Query 022058
Match_columns 303
No_of_seqs 256 out of 2585
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-44 4.6E-49 332.7 25.9 252 23-292 4-349 (352)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-39 2.7E-44 318.3 24.7 256 21-292 87-364 (562)
3 TIGR01628 PABP-1234 polyadenyl 100.0 8.7E-40 1.9E-44 319.3 23.6 245 24-293 2-262 (562)
4 KOG0145 RNA-binding protein EL 100.0 1E-39 2.2E-44 273.7 17.4 250 24-291 43-357 (360)
5 KOG0117 Heterogeneous nuclear 100.0 2.5E-39 5.3E-44 289.3 18.4 246 23-301 84-340 (506)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 5.5E-38 1.2E-42 300.1 24.4 242 23-295 59-310 (578)
7 KOG0148 Apoptosis-promoting RN 100.0 5.6E-37 1.2E-41 258.6 18.7 228 24-295 8-241 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.6E-36 5.5E-41 288.9 25.1 249 24-292 98-480 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.6E-36 5.6E-41 288.9 24.2 246 23-292 3-351 (481)
10 TIGR01622 SF-CC1 splicing fact 100.0 7.4E-35 1.6E-39 278.1 25.4 252 22-292 89-448 (457)
11 KOG0144 RNA-binding protein CU 100.0 2.5E-36 5.5E-41 268.9 13.6 254 24-293 36-505 (510)
12 KOG0127 Nucleolar protein fibr 100.0 5.7E-35 1.2E-39 266.7 21.9 253 23-291 6-377 (678)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-33 2.2E-38 273.7 25.0 252 20-291 173-501 (509)
14 TIGR01645 half-pint poly-U bin 100.0 7.8E-33 1.7E-37 265.2 25.4 158 20-191 105-282 (612)
15 TIGR01659 sex-lethal sex-letha 100.0 3.3E-32 7.2E-37 248.3 21.9 169 112-296 103-279 (346)
16 KOG0123 Polyadenylate-binding 100.0 6.8E-32 1.5E-36 247.6 18.5 238 24-291 3-245 (369)
17 TIGR01645 half-pint poly-U bin 100.0 2.9E-31 6.3E-36 254.4 21.3 177 115-296 106-288 (612)
18 KOG0123 Polyadenylate-binding 100.0 2.4E-31 5.1E-36 244.0 13.3 253 25-293 79-350 (369)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-29 2.7E-34 234.2 21.4 163 115-293 2-172 (352)
20 TIGR01622 SF-CC1 splicing fact 100.0 4.5E-29 9.8E-34 238.2 22.3 173 115-291 88-265 (457)
21 KOG0110 RNA-binding protein (R 100.0 3.5E-29 7.5E-34 235.5 16.6 244 24-291 387-692 (725)
22 KOG0144 RNA-binding protein CU 100.0 1.4E-28 3E-33 219.5 12.8 166 114-294 32-208 (510)
23 TIGR01659 sex-lethal sex-letha 100.0 7.2E-28 1.6E-32 219.9 14.8 158 20-193 105-275 (346)
24 TIGR01648 hnRNP-R-Q heterogene 99.9 3.1E-26 6.6E-31 219.5 20.0 186 87-293 21-223 (578)
25 KOG0145 RNA-binding protein EL 99.9 8.5E-27 1.8E-31 196.0 13.9 166 113-294 38-211 (360)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.2E-26 1.6E-30 218.9 22.4 172 115-292 174-375 (509)
27 KOG0131 Splicing factor 3b, su 99.9 7.9E-27 1.7E-31 186.8 12.7 165 115-294 8-179 (203)
28 KOG0117 Heterogeneous nuclear 99.9 2.7E-25 5.9E-30 199.4 19.2 167 108-295 75-251 (506)
29 KOG0148 Apoptosis-promoting RN 99.9 2E-25 4.2E-30 188.8 13.4 153 24-194 64-239 (321)
30 KOG0146 RNA-binding protein ET 99.9 2.1E-25 4.6E-30 188.3 12.4 182 113-296 16-369 (371)
31 KOG0127 Nucleolar protein fibr 99.9 1.5E-24 3.3E-29 198.7 16.8 176 116-293 5-197 (678)
32 KOG0124 Polypyrimidine tract-b 99.9 5E-24 1.1E-28 186.9 17.5 250 24-289 115-532 (544)
33 KOG0109 RNA-binding protein LA 99.9 1.6E-24 3.5E-29 185.0 11.5 147 117-293 3-151 (346)
34 KOG0124 Polypyrimidine tract-b 99.9 2.4E-24 5.2E-29 188.9 12.0 169 115-294 112-292 (544)
35 KOG0147 Transcriptional coacti 99.9 7.3E-24 1.6E-28 195.0 13.8 247 24-290 181-526 (549)
36 KOG0131 Splicing factor 3b, su 99.9 3.2E-23 6.9E-28 166.1 8.8 159 20-193 7-177 (203)
37 KOG0109 RNA-binding protein LA 99.9 4.5E-22 9.7E-27 170.1 8.7 145 24-193 4-150 (346)
38 KOG0110 RNA-binding protein (R 99.9 9E-21 1.9E-25 179.1 14.4 169 116-290 385-596 (725)
39 KOG4205 RNA-binding protein mu 99.8 4.8E-21 1E-25 170.5 11.5 169 115-293 5-177 (311)
40 KOG0147 Transcriptional coacti 99.8 1.1E-21 2.4E-26 180.6 6.3 175 115-292 178-358 (549)
41 KOG4212 RNA-binding protein hn 99.8 2E-19 4.4E-24 161.3 19.9 152 24-189 46-290 (608)
42 KOG1190 Polypyrimidine tract-b 99.8 1.4E-18 3E-23 154.8 18.3 249 24-293 30-374 (492)
43 KOG0105 Alternative splicing f 99.8 2.1E-18 4.5E-23 138.8 15.2 158 115-280 5-176 (241)
44 KOG4205 RNA-binding protein mu 99.8 1.1E-18 2.4E-23 155.5 9.3 160 21-194 5-177 (311)
45 KOG4211 Splicing factor hnRNP- 99.8 2.5E-17 5.5E-22 150.3 16.4 170 113-288 7-178 (510)
46 KOG1190 Polypyrimidine tract-b 99.8 1.2E-16 2.7E-21 142.5 19.3 246 25-292 153-491 (492)
47 KOG4206 Spliceosomal protein s 99.7 5.9E-17 1.3E-21 135.0 16.0 170 115-290 8-220 (221)
48 KOG4211 Splicing factor hnRNP- 99.7 8.2E-17 1.8E-21 147.0 17.8 246 24-289 12-355 (510)
49 KOG4212 RNA-binding protein hn 99.7 9.4E-17 2E-21 144.3 15.9 178 115-294 43-296 (608)
50 PLN03134 glycine-rich RNA-bind 99.7 1.1E-16 2.4E-21 128.8 11.2 79 115-193 33-114 (144)
51 PLN03134 glycine-rich RNA-bind 99.7 1.8E-16 3.9E-21 127.6 12.1 80 212-293 33-115 (144)
52 KOG1548 Transcription elongati 99.7 3.1E-15 6.6E-20 131.2 18.0 175 113-291 131-351 (382)
53 KOG0106 Alternative splicing f 99.7 1.5E-16 3.2E-21 133.8 8.6 159 117-289 2-168 (216)
54 KOG1457 RNA binding protein (c 99.7 1.8E-15 3.8E-20 125.4 14.1 164 112-279 30-273 (284)
55 KOG0146 RNA-binding protein ET 99.6 1.6E-15 3.5E-20 128.7 10.1 80 114-193 283-365 (371)
56 PF00076 RRM_1: RNA recognitio 99.6 1.8E-15 3.8E-20 106.3 8.7 68 119-186 1-70 (70)
57 KOG0120 Splicing factor U2AF, 99.6 3.2E-14 6.9E-19 133.1 16.7 251 23-292 176-492 (500)
58 PF00076 RRM_1: RNA recognitio 99.6 8.2E-15 1.8E-19 102.8 9.1 68 216-285 1-70 (70)
59 PLN03120 nucleic acid binding 99.6 8.2E-15 1.8E-19 126.5 10.8 78 116-194 4-81 (260)
60 KOG0125 Ataxin 2-binding prote 99.6 6.1E-15 1.3E-19 128.5 9.0 79 115-193 95-174 (376)
61 KOG0121 Nuclear cap-binding pr 99.6 5.2E-15 1.1E-19 112.4 7.1 77 114-190 34-113 (153)
62 COG0724 RNA-binding proteins ( 99.6 5.3E-14 1.2E-18 123.8 14.3 156 116-273 115-285 (306)
63 KOG0122 Translation initiation 99.6 1.5E-14 3.2E-19 121.5 8.9 79 212-292 188-269 (270)
64 KOG1456 Heterogeneous nuclear 99.5 1.6E-12 3.5E-17 115.2 21.3 248 20-292 29-363 (494)
65 PF14259 RRM_6: RNA recognitio 99.5 3.4E-14 7.3E-19 100.1 8.8 68 119-186 1-70 (70)
66 KOG0122 Translation initiation 99.5 3.6E-14 7.7E-19 119.2 9.5 81 112-192 185-268 (270)
67 KOG1456 Heterogeneous nuclear 99.5 2.2E-12 4.8E-17 114.4 21.0 245 27-291 127-490 (494)
68 KOG0125 Ataxin 2-binding prote 99.5 5.5E-14 1.2E-18 122.6 9.3 80 212-293 95-175 (376)
69 PLN03120 nucleic acid binding 99.5 1.2E-13 2.5E-18 119.4 11.0 77 213-292 4-80 (260)
70 PLN03121 nucleic acid binding 99.5 1.9E-13 4.1E-18 116.2 11.3 79 115-194 4-82 (243)
71 KOG0149 Predicted RNA-binding 99.5 6.6E-14 1.4E-18 117.2 7.2 77 116-192 12-90 (247)
72 PF14259 RRM_6: RNA recognitio 99.5 2.4E-13 5.3E-18 95.6 9.0 68 216-285 1-70 (70)
73 KOG0105 Alternative splicing f 99.4 9E-13 1.9E-17 106.5 10.8 142 20-181 4-176 (241)
74 PLN03213 repressor of silencin 99.4 3.7E-13 8E-18 123.1 9.3 77 115-193 9-88 (759)
75 smart00362 RRM_2 RNA recogniti 99.4 9.4E-13 2E-17 91.8 9.3 71 118-188 1-72 (72)
76 PLN03121 nucleic acid binding 99.4 1E-12 2.3E-17 111.7 10.9 76 212-290 4-79 (243)
77 KOG0107 Alternative splicing f 99.4 3.7E-13 8E-18 107.8 7.7 76 115-193 9-85 (195)
78 smart00362 RRM_2 RNA recogniti 99.4 1.2E-12 2.7E-17 91.2 9.6 71 215-287 1-72 (72)
79 KOG4206 Spliceosomal protein s 99.4 2.6E-12 5.6E-17 107.4 12.9 155 20-191 7-220 (221)
80 PLN03213 repressor of silencin 99.4 8.3E-13 1.8E-17 120.8 9.3 79 211-293 8-89 (759)
81 KOG0149 Predicted RNA-binding 99.4 9.6E-13 2.1E-17 110.3 8.6 83 212-296 11-95 (247)
82 KOG0129 Predicted RNA-binding 99.4 9.4E-12 2E-16 114.9 15.7 173 113-289 256-451 (520)
83 KOG0126 Predicted RNA-binding 99.4 6.1E-14 1.3E-18 112.9 1.1 78 115-192 34-114 (219)
84 KOG1365 RNA-binding protein Fu 99.4 1.8E-12 3.9E-17 115.3 8.7 253 24-288 62-358 (508)
85 KOG4207 Predicted splicing fac 99.4 9.4E-13 2E-17 108.1 6.4 77 115-191 12-91 (256)
86 KOG0114 Predicted RNA-binding 99.4 3.4E-12 7.5E-17 93.6 8.5 79 112-191 14-93 (124)
87 KOG0130 RNA-binding protein RB 99.4 1.6E-12 3.5E-17 99.7 6.9 79 209-289 68-149 (170)
88 cd00590 RRM RRM (RNA recogniti 99.4 8.1E-12 1.8E-16 87.5 9.7 72 118-189 1-74 (74)
89 KOG0107 Alternative splicing f 99.4 2.3E-12 5.1E-17 103.3 7.6 76 213-293 10-86 (195)
90 KOG0114 Predicted RNA-binding 99.4 4.7E-12 1E-16 92.9 8.5 77 213-292 18-95 (124)
91 smart00360 RRM RNA recognition 99.3 5.2E-12 1.1E-16 87.6 8.3 68 121-188 1-71 (71)
92 KOG0111 Cyclophilin-type pepti 99.3 6.5E-13 1.4E-17 110.0 4.1 79 213-293 10-91 (298)
93 KOG0111 Cyclophilin-type pepti 99.3 1.2E-12 2.7E-17 108.4 5.4 82 114-195 8-92 (298)
94 KOG0113 U1 small nuclear ribon 99.3 5.5E-12 1.2E-16 109.0 9.1 79 114-192 99-180 (335)
95 smart00360 RRM RNA recognition 99.3 9.1E-12 2E-16 86.4 8.4 68 218-287 1-71 (71)
96 KOG0126 Predicted RNA-binding 99.3 3E-13 6.5E-18 108.9 0.3 76 213-290 35-113 (219)
97 cd00590 RRM RRM (RNA recogniti 99.3 2.2E-11 4.7E-16 85.3 9.8 72 215-288 1-74 (74)
98 KOG4207 Predicted splicing fac 99.3 5E-12 1.1E-16 103.9 7.3 77 212-290 12-91 (256)
99 KOG0130 RNA-binding protein RB 99.3 6.1E-12 1.3E-16 96.6 6.8 75 118-192 74-151 (170)
100 KOG0121 Nuclear cap-binding pr 99.3 7.8E-12 1.7E-16 95.2 6.9 78 211-290 34-114 (153)
101 KOG0106 Alternative splicing f 99.3 4.9E-12 1.1E-16 106.6 6.1 141 24-189 3-167 (216)
102 PF13893 RRM_5: RNA recognitio 99.3 2.5E-11 5.4E-16 81.5 8.3 55 230-289 1-56 (56)
103 KOG0113 U1 small nuclear ribon 99.3 2.4E-11 5.3E-16 105.0 9.7 78 211-290 99-179 (335)
104 KOG0128 RNA-binding protein SA 99.3 1.3E-12 2.9E-17 126.4 1.7 224 24-294 573-817 (881)
105 PF13893 RRM_5: RNA recognitio 99.3 2.6E-11 5.6E-16 81.5 7.6 55 133-190 1-56 (56)
106 KOG0108 mRNA cleavage and poly 99.3 1.4E-11 3.1E-16 114.7 8.3 77 117-193 19-98 (435)
107 COG0724 RNA-binding proteins ( 99.2 5.4E-11 1.2E-15 104.5 10.6 77 213-291 115-194 (306)
108 smart00361 RRM_1 RNA recogniti 99.2 6.3E-11 1.4E-15 83.4 7.9 59 227-287 2-70 (70)
109 smart00361 RRM_1 RNA recogniti 99.2 9.8E-11 2.1E-15 82.5 7.9 58 130-187 2-69 (70)
110 KOG0108 mRNA cleavage and poly 99.2 5.5E-11 1.2E-15 110.8 7.3 78 214-293 19-99 (435)
111 KOG0120 Splicing factor U2AF, 99.1 1.1E-10 2.4E-15 109.6 8.6 170 116-291 175-368 (500)
112 KOG1548 Transcription elongati 99.1 3.5E-09 7.6E-14 93.5 13.4 152 24-191 136-350 (382)
113 KOG0112 Large RNA-binding prot 99.1 1.4E-10 3.1E-15 113.0 4.9 160 115-296 371-535 (975)
114 KOG0226 RNA-binding proteins [ 99.0 2.1E-10 4.5E-15 97.3 4.9 162 118-289 98-267 (290)
115 KOG4210 Nuclear localization s 99.0 4E-10 8.8E-15 100.4 6.1 180 115-300 87-272 (285)
116 KOG0153 Predicted RNA-binding 99.0 1.5E-09 3.3E-14 95.9 8.9 76 210-291 225-302 (377)
117 KOG4454 RNA binding protein (R 99.0 9E-11 2E-15 97.4 0.8 132 113-273 6-143 (267)
118 KOG4454 RNA binding protein (R 99.0 3E-10 6.6E-15 94.3 3.0 141 24-188 11-158 (267)
119 KOG4307 RNA binding protein RB 98.9 2E-08 4.4E-13 95.8 13.3 74 213-288 867-943 (944)
120 KOG0132 RNA polymerase II C-te 98.9 3E-09 6.6E-14 102.5 7.5 74 116-193 421-495 (894)
121 KOG0415 Predicted peptidyl pro 98.9 2.3E-09 5.1E-14 94.8 6.1 83 210-294 236-321 (479)
122 KOG0153 Predicted RNA-binding 98.9 6.7E-09 1.5E-13 91.8 7.9 76 113-192 225-302 (377)
123 KOG4208 Nucleolar RNA-binding 98.9 6.6E-09 1.4E-13 85.8 7.3 80 212-292 48-130 (214)
124 KOG1365 RNA-binding protein Fu 98.8 2E-08 4.4E-13 89.8 9.4 162 115-282 59-233 (508)
125 KOG0415 Predicted peptidyl pro 98.8 6.5E-09 1.4E-13 92.1 6.1 78 115-192 238-318 (479)
126 KOG1457 RNA binding protein (c 98.8 2.4E-08 5.3E-13 83.3 9.0 88 212-301 33-127 (284)
127 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.9E-08 6.2E-13 92.8 8.0 84 211-296 403-489 (940)
128 KOG0112 Large RNA-binding prot 98.7 2.3E-08 5E-13 98.0 7.6 149 23-193 373-531 (975)
129 KOG0132 RNA polymerase II C-te 98.7 2.4E-08 5.2E-13 96.4 7.6 75 211-291 419-494 (894)
130 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.6E-08 5.6E-13 93.1 7.5 79 115-193 404-485 (940)
131 KOG4208 Nucleolar RNA-binding 98.7 4.6E-08 1E-12 80.9 7.8 78 115-192 48-129 (214)
132 KOG0533 RRM motif-containing p 98.6 1.1E-07 2.4E-12 82.1 8.4 78 115-192 82-161 (243)
133 KOG4210 Nuclear localization s 98.6 2.9E-08 6.3E-13 88.5 5.0 156 23-192 89-263 (285)
134 KOG0533 RRM motif-containing p 98.6 1.3E-07 2.8E-12 81.7 8.6 79 212-292 82-162 (243)
135 KOG0128 RNA-binding protein SA 98.6 8.6E-09 1.9E-13 100.5 1.4 142 23-192 668-814 (881)
136 KOG0129 Predicted RNA-binding 98.6 4.1E-07 8.9E-12 84.6 10.6 141 20-174 257-431 (520)
137 KOG2193 IGF-II mRNA-binding pr 98.6 7.1E-09 1.5E-13 93.7 -1.4 148 118-289 3-154 (584)
138 KOG4660 Protein Mei2, essentia 98.5 8.4E-08 1.8E-12 89.8 5.3 166 115-291 74-249 (549)
139 KOG0151 Predicted splicing reg 98.5 2.5E-07 5.4E-12 88.7 8.2 84 210-295 171-260 (877)
140 KOG0116 RasGAP SH3 binding pro 98.5 1.9E-07 4E-12 86.9 6.9 77 116-192 288-366 (419)
141 PF04059 RRM_2: RNA recognitio 98.5 8.7E-07 1.9E-11 65.8 9.1 76 116-191 1-85 (97)
142 KOG0151 Predicted splicing reg 98.5 2.8E-07 6.1E-12 88.4 8.0 79 115-193 173-257 (877)
143 KOG4676 Splicing factor, argin 98.5 5.3E-08 1.1E-12 87.4 2.8 171 116-290 7-224 (479)
144 KOG4209 Splicing factor RNPS1, 98.5 2.5E-07 5.4E-12 80.0 6.3 81 210-292 98-180 (231)
145 KOG4307 RNA binding protein RB 98.5 3.6E-07 7.8E-12 87.4 7.7 170 116-288 311-510 (944)
146 PF04059 RRM_2: RNA recognitio 98.5 1.2E-06 2.5E-11 65.2 8.8 78 214-291 2-86 (97)
147 KOG0116 RasGAP SH3 binding pro 98.5 4.6E-07 1E-11 84.3 8.0 82 213-296 288-371 (419)
148 KOG4209 Splicing factor RNPS1, 98.5 2.5E-07 5.5E-12 79.9 5.9 82 112-193 97-180 (231)
149 KOG0226 RNA-binding proteins [ 98.4 4.9E-07 1.1E-11 77.1 6.1 148 25-190 99-267 (290)
150 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 3.8E-11 61.4 7.7 67 214-289 3-74 (90)
151 KOG4660 Protein Mei2, essentia 98.3 1.1E-06 2.3E-11 82.6 5.6 74 207-285 69-143 (549)
152 PF11608 Limkain-b1: Limkain b 98.1 1.4E-05 3E-10 56.9 6.5 67 117-191 3-75 (90)
153 PF08777 RRM_3: RNA binding mo 97.8 7.8E-05 1.7E-09 56.6 7.0 68 214-287 2-75 (105)
154 PF08777 RRM_3: RNA binding mo 97.7 0.00015 3.2E-09 55.0 7.2 54 117-174 2-55 (105)
155 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.6E-09 47.6 5.2 52 117-173 2-53 (53)
156 COG5175 MOT2 Transcriptional r 97.6 9.2E-05 2E-09 65.7 4.6 114 116-235 114-242 (480)
157 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00035 7.5E-09 52.3 6.3 73 214-293 7-93 (100)
158 KOG0115 RNA-binding protein p5 97.5 0.00027 5.8E-09 60.7 6.1 83 168-273 6-90 (275)
159 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00074 1.6E-08 50.6 7.5 75 115-190 5-89 (100)
160 KOG1995 Conserved Zn-finger pr 97.4 0.00016 3.5E-09 64.9 3.8 78 115-192 65-153 (351)
161 COG5175 MOT2 Transcriptional r 97.4 0.00052 1.1E-08 61.1 6.6 76 214-291 115-202 (480)
162 KOG1995 Conserved Zn-finger pr 97.3 0.00021 4.6E-09 64.1 4.1 79 212-292 65-154 (351)
163 KOG2314 Translation initiation 97.3 0.00091 2E-08 63.4 8.2 74 212-287 57-139 (698)
164 KOG1996 mRNA splicing factor [ 97.3 0.00076 1.7E-08 59.0 7.0 77 214-292 282-367 (378)
165 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00086 1.9E-08 44.2 5.3 52 214-272 2-53 (53)
166 KOG2314 Translation initiation 97.2 0.0013 2.7E-08 62.4 8.2 76 114-189 56-140 (698)
167 PF08952 DUF1866: Domain of un 97.2 0.0018 3.9E-08 51.5 7.7 56 228-291 51-106 (146)
168 KOG2416 Acinus (induces apopto 96.8 0.0014 2.9E-08 62.6 4.0 76 210-290 441-520 (718)
169 KOG3152 TBP-binding protein, a 96.8 0.00078 1.7E-08 57.9 2.1 69 116-184 74-157 (278)
170 PF08952 DUF1866: Domain of un 96.7 0.0074 1.6E-07 48.0 7.4 54 132-191 52-105 (146)
171 KOG2193 IGF-II mRNA-binding pr 96.6 0.00017 3.7E-09 65.9 -2.9 142 23-190 2-154 (584)
172 KOG2202 U2 snRNP splicing fact 96.6 0.0012 2.6E-08 56.9 2.2 61 228-290 83-146 (260)
173 KOG3152 TBP-binding protein, a 96.5 0.00095 2.1E-08 57.4 1.0 66 18-97 70-150 (278)
174 KOG1855 Predicted RNA-binding 96.5 0.0034 7.5E-08 57.7 4.5 69 108-176 223-307 (484)
175 KOG2202 U2 snRNP splicing fact 96.5 0.0014 2.9E-08 56.5 1.8 53 139-191 92-146 (260)
176 PF08675 RNA_bind: RNA binding 96.5 0.013 2.9E-07 41.8 6.4 54 116-176 9-63 (87)
177 KOG4849 mRNA cleavage factor I 96.4 0.0025 5.5E-08 57.1 3.3 74 116-189 80-158 (498)
178 KOG4849 mRNA cleavage factor I 96.4 0.0034 7.4E-08 56.2 4.1 74 213-288 80-158 (498)
179 KOG4676 Splicing factor, argin 96.3 0.0081 1.7E-07 54.7 5.8 78 214-293 8-91 (479)
180 KOG1855 Predicted RNA-binding 96.1 0.0068 1.5E-07 55.8 4.3 66 210-277 228-309 (484)
181 PF10309 DUF2414: Protein of u 95.8 0.072 1.6E-06 36.1 7.2 54 214-273 6-60 (62)
182 KOG1996 mRNA splicing factor [ 95.4 0.051 1.1E-06 47.9 6.5 62 130-191 300-365 (378)
183 PF07576 BRAP2: BRCA1-associat 95.3 0.16 3.5E-06 38.7 8.4 66 214-280 14-80 (110)
184 PF07576 BRAP2: BRCA1-associat 94.8 0.33 7.1E-06 37.1 8.7 63 119-181 16-80 (110)
185 KOG0804 Cytoplasmic Zn-finger 94.7 0.21 4.4E-06 46.7 8.9 68 114-181 72-141 (493)
186 KOG2591 c-Mpl binding protein, 94.5 0.081 1.8E-06 50.5 5.8 69 115-188 174-247 (684)
187 KOG2416 Acinus (induces apopto 94.4 0.034 7.4E-07 53.4 3.1 73 115-191 443-520 (718)
188 PF04847 Calcipressin: Calcipr 94.3 0.19 4.1E-06 42.0 7.2 62 226-293 8-72 (184)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 94.3 0.067 1.5E-06 44.5 4.4 76 115-190 6-95 (176)
190 PF07292 NID: Nmi/IFP 35 domai 94.2 0.066 1.4E-06 39.0 3.7 74 159-237 1-76 (88)
191 PF15023 DUF4523: Protein of u 94.2 0.14 3.1E-06 40.4 5.7 71 115-191 85-160 (166)
192 PF10309 DUF2414: Protein of u 94.2 0.3 6.5E-06 33.1 6.6 53 116-174 5-60 (62)
193 KOG0115 RNA-binding protein p5 94.0 0.068 1.5E-06 46.3 4.0 74 117-190 32-111 (275)
194 PF08675 RNA_bind: RNA binding 94.0 0.2 4.4E-06 35.9 5.7 53 214-275 10-63 (87)
195 PF15023 DUF4523: Protein of u 93.6 0.23 5E-06 39.3 5.9 73 210-290 83-160 (166)
196 KOG2135 Proteins containing th 93.6 0.045 9.7E-07 51.2 2.2 65 221-291 380-445 (526)
197 KOG2135 Proteins containing th 93.3 0.046 1E-06 51.1 1.8 73 116-192 372-445 (526)
198 KOG4285 Mitotic phosphoprotein 93.2 0.17 3.6E-06 44.9 5.0 69 116-189 197-266 (350)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 93.0 0.13 2.7E-06 42.8 3.8 77 213-291 7-97 (176)
200 KOG0804 Cytoplasmic Zn-finger 92.7 0.34 7.5E-06 45.3 6.6 67 213-280 74-141 (493)
201 KOG2068 MOT2 transcription fac 92.4 0.056 1.2E-06 48.6 1.0 79 214-294 78-165 (327)
202 KOG2068 MOT2 transcription fac 92.3 0.068 1.5E-06 48.0 1.5 79 116-194 77-164 (327)
203 PF04847 Calcipressin: Calcipr 92.1 0.57 1.2E-05 39.2 6.7 60 129-192 8-70 (184)
204 KOG4285 Mitotic phosphoprotein 91.1 0.93 2E-05 40.3 7.2 68 214-288 198-266 (350)
205 KOG4574 RNA-binding protein (c 90.9 0.17 3.7E-06 50.7 2.7 70 217-292 302-374 (1007)
206 PF11767 SET_assoc: Histone ly 89.6 1.6 3.5E-05 30.0 5.9 54 224-286 11-65 (66)
207 KOG2318 Uncharacterized conser 88.7 2.1 4.6E-05 41.4 8.0 78 211-288 172-304 (650)
208 PF11767 SET_assoc: Histone ly 88.6 2.2 4.8E-05 29.3 6.1 54 127-187 11-65 (66)
209 KOG2591 c-Mpl binding protein, 88.2 1.8 3.9E-05 41.7 7.1 67 214-286 176-246 (684)
210 KOG2253 U1 snRNP complex, subu 87.4 0.5 1.1E-05 46.3 3.1 118 106-236 30-158 (668)
211 PF14111 DUF4283: Domain of un 87.0 1.2 2.6E-05 35.6 4.8 109 127-251 28-141 (153)
212 KOG4574 RNA-binding protein (c 86.7 0.55 1.2E-05 47.3 2.9 71 119-193 301-374 (1007)
213 PF03880 DbpA: DbpA RNA bindin 85.6 4.4 9.5E-05 28.3 6.5 59 224-289 12-74 (74)
214 KOG2253 U1 snRNP complex, subu 85.3 0.89 1.9E-05 44.6 3.5 69 212-289 39-108 (668)
215 PF10567 Nab6_mRNP_bdg: RNA-re 84.6 29 0.00064 31.0 14.4 172 115-289 14-229 (309)
216 PF03468 XS: XS domain; Inter 77.9 2.3 5E-05 32.7 2.9 56 118-174 10-75 (116)
217 KOG4483 Uncharacterized conser 77.7 6.2 0.00014 36.6 5.9 56 213-274 391-446 (528)
218 PF03880 DbpA: DbpA RNA bindin 77.5 13 0.00028 25.9 6.5 58 126-190 11-74 (74)
219 KOG4483 Uncharacterized conser 68.5 12 0.00026 34.8 5.5 58 113-175 388-446 (528)
220 KOG4410 5-formyltetrahydrofola 67.0 7.5 0.00016 34.5 3.7 47 116-166 330-377 (396)
221 PF10567 Nab6_mRNP_bdg: RNA-re 61.5 4.9 0.00011 35.8 1.6 35 24-58 17-51 (309)
222 KOG2318 Uncharacterized conser 58.0 45 0.00097 32.7 7.4 75 115-189 173-304 (650)
223 PF15513 DUF4651: Domain of un 52.8 12 0.00026 25.2 2.0 23 37-59 9-31 (62)
224 TIGR02542 B_forsyth_147 Bacter 49.1 12 0.00027 28.5 1.8 43 124-166 82-129 (145)
225 PF03468 XS: XS domain; Inter 46.5 23 0.0005 27.2 3.0 46 225-273 29-75 (116)
226 PF11411 DNA_ligase_IV: DNA li 44.7 17 0.00036 21.7 1.5 16 33-48 20-35 (36)
227 PRK14548 50S ribosomal protein 41.6 30 0.00064 25.0 2.8 45 24-68 22-68 (84)
228 TIGR03636 L23_arch archaeal ri 41.0 93 0.002 22.0 5.2 56 215-271 15-70 (77)
229 COG5638 Uncharacterized conser 39.1 33 0.00071 32.1 3.3 40 211-250 144-186 (622)
230 KOG2891 Surface glycoprotein [ 39.0 18 0.00039 32.0 1.5 34 23-56 150-195 (445)
231 PRK14548 50S ribosomal protein 38.6 1.1E+02 0.0025 22.0 5.4 56 216-272 23-78 (84)
232 PF14893 PNMA: PNMA 36.9 78 0.0017 29.1 5.4 24 115-138 17-40 (331)
233 KOG4019 Calcineurin-mediated s 35.2 39 0.00084 28.1 2.8 76 214-295 11-93 (193)
234 KOG4410 5-formyltetrahydrofola 35.2 1E+02 0.0022 27.6 5.5 45 214-264 331-376 (396)
235 PF09707 Cas_Cas2CT1978: CRISP 34.1 90 0.0019 22.6 4.3 48 116-164 25-72 (86)
236 PF07292 NID: Nmi/IFP 35 domai 31.3 30 0.00064 25.2 1.4 26 112-137 48-73 (88)
237 KOG4213 RNA-binding protein La 29.8 31 0.00068 28.6 1.5 71 115-189 110-183 (205)
238 KOG1295 Nonsense-mediated deca 28.2 66 0.0014 29.9 3.4 66 115-180 6-77 (376)
239 KOG0156 Cytochrome P450 CYP2 s 26.6 1E+02 0.0022 30.0 4.6 62 117-185 33-97 (489)
240 smart00457 MACPF membrane-atta 26.3 38 0.00083 28.3 1.5 28 27-54 30-59 (194)
241 COG0030 KsgA Dimethyladenosine 25.8 89 0.0019 27.7 3.7 35 116-150 95-129 (259)
242 KOG1295 Nonsense-mediated deca 25.0 86 0.0019 29.2 3.5 66 214-280 8-78 (376)
243 KOG4008 rRNA processing protei 24.5 61 0.0013 28.1 2.3 35 114-148 38-72 (261)
244 PF01823 MACPF: MAC/Perforin d 23.9 43 0.00093 27.9 1.3 28 27-54 53-85 (212)
245 PF13046 DUF3906: Protein of u 23.8 93 0.002 21.1 2.6 33 129-161 31-63 (64)
246 PRK11558 putative ssRNA endonu 23.4 1.5E+02 0.0033 22.0 3.9 49 116-165 27-75 (97)
247 PTZ00191 60S ribosomal protein 22.9 2.5E+02 0.0055 22.5 5.4 55 215-270 83-137 (145)
248 KOG4365 Uncharacterized conser 22.5 12 0.00027 35.2 -2.3 83 214-299 4-89 (572)
249 KOG2295 C2H2 Zn-finger protein 21.5 24 0.00051 34.4 -0.8 85 213-301 231-318 (648)
250 COG0030 KsgA Dimethyladenosine 21.0 69 0.0015 28.4 2.1 33 24-56 97-129 (259)
251 PF11823 DUF3343: Protein of u 21.0 1.2E+02 0.0026 20.8 2.9 24 256-279 2-26 (73)
252 COG3254 Uncharacterized conser 20.9 3.7E+02 0.0079 20.3 5.5 42 132-174 28-69 (105)
253 KOG4365 Uncharacterized conser 20.0 25 0.00054 33.2 -0.9 72 118-190 5-79 (572)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.1e-44 Score=332.67 Aligned_cols=252 Identities=18% Similarity=0.287 Sum_probs=204.9
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc--
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~-- 97 (303)
.+|||+|||+++|+++|+++|++||+|.+|+|++++.++.++ ||+| .+ .+ +|.+|+..+++
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f-----~~-----~~----~A~~Ai~~l~g~~ 69 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNY-----VR-----PE----DAEKAVNSLNGLR 69 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEE-----Cc-----HH----HHHHHHhhcccEE
Confidence 489999999999999999999999999999999998765544 9999 88 88 99999999987
Q ss_pred --CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHH
Q 022058 98 --GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172 (303)
Q Consensus 98 --g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~A 172 (303)
|+. .+... .........++|||+|||+++++++|+++|+.||.|..+.++.+..+ ++|||||+|.+.++|++|
T Consensus 70 l~g~~i~v~~a--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~a 147 (352)
T TIGR01661 70 LQNKTIKVSYA--RPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRA 147 (352)
T ss_pred ECCeeEEEEee--cccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 333 11111 11122335678999999999999999999999999999999987643 799999999999999999
Q ss_pred HH-hCCcccCC--eeEEEeecCCCCCCCC------------CCC------------------------C-----------
Q 022058 173 LN-LGGTMLGY--YPVRVLPSKTAILPVN------------PTF------------------------L----------- 202 (303)
Q Consensus 173 i~-l~g~~~~g--~~i~v~~~~~~~~~~~------------~~~------------------------~----------- 202 (303)
++ |||..+.| ++|.|.++........ +.. .
