
N+ K + + T ++ D+F K + F +N + DN +A++
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFT-SHDNAAAAVE 295
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRR----------------TVYVSDIDQ 126
N+ +F +G+K GRA + +RE+ +R+ +Y+ ++
Sbjct: 296 ALNDK-----DF-KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 349
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
+I +E+L LFSS G + +V D
Sbjct: 350 DIDDEKLRELFSSYGTITSAKVMRD 374
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQ 166
Query: 228 AEVKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQ 282
E++Q F G + R+L D V S + F+ F AE AI LN ++
Sbjct: 167 KELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 224
Query: 283 PIRVSPSKTP 292
PI V + P
Sbjct: 225 PITVKFANNP 234
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 160 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 212
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE--DEREMCSRTVY 217
FV + A A+ ML L K + + + R DE + +Y
Sbjct: 183 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID V + E ++ FE GE+T L D +R FV ++ ESA A++
Sbjct: 236 IKNIDPDVTEEEFRKIFEQF--GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 163 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 215
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 126 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 185
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 186 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
N+D ++ E ++ FE GE+T L D +R FV F+ ESA A+
Sbjct: 239 IKNLDSEIDDDEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 158 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 181 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID+ V + E ++ FE GE+T L D +R FV F+ ESA A++
Sbjct: 234 IKNIDQDVTEEEFRELFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 107 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 152
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 153 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 285 RVSPSKTP 292
V + P
Sbjct: 211 TVKFANNP 218
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 161 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID++V E ++ FE GE+T L D +R FV F+ +SA A++
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
N+ K + E T ++ MF K + S + F +N + D+ Q+A+D
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATL-SRDQEGKSRGFGFVNFS-THDSAQAAVD 291
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ + G+K GRA + +RE+ +R+ +YV ++
Sbjct: 292 EMNDKEIK------GQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
++ +E+L LFS G + +V D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRD 370
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 141 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTML 180
+ QN+T+E L LF S G++ C++ D + L + FV + D A A+N L G L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 181 GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG 240
++V ++ P S R+ +Y + + K + Q E++Q F G
Sbjct: 106 QTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKELEQLFSQY--G 149
Query: 241 EVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPIRVSPSKTP 292
+ R+L D V S + F+ F AE AI LN ++PI V + P
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 206
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFA 159
A R +E ++VYV ++D ++T E L F+SCG V + C + G P FA
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FA 99
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
++EF++ AL L G+ML P++V P +T +
Sbjct: 100 YIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAV 264
D+ + +++VY N+D V E++ F A+CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHF-ASCGS-VNRVTILCDKFTGHPKGFAYIEFSE 105
Query: 265 AESAILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPGM 302
AL +G +L +P++V+P +T V PGM
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV------PGM 137
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D + L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 161 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
NID++V E ++ FE GE+T L D +R FV F+ +SA A++
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
N+ K + E T ++ MF K + S + F +N + D+ Q+A+D
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATL-SRDQEGKSRGFGFVNFS-THDSAQAAVD 291
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ + G+K GRA + +RE+ +R+ +YV ++
Sbjct: 292 EMNDKEIK------GQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
++ +E+L LFS G + +V D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRD 370
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQKE 147
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN ++PI
Sbjct: 148 LEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 285 RVSPSKTP 292
V + P
Sbjct: 206 TVKFANNP 213
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 235 EAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D +++ FV + AE+A A+ + +GM+L + + V
Sbjct: 157 --AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 209
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 180 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
N+D+++ + E +Q FE GE+T L D +R FV ++ +SA A++
Sbjct: 233 IKNLDQEISEEEFRQMFEKF--GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
NL+ + SE EF MF K + S + F +N + D+ Q+A+D
Sbjct: 235 NLDQEISEEEFR-----QMFEKFGEITSATL-SRDQEGKSRGFGFVNYS-THDSAQAAVD 287
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ + G+K GRA + +RE+ +R+ +YV ++
Sbjct: 288 EMNDKEVK------GQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 341
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
+I +E+L +F+ G + +V D
Sbjct: 342 DIDDEKLREMFAPYGTITSAKVMRD 366
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D V S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P+R P + + +P+ R V+ N+D + + + F +
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFSS 168
Query: 237 ACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
G + ++ D V ++ FV+F E+A A++ +GM+L + + V
