Query 022058
Match_columns 303
No_of_seqs 256 out of 2585
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 4.1E-44 1.4E-48 320.9 21.2 245 20-292 39-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.9E-43 6.5E-48 315.4 21.1 241 20-294 20-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 8.5E-36 2.9E-40 255.4 20.5 164 115-292 14-181 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 6.9E-35 2.4E-39 245.4 20.8 180 112-301 9-192 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 7.4E-35 2.5E-39 238.4 20.3 161 117-291 1-166 (166)
6 2qfj_A FBP-interacting repress 100.0 1.1E-34 3.7E-39 247.9 15.0 177 115-296 27-209 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-33 4.6E-38 231.6 20.2 159 115-289 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 2.9E-33 9.8E-38 229.1 21.7 158 116-289 2-167 (167)
9 2cjk_A Nuclear polyadenylated 100.0 1.2E-33 4.1E-38 231.9 15.0 161 115-292 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1E-32 3.5E-37 227.7 20.5 161 115-290 2-175 (175)
11 3tyt_A Heterogeneous nuclear r 100.0 1.3E-32 4.4E-37 234.2 19.9 170 115-289 3-204 (205)
12 2yh0_A Splicing factor U2AF 65 100.0 1.1E-31 3.8E-36 226.1 20.4 174 115-294 3-196 (198)
13 1fje_B Nucleolin RBD12, protei 100.0 8.9E-33 3E-37 228.7 13.1 164 112-292 9-174 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 1E-31 3.4E-36 221.4 18.5 155 115-289 3-171 (172)
15 2adc_A Polypyrimidine tract-bi 100.0 3.8E-31 1.3E-35 228.9 21.7 173 113-293 31-229 (229)
16 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-31 5.6E-36 225.6 18.0 171 115-293 2-198 (198)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-31 6E-36 238.8 18.8 160 112-294 37-199 (292)
18 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-30 3.8E-35 232.4 22.4 173 112-290 5-281 (282)
19 4f02_A Polyadenylate-binding p 100.0 4.6E-32 1.6E-36 232.1 9.9 156 23-192 16-180 (213)
20 3smz_A Protein raver-1, ribonu 100.0 8.4E-30 2.9E-34 227.0 21.5 154 114-294 20-177 (284)
21 3sde_A Paraspeckle component 1 100.0 7.5E-30 2.5E-34 225.0 19.4 156 112-293 18-180 (261)
22 3md3_A Nuclear and cytoplasmic 100.0 1.9E-30 6.4E-35 212.1 12.6 154 24-191 2-165 (166)
23 3nmr_A Cugbp ELAV-like family 100.0 8.7E-30 3E-34 210.1 11.9 155 23-191 4-175 (175)
24 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-29 5.4E-34 207.3 12.4 155 21-190 2-168 (168)
25 2cjk_A Nuclear polyadenylated 100.0 3.5E-30 1.2E-34 211.1 8.3 155 22-192 3-165 (167)
26 2qfj_A FBP-interacting repress 100.0 1.9E-29 6.5E-34 215.3 12.3 162 20-195 26-207 (216)
27 1l3k_A Heterogeneous nuclear r 100.0 6.2E-29 2.1E-33 209.0 13.6 158 21-193 12-183 (196)
28 1fxl_A Paraneoplastic encephal 100.0 6.7E-29 2.3E-33 203.0 12.2 154 22-190 2-167 (167)
29 2g4b_A Splicing factor U2AF 65 99.9 3E-27 1E-31 194.6 12.0 149 22-190 4-171 (172)
30 3tyt_A Heterogeneous nuclear r 99.9 3.4E-27 1.2E-31 200.7 10.5 153 22-190 4-204 (205)
31 1fje_B Nucleolin RBD12, protei 99.9 1.5E-27 5.1E-32 197.2 7.0 155 20-192 11-173 (175)
32 2yh0_A Splicing factor U2AF 65 99.9 4.2E-27 1.4E-31 198.0 8.6 154 22-193 4-194 (198)
33 3pgw_A U1-A; protein-RNA compl 99.9 6.7E-26 2.3E-30 201.5 13.4 153 22-191 9-281 (282)
34 2adc_A Polypyrimidine tract-bi 99.9 9.1E-26 3.1E-30 195.0 13.5 154 20-192 32-227 (229)
35 1qm9_A Polypyrimidine tract-bi 99.9 7.5E-26 2.6E-30 190.8 11.7 152 22-192 3-196 (198)
36 2kn4_A Immunoglobulin G-bindin 99.9 3.6E-24 1.2E-28 174.4 15.6 147 145-294 2-152 (158)
37 3sde_A Paraspeckle component 1 99.9 7.6E-25 2.6E-29 192.9 11.6 153 21-193 21-179 (261)
38 4f25_A Polyadenylate-binding p 99.9 5.3E-24 1.8E-28 164.4 10.1 108 115-228 4-112 (115)
39 2i2y_A Fusion protein consists 99.9 1.7E-22 5.8E-27 163.2 14.3 141 147-293 4-149 (150)
40 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-20 8.2E-25 139.9 10.8 78 115-192 18-98 (99)
41 4fxv_A ELAV-like protein 1; RN 99.8 3E-20 1E-24 139.4 11.0 78 212-291 18-98 (99)
42 2kn4_A Immunoglobulin G-bindin 99.8 8.4E-20 2.9E-24 148.4 11.2 129 51-193 2-150 (158)
43 4f25_A Polyadenylate-binding p 99.8 3.8E-19 1.3E-23 137.0 11.0 79 213-293 5-84 (115)
44 2lea_A Serine/arginine-rich sp 99.8 1.6E-19 5.4E-24 143.2 8.7 125 157-298 5-133 (135)
45 3s8s_A Histone-lysine N-methyl 99.8 5.1E-19 1.7E-23 135.2 11.2 79 114-192 4-85 (110)
46 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.2E-19 1.4E-23 145.5 10.8 136 161-298 11-158 (165)
47 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.3E-18 7.9E-23 129.8 13.8 86 211-298 13-99 (103)
48 2lxi_A RNA-binding protein 10; 99.8 2.1E-19 7.2E-24 132.6 7.7 79 214-294 2-85 (91)
49 1whw_A Hypothetical protein ri 99.8 2E-18 6.7E-23 129.2 12.2 88 212-301 7-97 (99)
50 3lqv_A PRE-mRNA branch site pr 99.8 3.6E-19 1.2E-23 137.0 8.4 103 113-240 5-108 (115)
51 2hvz_A Splicing factor, argini 99.8 4.6E-19 1.6E-23 133.2 8.5 99 117-222 1-100 (101)
52 2cq3_A RNA-binding protein 9; 99.8 3.9E-18 1.3E-22 128.5 13.7 84 211-296 13-97 (103)
53 2d9p_A Polyadenylate-binding p 99.8 1.8E-18 6.1E-23 130.4 11.8 84 211-296 13-97 (103)
54 2dnz_A Probable RNA-binding pr 99.8 2.8E-18 9.7E-23 127.2 12.6 86 212-299 4-92 (95)
55 2lxi_A RNA-binding protein 10; 99.8 2.2E-19 7.6E-24 132.5 6.4 78 116-193 1-83 (91)
56 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-18 5.3E-23 130.5 11.1 88 212-301 11-101 (102)
57 2dnh_A Bruno-like 5, RNA bindi 99.8 2.6E-18 8.8E-23 129.9 12.4 88 211-301 13-105 (105)
58 1x5t_A Splicing factor 3B subu 99.8 1.9E-18 6.6E-23 128.4 11.3 87 212-301 4-94 (96)
59 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-18 9.3E-23 129.4 12.1 82 112-193 11-93 (103)
60 2cpz_A CUG triplet repeat RNA- 99.8 3.1E-18 1.1E-22 131.7 12.6 85 210-296 22-109 (115)
61 2dgs_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 128.0 12.3 83 212-296 9-93 (99)
62 2cq3_A RNA-binding protein 9; 99.8 4E-18 1.4E-22 128.4 12.9 83 112-194 11-94 (103)
63 2lkz_A RNA-binding protein 5; 99.8 4.5E-19 1.5E-23 131.8 7.2 78 115-192 8-94 (95)
64 2dgo_A Cytotoxic granule-assoc 99.8 5.5E-18 1.9E-22 130.3 13.6 87 211-299 13-102 (115)
65 3s8s_A Histone-lysine N-methyl 99.8 2.2E-18 7.5E-23 131.7 11.3 78 212-291 5-85 (110)
66 2cpf_A RNA binding motif prote 99.8 2.5E-18 8.5E-23 128.4 11.2 85 212-298 4-94 (98)
67 1s79_A Lupus LA protein; RRM, 99.8 1.1E-18 3.6E-23 131.8 8.7 80 112-191 7-87 (103)
68 2dgo_A Cytotoxic granule-assoc 99.8 6E-18 2E-22 130.1 12.9 84 111-194 10-96 (115)
69 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.9E-23 129.5 10.3 84 212-297 11-97 (102)
70 3p5t_L Cleavage and polyadenyl 99.8 5.2E-19 1.8E-23 130.1 6.4 77 117-193 2-83 (90)
71 2cqd_A RNA-binding region cont 99.8 9E-18 3.1E-22 129.3 13.6 89 210-301 14-105 (116)
72 2lkz_A RNA-binding protein 5; 99.8 7.3E-19 2.5E-23 130.7 7.1 78 212-291 8-94 (95)
73 2cph_A RNA binding motif prote 99.8 5.9E-18 2E-22 128.3 12.3 85 210-296 12-101 (107)
74 2dgv_A HnRNP M, heterogeneous 99.8 3.3E-18 1.1E-22 126.1 10.6 82 212-295 7-89 (92)
75 3p5t_L Cleavage and polyadenyl 99.8 5.2E-19 1.8E-23 130.1 6.2 81 214-296 2-87 (90)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.4E-18 8.4E-23 124.8 9.7 78 114-191 5-85 (85)
77 3md1_A Nuclear and cytoplasmic 99.8 3.9E-18 1.3E-22 123.2 10.7 76 117-192 2-80 (83)
78 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.8E-18 9.4E-23 125.1 9.8 78 115-192 5-85 (87)
79 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.4E-18 1.5E-22 124.1 10.8 79 212-292 5-86 (87)
80 2dgs_A DAZ-associated protein 99.8 7E-18 2.4E-22 126.2 12.2 82 112-193 6-89 (99)
81 2fy1_A RNA-binding motif prote 99.8 4.9E-18 1.7E-22 131.0 11.6 86 212-299 6-93 (116)
82 2dnz_A Probable RNA-binding pr 99.8 7.6E-18 2.6E-22 124.9 12.2 81 114-194 3-86 (95)
83 2dnm_A SRP46 splicing factor; 99.8 3.2E-18 1.1E-22 129.0 10.2 81 212-294 12-95 (103)
84 2cq0_A Eukaryotic translation 99.8 4E-18 1.4E-22 128.5 10.7 82 112-193 11-95 (103)
85 1x4h_A RNA-binding protein 28; 99.8 7.4E-18 2.5E-22 128.6 12.3 87 211-299 13-108 (111)
86 1sjq_A Polypyrimidine tract-bi 99.8 2.9E-18 9.9E-23 129.2 9.8 79 112-194 12-93 (105)
87 2cq0_A Eukaryotic translation 99.8 5.7E-18 1.9E-22 127.6 11.4 82 211-294 13-97 (103)
88 3s7r_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 124.0 10.6 79 112-190 7-87 (87)
89 3md1_A Nuclear and cytoplasmic 99.8 6.8E-18 2.3E-22 121.9 11.3 77 214-292 2-81 (83)
90 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-18 1.4E-22 126.8 10.4 79 114-193 7-90 (96)
91 1x5u_A Splicing factor 3B subu 99.8 8.4E-18 2.9E-22 127.1 12.3 84 211-296 13-99 (105)
92 2do4_A Squamous cell carcinoma 99.8 5.7E-18 1.9E-22 126.9 11.0 82 112-193 13-96 (100)
93 2lea_A Serine/arginine-rich sp 99.8 9.9E-19 3.4E-23 138.6 7.2 106 87-194 16-128 (135)
94 2err_A Ataxin-2-binding protei 99.8 3.3E-18 1.1E-22 130.5 9.8 82 112-193 25-107 (109)
95 2cqc_A Arginine/serine-rich sp 99.8 4.3E-18 1.5E-22 126.2 10.1 80 112-191 11-93 (95)
96 1whw_A Hypothetical protein ri 99.8 7.2E-18 2.5E-22 126.1 11.4 82 113-194 5-89 (99)
97 2do4_A Squamous cell carcinoma 99.8 1E-17 3.4E-22 125.6 12.2 81 211-293 15-97 (100)
98 2ywk_A Putative RNA-binding pr 99.8 3.9E-18 1.3E-22 126.5 9.7 80 112-191 12-93 (95)
99 2dnh_A Bruno-like 5, RNA bindi 99.8 8.8E-18 3E-22 127.0 11.8 82 113-194 12-98 (105)
100 2wbr_A GW182, gawky, LD47780P; 99.8 2.8E-18 9.6E-23 123.9 8.5 72 115-190 6-78 (89)
101 2e5h_A Zinc finger CCHC-type a 99.8 4.4E-18 1.5E-22 125.9 9.9 80 112-191 12-94 (94)
102 2cpz_A CUG triplet repeat RNA- 99.8 7.9E-18 2.7E-22 129.5 11.5 83 112-194 21-106 (115)
103 1x5u_A Splicing factor 3B subu 99.7 6.3E-18 2.2E-22 127.8 10.7 83 112-194 11-96 (105)