T Consensus 148 i~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T TIGR01661 148 IKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLA 227 (352)
T ss_pred HHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhh
Confidence 98 99999876 7788888753321000 000 0
Q ss_pred --------------CCc-c----------------cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC
Q 022058 203 --------------PRS-E----------------DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH 251 (303)
Q Consensus 203 --------------~~~-~----------------~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~ 251 (303)
... . ......+.+|||+|||+.+++++|+++|++| |.|.+|+|++|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f--G~v~~v~i~~d~ 305 (352)
T TIGR01661 228 HQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF--GAVQNVKIIRDL 305 (352)
T ss_pred hhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeEcC
Confidence 000 0 0001123479999999999999999999999 999999999985
Q ss_pred --CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 252 --VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 252 --~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
|.++|||||+|.+.++|.+|+. |||..|+|+.|+|.|+.+.
T Consensus 306 ~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 306 TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 7899999999999999999998 9999999999999998754
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-39 Score=318.27 Aligned_cols=256 Identities=20% Similarity=0.308 Sum_probs=209.6
Q ss_pred CCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhccc-
Q 022058 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ- 97 (303)
Q Consensus 21 ~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~- 97 (303)
..++|||+|||+++|+++|+++|++||.|.+|+++.+..++.++ ||+| .+ .+ +|.+|+..+++
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F-----~~-----~e----~A~~Ai~~lng~ 152 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHF-----EK-----EE----SAKAAIQKVNGM 152 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEE-----CC-----HH----HHHHHHHHhccc
Confidence 35689999999999999999999999999999999988765555 9999 88 88 89999999887
Q ss_pred ---CCC-CCCchhhhhcc---CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHH
Q 022058 98 ---GRK-RLSGRAFRAQR---EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGA 169 (303)
Q Consensus 98 ---g~~-~~~~~~~~~~~---~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A 169 (303)
|+. .+........+ .....++|||+|||+++|+++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|
T Consensus 153 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 153 LLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred EecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 222 11111111111 2234678999999999999999999999999999999998765 899999999999999
Q ss_pred HHHHH-hCCcccC----CeeEEEeecCCCCCCC---CCCCCC-CcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCc
Q 022058 170 RAALN-LGGTMLG----YYPVRVLPSKTAILPV---NPTFLP-RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG 240 (303)
Q Consensus 170 ~~Ai~-l~g~~~~----g~~i~v~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G 240 (303)
.+|++ +||..+. |+.|.|.++....... ...+.. ...........+|||+||+..+++++|+++|++| |
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~--G 310 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC--G 310 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc--C
Confidence 99998 9999999 9999999875432110 000000 0011112345789999999999999999999999 9
Q ss_pred ceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 241 EVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 241 ~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
.|.+|+|+.|. |.++|||||+|.+.++|.+|+. |||..++|+.|.|.++...
T Consensus 311 ~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 99999999985 8899999999999999999998 9999999999999998753
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.7e-40 Score=319.31 Aligned_cols=245 Identities=21% Similarity=0.318 Sum_probs=206.6
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
.|||+|||+++|+++|+++|++||+|.+|+|++|..++.++ ||+| .+ .+ +|++|+..+++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F-----~~-----~~----~A~~Al~~ln~~~i 67 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNF-----QN-----PA----DAERALETMNFKRL 67 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEE-----CC-----HH----HHHHHHHHhCCCEE
Confidence 69999999999999999999999999999999998866554 9999 88 88 99999998876
Q ss_pred -CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH
Q 022058 98 -GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 98 -g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~ 174 (303)
|+. ++.+.............+|||+|||+++++++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|.+|++
T Consensus 68 ~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 68 GGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQ 147 (562)
T ss_pred CCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHH
Confidence 333 222211111112224567999999999999999999999999999999998766 89999999999999999998
Q ss_pred -hCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-C
Q 022058 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-V 252 (303)
Q Consensus 175 -l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~ 252 (303)
+||..+.|+.|.|.......... .......++|||+|||.++++++|+++|+.| |.|.++.+.++. +
T Consensus 148 ~lng~~~~~~~i~v~~~~~~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f--G~i~~~~i~~~~~g 216 (562)
T TIGR01628 148 KVNGMLLNDKEVYVGRFIKKHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF--GEITSAAVMKDGSG 216 (562)
T ss_pred HhcccEecCceEEEeccccccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHhc--CCEEEEEEEECCCC
Confidence 99999999999997653221100 1122345789999999999999999999999 999999999885 7
Q ss_pred CcccEEEEEEcCHHHHHHHHH-hCCceeC----CeeeEEeecCCCC
Q 022058 253 HSTRIAFVEFAVAESAILALN-CSGMVLG----SQPIRVSPSKTPV 293 (303)
Q Consensus 253 ~~~g~afV~f~~~e~A~~Ai~-l~g~~~~----g~~l~v~~a~~~~ 293 (303)
+++|||||+|.+.++|.+|+. |||..+. |+.|.|.++....
T Consensus 217 ~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 217 RSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 899999999999999999998 9999999 9999999886543
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-39 Score=273.67 Aligned_cols=250 Identities=18% Similarity=0.270 Sum_probs=209.3
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcccCCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~ 100 (303)
+|.|-=||..+|++|||.||+..|+|++|++++|+-++++- ||.| .. ++ ||++|++.+||-|-
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNY-----v~-----p~----DAe~AintlNGLrL 108 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY-----VR-----PK----DAEKAINTLNGLRL 108 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeee-----cC-----hH----HHHHHHhhhcceee
Confidence 58889999999999999999999999999999999877765 9999 88 88 99999999998322
Q ss_pred -----CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHH
Q 022058 101 -----RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173 (303)
Q Consensus 101 -----~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai 173 (303)
+++... ...+.....+|||.+||..+|..+|+.+|++||.|..-+|+.|..+ ++|.|||.|...++|+.||
T Consensus 109 Q~KTIKVSyAR--PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 109 QNKTIKVSYAR--PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred ccceEEEEecc--CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 222211 1223446788999999999999999999999999998899888776 8999999999999999999
Q ss_pred H-hCCcccCC--eeEEEeecCCCCCCC----------CC----------------------------CCCCCcc------
Q 022058 174 N-LGGTMLGY--YPVRVLPSKTAILPV----------NP----------------------------TFLPRSE------ 206 (303)
Q Consensus 174 ~-l~g~~~~g--~~i~v~~~~~~~~~~----------~~----------------------------~~~~~~~------ 206 (303)
+ |||+.-.| .+|.|+++..+.... +| .|.|-..
T Consensus 187 k~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l 266 (360)
T KOG0145|consen 187 KGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGL 266 (360)
T ss_pred HhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccccccee
Confidence 9 99998876 789999985542100 00 0111110
Q ss_pred -----cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCce
Q 022058 207 -----DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMV 278 (303)
Q Consensus 207 -----~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~ 278 (303)
+.......+|||.||.++.+|.-||++|.+| |.|..|+|++|- ++++|||||++.+.++|..||. |||+.
T Consensus 267 ~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF--GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 267 AGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred eeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc--cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 1112346899999999999999999999999 999999999995 6899999999999999999998 99999
Q ss_pred eCCeeeEEeecCC
Q 022058 279 LGSQPIRVSPSKT 291 (303)
Q Consensus 279 ~~g~~l~v~~a~~ 291 (303)
+++|.|+|+|...
T Consensus 345 lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 345 LGDRVLQVSFKTN 357 (360)
T ss_pred ccceEEEEEEecC
Confidence 9999999999754
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=289.26 Aligned_cols=246 Identities=20% Similarity=0.256 Sum_probs=206.7
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcccCC
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR 99 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~ 99 (303)
-.|||+.||-++.|+||+.||++.|+|.++||+.|+.++.++ ||.| .+ .+ +|+.|++.+|+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf-----~~-----Ke----~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTF-----CT-----KE----EAQEAIKELNNYE 149 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEe-----ec-----HH----HHHHHHHHhhCcc
Confidence 359999999999999999999999999999999997655544 9999 88 88 9999999999832
Q ss_pred CCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCc-eeEEEEeeCCC---CCceEEEEEecCHHHHHHHHH-
Q 022058 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCGDPH---SVLRFAFVEFADEHGARAALN- 174 (303)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~~~---~~~G~~fV~f~~~~~A~~Ai~- 174 (303)
-+....+ ...-...++.|||||||.+.++++|.+.+++.++ |.+|.+...+. .+||||||+|.++..|..|..
T Consensus 150 ir~GK~i--gvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 150 IRPGKLL--GVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred ccCCCEe--EEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 2211111 1112336889999999999999999999998875 67777766443 389999999999999999996
Q ss_pred -hCC-cccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCC
Q 022058 175 -LGG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV 252 (303)
Q Consensus 175 -l~g-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~ 252 (303)
+++ ..+.|..+.|.|+++...+ +++ .....+.|||+||+.++|++.|+++|++| |.|++|+.++|
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~--------ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~--G~veRVkk~rD-- 294 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEP--------DED-TMSKVKVLYVRNLMESTTEETLKKLFNEF--GKVERVKKPRD-- 294 (506)
T ss_pred ccCCceeecCCcceeeccCcccCC--------Chh-hhhheeeeeeeccchhhhHHHHHHHHHhc--cceEEeecccc--
Confidence 554 5568999999999754321 111 33456899999999999999999999999 99999999988
Q ss_pred CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCCCCC
Q 022058 253 HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRPRVTRPG 301 (303)
Q Consensus 253 ~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~r~~r~~ 301 (303)
||||.|.++++|.+||+ |||++|+|..|.|.+|||+...+.+|+.
T Consensus 295 ----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r~~ 340 (506)
T KOG0117|consen 295 ----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKERKA 340 (506)
T ss_pred ----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccchhh
Confidence 99999999999999999 9999999999999999999999988854
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.5e-38 Score=300.11 Aligned_cols=242 Identities=20% Similarity=0.224 Sum_probs=193.4
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhcccCCC
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~ 100 (303)
.+|||+|||+++|+++|+++|++||+|.+|+|++|..+..++ ||+| .+ .+ +|++|+..|++-.-
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F-----~~-----~e----~A~~Ai~~lng~~i 124 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTF-----CG-----KE----EAKEAVKLLNNYEI 124 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEe-----CC-----HH----HHHHHHHHcCCCee
Confidence 479999999999999999999999999999999996555554 9999 88 88 99999999987211
Q ss_pred CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCc-eeEEEEeeC---CCCCceEEEEEecCHHHHHHHHH-h
Q 022058 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCGD---PHSVLRFAFVEFADEHGARAALN-L 175 (303)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~---~~~~~G~~fV~f~~~~~A~~Ai~-l 175 (303)
. ..+... -......++|||+|||+++++++|.+.|+.++. +.++.+... ...++|||||+|.++++|..|+. |
T Consensus 125 ~-~Gr~l~-V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 125 R-PGRLLG-VCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred c-CCcccc-ccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 0 000100 012234788999999999999999999999864 444444332 12379999999999999999997 6
Q ss_pred CC--cccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCC
Q 022058 176 GG--TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH 253 (303)
Q Consensus 176 ~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~ 253 (303)
+. ..+.|+.|.|.|+.+.... ........++|||+||+..+++++|+++|++|.+|.|++|.++++
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~~~---------d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg--- 270 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEEEV---------DEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD--- 270 (578)
T ss_pred hccceEecCceEEEEeecccccc---------cccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC---
Confidence 53 4578999999998643211 011122357899999999999999999999973479999987653
Q ss_pred cccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 022058 254 STRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRP 295 (303)
Q Consensus 254 ~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~ 295 (303)
||||+|.+.++|.+|++ |||..|.|+.|+|+|++|+...
T Consensus 271 ---fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 271 ---YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred ---eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99999999999999998 9999999999999999987654
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-37 Score=258.56 Aligned_cols=228 Identities=22% Similarity=0.299 Sum_probs=188.1
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhcccCCCCCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLS 103 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~~~~ 103 (303)
+|||+||++++||+-|-.||++.|+|++++|+.+.- -|.+ +. .. +.+.+
T Consensus 8 tlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-----~v~w-----a~-----------------~p--~nQsk-- 56 (321)
T KOG0148|consen 8 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-----KVNW-----AT-----------------AP--GNQSK-- 56 (321)
T ss_pred eEEeeccChhhHHHHHHHHHHhccccccceeehhhh-----cccc-----cc-----------------Cc--ccCCC--
Confidence 899999999999999999999999999999997732 2222 22 00 11111
Q ss_pred chhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCccc
Q 022058 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTML 180 (303)
Q Consensus 104 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~ 180 (303)
........+||+.|...++-++|++.|.+||+|.+++|++|..+ |||||||.|.+.++|++||. |||++|
T Consensus 57 -------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 57 -------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred -------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 11112566999999999999999999999999999999999987 89999999999999999998 999999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCCc--ccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEE
Q 022058 181 GYYPVRVLPSKTAILPVNPTFLPRS--EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIA 258 (303)
Q Consensus 181 ~g~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~a 258 (303)
++|.|+..|+..+....+.....-+ -...++..++|||+|++..+++++|++.|++| |.|..|+|.+++| |+
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f--G~I~EVRvFk~qG----Ya 203 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF--GPIQEVRVFKDQG----YA 203 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC--CcceEEEEecccc----eE
Confidence 9999999999655421111100000 01224567899999999999999999999999 9999999999986 99
Q ss_pred EEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 022058 259 FVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRP 295 (303)
Q Consensus 259 fV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~ 295 (303)
||.|.+.|+|..||. |||.+++|+.+++.|.|.....
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999997 9999999999999999876544
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.6e-36 Score=288.95 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=196.1
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc----CC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GR 99 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~----g~ 99 (303)
+|+|+||++++|+++|+++|++||+|.+|.+.++..+ ...||+| .+ .+ +|.+|+..||+ ++
T Consensus 98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~-~~afVef-----~~-----~~----~A~~A~~~Lng~~i~~~ 162 (481)
T TIGR01649 98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV-FQALVEF-----ES-----VN----SAQHAKAALNGADIYNG 162 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc-eEEEEEE-----CC-----HH----HHHHHHHHhcCCcccCC
Confidence 5899999999999999999999999999999876532 1239999 88 88 99999998887 21
Q ss_pred C-----------CCC-----chh-------h--------------hhc--------------------------------
Q 022058 100 K-----------RLS-----GRA-------F--------------RAQ-------------------------------- 110 (303)
Q Consensus 100 ~-----------~~~-----~~~-------~--------------~~~-------------------------------- 110 (303)
. .+. ... . ...
T Consensus 163 ~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 242 (481)
T TIGR01649 163 CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMG 242 (481)
T ss_pred ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCC
Confidence 0 000 000 0 000
Q ss_pred ---------------------------cCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEE
Q 022058 111 ---------------------------REDSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162 (303)
Q Consensus 111 ---------------------------~~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~ 162 (303)
......++|||+|||+ .+++++|+++|+.||.|.+|+++.+. +|||||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~ 319 (481)
T TIGR01649 243 PPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIE 319 (481)
T ss_pred CcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEE
Confidence 0012456899999998 69999999999999999999999864 5899999
Q ss_pred ecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCC------------CCC----C-ccc------ccccccceEEE
Q 022058 163 FADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPT------------FLP----R-SED------EREMCSRTVYC 218 (303)
Q Consensus 163 f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~------------~~~----~-~~~------~~~~~~~~l~V 218 (303)
|.+.++|..|+. |||..|.|++|.|.+++......... +.. + ... ....+..+|||
T Consensus 320 f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 320 MADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 999999999998 99999999999999975432111000 000 0 000 01235679999
Q ss_pred cCCCCCCCHHHHHHHhhhhcCcc--eeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCee------eEEeec
Q 022058 219 TNIDKKVPQAEVKQFFEAACGGE--VTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQP------IRVSPS 289 (303)
Q Consensus 219 ~nL~~~~t~~~L~~~F~~~~~G~--i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~------l~v~~a 289 (303)
+|||.++++++|+++|+.| |. |..+++..+.+..+|+|||+|.+.++|.+|+. |||+.|.++. |+|+|+
T Consensus 400 ~NLp~~~tee~L~~lF~~~--G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAEN--GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhc--CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 9999999999999999999 97 88898877665568899999999999999998 9999999985 999999
Q ss_pred CCC
Q 022058 290 KTP 292 (303)
Q Consensus 290 ~~~ 292 (303)
++.
T Consensus 478 ~~~ 480 (481)
T TIGR01649 478 TSR 480 (481)
T ss_pred cCC
Confidence 865
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.6e-36 Score=288.93 Aligned_cols=246 Identities=20% Similarity=0.228 Sum_probs=191.0
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc-----
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----- 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~----- 97 (303)
..|||+|||+++|+++|+++|++||+|.+|.+++++ .-.||+| .+ .+ +|++|+..++.
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k---~~afVef-----~~-----~e----~A~~Ai~~~~~~~~~l 65 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK---RQALVEF-----ED-----EE----SAKACVNFATSVPIYI 65 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC---CEEEEEe-----Cc-----hH----HHHHHHHHhhcCCceE
Confidence 479999999999999999999999999999999753 1229999 88 77 89999986532
Q ss_pred -CCC-CCCchh----hhhc------cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecC
Q 022058 98 -GRK-RLSGRA----FRAQ------REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165 (303)
Q Consensus 98 -g~~-~~~~~~----~~~~------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~ 165 (303)
|+. .+.+.. .... ..+..-..|||+||++.+|+++|+++|+.||.|.+|.++++.. +|+|||+|.+
T Consensus 66 ~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~--~~~afVef~~ 143 (481)
T TIGR01649 66 RGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN--VFQALVEFES 143 (481)
T ss_pred cCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--ceEEEEEECC
Confidence 333 111100 0000 0111223699999999999999999999999999999987654 4799999999
Q ss_pred HHHHHHHHH-hCCcccCC--eeEEEeecCCCCCC------CC-----CCC------------CCCcc-------------
Q 022058 166 EHGARAALN-LGGTMLGY--YPVRVLPSKTAILP------VN-----PTF------------LPRSE------------- 206 (303)
Q Consensus 166 ~~~A~~Ai~-l~g~~~~g--~~i~v~~~~~~~~~------~~-----~~~------------~~~~~------------- 206 (303)
.++|.+|++ |||..|.| +.|+|.|++..... .. +.. ..+..
T Consensus 144 ~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (481)
T TIGR01649 144 VNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHD 223 (481)
T ss_pred HHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCc
Confidence 999999998 99999954 68999887642210 00 000 00000
Q ss_pred ---------------------------------------------cccccccceEEEcCCCC-CCCHHHHHHHhhhhcCc
Q 022058 207 ---------------------------------------------DEREMCSRTVYCTNIDK-KVPQAEVKQFFEAACGG 240 (303)
Q Consensus 207 ---------------------------------------------~~~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G 240 (303)
.....+..+|||+|||+ .+++++|+++|+.| |
T Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y--G 301 (481)
T TIGR01649 224 GYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY--G 301 (481)
T ss_pred ccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc--C
Confidence 00012457999999998 69999999999999 9
Q ss_pred ceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 241 EVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 241 ~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
.|.+|+|++++ +|+|||+|.+.++|..|+. |||..|.|+.|+|.+++..
T Consensus 302 ~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 302 NVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 99999999874 4799999999999999998 9999999999999998654
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=7.4e-35 Score=278.05 Aligned_cols=252 Identities=17% Similarity=0.265 Sum_probs=194.8
Q ss_pred CCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc-
Q 022058 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ- 97 (303)
Q Consensus 22 ~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~- 97 (303)
+.+|||+|||+++|+++|+++|++||+|.+|+|+.++.++.++ ||+| .+ .+ +|.+|+. +++
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF-----~~-----~e----~A~~Al~-l~g~ 153 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEF-----YD-----VE----SVIKALA-LTGQ 153 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEE-----CC-----HH----HHHHHHH-hCCC
Confidence 4579999999999999999999999999999999998766554 9999 77 77 8888885 554
Q ss_pred ---CCC-CCCchhh----------hhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEE
Q 022058 98 ---GRK-RLSGRAF----------RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFV 161 (303)
Q Consensus 98 ---g~~-~~~~~~~----------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV 161 (303)
|++ .+..... .........++|||+|||+.+++++|+++|+.||.|..|.++.+..+ ++|||||
T Consensus 154 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 154 MLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred EECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 322 1100000 00001123588999999999999999999999999999999998765 7999999
Q ss_pred EecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCC----------------------------------C-------C
Q 022058 162 EFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPV----------------------------------N-------P 199 (303)
Q Consensus 162 ~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~----------------------------------~-------~ 199 (303)
+|.+.++|.+|+. |||..+.|++|.|.++....... . +
T Consensus 234 ~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (457)
T TIGR01622 234 QFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP 313 (457)
T ss_pred EECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC
Confidence 9999999999998 99999999999999954211000 0 0
Q ss_pred -C------------------CCCC--------------cccc--cccccceEEEcCCCCCCC----------HHHHHHHh
Q 022058 200 -T------------------FLPR--------------SEDE--REMCSRTVYCTNIDKKVP----------QAEVKQFF 234 (303)
Q Consensus 200 -~------------------~~~~--------------~~~~--~~~~~~~l~V~nL~~~~t----------~~~L~~~F 234 (303)
. ..+. .... ......+|+|.||....+ .+||++.|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~ 393 (457)
T TIGR01622 314 GTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEEC 393 (457)
T ss_pred CccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHH
Confidence 0 0000 0000 113457899999955433 36899999
Q ss_pred hhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 235 ~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
++| |.|+.|.|... .+.|++||+|.+.++|.+|++ |||..|+|+.|.+.|....
T Consensus 394 ~k~--G~v~~v~v~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 394 SKY--GGVVHIYVDTK--NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred Hhc--CCeeEEEEeCC--CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999 99999998743 345899999999999999999 9999999999999997544
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=268.86 Aligned_cols=254 Identities=19% Similarity=0.255 Sum_probs=207.2
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcccCCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~ 100 (303)
++||+-+|-++||.|||++|++||.|.+|.|++|+.++.++ ||.| .+ .+ +|.+|++.++.-+.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~-----~t-----rk----~a~~a~~Alhn~kt 101 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKY-----YT-----RK----EADEAINALHNQKT 101 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEe-----cc-----HH----HHHHHHHHhhcccc
Confidence 69999999999999999999999999999999999988766 9999 66 66 77788888776222
Q ss_pred ------CCCchhhhhccCC-CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHH
Q 022058 101 ------RLSGRAFRAQRED-SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAA 172 (303)
Q Consensus 101 ------~~~~~~~~~~~~~-~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~A 172 (303)
.+..+....+++. ...+.||||.|+..++|.+++++|++||.|++|+|++|..+ +||||||.|.+.+.|..|
T Consensus 102 lpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 102 LPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred cCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHH
Confidence 2222222333322 24788999999999999999999999999999999999887 999999999999999999
Q ss_pred HH-hCCc-ccCC--eeEEEeecCCCCCCC---------------------------------------------------
Q 022058 173 LN-LGGT-MLGY--YPVRVLPSKTAILPV--------------------------------------------------- 197 (303)
Q Consensus 173 i~-l~g~-~~~g--~~i~v~~~~~~~~~~--------------------------------------------------- 197 (303)
|+ |||. .+.| .+|.|+|+++.....
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~ 261 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG 261 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc
Confidence 99 9984 4555 899999987643200
Q ss_pred -----CC--------------------------CC--------------C------CCc---------------------
Q 022058 198 -----NP--------------------------TF--------------L------PRS--------------------- 205 (303)
Q Consensus 198 -----~~--------------------------~~--------------~------~~~--------------------- 205 (303)
.+ .. . +.+
T Consensus 262 g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t 341 (510)
T KOG0144|consen 262 GLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGT 341 (510)
T ss_pred cccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCC
Confidence 00 00 0 000
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 022058 206 ---------------------------------------------------------------------------EDERE 210 (303)
Q Consensus 206 ---------------------------------------------------------------------------~~~~~ 210 (303)
.+.+.
T Consensus 342 ~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eG 421 (510)
T KOG0144|consen 342 PANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEG 421 (510)
T ss_pred chhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccC
Confidence 00113
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
+.+..|||++||.+.-+.+|-..|.+| |.|.+.++.-|+ +-+++|+||.|++..+|..||. |||+.+++++|+|.
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pf--G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPF--GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccc--cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 346789999999999999999999999 999999888886 7799999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
......
T Consensus 500 lk~~~~ 505 (510)
T KOG0144|consen 500 LKRDRN 505 (510)
T ss_pred eeeccC
Confidence 875443
No 12
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=266.69 Aligned_cols=253 Identities=22% Similarity=0.286 Sum_probs=198.6
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc--
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~-- 97 (303)
.+|||++|||+++.++|.++|+.+|||..+.++.++.....| ||.| +. .+ |+++|+....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtF-----am-----~E----D~qrA~~e~~~~k 71 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTF-----AM-----EE----DVQRALAETEQSK 71 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceee-----eh-----Hh----HHHHHHHHhhcCc
Confidence 489999999999999999999999999999999998875544 9999 77 77 88888776654
Q ss_pred --CCC-CC---Cchhhhh---------------c-cC-----CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEee
Q 022058 98 --GRK-RL---SGRAFRA---------------Q-RE-----DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150 (303)
Q Consensus 98 --g~~-~~---~~~~~~~---------------~-~~-----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 150 (303)
|+. .+ ..+.... + +. ....-.|.|+||||.+.+.+|+.+|+.||.|.+|.|++
T Consensus 72 f~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~ 151 (678)
T KOG0127|consen 72 FEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPR 151 (678)
T ss_pred ccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEccc
Confidence 222 00 0000000 0 00 01144599999999999999999999999999999998
Q ss_pred CCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCC--------------------------C---
Q 022058 151 DPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVN--------------------------P--- 199 (303)
Q Consensus 151 ~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~--------------------------~--- 199 (303)
...+ -+|||||+|....+|..|++ +|+..|+||+|.|.|+-....... .
T Consensus 152 k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~ 231 (678)
T KOG0127|consen 152 KKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFD 231 (678)
T ss_pred CCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccc
Confidence 7776 57999999999999999999 999999999999999743211000 0
Q ss_pred ----CCCCCc---------------------------c----------------cccccccceEEEcCCCCCCCHHHHHH
Q 022058 200 ----TFLPRS---------------------------E----------------DEREMCSRTVYCTNIDKKVPQAEVKQ 232 (303)
Q Consensus 200 ----~~~~~~---------------------------~----------------~~~~~~~~~l~V~nL~~~~t~~~L~~ 232 (303)
.....+ + +.......+|||+|||+++|+++|.+
T Consensus 232 ~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~ 311 (678)
T KOG0127|consen 232 EEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKE 311 (678)
T ss_pred hhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHH
Confidence 000000 0 00011247899999999999999999
Q ss_pred HhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-h-----CC-ceeCCeeeEEeecCC
Q 022058 233 FFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-C-----SG-MVLGSQPIRVSPSKT 291 (303)
Q Consensus 233 ~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l-----~g-~~~~g~~l~v~~a~~ 291 (303)
+|++| |.|.++.|+.++ +.++|.|||.|.+..+|+.||. . .| ..|+||.|+|..+-+
T Consensus 312 ~fskF--G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 312 HFSKF--GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHhh--ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 99999 999999998885 8899999999999999999997 3 24 678999999998864
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1e-33 Score=273.72 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=188.8
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhcc------------CCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccc
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKL------------NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNN 87 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~------------G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~ 87 (303)
....+|||+|||+++|+++|+++|.+| ++|..+.+..++ .-.||+| .+ .+ +
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~k---g~afVeF-----~~-----~e----~ 235 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEK---NFAFLEF-----RT-----VE----E 235 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCC---CEEEEEe-----CC-----HH----H
Confidence 344579999999999999999999985 345556654432 1229999 87 77 8
Q ss_pred hHHhhhhccc----CCC-CCCchhhhh---------------------------ccCCCCCCEEEEcCCCCCCCHHHHHH
Q 022058 88 NRRRRNNFNQ----GRK-RLSGRAFRA---------------------------QREDSVRRTVYVSDIDQNITEERLAG 135 (303)
Q Consensus 88 A~~a~~~~~~----g~~-~~~~~~~~~---------------------------~~~~~~~~~l~V~nlp~~~t~~~l~~ 135 (303)
|..|+ .|++ |.. .+..+.... .......++|||+|||+.+++++|++
T Consensus 236 A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 236 ATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred Hhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 88888 4665 322 111110000 00112357899999999999999999
Q ss_pred HhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCC----CC-----
Q 022058 136 LFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTF----LP----- 203 (303)
Q Consensus 136 ~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~----~~----- 203 (303)
+|+.||.|..+.++.+..+ ++|||||+|.+.++|..|+. |||..+.|+.|.|.++........... .+
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLA 394 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccc
Confidence 9999999999999998654 89999999999999999998 999999999999999754321110000 00
Q ss_pred C-----cccccccccceEEEcCCCCC--C--------CHHHHHHHhhhhcCcceeEEEEecCC-----CCcccEEEEEEc
Q 022058 204 R-----SEDEREMCSRTVYCTNIDKK--V--------PQAEVKQFFEAACGGEVTRLRLLGDH-----VHSTRIAFVEFA 263 (303)
Q Consensus 204 ~-----~~~~~~~~~~~l~V~nL~~~--~--------t~~~L~~~F~~~~~G~i~~v~i~~d~-----~~~~g~afV~f~ 263 (303)
. .......+..+|+|.|+... + ..++|+++|++| |.|.+|.|+++. +...|+|||+|.