Sbjct: 169 F--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 130 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 189
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 190 FVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVPSF 238
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL 272
VY N+ K++ E+K+ F G+++ ++ D ++R FV F E+A +A+
Sbjct: 239 TNVYVKNLPKEITDDELKKTF--GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 273 -NCSGMVLGSQPIRV 286
+G+ LG + V
Sbjct: 297 EKMNGISLGEDVLYV 311
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+Y+ ++D ++ +E+L +FS G V C+V + + R F FV +++ A A+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 404 GKMIGRKPLYV 414
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A A++ + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA 268
R VY N + +K+ F G ++ + D+ S FV F E A
Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244
Query: 269 ILALN 273
A++
Sbjct: 245 QKAVD 249
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N + GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL F G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A++ + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273
VY N + + +K++F G ++ + DH S FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286
A G + +++ D S FV F E+A A++ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 51 KEFFPSY-----YHQHTDHHFSVINNNFAD----DNKQSAIDNFNNNRRRRNNFNQGRKR 101
KE+F Y TD H F ++ Q A+D+ N GR +
Sbjct: 208 KEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQ 267
Query: 102 LS-------GRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
R F ++D + R +YV ++D I +ERL F+ G + +V
Sbjct: 268 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM 327
Query: 151 DPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ F FV F+ E +A + G ++ P+ V
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
+ ++YV D+ ++E+ L +F+ G V + RVC D ++ L +A+V + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L P+R + +P+ R+ V+ N+DK + +
Sbjct: 68 LD----TLNNTPIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGIDHKALYD 116
Query: 233 FFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILAL-NCSGMVLGSQPIRVSPSK 290
F A G + +++ D +S++ FV + ESA A+ +GM++ Q + V P K
Sbjct: 117 TFSAF--GNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFK 174
Query: 291 T 291
+
Sbjct: 175 S 175
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 98 GRKRLSGRAFRA-QREDSVRRT---------VYVSDIDQNITEERLAGLFSSCGQVVDCR 147
G+ +GRA + +RE ++ T +Y+ +ID +I ++L +FS G +
Sbjct: 255 GKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAI 314
Query: 148 VCGDPHSVLR--FAFVEF-ADEHGARAALNLGGTMLGYYPVRV 187
V D + F FV + A + RA + G M+G P+ V
Sbjct: 315 VMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q + + T+++ ++ N+ ++++ F G+V+ R+ R F V+FA
Sbjct: 304 QSQGTESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEE 363
Query: 169 ARAALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
A+ AL L G L PVR + + A P + + + S++++ D +
Sbjct: 364 AKKALELHGCDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLE 423
Query: 227 QAEVKQFFE---AACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALNCSGMVLG 280
++++++ E A C GE+TR+ + D S IA+++F S AL SG LG
Sbjct: 424 ESKIRESLEGHFADC-GEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLG 481
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
L P + P+ T P P S + S T++ N+ + Q +VK+FF+
Sbjct: 278 LAKTPKKKTPAATKSQNDEPK-TPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEV-- 334
Query: 240 GEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALNCSGMVLGSQPIRV 286
GEV +RL S+R V+FA +E A AL G L +P+R+
Sbjct: 335 GEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPVRL 382
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L F G VV RVC D L + +V F + + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R + ++ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 235 EAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVSP 288
+ G + ++ D S FV++A ESA A+ +GM+L + + V P
Sbjct: 145 SSF--GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 257 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+YV ++D +I++E+L +FS G V +V DP+ + + FV FA E A
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Query: 173 LNLGGTMLGYYPVRV 187
L G M+ P+ V
Sbjct: 376 SQLSGKMIESKPLYV 390
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 51.6 bits (122), Expect = 7e-06, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
V +YV++ E + LFS+ G VVD R ++ RF +V+ A AL
Sbjct: 664 VDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL 723
Query: 174 NLGGTMLG-YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L +L YP++V S P+ T PRS E R +Y TNID KV + +V+
Sbjct: 724 QLHKKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVET 775
Query: 233 FFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
FF G+V +R+ +V + A AL+ +G LG++ + V SK
Sbjct: 776 FFRDY--GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
Score = 40.0 bits (92), Expect = 0.021, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
R +YV++ID + E+ + F GQV R+ + F +V A AL+
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 177 GTMLGYYPVRVLPSK-------TAILPVNPTFLPRSEDERE-------------MCSRTV 216
G LG + V+ SK T + + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272
TN+D V +A ++ FE+ G++ R+ L +H + F++ A A LAL
Sbjct: 877 GVTNVDGTVNEARLRSLFESY--GKLYRVVLHPEH-EGAVVEFLDIHDAGKASLAL 929
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGG 177
+++ ++D+ L LF G VV+C V V + FV E R A+ NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
L + ++V +K+ P PT ++ N+ K EV++ F+
Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT-------------TKIFVGNLTDKTRAPEVRELFQKY 109
Query: 238 CGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRP 295
G V ++ ++ VH + V+ A+ E LN G V+ QP++V S + VRP
Sbjct: 110 --GTVVECDIVRNYGFVHLDCVGDVQDAIKE-----LN--GRVVDGQPLKVQVSTSRVRP 160
Query: 296 RVTRPGM 302
+PGM
Sbjct: 161 ---KPGM 164
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 171 AALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