104 2dgv_A HnRNP M, heterogeneous 99.7 8.2E-18 2.8E-22 124.0 11.0 81 113-193 5-86 (92)
105 2d9p_A Polyadenylate-binding p 99.7 8.4E-18 2.9E-22 126.7 11.2 83 112-194 11-94 (103)
106 2cpf_A RNA binding motif prote 99.7 6.3E-18 2.1E-22 126.2 10.4 81 114-194 3-89 (98)
107 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-17 3.8E-22 124.5 11.7 80 212-294 8-92 (96)
108 2i2y_A Fusion protein consists 99.7 2.9E-18 9.8E-23 138.2 9.0 77 113-192 70-147 (150)
109 1x5t_A Splicing factor 3B subu 99.7 7E-18 2.4E-22 125.4 10.4 80 114-193 3-86 (96)
110 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.2E-18 2.1E-22 122.7 9.9 77 212-290 6-85 (85)
111 2x1f_A MRNA 3'-END-processing 99.7 6.8E-18 2.3E-22 125.6 10.3 78 116-193 2-82 (96)
112 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-17 4.2E-22 126.4 11.8 84 211-296 11-100 (106)
113 2dnm_A SRP46 splicing factor; 99.7 5.2E-18 1.8E-22 127.8 9.7 82 112-193 9-93 (103)
114 3ns6_A Eukaryotic translation 99.7 1.9E-18 6.6E-23 129.7 7.2 78 114-191 4-91 (100)
115 2x1f_A MRNA 3'-END-processing 99.7 1E-17 3.4E-22 124.7 11.0 80 213-294 2-84 (96)
116 2la6_A RNA-binding protein FUS 99.7 7.9E-18 2.7E-22 125.9 10.5 79 112-190 9-98 (99)
117 1x4a_A Splicing factor, argini 99.7 2.6E-17 8.7E-22 125.3 13.5 84 211-297 20-104 (109)
118 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-17 4.6E-22 125.8 11.8 83 212-297 14-99 (104)
119 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.5E-18 2.2E-22 127.0 10.0 82 113-194 9-93 (102)
120 2fy1_A RNA-binding motif prote 99.7 1.3E-17 4.5E-22 128.6 11.9 82 113-194 4-87 (116)
121 2err_A Ataxin-2-binding protei 99.7 5.9E-18 2E-22 129.0 9.6 81 210-292 26-107 (109)
122 2dng_A Eukaryotic translation 99.7 1.9E-17 6.5E-22 124.8 12.3 83 211-296 13-97 (103)
123 2jrs_A RNA-binding protein 39; 99.7 8.5E-18 2.9E-22 128.0 10.5 81 112-192 22-105 (108)
124 1oo0_B CG8781-PA, drosophila Y 99.7 9.9E-18 3.4E-22 127.8 10.8 83 210-294 23-108 (110)
125 1oo0_B CG8781-PA, drosophila Y 99.7 6.1E-18 2.1E-22 129.0 9.6 80 114-193 24-106 (110)
126 1x5s_A Cold-inducible RNA-bind 99.7 8E-18 2.7E-22 126.5 10.1 82 113-194 9-93 (102)
127 1p27_B RNA-binding protein 8A; 99.7 8.4E-18 2.9E-22 127.3 10.2 80 114-193 21-103 (106)
128 2cph_A RNA binding motif prote 99.7 1.3E-17 4.5E-22 126.4 11.2 82 112-193 11-97 (107)
129 2cqc_A Arginine/serine-rich sp 99.7 2E-17 6.7E-22 122.6 11.8 79 211-291 13-94 (95)
130 1x4b_A Heterogeneous nuclear r 99.7 2.3E-17 7.9E-22 127.0 12.6 88 211-300 25-114 (116)
131 2do0_A HnRNP M, heterogeneous 99.7 2.6E-17 8.9E-22 126.2 12.8 80 212-293 14-95 (114)
132 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4E-22 126.5 10.6 81 211-293 21-104 (106)
133 3ex7_B RNA-binding protein 8A; 99.7 7.8E-18 2.7E-22 131.6 9.9 88 211-300 20-110 (126)
134 2cpe_A RNA-binding protein EWS 99.7 1.6E-17 5.3E-22 127.3 11.4 84 211-296 13-107 (113)
135 2dhg_A TRNA selenocysteine ass 99.7 1.1E-17 3.9E-22 126.1 10.4 84 212-297 8-95 (104)
136 2div_A TRNA selenocysteine ass 99.7 1.1E-17 3.6E-22 125.2 10.1 81 113-193 6-94 (99)
137 3ucg_A Polyadenylate-binding p 99.7 1.2E-17 4.1E-22 122.2 10.2 77 116-192 6-84 (89)
138 4a8x_A RNA-binding protein wit 99.7 1E-17 3.5E-22 122.2 9.8 80 212-293 3-86 (88)
139 2jrs_A RNA-binding protein 39; 99.7 1.2E-17 4.2E-22 127.1 10.5 81 210-292 23-106 (108)
140 1x4h_A RNA-binding protein 28; 99.7 1.6E-17 5.3E-22 126.8 11.1 82 112-193 11-101 (111)
141 1x4g_A Nucleolysin TIAR; struc 99.7 2.9E-17 1E-21 125.0 12.6 86 210-301 22-108 (109)
142 3ucg_A Polyadenylate-binding p 99.7 1.8E-17 6E-22 121.4 10.9 79 212-292 5-85 (89)
143 2e5h_A Zinc finger CCHC-type a 99.7 2.3E-17 7.7E-22 122.1 11.6 77 212-290 15-94 (94)
144 2mss_A Protein (musashi1); RNA 99.7 4.4E-18 1.5E-22 120.6 7.2 73 118-190 1-75 (75)
145 1x4a_A Splicing factor, argini 99.7 2.8E-17 9.4E-22 125.2 12.0 81 112-193 18-99 (109)
146 2fc9_A NCL protein; structure 99.7 2E-17 6.8E-22 124.2 11.0 86 211-301 13-100 (101)
147 2ywk_A Putative RNA-binding pr 99.7 1.9E-17 6.6E-22 122.7 10.8 78 212-291 15-94 (95)
148 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5E-22 124.4 10.1 81 212-294 8-96 (99)
149 4a8x_A RNA-binding protein wit 99.7 1.3E-17 4.5E-22 121.7 9.4 78 115-192 3-84 (88)
150 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4.2E-22 125.9 9.5 78 212-291 10-88 (103)
151 3pgw_S U1-70K; protein-RNA com 99.7 8.5E-18 2.9E-22 158.0 10.6 80 114-193 100-182 (437)
152 3r27_A HnRNP L, heterogeneous 99.7 1.6E-17 5.4E-22 123.9 9.9 76 114-193 19-97 (100)
153 2do0_A HnRNP M, heterogeneous 99.7 5E-17 1.7E-21 124.6 13.1 81 113-193 12-94 (114)
154 2cqd_A RNA-binding region cont 99.7 2.9E-17 1E-21 126.5 11.7 81 112-193 13-96 (116)
155 2dhg_A TRNA selenocysteine ass 99.7 2.2E-17 7.6E-22 124.5 10.7 82 112-193 5-90 (104)
156 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-17 6.1E-22 125.5 10.2 83 112-194 9-97 (106)
157 2cq1_A PTB-like protein L; RRM 99.7 3.7E-17 1.3E-21 122.8 11.8 77 114-194 13-92 (101)
158 2dng_A Eukaryotic translation 99.7 2.7E-17 9.2E-22 123.9 11.1 80 113-193 12-93 (103)
159 2cqg_A TDP-43, TAR DNA-binding 99.7 7.1E-17 2.4E-21 121.5 13.4 87 211-300 13-101 (103)
160 2jwn_A Embryonic polyadenylate 99.7 2E-17 6.9E-22 128.8 10.6 84 210-295 33-118 (124)
161 2khc_A Testis-specific RNP-typ 99.7 1.2E-17 4E-22 129.1 9.1 80 112-191 36-118 (118)
162 3pgw_S U1-70K; protein-RNA com 99.7 4.2E-18 1.4E-22 160.1 7.8 160 132-293 8-183 (437)
163 1u6f_A Tcubp1, RNA-binding pro 99.7 4.8E-17 1.7E-21 129.2 12.9 85 210-296 39-126 (139)
164 3ulh_A THO complex subunit 4; 99.7 2.5E-17 8.4E-22 124.9 10.7 80 112-191 25-106 (107)
165 2dh8_A DAZ-associated protein 99.7 1.7E-17 5.8E-22 125.4 9.5 83 112-194 12-96 (105)
166 2cpi_A CCR4-NOT transcription 99.7 1.3E-17 4.4E-22 127.6 8.8 80 115-194 14-102 (111)
167 2kxn_B Transformer-2 protein h 99.7 1.6E-17 5.3E-22 130.6 9.5 82 112-193 42-126 (129)
168 2la6_A RNA-binding protein FUS 99.7 2.9E-17 1E-21 122.8 10.6 77 212-290 12-99 (99)
169 2dnq_A RNA-binding protein 4B; 99.7 5.4E-17 1.8E-21 119.2 11.8 78 212-297 7-85 (90)
170 1x4c_A Splicing factor, argini 99.7 7E-17 2.4E-21 122.8 12.7 78 212-296 14-97 (108)
171 2wbr_A GW182, gawky, LD47780P; 99.7 3.2E-17 1.1E-21 118.4 10.2 72 213-290 7-79 (89)
172 1sjq_A Polypyrimidine tract-bi 99.7 3.8E-17 1.3E-21 123.1 11.0 78 212-295 15-95 (105)
173 3s7r_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 119.3 10.5 77 211-289 9-87 (87)
174 1x4e_A RNA binding motif, sing 99.7 6.2E-18 2.1E-22 122.8 6.4 78 114-191 3-83 (85)
175 2ad9_A Polypyrimidine tract-bi 99.7 2.9E-17 1E-21 126.6 10.5 77 114-194 29-108 (119)
176 3ns6_A Eukaryotic translation 99.7 4.9E-18 1.7E-22 127.5 5.9 78 212-291 5-92 (100)
177 1x4d_A Matrin 3; structural ge 99.7 1.7E-17 6E-22 124.6 8.9 82 212-299 14-99 (102)
178 1wf1_A RNA-binding protein RAL 99.7 3.3E-17 1.1E-21 125.0 10.6 78 212-297 26-105 (110)
179 2m2b_A RNA-binding protein 10; 99.7 1.3E-17 4.5E-22 131.3 8.5 82 210-294 20-110 (131)
180 2cpi_A CCR4-NOT transcription 99.7 2.5E-17 8.4E-22 126.0 9.8 81 212-294 14-103 (111)
181 2krb_A Eukaryotic translation 99.7 8.5E-18 2.9E-22 121.1 6.7 72 116-187 1-80 (81)
182 2jvr_A Nucleolar protein 3; RN 99.7 2.6E-17 8.9E-22 125.7 9.7 80 212-295 27-108 (111)
183 2dnp_A RNA-binding protein 14; 99.7 7.8E-17 2.7E-21 118.3 11.9 79 211-297 7-86 (90)
184 2dh8_A DAZ-associated protein 99.7 2.5E-17 8.6E-22 124.5 9.4 83 211-295 14-98 (105)
185 3r27_A HnRNP L, heterogeneous 99.7 4.5E-17 1.5E-21 121.5 10.5 77 210-292 18-97 (100)
186 3n9u_C Cleavage and polyadenyl 99.7 2.6E-17 9.1E-22 133.5 10.1 78 115-192 54-136 (156)
187 2kt5_A RNA and export factor-b 99.7 6.6E-17 2.3E-21 126.0 12.0 81 114-194 33-115 (124)
188 2cpe_A RNA-binding protein EWS 99.7 3.5E-17 1.2E-21 125.3 10.3 82 112-193 11-103 (113)
189 2cqg_A TDP-43, TAR DNA-binding 99.7 6.9E-17 2.4E-21 121.6 11.7 82 112-194 11-94 (103)
190 1p1t_A Cleavage stimulation fa 99.7 2.3E-17 7.8E-22 124.4 8.9 79 115-193 7-88 (104)
191 1wez_A HnRNP H', FTP-3, hetero 99.7 1.7E-17 5.8E-22 125.0 8.1 80 113-193 12-92 (102)
192 2khc_A Testis-specific RNP-typ 99.7 4.5E-17 1.5E-21 125.8 10.6 79 210-290 37-118 (118)
193 2dgw_A Probable RNA-binding pr 99.7 4.9E-17 1.7E-21 119.6 10.4 80 113-193 7-87 (91)
194 1x4d_A Matrin 3; structural ge 99.7 1.7E-17 5.9E-22 124.6 7.9 76 114-193 13-92 (102)
195 1u6f_A Tcubp1, RNA-binding pro 99.7 4.8E-17 1.6E-21 129.2 11.0 83 112-194 38-123 (139)
196 1wez_A HnRNP H', FTP-3, hetero 99.7 2.2E-17 7.7E-22 124.3 8.5 83 212-297 14-97 (102)
197 2dgt_A RNA-binding protein 30; 99.7 1.2E-16 4.2E-21 117.7 12.3 78 212-297 9-87 (92)
198 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-17 6.5E-22 126.5 8.1 78 113-192 25-104 (111)
199 2rs2_A Musashi-1, RNA-binding 99.7 4.5E-17 1.5E-21 124.2 10.2 82 112-193 21-104 (109)
200 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-17 4.5E-22 118.6 6.7 73 117-190 1-76 (77)
201 2nlw_A Eukaryotic translation 99.7 1.9E-17 6.6E-22 125.3 8.0 79 114-192 13-99 (105)
202 2cq1_A PTB-like protein L; RRM 99.7 1.7E-16 5.9E-21 119.1 13.1 80 211-296 13-95 (101)
203 3ulh_A THO complex subunit 4; 99.7 6.4E-17 2.2E-21 122.6 10.9 78 211-290 27-106 (107)
204 2db1_A Heterogeneous nuclear r 99.7 2.6E-17 8.7E-22 127.3 8.7 80 113-192 14-97 (118)
205 2kxn_B Transformer-2 protein h 99.7 4.3E-17 1.5E-21 128.1 10.0 80 211-292 44-126 (129)
206 2cqp_A RNA-binding protein 12; 99.7 2E-17 6.9E-22 123.4 7.7 79 114-192 13-94 (98)
207 2nlw_A Eukaryotic translation 99.7 4.3E-17 1.5E-21 123.4 9.6 79 212-292 14-100 (105)
208 2hvz_A Splicing factor, argini 99.7 4.6E-17 1.6E-21 122.1 9.7 77 214-295 1-78 (101)