T Consensus 395 ~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~--G~v~~v~i~~~~~~~~~~~~~G~~fV~F~ 472 (509)
T TIGR01642 395 KALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY--GPLINIVIPRPNGDRNSTPGVGKVFLEYA 472 (509)
T ss_pred ccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc--CCeeEEEeeccCcCCCcCCCcceEEEEEC
Confidence 0 00011235678999999642 1 136899999999 999999998752 345789999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 264 VAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 264 ~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
+.++|.+|+. |||..|+|+.|.|.|...
T Consensus 473 ~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 473 DVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999998 999999999999999754
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.8e-33 Score=265.17 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=132.9
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcc
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~ 96 (303)
....+|||+||++++|+++|+++|++||+|.+|+|+.|+.++.++ ||+| .+ .+ +|++|+..+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF-----~s-----~e----~A~~Ai~~ln 170 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEY-----EV-----PE----AAQLALEQMN 170 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEe-----Cc-----HH----HHHHHHHhcC
Confidence 344589999999999999999999999999999999998765544 9999 88 88 9999999998
Q ss_pred c----CCC-CCCchhhhh---------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEE
Q 022058 97 Q----GRK-RLSGRAFRA---------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAF 160 (303)
Q Consensus 97 ~----g~~-~~~~~~~~~---------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~f 160 (303)
+ |+. .+..+.... .......++|||+|||+++++++|+++|+.||.|.+|+|++++.+ ++||||
T Consensus 171 G~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGF 250 (612)
T TIGR01645 171 GQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGF 250 (612)
T ss_pred CeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEE
Confidence 7 444 222111110 011123568999999999999999999999999999999998765 799999
Q ss_pred EEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 161 V~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
|+|.+.++|.+||. ||+..++|+.|+|.++.
T Consensus 251 VeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 251 IEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred EEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 99999999999998 99999999999998864
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.3e-32 Score=248.34 Aligned_cols=169 Identities=21% Similarity=0.407 Sum_probs=150.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++|+++|+++|+.||+|.+|+|+.|..+ ++|||||+|.++++|.+||+ ||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3446889999999999999999999999999999999998765 89999999999999999998 99999999999999
Q ss_pred ecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHH
Q 022058 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAE 266 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e 266 (303)
++++... ....++|||+|||..+++++|+++|++| |.|..+.|++|+ ++++|+|||+|.+.+
T Consensus 183 ~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~f--G~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 183 YARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKY--GQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred ccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHhc--CCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 8753211 1123689999999999999999999999 999999999985 788999999999999
Q ss_pred HHHHHHH-hCCceeCC--eeeEEeecCCCCCCC
Q 022058 267 SAILALN-CSGMVLGS--QPIRVSPSKTPVRPR 296 (303)
Q Consensus 267 ~A~~Ai~-l~g~~~~g--~~l~v~~a~~~~~~r 296 (303)
+|.+||+ ||+..+.+ +.|+|.+++...+.+
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 9999999 99998865 799999998765544
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-32 Score=247.55 Aligned_cols=238 Identities=22% Similarity=0.345 Sum_probs=205.1
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc-eeeeecchhhhhhchhhhccccchHHhhhhcccCCC-C
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH-HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-R 101 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~-~ 101 (303)
.|+|+ +++|+..|.++|+++|+|.+|++.+|. +..+. ||.| .+ ++ +|.+|+..+|..-- .
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf-----~~-----~~----da~~A~~~~n~~~~~~ 64 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNF-----QQ-----PA----DAERALDTMNFDVLKG 64 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEec-----CC-----HH----HHHHHHHHcCCcccCC
Confidence 57888 999999999999999999999999999 72233 9999 88 88 99999999998221 3
Q ss_pred CCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCccc
Q 022058 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTML 180 (303)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~ 180 (303)
...+++++++++.. |||.||+++++..+|.++|+.||.|.+|++.++.++++|| ||+|+++++|.+||+ +||..+
T Consensus 65 ~~~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 65 KPIRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred cEEEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 33456777777655 9999999999999999999999999999999999999999 999999999999999 999999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEE
Q 022058 181 GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAF 259 (303)
Q Consensus 181 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~af 259 (303)
.|+.|.|...........+ .. . .......+++.|++...+++.|..+|..+ |.|.++.++++. ++++||+|
T Consensus 141 ~~kki~vg~~~~~~er~~~----~~-~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~--g~i~s~~v~~~~~g~~~~~gf 212 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAP----LG-E-YKKRFTNVYVKNLEEDSTDEELKDLFSAY--GSITSVAVMRDSIGKSKGFGF 212 (369)
T ss_pred CCCeeEEeeccchhhhccc----cc-c-hhhhhhhhheeccccccchHHHHHhhccc--CcceEEEEeecCCCCCCCccc
Confidence 9999999886443211111 11 1 22345779999999999999999999999 999999999985 77999999
Q ss_pred EEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 260 VEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 260 V~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
|.|.++++|..|+. |||..+.+..+-|..+..
T Consensus 213 v~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 213 VNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999999999999 999999999999888754
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=2.9e-31 Score=254.40 Aligned_cols=177 Identities=24% Similarity=0.356 Sum_probs=151.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+.+ ++|||||+|.+.++|++|++ |||..+.||.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 5688999999999999999999999999999999998765 89999999999999999998 99999999999998653
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~ 269 (303)
.... ....... ........++|||+|||+.+++++|+++|+.| |.|.+|+|.+|. ++++|||||+|.+.++|.
T Consensus 186 ~~p~--a~~~~~~-~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F--G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 186 NMPQ--AQPIIDM-VQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccc--ccccccc-ccccccccceEEeecCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 2211 0000000 01112235789999999999999999999999 999999999985 678999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCCCCCC
Q 022058 270 LALN-CSGMVLGSQPIRVSPSKTPVRPR 296 (303)
Q Consensus 270 ~Ai~-l~g~~~~g~~l~v~~a~~~~~~r 296 (303)
+|+. |||..++|+.|+|.++.+++..+
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9998 99999999999999998765544
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.4e-31 Score=243.99 Aligned_cols=253 Identities=20% Similarity=0.313 Sum_probs=209.5
Q ss_pred CcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc----CCC
Q 022058 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK 100 (303)
Q Consensus 25 ~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~----g~~ 100 (303)
|||+||+.++|.++|.++|+.||+|.+|++..+.++..+.||+| .+ ++ .|++|+..+|| ++.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~FV~f-----~~-----e~----~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGYFVQF-----ES-----EE----SAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceeeEEEe-----CC-----HH----HHHHHHHHhcCcccCCCe
Confidence 89999999999999999999999999999999998844449999 88 88 99999999998 333
Q ss_pred CCCchh----h---hhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHH
Q 022058 101 RLSGRA----F---RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAA 172 (303)
Q Consensus 101 ~~~~~~----~---~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~A 172 (303)
....+. . ........-..++|.|++.+++++.|..+|+.+|.|.++.++.+..+ ++||+||.|.++++|..|
T Consensus 145 i~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred eEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHH
Confidence 111111 1 11111123456999999999999999999999999999999998877 899999999999999999
Q ss_pred HH-hCCcccCCeeEEEeecCCCCCCC----CCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEE
Q 022058 173 LN-LGGTMLGYYPVRVLPSKTAILPV----NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL 247 (303)
Q Consensus 173 i~-l~g~~~~g~~i~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i 247 (303)
++ +|+..+++..+.|..+....... .+.......+.......+|||.|++..++.+.|+.+|+.+ |.|.+++|
T Consensus 225 v~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~--GeI~s~kv 302 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSF--GEITSAKV 302 (369)
T ss_pred HHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcc--cceeeEEE
Confidence 99 99999999999999886532110 1111112222234556889999999999999999999999 99999999
Q ss_pred ecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 022058 248 LGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 248 ~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 293 (303)
+.+. |.++|+|||.|.+.++|.+|+. +||..++++.|.|.++....
T Consensus 303 ~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 303 MVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred EeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 9985 8999999999999999999998 99999999999999986433
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.2e-29 Score=234.21 Aligned_cols=163 Identities=24% Similarity=0.443 Sum_probs=146.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
...+|||+|||+++++++|+++|+.||+|.+|+|++++.+ ++|||||+|.+.++|.+||. |||..+.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3678999999999999999999999999999999998754 89999999999999999998 99999999999999975
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~ 269 (303)
+... .....+|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.
T Consensus 82 ~~~~--------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PSSD--------------SIKGANLYVSGLPKTMTQHELESIFSPF--GQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred cccc--------------ccccceEEECCccccCCHHHHHHHHhcc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 3211 1123689999999999999999999999 999999999885 678999999999999999
Q ss_pred HHHH-hCCceeCC--eeeEEeecCCCC
Q 022058 270 LALN-CSGMVLGS--QPIRVSPSKTPV 293 (303)
Q Consensus 270 ~Ai~-l~g~~~~g--~~l~v~~a~~~~ 293 (303)
.|++ |||..+.| ..|.|.++..+.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9998 99999877 678999987664
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=4.5e-29 Score=238.21 Aligned_cols=173 Identities=28% Similarity=0.366 Sum_probs=148.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||+.+++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+||.|+|..+.|++|.|.++..
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence 5778999999999999999999999999999999998764 89999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~ 270 (303)
.......... ..........+|||+|||..+++++|+++|++| |.|..|.|+.+. |+++|||||+|.+.++|.+
T Consensus 168 ~~~~~~~~~~--~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~--G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 168 EKNRAAKAAT--HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF--GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred hhhhhhhccc--ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 3211100000 000011235899999999999999999999999 999999999885 5889999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCC
Q 022058 271 ALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 271 Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
|+. |||..|.|+.|.|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 998 999999999999999763
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=3.5e-29 Score=235.51 Aligned_cols=244 Identities=20% Similarity=0.299 Sum_probs=192.5
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhcccCC--C-
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR--K- 100 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~--~- 100 (303)
-|+|||||..+..++|..+|..||+|..|-+| .++...+|.| .. +. +|+.|...|..-+ .
T Consensus 387 vil~kNlpa~t~~~elt~~F~~fG~i~rvllp---~~G~~aiv~f-----l~-----p~----eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 387 VILVKNLPAGTLSEELTEAFLRFGEIGRVLLP---PGGTGAIVEF-----LN-----PL----EARKAFRKLAYSRFKSA 449 (725)
T ss_pred eeeeccCccccccHHHHHHhhcccccceeecC---cccceeeeee-----cC-----cc----chHHHHHHhchhhhccC
Confidence 58999999999999999999999999999776 2334449999 77 66 8888877765500 0
Q ss_pred ----------CCC--------------c----hhhh---------hccC-------------CCCCCEEEEcCCCCCCCH
Q 022058 101 ----------RLS--------------G----RAFR---------AQRE-------------DSVRRTVYVSDIDQNITE 130 (303)
Q Consensus 101 ----------~~~--------------~----~~~~---------~~~~-------------~~~~~~l~V~nlp~~~t~ 130 (303)
.+. . +... .+.+ ....+.|||.||+++++.
T Consensus 450 plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTL 529 (725)
T ss_pred ccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccch
Confidence 000 0 0000 0000 001223999999999999
Q ss_pred HHHHHHhhcCCceeEEEEeeCCCC-----CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCCCCC
Q 022058 131 ERLAGLFSSCGQVVDCRVCGDPHS-----VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204 (303)
Q Consensus 131 ~~l~~~F~~~G~i~~~~i~~~~~~-----~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~ 204 (303)
++|..+|...|.|.++.|...+.. |.|||||+|.+.++|++|++ |+|+.++|+.|.|..+........ .
T Consensus 530 e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~--g--- 604 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV--G--- 604 (725)
T ss_pred hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc--c---
Confidence 999999999999999988875533 67999999999999999999 999999999999999862211110 0
Q ss_pred cccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCC
Q 022058 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGS 281 (303)
Q Consensus 205 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g 281 (303)
.........+.|.|+|||+..+..+++.+|+.| |.|.+|+|+... +.++|||||.|.++.+|..|+. |.+..|.|
T Consensus 605 K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF--GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 605 KKKSKKKKGTKILVRNIPFEATKREVRKLFTAF--GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred cccccccccceeeeeccchHHHHHHHHHHHhcc--cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec
Confidence 111112236789999999999999999999999 999999999863 4579999999999999999998 99999999
Q ss_pred eeeEEeecCC
Q 022058 282 QPIRVSPSKT 291 (303)
Q Consensus 282 ~~l~v~~a~~ 291 (303)
|+|.+.|++.
T Consensus 683 RrLVLEwA~~ 692 (725)
T KOG0110|consen 683 RRLVLEWAKS 692 (725)
T ss_pred hhhheehhcc
Confidence 9999999975
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=219.51 Aligned_cols=166 Identities=25% Similarity=0.367 Sum_probs=144.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCc-ccCC--eeEEE
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGT-MLGY--YPVRV 187 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~-~~~g--~~i~v 187 (303)
.+.-.+|||.||..++|.|||++|++||.|.+|.|++|+.+ ++|||||.|.+.++|.+|+. ||.+ .+.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34566999999999999999999999999999999999987 89999999999999999998 7654 4544 89999
Q ss_pred eecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHH
Q 022058 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAE 266 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e 266 (303)
++++... ++....++|||+-|+..+||.+++.+|.+| |.|++|.|++|. +.++|||||+|.+.+
T Consensus 112 k~Ad~E~-------------er~~~e~KLFvg~lsK~~te~evr~iFs~f--G~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 112 KYADGER-------------ERIVEERKLFVGMLSKQCTENEVREIFSRF--GHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred cccchhh-------------hccccchhhhhhhccccccHHHHHHHHHhh--CccchhhheecccccccceeEEEEehHH
Confidence 9886432 111234789999999999999999999999 999999999996 899999999999999
Q ss_pred HHHHHHH-hCCc-eeCC--eeeEEeecCCCCC
Q 022058 267 SAILALN-CSGM-VLGS--QPIRVSPSKTPVR 294 (303)
Q Consensus 267 ~A~~Ai~-l~g~-~~~g--~~l~v~~a~~~~~ 294 (303)
.|..||+ |||. .+.| ..|.|+||.+...
T Consensus 177 ~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 177 MAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 9999999 9985 4554 6999999986643
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=7.2e-28 Score=219.85 Aligned_cols=158 Identities=20% Similarity=0.328 Sum_probs=132.5
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcc
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~ 96 (303)
+.+.+|||+|||+++|+++|+++|++||+|++|+|+.|..++.++ ||+| .+ ++ +|++|+..|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF-----~~-----~e----~A~~Ai~~Ln 170 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDF-----GS-----EA----DSQRAIKNLN 170 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEE-----cc-----HH----HHHHHHHHcC
Confidence 345579999999999999999999999999999999998766554 9999 88 88 9999999998
Q ss_pred c----CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHH
Q 022058 97 Q----GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169 (303)
Q Consensus 97 ~----g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A 169 (303)
+ +++ .+.... ........++|||+|||+++|+++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|
T Consensus 171 G~~l~gr~i~V~~a~--p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 171 GITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred CCccCCceeeeeccc--ccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 7 222 222111 1112234678999999999999999999999999999999998754 789999999999999
Q ss_pred HHHHH-hCCcccCC--eeEEEeecCCC
Q 022058 170 RAALN-LGGTMLGY--YPVRVLPSKTA 193 (303)
Q Consensus 170 ~~Ai~-l~g~~~~g--~~i~v~~~~~~ 193 (303)
++||+ ||+..+.+ ++|.|.+++..
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCcc
Confidence 99999 99998875 79999998654
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=3.1e-26 Score=219.55 Aligned_cols=186 Identities=19% Similarity=0.239 Sum_probs=148.8
Q ss_pred chHHhhhhccc-------CCCCCCchhh-hhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-Cce
Q 022058 87 NNRRRRNNFNQ-------GRKRLSGRAF-RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLR 157 (303)
Q Consensus 87 ~A~~a~~~~~~-------g~~~~~~~~~-~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G 157 (303)
+|.+|+.++++ |......++. +....+...++|||+|||+++++++|+++|+.||.|.+|+|++|..+ ++|
T Consensus 21 ~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRG 100 (578)
T TIGR01648 21 AALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRG 100 (578)
T ss_pred HHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccc
Confidence 57778777766 2222222221 22233446789999999999999999999999999999999998554 899
Q ss_pred EEEEEecCHHHHHHHHH-hCCcccC-CeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhh
Q 022058 158 FAFVEFADEHGARAALN-LGGTMLG-YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235 (303)
Q Consensus 158 ~~fV~f~~~~~A~~Ai~-l~g~~~~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~ 235 (303)
||||+|.+.++|++||+ ||+..+. |+.|.|.++. ..++|||+|||..+++++|.++|+
T Consensus 101 faFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~--------------------~~~rLFVgNLP~~~TeeeL~eeFs 160 (578)
T TIGR01648 101 YAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV--------------------DNCRLFVGGIPKNKKREEILEEFS 160 (578)
T ss_pred eEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------------------cCceeEeecCCcchhhHHHHHHhh
Confidence 99999999999999999 9999885 7887777642 237899999999999999999999
Q ss_pred hhcCcceeEEEEecC---CCCcccEEEEEEcCHHHHHHHHH-hC-C-ceeCCeeeEEeecCCCC
Q 022058 236 AACGGEVTRLRLLGD---HVHSTRIAFVEFAVAESAILALN-CS-G-MVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 236 ~~~~G~i~~v~i~~d---~~~~~g~afV~f~~~e~A~~Ai~-l~-g-~~~~g~~l~v~~a~~~~ 293 (303)
+++ ..+..+.+... .++++|||||+|.+.++|..|+. |+ + ..+.|+.|.|.|+.+..
T Consensus 161 kv~-egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 161 KVT-EGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred ccc-CCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 983 24555554432 35789999999999999999997 64 3 46889999999998654
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.5e-27 Score=196.05 Aligned_cols=166 Identities=26% Similarity=0.445 Sum_probs=149.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.+.+++|.|.-||..+|+++||.+|...|+|++|++++|+-+ |.|||||.|-++++|++|+. |||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 345677999999999999999999999999999999999876 89999999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHH
Q 022058 190 SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAES 267 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~ 267 (303)
+++ +.... ....|||.+||...|..+|.++|++| |.|..-+|+.|. |.++|.|||.|...++
T Consensus 118 ARP-----------Ss~~I---k~aNLYvSGlPktMtqkelE~iFs~f--GrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 118 ARP-----------SSDSI---KDANLYVSGLPKTMTQKELEQIFSPF--GRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ccC-----------Chhhh---cccceEEecCCccchHHHHHHHHHHh--hhhhhhhhhhhcccceecceeEEEecchhH
Confidence 853 33332 33789999999999999999999999 999999999886 7899999999999999
Q ss_pred HHHHHH-hCCceeCC--eeeEEeecCCCCC
Q 022058 268 AILALN-CSGMVLGS--QPIRVSPSKTPVR 294 (303)
Q Consensus 268 A~~Ai~-l~g~~~~g--~~l~v~~a~~~~~ 294 (303)
|..||. |||..-.| -.|.|+|++.|..
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 999999 99988765 4899999987753
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=7.2e-26 Score=218.94 Aligned_cols=172 Identities=19% Similarity=0.270 Sum_probs=138.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC------------CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSC------------GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGY 182 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~------------G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g 182 (303)
..++|||||||+.+|+++|+++|..+ +.|..+.+.. .+|||||+|.+.++|..||.|||..+.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al~l~g~~~~g 249 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAMALDSIIYSN 249 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhhcCCCeEeeC
Confidence 57889999999999999999999964 3455555432 4689999999999999999999999999
Q ss_pred eeEEEeecCCCCCCCCC----CC-CC-----C-----cccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEE
Q 022058 183 YPVRVLPSKTAILPVNP----TF-LP-----R-----SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRL 247 (303)
Q Consensus 183 ~~i~v~~~~~~~~~~~~----~~-~~-----~-----~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i 247 (303)
++|.|............ .. .+ . ..........+|||+|||..+++++|+++|+.| |.|..+.|
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~~~~ 327 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF--GDLKAFNL 327 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEE
Confidence 99999865432210000 00 00 0 000112235789999999999999999999999 99999999
Q ss_pred ecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 248 LGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 248 ~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
+.+. |.++|||||+|.+.++|..|+. |||..|+|+.|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9884 7899999999999999999998 9999999999999998543
No 27
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=7.9e-27 Score=186.77 Aligned_cols=165 Identities=25% Similarity=0.348 Sum_probs=146.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
...+||||||+..++++.|+++|-+.|+|.++++++|..+ .+||||++|.++++|+-|++ ||...+-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 5688999999999999999999999999999999999876 69999999999999999999 99999999999999874
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEE-EEecCC--CCcccEEEEEEcCHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL-RLLGDH--VHSTRIAFVEFAVAESA 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v-~i~~d~--~~~~g~afV~f~~~e~A 268 (303)
.-. .....+..|||+||.+.+++..|++.|+.| |.+.+. +|++|+ |.++|+|||.|.+.+.+
T Consensus 88 ~~~-------------~nl~vganlfvgNLd~~vDe~~L~dtFsaf--G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 88 AHQ-------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAF--GVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccc-------------ccccccccccccccCcchhHHHHHHHHHhc--cccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 111 111233789999999999999999999999 988874 788885 68999999999999999
Q ss_pred HHHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 269 ILALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 269 ~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
.+|+. |||..++++++.|+++.....
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999 999999999999999865543
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=199.41 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=146.7
Q ss_pred hhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccC-Ce
Q 022058 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLG-YY 183 (303)
Q Consensus 108 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~-g~ 183 (303)
+....+...+.||||.||.++.|++|.-+|+..|+|.+++|+.|+.+ +||||||+|.+.++|++||+ ||+.+|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 44445567889999999999999999999999999999999999654 89999999999999999999 9999996 99
Q ss_pred eEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC---CCcccEEEE
Q 022058 184 PVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH---VHSTRIAFV 260 (303)
Q Consensus 184 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~~~~g~afV 260 (303)
.|.|.-+. ..+.|||+|+|.++++++|.+.|++.. -.|++|.|..++ .+.+|||||
T Consensus 155 ~igvc~Sv--------------------an~RLFiG~IPK~k~keeIlee~~kVt-eGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 155 LLGVCVSV--------------------ANCRLFIGNIPKTKKKEEILEEMKKVT-EGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred EeEEEEee--------------------ecceeEeccCCccccHHHHHHHHHhhC-CCeeEEEEecCccccccccceEEE
Confidence 99998763 237899999999999999999999983 367888887764 679999999
Q ss_pred EEcCHHHHHHHHH--hCC-ceeCCeeeEEeecCCCCCC
Q 022058 261 EFAVAESAILALN--CSG-MVLGSQPIRVSPSKTPVRP 295 (303)
Q Consensus 261 ~f~~~e~A~~Ai~--l~g-~~~~g~~l~v~~a~~~~~~ 295 (303)
+|.++.+|..|.+ |+| .++-|+.+.|.||.|...+
T Consensus 214 eYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 214 EYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred EeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 9999999999997 555 5789999999999987654
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2e-25 Score=188.84 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=132.9
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
-+||+.|...++-++||+.|.+||+|.+++|++|..+..++ ||.| .. .+ +|+.||..|||
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf-----~~-----k~----dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSF-----PN-----KE----DAENAIQQMNGQWL 129 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEec-----cc-----hH----HHHHHHHHhCCeee
Confidence 38999999999999999999999999999999999977766 9999 77 77 99999999998
Q ss_pred CCC--CCCchhhhhc--------------cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEE
Q 022058 98 GRK--RLSGRAFRAQ--------------REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161 (303)
Q Consensus 98 g~~--~~~~~~~~~~--------------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV 161 (303)
|++ +..|..++.. +....+++||||||+.-+++++||+.|+.||+|.+|++.++. ||+||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFV 205 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFV 205 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEE
Confidence 555 3333222211 123468899999999999999999999999999999999875 79999
Q ss_pred EecCHHHHHHHHH-hCCcccCCeeEEEeecCCCC
Q 022058 162 EFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 162 ~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~ 194 (303)
.|++.|+|.+||. +|+.+|.|..+++.|.+...
T Consensus 206 rF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 206 RFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999998 99999999999999986543
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=188.31 Aligned_cols=182 Identities=23% Similarity=0.381 Sum_probs=152.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcc-cCC--eeEEE
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTM-LGY--YPVRV 187 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~-~~g--~~i~v 187 (303)
..+++.||||.|...-.|+|++.+|..||.|++|.+.+...+ +|||+||.|.+..+|..||. |||.. +-| ..|.|
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 336789999999999999999999999999999999998876 99999999999999999998 99854 444 78899
Q ss_pred eecCCCCC------------------------------------------------------------------------
Q 022058 188 LPSKTAIL------------------------------------------------------------------------ 195 (303)
Q Consensus 188 ~~~~~~~~------------------------------------------------------------------------ 195 (303)
+++++.+.
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 98865432
Q ss_pred --CCCCC-------------------------CCC---C-----------------------------------------
Q 022058 196 --PVNPT-------------------------FLP---R----------------------------------------- 204 (303)
Q Consensus 196 --~~~~~-------------------------~~~---~----------------------------------------- 204 (303)
+..|. +.+ .
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence 00000 000 0
Q ss_pred ---------------------cccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEE
Q 022058 205 ---------------------SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVE 261 (303)
Q Consensus 205 ---------------------~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~ 261 (303)
......+.+++|||..||..+.+.+|.++|-+| |.|++.+|..|. +.||+||||.
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF--GhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF--GHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc--cceeeeeeeehhccccccceeeEe
Confidence 000123457899999999999999999999999 999999999886 7899999999
Q ss_pred EcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 022058 262 FAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRPR 296 (303)
Q Consensus 262 f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~r 296 (303)
|.++.+|+.||+ |||++|+.++|+|.+.+|....|
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 99999999999999998877655
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=198.68 Aligned_cols=176 Identities=22% Similarity=0.260 Sum_probs=148.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
..+|||++||++++.++|.++|+.+|+|..|.++.+.+. ++|||||+|+-.+++++|+. .++..+.||.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 489999999999999999999999999999999998886 79999999999999999998 999999999999998755
Q ss_pred CCCCC-----CCC-----CCCCcc--cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEE
Q 022058 193 AILPV-----NPT-----FLPRSE--DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAF 259 (303)
Q Consensus 193 ~~~~~-----~~~-----~~~~~~--~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~af 259 (303)
...+. .+. ...... .....+-..|.|+|||+.+.+.+|+.+|+.| |.|..|.|++.. |+--||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~--G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF--GKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc--ceEEEEEcccCCCCCccceEE
Confidence 43211 000 000000 0012235789999999999999999999999 999999999875 44449999
Q ss_pred EEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 022058 260 VEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 260 V~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 293 (303)
|+|....+|..|++ +||..|+||.|-|.||-+..
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999 99999999999999997543
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5e-24 Score=186.93 Aligned_cols=250 Identities=17% Similarity=0.255 Sum_probs=192.3
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
.|+|+-+.|+..|+.||..|.+||+|.+|.+..|..+.+.+ ||+| .- +| .|+-|.++||+
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEY-----Ev-----PE----aAqLAlEqMNg~ml 180 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEY-----EV-----PE----AAQLALEQMNGQML 180 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEE-----eC-----cH----HHHHHHHHhccccc
Confidence 58999999999999999999999999999999999755444 9999 88 88 99999999998
Q ss_pred -CCC-CCCchhhhhc---------cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEec
Q 022058 98 -GRK-RLSGRAFRAQ---------REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFA 164 (303)
Q Consensus 98 -g~~-~~~~~~~~~~---------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~ 164 (303)
||. ++..+....+ .+...-..|||..+.++++++||+..|+.||+|.+|.+.+++.+ ++|||||+|.
T Consensus 181 GGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~ 260 (544)
T KOG0124|consen 181 GGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYN 260 (544)
T ss_pred cCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEec
Confidence 443 3332222111 11223456999999999999999999999999999999998865 8999999999
Q ss_pred CHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCC---------------------------------------------C
Q 022058 165 DEHGARAALN-LGGTMLGYYPVRVLPSKTAILPV---------------------------------------------N 198 (303)
Q Consensus 165 ~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~---------------------------------------------~ 198 (303)
+..+...||. ||-..++|..|+|..+-+..... +
T Consensus 261 n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vS 340 (544)
T KOG0124|consen 261 NLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVS 340 (544)
T ss_pred cccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccC
Confidence 9999999998 99999999999998753321100 0
Q ss_pred -------------------------------CCCCCCc--------------------------cc--------------
Q 022058 199 -------------------------------PTFLPRS--------------------------ED-------------- 207 (303)
Q Consensus 199 -------------------------------~~~~~~~--------------------------~~-------------- 207 (303)
++..|.. +.
T Consensus 341 pA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~ 420 (544)
T KOG0124|consen 341 PAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLS 420 (544)
T ss_pred ccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhh
Confidence 0000000 00
Q ss_pred --------------------ccccccceEEEcCC--CCCCC---HHHHHHHhhhhcCcceeEEEEecCCCCc------cc
Q 022058 208 --------------------EREMCSRTVYCTNI--DKKVP---QAEVKQFFEAACGGEVTRLRLLGDHVHS------TR 256 (303)
Q Consensus 208 --------------------~~~~~~~~l~V~nL--~~~~t---~~~L~~~F~~~~~G~i~~v~i~~d~~~~------~g 256 (303)
-+...++.+.++|+ |.+++ +.+|++.|.+| |.|.+|.|...+... --
T Consensus 421 ~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKf--G~V~rViI~nekq~e~edaeiiV 498 (544)
T KOG0124|consen 421 EQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKF--GAVNRVIIYNEKQGEEEDAEIIV 498 (544)
T ss_pred hhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcc--cceeEEEEEecccccccchhhhh
Confidence 01223456778887 44554 46899999999 999999998764211 22
Q ss_pred EEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 257 IAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 257 ~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
-.||+|+...++.+|++ |||+.|+|+++.....
T Consensus 499 KIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 499 KIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred eeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 58999999999999999 9999999999876654
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=185.02 Aligned_cols=147 Identities=26% Similarity=0.434 Sum_probs=135.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAIL 195 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~ 195 (303)
..|||||||..+++++|+.+|++||.|.+|.|+++ ||||+.++...|..||. ||+..|.|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 35899999999999999999999999999999863 89999999999999999 9999999999999987543
Q ss_pred CCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-h
Q 022058 196 PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-C 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l 274 (303)
+....+|+|+|+.+.++.++|+..|++| |.|..|.|++| |+||.|.-.++|..|+. |
T Consensus 75 --------------sk~stkl~vgNis~tctn~ElRa~fe~y--gpviecdivkd------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 75 --------------SKASTKLHVGNISPTCTNQELRAKFEKY--GPVIECDIVKD------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred --------------CCCccccccCCCCccccCHHHhhhhccc--CCceeeeeecc------eeEEEEeeccchHHHHhcc
Confidence 1244789999999999999999999999 99999999987 89999999999999998 9
Q ss_pred CCceeCCeeeEEeecCCCC
Q 022058 275 SGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 275 ~g~~~~g~~l~v~~a~~~~ 293 (303)
||.++.|++++|..+....