A+N L G L ++V ++ P S R+ +Y + + K + Q E
Sbjct: 95 KAINTLNGLKLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMSQKE 140
Query: 230 VKQFFEAACGGEVTRLRLLGDHVH--STRIAFVEF---AVAESAILALNCSGMVLGSQPI 284
++Q F G + R+L D S + F+ F AE AI LN + ++PI
Sbjct: 141 MEQLFSQY--GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 285 RVSPSKTP 292
V + P
Sbjct: 199 TVKFANNP 206
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRV 286
A G + +++ D S AFV F E+A A+ +GM+L + + V
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESA 268
VY N ++V +K+ F G+ ++++ D + S FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYV 365
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D NITE L +FS G + RVC D + L +A+V + D E G +A
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + P R++ S+ R R+ S ++ N+ + + + F
Sbjct: 111 LNYAEINGRPCRIMWSE------------RDPAIRKKGSGNIFIKNLHPAIDNKALHETF 158
Query: 235 EAACGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290
+ GEV ++ D ++R + F E + A+ AI A+N GM++ + V+
Sbjct: 159 --STFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN--GMLMNGLEVYVA-MH 213
Query: 291 TPVRPRVTR 299
P + R+++
Sbjct: 214 VPKKDRISK 222
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 114/294 (38%), Gaps = 62/294 (21%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLA----------KEFFPSYYHQHTDHHFSVI 69
N N +L + + T L D+F+ L P++ K Y +TD+
Sbjct: 47 NNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAG-- 104
Query: 70 NNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR---AQREDSVRR----TVYVS 122
+ AI N ++GR R ++R+ ++R+ +++
Sbjct: 105 ---------KKAIQELN------------YAEINGRPCRIMWSERDPAIRKKGSGNIFIK 143
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTML 180
++ I + L FS+ G+V+ C+V D + R F FV F +E A+ A+ + G ++
Sbjct: 144 NLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLM 203
Query: 181 GYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
V V +P K I + +E + +Y NID + E +Q F
Sbjct: 204 NGLEVYVAMHVPKKDRISKL---------EEAKANFTNIYVKNIDVETTDEEFEQLFSQY 254
Query: 238 CGGEVTRLRLLGDHVHSTR----IAFVEFAVAESAILALNCSGMVLGSQPIRVS 287
GE+ L D + + FV+ A A+ LN G SQ + V
Sbjct: 255 --GEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN--GKEFKSQALYVG 304
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT++V +I+ N+ + L LF G D R F + + D AR
Sbjct: 197 RTLFVRNINSNVDDTELRSLFEQYG---DIRTLYTATKHRGFVMISYFDIRAAR------ 247
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
G M G ++ P + L ++ + + ++++ T+ N+D V EV+Q F
Sbjct: 248 GAMRG---LQNKPLRRRKLDIHFSIPKENPSDKDLNQGTLVIFNLDPSVSNEEVRQIF-- 302
Query: 237 ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPR 296
GEV +R + H I F + AE+A+ +LN S + + I++ PS RP
Sbjct: 303 GTYGEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS--EIAGKRIKLEPS----RPG 356
Query: 297 VTR 299
TR
Sbjct: 357 GTR 359
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFS G V RVC D + L +A+V + G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ + ++ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 235 EAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILAL-NCSGMVLGSQPIRVS 287
A G + ++ D H +S FV + E+A A+ + +GM+L + + V
Sbjct: 169 --AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVG 221
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VYV +I+ +T+E LF+ G+V + D R F FV F A A++
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVD 299
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q + + +T++V ++ N+ +E++ F G+VVD R R F VEFA
Sbjct: 442 QNQATGSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEA 501
Query: 169 ARAALNLGGTMLGYYPVR--VLPSKTAILPV----NPTFLPRSEDEREMCSRTVYCTNID 222
A+ AL L G L PVR + + A P N +F + + T++ D
Sbjct: 502 AKKALELAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD 557
Query: 223 KKVPQAEVKQFFEAACG--GEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALNCSGMV 278
+ +++ E G GE+TR+ + D+ S +A+++FA S A +G
Sbjct: 558 TSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSD 617
Query: 279 LG 280
LG
Sbjct: 618 LG 619
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVE 261
P S + S+T++ N+ V Q +VKQFF+ A GEV +R + R VE
Sbjct: 438 PASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQEA--GEVVDIRFSTFEDGNFRGFGHVE 495
Query: 262 FAVAESAILALNCSGMVLGSQPIRV 286
FA AE+A AL +G L +P+R+
Sbjct: 496 FATAEAAKKALELAGHDLMGRPVRL 520
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVL 279
A G + +++ D S FV F E+A A+ +GM+L
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLF--GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVL 279
A G + +++ D S FV F E+A A+ +GM+L
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLF--GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVL 279
A G + +++ D S FV F E+A A+ +GM+L
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + + +K+ F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELF--GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL-NCSGMVL 279
A G + +++ D S FV F E+A A+ +GM+L
Sbjct: 120 SAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTR-IAFVEFAVAESAILALN 273
VY N + + +K+ F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELF--GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F A+ A+N + G +L V V F R E E E+ +R
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESA 268
+Y N+ V + ++ F G++ ++++ D+ HS FV F E A
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQF--GKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ML P+R++ S+ R R+ ++ N++ + + F
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC-SGMVLGSQPIRVSPSKT 291
+ G + ++ D S FV F E+A A+N +GM+L + + V K+
Sbjct: 120 --STFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,435,865
Number of Sequences: 539616
Number of extensions: 4791284
Number of successful extensions: 76111
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 546
Number of HSP's that attempted gapping in prelim test: 38488
Number of HSP's gapped (non-prelim): 22067
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)