209 2dnq_A RNA-binding protein 4B; 99.7 9.8E-17 3.3E-21 117.8 11.2 75 113-193 5-80 (90)
210 1p1t_A Cleavage stimulation fa 99.7 2E-17 7E-22 124.7 7.7 81 212-294 7-90 (104)
211 1wi8_A EIF-4B, eukaryotic tran 99.7 5.7E-17 2E-21 122.3 10.1 79 114-193 13-94 (104)
212 2cpy_A RNA-binding protein 12; 99.7 2.3E-17 8E-22 126.7 8.0 81 113-193 12-94 (114)
213 2dis_A Unnamed protein product 99.7 9.4E-17 3.2E-21 122.1 11.3 82 212-295 7-95 (109)
214 1wex_A Hypothetical protein (r 99.7 8.3E-17 2.8E-21 121.6 10.9 77 114-194 13-92 (104)
215 1wg5_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 123.1 9.3 81 113-193 12-94 (104)
216 2rs2_A Musashi-1, RNA-binding 99.7 1E-16 3.5E-21 122.1 11.5 82 210-293 22-105 (109)
217 2mss_A Protein (musashi1); RNA 99.7 2.3E-17 8E-22 116.8 7.3 73 215-289 1-75 (75)
218 2ek1_A RNA-binding protein 12; 99.7 2E-17 6.8E-22 122.6 7.3 77 115-191 14-93 (95)
219 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 6E-21 119.5 12.6 81 212-300 10-91 (103)
220 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.9E-21 129.6 12.3 84 211-296 37-123 (156)
221 2jvo_A Nucleolar protein 3; nu 99.7 7.2E-17 2.5E-21 122.8 10.3 77 210-294 28-105 (108)
222 2dis_A Unnamed protein product 99.7 9.2E-17 3.1E-21 122.1 10.9 81 114-194 6-93 (109)
223 2hgl_A HNRPF protein, heteroge 99.7 2.7E-17 9.3E-22 130.2 8.2 80 112-191 40-123 (136)
224 3n9u_C Cleavage and polyadenyl 99.7 5.8E-17 2E-21 131.5 10.3 78 212-291 54-136 (156)
225 1x5o_A RNA binding motif, sing 99.7 8.5E-17 2.9E-21 123.4 10.6 81 112-192 21-111 (114)
226 2cqp_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 122.0 8.3 80 212-293 14-96 (98)
227 1x4b_A Heterogeneous nuclear r 99.7 9.1E-17 3.1E-21 123.7 10.8 79 115-193 26-106 (116)
228 2e5j_A Methenyltetrahydrofolat 99.7 6.7E-17 2.3E-21 120.4 9.8 78 112-192 15-93 (97)
229 2cq4_A RNA binding motif prote 99.7 5.2E-17 1.8E-21 124.6 9.3 78 115-192 24-103 (114)
230 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-17 6.6E-22 124.2 6.7 80 112-192 15-97 (100)
231 2ki2_A SS-DNA binding protein 99.7 8.9E-18 3E-22 123.3 4.7 76 117-193 2-80 (90)
232 1x4g_A Nucleolysin TIAR; struc 99.7 9.7E-17 3.3E-21 122.1 10.6 79 112-194 21-100 (109)
233 2jwn_A Embryonic polyadenylate 99.7 8E-17 2.7E-21 125.4 10.4 79 115-193 35-115 (124)
234 1why_A Hypothetical protein ri 99.7 8.2E-17 2.8E-21 119.9 10.0 77 113-193 14-93 (97)
235 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.5E-17 2.9E-21 130.4 10.9 82 112-193 35-119 (156)
236 2ytc_A PRE-mRNA-splicing facto 99.7 8.2E-17 2.8E-21 116.8 9.7 75 113-191 9-85 (85)
237 2ad9_A Polypyrimidine tract-bi 99.7 9.5E-17 3.2E-21 123.8 10.5 85 210-300 28-115 (119)
238 2cpj_A Non-POU domain-containi 99.7 6.7E-17 2.3E-21 120.8 9.5 78 112-193 11-89 (99)
239 2dnn_A RNA-binding protein 12; 99.7 6.2E-17 2.1E-21 123.3 9.4 75 116-191 16-91 (109)
240 2cpy_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 125.9 7.9 81 211-293 13-95 (114)
241 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.6E-21 124.2 11.5 84 211-296 33-118 (124)
242 2cpx_A Hypothetical protein FL 99.7 2E-16 6.7E-21 121.5 12.3 82 211-296 23-109 (115)
243 3ex7_B RNA-binding protein 8A; 99.7 6.2E-17 2.1E-21 126.4 9.6 81 114-194 20-103 (126)
244 1x4c_A Splicing factor, argini 99.7 1.7E-16 5.7E-21 120.7 11.6 76 114-194 13-94 (108)
245 2la4_A Nuclear and cytoplasmic 99.7 6.1E-17 2.1E-21 121.5 9.0 76 113-192 24-100 (101)
246 2krb_A Eukaryotic translation 99.7 2.8E-17 9.7E-22 118.3 6.9 72 214-287 2-81 (81)
247 2jvo_A Nucleolar protein 3; nu 99.7 9E-17 3.1E-21 122.3 10.0 77 111-193 26-103 (108)
248 1fjc_A Nucleolin RBD2, protein 99.7 8.6E-17 2.9E-21 119.4 9.6 79 211-294 14-93 (96)
249 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-17 5.3E-22 117.7 5.3 73 118-190 1-75 (75)
250 2ki2_A SS-DNA binding protein 99.7 1.8E-17 6.2E-22 121.7 5.4 80 214-296 2-84 (90)
251 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.6E-17 1.2E-21 122.6 7.1 79 211-292 17-98 (100)
252 2cq4_A RNA binding motif prote 99.7 3.2E-17 1.1E-21 125.8 7.0 80 212-293 24-105 (114)
253 2xnq_A Nuclear polyadenylated 99.7 1.6E-16 5.6E-21 118.4 10.6 75 112-192 18-94 (97)
254 2cqh_A IGF-II mRNA-binding pro 99.7 9E-17 3.1E-21 118.7 9.0 78 212-296 7-87 (93)
255 2a3j_A U1 small nuclear ribonu 99.7 6.4E-17 2.2E-21 126.5 8.6 79 212-293 28-111 (127)
256 2ek1_A RNA-binding protein 12; 99.7 4.4E-17 1.5E-21 120.8 7.3 78 212-291 14-94 (95)
257 2fc8_A NCL protein; structure 99.7 2.2E-16 7.5E-21 118.6 11.2 84 210-298 12-98 (102)
258 2kvi_A Nuclear polyadenylated 99.7 7.7E-17 2.6E-21 119.9 8.6 82 211-300 8-91 (96)
259 2a3j_A U1 small nuclear ribonu 99.7 9.1E-17 3.1E-21 125.7 9.3 78 114-192 27-109 (127)
260 1x4e_A RNA binding motif, sing 99.7 2.4E-17 8.1E-22 119.7 5.6 77 212-290 4-83 (85)
261 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.6E-21 131.2 10.1 79 115-193 71-152 (165)
262 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.5E-21 127.2 9.7 79 112-190 59-140 (140)
263 2lmi_A GRSF-1, G-rich sequence 99.7 2.9E-17 9.9E-22 124.8 6.0 81 112-192 7-91 (107)
264 1x5o_A RNA binding motif, sing 99.7 2.3E-16 7.9E-21 120.9 11.1 81 211-293 23-113 (114)
265 1why_A Hypothetical protein ri 99.7 4E-16 1.4E-20 116.1 12.0 77 211-293 15-94 (97)
266 1whx_A Hypothetical protein ri 99.7 8.4E-17 2.9E-21 123.1 8.4 76 115-194 9-85 (111)
267 2hgn_A Heterogeneous nuclear r 99.7 1.9E-17 6.5E-22 131.5 5.0 125 157-297 2-128 (139)
268 2fc9_A NCL protein; structure 99.7 1.9E-16 6.6E-21 118.7 10.2 80 112-194 11-92 (101)
269 2m2b_A RNA-binding protein 10; 99.7 3.8E-17 1.3E-21 128.7 6.6 80 113-193 20-108 (131)
270 2dnp_A RNA-binding protein 14; 99.7 2.2E-16 7.5E-21 115.9 10.1 76 112-193 5-81 (90)
271 2cpj_A Non-POU domain-containi 99.7 3.3E-16 1.1E-20 117.0 11.1 78 211-294 13-91 (99)
272 2dgt_A RNA-binding protein 30; 99.7 4.2E-16 1.4E-20 114.9 11.5 76 112-193 6-82 (92)
273 2xnq_A Nuclear polyadenylated 99.7 4E-16 1.4E-20 116.3 11.5 76 210-293 19-96 (97)
274 1x4f_A Matrin 3; structural ge 99.7 7.5E-17 2.6E-21 123.0 7.5 77 113-193 22-102 (112)
275 1wg5_A Heterogeneous nuclear r 99.7 3E-16 1E-20 118.5 10.8 80 212-293 14-95 (104)
276 1fj7_A Nucleolin RBD1, protein 99.7 5.9E-17 2E-21 121.5 6.8 78 212-292 16-95 (101)
277 1wex_A Hypothetical protein (r 99.7 2.2E-16 7.6E-21 119.2 10.0 78 211-294 13-93 (104)
278 2dgw_A Probable RNA-binding pr 99.7 3.4E-16 1.2E-20 115.0 10.7 79 212-293 9-88 (91)
279 1iqt_A AUF1, heterogeneous nuc 99.7 6.7E-17 2.3E-21 114.4 6.2 73 215-289 1-75 (75)
280 2db1_A Heterogeneous nuclear r 99.7 2E-16 6.8E-21 122.3 9.4 78 212-291 16-97 (118)
281 2e5j_A Methenyltetrahydrofolat 99.7 3.6E-16 1.2E-20 116.4 10.5 77 212-293 18-95 (97)
282 1wel_A RNA-binding protein 12; 99.7 6.6E-17 2.2E-21 126.1 6.7 79 114-192 23-103 (124)
283 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-15 4.7E-20 113.6 13.5 84 211-300 13-97 (99)
284 2dnn_A RNA-binding protein 12; 99.7 2.6E-16 8.8E-21 119.8 9.6 76 213-291 16-92 (109)
285 1nu4_A U1A RNA binding domain; 99.7 1.5E-16 5E-21 118.4 8.1 79 212-293 7-90 (97)
286 2e5g_A U6 snRNA-specific termi 99.7 5.5E-16 1.9E-20 114.7 11.1 77 114-193 6-82 (94)
287 2ytc_A PRE-mRNA-splicing facto 99.7 4.9E-16 1.7E-20 112.6 10.4 73 212-290 11-85 (85)
288 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-16 3.5E-21 113.9 6.6 73 214-289 1-76 (77)
289 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.8E-16 1.6E-20 123.4 11.2 78 210-289 60-140 (140)
290 2hgm_A HNRPF protein, heteroge 99.7 1.3E-16 4.5E-21 124.4 7.7 78 113-191 39-119 (126)
291 3lqv_A PRE-mRNA branch site pr 99.7 3.7E-16 1.3E-20 120.0 10.1 79 212-293 7-86 (115)
292 2dgu_A Heterogeneous nuclear r 99.7 5.9E-16 2E-20 116.6 10.8 75 114-194 9-84 (103)
293 2cpd_A Apobec-1 stimulating pr 99.7 9.5E-16 3.3E-20 114.5 11.7 74 114-193 13-89 (99)
294 1nu4_A U1A RNA binding domain; 99.7 1.1E-16 3.6E-21 119.1 6.4 80 113-193 5-89 (97)
295 2kvi_A Nuclear polyadenylated 99.7 2.4E-16 8E-21 117.2 8.2 75 113-193 7-83 (96)
296 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-16 4.4E-21 124.1 7.0 78 114-191 21-103 (123)
297 2hgl_A HNRPF protein, heteroge 99.7 1.3E-16 4.3E-21 126.3 7.0 78 212-291 43-124 (136)
298 3q2s_C Cleavage and polyadenyl 99.7 2.4E-16 8.2E-21 135.8 9.2 78 115-192 67-149 (229)
299 1fj7_A Nucleolin RBD1, protein 99.7 4.3E-17 1.5E-21 122.3 3.8 79 114-193 15-95 (101)
300 1wf1_A RNA-binding protein RAL 99.6 5.4E-16 1.9E-20 118.2 9.5 73 115-193 26-100 (110)
301 2lmi_A GRSF-1, G-rich sequence 99.6 1.1E-16 3.9E-21 121.4 5.7 79 212-292 10-92 (107)
302 1wg1_A KIAA1579 protein, homol 99.6 3.6E-16 1.2E-20 114.3 8.1 74 115-193 4-78 (88)
303 2hgn_A Heterogeneous nuclear r 99.6 6.7E-17 2.3E-21 128.3 4.5 80 113-193 43-123 (139)
304 1whx_A Hypothetical protein ri 99.6 7.9E-16 2.7E-20 117.6 10.3 77 212-294 9-86 (111)
305 3egn_A RNA-binding protein 40; 99.6 2.3E-16 7.8E-21 126.0 7.5 81 212-295 44-133 (143)
306 2cpx_A Hypothetical protein FL 99.6 5.8E-16 2E-20 118.8 9.4 79 114-194 23-106 (115)
307 1fjc_A Nucleolin RBD2, protein 99.6 3.3E-16 1.1E-20 116.2 7.7 77 114-193 14-91 (96)
308 2cqh_A IGF-II mRNA-binding pro 99.6 4.2E-16 1.4E-20 115.0 8.0 76 113-193 5-83 (93)
309 2fc8_A NCL protein; structure 99.6 7.7E-16 2.6E-20 115.6 9.6 79 112-193 11-92 (102)
310 2xs2_A Deleted in azoospermia- 99.6 3.1E-16 1.1E-20 117.8 7.3 77 115-192 8-85 (102)
311 2cq2_A Hypothetical protein LO 99.6 3.6E-16 1.2E-20 119.4 7.6 75 114-192 23-105 (114)
312 2e44_A Insulin-like growth fac 99.6 5E-16 1.7E-20 115.3 8.2 78 114-193 13-92 (96)
313 2la4_A Nuclear and cytoplasmic 99.6 7.8E-16 2.7E-20 115.4 9.2 74 212-291 26-100 (101)