T Consensus 133 ~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccccccceeeeeeecccc
Confidence 9999999999999987544
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.4e-24 Score=188.91 Aligned_cols=169 Identities=25% Similarity=0.407 Sum_probs=149.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
.-|.||||.|.+++.|+.||..|..||+|.+|.+.+|+-+ ++||+||+|+-++.|+.|++ |||..++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4678999999999999999999999999999999999976 89999999999999999999 99999999999998532
Q ss_pred CCCCCCCCCCCCCccc------ccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEc
Q 022058 192 TAILPVNPTFLPRSED------EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFA 263 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~------~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~ 263 (303)
..+...+ +.......|||..++++++++||+..|+-| |+|.+|.+.+++ +..+||||++|.
T Consensus 192 ---------NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF--G~I~~C~LAr~pt~~~HkGyGfiEy~ 260 (544)
T KOG0124|consen 192 ---------NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAPTGRGHKGYGFIEYN 260 (544)
T ss_pred ---------CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh--cceeeEEeeccCCCCCccceeeEEec
Confidence 1122111 112345789999999999999999999999 999999999996 578999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 264 VAESAILALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 264 ~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
+..+...|+. ||-+.++|+.|+|..+-+|+.
T Consensus 261 n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 261 NLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred cccchHHHhhhcchhhcccceEecccccCCCc
Confidence 9999999998 999999999999998866543
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=7.3e-24 Score=194.96 Aligned_cols=247 Identities=16% Similarity=0.193 Sum_probs=174.8
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
++|+--|.-..+..+|.++|+.+|+|.+|+++.|+....++ ||+| .. .+ ....|+ .+.|
T Consensus 181 tvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef-----~D-----~~----sVp~ai-aLsGqrl 245 (549)
T KOG0147|consen 181 TVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEF-----CD-----EQ----SVPLAI-ALSGQRL 245 (549)
T ss_pred HHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEE-----ec-----cc----chhhHh-hhcCCcc
Confidence 46777777778899999999999999999999999877776 9999 44 22 122222 2222
Q ss_pred -CCCCCCchhh-----------hhc-cC-CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEE
Q 022058 98 -GRKRLSGRAF-----------RAQ-RE-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFV 161 (303)
Q Consensus 98 -g~~~~~~~~~-----------~~~-~~-~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV 161 (303)
|.+.+..+.. ..+ .. ...-..||||||.+++++++|+.+|+.||.|+.|.++.|..+ ++|||||
T Consensus 246 lg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi 325 (549)
T KOG0147|consen 246 LGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFI 325 (549)
T ss_pred cCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceE
Confidence 3221100000 000 00 001112999999999999999999999999999999999744 8999999
Q ss_pred EecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCC--C----------CCCCCc-----------------------
Q 022058 162 EFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVN--P----------TFLPRS----------------------- 205 (303)
Q Consensus 162 ~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~--~----------~~~~~~----------------------- 205 (303)
+|.+.++|.+|+. |||.++-|+.|+|........... . ...+..
T Consensus 326 ~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~ 405 (549)
T KOG0147|consen 326 TFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTA 405 (549)
T ss_pred EEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchh
Confidence 9999999999998 999999999999976422111000 0 000000
Q ss_pred -----------------------ccccc-------cccceEEEcCC--CCCCC--------HHHHHHHhhhhcCcceeEE
Q 022058 206 -----------------------EDERE-------MCSRTVYCTNI--DKKVP--------QAEVKQFFEAACGGEVTRL 245 (303)
Q Consensus 206 -----------------------~~~~~-------~~~~~l~V~nL--~~~~t--------~~~L~~~F~~~~~G~i~~v 245 (303)
..... .+..++.+.|+ |.+.| .+|+.+.+.+| |.|..|
T Consensus 406 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~--g~v~hi 483 (549)
T KOG0147|consen 406 ISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH--GKVCHI 483 (549)
T ss_pred hhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc--CCeeEE
Confidence 00001 22334555554 22222 37888999999 999999
Q ss_pred EEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 246 RLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 246 ~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
.|.+.. -|+.||.|.+.++|..|+. |||.+|.|+.|+..|-.
T Consensus 484 ~vd~ns---~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 484 FVDKNS---AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred EEccCC---CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 886553 2799999999999999999 99999999999998753
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=3.2e-23 Score=166.14 Aligned_cols=159 Identities=19% Similarity=0.328 Sum_probs=134.7
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCC-Cc--eeeeecchhhhhhchhhhccccchHHhhhhcc
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHT-DH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~-~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~ 96 (303)
|..++|||+||+..+|++-|.+||-+.|||+++++|+|+-+.. .+ |++| .+ .| +|..|++-||
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef-----~~-----ee----dadYAikiln 72 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEF-----RT-----EE----DADYAIKILN 72 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEE-----ec-----hh----hhHHHHHHHH
Confidence 4556899999999999999999999999999999999997653 33 9999 88 88 9999999998
Q ss_pred c----CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEE-EEeeCCCC--CceEEEEEecCHHH
Q 022058 97 Q----GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-RVCGDPHS--VLRFAFVEFADEHG 168 (303)
Q Consensus 97 ~----g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~~~~--~~G~~fV~f~~~~~ 168 (303)
. |++ ++.... ..+........|||+||.+++++..|.++|+.||.+.+. .+++++.+ ++|||||.|.+.+.
T Consensus 73 ~VkLYgrpIrv~kas-~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 73 MVKLYGRPIRVNKAS-AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred HHHhcCceeEEEecc-cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence 7 666 322222 223334456889999999999999999999999998764 77787774 78999999999999
Q ss_pred HHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 169 ARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 169 A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
+.+|+. +||+.+..+++.|.++...
T Consensus 152 sd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 152 SDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHHHHhccchhcCCceEEEEEEec
Confidence 999999 9999999999999997544
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=4.5e-22 Score=170.09 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=124.7
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhcccCCC-CC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-RL 102 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~-~~ 102 (303)
+|||+|||-..++.+|+.||++||+|.+|.|+++.. ||.. ++ .. +|+.+|.+|++-+- .+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYg-----FVHi-----Ed-----kt----aaedairNLhgYtLhg~ 64 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYG-----FVHI-----ED-----KT----AAEDAIRNLHGYTLHGV 64 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecccc-----eEEe-----ec-----cc----ccHHHHhhcccceecce
Confidence 799999999999999999999999999999998865 8888 66 55 88899999998332 22
Q ss_pred CchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
......+......+++|+||||.+.++.++|+..|++||+|.+|.|++ +|+||+|...++|..|+. ||+.++.
T Consensus 65 nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 65 NINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred EEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhcccccccc
Confidence 222333333355678899999999999999999999999999999985 599999999999999998 9999999
Q ss_pred CeeEEEeecCCC
Q 022058 182 YYPVRVLPSKTA 193 (303)
Q Consensus 182 g~~i~v~~~~~~ 193 (303)
|+++.|+.+...
T Consensus 139 gk~m~vq~stsr 150 (346)
T KOG0109|consen 139 GKRMHVQLSTSR 150 (346)
T ss_pred cceeeeeeeccc
Confidence 999999987544
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=9e-21 Score=179.06 Aligned_cols=169 Identities=22% Similarity=0.314 Sum_probs=134.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~ 194 (303)
.+.|+|+|||..+..++|..+|..||+|..+.++ +.+ . -++|+|.+..+|.+|+. |....+...++.+.|+....
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G-~-~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG-T-GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecC--ccc-c-eeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 4669999999999999999999999999999665 321 1 39999999999999999 99999999999988874432
Q ss_pred CCCCCC--------CCC-----------C------ccc-----------ccccccceEEEcCCCCCCCHHHHHHHhhhhc
Q 022058 195 LPVNPT--------FLP-----------R------SED-----------EREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238 (303)
Q Consensus 195 ~~~~~~--------~~~-----------~------~~~-----------~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~ 238 (303)
....|. ..+ . +.+ .......+|||.||++.++.++|..+|...
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~- 539 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ- 539 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc-
Confidence 220000 000 0 000 000011239999999999999999999998
Q ss_pred CcceeEEEEecCC-C----CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 239 GGEVTRLRLLGDH-V----HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 239 ~G~i~~v~i~~d~-~----~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
|.|.++.|...+ + .|+|||||+|.+.++|+.|++ |+|..+.|+.|.|+++.
T Consensus 540 -G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 -GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred -CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999999887654 2 378999999999999999999 99999999999999997
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=4.8e-21 Score=170.54 Aligned_cols=169 Identities=21% Similarity=0.315 Sum_probs=147.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||++|+|+++++.|++.|.+||+|.+|.+++|+.+ ++||+||+|.+.+...+++...-+.|.|+.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6789999999999999999999999999999999999886 89999999999999999998666789999999887643
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~ 270 (303)
..... ........+.|||++||..+++++++++|++| |.|..+.++.|. .+++||+||+|.+.+++.+
T Consensus 85 r~~~~--------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~--g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQT--------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQF--GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccc--------ccccccceeEEEecCcCCCCchHHHhhhhhcc--ceeEeeEEeecccccccccceeeEeccccccce
Confidence 22111 11111245789999999999999999999999 999999999996 5789999999999999999
Q ss_pred HHHhCCceeCCeeeEEeecCCCC
Q 022058 271 ALNCSGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 271 Ai~l~g~~~~g~~l~v~~a~~~~ 293 (303)
++...-+.|.|+.+.|..|.|..
T Consensus 155 v~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 155 VTLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ecccceeeecCceeeEeeccchh
Confidence 99988899999999999987654
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.1e-21 Score=180.61 Aligned_cols=175 Identities=27% Similarity=0.365 Sum_probs=147.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..+++|+-.|+-..++.+|.++|+.+|.|..|+++.|..+ ++|.|||+|.+.+.+..||.|.|+.+.|.+|.|.....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHH
Confidence 4677999999999999999999999999999999999876 89999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCcc-cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC--CCCcccEEEEEEcCHHHHH
Q 022058 193 AILPVNPTFLPRSE-DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d--~~~~~g~afV~f~~~e~A~ 269 (303)
...... ...+... .....+-..|||+||++++++++|+.+|++| |.|..|.+.+| .|.++||||++|.+.++|.
T Consensus 258 eknr~a-~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf--g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 258 EKNRAA-NASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF--GKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred HHHHHH-hccccccccccccchhhhhhcccccCchHHHHhhhccCc--ccceeeeeccccccccccCcceEEEecHHHHH
Confidence 332100 0001101 1111122339999999999999999999999 99999999999 4899999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCC
Q 022058 270 LALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 270 ~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
+|+. |||++|.|+.|+|....-.
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHhccceecCceEEEEEeeee
Confidence 9987 9999999999999876433
No 41
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.84 E-value=2e-19 Score=161.28 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=118.8
Q ss_pred CCcccccchhhhHHHHHHHH-hccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 24 NLETKKSESEFTVQKLVDMF-TKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F-~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
.+||.|+||++.+++|++|| ++.|+|+-|.+.-|..++.+. -|+| .. +| .+++|.+.||.
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEF-----k~-----~E----~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEF-----KD-----PE----NVQKALEKLNKYEV 111 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEe-----eC-----HH----HHHHHHHHhhhccc
Confidence 39999999999999999999 579999999999999988877 9999 77 77 67777666644
Q ss_pred -CCC----------------------------------------------------------CCCchhh---hh------
Q 022058 98 -GRK----------------------------------------------------------RLSGRAF---RA------ 109 (303)
Q Consensus 98 -g~~----------------------------------------------------------~~~~~~~---~~------ 109 (303)
|++ +.+.+.. .+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 110 0000000 00
Q ss_pred ------------cc-----CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHH
Q 022058 110 ------------QR-----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARA 171 (303)
Q Consensus 110 ------------~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~ 171 (303)
.+ .+.....+||+||.+.+....|++.|.-.|.|+.+.+-.|+.+ ++||+.++|.++-+|-.
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHH
Confidence 00 1222445999999999999999999999999999999888877 89999999999999999
Q ss_pred HHH-hCCcccCCeeEEEee
Q 022058 172 ALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 172 Ai~-l~g~~~~g~~i~v~~ 189 (303)
||. ++++-+..++..+..
T Consensus 272 aIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 272 AISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHhhccCCCccccceeec
Confidence 998 887666666666654
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=1.4e-18 Score=154.83 Aligned_cols=249 Identities=21% Similarity=0.247 Sum_probs=170.9
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhh---------------------
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAI--------------------- 82 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~--------------------- 82 (303)
-|-++|||+++||+||..|+.+||.|+.+.+.+.++. .|++| ++ .+
T Consensus 30 V~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQ---Aflem-----~d-----~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 30 VVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQ---AFLEM-----AD-----EESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred eeEeccCCccccHHHHHHhcccccceeeeeeeccchh---hhhhh-----cc-----hhhhhheeecccccCccccCcce
Confidence 4779999999999999999999999999998876652 15555 22 11
Q ss_pred ------------cccc---chHHhhhhccc---CCCCCCchhhhhccCCC--CCCEEEEcCCCCCCCHHHHHHHhhcCCc
Q 022058 83 ------------DNFN---NNRRRRNNFNQ---GRKRLSGRAFRAQREDS--VRRTVYVSDIDQNITEERLAGLFSSCGQ 142 (303)
Q Consensus 83 ------------~~~~---~A~~a~~~~~~---g~~~~~~~~~~~~~~~~--~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 142 (303)
+..+ -++.+...+.. .-...+.........+. .--.++|+|+-+.++-+-|..+|+.||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 0000 01111111111 00011110000011111 1223788999999999999999999999
Q ss_pred eeEEEEeeCCCCCceE-EEEEecCHHHHHHHHH-hCCcccC--CeeEEEeecCCCCC-----------------CCC---
Q 022058 143 VVDCRVCGDPHSVLRF-AFVEFADEHGARAALN-LGGTMLG--YYPVRVLPSKTAIL-----------------PVN--- 198 (303)
Q Consensus 143 i~~~~i~~~~~~~~G~-~fV~f~~~~~A~~Ai~-l~g~~~~--g~~i~v~~~~~~~~-----------------~~~--- 198 (303)
|..|.-..... || |.|+|.+.+.|..|.. |+|+-|- .+.|++.+++-... +.+
T Consensus 177 VlKIiTF~Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 177 VLKIITFTKNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred eEEEEEEeccc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 98875554333 44 9999999999999998 9998873 48888888642211 111
Q ss_pred --------------------CCCCCCc-------ccccccc--cceEEEcCCCC-CCCHHHHHHHhhhhcCcceeEEEEe
Q 022058 199 --------------------PTFLPRS-------EDEREMC--SRTVYCTNIDK-KVPQAEVKQFFEAACGGEVTRLRLL 248 (303)
Q Consensus 199 --------------------~~~~~~~-------~~~~~~~--~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~i~~v~i~ 248 (303)
|...+.. ....+.+ ...|.|.||.+ .+|.+-|.-+|.-| |.|.+|+|+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY--GdVqRVkil 331 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY--GDVQRVKIL 331 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh--cceEEEEee
Confidence 0000000 0000111 36678888876 59999999999999 999999999
Q ss_pred cCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 022058 249 GDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 249 ~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 293 (303)
..++ -.|+|+|.+...|+-|++ |+|..+.|+.|+|.++|-+.
T Consensus 332 ~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 332 YNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 8864 369999999999999999 99999999999999997653
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.1e-18 Score=138.79 Aligned_cols=158 Identities=20% Similarity=0.264 Sum_probs=127.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..+.|||||||.++-+.+|+++|-+||.|..|.+... .+..+||||+|++..+|+.||. -+|..++|+.|+|+++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r-~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR-PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC-CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 5789999999999999999999999999999987532 3356899999999999999999 9999999999999997644
Q ss_pred CCCCCCC--CCC----------CcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEE
Q 022058 194 ILPVNPT--FLP----------RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVE 261 (303)
Q Consensus 194 ~~~~~~~--~~~----------~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~ 261 (303)
-...... +.. ............+.|.+||++-+++||++++.+. |.|....+.+|. ++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea--GdvCfadv~rDg-----~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA--GDVCFADVQRDG-----VGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh--CCeeeeeeeccc-----ceeee
Confidence 2110000 000 0000111123678999999999999999999998 999999999984 89999
Q ss_pred EcCHHHHHHHHH-hCCceeC
Q 022058 262 FAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 262 f~~~e~A~~Ai~-l~g~~~~ 280 (303)
|...|+...|+. |+...+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 999999999997 8766553
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=155.47 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=125.9
Q ss_pred CCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc
Q 022058 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (303)
Q Consensus 21 ~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~ 97 (303)
.+++|||+.|.|++|++.|++.|++||+|.+|.+++|+.+++++ ||+| +. ++ ...+++.....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f-----~~-----~~----~v~~vl~~~~h 70 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTF-----AT-----PE----GVDAVLNARTH 70 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceec-----CC-----Cc----chheeeccccc
Confidence 56799999999999999999999999999999999999988777 9999 54 33 22222222211
Q ss_pred ---CCCCCCchhhhhccCC-----CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHH
Q 022058 98 ---GRKRLSGRAFRAQRED-----SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167 (303)
Q Consensus 98 ---g~~~~~~~~~~~~~~~-----~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~ 167 (303)
|+.....+........ .....|||++||.+++++++++.|.+||.|..+.++.|..+ ++||+||.|.+++
T Consensus 71 ~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 71 KLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred ccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc
Confidence 3331111111111111 12457999999999999999999999999999999999876 7999999999999
Q ss_pred HHHHHHHhCCcccCCeeEEEeecCCCC
Q 022058 168 GARAALNLGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 168 ~A~~Ai~l~g~~~~g~~i~v~~~~~~~ 194 (303)
.+++++....+.|.|+.+.|..+.+..
T Consensus 151 sVdkv~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 151 SVDKVTLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccceecccceeeecCceeeEeeccchh
Confidence 999999988889999999999886543
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=2.5e-17 Score=150.28 Aligned_cols=170 Identities=22% Similarity=0.256 Sum_probs=133.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
......|.+.+|||++|+++|.++|+.++ |+++.+.+......|-|||+|.+.+++++|++.+...+..|-|.|-.+..
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 33456689999999999999999999995 78877777666678999999999999999999999999999999987754
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE-EEEecCC-CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR-LRLLGDH-VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~-v~i~~d~-~~~~g~afV~f~~~e~A~~ 270 (303)
..... .+.+ ...........|.+++||+.||++||.++|+.. --|.. +.++.|+ ++++|-|||+|++.+.|++
T Consensus 86 ~e~d~--~~~~-~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 86 AEADW--VMRP-GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred ccccc--cccC-CCCCCCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 43211 0111 111112355789999999999999999999987 33334 3455564 7899999999999999999
Q ss_pred HHHhCCceeCCeeeEEee
Q 022058 271 ALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 271 Ai~l~g~~~~g~~l~v~~ 288 (303)
|+.-|...|+-+-|.|-.
T Consensus 161 Al~rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFR 178 (510)
T ss_pred HHHHHHHhhccceEEeeh
Confidence 998777777777777653
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=142.51 Aligned_cols=246 Identities=20% Similarity=0.234 Sum_probs=176.2
Q ss_pred CcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc-------
Q 022058 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ------- 97 (303)
Q Consensus 25 ~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~------- 97 (303)
++|.|+-|-+|-+-|..+|++||.|..|.--. +++..-.-|+| .+ ++ .|+.|...++|
T Consensus 153 ~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~FQALvQy-----~d-----~~----sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 153 TIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGFQALVQY-----TD-----AV----SAQAAKLALDGQNIYNGC 217 (492)
T ss_pred EEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccchhhhhhc-----cc-----hh----hHHHHHHhccCCcccCce
Confidence 67999999999999999999999998864422 22222227888 55 55 56666655554
Q ss_pred -------------------CCC-CCCchhhhh---------------------------------------ccCCC--CC
Q 022058 98 -------------------GRK-RLSGRAFRA---------------------------------------QREDS--VR 116 (303)
Q Consensus 98 -------------------g~~-~~~~~~~~~---------------------------------------~~~~~--~~ 116 (303)
.+. ....+.... .+-.. ..
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 000 000000000 00001 13
Q ss_pred CEEEEcCCC-CCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCC
Q 022058 117 RTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 117 ~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~ 194 (303)
..|-|.||. ..+|.+.|..+|.-||+|..|.|+.++. --|.|+|.+...|+-|+. |+|..+.|++|+|.+++-..
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 568888886 5799999999999999999999998765 359999999999999999 99999999999999986543
Q ss_pred CCCCC--------------CCCCCcc-------cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCC
Q 022058 195 LPVNP--------------TFLPRSE-------DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVH 253 (303)
Q Consensus 195 ~~~~~--------------~~~~~~~-------~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~ 253 (303)
..... ...++-. ..--+++.+|.+.|+|.++++++|+.+|... |...+...... +
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~--g~~vkafkff~--k 450 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP--GGQVKAFKFFQ--K 450 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC--CceEEeeeecC--C
Confidence 21110 0000000 0012456789999999999999999999998 76655433221 1
Q ss_pred cccEEEEEEcCHHHHHHHHH-hCCceeCC-eeeEEeecCCC
Q 022058 254 STRIAFVEFAVAESAILALN-CSGMVLGS-QPIRVSPSKTP 292 (303)
Q Consensus 254 ~~g~afV~f~~~e~A~~Ai~-l~g~~~~g-~~l~v~~a~~~ 292 (303)
.+.++++++.+.|+|..|+. |+.+.+++ ..|+|+|++..
T Consensus 451 d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 451 DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 22499999999999999998 99999975 59999999864
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=5.9e-17 Score=134.98 Aligned_cols=170 Identities=25% Similarity=0.370 Sum_probs=137.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 115 VRRTVYVSDIDQNITEERLAG----LFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
...+|||.||+..+..++|+. +|++||.|.+|...+.. ..+|-|||.|.+.+.|..|+. |+|..+-|++++|.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 344999999999999999888 99999999999887543 268999999999999999998 999999999999999
Q ss_pred cCCCCCCC---CCCCCCCc---------------------------------ccccccccceEEEcCCCCCCCHHHHHHH
Q 022058 190 SKTAILPV---NPTFLPRS---------------------------------EDEREMCSRTVYCTNIDKKVPQAEVKQF 233 (303)
Q Consensus 190 ~~~~~~~~---~~~~~~~~---------------------------------~~~~~~~~~~l~V~nL~~~~t~~~L~~~ 233 (303)
+.....-. .+.+..+. ......+...+|+.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 86542100 00000000 0112445678999999999999999999
Q ss_pred hhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC-CeeeEEeecC
Q 022058 234 FEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG-SQPIRVSPSK 290 (303)
Q Consensus 234 F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~-g~~l~v~~a~ 290 (303)
|++| .....++++.... +.|||+|.+...|..|.+ ++|..+. .+.++|.+++
T Consensus 167 f~qf--~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQF--PGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhC--cccceeEeccCCC---ceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999 8899998887642 499999999999999998 9998886 8889998875
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=8.2e-17 Score=146.96 Aligned_cols=246 Identities=17% Similarity=0.172 Sum_probs=173.6
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhc--ccCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNF--NQGR 99 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~--~~g~ 99 (303)
-|.++.|||++|++||.++|+.|+ |.++.+++. +++.+. ||+| .+ .+ +++.|++.- ..|.
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~-----~s-----ee----dv~~AlkkdR~~mg~ 75 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEF-----TS-----EE----DVEKALKKDRESMGH 75 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEe-----ec-----hH----HHHHHHHhhHHHhCC
Confidence 477999999999999999999997 677777664 345555 9999 77 66 666665432 1122
Q ss_pred C----------CCCchhhhhc--cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeE-EEEeeCCCC-CceEEEEEecC
Q 022058 100 K----------RLSGRAFRAQ--REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD-CRVCGDPHS-VLRFAFVEFAD 165 (303)
Q Consensus 100 ~----------~~~~~~~~~~--~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~i~~~~~~-~~G~~fV~f~~ 165 (303)
+ ...+ .++.. ........|.+++||+.||++||.++|+..-.+.. +.++.+... +.|-|||+|++
T Consensus 76 RYIEVf~~~~~e~d~-~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 76 RYIEVFTAGGAEADW-VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFES 154 (510)
T ss_pred ceEEEEccCCccccc-cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecC
Confidence 2 1111 11111 11235667999999999999999999997766655 556666665 78999999999
Q ss_pred HHHHHHHHHhCCcccCCeeEEEeecCCCC-----------CCC-CCCCC-------------------------------
Q 022058 166 EHGARAALNLGGTMLGYYPVRVLPSKTAI-----------LPV-NPTFL------------------------------- 202 (303)
Q Consensus 166 ~~~A~~Ai~l~g~~~~g~~i~v~~~~~~~-----------~~~-~~~~~------------------------------- 202 (303)
.+.|++|+..|...|+-|-|.|..+.... ... .|...
T Consensus 155 qe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~ 234 (510)
T KOG4211|consen 155 QESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYY 234 (510)
T ss_pred HHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcc
Confidence 99999999988889999999987652110 000 00000
Q ss_pred ---------C---------------------Ccccc-----c-ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEE
Q 022058 203 ---------P---------------------RSEDE-----R-EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246 (303)
Q Consensus 203 ---------~---------------------~~~~~-----~-~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~ 246 (303)
. ..... . ......+.-++||+..++.++..+|+.. ....|.
T Consensus 235 g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl---~p~~v~ 311 (510)
T KOG4211|consen 235 GFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL---NPYRVH 311 (510)
T ss_pred ccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC---CceeEE
Confidence 0 00000 0 0112457778999999999999999986 555777
Q ss_pred EecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 247 LLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 247 i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
|--.+ |+.+|-|.|+|.+.++|..|+.-++..+..+-|.+-.-
T Consensus 312 i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln 355 (510)
T KOG4211|consen 312 IEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLN 355 (510)
T ss_pred EEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeeccc
Confidence 76664 88999999999999999999986777777776665543
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.73 E-value=9.4e-17 Score=144.30 Aligned_cols=178 Identities=23% Similarity=0.266 Sum_probs=144.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-cCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..+.+||.|||+++.|++|+++|. ..|+|+.|.++.|..+ ++|||.|+|+++|.+++|++ ||..++.||+|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456799999999999999999997 7799999999999886 89999999999999999999 99999999999998754
Q ss_pred CCCCC-----------------------------------CCCCCCCCccc-----------------------------
Q 022058 192 TAILP-----------------------------------VNPTFLPRSED----------------------------- 207 (303)
Q Consensus 192 ~~~~~-----------------------------------~~~~~~~~~~~----------------------------- 207 (303)
..... ....+.+++.+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 31110 00001111100
Q ss_pred -------ccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCce
Q 022058 208 -------EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMV 278 (303)
Q Consensus 208 -------~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~ 278 (303)
-..+....+||.||...+....|++.|.-. |.|.++.+--|+ |.++|++.++|.++-+|..||. |++.-
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA--Gkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA--GKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccc--eeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 012234578999999999999999999998 999999998886 8999999999999999999998 88877
Q ss_pred eCCeeeEEeecCCCCC
Q 022058 279 LGSQPIRVSPSKTPVR 294 (303)
Q Consensus 279 ~~g~~l~v~~a~~~~~ 294 (303)
+..++..+....-+.+
T Consensus 281 ~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 281 LFDRRMTVRLDRIPDR 296 (608)
T ss_pred Cccccceeeccccccc
Confidence 7788888877654444
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.1e-16 Score=128.79 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++++++|+++|++||.|.+|.++.|..+ ++|||||+|.+.++|++|++ ||+..|.|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 5778999999999999999999999999999999998765 79999999999999999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 54
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.8e-16 Score=127.57 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=74.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
..++|||+|||..+++++|+++|++| |.|.++.|+.|. ++++|||||+|.+.++|+.|++ ||+..|+|+.|+|.+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF--GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35789999999999999999999999 999999999885 6899999999999999999998 999999999999999
Q ss_pred cCCCC
Q 022058 289 SKTPV 293 (303)
Q Consensus 289 a~~~~ 293 (303)
+.+..
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97554
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=3.1e-15 Score=131.24 Aligned_cols=175 Identities=19% Similarity=0.278 Sum_probs=136.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCcee--------EEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVV--------DCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGY 182 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g 182 (303)
+..++.|||.|||.++|-+++.++|+.||.|. .|++.++..+ .+|=|.+.|-..+++..|++ |++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 44577799999999999999999999999874 5788887776 79999999999999999999 99999999
Q ss_pred eeEEEeecCCCCCCC-CCC----------------------CCCCc-ccccccccceEEEcCCC----CCCC-------H
Q 022058 183 YPVRVLPSKTAILPV-NPT----------------------FLPRS-EDEREMCSRTVYCTNID----KKVP-------Q 227 (303)
Q Consensus 183 ~~i~v~~~~~~~~~~-~~~----------------------~~~~~-~~~~~~~~~~l~V~nL~----~~~t-------~ 227 (303)
+.|+|..++-..... .+. +.+.. ...+....++|.++|+= ...+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999875432110 000 11111 11223345788888872 1222 4
Q ss_pred HHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 228 ~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
++|++-+++| |.|.+|.|.-. .+.|.+-|.|.+.++|..||+ |+|++|+||.|+.+.+.-
T Consensus 291 edl~eec~K~--G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEKF--GQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHh--CCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 6788889998 99999988643 345799999999999999999 999999999999987643
No 53
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.5e-16 Score=133.84 Aligned_cols=159 Identities=26% Similarity=0.318 Sum_probs=128.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAIL 195 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~ 195 (303)
..+|||+||+...+.+|..+|..||.|..+.+. .||+||+|++..+|..|+. +|+.++.|-.+.|.|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 358999999999999999999999999998885 3799999999999999998 999999998899999875422
Q ss_pred CCCCCC---C---CCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHH
Q 022058 196 PVNPTF---L---PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 196 ~~~~~~---~---~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~ 269 (303)
....+. . .+...........+.|.|++..+.+++|.++|+++ |.+....+. .+++||+|++.++|.
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~--g~~~~~~~~------~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA--GEVTYVDAR------RNFAFVEFSEQEDAK 147 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc--CCCchhhhh------ccccceeehhhhhhh
Confidence 111111 0 11111112344678899999999999999999999 999655552 238999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeec
Q 022058 270 LALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 270 ~Ai~-l~g~~~~g~~l~v~~a 289 (303)
+|+. |+|..+.++.|++...
T Consensus 148 ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hcchhccchhhcCceeeeccc
Confidence 9999 9999999999999543
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=125.37 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=124.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC---CceEEEEEecCHHHHHHHHH-hCCcccC---Cee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHGARAALN-LGGTMLG---YYP 184 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---~~G~~fV~f~~~~~A~~Ai~-l~g~~~~---g~~ 184 (303)
.+..-++|||.+||.++...+|+.+|..|--.+.+.+.....+ .+.+|||+|.+..+|.+|+. |||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3345789999999999999999999999988888877654332 45799999999999999998 9999996 788
Q ss_pred EEEeecCCCCCC----CCC-----C--------CCCCc------------------------------------------
Q 022058 185 VRVLPSKTAILP----VNP-----T--------FLPRS------------------------------------------ 205 (303)
Q Consensus 185 i~v~~~~~~~~~----~~~-----~--------~~~~~------------------------------------------ 205 (303)
|+++.++..... ..+ . ...+.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 888887543210 000 0 00000
Q ss_pred ----c---------cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHH
Q 022058 206 ----E---------DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272 (303)
Q Consensus 206 ----~---------~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai 272 (303)
. ......+.+|||.||.+.++|++|+++|+.| ......+|....| .+.||+.|+..+.|..||
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~--~gf~~l~~~~~~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY--PGFHILKIRARGG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC--CCceEEEEecCCC--cceEeecHHHHHHHHHHH
Confidence 0 0001124689999999999999999999999 7677666654443 358999999999999999
Q ss_pred H-hCCcee
Q 022058 273 N-CSGMVL 279 (303)
Q Consensus 273 ~-l~g~~~ 279 (303)
. |.|..|
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 8 999876
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.6e-15 Score=128.66 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.+.|+|||-.||.+..+.+|-.+|-.||.|.+.++..|+-+ ||.||||.|.+..+|+.||. |||..|+-++|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 34788999999999999999999999999999999999876 89999999999999999999 9999999999999876
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
+++
T Consensus 363 RPk 365 (371)
T KOG0146|consen 363 RPK 365 (371)
T ss_pred Ccc
Confidence 543
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.8e-15 Score=106.26 Aligned_cols=68 Identities=32% Similarity=0.566 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC-CCceEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 022058 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVR 186 (303)
Q Consensus 119 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~ 186 (303)
|||+|||+++++++|+++|+.||.|..+.+..+.. .++|||||+|.+.++|++|+. +||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999999633 379999999999999999999 999999999885
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3.2e-14 Score=133.06 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=176.0
Q ss_pred CCCcccccchhhhHHHHHHHHhcc-----------CC-cceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHH
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKL-----------NP-LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~-----------G~-v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~ 90 (303)
-.+.|.+++.+++++.+-.+|..- |+ +..|.+-..++ ..|++| .+ .+ +|..
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n---fa~ie~-----~s-----~~----~at~ 238 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN---FAFIEF-----RS-----IS----EATE 238 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc---ceeEEe-----cC-----CC----chhh
Confidence 368999999999999999999875 43 55555543332 117888 55 44 4544
Q ss_pred hhhhc---ccCCC-CCC---------------------chhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeE
Q 022058 91 RRNNF---NQGRK-RLS---------------------GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145 (303)
Q Consensus 91 a~~~~---~~g~~-~~~---------------------~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 145 (303)
+.... -.|.+ .+. ...............+||++||..+++.+++++...||++..
T Consensus 239 ~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~ 318 (500)
T KOG0120|consen 239 AMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA 318 (500)
T ss_pred hhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchh
Confidence 43211 11222 000 000111112224556999999999999999999999999999
Q ss_pred EEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCCC---------CCc-ccccccc
Q 022058 146 CRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFL---------PRS-EDEREMC 212 (303)
Q Consensus 146 ~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~---------~~~-~~~~~~~ 212 (303)
..++.+..+ ++||||.+|.+..-...|+. |||+.++++.|.|..+-........... +.. ......+
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~ 398 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIP 398 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCc
Confidence 999998874 89999999999999999999 9999999999999887433211111011 000 0111233
Q ss_pred cceEEEcCCCC--CC-CH-------HHHHHHhhhhcCcceeEEEEecC-C----CCcccEEEEEEcCHHHHHHHHH-hCC
Q 022058 213 SRTVYCTNIDK--KV-PQ-------AEVKQFFEAACGGEVTRLRLLGD-H----VHSTRIAFVEFAVAESAILALN-CSG 276 (303)
Q Consensus 213 ~~~l~V~nL~~--~~-t~-------~~L~~~F~~~~~G~i~~v~i~~d-~----~~~~g~afV~f~~~e~A~~Ai~-l~g 276 (303)
...|++.|+-. .+ .+ ++++..|..| |.|.+|.|+++ . .-..|..||+|.+.+++++|+. |+|
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~--g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G 476 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF--GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG 476 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc--CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC
Confidence 45566665421 11 11 5677788899 99999999988 3 2357899999999999999999 999
Q ss_pred ceeCCeeeEEeecCCC
Q 022058 277 MVLGSQPIRVSPSKTP 292 (303)
Q Consensus 277 ~~~~g~~l~v~~a~~~ 292 (303)
..|.||.|..+|..+-
T Consensus 477 rKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 477 RKFANRTVVASYYDED 492 (500)
T ss_pred ceeCCcEEEEEecCHH
Confidence 9999999999987543
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=8.2e-15 Score=102.81 Aligned_cols=68 Identities=29% Similarity=0.527 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC-CCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 216 l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d-~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
|||+|||..+++++|+++|++| |.|..+.+..+ .+.++|+|||+|.+.++|.+|+. |||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF--GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT--STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh--hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 99999999996 57889999999999999999999 999999999985
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=8.2e-15 Score=126.45 Aligned_cols=78 Identities=28% Similarity=0.396 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCCCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~~ 194 (303)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|+.||.|||..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCC
Confidence 57899999999999999999999999999999998864 5799999999999999999999999999999999986543
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=6.1e-15 Score=128.50 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..+.|+|.|||+..-+.||+.+|.+||.|.+|.|+.+..+|||||||+|++.++|++|.+ |||..+.||.|.|..+...
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 567899999999999999999999999999999999999999999999999999999998 9999999999999988654
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5.2e-15 Score=112.40 Aligned_cols=77 Identities=32% Similarity=0.453 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
..+++||||||++.++|++|.++|+.+|+|..|.|=.|+.+ ..|||||+|.+.++|..|++ ++|..++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 36899999999999999999999999999999988887765 89999999999999999999 9999999999999985
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=5.3e-14 Score=123.82 Aligned_cols=156 Identities=27% Similarity=0.388 Sum_probs=116.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC--CCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~--~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
.++|||+|||+++++++|+++|..||.|..+.+..+.. .++|||||+|.+.++|..|+. +++..+.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999873 389999999999999999999 999999999999999642
Q ss_pred --CCCCCCC-----CC---CCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCC--CcccEEEE
Q 022058 193 --AILPVNP-----TF---LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFV 260 (303)
Q Consensus 193 --~~~~~~~-----~~---~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~--~~~g~afV 260 (303)
....... .. ..............+++.+++..++..++...|..+ |.+....+..... ......++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 272 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR--GDIVRASLPPSKDGKIPKSRSFV 272 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc--ccceeeeccCCCCCccccccccc
Confidence 1100000 00 001111123345789999999999999999999998 9997777666542 23334444
Q ss_pred EEcCHHHHHHHHH
Q 022058 261 EFAVAESAILALN 273 (303)
Q Consensus 261 ~f~~~e~A~~Ai~ 273 (303)
.+.....+.....
T Consensus 273 ~~~~~~~~~~~~~ 285 (306)
T COG0724 273 GNEASKDALESNS 285 (306)
T ss_pred chhHHHhhhhhhc
Confidence 4444444444443
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.5e-14 Score=121.50 Aligned_cols=79 Identities=28% Similarity=0.365 Sum_probs=75.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
...+|.|.||+.++++++|.++|.+| |.|.+|.|.+|+ |.++|||||+|.+.++|.+||. |||+-++.-.|.|.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f--g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF--GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc--CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 45789999999999999999999999 999999999997 8899999999999999999999 999999999999999
Q ss_pred cCCC
Q 022058 289 SKTP 292 (303)
Q Consensus 289 a~~~ 292 (303)
++|.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9975
No 64
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=1.6e-12 Score=115.21 Aligned_cols=248 Identities=18% Similarity=0.194 Sum_probs=176.7
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHh-----hhh
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR-----RNN 94 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a-----~~~ 94 (303)
+-|--+-|++|-..+++.||.+..+.||+|.-|..+..+.. .-|+| .+ .+ .|+.+ .++
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~---alvef-----ed-----i~----~akn~Vnfaa~n~ 91 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQ---ALVEF-----ED-----IE----GAKNCVNFAADNQ 91 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccce---eeeee-----cc-----cc----chhhheehhccCc
Confidence 44445779999999999999999999999999888764321 17888 54 33 34333 222
Q ss_pred ccc-CCCCC-----CchhhhhccCC-CCCCEEE--EcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecC
Q 022058 95 FNQ-GRKRL-----SGRAFRAQRED-SVRRTVY--VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165 (303)
Q Consensus 95 ~~~-g~~~~-----~~~~~~~~~~~-~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~ 165 (303)
.+. |...+ +..+.....+. ..+..|. |-|--+.+|-+.|..+....|.|..|.|++... -.|.|+|++
T Consensus 92 i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFds 168 (494)
T KOG1456|consen 92 IYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDS 168 (494)
T ss_pred ccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeech
Confidence 222 22211 11111111111 1233343 445557899999999999999999999987632 369999999
Q ss_pred HHHHHHHHH-hCCcccC--CeeEEEeecCCCCC--------------C-----CCCC---CCCCc---------------
Q 022058 166 EHGARAALN-LGGTMLG--YYPVRVLPSKTAIL--------------P-----VNPT---FLPRS--------------- 205 (303)
Q Consensus 166 ~~~A~~Ai~-l~g~~~~--g~~i~v~~~~~~~~--------------~-----~~~~---~~~~~--------------- 205 (303)
.+.|++|.. |||..|- -.+|+|+++++... + .++. +.+..
T Consensus 169 v~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~ 248 (494)
T KOG1456|consen 169 VEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGG 248 (494)
T ss_pred hHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCC
Confidence 999999999 9999883 58999999876422 0 0000 00000
Q ss_pred ------------------------cc-------ccccccceEEEcCCCCC-CCHHHHHHHhhhhcCcceeEEEEecCCCC
Q 022058 206 ------------------------ED-------EREMCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVTRLRLLGDHVH 253 (303)
Q Consensus 206 ------------------------~~-------~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~i~~v~i~~d~~~ 253 (303)
.+ ....++..+-|.+|+.. .+-+.|..+|+.| |.|++|++++.+-
T Consensus 249 h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY--GNV~rvkFmkTk~- 325 (494)
T KOG1456|consen 249 HSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY--GNVERVKFMKTKP- 325 (494)
T ss_pred CCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc--CceeeEEEeeccc-
Confidence 00 11223567889999874 7889999999999 9999999998752
Q ss_pred cccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 254 STRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 254 ~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
|.|+|++.+..+.++|+. ||+..+-|.+|.|.+++..
T Consensus 326 --gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 326 --GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred --ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 489999999999999998 9999999999999998754
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.4e-14 Score=100.08 Aligned_cols=68 Identities=37% Similarity=0.565 Sum_probs=61.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 022058 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVR 186 (303)
Q Consensus 119 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~ 186 (303)
|||+|||+++++++|+++|+.||.|..+.+..++.+ ++|+|||+|.+.++|.+|+. +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999997655 68999999999999999999 888999999874
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.6e-14 Score=119.25 Aligned_cols=81 Identities=28% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
...+..+|.|.|||.++++++|+++|..||.|..+.+.+|+.+ ++|||||+|.+.++|.+||. |||.-+..--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3346788999999999999999999999999999999999987 89999999999999999999 99999999999999
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
|+++
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9875
No 67
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.53 E-value=2.2e-12 Score=114.36 Aligned_cols=245 Identities=17% Similarity=0.156 Sum_probs=179.2
Q ss_pred ccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc---------
Q 022058 27 TKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--------- 97 (303)
Q Consensus 27 ~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--------- 97 (303)
|=|--|.+|.+-|..+.-.+|+|.+|.|.+. +.-...|+| .+ -+ .|++|...|||
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEF-----ds-----v~----~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEF-----DS-----VE----VAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEee-----ch-----hH----HHHHHHhhccccccccccee
Confidence 7788899999999999999999999999764 333339999 66 55 78888888887
Q ss_pred ----------------------------------CCC---CC-----------C---------------------chhhh
Q 022058 98 ----------------------------------GRK---RL-----------S---------------------GRAFR 108 (303)
Q Consensus 98 ----------------------------------g~~---~~-----------~---------------------~~~~~ 108 (303)
|+. +. + .|...
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 000 00 0 00000
Q ss_pred hc---------cCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCC
Q 022058 109 AQ---------REDSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG 177 (303)
Q Consensus 109 ~~---------~~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g 177 (303)
.. ......+.++|-+|.. .++-+.|-.+|..||.|+.|++++.+. |-|.|++.+..+.++|+. ||+
T Consensus 271 ~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 271 GYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred ccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhcc
Confidence 00 0011355699999985 577888999999999999999998664 789999999999999999 999
Q ss_pred cccCCeeEEEeecCCCCCC-C--------CCCCCCCc-----------cc---ccccccceEEEcCCCCCCCHHHHHHHh
Q 022058 178 TMLGYYPVRVLPSKTAILP-V--------NPTFLPRS-----------ED---EREMCSRTVYCTNIDKKVPQAEVKQFF 234 (303)
Q Consensus 178 ~~~~g~~i~v~~~~~~~~~-~--------~~~~~~~~-----------~~---~~~~~~~~l~V~nL~~~~t~~~L~~~F 234 (303)
..+.|.+|.|..++..... . +++|.... .. .-..+++.|...|.|..+||+.|..+|
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred CccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 9999999999988654321 1 11111100 00 013467889999999999999999999
Q ss_pred hhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCe------eeEEeecCC
Q 022058 235 EAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQ------PIRVSPSKT 291 (303)
Q Consensus 235 ~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~------~l~v~~a~~ 291 (303)
.... -...+++|...+......|.++|++.++|..|+. +|...+.+. .|++.|+.+
T Consensus 428 nek~-v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 428 NEKD-VPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred hhcC-CCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 9861 2456778877653223368999999999999998 898888643 566666653
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=5.5e-14 Score=122.63 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=75.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..+.|+|.|+|+...+-||+.+|++| |.|.+|+|+.....|||||||+|.+.+||++|.. |||..+.||+|.|.-+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kf--G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKF--GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhh--CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45889999999999999999999999 9999999999877799999999999999999998 99999999999999886
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
+..
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 554
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=119.36 Aligned_cols=77 Identities=26% Similarity=0.470 Sum_probs=71.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~~ 292 (303)
.++|||+|||+.+++++|+++|+.| |.|.+|.|+++.. ++|||||+|.+.++|..|+.|||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~--G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS--GDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 4799999999999999999999998 9999999998863 568999999999999999999999999999999998643
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.9e-13 Score=116.23 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~~ 194 (303)
...+|||+||++.+|+++|+++|+.||+|.+|.|+++.. .+|||||+|.++++|+.|+.|+|..|.+++|.|.......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcccc
Confidence 357899999999999999999999999999999998854 4689999999999999999999999999999999875443
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=6.6e-14 Score=117.23 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
-++||||+|+|.+..+.|+++|++||+|++..|+.|+.+ |||||||+|.+.++|.+|++=-.-.|+||+-.|..+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 456999999999999999999999999999999999987 89999999999999999999334488999999987643
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=2.4e-13 Score=95.64 Aligned_cols=68 Identities=31% Similarity=0.552 Sum_probs=61.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 216 l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
|||+|||+.+++++|+++|+.+ |.|..+.+..++ +.++|+|||+|.+.++|.+|++ ++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~--g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF--GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS--SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999 999999999875 7789999999999999999999 888999999884
No 73
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=9e-13 Score=106.45 Aligned_cols=142 Identities=14% Similarity=0.147 Sum_probs=104.9
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc-eeeeecchhhhhhchhhhccccchHHhhhhccc-
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH-HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ- 97 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~- 97 (303)
+.+..|+|+|||.++-+.||.+||-+||.|.+|.|..-. +.... ||+| +. +- +|..||..-++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeF-----Ed-----~R----DAeDAiygRdGY 68 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEF-----ED-----PR----DAEDAIYGRDGY 68 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEe-----cC-----cc----chhhhhhccccc
Confidence 456789999999999999999999999999999985433 32333 9999 66 66 78888765543
Q ss_pred --------------CCCCCCchh-----------hhhccCCC---CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEe
Q 022058 98 --------------GRKRLSGRA-----------FRAQREDS---VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149 (303)
Q Consensus 98 --------------g~~~~~~~~-----------~~~~~~~~---~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~ 149 (303)
|+..-..+- ....+.+. ..-.|.|.+||++-++++|+++..+-|.|-...+.
T Consensus 69 dydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~ 148 (241)
T KOG0105|consen 69 DYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ 148 (241)
T ss_pred ccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee
Confidence 111000000 00001111 23349999999999999999999999999777776
Q ss_pred eCCCCCceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 150 GDPHSVLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 150 ~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
+| |++.|+|-..++.+-|+. |..+.+.
T Consensus 149 rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 149 RD-----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cc-----cceeeeeeehhhHHHHHHhhcccccc
Confidence 65 589999999999999998 8776664
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3.7e-13 Score=123.08 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCH--HHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE--HGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~--~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
...+||||||++.+++++|+.+|..||.|.+|.|++.. .||||||+|.+. .++.+||. |||..+.|+.|+|..++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET--GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK--GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc--CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45679999999999999999999999999999999543 499999999987 78999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 53
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=9.4e-13 Score=91.80 Aligned_cols=71 Identities=39% Similarity=0.618 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
+|||+|||..+++++|+++|..||.|..+.+..+...++|+|||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999999998774578999999999999999998 99999999998873
No 76
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=1e-12 Score=111.74 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=70.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
.+.+|||+||++.+|+++|+++|+.+ |.|.+|+|++|. ..+|+|||+|.+.++|..|+.|+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~--G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC--GAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc--CCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45899999999999999999999997 999999999984 45689999999999999999999999999999999864
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.7e-13 Score=107.83 Aligned_cols=76 Identities=32% Similarity=0.427 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..+.||||||+..+++.+|...|..||+|.+|-|...+ .|||||+|++..+|+.|+. |+|..|.|..|.|+.+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 47889999999999999999999999999999998755 4899999999999999998 9999999999999997543
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=1.2e-12 Score=91.18 Aligned_cols=71 Identities=31% Similarity=0.550 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 215 ~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
+|+|+|||..+++++|+++|.+| |.|..+.+..+++.++|+|||+|.+.++|..|+. ++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~--g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF--GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999 9999999998877788999999999999999998 99999999999874
No 79
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.43 E-value=2.6e-12 Score=107.36 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=116.4
Q ss_pred cCCCCCcccccchhhhHHHHHH----HHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhc
Q 022058 20 NKNNNLETKKSESEFTVQKLVD----MFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~ 95 (303)
|-+++|+|.||......++|+. ||++||+|.+|...+...-+.-.||-| .+ .+ .|-.|...+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvF-----k~-----~~----~As~A~r~l 72 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVF-----KE-----TE----AASAALRAL 72 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEe-----cC-----hh----HHHHHHHHh
Confidence 4456999999999999999999 999999999999876544322229999 55 44 555666666
Q ss_pred cc----CCC-----------CCCchh-------------------hhh-------------------ccCCCCCCEEEEc
Q 022058 96 NQ----GRK-----------RLSGRA-------------------FRA-------------------QREDSVRRTVYVS 122 (303)
Q Consensus 96 ~~----g~~-----------~~~~~~-------------------~~~-------------------~~~~~~~~~l~V~ 122 (303)
+| |++ .+..+. ... .........+|+.
T Consensus 73 ~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ 152 (221)
T KOG4206|consen 73 QGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLT 152 (221)
T ss_pred cCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEe
Confidence 66 322 000000 000 0011245669999
Q ss_pred CCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEeecC
Q 022058 123 DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG-YYPVRVLPSK 191 (303)
Q Consensus 123 nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~-g~~i~v~~~~ 191 (303)
|||.+++.+.|..+|.+|.-...++++... .+.|||+|.+...|..|.. +.+..+. ...|.|.+++
T Consensus 153 niP~es~~e~l~~lf~qf~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 153 NIPSESESEMLSDLFEQFPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cCCcchhHHHHHHHHhhCcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999999999998654 3799999999999999998 9988887 7888887753
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=8.3e-13 Score=120.80 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=72.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCH--HHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA--ESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~--e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
....+|||+||++.+++++|+..|.+| |.|.+|.|++..| +|||||+|.+. .++.+||. |||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF--GsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM--GTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345789999999999999999999999 9999999998777 89999999987 67899998 99999999999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
.|+|..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998753
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=9.6e-13 Score=110.30 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=73.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
..++|||++|+..+..+.|+++|++| |+|+.+.|+.|+ |+|+|||||+|.+.++|.+|.+--+..|+||+-.|.+|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf--GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF--GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh--CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34789999999999999999999999 999999999996 89999999999999999999985567899999998887
Q ss_pred CCCCCCC
Q 022058 290 KTPVRPR 296 (303)
Q Consensus 290 ~~~~~~r 296 (303)
-.--++|
T Consensus 89 ~lg~~pR 95 (247)
T KOG0149|consen 89 SLGGKPR 95 (247)
T ss_pred hhcCccC
Confidence 5433333
No 82
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=9.4e-12 Score=114.90 Aligned_cols=173 Identities=19% Similarity=0.257 Sum_probs=119.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-----Cce---EEEEEecCHHHHHHHHH-hCCcccCCe
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-----VLR---FAFVEFADEHGARAALN-LGGTMLGYY 183 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-----~~G---~~fV~f~~~~~A~~Ai~-l~g~~~~g~ 183 (303)
+..++.||||+||++++|+.|...|..||.+. +.++...+. .+| |+|+.|+++.++..-+. +.- .-...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 34577899999999999999999999999864 566532221 466 99999999999988885 321 11112
Q ss_pred eEEEeecCCCCCCC-CCCCCCC------cccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCc
Q 022058 184 PVRVLPSKTAILPV-NPTFLPR------SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHS 254 (303)
Q Consensus 184 ~i~v~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~ 254 (303)
.+.|.......... -.+|... .....-.+.+||||++||-.++.++|-.+|+..+ |.|..+-|-.|+ +.+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ly-GgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLF-GGVLYVGIDTDPKLKYP 412 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhc-CceEEEEeccCcccCCC
Confidence 22222211111000 0001000 1112233569999999999999999999999544 999999999995 679
Q ss_pred ccEEEEEEcCHHHHHHHHH-----hCCceeCCeeeEEeec
Q 022058 255 TRIAFVEFAVAESAILALN-----CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 255 ~g~afV~f~~~e~A~~Ai~-----l~g~~~~g~~l~v~~a 289 (303)
+|-|=|+|.+..+-.+||. |+...+. ++|.|++.
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPY 451 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPY 451 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEeccccc-eeeeecce
Confidence 9999999999999999996 2333333 46676654
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.1e-14 Score=112.86 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
++.-|||||||+.+||.||--.|++||+|..|.+++|..+ |+||||+.|++..+...|+. |||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 5778999999999999999999999999999999999987 89999999999999999998 99999999999999864
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 84
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=1.8e-12 Score=115.29 Aligned_cols=253 Identities=17% Similarity=0.154 Sum_probs=161.0
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcccCCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~ 100 (303)
-+..+.|||-.++.++-.+|.-.--..--+.+.....+.+. -|.| .+ +|... -|.+.-+.+.+++.
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf-----~d-----~e~Rd-lalkRhkhh~g~ry 130 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRF-----VD-----PEGRD-LALKRHKHHMGTRY 130 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEe-----cC-----chhhh-hhhHhhhhhccCCc
Confidence 37789999999999999999754322222222222222211 7777 55 33111 23333333333222
Q ss_pred ----------CCCchhhhhcc-CC----CCCCEEEEcCCCCCCCHHHHHHHhhc---C-CceeEEEEeeCCCC-CceEEE
Q 022058 101 ----------RLSGRAFRAQR-ED----SVRRTVYVSDIDQNITEERLAGLFSS---C-GQVVDCRVCGDPHS-VLRFAF 160 (303)
Q Consensus 101 ----------~~~~~~~~~~~-~~----~~~~~l~V~nlp~~~t~~~l~~~F~~---~-G~i~~~~i~~~~~~-~~G~~f 160 (303)
.+......+.. .+ ...--|..++||+++++.++.++|.. . |..+.+-+++.+++ ..|-||
T Consensus 131 ievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAF 210 (508)
T KOG1365|consen 131 IEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAF 210 (508)
T ss_pred eeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceE
Confidence 00000000000 00 11233778999999999999999952 2 35567777776555 789999
Q ss_pred EEecCHHHHHHHHHhCCcccCCeeEEEeecCCCCC----------CCCC----CCC---CCcccccccccceEEEcCCCC
Q 022058 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL----------PVNP----TFL---PRSEDEREMCSRTVYCTNIDK 223 (303)
Q Consensus 161 V~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~~~----------~~~~----~~~---~~~~~~~~~~~~~l~V~nL~~ 223 (303)
|.|..+++|+.|+.-|...++-|.|.+..+..... +..+ ... +...-.......+|.+++||+
T Consensus 211 vlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 211 VLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred EEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 99999999999999888888888887766533210 1110 011 111112222357899999999
Q ss_pred CCCHHHHHHHhhhhcCcceeE--EEEecC-CCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 224 KVPQAEVKQFFEAACGGEVTR--LRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 224 ~~t~~~L~~~F~~~~~G~i~~--v~i~~d-~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
..+.++|.++|..|. -.|.. |.++.. +|++.|-|||+|.+.|+|..|.+ .+.+...+|.|.|-.
T Consensus 291 ~AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 291 EATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred hhhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 999999999999983 23433 655544 68999999999999999999887 666666677777654
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=9.4e-13 Score=108.11 Aligned_cols=77 Identities=26% Similarity=0.389 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
.-.+|.|-||.+-++.++|+.+|++||.|-+|.|+.|..+ ++|||||.|....+|+.|++ |+|..++|+.|.|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 5677999999999999999999999999999999999987 89999999999999999999 99999999999998764
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=3.4e-12 Score=93.61 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
++...+-|||.|||+++|.++..++|..||.|..|+|=..+. .+|-|||.|++..+|.+|+. |+|.-+.++.+.|.+.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 344678899999999999999999999999999999965544 48999999999999999999 9999999999999886
Q ss_pred C
Q 022058 191 K 191 (303)
Q Consensus 191 ~ 191 (303)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 4
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=99.75 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=73.8
Q ss_pred cccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 209 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
++..+..|||.++.+..++++|.+.|..| |.|..+.+-.|. |-.+|||+|+|.+.++|++|+. |||..|.|+.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dy--GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADY--GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhc--ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34567899999999999999999999999 999999998885 7889999999999999999998 999999999999
Q ss_pred Eeec
Q 022058 286 VSPS 289 (303)
Q Consensus 286 v~~a 289 (303)
|.|+
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 9986
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=8.1e-12 Score=87.48 Aligned_cols=72 Identities=43% Similarity=0.647 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
+|+|+|||+.+++++|+++|+.+|.|..+.+..++.+ ++|+|||+|.+.++|..|+. +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987765 68999999999999999999 999999999998864
No 89
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.3e-12 Score=103.28 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
.+.|||+||+..+++.+|..+|..| |.|..|.|...+ -|||||+|+++.+|..|+. |||..|.|.+|.|.+++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y--G~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY--GPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc--CcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4789999999999999999999999 999999998864 3699999999999999998 999999999999999865
Q ss_pred CC
Q 022058 292 PV 293 (303)
Q Consensus 292 ~~ 293 (303)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=4.7e-12 Score=92.89 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=70.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
.+.|||+|||+++|.++..++|.+| |.|.+++|-..++ .+|.|||.|++..+|.+|+. |+|+.+.++.|.|.+..+
T Consensus 18 nriLyirNLp~~ITseemydlFGky--g~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKY--GTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcc--cceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 4789999999999999999999999 9999999977653 56899999999999999998 999999999999999875
Q ss_pred C
Q 022058 292 P 292 (303)
Q Consensus 292 ~ 292 (303)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=5.2e-12 Score=87.62 Aligned_cols=68 Identities=38% Similarity=0.594 Sum_probs=62.5
Q ss_pred EcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 121 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
|+|||..+++++|+++|+.||.|..+.+..++.+ ++|+|||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999999987643 78999999999999999998 99999999998873
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.5e-13 Score=109.99 Aligned_cols=79 Identities=25% Similarity=0.351 Sum_probs=75.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
-++|||++|...+++.-|...|=+| |.|.+|.++.|. ++.+|||||+|...|+|.+||. ||+.+|.||.|+|.++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPF--GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPF--GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccc--cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3799999999999999999999999 999999999995 6899999999999999999998 9999999999999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
+|+.
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 9864
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-12 Score=108.37 Aligned_cols=82 Identities=29% Similarity=0.410 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
..+++||||+|..++++.-|...|-+||.|.+|.++.|-.+ ++|||||+|.-.++|.+||. ||+.++-||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 46889999999999999999999999999999999998765 89999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 022058 191 KTAIL 195 (303)
Q Consensus 191 ~~~~~ 195 (303)
++...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 77643
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=5.5e-12 Score=108.95 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
..-+||||+-|+++++|..|+..|+.||+|..|.|+.|..+ ++|||||+|+++.+...|.+ .+|..|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45789999999999999999999999999999999999776 89999999999999999999 9999999999999875
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 95
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=9.1e-12 Score=86.36 Aligned_cols=68 Identities=32% Similarity=0.538 Sum_probs=63.0
Q ss_pred EcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 218 CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 218 V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
|+|||..+++++|+++|++| |.|..+.+..++ +.++|+|||+|.+.++|..|+. |++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF--GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh--CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999 999999999874 6789999999999999999998 99999999999874
No 96
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3e-13 Score=108.90 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=71.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
+.-|||+|||+.+||.||...|++| |.|++|.+++|+ |+|+||||+.|.+..+..-|+. |||..|.||.|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqy--Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQY--GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeecc--CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3679999999999999999999999 999999999996 8999999999999999999997 9999999999999875
Q ss_pred C
Q 022058 290 K 290 (303)
Q Consensus 290 ~ 290 (303)
-
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=2.2e-11 Score=85.27 Aligned_cols=72 Identities=33% Similarity=0.572 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 215 ~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+|+|+|||..+++++|+++|+.+ |.|..+.+..+. +.++|+|||+|.+.++|..|++ +++..+.|+.++|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~--g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF--GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc--CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999 999999999875 4678999999999999999998 999999999999875
No 98
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.31 E-value=5e-12 Score=103.88 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=72.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.-.+|.|-||-+.++.++|+.+|++| |.|-+|.|++|. +.++|||||.|....+|+.|+. |+|..|+|+.|.|.+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekY--G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKY--GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHh--CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34789999999999999999999999 999999999996 6799999999999999999999 999999999999988
Q ss_pred cC
Q 022058 289 SK 290 (303)
Q Consensus 289 a~ 290 (303)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 75
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=6.1e-12 Score=96.63 Aligned_cols=75 Identities=25% Similarity=0.348 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
-|||.++....++++|.+.|..||+|..+.+-.|..+ .+||++|+|++.++|++|+. +||..+.|..|.|.|.-.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 3999999999999999999999999999999999887 79999999999999999998 999999999999999743
No 100
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=7.8e-12 Score=95.25 Aligned_cols=78 Identities=28% Similarity=0.422 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
..+.+|||+||++.++|++|+++|+. | |+|..|.+-.|. .++=|||||+|-+.++|..|+. ++|..++.+.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-c-G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-C-GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-c-cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 35689999999999999999999999 5 999999887775 4678999999999999999999 99999999999999
Q ss_pred ecC
Q 022058 288 PSK 290 (303)
Q Consensus 288 ~a~ 290 (303)
|.-
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 863
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.9e-12 Score=106.62 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=110.6
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc----CC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GR 99 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~----g~ 99 (303)
.++|++|||...+.+|..+|..||.|-+|.+..... ||+| .. .. +|..|+..+++ |.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~-----fv~f-----ed-----~r----da~Dav~~l~~~~l~~e 63 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFG-----FVEF-----ED-----PR----DADDAVHDLDGKELCGE 63 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecccc-----eecc-----Cc-----hh----hhhcccchhcCceecce
Confidence 589999999999999999999999999999976543 7888 55 55 78888888776 11
Q ss_pred C----------------CCCchhh-hh--ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEE
Q 022058 100 K----------------RLSGRAF-RA--QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160 (303)
Q Consensus 100 ~----------------~~~~~~~-~~--~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~f 160 (303)
. .-..+.. .. .......+.+.|.+++..+.+++|.+.|..+|.+....+ ..+++|
T Consensus 64 ~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~ 137 (216)
T KOG0106|consen 64 RLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAF 137 (216)
T ss_pred eeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccc
Confidence 1 0000001 11 112235677999999999999999999999999855444 346999
Q ss_pred EEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 161 VEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 161 V~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
|+|++.++|.+|+. +++..+.++.|.+..