314 3beg_B Splicing factor, argini 99.6 8.9E-16 3.1E-20 118.0 9.4 78 212-296 15-98 (115)
315 2xs2_A Deleted in azoospermia- 99.6 3.9E-16 1.3E-20 117.2 7.1 79 212-293 8-87 (102)
316 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.5E-20 112.3 9.0 75 113-193 8-84 (89)
317 3q2s_C Cleavage and polyadenyl 99.6 5.1E-16 1.8E-20 133.8 8.4 79 212-292 67-150 (229)
318 2f3j_A RNA and export factor b 99.6 8.1E-16 2.8E-20 127.3 9.2 80 114-193 86-167 (177)
319 2lcw_A RNA-binding protein FUS 99.4 2.5E-17 8.5E-22 126.9 0.0 81 113-193 4-95 (116)
320 1x5p_A Negative elongation fac 99.6 4.3E-15 1.5E-19 110.5 12.2 76 112-193 11-87 (97)
321 1sjr_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 123.2 10.1 78 115-194 45-125 (164)
322 1wel_A RNA-binding protein 12; 99.6 2.9E-16 9.9E-21 122.4 5.7 78 212-291 24-103 (124)
323 3zzy_A Polypyrimidine tract-bi 99.6 1.8E-15 6.2E-20 118.1 10.2 75 117-194 29-107 (130)
324 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.1E-20 115.1 10.2 76 211-292 23-106 (114)
325 1x4f_A Matrin 3; structural ge 99.6 5.7E-16 1.9E-20 118.1 7.1 78 210-293 22-103 (112)
326 3egn_A RNA-binding protein 40; 99.6 8.9E-16 3E-20 122.5 8.4 80 113-193 42-130 (143)
327 2lcw_A RNA-binding protein FUS 99.4 3.7E-17 1.3E-21 125.9 0.0 81 212-294 6-97 (116)
328 2e5g_A U6 snRNA-specific termi 99.6 4.8E-15 1.7E-19 109.6 11.5 77 212-293 7-83 (94)
329 2e44_A Insulin-like growth fac 99.6 2.7E-15 9.2E-20 111.3 10.0 78 212-293 14-93 (96)
330 2dha_A FLJ20171 protein; RRM d 99.6 5.2E-16 1.8E-20 120.7 6.3 78 211-290 21-103 (123)
331 3beg_B Splicing factor, argini 99.6 1.4E-15 4.8E-20 116.9 8.3 73 115-192 15-93 (115)
332 3zzy_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 116.5 10.3 75 213-292 28-106 (130)
333 1x5p_A Negative elongation fac 99.6 1.2E-14 4.3E-19 108.0 12.9 74 212-293 14-88 (97)
334 1sjr_A Polypyrimidine tract-bi 99.6 3.4E-15 1.2E-19 120.9 10.5 77 213-293 46-125 (164)
335 2f3j_A RNA and export factor b 99.6 2.2E-15 7.7E-20 124.7 9.6 80 212-293 87-168 (177)
336 1wf0_A TDP-43, TAR DNA-binding 99.6 1.6E-15 5.3E-20 110.8 7.7 82 212-299 4-85 (88)
337 2hzc_A Splicing factor U2AF 65 99.6 1.7E-15 5.8E-20 110.1 7.8 71 115-189 5-86 (87)
338 2hgm_A HNRPF protein, heteroge 99.6 9.6E-16 3.3E-20 119.5 6.7 78 212-291 41-120 (126)
339 2e5i_A Heterogeneous nuclear r 99.6 4.6E-15 1.6E-19 115.2 10.1 72 119-194 28-103 (124)
340 2j8a_A Histone-lysine N-methyl 99.6 2.5E-15 8.6E-20 115.7 8.4 75 117-191 3-94 (136)
341 2pe8_A Splicing factor 45; RRM 99.6 7.8E-15 2.7E-19 110.8 10.7 80 211-292 6-94 (105)
342 1wg1_A KIAA1579 protein, homol 99.6 5.9E-15 2E-19 107.8 9.7 75 212-293 4-79 (88)
343 1wf0_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.5E-20 110.0 7.2 75 115-193 4-78 (88)
344 2diu_A KIAA0430 protein; struc 99.6 4.2E-15 1.5E-19 108.3 8.6 70 116-193 9-84 (96)
345 2voo_A Lupus LA protein; RNA-b 99.6 5.1E-15 1.8E-19 124.2 10.3 77 116-192 109-186 (193)
346 3d2w_A TAR DNA-binding protein 99.6 7.1E-15 2.4E-19 107.7 9.5 73 212-292 10-84 (89)
347 2diu_A KIAA0430 protein; struc 99.6 6.2E-15 2.1E-19 107.4 8.9 71 213-293 8-85 (96)
348 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-14 6.3E-19 120.8 13.2 120 165-293 63-188 (193)
349 2dnl_A Cytoplasmic polyadenyla 99.6 1E-14 3.5E-19 111.8 10.3 74 114-190 6-85 (114)
350 2bz2_A Negative elongation fac 99.6 9.2E-15 3.1E-19 113.4 9.4 76 112-193 35-111 (121)
351 2e5i_A Heterogeneous nuclear r 99.6 1.5E-14 5E-19 112.4 10.4 74 214-293 26-103 (124)
352 2pe8_A Splicing factor 45; RRM 99.6 2.1E-14 7.2E-19 108.5 10.7 79 114-192 6-93 (105)
353 2bz2_A Negative elongation fac 99.6 1.1E-14 3.8E-19 112.9 9.1 76 211-294 37-113 (121)
354 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-14 5.3E-19 110.8 9.8 80 212-294 7-103 (114)
355 2hzc_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 102.4 9.9 71 212-288 5-86 (87)
356 3u1l_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.6E-19 123.5 8.7 76 114-193 132-229 (240)
357 2dit_A HIV TAT specific factor 99.5 1.2E-13 4E-18 105.6 11.6 80 211-294 13-104 (112)
358 2dit_A HIV TAT specific factor 99.5 9.5E-14 3.2E-18 106.1 10.1 79 112-192 11-101 (112)
359 2j8a_A Histone-lysine N-methyl 99.5 4E-14 1.4E-18 109.0 7.8 76 214-291 3-95 (136)
360 3v4m_A Splicing factor U2AF 65 99.5 7.5E-14 2.6E-18 105.4 8.3 78 212-291 4-96 (105)
361 3u1l_A PRE-mRNA-splicing facto 99.5 5.3E-14 1.8E-18 121.2 8.3 80 212-297 133-234 (240)
362 1jmt_A Splicing factor U2AF 35 99.5 2.8E-14 9.4E-19 107.6 4.5 70 121-190 20-103 (104)
363 3v4m_A Splicing factor U2AF 65 99.5 2.2E-13 7.6E-18 102.8 8.6 77 115-191 4-95 (105)
364 1jmt_A Splicing factor U2AF 35 99.4 5.3E-14 1.8E-18 106.1 4.4 70 218-289 20-103 (104)
365 3ue2_A Poly(U)-binding-splicin 99.4 5.1E-13 1.7E-17 102.9 8.5 77 115-191 19-107 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4.1E-17 97.7 10.3 67 223-296 27-94 (100)
367 3ue2_A Poly(U)-binding-splicin 99.4 8.3E-13 2.8E-17 101.7 8.2 79 211-291 18-108 (118)
368 3s6e_A RNA-binding protein 39; 99.3 6.8E-12 2.3E-16 95.9 9.4 76 212-291 6-92 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 8E-12 2.7E-16 93.2 9.4 63 126-193 27-90 (100)
370 3tht_A Alkylated DNA repair pr 99.3 3.6E-12 1.2E-16 115.4 8.9 75 113-191 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.3 8.5E-12 2.9E-16 95.4 9.3 77 113-191 4-91 (114)
372 3tht_A Alkylated DNA repair pr 99.2 3.9E-11 1.3E-15 108.6 9.4 75 210-290 15-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 1.3E-10 4.4E-15 83.8 8.8 74 211-292 5-86 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 9.4E-10 3.2E-14 79.3 8.2 72 115-192 6-85 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.3E-09 4.3E-14 83.6 9.1 72 115-190 17-93 (121)
376 1owx_A Lupus LA protein, SS-B, 99.0 2.2E-09 7.5E-14 82.3 8.6 72 211-288 16-92 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 2.2E-09 7.6E-14 77.8 7.4 74 210-291 12-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 4.2E-09 1.4E-13 76.3 5.3 71 114-190 13-92 (95)
379 3dxb_A Thioredoxin N-terminall 98.8 1.1E-08 3.8E-13 87.1 8.0 64 226-291 142-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4E-13 87.0 7.6 64 128-191 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 4.8E-07 1.6E-11 66.9 9.6 72 213-288 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 4.1E-07 1.4E-11 67.2 8.5 77 109-189 14-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 3.1E-05 1.1E-09 56.7 10.0 89 114-226 6-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.0 0.00016 5.5E-09 52.9 12.1 79 212-296 7-88 (104)
385 1wey_A Calcipressin 1; structu 97.8 8E-05 2.7E-09 54.8 7.5 74 213-292 5-84 (104)
386 1wey_A Calcipressin 1; structu 97.4 0.00076 2.6E-08 49.5 8.1 74 115-192 4-83 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.3 0.0016 5.6E-08 49.1 9.6 70 213-289 24-94 (119)
388 1wwh_A Nucleoporin 35, nucleop 97.3 0.0014 4.7E-08 49.5 8.5 71 115-190 23-94 (119)
389 1uw4_A UPF3X; nonsense mediate 97.2 0.0013 4.4E-08 47.4 7.3 65 214-280 2-71 (91)
390 1uw4_A UPF3X; nonsense mediate 97.2 0.0021 7.2E-08 46.3 8.1 65 117-181 2-71 (91)
391 1whv_A Poly(A)-specific ribonu 97.1 0.0014 4.8E-08 47.4 6.5 54 115-175 15-69 (100)
392 1whv_A Poly(A)-specific ribonu 96.9 0.0024 8.2E-08 46.2 6.2 52 214-274 17-69 (100)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0023 7.9E-08 46.4 5.1 53 214-275 7-60 (101)
394 3ctr_A Poly(A)-specific ribonu 96.6 0.0026 8.8E-08 46.2 4.9 52 118-176 8-60 (101)
395 3p3d_A Nucleoporin 53; structu 96.5 0.0025 8.4E-08 48.8 4.4 75 214-291 8-98 (132)
396 2l08_A Regulator of nonsense t 95.8 0.0073 2.5E-07 43.8 3.6 65 214-280 10-79 (97)
397 3p3d_A Nucleoporin 53; structu 95.8 0.012 4.1E-07 45.0 4.9 75 116-191 7-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.5 0.0078 2.7E-07 56.2 3.7 66 111-180 48-113 (464)
399 2l08_A Regulator of nonsense t 95.3 0.019 6.5E-07 41.5 4.3 66 116-181 9-79 (97)
400 3pq1_A Poly(A) RNA polymerase; 94.9 0.012 3.9E-07 55.1 2.6 59 210-274 50-108 (464)
401 3d45_A Poly(A)-specific ribonu 85.1 3 0.0001 39.3 8.6 54 213-275 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 83.9 2.6 9E-05 39.7 7.6 54 116-176 440-494 (507)
403 4e8u_A Putative uncharacterize 63.6 11 0.00037 30.0 5.0 56 118-174 14-81 (172)
404 1ytr_A Bacteriocin plantaricin 31.2 24 0.00082 17.8 1.4 13 35-47 13-25 (26)
405 4e8u_A Putative uncharacterize 30.7 85 0.0029 24.8 5.3 48 215-265 14-72 (172)
406 3tqs_A Ribosomal RNA small sub 27.1 29 0.001 29.2 2.2 29 26-54 100-128 (255)
407 4aj5_1 SKA3, spindle and kinet 26.9 30 0.001 24.7 1.8 14 34-47 88-101 (101)
408 3uzu_A Ribosomal RNA small sub 23.8 37 0.0013 29.0 2.2 30 25-54 117-146 (279)
409 2cu1_A Mitogen-activated prote 23.6 2E+02 0.0069 20.4 7.2 75 220-301 23-99 (103)
410 3j21_T 50S ribosomal protein L 22.8 1.8E+02 0.0062 20.0 5.2 54 216-270 25-78 (86)
411 3fut_A Dimethyladenosine trans 22.1 67 0.0023 27.2 3.5 33 116-149 110-142 (271)
412 2g0c_A ATP-dependent RNA helic 21.0 1.1E+02 0.0038 19.9 3.8 59 224-290 12-75 (76)
413 3uzu_A Ribosomal RNA small sub 20.7 38 0.0013 28.9 1.6 33 117-149 115-147 (279)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.1e-44 Score=320.91 Aligned_cols=245 Identities=15% Similarity=0.223 Sum_probs=199.7
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc-eeeeecchhhhhhchhhhccccchHHhhhhcccC
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH-HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG 98 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g 98 (303)