T Consensus 138 v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 138 VEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eeehhhhhhhhcchhccchhhcCceeeecc
Confidence 99999999999998 999999999999943
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=2.5e-11 Score=81.55 Aligned_cols=55 Identities=31% Similarity=0.555 Sum_probs=50.4
Q ss_pred HHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 230 VKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 230 L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
|+++|++| |.|.++.+.+.. +++|||+|.+.++|..|+. |||..+.|++|+|.||
T Consensus 1 L~~~f~~f--G~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF--GEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT--S-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc--ccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999 999999998876 4699999999999999998 9999999999999986
No 103
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.4e-11 Score=105.02 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=73.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
.+-+||||.-|+..++|+.|+..|+.| |.|..+.|+.|. |+++|||||+|++.-+...|.+ .+|..|+|+.|.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~Y--G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKY--GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhc--CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 456899999999999999999999999 999999999996 8999999999999999999998 99999999999999
Q ss_pred ecC
Q 022058 288 PSK 290 (303)
Q Consensus 288 ~a~ 290 (303)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 864
No 104
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.3e-12 Score=126.43 Aligned_cols=224 Identities=17% Similarity=0.107 Sum_probs=162.6
Q ss_pred CCcccccchhhhHH-HHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc--
Q 022058 24 NLETKKSESEFTVQ-KLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~-~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~-- 97 (303)
.+.+.|+.+..... .++.-|..+|.|..|+++......+.. ++.+ .. .. .++.+. ...+
T Consensus 573 e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~-----s~-----~~----~~esat-~pa~~~ 637 (881)
T KOG0128|consen 573 EKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQ-----SK-----HG----SAESAT-VPAGGA 637 (881)
T ss_pred hhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhh-----cc-----cc----chhhcc-cccccc
Confidence 45566777766666 578899999999999999843322222 6666 22 11 222211 1111
Q ss_pred --CCC---CCCchhhhhcc------CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEee--CCCCCceEEEEEec
Q 022058 98 --GRK---RLSGRAFRAQR------EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG--DPHSVLRFAFVEFA 164 (303)
Q Consensus 98 --g~~---~~~~~~~~~~~------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~--~~~~~~G~~fV~f~ 164 (303)
++. ....+...... +.....++||.||++.+.+.+|...|..+|.+..+++.- +....+|+||+.|.
T Consensus 638 ~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~ 717 (881)
T KOG0128|consen 638 LANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFL 717 (881)
T ss_pred cCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEee
Confidence 111 11111111110 011234599999999999999999999999988887762 33337899999999
Q ss_pred CHHHHHHHHHhCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE
Q 022058 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR 244 (303)
Q Consensus 165 ~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~ 244 (303)
..+++.+|+.++...+.| -..++|.|+|+..|.+.|+.++..+ |.+.+
T Consensus 718 ~~~~~~aaV~f~d~~~~g------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~--gn~~~ 765 (881)
T KOG0128|consen 718 KPEHAGAAVAFRDSCFFG------------------------------KISVAISGPPFQGTKEELKSLASKT--GNVTS 765 (881)
T ss_pred cCCchhhhhhhhhhhhhh------------------------------hhhhheeCCCCCCchHHHHhhcccc--CCccc
Confidence 999999999944333333 1468999999999999999999999 99999
Q ss_pred EEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 245 LRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 245 v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
..++... |+++|.++|.|.+..++.++.. +++..+..+.+.|..++|+..
T Consensus 766 ~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 766 LRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred cchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 9988775 8999999999999999999997 888888888888888777443
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.6e-11 Score=81.49 Aligned_cols=55 Identities=35% Similarity=0.501 Sum_probs=50.1
Q ss_pred HHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 133 LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 133 l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
|+++|++||+|.++.+..+. +|+|||+|.+.++|..|+. |||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998765 5899999999999999998 9999999999999985
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.26 E-value=1.4e-11 Score=114.69 Aligned_cols=77 Identities=31% Similarity=0.459 Sum_probs=73.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
+.|||||||+++++++|.++|+..|.|.+++++.|+.+ ++||||++|.+.++|..|++ |||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999886 79999999999999999999 9999999999999997543
No 107
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=5.4e-11 Score=104.55 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=73.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..+|||+|||..+++++|.++|.+| |.|..+.+..|. +.++|+|||+|.+.++|..|+. |+|..|.|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~--g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF--GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc--CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 5899999999999999999999999 999999999985 8999999999999999999999 9999999999999997
Q ss_pred CC
Q 022058 290 KT 291 (303)
Q Consensus 290 ~~ 291 (303)
.+
T Consensus 193 ~~ 194 (306)
T COG0724 193 QP 194 (306)
T ss_pred cc
Confidence 64
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=6.3e-11 Score=83.44 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=51.9
Q ss_pred HHHHHHHhh----hhcCcceeEEE-EecCC----CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 227 QAEVKQFFE----AACGGEVTRLR-LLGDH----VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 227 ~~~L~~~F~----~~~~G~i~~v~-i~~d~----~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
+++|+++|+ .| |.|.++. |..++ ++++|+|||+|.+.++|.+|+. |||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~f--G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF--GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc--CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 99 9999985 55543 7789999999999999999998 99999999999863
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=9.8e-11 Score=82.46 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=51.3
Q ss_pred HHHHHHHhh----cCCceeEEE-EeeCC----CCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 022058 130 EERLAGLFS----SCGQVVDCR-VCGDP----HSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187 (303)
Q Consensus 130 ~~~l~~~F~----~~G~i~~~~-i~~~~----~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v 187 (303)
+++|+++|+ .||.|.++. ++.++ ..++|||||+|.+.++|.+|+. |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 65554 3379999999999999999999 9999999999986
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=5.5e-11 Score=110.84 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=73.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..+||+|+|+++++++|..+|+.. |.|.+++++.|. |+++||||++|.+.++|..|+. |||.++.|+.|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~--g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV--GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc--CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 789999999999999999999998 999999999995 8999999999999999999998 99999999999999986
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 443
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=109.56 Aligned_cols=170 Identities=22% Similarity=0.350 Sum_probs=133.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcC-----------C-ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCe
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSC-----------G-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~-----------G-~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~ 183 (303)
.+.++|+++|+.++++.+-.+|..- | .+..+.+-.. +.|+|++|.+.++|..|+.+++..+.|+
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~----~nfa~ie~~s~~~at~~~~~~~~~f~g~ 250 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE----KNFAFIEFRSISEATEAMALDGIIFEGR 250 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc----ccceeEEecCCCchhhhhcccchhhCCC
Confidence 5569999999999999998888732 2 3566666443 4599999999999999999999999999
Q ss_pred eEEEeecCCCCCCCC----CC----CCCCcc-cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--C
Q 022058 184 PVRVLPSKTAILPVN----PT----FLPRSE-DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--V 252 (303)
Q Consensus 184 ~i~v~~~~~~~~~~~----~~----~~~~~~-~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~ 252 (303)
++.+........... +. +..... .........+||++||..++++++.++.+.| |.+..-.++.|. |
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f--g~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF--GPLKAFRLVKDSATG 328 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc--ccchhheeecccccc
Confidence 998876433322111 00 000000 0112234679999999999999999999999 999998888885 6
Q ss_pred CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 253 HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 253 ~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
.++||||.+|-++.....|+. |||..++++.|.|..|-+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 899999999999999999998 999999999999998754
No 112
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.06 E-value=3.5e-09 Score=93.52 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=105.2
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcce--------eeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhh
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAK--------EFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRN 93 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~ 93 (303)
.|+|.|||-++|.+++.++|++||-|.+ |+|-++..++..+ -+.| .. .+ ...-|+.
T Consensus 136 ~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y-----~K-----~E----SVeLA~~ 201 (382)
T KOG1548|consen 136 SVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCY-----IK-----RE----SVELAIK 201 (382)
T ss_pred eEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEe-----ec-----cc----HHHHHHH
Confidence 5999999999999999999999998854 6888888877766 5555 22 22 2223433
Q ss_pred hccc------------------------CCCC----------------CCchhhh-hccCCCCCCEEEEcCCC----CCC
Q 022058 94 NFNQ------------------------GRKR----------------LSGRAFR-AQREDSVRRTVYVSDID----QNI 128 (303)
Q Consensus 94 ~~~~------------------------g~~~----------------~~~~~~~-~~~~~~~~~~l~V~nlp----~~~ 128 (303)
.|++ ++.. +.++... ........++|.+.|+- ...
T Consensus 202 ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~ 281 (382)
T KOG1548|consen 202 ILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEK 281 (382)
T ss_pred HhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhcc
Confidence 3332 1110 0011111 00112246789999984 223
Q ss_pred C-------HHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 129 T-------EERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 129 t-------~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+ .++|++-.+.||.|.+|.|.- +.+.|.+-|.|.+.++|..||+ |+|..+.||.|......
T Consensus 282 ~~~l~~dlkedl~eec~K~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 282 NPDLLNDLKEDLTEECEKFGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 3 334556678999999998863 2357999999999999999999 99999999999987754
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=1.4e-10 Score=113.01 Aligned_cols=160 Identities=17% Similarity=0.293 Sum_probs=134.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC-CCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
..++||+|||+..+++.+|+..|..+|.|.+|.|-+... +-.-|+||.|.+.+.+..|.. +.+..|....+++.+...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 577899999999999999999999999999999976533 345699999999999999997 888887655555554321
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai 272 (303)
.....+.+++++|+..+....|.+.|..| |.|..|.+-... -|++|+|.+...|+.|+
T Consensus 451 ----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f--Gpir~Idy~hgq----~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 451 ----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF--GPIRIIDYRHGQ----PYAYIQYESPPAAQAAT 508 (975)
T ss_pred ----------------ccccceeeccCCCCCCChHHHHHHHhhcc--CcceeeecccCC----cceeeecccCccchhhH
Confidence 22345789999999999999999999999 999998775543 39999999999999999
Q ss_pred H-hCCceeCC--eeeEEeecCCCCCCC
Q 022058 273 N-CSGMVLGS--QPIRVSPSKTPVRPR 296 (303)
Q Consensus 273 ~-l~g~~~~g--~~l~v~~a~~~~~~r 296 (303)
. |-|..|+| ++|.|.|+.++.+..
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCCh
Confidence 8 99999975 789999998876544
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.04 E-value=2.1e-10 Score=97.29 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=125.1
Q ss_pred EEEEcCCCCCCCHHH-H--HHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 118 TVYVSDIDQNITEER-L--AGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~-l--~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
..+++++-..+..+- | ...|+.+-......++.+..+ -++++|+.|.....-.++-. -+++.++-++|+..-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 356666655554443 3 677887777777777776544 68999999998888777776 777777777766654432
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~ 270 (303)
. ......+-......||++.|...++++-|-..|.+| ......++++|+ |+++||+||.|.+..++..
T Consensus 178 w--------edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf--psf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 178 W--------EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF--PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred c--------CCcccccCccccceeecccccccccHHHHHHHHHhc--cchhhccccccccccccccceeeeecCHHHHHH
Confidence 2 111112223345789999999999999999999999 888999999996 8999999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeec
Q 022058 271 ALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 271 Ai~-l~g~~~~g~~l~v~~a 289 (303)
|+. |||..++.+.|++.-+
T Consensus 248 Amrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 248 AMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHhhcccccccchhHhhhh
Confidence 998 9999999999987654
No 115
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.02 E-value=4e-10 Score=100.38 Aligned_cols=180 Identities=24% Similarity=0.254 Sum_probs=135.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC--CCceEEEEEecCHHHHHHHHHhCCc-ccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGT-MLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~--~~~G~~fV~f~~~~~A~~Ai~l~g~-~~~g~~i~v~~~~ 191 (303)
..++.|++++.+.+.+.+...++..+|....+.+..... .++|++++.|...+.+..|+.+.+. ...++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467899999999999998999999999887776665433 3899999999999999999996664 4445554443322
Q ss_pred CCCCCCCCCCCCCcccccccccceEE-EcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVY-CTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESA 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A 268 (303)
.-.... ..+....... ...++| |.+|++.+++++|+.+|... |.|..++++.++ +.++|+|+|.|.+..++
T Consensus 167 ~~~~~~---~n~~~~~~~~-~s~~~~~~~~~~f~~~~d~~~~~~~~~--~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 167 RRGLRP---KNKLSRLSSG-PSDTIFFVGELDFSLTRDDLKEHFVSS--GEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccc---cchhcccccC-ccccceeecccccccchHHHhhhccCc--CcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 111000 0001011112 234455 99999999999999999997 999999999886 68999999999999999
Q ss_pred HHHHHhCCceeCCeeeEEeecCCCCCCCCCCC
Q 022058 269 ILALNCSGMVLGSQPIRVSPSKTPVRPRVTRP 300 (303)
Q Consensus 269 ~~Ai~l~g~~~~g~~l~v~~a~~~~~~r~~r~ 300 (303)
..++..+...+.++.+.+.+..+....-..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDEPRPKSDGGLF 272 (285)
T ss_pred HHHhhcccCcccCcccccccCCCCcccccccc
Confidence 88887777889999999999987654434443
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=95.86 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=70.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH--hCCceeCCeeeEEe
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN--CSGMVLGSQPIRVS 287 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~--l~g~~~~g~~l~v~ 287 (303)
....++|||++|-..+++.+|+++|.+| |+|.++.+....+ +|||+|.+.++|+.|.. +|...+.|++|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqy--Geirsi~~~~~~~----CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQY--GEIRSIRILPRKG----CAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhc--CCeeeEEeecccc----cceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4456899999999999999999999999 9999999998875 99999999999999886 78888999999999
Q ss_pred ecCC
Q 022058 288 PSKT 291 (303)
Q Consensus 288 ~a~~ 291 (303)
|+.+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9987
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=9e-11 Score=97.38 Aligned_cols=132 Identities=23% Similarity=0.368 Sum_probs=111.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+...++|||+|+...++++.|.++|-+-|+|..+.|+.+..+..-||||.|+++-++.-|++ +||..+.++++.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r- 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR- 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc-
Confidence 34678999999999999999999999999999999998887743499999999999999999 9999999998887652
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcC----CCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTN----IDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAE 266 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----L~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e 266 (303)
.++ |...++++.+...|+.- |.+..+++.++. |+.+-++|+.+...-
T Consensus 85 --------------------------~G~shapld~r~~~ei~~~v~s~a--~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 85 --------------------------CGNSHAPLDERVTEEILYEVFSQA--GPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred --------------------------cCCCcchhhhhcchhhheeeeccc--CCCCCccccccccCCccCccchhhhhhh
Confidence 222 55667889899999998 999999999885 778889999987655
Q ss_pred HHHHHHH
Q 022058 267 SAILALN 273 (303)
Q Consensus 267 ~A~~Ai~ 273 (303)
+.-.++.
T Consensus 137 ~~P~~~~ 143 (267)
T KOG4454|consen 137 AVPFALD 143 (267)
T ss_pred cCcHHhh
Confidence 5555554
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=3e-10 Score=94.29 Aligned_cols=141 Identities=23% Similarity=0.237 Sum_probs=115.8
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc-eeeeecchhhhhhchhhhccccchHHhhhhcccCCCCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH-HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRL 102 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~~~ 102 (303)
+|||.|+...+|++-|.++|-+-|||+.|.|++++++.... ||+| .. +. ...-|++-+|+.+..
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f-----~~-----E~----sv~~a~~L~ng~~l~- 75 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFF-----PN-----EN----SVQLAGQLENGDDLE- 75 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeec-----cc-----cc----chhhhhhhcccchhc-
Confidence 89999999999999999999999999999999999988886 9999 44 33 456778888873321
Q ss_pred CchhhhhccCCCCCCEEEEcC----CCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hC
Q 022058 103 SGRAFRAQREDSVRRTVYVSD----IDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LG 176 (303)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~V~n----lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~ 176 (303)
......+++.|+ |...++++.+...|+.-|++..+++.++.++ ++-++|+.+...-....++. ..
T Consensus 76 ---------~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 76 ---------EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ---------cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhc
Confidence 222456788888 8889999999999999999999999988775 77899999999888888887 77
Q ss_pred CcccCCeeEEEe
Q 022058 177 GTMLGYYPVRVL 188 (303)
Q Consensus 177 g~~~~g~~i~v~ 188 (303)
+...--+++.+.
T Consensus 147 ~l~~~~~~~~~g 158 (267)
T KOG4454|consen 147 GLELFQKKVTIG 158 (267)
T ss_pred ccCcCCCCcccc
Confidence 666655554443
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.91 E-value=2e-08 Score=95.77 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=64.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcce-eEEEEecC-CCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEV-TRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i-~~v~i~~d-~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+.|-+.|+|++++-+||.++|..| -.+ .+|.+.+. +|..+|-|.|-|.+.++|..|.. |+++.|.++.|.|..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY--~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDY--EPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhccc--ccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3578899999999999999999998 333 34666654 58999999999999999999998 999999999998864
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.90 E-value=3e-09 Score=102.47 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
++|||||+|+..+++++|..+|+.||+|.+|.++. ++|||||.+...++|.+|+. |....+.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 78899999999999999999999999999999864 46899999999999999998 9999999999999998543
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-09 Score=94.80 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=76.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
.++...|||--|.+-+++++|.-+|+.| |.|.+|.|++|. |.+-.||||+|.+.+++.+|.- |++..|++++|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF--G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF--GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc--ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 3466889999999999999999999999 999999999995 7788999999999999999996 9999999999999
Q ss_pred eecCCCCC
Q 022058 287 SPSKTPVR 294 (303)
Q Consensus 287 ~~a~~~~~ 294 (303)
.|+....+
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99876554
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=6.7e-09 Score=91.82 Aligned_cols=76 Identities=17% Similarity=0.377 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH--hCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN--LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~--l~g~~~~g~~i~v~~~ 190 (303)
+...++|||++|-..+++.+|+++|-+||+|.++++.... |+|||+|.+.++|+.|.+ +|...|.|++|.|.|+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3357789999998899999999999999999999997644 699999999999999996 8888889999999998
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 76
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=6.6e-09 Score=85.84 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=70.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
....++|..+|..+.+.++..+|.+|. |.|..+++.+.. |.|+|||||+|.+.+.|..|-. ||++-+.++.|.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 346789999999999999999999984 677778887775 8999999999999999999998 999999999999998
Q ss_pred cCCC
Q 022058 289 SKTP 292 (303)
Q Consensus 289 a~~~ 292 (303)
-.|-
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7554
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=2e-08 Score=89.77 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=113.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEee-CCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-DPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~-~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
+...+..++|||..++.+|-.+|....-..-.+.+. ...+ ..|.+.|.|.+.+.-+.|++-+...+++|.|.|-.+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 445577899999999999999998442221111111 1122 45899999999999999999888899999999977643
Q ss_pred CCC-CC-------CCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhc--CcceeEEEEecC-CCCcccEEEEE
Q 022058 193 AIL-PV-------NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC--GGEVTRLRLLGD-HVHSTRIAFVE 261 (303)
Q Consensus 193 ~~~-~~-------~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~--~G~i~~v~i~~d-~~~~~g~afV~ 261 (303)
... .. .+.|.++ ...-.|..++||+++++.|+..+|.+.| .|..+.|-++.. .|+.+|-|||.
T Consensus 139 e~f~~iagg~s~e~~~flsk------~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSK------ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred hhheEecCCccccCCCCCCc------ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 311 00 0111111 1234678899999999999999997655 145556655554 68999999999
Q ss_pred EcCHHHHHHHHHhCCceeCCe
Q 022058 262 FAVAESAILALNCSGMVLGSQ 282 (303)
Q Consensus 262 f~~~e~A~~Ai~l~g~~~~g~ 282 (303)
|...++|+.|+.-|-..++-|
T Consensus 213 fa~ee~aq~aL~khrq~iGqR 233 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQNIGQR 233 (508)
T ss_pred ecCHHHHHHHHHHHHHHHhHH
Confidence 999999999996444444433
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.5e-09 Score=92.05 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+...|||.-|.+-++.++|.-+|+.||.|.+|.+++|..+ +.-||||+|++.+++++|.- |++..|.++.|.|.+++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4567999999999999999999999999999999999887 78899999999999999996 99999999999999874
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 3
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.81 E-value=2.4e-08 Score=83.33 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=74.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC-CC--CcccEEEEEEcCHHHHHHHHH-hCCceeC---Ceee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HV--HSTRIAFVEFAVAESAILALN-CSGMVLG---SQPI 284 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d-~~--~~~g~afV~f~~~e~A~~Ai~-l~g~~~~---g~~l 284 (303)
..+||||.+||.++...+|..+|.+| ..-+.+.|... ++ -++-+|||+|.+..+|..|++ |||..|+ +..|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f--~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRF--HGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccC--CCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 46899999999999999999999998 66666666544 32 356799999999999999999 9999995 7899
Q ss_pred EEeecCCCCCCCCCCCC
Q 022058 285 RVSPSKTPVRPRVTRPG 301 (303)
Q Consensus 285 ~v~~a~~~~~~r~~r~~ 301 (303)
++.++|...+.++.|.+
T Consensus 111 hiElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGS 127 (284)
T ss_pred EeeehhcCcccccCCCC
Confidence 99999988776666654
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=2.9e-08 Score=92.85 Aligned_cols=84 Identities=14% Similarity=0.258 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCC--CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
..+++|+|.+|...+...+|+.+|++| |.|+-++|++... ..++|+||++.+.++|.+||. ||-.+|+|+.|.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKy--GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKY--GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHh--cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 346789999999999999999999999 9999999998752 358999999999999999998 99999999999999
Q ss_pred ecCCCCCCC
Q 022058 288 PSKTPVRPR 296 (303)
Q Consensus 288 ~a~~~~~~r 296 (303)
.++..+...
T Consensus 481 kaKNEp~Gk 489 (940)
T KOG4661|consen 481 KAKNEPGGK 489 (940)
T ss_pred ecccCcccc
Confidence 997765443
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.3e-08 Score=97.97 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=113.3
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
.+||++||+.++++.+|+..|..+|.|.+|.|-+-..+..+. ||.| .. .. .+-.+.-.+.+
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~-----~n-----~d----mtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSL-----LN-----TD----MTPSAKFEESGPLI 438 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhh-----hc-----cc----cCcccchhhcCCcc
Confidence 389999999999999999999999999999997764433333 8888 54 33 44444444443
Q ss_pred --CCCCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-
Q 022058 98 --GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN- 174 (303)
Q Consensus 98 --g~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~- 174 (303)
|...+. .........+.+++++|+.++....|...|..||.|..|.+-. ...|+||.|++...++.|+.
T Consensus 439 ~~g~~r~g----lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 439 GNGTHRIG----LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccCccccc----ccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CCcceeeecccCccchhhHHH
Confidence 211111 1111233567899999999999999999999999998866522 23599999999999999999
Q ss_pred hCCcccCC--eeEEEeecCCC
Q 022058 175 LGGTMLGY--YPVRVLPSKTA 193 (303)
Q Consensus 175 l~g~~~~g--~~i~v~~~~~~ 193 (303)
|-|..++| +.+.|.++...
T Consensus 511 ~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HhcCcCCCCCcccccccccCC
Confidence 99999985 88999987654
No 129
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=2.4e-08 Score=96.41 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++||||++|+..+++.||.++|+.| |.|.+|.+.... |+|||++.+..+|.+|++ |++..+.++.|++.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feef--GeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEF--GEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhc--ccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 357899999999999999999999999 999999997665 599999999999999998 9999999999999998
Q ss_pred CC
Q 022058 290 KT 291 (303)
Q Consensus 290 ~~ 291 (303)
.-
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 53
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=2.6e-08 Score=93.12 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||.+|+..+-..+|+.+|++||.|.-.+++++-.+ -+.||||++.+.++|.+||. ||.+++.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3677999999999999999999999999999999987765 58899999999999999999 99999999999999876
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 131
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.72 E-value=4.6e-08 Score=80.88 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC-CceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
....+++..+|.-+.+..+..+|.++ |.+..+++.++..+ |+|||||+|++++.|.-|-+ ||+..+.++-|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45669999999999999999999988 78888888888765 89999999999999999998 9999999999999875
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=1.1e-07 Score=82.12 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
....|+|.|||+.++++||+++|..||.+..+.+-+++.+ +.|.|-|.|...++|.+|++ +|+..++|++|.+.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4577999999999999999999999999999999999887 89999999999999999999 999999999999887644
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.65 E-value=2.9e-08 Score=88.54 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=114.6
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhc----
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNF---- 95 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~---- 95 (303)
-+.|++++.+.+.+.+...+|.++|.+..+.+....+....+ |+.| +. .+ .+..++...
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f-----~~-----ks----~~~~~l~~s~~~~ 154 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHF-----AG-----KS----QFFAALEESGSKV 154 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhhccccccccceeecc-----cc-----HH----HHHHHHHhhhccc
Confidence 368999999999999999999999999999888866544333 8888 65 44 444433221
Q ss_pred ccCC---CCCCchhh------hhccCCCCCCEEE-EcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEe
Q 022058 96 NQGR---KRLSGRAF------RAQREDSVRRTVY-VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF 163 (303)
Q Consensus 96 ~~g~---~~~~~~~~------~~~~~~~~~~~l~-V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f 163 (303)
+.+. ..+..... ..........++| |++|+..+++++|+..|..+|.|..++++.++.+ .+|||||.|
T Consensus 155 ~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~ 234 (285)
T KOG4210|consen 155 LDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDF 234 (285)
T ss_pred cccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhh
Confidence 1111 11111000 0011122344455 9999999999999999999999999999998776 799999999
Q ss_pred cCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 164 ADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 164 ~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
.....+..++..+...+.++++.+....+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 235 SAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred hhchhHHHHhhcccCcccCcccccccCCC
Confidence 99999999997666778899999988653
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.64 E-value=1.3e-07 Score=81.69 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=72.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
....|+|.|||..++++||+++|..| |.+..+-|-.++ |.+.|.|-|.|...++|.+|++ +||..++|+.+++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~--~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEF--GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHh--ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34789999999999999999999999 999999999996 8999999999999999999998 9999999999998875
Q ss_pred CCC
Q 022058 290 KTP 292 (303)
Q Consensus 290 ~~~ 292 (303)
.++
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 443
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=8.6e-09 Score=100.47 Aligned_cols=142 Identities=13% Similarity=-0.010 Sum_probs=111.8
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCC-CCc--eeeeecchhhhhhchhhhccccchHHhhhhcccCC
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH-TDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR 99 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~-~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~ 99 (303)
.++||+||++.+.+.+|...|..+|.+..+++.-....+ .++ |+.| .. ++ .|.+|+.-...
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F-----~~-----~~----~~~aaV~f~d~-- 731 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEF-----LK-----PE----HAGAAVAFRDS-- 731 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEe-----ec-----CC----chhhhhhhhhh--
Confidence 358999999999999999999999998888776333322 233 9999 77 66 56665542221
Q ss_pred CCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCC
Q 022058 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGG 177 (303)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g 177 (303)
....+..|+|.|.|+..|.+.|+.+++.+|.+.+.+++..+.+ .+|.+||.|.++.++.+++. .+.
T Consensus 732 ------------~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 732 ------------CFFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred ------------hhhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchh
Confidence 0001567999999999999999999999999999998887776 89999999999999999997 877
Q ss_pred cccCCeeEEEeecCC
Q 022058 178 TMLGYYPVRVLPSKT 192 (303)
Q Consensus 178 ~~~~g~~i~v~~~~~ 192 (303)
..+.-+.+.|..+.+
T Consensus 800 ~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcCccccccCC
Confidence 777666666665433
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.1e-07 Score=84.62 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=96.7
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCC-----Cc---eeeeecchhhhhhchhhhccccchHHh
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHT-----DH---HFSVINNNFADDNKQSAIDNFNNNRRR 91 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~-----~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a 91 (303)
..+.+|||+.||+++||++|...|..||.+. |..+. +.+.. .+ ||.. -|.. +. ..+..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~-k~~~~~~~ppkGs~~Yvfl---vFe~-----E~----sV~~L 322 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPG-KANSRGRAPPKGSYGYVFL---VFED-----ER----SVQSL 322 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCC-CccccccCCCCCcccEEEE---Eecc-----hH----HHHHH
Confidence 6677899999999999999999999999975 34442 11111 11 4444 1133 21 11222
Q ss_pred hhhcc--cCCC---------------CCCchhh------hhccCCCCCCEEEEcCCCCCCCHHHHHHHhh-cCCceeEEE
Q 022058 92 RNNFN--QGRK---------------RLSGRAF------RAQREDSVRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCR 147 (303)
Q Consensus 92 ~~~~~--~g~~---------------~~~~~~~------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~ 147 (303)
+.... .++. .+.|... ...+.-+..+|||||+||.-++.++|-.+|. .||-|..+-
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaG 402 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVG 402 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEE
Confidence 22111 1111 1111111 1222334689999999999999999999999 899999999
Q ss_pred EeeCCC-C-CceEEEEEecCHHHHHHHHH
Q 022058 148 VCGDPH-S-VLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 148 i~~~~~-~-~~G~~fV~f~~~~~A~~Ai~ 174 (303)
|-.|+. . .+|-|=|+|++..+-.+||.
T Consensus 403 IDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 403 IDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred eccCcccCCCCCcceeeecccHHHHHHHh
Confidence 988854 4 89999999999999999997
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.56 E-value=7.1e-09 Score=93.69 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=116.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCC-cccCCeeEEEeecCCCCC
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG-TMLGYYPVRVLPSKTAIL 195 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g-~~~~g~~i~v~~~~~~~~ 195 (303)
.+|++||.+..+..+|+.+|...-.-.+-.++. ..||+||.+.+...|.+|++ ++| .++.|.++.|..+-++.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk- 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK- 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH-
Confidence 589999999999999999997541111111221 24899999999999999999 777 55779999998763221
Q ss_pred CCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEec-CCCCcccEEEEEEcCHHHHHHHHH-
Q 022058 196 PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG-DHVHSTRIAFVEFAVAESAILALN- 273 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~-d~~~~~g~afV~f~~~e~A~~Ai~- 273 (303)
...+.+-|+|+|+...++-|..+...| |.++.|.... |.. +-..-|+|.+.+.+..||.
T Consensus 78 ---------------qrsrk~Qirnippql~wevld~Ll~qy--g~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 78 ---------------QRSRKIQIRNIPPQLQWEVLDSLLAQY--GTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred ---------------HHhhhhhHhcCCHHHHHHHHHHHHhcc--CCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHh
Confidence 123568899999999999999999999 9999997643 332 2245578999999999998
Q ss_pred hCCceeCCeeeEEeec
Q 022058 274 CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 274 l~g~~~~g~~l~v~~a 289 (303)
|+|..+....+++.|-
T Consensus 139 l~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 139 LNGPQLENQHLKVGYI 154 (584)
T ss_pred hcchHhhhhhhhcccC
Confidence 9999999999999873
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=8.4e-08 Score=89.83 Aligned_cols=166 Identities=16% Similarity=0.202 Sum_probs=108.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..++|+|-|||.++++++|+.+|+.||+|..++.-.. .+|..||+|-+..+|++|++ |++.+|.|+.|+.......
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 5788999999999999999999999999998665433 46899999999999999999 9999999998883221111
Q ss_pred CC--CCCCCCCCCc------ccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCH
Q 022058 194 IL--PVNPTFLPRS------EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265 (303)
Q Consensus 194 ~~--~~~~~~~~~~------~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~ 265 (303)
.. ..+..+...- .....-....++ +.|++..+...+..+|..+ |.+.. +.. +.-...-|+.|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~--~~~~~-~~~---~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVD--GSSPG-RET---PLLNHQRFVEFADN 223 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhcc--Ccccc-ccc---cchhhhhhhhhccc
Confidence 00 0000000000 000011112333 3388888876666667666 76665 222 11112577888888
Q ss_pred HHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 266 ESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 266 e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
.++..+.. + |..+.+..-...++.+
T Consensus 224 ~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 224 RSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cchhhcccCC-ceecCCCCceEEecCC
Confidence 88755554 4 7777766655555543
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=2.5e-07 Score=88.70 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=73.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-----CCcccEEEEEEcCHHHHHHHHH-hCCceeCCee
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-----VHSTRIAFVEFAVAESAILALN-CSGMVLGSQP 283 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-----~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~ 283 (303)
.+..++|||+||++.++++.|...|..| |+|..++|+.-. .+.+.+|||-|.+..+|++|+. |+|..+.+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf--gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF--GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc--CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 4556899999999999999999999999 999999887542 3456799999999999999998 9999999999
Q ss_pred eEEeecCCCCCC
Q 022058 284 IRVSPSKTPVRP 295 (303)
Q Consensus 284 l~v~~a~~~~~~ 295 (303)
+++.|+++.+-+
T Consensus 249 ~K~gWgk~V~ip 260 (877)
T KOG0151|consen 249 MKLGWGKAVPIP 260 (877)
T ss_pred eeeccccccccC
Confidence 999999654433
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.53 E-value=1.9e-07 Score=86.93 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCC--CCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..+|||+|||.+++..+|++.|..||.|+...|.... ..+.+||||+|.+.++++.||.-+-..++++.+.|+.-+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4459999999999999999999999999988887644 2344899999999999999999778889999999987544
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.52 E-value=8.7e-07 Score=65.85 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=64.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc--CCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccC----CeeEE
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSS--CGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLG----YYPVR 186 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~--~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~----g~~i~ 186 (303)
.+||+|+|||...|.++|.+++.. .|...-+.++.|..+ +.|||||.|.+++.|.+..+ ++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 368999999999999999988863 467788888888765 89999999999999999998 9998885 35556
Q ss_pred EeecC
Q 022058 187 VLPSK 191 (303)
Q Consensus 187 v~~~~ 191 (303)
|.+++
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=2.8e-07 Score=88.38 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-----CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-----VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-----~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
..++|||+||+++++++.|-..|..||+|.+++++....- .+-||||.|-+..+|++|++ |+|+.+.++.+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4567999999999999999999999999999999885432 46799999999999999999 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
|+++-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98553
No 143
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.51 E-value=5.3e-08 Score=87.37 Aligned_cols=171 Identities=21% Similarity=0.238 Sum_probs=126.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-----CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-----VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-----~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
...|.|.||.++.+.++++.+|...|.|..+.|+..... ....|||.|.+...+..|..|..+.+-++.|.|-+.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347999999999999999999999999999999885443 357899999999999999998888888888888764
Q ss_pred CCCCC-------------------CCCC---CC------------------CCCcccc--cccccceEEEcCCCCCCCHH
Q 022058 191 KTAIL-------------------PVNP---TF------------------LPRSEDE--REMCSRTVYCTNIDKKVPQA 228 (303)
Q Consensus 191 ~~~~~-------------------~~~~---~~------------------~~~~~~~--~~~~~~~l~V~nL~~~~t~~ 228 (303)
-.... +.+. .- ++..... -+.-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 22111 0000 00 0000000 01123679999999999999
Q ss_pred HHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 229 EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 229 ~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
++...|..+ |.|.+..+.-... .-+|.+.|....+...|+.++|..+.-+...+..-+
T Consensus 167 e~~e~f~r~--Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 167 ESGESFERK--GEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhhhhhhhc--chhhhhhhhccCC--CcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhcC
Confidence 999999999 9999887765432 236789999998889999999988874444443333
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.49 E-value=2.5e-07 Score=80.01 Aligned_cols=81 Identities=27% Similarity=0.423 Sum_probs=74.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
......+||+|+.+.++.+++..+|+. | |.|..+.|+.|. ++++||+||+|.+.+.+..|+.|||..|.|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-C-g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-C-GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-c-CCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 456689999999999999999999999 5 999999999986 679999999999999999999999999999999999
Q ss_pred ecCCC
Q 022058 288 PSKTP 292 (303)
Q Consensus 288 ~a~~~ 292 (303)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87544
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.48 E-value=3.6e-07 Score=87.43 Aligned_cols=170 Identities=15% Similarity=0.061 Sum_probs=126.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~ 193 (303)
.+.+-+.+.+++.+..+++++|..- .|.++.|..+.-. ..|-++|.|....++++|++-|...+-.|.+.+...-..
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCcc
Confidence 4557778999999999999998643 3455555544433 379999999999999999998888888899988765322
Q ss_pred CCCC------------------CCCCCCCccc-------ccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE-EEE
Q 022058 194 ILPV------------------NPTFLPRSED-------EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR-LRL 247 (303)
Q Consensus 194 ~~~~------------------~~~~~~~~~~-------~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~-v~i 247 (303)
.... .+...++... .......+|||..||..+++.++.++|... -.|++ |.|
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~--~~Ved~I~l 467 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA--AAVEDFIEL 467 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh--hhhhheeEe
Confidence 1100 0001111100 112235789999999999999999999987 57777 777
Q ss_pred ecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 248 LGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 248 ~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+.+ ++-++.|||.|.+.+++..|.. -+.+.++.+.|+|..
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 7775 6778899999999999999988 677778888999875
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.48 E-value=1.2e-06 Score=65.17 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=68.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeC----CeeeEE
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLG----SQPIRV 286 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~----g~~l~v 286 (303)
+||-|+|+|...|.++|.+++...|.|...-+.++.|- +.+.|||||.|.++++|.+-.+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999998776888889999884 5679999999999999999888 9999885 567778
Q ss_pred eecCC
Q 022058 287 SPSKT 291 (303)
Q Consensus 287 ~~a~~ 291 (303)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=4.6e-07 Score=84.33 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=70.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
..+|||+|||.+++.++|.++|..| |.|....|.... ++..+||||+|.+.+++..|++-+-..+++++|.|.-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F--G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF--GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc--ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 3459999999999999999999999 999988776643 444499999999999999999977888999999999887
Q ss_pred CCCCCC
Q 022058 291 TPVRPR 296 (303)
Q Consensus 291 ~~~~~r 296 (303)
+..+..
T Consensus 366 ~~~~g~ 371 (419)
T KOG0116|consen 366 PGFRGN 371 (419)
T ss_pred cccccc
Confidence 754443
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.47 E-value=2.5e-07 Score=79.94 Aligned_cols=82 Identities=24% Similarity=0.337 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
.....+.+||+|+.+.++.+++...|+.||.|..+.++.|... ++||+||+|.+.+.++.++.||+..+.|+.+.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 4446788999999999999999999999999999999888765 79999999999999999999999999999999998
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7554
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.41 E-value=4.9e-07 Score=77.06 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=109.8
Q ss_pred CcccccchhhhHHH-H--HHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhccc--
Q 022058 25 LETKKSESEFTVQK-L--VDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (303)
Q Consensus 25 ~~~~nl~~~~t~~~-L--~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~-- 97 (303)
.++.|+--++..+- | ...|+.|-.+....+.++..+.... |+.| . +..+......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~-----k-------------~s~a~~k~~~~~ 160 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESF-----K-------------ASDALLKAETEK 160 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCc-----c-------------hhhhhhhhcccc
Confidence 55777766666555 4 7888988888888999888877766 7777 1 1111111111
Q ss_pred -----CCC--CCCchhhhhcc----CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEec
Q 022058 98 -----GRK--RLSGRAFRAQR----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFA 164 (303)
Q Consensus 98 -----g~~--~~~~~~~~~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~ 164 (303)
|++ +......+.+. -+..+..||+|.|.-+++.+.|-..|.+|-.....++++|..+ ++||+||.|.
T Consensus 161 ~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 161 EKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred ccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 222 22222222221 2335678999999999999999999999999999999999886 8999999999
Q ss_pred CHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 165 DEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 165 ~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
+..++..|+. |||.-++.|+|++..+
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhh
Confidence 9999999998 9999999999987654
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.40 E-value=1.8e-06 Score=61.45 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=47.1
Q ss_pred ceEEEcCCCCCCCHH----HHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 214 RTVYCTNIDKKVPQA----EVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~----~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
..|+|.|||...+.. .|++++.- |||.|..|. . +.|+|.|.+.+.|.+|.+ |+|..+.|+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v~----~----~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSVS----G----GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE------T----T-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEEe----C----CEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 468999999988764 56677777 778888773 1 489999999999999999 999999999999999
Q ss_pred c
Q 022058 289 S 289 (303)
Q Consensus 289 a 289 (303)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 8
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=1.1e-06 Score=82.60 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=65.0
Q ss_pred cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 207 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
.+...+..+|+|-|||.++++++|+.+|+.| |+|..|+--+. .+|.+||+|-+.-+|++|++ |++.++.|++|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~y--Geir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAY--GEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhh--cchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3345567899999999999999999999999 99998655444 34699999999999999999 999999999998
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.08 E-value=1.4e-05 Score=56.94 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=46.6
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhcCC-ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 117 RTVYVSDIDQNITEER----LAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~----l~~~F~~~G-~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
..|+|.|||.+.+... |+.++..|| .|.+|. .|.|+|.|.+.+.|.+|.+ |+|..+.|+.|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4599999999998776 556666886 666552 2579999999999999999 9999999999999986
Q ss_pred C
Q 022058 191 K 191 (303)
Q Consensus 191 ~ 191 (303)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=7.8e-05 Score=56.56 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=43.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-h--C---CceeCCeeeEEe
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-C--S---GMVLGSQPIRVS 287 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l--~---g~~~~g~~l~v~ 287 (303)
..|.|.+++..++.++|+..|++| |.|.+|.+.++.. .|+|.|.+.++|+.|+. + . +..+.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~--g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF--GEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc--CCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468888999999999999999999 9999999988754 79999999999999996 4 3 445666665554
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=0.00015 Score=55.02 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=36.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~ 174 (303)
+.|+|.+++..++.++|++.|+.||.|..|.+..... -|||.|.+.+.|++|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHH
Confidence 4688999999999999999999999999988866443 69999999999999997
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00017 Score=47.56 Aligned_cols=52 Identities=27% Similarity=0.442 Sum_probs=42.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHH
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai 173 (303)
+.|-|.+.|++..+..|+ .|..||+|..+.+.... -+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 568899998777655554 88899999998886322 38999999999999985
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.56 E-value=9.2e-05 Score=65.75 Aligned_cols=114 Identities=15% Similarity=0.245 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHhhcCCceeEEEEeeCCCC---CceE--EEEEecCHHHHHHHHH-hCCcccCCe
Q 022058 116 RRTVYVSDIDQNITEER----L--AGLFSSCGQVVDCRVCGDPHS---VLRF--AFVEFADEHGARAALN-LGGTMLGYY 183 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~----l--~~~F~~~G~i~~~~i~~~~~~---~~G~--~fV~f~~~~~A~~Ai~-l~g~~~~g~ 183 (303)
+.-+||-+||+.+..++ | .++|.+||.|..|.+-+.-.. -.+. .||+|.+.++|.+||. .+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34489999998876665 3 579999999999888653311 1233 4999999999999998 999999999
Q ss_pred eEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCC---CCCHHHHHHHhh
Q 022058 184 PVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK---KVPQAEVKQFFE 235 (303)
Q Consensus 184 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~---~~t~~~L~~~F~ 235 (303)
.|+..+..++.... +..... =+...++|+.--.+ ..+.++|...=.
T Consensus 194 ~lkatYGTTKYCts---YLRn~~---CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 194 VLKATYGTTKYCTS---YLRNAV---CPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred eEeeecCchHHHHH---HHcCCC---CCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 99999986654210 111100 01224566643322 467787776533
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.49 E-value=0.00035 Score=52.33 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=53.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEE-------------EecCCCCcccEEEEEEcCHHHHHHHHHhCCceeC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR-------------LLGDHVHSTRIAFVEFAVAESAILALNCSGMVLG 280 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~-------------i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~ 280 (303)
.-|.|.+.|+. ....|.++|++| |.|.... +... ..+..|+|.++.+|.+|+.-||..+.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~--G~Ile~~~~~~~~~~~~~~~~~~~----~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSF--GTILEHFEVLRSSSGINPYPIPSG----GNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCC--S-EECEEGGG----------E-CC----TTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred eEEEEEccCHH-HHHHHHHHHHhc--ceEEEeecccccccccccccCCCC----CCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 56888899988 456788999998 9998775 2222 24999999999999999999999998
Q ss_pred Ce-eeEEeecCCCC
Q 022058 281 SQ-PIRVSPSKTPV 293 (303)
Q Consensus 281 g~-~l~v~~a~~~~ 293 (303)
|. .+-|.+.++..
T Consensus 80 g~~mvGV~~~~~~~ 93 (100)
T PF05172_consen 80 GSLMVGVKPCDPAD 93 (100)
T ss_dssp TCEEEEEEE-HHHH
T ss_pred CcEEEEEEEcHHhH
Confidence 75 66688875443
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00027 Score=60.69 Aligned_cols=83 Identities=25% Similarity=0.206 Sum_probs=72.6
Q ss_pred HHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEE
Q 022058 168 GARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLR 246 (303)
Q Consensus 168 ~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~ 246 (303)
-|..|-. |++....|+.+.|.++.. ..|||.||...+..+.|.+.|+.| |.|....
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------a~l~V~nl~~~~sndll~~~f~~f--g~~e~av 62 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------AELYVVNLMQGASNDLLEQAFRRF--GPIERAV 62 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------ceEEEEecchhhhhHHHHHhhhhc--Cccchhe
Confidence 4566665 999999999999999731 579999999999999999999999 9999977
Q ss_pred EecC-CCCcccEEEEEEcCHHHHHHHHH
Q 022058 247 LLGD-HVHSTRIAFVEFAVAESAILALN 273 (303)
Q Consensus 247 i~~d-~~~~~g~afV~f~~~e~A~~Ai~ 273 (303)
+..| .++..+-++|.|...-.|.+|..
T Consensus 63 ~~vD~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 63 AKVDDRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred eeecccccccccchhhhhcchhHHHHHH
Confidence 7666 58899999999999999988886
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.44 E-value=0.00074 Score=50.57 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=51.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEE-EeeC-------CC-CCceEEEEEecCHHHHHHHHHhCCcccCCeeE
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGD-------PH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~-i~~~-------~~-~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i 185 (303)
..+.|.|-+.|+. ....+-+.|++||+|.+.. +.++ +. .....-.|+|.++.+|.+||..||..+.|.-|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4567889899988 5566777899999998774 1111 00 12358999999999999999999999988544
Q ss_pred -EEeec
Q 022058 186 -RVLPS 190 (303)
Q Consensus 186 -~v~~~ 190 (303)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 46664
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.38 E-value=0.00016 Score=64.88 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCcee--------EEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVV--------DCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYY 183 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~ 183 (303)
..-+|||-+||..+++++|.++|.++|.|. .|.+.+++.+ .||-|.|.|.+...|+.|+. +++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 466799999999999999999999999884 3455566665 79999999999999999999 999999999
Q ss_pred eEEEeecCC
Q 022058 184 PVRVLPSKT 192 (303)
Q Consensus 184 ~i~v~~~~~ 192 (303)
+|+|..+..
T Consensus 145 ~ikvs~a~~ 153 (351)
T KOG1995|consen 145 TIKVSLAER 153 (351)
T ss_pred Cchhhhhhh
Confidence 999987643
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.00052 Score=61.10 Aligned_cols=76 Identities=17% Similarity=0.368 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCCHHH----H--HHHhhhhcCcceeEEEEecCC---CCccc--EEEEEEcCHHHHHHHHH-hCCceeCC
Q 022058 214 RTVYCTNIDKKVPQAE----V--KQFFEAACGGEVTRLRLLGDH---VHSTR--IAFVEFAVAESAILALN-CSGMVLGS 281 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~----L--~~~F~~~~~G~i~~v~i~~d~---~~~~g--~afV~f~~~e~A~~Ai~-l~g~~~~g 281 (303)
.-+||-+|++.+..++ | .++|.+| |.|..+.|-+.. ....+ -.+|+|.+.|+|.+||. .+|..++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQy--GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQY--GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhc--cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4589999999887665 2 3789999 999999887653 11122 35999999999999998 99999999
Q ss_pred eeeEEeecCC
Q 022058 282 QPIRVSPSKT 291 (303)
Q Consensus 282 ~~l~v~~a~~ 291 (303)
|.|+..|..+
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999998754
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.34 E-value=0.00021 Score=64.13 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=68.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE--------EEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR--------LRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~--------v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
...+|||-+||..+++.+|..+|.+- |.|.. +.|-+|. +.++|-|.|.|.+..+|+.|+. +++..+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qc--g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQC--GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhc--ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45789999999999999999999994 87753 4555564 6789999999999999999999 9999999
Q ss_pred CeeeEEeecCCC
Q 022058 281 SQPIRVSPSKTP 292 (303)
Q Consensus 281 g~~l~v~~a~~~ 292 (303)
+..|+|+++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999998543
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00091 Score=63.35 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=61.3
Q ss_pred ccceEEEcCCCCCCC------HHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeC-Ce
Q 022058 212 CSRTVYCTNIDKKVP------QAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLG-SQ 282 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t------~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~-g~ 282 (303)
-...|+|-|+|.--. ..-|.++|+++ |.|+...++.+. |.++||.|++|.+..+|..|++ |||+.|+ ++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~--gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKA--GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhh--ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 346788999885321 24567899999 999999999885 7899999999999999999999 9999997 56
Q ss_pred eeEEe
Q 022058 283 PIRVS 287 (303)
Q Consensus 283 ~l~v~ 287 (303)
++.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 66665
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.31 E-value=0.00076 Score=58.97 Aligned_cols=77 Identities=23% Similarity=0.259 Sum_probs=60.0
Q ss_pred ceEEEcCCC--CCCC---HHHHHHHhhhhcCcceeEEEEecCCCC---cccEEEEEEcCHHHHHHHHH-hCCceeCCeee
Q 022058 214 RTVYCTNID--KKVP---QAEVKQFFEAACGGEVTRLRLLGDHVH---STRIAFVEFAVAESAILALN-CSGMVLGSQPI 284 (303)
Q Consensus 214 ~~l~V~nL~--~~~t---~~~L~~~F~~~~~G~i~~v~i~~d~~~---~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l 284 (303)
+.|.++|+- ..++ +++++..+++| |.|..|.|.-+++. ..--.||+|...++|.+|+- |||+.|+||.+
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKy--g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKY--GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhh--cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 345556542 2333 46888999998 99999988877643 23358999999999999998 99999999999
Q ss_pred EEeecCCC
Q 022058 285 RVSPSKTP 292 (303)
Q Consensus 285 ~v~~a~~~ 292 (303)
...|.+..
T Consensus 360 ~A~Fyn~e 367 (378)
T KOG1996|consen 360 SACFYNLE 367 (378)
T ss_pred eheeccHH
Confidence 99887543
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.26 E-value=0.00086 Score=44.16 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=42.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHH
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai 272 (303)
+.|-|.+.++... +.+..+|..| |+|..+.+..... +.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f--GeI~~~~~~~~~~----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF--GEIVDIYVPESTN----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc--CCEEEEEcCCCCc----EEEEEECCHHHHHhhC
Confidence 4678888887765 4566689998 9999999984433 8999999999999985
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0013 Score=62.43 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=62.3
Q ss_pred CCCCEEEEcCCCCCCC--HH----HHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccC-Cee
Q 022058 114 SVRRTVYVSDIDQNIT--EE----RLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLG-YYP 184 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t--~~----~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~-g~~ 184 (303)
.....|+|-|+|---. .+ -|..+|+.+|.|....++.+..+ .+||.|++|.+..+|+.|++ +||..++ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3466799999985322 22 36679999999999999987765 89999999999999999999 9999987 677
Q ss_pred EEEee
Q 022058 185 VRVLP 189 (303)
Q Consensus 185 i~v~~ 189 (303)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77754
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.22 E-value=0.0018 Score=51.49 Aligned_cols=56 Identities=29% Similarity=0.489 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 022058 228 AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 228 ~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~ 291 (303)
.+|.+.|..| |.+.-+++.-+ .-+|+|.+-++|.+|+.|+|.+++|+.|+|++..|
T Consensus 51 ~~ll~~~~~~--GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQY--GEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCC--S-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhC--CceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 4788889998 99998888766 48999999999999999999999999999998654
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.77 E-value=0.0014 Score=62.57 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=62.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCcee---CCeeeE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVL---GSQPIR 285 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~---~g~~l~ 285 (303)
...+..|+|.||---+|..+|+.+..+-| |.|+.. ..|+ -+..|||.|.+.++|...+. |||..+ +++.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~--WmDk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEF--WMDK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhcc-CchHHH--HHHH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 44568899999999999999999999875 777766 3332 22379999999999999998 999887 578898
Q ss_pred EeecC
Q 022058 286 VSPSK 290 (303)
Q Consensus 286 v~~a~ 290 (303)
+.|+.
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88863
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.75 E-value=0.00078 Score=57.89 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=58.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC----------Cc----eEEEEEecCHHHHHHHHH-hCCccc
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----------VL----RFAFVEFADEHGARAALN-LGGTML 180 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------~~----G~~fV~f~~~~~A~~Ai~-l~g~~~ 180 (303)
...||+++||+.++..-|+++|+.||.|-.|.+-..... ++ .-|.|+|.+...|..+.. ||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 356999999999999999999999999999988664321 11 138899999999999888 999999
Q ss_pred CCee
Q 022058 181 GYYP 184 (303)
Q Consensus 181 ~g~~ 184 (303)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9865
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.74 E-value=0.0074 Score=48.01 Aligned_cols=54 Identities=31% Similarity=0.432 Sum_probs=46.0
Q ss_pred HHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 132 RLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 132 ~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
+|-+.|..||.+.-+++.-+ .-+|+|.+-++|.+|+.++|..+.|+.|.|....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 57778889999998888753 4899999999999999999999999999998754
No 171
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.62 E-value=0.00017 Score=65.90 Aligned_cols=142 Identities=17% Similarity=0.250 Sum_probs=99.4
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCC--CCCCc-eeeeecchhhhhhchhhhccccchHHhhhhccc--
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYH--QHTDH-HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~--~~~~~-~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~-- 97 (303)
++++++||....+..+|+.+|... .++-... -++.. ||.+ .. .. -|-+++..+++
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~-----pd-----q~----wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDC-----PD-----QQ----WANKAIETLSGKV 61 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccC-----Cc-----hh----hhhhhHHhhchhh
Confidence 378999999999999999999864 1111110 01111 6666 33 33 56688888877
Q ss_pred ---CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEe-eCCCCCceEEEEEecCHHHHHHH
Q 022058 98 ---GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFAFVEFADEHGARAA 172 (303)
Q Consensus 98 ---g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~-~~~~~~~G~~fV~f~~~~~A~~A 172 (303)
|++ .+....... ..++.+.|.|+|+...++.|..+...||.++.|... .+..+ -.-=|+|...+.+..|
T Consensus 62 elqGkr~e~~~sv~kk----qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 62 ELQGKRQEVEHSVPKK----QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQHRQA 135 (584)
T ss_pred hhcCceeeccchhhHH----HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHHHHHH
Confidence 433 111111111 134569999999999999999999999999998653 33332 2344678999999999
Q ss_pred HH-hCCcccCCeeEEEeec
Q 022058 173 LN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 173 i~-l~g~~~~g~~i~v~~~ 190 (303)
|. ++|..+....++|.+-
T Consensus 136 i~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 136 IHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHhhcchHhhhhhhhcccC
Confidence 98 9999999988888874
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.61 E-value=0.0012 Score=56.85 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=51.0
Q ss_pred HHHHHHhh-hhcCcceeEEEEecCCC-CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 228 AEVKQFFE-AACGGEVTRLRLLGDHV-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 228 ~~L~~~F~-~~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
++|...|+ +| |.|+.+.|...-+ .-.|-++|.|...++|++|++ |||.++.|++|+..++.
T Consensus 83 Ed~f~E~~~ky--gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKY--GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHh--hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45556666 77 9999987766533 457789999999999999999 99999999999999873
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.51 E-value=0.00095 Score=57.38 Aligned_cols=66 Identities=6% Similarity=0.084 Sum_probs=54.4
Q ss_pred cccCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCC---------CCCc------eeeeecchhhhhhchhhh
Q 022058 18 NNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ---------HTDH------HFSVINNNFADDNKQSAI 82 (303)
Q Consensus 18 ~~~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---------~~~~------~v~f~~~~~~~~~~~~~~ 82 (303)
++.+.|=||++|+|+.+...-||++|+.||+|-.|.|-+..+. +..+ ||+| .+ ..
T Consensus 70 kkrk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF-----~~-----Kr 139 (278)
T KOG3152|consen 70 KKRKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEF-----IS-----KR 139 (278)
T ss_pred hhccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHH-----HH-----HH
Confidence 4457788999999999999999999999999999999876654 2211 8888 77 66
Q ss_pred ccccchHHhhhhccc
Q 022058 83 DNFNNNRRRRNNFNQ 97 (303)
Q Consensus 83 ~~~~~A~~a~~~~~~ 97 (303)
.|++....||+
T Consensus 140 ----vAK~iAe~Lnn 150 (278)
T KOG3152|consen 140 ----VAKRIAELLNN 150 (278)
T ss_pred ----HHHHHHHHhCC
Confidence 78888888887
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.49 E-value=0.0034 Score=57.70 Aligned_cols=69 Identities=25% Similarity=0.454 Sum_probs=57.4
Q ss_pred hhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeC---CCC------------CceEEEEEecCHHHHHHH
Q 022058 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHS------------VLRFAFVEFADEHGARAA 172 (303)
Q Consensus 108 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~---~~~------------~~G~~fV~f~~~~~A~~A 172 (303)
....+.-.+++|.+-|||.+-.-+-|.++|..+|.|.+|+|+.. +.. .+-+|+|+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 33334457899999999999999999999999999999999875 211 146899999999999999
Q ss_pred HH-hC
Q 022058 173 LN-LG 176 (303)
Q Consensus 173 i~-l~ 176 (303)
.+ +|
T Consensus 303 ~e~~~ 307 (484)
T KOG1855|consen 303 RELLN 307 (484)
T ss_pred HHhhc
Confidence 99 54
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.48 E-value=0.0014 Score=56.52 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=46.3
Q ss_pred cCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 139 SCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 139 ~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+||+|+++.+..+..- -.|=.||.|..+++|++|+. ||+.++.|++|...++.
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 8999999877655443 57889999999999999999 99999999999998863
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.45 E-value=0.013 Score=41.84 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=41.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~ 176 (303)
....+|. .|..+...||.++|+.||.|. |..+-|. -|||...+.+.|..++. +.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 3445666 999999999999999999975 6676554 49999999999999998 54
No 177
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.45 E-value=0.0025 Score=57.06 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC--ceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
+-.+|||||-|.+|.+||.+.....| .+.++++..++.. |||||+|...+...+++-++ |-..+|.|..-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 33599999999999999998888766 5667777665543 89999999999999999999 888888886555543
No 178
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.44 E-value=0.0034 Score=56.24 Aligned_cols=74 Identities=11% Similarity=0.173 Sum_probs=60.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCc--ceeEEEEecC--CCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGG--EVTRLRLLGD--HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G--~i~~v~i~~d--~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
..++||+||-..+|++||.+..... | .+.++++.-. .|+++|||+|...+..+..+.++ |-.++|+|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~--G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST--GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh--hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4689999999999999999998886 6 4455665554 38999999999999988899998 89999998765554
Q ss_pred e
Q 022058 288 P 288 (303)
Q Consensus 288 ~ 288 (303)
.
T Consensus 158 ~ 158 (498)
T KOG4849|consen 158 S 158 (498)
T ss_pred c
Confidence 3
No 179
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.32 E-value=0.0081 Score=54.72 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCC-----CcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHV-----HSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
..|-|.||.+.++.++++.+|.-. |.|..+.|.+..+ ...-.|||.|.+..++..|..|-++.+-++.|.|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l--GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL--GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc--cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 478999999999999999999999 9999999988532 234589999999999999999888888787777765
Q ss_pred c-CCCC
Q 022058 289 S-KTPV 293 (303)
Q Consensus 289 a-~~~~ 293 (303)
+ .+++
T Consensus 86 ~~~~~~ 91 (479)
T KOG4676|consen 86 YGDEVI 91 (479)
T ss_pred cCCCCC
Confidence 4 4443
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.12 E-value=0.0068 Score=55.84 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=55.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC---C----CC--------cccEEEEEEcCHHHHHHHHH-
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD---H----VH--------STRIAFVEFAVAESAILALN- 273 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d---~----~~--------~~g~afV~f~~~e~A~~Ai~- 273 (303)
+.+.++|.+.|||.+-.-+.|.++|..+ |.|..|+|..- + +. .+-+|+|+|...+.|.+|.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~--G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTV--GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcc--cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3467999999999998889999999998 99999998864 1 11 25589999999999999999
Q ss_pred hCCc
Q 022058 274 CSGM 277 (303)
Q Consensus 274 l~g~ 277 (303)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 6443
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.83 E-value=0.072 Score=36.09 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcC-cceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACG-GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN 273 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~-G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~ 273 (303)
..|+|+++. .++.++|+.+|..|++ ....+|..+.|. .|-|.|.+.+.|.+|+.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 579999987 4777889999999841 356788888887 69999999999999986
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.37 E-value=0.051 Score=47.86 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCceeEEEEeeCCCC---CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 130 EERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 130 ~~~l~~~F~~~G~i~~~~i~~~~~~---~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
++++++-..+||.|..|.|.-.+.. -.---||+|+..++|.+|+- |||..|+||.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3456777889999999988877653 12348999999999999997 99999999999887753
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.28 E-value=0.16 Score=38.71 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=51.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
..+.+...|..++.++|..+.+.+. ..|..++|++|....+-.+.++|.+.++|..-.. .||+.|.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444455555666777877777764 6788899999975567789999999999999887 9999874
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.76 E-value=0.33 Score=37.05 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=49.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcC-CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 119 VYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 119 l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
+.+...|+.++-++|..+.+.+ ..|..++|++|...++-.+.+.|.+.++|+.... +||+.+.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4445555666677777666655 4678889998877788899999999999999998 9998886
No 185
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.73 E-value=0.21 Score=46.71 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=60.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcC-CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
..++.|+|-.+|-.++-.||-.+...+ -.|.++++++|...++-...|.|.+.++|....+ +||..+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 347889999999999999998888755 4689999999777788889999999999999998 9999986
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.47 E-value=0.081 Score=50.50 Aligned_cols=69 Identities=20% Similarity=0.386 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh--cCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFS--SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG--GTMLGYYPVRVL 188 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~--~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~--g~~~~g~~i~v~ 188 (303)
..|.|.++-||.++..++++.||+ .|..+.+|.+-.+.+ =||+|++..+|+.|.+ |. -.+|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 456678899999999999999998 588999999987665 7999999999999997 43 355677776543
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.35 E-value=0.034 Score=53.36 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-cCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCccc---CCeeEEEee
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTML---GYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~---~g~~i~v~~ 189 (303)
.+..|+|.||-.-+|.-+|+.++. .+|.|++. +| |+ -+..|||.|.+.++|.+-+. |||..+ +++.|.+.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 355699999999999999999998 67777776 33 22 24579999999999999998 999777 368888888
Q ss_pred cC
Q 022058 190 SK 191 (303)
Q Consensus 190 ~~ 191 (303)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 64
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.32 E-value=0.19 Score=42.02 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=46.8
Q ss_pred CHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC--CceeCCeeeEEeecCCCC
Q 022058 226 PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS--GMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 226 t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~--g~~~~g~~l~v~~a~~~~ 293 (303)
..+.|+++|..+ +.+....+++.=+ -..|.|.+.++|..|.. |+ +..+.|..+++-|+.+..