..+.+|||+|||+++|+++|+++|++||+|.+|+|+.+..+..+. ||+| .+ .+ +|.+|+. +++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f-----~~-----~~----~A~~A~~-~~~- 102 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEF-----AR-----YD----GALAAIT-KTH- 102 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEE-----SS-----HH----HHHHHHT-TTT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEE-----CC-----HH----HHHHHHH-hCC-
Confidence 456689999999999999999999999999999999988765444 9999 88 88 8999994 665
Q ss_pred CCCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCC-ceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-h
Q 022058 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-L 175 (303)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l 175 (303)
.. +..+.... .....++|||+|||+++++++|+++|+.|| .|.+|.++.+..+ ++|||||+|.+.++|.+|+. |
T Consensus 103 ~~-~~g~~i~v--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 103 KV-VGQNEIIV--SHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp CE-ETTEECEE--EECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHH
T ss_pred cE-eCCcEEEE--EECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 11 11111111 122578999999999999999999999999 9999999988765 89999999999999999999 9
Q ss_pred CCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCC-CCHHHHHHHhhhhcCcceeEEEEecCC---
Q 022058 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVTRLRLLGDH--- 251 (303)
Q Consensus 176 ~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~i~~v~i~~d~--- 251 (303)
||..+.|++|.|.++.+...... ........++|||+|||.. +++++|+++|++| |.|..|.|+++.
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~t 250 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSKR-------TDSATLEGREIMIRNLSTELLDENLLRESFEGF--GSIEKINIPAGQKEH 250 (292)
T ss_dssp TTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGG--SCEEEEECCSCCC--
T ss_pred CCCEeCCcEEEEEECCCCccccc-------ccccCCCCceEEEECCCcccCCHHHHHHHHhcc--CCeeEEEEEecCCcC
Confidence 99999999999999865432110 0122345689999999999 9999999999999 999999999984
Q ss_pred CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 022058 252 VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 252 ~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~~ 292 (303)
|.++|||||+|.+.++|.+|+.|||..|+|+.|.|.|+++.
T Consensus 251 g~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 251 SFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred CCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 78899999999999999999999999999999999999864
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.9e-43 Score=315.40 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=203.1
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhcccCC
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR 99 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~ 99 (303)
..+.+|||+|||+++|+++|+++|++|| |.+|++...+ ...||+| .+ .+ +|.+|+..+++-.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~---g~afV~f-----~~-----~~----~A~~A~~~l~~~~ 81 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYK---GTAFVTL-----LN-----GE----QAEAAINAFHQSR 81 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTT---TEEEEEE-----SS-----HH----HHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCC---CEEEEEe-----CC-----HH----HHHHHHHHcCCCe
Confidence 4556899999999999999999999999 9999983221 1229999 88 88 9999999888711
Q ss_pred CCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hC
Q 022058 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LG 176 (303)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~ 176 (303)
+..+..... .....++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+|+. +|
T Consensus 82 --~~g~~i~v~-~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 82 --LRERELSVQ-LQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp --ETTEECEEE-ECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred --eCCeEEEEE-ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 111111111 1235689999999999999999999999999999999988654 79999999999999999997 99
Q ss_pred CcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCC-CHHHHHHHhhhhcCcceeEEEEecCC-CCc
Q 022058 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV-PQAEVKQFFEAACGGEVTRLRLLGDH-VHS 254 (303)
Q Consensus 177 g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~ 254 (303)
|..+.|++|.|.++...... .......+|||+|||..+ ++++|+++|++| |.|.++.|+++. |.+
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~g~~ 225 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLT-----------PALLHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTFCQLACGQDGQL 225 (284)
T ss_dssp TCEETTEECEEEECCGGGCC-----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSEEEEEECSSCCE
T ss_pred CCEeCCcEEEEEECCCCCCC-----------cccCCccEEEEecCCcccCCHHHHHHHhhCC--CCeEEEEEEECCCCCc
Confidence 99999999999998654321 112345899999999995 999999999999 999999999985 789
Q ss_pred ccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 255 TRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 255 ~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
+|+|||+|.+.++|.+|+. |||..++|+.|.|.|+++...
T Consensus 226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999 999999999999999987654
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.5e-36 Score=255.38 Aligned_cols=164 Identities=27% Similarity=0.424 Sum_probs=148.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++|+++|+++|+.||+|.+|+|++|..+ ++|||||+|.+.++|.+|+. +|+..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 5689999999999999999999999999999999998765 78999999999999999998 99999999999999874
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILA 271 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~A 271 (303)
... ........+|||+|||..+++++|+++|++| |.|.+|.|++|.+.++|||||+|.+.++|.+|
T Consensus 94 ~~~------------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 94 RDP------------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp CCT------------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETTEEEEEEEEEESSHHHHHHH
T ss_pred ccc------------cccccccccceECCcccccHHHHHHHHHhhc--CCeEEEEeeccCCCCceEEEEEeCCHHHHHHH
Confidence 221 1122245789999999999999999999999 99999999999888899999999999999999
Q ss_pred HH-hCCceeCCeeeEEeecCCC
Q 022058 272 LN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 272 i~-l~g~~~~g~~l~v~~a~~~ 292 (303)
+. |||..|+|+.|+|.++++.
T Consensus 160 i~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHTTCEETTEECEEEECCCH
T ss_pred HHHhCCCEECCEEEEEEEcCCC
Confidence 98 9999999999999999763
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.9e-35 Score=245.44 Aligned_cols=180 Identities=17% Similarity=0.267 Sum_probs=148.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
++...++|||+|||+++|+++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+.+++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 4446889999999999999999999999999999999998764 79999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHH
Q 022058 190 SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAES 267 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~ 267 (303)
+....... ........++|||+|||..+++++|+++|++| |.|..|.|+++. |.++|||||+|.+.++
T Consensus 89 ~~~~~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 89 AVSREDSQ--------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ccCccccc--------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCCccceEEEEECCHHH
Confidence 75432111 11122345899999999999999999999999 999999999984 7899999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEeecCCCCCCCCCCCC
Q 022058 268 AILALNCSGMVLGSQPIRVSPSKTPVRPRVTRPG 301 (303)
Q Consensus 268 A~~Ai~l~g~~~~g~~l~v~~a~~~~~~r~~r~~ 301 (303)
|.+|+.++|..++|+.|.|.++.+....+..+.+
T Consensus 159 A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~~~~ 192 (196)
T 1l3k_A 159 VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS 192 (196)
T ss_dssp HHHHHHCSCCEETTEECEEEECC-----------
T ss_pred HHHHHHhCCcEECCEEEEEEecCChhHhcccccc
Confidence 9999997899999999999999877665544443
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-35 Score=238.39 Aligned_cols=161 Identities=22% Similarity=0.348 Sum_probs=146.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~ 194 (303)
++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|+. +||..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999998865 89999999999999999997 99999999999999975432
Q ss_pred CCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHH
Q 022058 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILAL 272 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai 272 (303)
. ....+..+|||+|||..+++++|+++|++| |.|.++.++++. |.++|+|||+|.+.++|.+|+
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 1 112345799999999999999999999999 999999999884 788999999999999999999
Q ss_pred H-hCCceeCCeeeEEeecCC
Q 022058 273 N-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 273 ~-l~g~~~~g~~l~v~~a~~ 291 (303)
. |||..++|+.|+|.||++
T Consensus 147 ~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 147 DSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHTTCEETTEECEEEESCC
T ss_pred HHhCCCccCCcEEEEEecCC
Confidence 8 999999999999999974
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.1e-34 Score=247.94 Aligned_cols=177 Identities=24% Similarity=0.355 Sum_probs=150.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++++..+ ++|||||+|.+.++|.+|++ +|+..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 5789999999999999999999999999999999998744 79999999999999999999 99999999999998864
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~ 269 (303)
...... + ............++|||+|||..+++++|+++|++| |.|.++.|+++. |.++|||||+|.+.++|.