T Consensus 8 ~~~~l~~l~~~~--~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTY--DPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhc--CCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 357899999999 9888888887743 69999999999999998 99 999999999999985443
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.25 E-value=0.067 Score=44.46 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=48.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-CCce---eEEEEeeCCCC----CceEEEEEecCHHHHHHHHH-hCCcccCC---
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSS-CGQV---VDCRVCGDPHS----VLRFAFVEFADEHGARAALN-LGGTMLGY--- 182 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i---~~~~i~~~~~~----~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g--- 182 (303)
....|.|++||+++|++++.+.++. ++.- ..+.-...... .-.-|||.|.+.+++..... ++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999997776 6665 33332222211 23569999999999999998 99977742
Q ss_pred --eeEEEeec
Q 022058 183 --YPVRVLPS 190 (303)
Q Consensus 183 --~~i~v~~~ 190 (303)
.+-.|.++
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 34455554
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.21 E-value=0.066 Score=39.02 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=47.5
Q ss_pred EEEEecCHHHHHHHHH--hCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhh
Q 022058 159 AFVEFADEHGARAALN--LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236 (303)
Q Consensus 159 ~fV~f~~~~~A~~Ai~--l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~ 236 (303)
|.|+|.+..-|++.++ -+...+++..+.|.-+.-... ...+-+-......++|.|.|||...++++|++..+-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~-----~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG-----HLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC-----CceEEEEEEcccCCEEEEeCCCCCCChhhheeeEEE
Confidence 6899999999999998 444555666665554311000 000111112345688999999999999998877554
Q ss_pred h
Q 022058 237 A 237 (303)
Q Consensus 237 ~ 237 (303)
+
T Consensus 76 h 76 (88)
T PF07292_consen 76 H 76 (88)
T ss_pred E
Confidence 3
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.21 E-value=0.14 Score=40.44 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCCCC----CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 115 VRRTVYVSDIDQNI----TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.-.+|.|.=|..++ +...+-..++.||+|.+|.+.... -|.|.|.+..+|-+|+. ++. ...|..+.+.|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 45567776555444 344566677899999999886433 49999999999999998 544 66788899988
Q ss_pred cC
Q 022058 190 SK 191 (303)
Q Consensus 190 ~~ 191 (303)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.20 E-value=0.3 Score=33.09 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcC---CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSC---GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~ 174 (303)
...|+|.+++ +++.++|+.+|..| .....|.++-|.. |=|.|.+.+.|.+|+.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-----cNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-----CNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-----EEEEECCHHHHHHHHH
Confidence 3468999985 58889999999988 1345788887664 8999999999999986
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.04 E-value=0.068 Score=46.27 Aligned_cols=74 Identities=28% Similarity=0.337 Sum_probs=61.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hC--C--cccCCeeEEEeec
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LG--G--TMLGYYPVRVLPS 190 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~--g--~~~~g~~i~v~~~ 190 (303)
..|+|.||+.-++.+.|..-|+.||+|+...++.|... ..|-++|.|...-.|.+|.. ++ + ....+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 77999999999999999999999999998888877665 77889999999999999997 42 2 3334677777654
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.03 E-value=0.2 Score=35.92 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=39.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS 275 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~ 275 (303)
...+|. .|..+...||.++|++| |.|. |..+.|. .|||...+.+.|..|+. ++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf--G~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF--GQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC--CCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccC--CcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 445555 99999999999999999 8775 4455554 79999999999999887 53
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.59 E-value=0.23 Score=39.30 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=53.8
Q ss_pred ccccceEEEcCCCCC----CCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeee
Q 022058 210 EMCSRTVYCTNIDKK----VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPI 284 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~----~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l 284 (303)
+++-.+|.|+=|..+ -+-..+....+.| |+|.+|.+.-.+ .|.|.|.+..+|.+|+. ++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f--GpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF--GPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc--CCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 345567777655444 3334555667789 999999886443 79999999999999998 654 6678888
Q ss_pred EEeecC
Q 022058 285 RVSPSK 290 (303)
Q Consensus 285 ~v~~a~ 290 (303)
+++|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888854
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.57 E-value=0.045 Score=51.22 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCCCC-CHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 022058 221 IDKKV-PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 221 L~~~~-t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~ 291 (303)
.|+.. +-.+|..+|.+| |.|..|.|-.... .|.|+|.+..+|-.|-..++..|.++.|+|-|-++
T Consensus 380 ~~~glnt~a~ln~hfA~f--G~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 380 SPFGLNTIADLNPHFAQF--GEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cCCCCchHhhhhhhhhhc--CccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 34443 458899999999 9999999866532 69999999999988888899999999999999887
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.25 E-value=0.046 Score=51.12 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=61.1
Q ss_pred CCEEEEcCCCCCC-CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNI-TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~-t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
.+.|-+.-.|+.+ +..+|...|.+||.|..|.+-.... .|.|+|.+..+|-.|-..++..|++|.|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 4456666666654 5778999999999999999866533 59999999999999999999999999999999765
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=0.17 Score=44.91 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCee-EEEee
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYP-VRVLP 189 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~-i~v~~ 189 (303)
...|-|-++|+.-. ..|..+|+.||.|.+.....+- -+-+|.|.+.-+|++||..||+.|+|-. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 45688888887654 3566789999999887665322 3899999999999999999999998743 44444
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.96 E-value=0.13 Score=42.84 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=48.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhh-hcCcce---eEEEEecC-C--C-CcccEEEEEEcCHHHHHHHHH-hCCceeC---
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEA-ACGGEV---TRLRLLGD-H--V-HSTRIAFVEFAVAESAILALN-CSGMVLG--- 280 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~-~~~G~i---~~v~i~~d-~--~-~~~g~afV~f~~~e~A~~Ai~-l~g~~~~--- 280 (303)
...|.|++||+++|++++++.+.+ + +.- .++.-..+ . . ..-.-|+|.|.+.+++..-.. ++|+.|.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l--~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWL--PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhc--ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 368999999999999999997777 5 544 23321122 1 1 224469999999999888887 9998873
Q ss_pred C--eeeEEeecCC
Q 022058 281 S--QPIRVSPSKT 291 (303)
Q Consensus 281 g--~~l~v~~a~~ 291 (303)
| ..-.|.+|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 2455666643
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.74 E-value=0.34 Score=45.26 Aligned_cols=67 Identities=10% Similarity=0.212 Sum_probs=58.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
+..|+|-.+|..++-.||..++..++ -.|.+++|++|.--.+=..++.|.+.++|..-.+ +||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~-~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI-KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh-hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 58899999999999999999999986 7899999999753344579999999999999998 9999884
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.37 E-value=0.056 Score=48.58 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCCHHHHH---HHhhhhcCcceeEEEEecCC----C-CcccEEEEEEcCHHHHHHHHH-hCCceeCCeee
Q 022058 214 RTVYCTNIDKKVPQAEVK---QFFEAACGGEVTRLRLLGDH----V-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPI 284 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~---~~F~~~~~G~i~~v~i~~d~----~-~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l 284 (303)
.-+||-+|+..+..+.+. ..|.+| |.|..|.+..+. + .....++|+|...++|..||. .+|..++|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy--gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY--GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc--ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 346777888776554443 568898 999999888865 1 123459999999999999999 99999999999
Q ss_pred EEeecCCCCC
Q 022058 285 RVSPSKTPVR 294 (303)
Q Consensus 285 ~v~~a~~~~~ 294 (303)
+..++.++-.
T Consensus 156 ka~~gttkyc 165 (327)
T KOG2068|consen 156 KASLGTTKYC 165 (327)
T ss_pred HHhhCCCcch
Confidence 9988876543
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.33 E-value=0.068 Score=48.04 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=61.4
Q ss_pred CCEEEEcCCCCCCCHHH-HH--HHhhcCCceeEEEEeeCCC--C---CceEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 022058 116 RRTVYVSDIDQNITEER-LA--GLFSSCGQVVDCRVCGDPH--S---VLRFAFVEFADEHGARAALN-LGGTMLGYYPVR 186 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~-l~--~~F~~~G~i~~~~i~~~~~--~---~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~ 186 (303)
+.-+||-+|+..+..+. |+ +.|.+||.|.++.+..+.. . ..--+||+|...++|..||. .+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 34488888987765554 43 4888999999999988662 1 11239999999999999999 999999999988
Q ss_pred EeecCCCC
Q 022058 187 VLPSKTAI 194 (303)
Q Consensus 187 v~~~~~~~ 194 (303)
..+..++.
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 87765543
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.12 E-value=0.57 Score=39.19 Aligned_cols=60 Identities=23% Similarity=0.168 Sum_probs=44.9
Q ss_pred CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEeecCC
Q 022058 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG--GTMLGYYPVRVLPSKT 192 (303)
Q Consensus 129 t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~--g~~~~g~~i~v~~~~~ 192 (303)
..+.|+++|..|+.+.....++.-. -..|.|.+.+.|.+|.. ++ +..+.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4578999999999998887776443 59999999999999998 99 8999999999988743
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.13 E-value=0.93 Score=40.34 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=52.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCe-eeEEee
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQ-PIRVSP 288 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~-~l~v~~ 288 (303)
.=|-|.++|+.-. .-|..+|+++ |.|++..-....+ +-+|.|.+.-+|++||.-||+.|+|. .|-|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~c--G~Vvkhv~~~ngN----wMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRC--GEVVKHVTPSNGN----WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhh--CeeeeeecCCCCc----eEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 3456668887653 5688899997 9998876653333 99999999999999999999999875 445665
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.90 E-value=0.17 Score=50.71 Aligned_cols=70 Identities=31% Similarity=0.346 Sum_probs=59.5
Q ss_pred EEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCcee--CCeeeEEeecCCC
Q 022058 217 YCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVL--GSQPIRVSPSKTP 292 (303)
Q Consensus 217 ~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~--~g~~l~v~~a~~~ 292 (303)
++.|.+-..+-.-|.-+|..| |.|.++..+++-+ .|.|+|.+.+.|..|+. |+|+++ -|-..+|.+|++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~y--g~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDY--GSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhh--cchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 444455566778899999999 9999999998865 89999999999999999 999986 4778999998764
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.64 E-value=1.6 Score=29.96 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 224 KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 224 ~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
.++-++++.-+..| ...+|..|+- --||.|.+..+|.+|.. .||..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y-----~~~~I~~d~t----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-----RWDRIRDDRT----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC-----CcceEEecCC----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999998 3444555541 27999999999999999 8999988877654
No 207
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=2.1 Score=41.42 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=62.0
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHhhhhc--CcceeEEEEecCC-CC----------c----------------------
Q 022058 211 MCSRTVYCTNIDKK-VPQAEVKQFFEAAC--GGEVTRLRLLGDH-VH----------S---------------------- 254 (303)
Q Consensus 211 ~~~~~l~V~nL~~~-~t~~~L~~~F~~~~--~G~i~~v~i~~d~-~~----------~---------------------- 254 (303)
...+.|-|-||... +...+|.-+|+.|+ +|.|.+|.|.+.. |+ +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34678999999985 78899999999988 5799999998742 21 1
Q ss_pred -------c---------cEEEEEEcCHHHHHHHHH-hCCceeC--CeeeEEee
Q 022058 255 -------T---------RIAFVEFAVAESAILALN-CSGMVLG--SQPIRVSP 288 (303)
Q Consensus 255 -------~---------g~afV~f~~~e~A~~Ai~-l~g~~~~--g~~l~v~~ 288 (303)
+ -||.|+|.+.+.|.+... .+|.+|. +..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 279999999999999998 9999996 45555555
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.63 E-value=2.2 Score=29.28 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 022058 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187 (303)
Q Consensus 127 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v 187 (303)
.++-++++..+..|+-. +|..+.. | -||.|.+..+|++|.. .+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57889999999999753 2333443 5 6999999999999999 9998888777654
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.24 E-value=1.8 Score=41.71 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=52.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhh-hcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC--CceeCCeeeEE
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS--GMVLGSQPIRV 286 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~-~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~--g~~~~g~~l~v 286 (303)
+.+.++-||.++..++++.+|.. -| ..+.+|.+....+ =||+|.+..||++|.+ |. -.+|-|+.|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~enc-Pk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENC-PKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCC-CCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 66778999999999999999985 34 6888998877664 7999999999999987 53 24555665543
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.42 E-value=0.5 Score=46.25 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=81.0
Q ss_pred hhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCee
Q 022058 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYP 184 (303)
Q Consensus 106 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~ 184 (303)
+..........-++||+|+...+..+-++.+...+|-|.++.... |||..|..+....+|+. ++...++|..
T Consensus 30 ~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 30 IQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 333333444677899999999999999999999999998876643 99999999999999998 8888888877
Q ss_pred EEEeecCCCCCC----------CCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhh
Q 022058 185 VRVLPSKTAILP----------VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236 (303)
Q Consensus 185 i~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~ 236 (303)
+.+......... ....+.|.+. .+-.+|.|+|..+.+......+.-
T Consensus 103 l~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~s------rr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 103 LIENVDEQTIENADKEKSIANKESHKFVPSSS------RRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred hhccchhhhhcCccccccchhhhhcccCCchh------HHHHHhhccccchhHHHHHHHHhc
Confidence 776653221110 0111222211 355667777776666555555443
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=87.03 E-value=1.2 Score=35.56 Aligned_cols=109 Identities=13% Similarity=-0.027 Sum_probs=71.5
Q ss_pred CCCHHHHHHHhh----cCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCCCCCCCCCCCC
Q 022058 127 NITEERLAGLFS----SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202 (303)
Q Consensus 127 ~~t~~~l~~~F~----~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 202 (303)
..+-..|...+. ..|.+.-..+ ..++..+.|.+.+++.+++......+.+..+.+..-.+.. .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l------~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~-------~ 94 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL------GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDF-------N 94 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe------CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccc-------c
Confidence 455666655554 3444332222 2368999999999999999877777888888877643221 1
Q ss_pred CCcccccccccceEEEcCCCCC-CCHHHHHHHhhhhcCcceeEEEEecCC
Q 022058 203 PRSEDEREMCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVTRLRLLGDH 251 (303)
Q Consensus 203 ~~~~~~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~i~~v~i~~d~ 251 (303)
+..... .....=|.|.|||.. .+++-|+.+-+.. |.+..+......
T Consensus 95 ~~~~~~-~~~~vWVri~glP~~~~~~~~~~~i~~~i--G~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEVKF-EHIPVWVRIYGLPLHLWSEEILKAIGSKI--GEPIEVDENTLK 141 (153)
T ss_pred ccccce-eccchhhhhccCCHHHhhhHHHHHHHHhc--CCeEEEEcCCCC
Confidence 111110 011133677899987 7888899999998 999998876554
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.66 E-value=0.55 Score=47.26 Aligned_cols=71 Identities=31% Similarity=0.328 Sum_probs=60.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC--CeeEEEeecCCC
Q 022058 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG--YYPVRVLPSKTA 193 (303)
Q Consensus 119 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~--g~~i~v~~~~~~ 193 (303)
.++.|.+-..+...|.-+++.||.|.+...+++-+ .|.|.|.+.+.|..|+. ++|.++. |-+.+|.+++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44555566677778999999999999999988876 69999999999999998 9998875 888999888654
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.65 E-value=4.4 Score=28.32 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhhhhcC---cceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 224 KVPQAEVKQFFEAACG---GEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 224 ~~t~~~L~~~F~~~~~---G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
.++..+|..++...++ ..|-.+.|... |+||+-... .|..++. |++..+.|+.|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5778888888887620 13445666654 899998765 6677777 9999999999999865
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.26 E-value=0.89 Score=44.58 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=57.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
+..++||+|+...+..+-++.+... | |.|.++.... |||..|..+.....|+. ++-..++|+.|.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~-g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-S-GFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-C-Ccchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4578999999999998888888777 6 9887765543 89999999999999998 8888888888776653
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.60 E-value=29 Score=31.03 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=101.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC---------CCceEEEEEecCHHHHHHHHH-----hC--Cc
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH---------SVLRFAFVEFADEHGARAALN-----LG--GT 178 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------~~~G~~fV~f~~~~~A~~Ai~-----l~--g~ 178 (303)
..|.|.+.|+..+++--.+-..|-.||+|++|.++.+.. +..-...+-|-+.+.+..... |. .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999999998661 124568888888777655432 22 13
Q ss_pred ccCCeeEEEeecCCCCCC----CC-CCCC-----CC-c-ccccccccceEEEcCCCCCCCHHH-HHHHh---hhhcCc--
Q 022058 179 MLGYYPVRVLPSKTAILP----VN-PTFL-----PR-S-EDEREMCSRTVYCTNIDKKVPQAE-VKQFF---EAACGG-- 240 (303)
Q Consensus 179 ~~~g~~i~v~~~~~~~~~----~~-~~~~-----~~-~-~~~~~~~~~~l~V~nL~~~~t~~~-L~~~F---~~~~~G-- 240 (303)
.+....|.+.+..-.... .. ..+. +. . +-...+..+.|.|. +...+.+++ +.+.+ ..- +
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~--~n~ 170 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS--NNK 170 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC--CCc
Confidence 344566666654321110 00 0000 00 0 00112234566663 233343333 22222 111 2
Q ss_pred --ceeEEEEecCCC----CcccEEEEEEcCHHHHHHHHH-h--CCceeC-CeeeEEeec
Q 022058 241 --EVTRLRLLGDHV----HSTRIAFVEFAVAESAILALN-C--SGMVLG-SQPIRVSPS 289 (303)
Q Consensus 241 --~i~~v~i~~d~~----~~~g~afV~f~~~e~A~~Ai~-l--~g~~~~-g~~l~v~~a 289 (303)
-+++|.|+.... =++.||.++|-+...|...+. | ++...+ .+..-|...
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~ 229 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQ 229 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEecc
Confidence 467788886532 257799999999999988886 4 444443 344445443
No 216
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.85 E-value=2.3 Score=32.71 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=32.0
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCH-HHHHHHHH
Q 022058 118 TVYVSDIDQN---------ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE-HGARAALN 174 (303)
Q Consensus 118 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~-~~A~~Ai~ 174 (303)
++.|-|+|.. .+.+.|++.|+.|.++. ++.+.+..++.|++.|.|... ..-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3556666543 35578999999999875 666677777899999999873 33344554
No 217
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.73 E-value=6.2 Score=36.61 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=47.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHh
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC 274 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l 274 (303)
...|-|+++|.....+||...|+.|. +.=-+|+++-|. .+|-.|.+...|..|+.|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq-~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQ-NKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhh-cCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 36788999999999999999999983 444567777776 699999999999999986
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.54 E-value=13 Score=25.85 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHhhcCCc-----eeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 126 QNITEERLAGLFSSCGQ-----VVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 126 ~~~t~~~l~~~F~~~G~-----i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
..++..+|-.++..-+. |-.+.+.. -|.||+-... .|..++. |++..+.|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788888888876643 45666642 3899998764 7888887 9999999999999753
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.50 E-value=12 Score=34.81 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=47.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCce-eEEEEeeCCCCCceEEEEEecCHHHHHHHHHh
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l 175 (303)
......|-|-++|.....+||-..|+.|+.- -+|.++-|. .+|-.|++...|..|+.+
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 3356779999999999999999999999753 456666554 599999999999999996
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.96 E-value=7.5 Score=34.47 Aligned_cols=47 Identities=9% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCce-eEEEEeeCCCCCceEEEEEecCH
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDPHSVLRFAFVEFADE 166 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~~~G~~fV~f~~~ 166 (303)
..-|+++|||.++--.||+..+...|-+ .++.+ .++.|-||.+|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCc
Confidence 3449999999999999999999877743 45544 34567899999874
No 221
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.47 E-value=4.9 Score=35.80 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=33.3
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCC
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYY 58 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~ 58 (303)
.|...|+..+++--.+...|.+||+|++|.++.+.
T Consensus 17 SLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 17 SLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred HHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 58899999999999999999999999999999988
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.98 E-value=45 Score=32.75 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=57.1
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcC----CceeEEEEeeCCC-----------CC-----------------------
Q 022058 115 VRRTVYVSDIDQN-ITEERLAGLFSSC----GQVVDCRVCGDPH-----------SV----------------------- 155 (303)
Q Consensus 115 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~~-----------~~----------------------- 155 (303)
..+.|-|-|+.|. +...+|.-+|+.| |.|.+|.|....- ++
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4677999999995 7889999998855 5899998844210 01
Q ss_pred ---------------ceEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEee
Q 022058 156 ---------------LRFAFVEFADEHGARAALN-LGGTMLGY--YPVRVLP 189 (303)
Q Consensus 156 ---------------~G~~fV~f~~~~~A~~Ai~-l~g~~~~g--~~i~v~~ 189 (303)
--||.|+|.+.+.|.+... ++|..+.. ..|-+.+
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1479999999999999998 99999974 4444444
No 223
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.83 E-value=12 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=18.2
Q ss_pred HHHHHHHhccCCcceeeeccCCC
Q 022058 37 QKLVDMFTKLNPLAKEFFPSYYH 59 (303)
Q Consensus 37 ~~L~~~F~~~G~v~~v~i~~~~~ 59 (303)
.+||+.|++.|+|.-+.+-.-..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS 31 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYES 31 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccccc
Confidence 67999999999998877654433
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=49.06 E-value=12 Score=28.52 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHhh---cCCceeEEEEeeCC--CCCceEEEEEecCH
Q 022058 124 IDQNITEERLAGLFS---SCGQVVDCRVCGDP--HSVLRFAFVEFADE 166 (303)
Q Consensus 124 lp~~~t~~~l~~~F~---~~G~i~~~~i~~~~--~~~~G~~fV~f~~~ 166 (303)
-|+.+|-.+|+++|+ .|-.|..-.+.+|. .++-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 578999999999998 45555544455443 23556788888754
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.51 E-value=23 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHH-HHHHH
Q 022058 225 VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESA-ILALN 273 (303)
Q Consensus 225 ~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A-~~Ai~ 273 (303)
.+.+.|.+.|..| ..+ .++.+.+....+|+++|.|.+.-.. ..|+.
T Consensus 29 ~~~~~l~~~l~~f--~p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEF--NPL-KVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH-----S-EEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhc--CCc-eeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3558899999999 554 4666666556788999999774332 33443
No 226
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.72 E-value=17 Score=21.69 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHhccCC
Q 022058 33 EFTVQKLVDMFTKLNP 48 (303)
Q Consensus 33 ~~t~~~L~~~F~~~G~ 48 (303)
++++++|++.|.+.+.
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 5789999999998653
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=41.60 E-value=30 Score=24.97 Aligned_cols=45 Identities=9% Similarity=-0.072 Sum_probs=35.4
Q ss_pred CCcccccchhhhHHHHHHHHhc-cC-CcceeeeccCCCCCCCceeee
Q 022058 24 NLETKKSESEFTVQKLVDMFTK-LN-PLAKEFFPSYYHQHTDHHFSV 68 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~~v~f 68 (303)
+-++-..+...|..++++.+++ || +|.+|+......+-...||.+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L 68 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKL 68 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEe
Confidence 5677788899999999999998 67 688888877664333339999
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.00 E-value=93 Score=21.99 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=39.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHH
Q 022058 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271 (303)
Q Consensus 215 ~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~A 271 (303)
.-|+-.++...+..+|++.++..++=.|.+|....-++ ..--|||++..-+.|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CceEEEEEECCCCcHHHH
Confidence 34555678899999999999986533677776555442 222599999887777553
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=39.10 E-value=33 Score=32.14 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=33.0
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHhhhhc--CcceeEEEEecC
Q 022058 211 MCSRTVYCTNIDKK-VPQAEVKQFFEAAC--GGEVTRLRLLGD 250 (303)
Q Consensus 211 ~~~~~l~V~nL~~~-~t~~~L~~~F~~~~--~G~i~~v~i~~d 250 (303)
.+.+.|-|-||... +...+|..+|+.|| ||.+..|.|.+.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34578889999985 77899999999888 589999988774
No 230
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.98 E-value=18 Score=32.01 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCCcccccchhh------------hHHHHHHHHhccCCcceeeecc
Q 022058 23 NNLETKKSESEF------------TVQKLVDMFTKLNPLAKEFFPS 56 (303)
Q Consensus 23 ~~~~~~nl~~~~------------t~~~L~~~F~~~G~v~~v~i~~ 56 (303)
.+|....||..+ +++-|+..|+.||+|..|.||-
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 356666666543 6788999999999999998874
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.64 E-value=1.1e+02 Score=21.95 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHH
Q 022058 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILAL 272 (303)
Q Consensus 216 l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai 272 (303)
-|.--.+...+..+|++.++..++=.|.+|....-++ ..--|+|++..-++|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHH
Confidence 4444578889999999999996534777777665542 2235999999887776543
No 232
>PF14893 PNMA: PNMA
Probab=36.93 E-value=78 Score=29.12 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFS 138 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~ 138 (303)
..+.|-|.+||.++++++|++.+.
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHH
Confidence 567899999999999999888765
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.25 E-value=39 Score=28.10 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCC--H---HHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCe-eeEE
Q 022058 214 RTVYCTNIDKKVP--Q---AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQ-PIRV 286 (303)
Q Consensus 214 ~~l~V~nL~~~~t--~---~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~-~l~v 286 (303)
.++.+.+++..+- . .....+|.+| -+..-..+++. .+..-|.|.+++.|..|.. +++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~--n~~~~fq~lrs----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQI--NEDATFQLLRS----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhh--CcchHHHHHHh----hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3455666665432 2 2233445554 33333334433 3478889999999999987 999999887 8888
Q ss_pred eecCCCCCC
Q 022058 287 SPSKTPVRP 295 (303)
Q Consensus 287 ~~a~~~~~~ 295 (303)
-++.+....
T Consensus 85 yfaQ~~~~~ 93 (193)
T KOG4019|consen 85 YFAQPGHPE 93 (193)
T ss_pred EEccCCCcc
Confidence 777665443
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.15 E-value=1e+02 Score=27.57 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=33.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcce-eEEEEecCCCCcccEEEEEEcC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEV-TRLRLLGDHVHSTRIAFVEFAV 264 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i-~~v~i~~d~~~~~g~afV~f~~ 264 (303)
.-|+++||+.++.-.||+....+. |.+ .++... .+.|-||+.|.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~--~~~pm~iswk----g~~~k~flh~~~ 376 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKR--ECTPMSISWK----GHFGKCFLHFGN 376 (396)
T ss_pred cceeeccCccccchHHHHHHHHhc--CCCceeEeee----cCCcceeEecCC
Confidence 459999999999999999998887 533 233332 234579999966
No 235
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=34.07 E-value=90 Score=22.61 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEec
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFA 164 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~ 164 (303)
...||||+++..+-+.-...+.+..+.=.-+.+..+.+ ..||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 45699999998887776666666555544444444433 7799998773
No 236
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.34 E-value=30 Score=25.22 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHh
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLF 137 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F 137 (303)
....+++|-|.|||..+++++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34568899999999999999999764
No 237
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.81 E-value=31 Score=28.57 Aligned_cols=71 Identities=15% Similarity=0.022 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC---CCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
..+++|.. |.+...++|.++-+ |.+..+.+-.... +.+|--||+|.+.++|.++++-++......+|...+
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKRSG 183 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHHHH
Confidence 46677777 33333334444433 7888877755332 358999999999999999997554444444444443
No 238
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.23 E-value=66 Score=29.91 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC-ceeEEEEeeCCCC----CceEEEEEecCHHHHHHHHH-hCCccc
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHS----VLRFAFVEFADEHGARAALN-LGGTML 180 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~----~~G~~fV~f~~~~~A~~Ai~-l~g~~~ 180 (303)
....|.|.+||+.+++++|.+-...+- .+.-..+.....+ -.+.+||.|...++...... ++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456789999999999999988777654 2333333321111 25789999999999888777 877665
No 239
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.60 E-value=1e+02 Score=29.98 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=47.5
Q ss_pred CEEEEcCCCCCC---CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeE
Q 022058 117 RTVYVSDIDQNI---TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185 (303)
Q Consensus 117 ~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i 185 (303)
.-=.||||+.-. .-..+.++-++||+|..+++=. .-.|.-.+.+.|..|+.-++..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 335688887543 3456677777999999887721 2478889999999999988999999986
No 240
>smart00457 MACPF membrane-attack complex / perforin.
Probab=26.31 E-value=38 Score=28.28 Aligned_cols=28 Identities=4% Similarity=0.158 Sum_probs=23.9
Q ss_pred ccccchhhhHHHHHHHHhccCC--cceeee
Q 022058 27 TKKSESEFTVQKLVDMFTKLNP--LAKEFF 54 (303)
Q Consensus 27 ~~nl~~~~t~~~L~~~F~~~G~--v~~v~i 54 (303)
+++||..++..+...+|+.||+ |+++.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 5699999999999999999998 556555
No 241
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.77 E-value=89 Score=27.67 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=27.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEee
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 150 (303)
.....|+|||++++..-|..++...-.+....++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 44578999999999999999998766665554443
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=25.02 E-value=86 Score=29.17 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-C---CcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-V---HSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~---~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
..+.|.+||+..++.+|.+-..+|- -.+.+..+.+.. + .-.+.++|.|.+.++...-.. .+|+.|-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 5678999999999999988888762 345555555322 1 236689999999999655555 7888763
No 243
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.54 E-value=61 Score=28.13 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEE
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 148 (303)
..+.++|+-|+|..++++.|..+.+.+|-+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 35788999999999999999999999996655443
No 244
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=23.86 E-value=43 Score=27.94 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=19.7
Q ss_pred ccccchhhhHHH---HHHHHhccCC--cceeee
Q 022058 27 TKKSESEFTVQK---LVDMFTKLNP--LAKEFF 54 (303)
Q Consensus 27 ~~nl~~~~t~~~---L~~~F~~~G~--v~~v~i 54 (303)
+.+||...+..+ +.++|..||. |+++.+
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~v~~~~l 85 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHYVTSVTL 85 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEEEEEEEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEEEEEEEE
Confidence 788999988888 8899999998 444443
No 245
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.78 E-value=93 Score=21.12 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=25.2
Q ss_pred CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEE
Q 022058 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161 (303)
Q Consensus 129 t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV 161 (303)
-+..|...|-.-..|.++.+.-.+.-.+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 355688888888899999888766556677776
No 246
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.43 E-value=1.5e+02 Score=21.98 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=30.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~ 165 (303)
...||||+++..+-+.-...+-+.++.= ++.++....+..||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcCCCCCCcEEEecCC
Confidence 5569999988777666555555555553 333333333445999988765
No 247
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.94 E-value=2.5e+02 Score=22.46 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHH
Q 022058 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 215 ~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~ 270 (303)
.-|+--++...+..+|++.++..|+-.|..|..+.-++.- --|||.+....+|..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aid 137 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALD 137 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHH
Confidence 3455557888999999999998654477777665554311 259999987766543
No 248
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=12 Score=35.16 Aligned_cols=83 Identities=6% Similarity=-0.157 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
...++..+|...+++++.-+|+.| |.|..+.+.+-. +-..-.+||+-.. ++|..+|+ +.-..+.|-.+++..++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~--~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDP--SIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCC--cceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 345678899999999999999999 999988877653 2233456666543 45667776 66667788888888776
Q ss_pred CCCCCCCCC
Q 022058 291 TPVRPRVTR 299 (303)
Q Consensus 291 ~~~~~r~~r 299 (303)
...-.|..|
T Consensus 81 ~s~~~r~k~ 89 (572)
T KOG4365|consen 81 SSSEKRSKN 89 (572)
T ss_pred hhhhhhhcC
Confidence 655555443
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.48 E-value=24 Score=34.37 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=54.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
.++++++|++++++-.+|..++..+ ..+..+-+-.+. ..-..+++|+|.---...-|.. ||+..+....+.-.-
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i--~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~e- 307 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGI--PGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSESE- 307 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccC--chheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccccccc-
Confidence 4678999999999999999999987 556665555442 2344578999976444444443 667666665544332
Q ss_pred CCCCCCCCCCCC
Q 022058 290 KTPVRPRVTRPG 301 (303)
Q Consensus 290 ~~~~~~r~~r~~ 301 (303)
.+.-+|+.|++
T Consensus 308 -n~~i~rrvr~~ 318 (648)
T KOG2295|consen 308 -NPDITRRVRPI 318 (648)
T ss_pred -ccCccceeccC
Confidence 22334555544
No 250
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.03 E-value=69 Score=28.35 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=27.2
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeecc
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPS 56 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~ 56 (303)
...|+||||.+|-.=|.++++..-.+.++.++-
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 567999999999999999999877776665543
No 251
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.99 E-value=1.2e+02 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=18.9
Q ss_pred cEEEEEEcCHHHHHHHHH-hCCcee
Q 022058 256 RIAFVEFAVAESAILALN-CSGMVL 279 (303)
Q Consensus 256 g~afV~f~~~e~A~~Ai~-l~g~~~ 279 (303)
.+.+|.|.+..+|.+|-+ |....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 378999999999999887 654433
No 252
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=3.7e+02 Score=20.26 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=30.5
Q ss_pred HHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH
Q 022058 132 RLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 132 ~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~ 174 (303)
+|..+.+..| |..-.|..|..++.=||++++.+.+..-++|.
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 5667778887 45566666665667799999997777766664
No 253
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=25 Score=33.23 Aligned_cols=72 Identities=6% Similarity=-0.188 Sum_probs=54.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCC--ceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~--~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.-|+..+|...+++++.-+|..||-|.-+.+.+..+++ +-.+||+-.+ .++..+|. +.-+.+.|..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 35677899999999999999999999887776655543 4467887765 56777776 7666777777766654
Done!