T Consensus 107 ~~~~~~-~--~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQ-P--IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGH-H--HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccc-h--hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 321000 0 000001123456899999999999999999999999 999999999984 788999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCCCCCC
Q 022058 270 LALN-CSGMVLGSQPIRVSPSKTPVRPR 296 (303)
Q Consensus 270 ~Ai~-l~g~~~~g~~l~v~~a~~~~~~r 296 (303)
+|+. |||..|+|+.|+|.|++++..+.
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999 99999999999999998875544
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-33 Score=231.64 Aligned_cols=159 Identities=22% Similarity=0.413 Sum_probs=145.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
.+++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|+. +||..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999998654 78999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~ 269 (303)
+... .....+|||+|||..+++++|+++|++| |.|..+.++++. +.++|+|||+|.+.++|.
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 4321 1244789999999999999999999999 999999999885 788999999999999999
Q ss_pred HHHH-hCCceeCC--eeeEEeec
Q 022058 270 LALN-CSGMVLGS--QPIRVSPS 289 (303)
Q Consensus 270 ~Ai~-l~g~~~~g--~~l~v~~a 289 (303)
+|+. |||..+.| +.|+|.||
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999 99999987 99999986
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.9e-33 Score=229.13 Aligned_cols=158 Identities=25% Similarity=0.425 Sum_probs=143.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
+++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|+. +||..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 689999999999999999999999999999999998743 78999999999999999998 999999999999999753
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~ 270 (303)
.. ......+|||+|||..+++++|+++|++| |.|..+.++++. |.++|+|||+|.+.++|.+
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 21 12244789999999999999999999999 999999999885 6789999999999999999
Q ss_pred HHH-hCCceeCCee--eEEeec
Q 022058 271 ALN-CSGMVLGSQP--IRVSPS 289 (303)
Q Consensus 271 Ai~-l~g~~~~g~~--l~v~~a 289 (303)
|+. |||..+.|+. |+|.||
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 999 9999999965 888886
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.2e-33 Score=231.87 Aligned_cols=161 Identities=16% Similarity=0.286 Sum_probs=145.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||+++|+++|+++|+.||.|.+|.+++++.+ ++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 3689999999999999999999999999999999998653 89999999999999999999 35689999999988642
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~ 270 (303)
. .......+|||+|||..+++++|+++|++| |.|.++.++.+. |.++|||||+|.+.++|.+
T Consensus 81 ~--------------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 R--------------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp H--------------HHHHHCEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred h--------------hhccCCCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 1 112245789999999999999999999999 999999999984 7899999999999999999
Q ss_pred HHHhCCceeCCeeeEEeecCCC
Q 022058 271 ALNCSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 271 Ai~l~g~~~~g~~l~v~~a~~~ 292 (303)
|+++||..++|+.|+|.|++|.
T Consensus 145 A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCCC
T ss_pred HHhCCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999864
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1e-32 Score=227.73 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=143.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC----CceEEEEEecCHHHHHHHHH-hCCcccC---CeeEE
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAALN-LGGTMLG---YYPVR 186 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----~~G~~fV~f~~~~~A~~Ai~-l~g~~~~---g~~i~ 186 (303)
..++|||+|||+++++++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|.+|++ +|+..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999999998764 68999999999999999998 9998876 68888
Q ss_pred EeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCH
Q 022058 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVA 265 (303)
Q Consensus 187 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~ 265 (303)
+.++..... .....++|||+|||..+++++|+++|++| |.|.++.++++. |.++|||||+|.+.
T Consensus 82 ~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 82 MKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSSF--GQIEECRILRGPDGLSRGCAFVTFTTR 146 (175)
T ss_dssp EEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred Ecccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEEEEECCCCCEEEEEEEEECCH
Confidence 887643221 12245789999999999999999999999 999999999985 78899999999999
Q ss_pred HHHHHHHH-hCCceeC---CeeeEEeecC
Q 022058 266 ESAILALN-CSGMVLG---SQPIRVSPSK 290 (303)
Q Consensus 266 e~A~~Ai~-l~g~~~~---g~~l~v~~a~ 290 (303)
++|.+|+. |||..+. ++.|+|.||.
T Consensus 147 ~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 147 AMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999998 9998776 4999999984
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.3e-32 Score=234.24 Aligned_cols=170 Identities=17% Similarity=0.205 Sum_probs=141.3
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
.+++|||+||| +.+++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|++||+ |||..+.|++|.|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 46899999999 89999999999999999999999875 36999999999999999998 999999999999999864
Q ss_pred CCC-CCCCCCC---------------CC-cc------cccccccceEEEcCCCCCCCHHHHHHHhhhhcCcce--eEEEE
Q 022058 193 AIL-PVNPTFL---------------PR-SE------DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV--TRLRL 247 (303)
Q Consensus 193 ~~~-~~~~~~~---------------~~-~~------~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i--~~v~i 247 (303)
... +..+... .+ .. .....+.++|||+|||+.+++++|+++|++| |.| ..+.+
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~--G~v~~~~v~~ 157 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL--GVKRPTSVKV 157 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH--TCCCCSEEEE
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEE
Confidence 321 1100000 00 00 0002346789999999999999999999999 999 89999
Q ss_pred ecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCe----eeEEeec
Q 022058 248 LGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQ----PIRVSPS 289 (303)
Q Consensus 248 ~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~----~l~v~~a 289 (303)
.++.+.++|+|||+|.+.++|.+|+. |||..|.|+ .+.|+++
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99887777999999999999999998 999999877 4666654
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.1e-31 Score=226.13 Aligned_cols=174 Identities=20% Similarity=0.301 Sum_probs=145.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSC----G-------QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~ 183 (303)
..++|||+|||+++++++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|+.|||..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 46899999999999999999999999 5 566666632 57999999999999999999999999999
Q ss_pred eEEEeecCCCCCCCCCCCCCC------cccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcc
Q 022058 184 PVRVLPSKTAILPVNPTFLPR------SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHST 255 (303)
Q Consensus 184 ~i~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~ 255 (303)
+|.|.++............+. .........++|||+|||..+++++|+++|++| |.|..+.+.++. |.++
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECTTTCSEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecCCCCCcc
Confidence 999999865432111000000 011112456899999999999999999999999 999999999984 7889
Q ss_pred cEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 256 RIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 256 g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
|||||+|.+.++|.+|+. |||..++|+.|+|.++++..+
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999998 999999999999999987643
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=8.9e-33 Score=228.67 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=140.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCC-CCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
.+...++|||+|||+++++++|+++|+.||.+..+.+.... ..++|||||+|.+.++|.+|++|||..+.|++|.|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 44568999999999999999999999999987663222222 23789999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHH
Q 022058 191 KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~ 270 (303)
..... ......++|||+|||..+++++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+
T Consensus 89 ~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~---~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 89 KGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV---SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE---CSSSSCCSEEEEECSSHHHHHH
T ss_pred CCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe---cCCCCCceEEEEEECCHHHHHH
Confidence 54321 112345899999999999999999999999 988877 4457899999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCC
Q 022058 271 ALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 271 Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
|+. |||..++|+.|+|.|++|.
T Consensus 152 A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHhCCCEECCeEEEEEecCCC
Confidence 999 9999999999999999864
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1e-31 Score=221.45 Aligned_cols=155 Identities=21% Similarity=0.340 Sum_probs=139.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSC----G-------QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~ 183 (303)
..++|||+|||+++|+++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|+.+|+..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET----TTTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC----CCCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 36899999999999999999999999 6 777777754 36899999999999999999999999999
Q ss_pred eEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEE
Q 022058 184 PVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVE 261 (303)
Q Consensus 184 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~ 261 (303)
+|.|.++..... .....+|||+|||..+++++|+++|++| |.|..+.+++++ |.++|+|||+
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTCSEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecCCCCCcceEEEEE
Confidence 999998653221 1135889999999999999999999999 999999999984 7889999999
Q ss_pred EcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 262 FAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 262 f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
|.+.++|.+|+. |||..++|+.|.|.||
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999998 9999999999999997
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=3.8e-31 Score=228.88 Aligned_cols=173 Identities=25% Similarity=0.333 Sum_probs=145.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+ ++++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|.+|++ +||..+.|++|.|.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34689999999999 99999999999999999999999876 6899999999999999998 9999999999999998
Q ss_pred CCCCCCCCC------------------CCCCCc---ccccccccceEEEcCCCCCCCHHHHHHHhhhhcCc-ceeEEEEe
Q 022058 191 KTAILPVNP------------------TFLPRS---EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVTRLRLL 248 (303)
Q Consensus 191 ~~~~~~~~~------------------~~~~~~---~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~i~~v~i~ 248 (303)
......... .+.... ......+.++|||+|||..+++++|+++|++| | .|..+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~ 185 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFF 185 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEEEEEC
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeEEEEE
Confidence 654211000 000000 00112346899999999999999999999999 9 99999997
Q ss_pred cCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC-CeeeEEeecCCCC
Q 022058 249 GDHVHSTRIAFVEFAVAESAILALN-CSGMVLG-SQPIRVSPSKTPV 293 (303)
Q Consensus 249 ~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~-g~~l~v~~a~~~~ 293 (303)
++ ++|+|||+|.+.++|.+|+. |||..++ |+.|+|.|+++++
T Consensus 186 ~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 186 QK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229 (229)
T ss_dssp SS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred EC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCCC
Confidence 64 24699999999999999999 9999999 9999999999864
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=1.6e-31 Score=225.61 Aligned_cols=171 Identities=25% Similarity=0.334 Sum_probs=144.7
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
.+++|||+|||+ ++++++|+++|+.||.|.+|.++.+. +|||||+|.+.++|.+|+. |||..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 468999999999 99999999999999999999998876 6899999999999999998 999999999999999865
Q ss_pred CCCCCCC------------------CCCCCc---ccccccccceEEEcCCCCCCCHHHHHHHhhhhcCc-ceeEEEEecC
Q 022058 193 AILPVNP------------------TFLPRS---EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVTRLRLLGD 250 (303)
Q Consensus 193 ~~~~~~~------------------~~~~~~---~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~i~~v~i~~d 250 (303)
....... .+.+.. ......+.++|||+|||..+++++|+++|++| | .|..+.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~~ 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQK 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESST
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEeC
Confidence 4211100 000000 00112347899999999999999999999999 9 9999999775
Q ss_pred CCCcccEEEEEEcCHHHHHHHHH-hCCceeC-CeeeEEeecCCCC
Q 022058 251 HVHSTRIAFVEFAVAESAILALN-CSGMVLG-SQPIRVSPSKTPV 293 (303)
Q Consensus 251 ~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~-g~~l~v~~a~~~~ 293 (303)
. +|+|||+|.+.++|.+|+. |||..++ |+.|+|.|+++++
T Consensus 157 ~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 157 D---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198 (198)
T ss_dssp T---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCCC
T ss_pred C---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecccC
Confidence 3 5799999999999999999 9999999 9999999999864
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=1.8e-31 Score=238.79 Aligned_cols=160 Identities=20% Similarity=0.320 Sum_probs=141.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
.+...++|||+|||+++|+++|+++|+.||.|.+|.++.+..+++|||||+|.+.++|.+|+++|+..+.|++|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~- 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL- 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC-
Confidence 3446899999999999999999999999999999999998888899999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCc-ceeEEEEecCC-CCcccEEEEEEcCHHHHH
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVTRLRLLGDH-VHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~i~~v~i~~d~-~~~~g~afV~f~~~e~A~ 269 (303)
..++|||+|||..+++++|+++|++| | .|..|.++++. |.++|||||+|.+.++|.
T Consensus 116 --------------------~~~~l~v~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 116 --------------------TECTLWMTNFPPSYTQRNIRDLLQDI--NVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp --------------------CSCEEEEECCCTTCCHHHHHHHHHHT--TCCCCEEECC-------CCEEEEECSSHHHHH
T ss_pred --------------------CCCEEEEECCCCCCCHHHHHHHHHHh--CCCeEEEEEEeCCCCCcceEEEEEECCHHHHH
Confidence 23789999999999999999999999 9 99999999986 788999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 270 LALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 270 ~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
+|+. |||..+.|+.|.|.++.|...
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 9999 999999999999999987654
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.1e-30 Score=232.45 Aligned_cols=173 Identities=24% Similarity=0.359 Sum_probs=144.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 022058 112 EDSVRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVR 186 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~ 186 (303)
+....++|||+|||+++++++|+ ++|+.||.|.+|++++ ...++|||||+|.+.++|.+|++ |||..+.|+.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 34568999999999999999977 8999999999999986 23379999999999999999997 999999999999
Q ss_pred EeecCCCCCCC---CCCCC-------------------------------------------------------------
Q 022058 187 VLPSKTAILPV---NPTFL------------------------------------------------------------- 202 (303)
Q Consensus 187 v~~~~~~~~~~---~~~~~------------------------------------------------------------- 202 (303)
|.++....... ...+.
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99985432100 00000
Q ss_pred -------------CC--------------------cccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEec
Q 022058 203 -------------PR--------------------SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLG 249 (303)
Q Consensus 203 -------------~~--------------------~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~ 249 (303)
+. .........++|||+|||..+++++|+++|++| |.|.+|.|.+
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~~~ 241 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEEec
Confidence 00 000122346889999999999999999999999 9999999997
Q ss_pred CCCCcccEEEEEEcCHHHHHHHHH-hCCceeC-CeeeEEeecC
Q 022058 250 DHVHSTRIAFVEFAVAESAILALN-CSGMVLG-SQPIRVSPSK 290 (303)
Q Consensus 250 d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~-g~~l~v~~a~ 290 (303)
+. +|||||+|.+.++|.+|+. |||..+. |+.|+|.|++
T Consensus 242 ~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 75 4699999999999999999 9999999 9999999986
No 19
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=4.6e-32 Score=232.12 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=132.5
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc--
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~-- 97 (303)
.+|||+|||+++|+++|+++|++||+|.+|+|++++.++.++ ||+| .+ .+ +|.+|+..+++
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F-----~~-----~~----~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF-----QQ-----PA----DAERALDTMNFDV 81 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE-----SS-----HH----HHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcccccccee-----CC-----HH----HHHHHHHHhhhhh
Confidence 379999999999999999999999999999999998766554 9999 88 78 89999998887
Q ss_pred --CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH
Q 022058 98 --GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 98 --g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~ 174 (303)
|+. .+..............++|||+|||+++++++|+++|+.||.|.+|+|+++..+++|||||+|.+.++|.+|++
T Consensus 82 ~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 82 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp ETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHH
T ss_pred cCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHH
Confidence 332 11111111111122467899999999999999999999999999999999987799999999999999999998
Q ss_pred -hCCcccCCeeEEEeecCC
Q 022058 175 -LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 175 -l~g~~~~g~~i~v~~~~~ 192 (303)
|||..|.|++|.|.++.+
T Consensus 162 ~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 162 KMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHTTCEETTEECEEEECCC
T ss_pred HhCCCEECCEEEEEEEcCC
Confidence 999999999999999854
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=8.4e-30 Score=226.96 Aligned_cols=154 Identities=20% Similarity=0.253 Sum_probs=141.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
..+++|||+|||+++|+++|+++|+.|| |.+|.+ ..++|||||+|.+.++|.+|+. +||..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 3678999999999999999999999999 999988 3367999999999999999998 99999999999999852
Q ss_pred CCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHH
Q 022058 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~ 270 (303)
...+|||+|||..+++++|+++|++| |.|..+.++.+. |.++|||||+|.+.++|.+
T Consensus 94 -------------------~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 -------------------TDALLCVANLPPSLTQQQFEELVRPF--GSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp -------------------CSCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------CCCEEEEcCCCCcCCHHHHHHHHHhc--CCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 23789999999999999999999999 999999999874 7899999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCC
Q 022058 271 ALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 271 Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
|+. |||..++|+.|.|.++.+...
T Consensus 153 A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 153 AKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCCC
Confidence 997 999999999999999976653
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=7.5e-30 Score=225.05 Aligned_cols=156 Identities=27% Similarity=0.388 Sum_probs=141.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+. +||..+.|++|.|.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3446789999999999999999999999999999999653 6899999999999999998 9999999999999997
Q ss_pred CCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHH
Q 022058 191 KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAI 269 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~ 269 (303)
.+ ..+|||+|||..+++++|+++|++| |.|.+|.|+++. |.++|||||+|.+.++|.
T Consensus 94 ~~--------------------~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 94 TH--------------------GAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp CC--------------------SSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred cc--------------------CCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 42 3689999999999999999999999 999999999885 789999999999999999
Q ss_pred HHHH-h-CCceeC---CeeeEEeecCCCC
Q 022058 270 LALN-C-SGMVLG---SQPIRVSPSKTPV 293 (303)
Q Consensus 270 ~Ai~-l-~g~~~~---g~~l~v~~a~~~~ 293 (303)
+|+. | +|..+. ++.|.|.++.+..
T Consensus 152 ~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 152 KALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9998 8 555554 9999999997653
No 22
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=212.13 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=131.5
Q ss_pred CCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhccc----
Q 022058 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (303)
Q Consensus 24 ~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~---- 97 (303)
+|||+|||+++|+++|+++|++||+|.+|+++.++.++.++ ||+| .+ .+ +|.+|+..+++
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f-----~~-----~~----~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEY-----HQ-----SH----DANIALQTLNGKQIE 67 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEE-----SS-----HH----HHHHHHHHHTTCEET
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEe-----CC-----HH----HHHHHHHHcCCCccC
Confidence 68999999999999999999999999999999998766554 9999 88 78 89999988887
Q ss_pred CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH
Q 022058 98 GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN 174 (303)
Q Consensus 98 g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~ 174 (303)
|+. .+..............++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+|+.
T Consensus 68 g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 68 NNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 332 222211222233446788999999999999999999999999999999998654 78999999999999999998
Q ss_pred -hCCcccCCeeEEEeecC
Q 022058 175 -LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 175 -l~g~~~~g~~i~v~~~~ 191 (303)
|||..+.|++|.|.|++
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 99999999999999975
No 23
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=8.7e-30 Score=210.09 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=129.0
Q ss_pred CCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCC---CCc--eeeeecchhhhhhchhhhccccchHHhhhhccc
Q 022058 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH---TDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (303)
Q Consensus 23 ~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~ 97 (303)
.+|||+|||+++|+++|+++|++||+|.+|++++++.++ .++ ||+| .+ .+ +|++|+..+++
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f-----~~-----~~----~A~~A~~~l~~ 69 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF-----YT-----RK----AALEAQNALHN 69 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEE-----SS-----HH----HHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEE-----CC-----HH----HHHHHHHHhcC
Confidence 479999999999999999999999999999999998874 233 9999 88 78 89999988876
Q ss_pred CC-----C-CCCch-hhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHH
Q 022058 98 GR-----K-RLSGR-AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGA 169 (303)
Q Consensus 98 g~-----~-~~~~~-~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A 169 (303)
.. . .+... ...........++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 70 MKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp TCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred cEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHH
Confidence 21 1 11111 1111222336788999999999999999999999999999999998765 799999999999999
Q ss_pred HHHHH-hCCcccC---CeeEEEeecC
Q 022058 170 RAALN-LGGTMLG---YYPVRVLPSK 191 (303)
Q Consensus 170 ~~Ai~-l~g~~~~---g~~i~v~~~~ 191 (303)
.+|+. |||..+. +++|.|.|++
T Consensus 150 ~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 150 QTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99998 9998776 4999999873
No 24
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.6e-29 Score=207.32 Aligned_cols=155 Identities=19% Similarity=0.310 Sum_probs=130.5
Q ss_pred CCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc
Q 022058 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (303)
Q Consensus 21 ~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~ 97 (303)
.+.+|||+|||+++|+++|+++|++||+|.+|++++++.++.++ ||+| .+ .+ +|++|+..+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f-----~~-----~~----~A~~a~~~l~~ 67 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDF-----TS-----EM----DSQRAIKVLNG 67 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEE-----SS-----HH----HHHHHHHHHTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEE-----CC-----HH----HHHHHHHhcCC
Confidence 45689999999999999999999999999999999987654433 9999 88 78 89999988877
Q ss_pred ----CCCCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHH
Q 022058 98 ----GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARA 171 (303)
Q Consensus 98 ----g~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~ 171 (303)
|+. +..............++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+
T Consensus 68 ~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 68 ITVRNKR-LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CEETTEE-CEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CEeCCcE-EEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 322 11111112223446789999999999999999999999999999999998743 78999999999999999
Q ss_pred HHH-hCCcccCC--eeEEEeec
Q 022058 172 ALN-LGGTMLGY--YPVRVLPS 190 (303)
Q Consensus 172 Ai~-l~g~~~~g--~~i~v~~~ 190 (303)
|+. |||..+.| ++|.|.++
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 999 99999987 99999875
No 25
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=3.5e-30 Score=211.12 Aligned_cols=155 Identities=11% Similarity=0.127 Sum_probs=128.2
Q ss_pred CCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc-
Q 022058 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ- 97 (303)
Q Consensus 22 ~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~- 97 (303)
+.+|||+|||+++|+++|+++|++||+|.+|++++++.++.++ ||+| .+ .+ +|++|+...+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f-----~~-----~~----~a~~A~~~~~~~ 68 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF-----EK-----PS----SVDEVVKTQHIL 68 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEE-----SS-----TH----HHHHHHHSCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEE-----cc-----HH----HHHHHHhccccc
Confidence 4489999999999999999999999999999999997654443 9999 77 77 88888876221
Q ss_pred -CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHH
Q 022058 98 -GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173 (303)
Q Consensus 98 -g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai 173 (303)
|+. .+..... .......++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+|+
T Consensus 69 ~g~~i~v~~~~~--~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 69 DGKVIDPKRAIP--RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp TTEECCCEECCC--HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred CCeEcccccccc--hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 333 1111111 111224678999999999999999999999999999999998643 8999999999999999999
Q ss_pred HhCCcccCCeeEEEeecCC
Q 022058 174 NLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 174 ~l~g~~~~g~~i~v~~~~~ 192 (303)
++++..+.|++|.|.++.+
T Consensus 147 ~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 147 QNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCSEECSSSSCEEEEECCC
T ss_pred hCCCEEeCCeEEEEeecCC
Confidence 9999999999999999864
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.9e-29 Score=215.29 Aligned_cols=162 Identities=14% Similarity=0.220 Sum_probs=132.3
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhcc
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~ 96 (303)
..+.+|||+|||+++|+++|+++|++||+|.+|+++.+..++..+ ||+| .+ .+ +|.+|+..++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f-----~~-----~~----~A~~A~~~l~ 91 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY-----EV-----PE----AAQLALEQMN 91 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEE-----SS-----HH----HHHHHHHHHS
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEe-----CC-----HH----HHHHHHHHcc
Confidence 344589999999999999999999999999999999988544333 9999 88 88 8999999887
Q ss_pred c----CCC-CCCchhhh---------hccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEE
Q 022058 97 Q----GRK-RLSGRAFR---------AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAF 160 (303)
Q Consensus 97 ~----g~~-~~~~~~~~---------~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~f 160 (303)
+ |+. .+...... ........++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++||||
T Consensus 92 ~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 171 (216)
T 2qfj_A 92 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGF 171 (216)
T ss_dssp SCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEE
T ss_pred CCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEE
Confidence 6 333 11111000 0112245689999999999999999999999999999999998654 789999
Q ss_pred EEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCC
Q 022058 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAIL 195 (303)
Q Consensus 161 V~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~ 195 (303)
|+|.+.++|.+|+. |||..+.|+.|.|.++.+...
T Consensus 172 V~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 172 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999 999999999999999876543
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=6.2e-29 Score=208.96 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=127.1
Q ss_pred CCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc
Q 022058 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (303)
Q Consensus 21 ~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~ 97 (303)
.+.+|||+|||+++|+++|+++|++||+|.+|+|+.++.++.++ ||+| .+ .+ +|.+|+.. ++
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f-----~~-----~~----~A~~A~~~-~~ 76 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-----AT-----VE----EVDAAMNA-RP 76 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE-----SS-----HH----HHHHHHHT-CS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEe-----CC-----HH----HHHHHHhc-CC
Confidence 34489999999999999999999999999999999998765544 9999 77 77 88888876 32
Q ss_pred ----CCC-CCCch--h--hhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCH
Q 022058 98 ----GRK-RLSGR--A--FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166 (303)
Q Consensus 98 ----g~~-~~~~~--~--~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~ 166 (303)
|+. .+... . ..........++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.
T Consensus 77 ~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 77 HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 332 11110 0 111112235689999999999999999999999999999999998644 799999999999
Q ss_pred HHHHHHHHhCCcccCCeeEEEeecCCC
Q 022058 167 HGARAALNLGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 167 ~~A~~Ai~l~g~~~~g~~i~v~~~~~~ 193 (303)
++|.+|+..++..+.|+.|.|.++.+.
T Consensus 157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHHHHHHHCSCCEETTEECEEEECC--
T ss_pred HHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 999999997899999999999998654
No 28
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=6.7e-29 Score=203.04 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=128.2
Q ss_pred CCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc---eeeeecchhhhhhchhhhccccchHHhhhhccc-
Q 022058 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH---HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ- 97 (303)
Q Consensus 22 ~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~---~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~- 97 (303)
+.+|||+|||+++|+++|+++|++||+|.+|++++++.++.++ ||+| .+ .+ +|.+|+..+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f-----~~-----~~----~A~~a~~~l~~~ 67 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY-----ID-----PK----DAEKAINTLNGL 67 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEE-----SS-----HH----HHHHHHHHHTTC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEE-----CC-----HH----HHHHHHHHcCCC
Confidence 3489999999999999999999999999999999998555443 9999 88 88 89999998887
Q ss_pred ---CCCCCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHH
Q 022058 98 ---GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172 (303)
Q Consensus 98 ---g~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~A 172 (303)
|+. +..............++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+|
T Consensus 68 ~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 68 RLQTKT-IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp EETTEE-CEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred ccCCce-EEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 322 11111111122335788999999999999999999999999999999998744 689999999999999999
Q ss_pred HH-hCCcccCCee--EEEeec
Q 022058 173 LN-LGGTMLGYYP--VRVLPS 190 (303)
Q Consensus 173 i~-l~g~~~~g~~--i~v~~~ 190 (303)
+. |||..+.|+. |.|.|+
T Consensus 147 ~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 147 IKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCccCCCccceEEEeC
Confidence 99 9999999965 888874
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=3e-27 Score=194.56 Aligned_cols=149 Identities=14% Similarity=0.228 Sum_probs=123.3
Q ss_pred CCCCcccccchhhhHHHHHHHHhcc----C-------CcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHH
Q 022058 22 NNNLETKKSESEFTVQKLVDMFTKL----N-------PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90 (303)
Q Consensus 22 ~~~~~~~nl~~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~ 90 (303)
+.+|||+|||+++|+++|+++|++| | +|.++++.+++ ...||+| .+ .+ +|++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~---g~afV~f-----~~-----~~----~A~~ 66 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK---NFAFLEF-----RS-----VD----ETTQ 66 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT---TEEEEEE-----SS-----HH----HHHH
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC---CEEEEEe-----CC-----HH----HHHH
Confidence 3489999999999999999999999 6 77777776542 1129999 88 88 8999
Q ss_pred hhhhccc----CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEe
Q 022058 91 RRNNFNQ----GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEF 163 (303)
Q Consensus 91 a~~~~~~----g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f 163 (303)
|+ .+++ |+. .+.. ..........++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|
T Consensus 67 A~-~~~~~~~~g~~i~v~~--~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRR--PHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp HG-GGTTCEETTEECEEEC--CSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred HH-HhCCcEecCceeeecC--CcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEe
Confidence 99 7776 332 1111 111223345788999999999999999999999999999999998643 799999999
Q ss_pred cCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 164 ADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 164 ~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.+.++|.+|+. |||..+.|++|.|.++
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999998 9999999999999986
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=3.4e-27 Score=200.72 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=122.1
Q ss_pred CCCCcccccc-hhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 22 NNNLETKKSE-SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 22 ~~~~~~~nl~-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
+.+|||+||| +++|+++|+++|++||+|.+|++++++. ...||+| .+ .+ +|++|+..||+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~--g~afV~f-----~~-----~~----~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP--GAAMVEM-----AD-----GY----AVDRAITHLNNNFM 67 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTST--TCEEEEE-----SS-----HH----HHHHHHHHHTTCEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCC--CEEEEEE-----CC-----HH----HHHHHHHHhCCCEE
Confidence 3489999999 8999999999999999999999997631 1229999 88 88 99999999987
Q ss_pred -CCC-CCC--c-----hhh-----------h-----------------hccCCCCCCEEEEcCCCCCCCHHHHHHHhhcC
Q 022058 98 -GRK-RLS--G-----RAF-----------R-----------------AQREDSVRRTVYVSDIDQNITEERLAGLFSSC 140 (303)
Q Consensus 98 -g~~-~~~--~-----~~~-----------~-----------------~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 140 (303)
|+. .+. . +.. . ..+.....++|||+|||+++|+++|+++|+.|
T Consensus 68 ~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~ 147 (205)
T 3tyt_A 68 FGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL 147 (205)
T ss_dssp TTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc
Confidence 332 000 0 000 0 00011235689999999999999999999999
Q ss_pred Cce--eEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCe----eEEEeec
Q 022058 141 GQV--VDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYY----PVRVLPS 190 (303)
Q Consensus 141 G~i--~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~----~i~v~~~ 190 (303)
|.| .+++++.+...++|||||+|.+.++|.+||. |||..+.|+ ++.|+++
T Consensus 148 G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 148 GVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp TCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999 8999988875567999999999999999998 999999874 6666653
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.5e-27 Score=197.15 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=122.7
Q ss_pred cCCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCc--eeeeecchhhhhhchhhhccccchHHhhhhccc
Q 022058 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDH--HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (303)
Q Consensus 20 ~~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~--~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~ 97 (303)
..+.+|||+|||+++|+++|+++|++||+|..+.+.....+..++ ||+| .+ .+ +|.+|+ .+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f-----~~-----~~----~a~~A~-~l~g 75 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDF-----ES-----AE----DLEKAL-ELTG 75 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEE-----SS-----HH----HHHHHH-HGGG
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEE-----CC-----HH----HHHHHH-hcCC
Confidence 344589999999999999999999999999884444333343334 9999 88 88 899999 5776
Q ss_pred ----CCC-CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHH
Q 022058 98 ----GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172 (303)
Q Consensus 98 ----g~~-~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~A 172 (303)
|+. .+..............++|||+|||+++++++|+++|+.||.|..+ ...+.++|||||+|.+.++|.+|
T Consensus 76 ~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 76 LKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp EEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHH
T ss_pred CEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHH
Confidence 443 2222222222233457899999999999999999999999998766 33334899999999999999999
Q ss_pred HH-hCCcccCCeeEEEeecCC
Q 022058 173 LN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 173 i~-l~g~~~~g~~i~v~~~~~ 192 (303)
+. |||..+.|++|.|.++.+
T Consensus 153 ~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 153 LEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHTEEEETTEEEEEEECSS
T ss_pred HHHhCCCEECCeEEEEEecCC
Confidence 99 999999999999999854
No 32
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=4.2e-27 Score=198.05 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=122.2
Q ss_pred CCCCcccccchhhhHHHHHHHHhccC-----------CcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHH
Q 022058 22 NNNLETKKSESEFTVQKLVDMFTKLN-----------PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90 (303)
Q Consensus 22 ~~~~~~~nl~~~~t~~~L~~~F~~~G-----------~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~ 90 (303)
+.+|||+|||+++|+++|+++|++|| +|.++.+.+++ ...||+| .+ .+ +|++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~---g~afV~F-----~~-----~~----~A~~ 66 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK---NFAFLEF-----RS-----VD----ETTQ 66 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT---TEEEEEE-----SC-----SH----HHHH
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC---CEEEEEe-----CC-----HH----HHHH
Confidence 34899999999999999999999995 55555554331 1129999 88 77 8999
Q ss_pred hhhhccc----CCC-CCCchhh------------------hhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEE
Q 022058 91 RRNNFNQ----GRK-RLSGRAF------------------RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR 147 (303)
Q Consensus 91 a~~~~~~----g~~-~~~~~~~------------------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~ 147 (303)
|+ .+++ |+. .+..... .........++|||+|||+++++++|+++|+.||.|.++.
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 145 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE
T ss_pred HH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE
Confidence 99 7776 332 1111000 0111124578999999999999999999999999999999
Q ss_pred EeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 148 VCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 148 i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
++.+..+ ++|||||+|.+.++|.+|+. |||..+.|+.|.|.++.+.
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9998643 79999999999999999999 9999999999999998653
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=6.7e-26 Score=201.51 Aligned_cols=153 Identities=14% Similarity=0.227 Sum_probs=122.8
Q ss_pred CCCCcccccchhhhHHHHH----HHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc
Q 022058 22 NNNLETKKSESEFTVQKLV----DMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (303)
Q Consensus 22 ~~~~~~~nl~~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~ 97 (303)
+.+|||+|||+++|+++|+ ++|++||+|.+|+++++...+...||+| .+ .+ +|.+|+..+++
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f-----~~-----~~----~a~~A~~~l~g 74 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIF-----KE-----VS----SATNALRSMQG 74 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEE-----CC-----HH----HHHHHHHHhcC
Confidence 4589999999999999977 8999999999999987332221229999 88 78 89999988877
Q ss_pred ----CCC-CCCchhhhh---------------------------------------------------------------
Q 022058 98 ----GRK-RLSGRAFRA--------------------------------------------------------------- 109 (303)
Q Consensus 98 ----g~~-~~~~~~~~~--------------------------------------------------------------- 109 (303)
|+. .+.......
T Consensus 75 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 3pgw_A 75 FPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM 154 (282)
T ss_pred CeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence 322 100000000
Q ss_pred ----------------------------------------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCce
Q 022058 110 ----------------------------------------------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV 143 (303)
Q Consensus 110 ----------------------------------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i 143 (303)
.......++|||+|||+++++++|+++|+.||.|
T Consensus 155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 0111245789999999999999999999999999
Q ss_pred eEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEeecC
Q 022058 144 VDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG-YYPVRVLPSK 191 (303)
Q Consensus 144 ~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~-g~~i~v~~~~ 191 (303)
.+|+++.+. +|||||+|.+.++|.+|+. |||..+. |+.|+|.|++
T Consensus 235 ~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 235 KEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999998655 5899999999999999999 9999999 9999999975
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=9.1e-26 Score=195.05 Aligned_cols=154 Identities=24% Similarity=0.225 Sum_probs=125.1
Q ss_pred cCCCCCcccccch-hhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc-
Q 022058 20 NKNNNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ- 97 (303)
Q Consensus 20 ~~~~~~~~~nl~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~- 97 (303)
..+.+|||+|||+ ++|+++|+++|++||+|.+|++++++. ...||+| .+ .+ +|++|+..+++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~--g~afV~F-----~~-----~~----~A~~Ai~~l~g~ 95 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK--ENALVQM-----AD-----GN----QAQLAMSHLNGH 95 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTS--CCEEEEE-----SC-----HH----HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCC--CEEEEEE-----CC-----HH----HHHHHHHHhCCC
Confidence 3455899999999 999999999999999999999998861 1239999 88 88 89999988876
Q ss_pred ---CCC-CC--Cchh----hh-h--------------------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcC
Q 022058 98 ---GRK-RL--SGRA----FR-A--------------------------QREDSVRRTVYVSDIDQNITEERLAGLFSSC 140 (303)
Q Consensus 98 ---g~~-~~--~~~~----~~-~--------------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 140 (303)
|+. .+ .... .. . .......++|||+|||+.+++++|+++|+.|
T Consensus 96 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~ 175 (229)
T 2adc_A 96 KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN 175 (229)
T ss_dssp BCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT
T ss_pred eECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc
Confidence 333 11 0000 00 0 0001236889999999999999999999999
Q ss_pred C-ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEeecCC
Q 022058 141 G-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG-YYPVRVLPSKT 192 (303)
Q Consensus 141 G-~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~-g~~i~v~~~~~ 192 (303)
| .|.++.++.+ ++|||||+|.+.++|.+|+. |||..+. |++|.|.|+++
T Consensus 176 G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 176 GGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 9 9999999653 36899999999999999999 9999999 99999999864
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=7.5e-26 Score=190.79 Aligned_cols=152 Identities=24% Similarity=0.234 Sum_probs=124.2
Q ss_pred CCCCcccccch-hhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhccc---
Q 022058 22 NNNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (303)
Q Consensus 22 ~~~~~~~nl~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~--- 97 (303)
+.+|||+|||+ ++|+++|+++|++||+|.+|+++.++. ...||+| .+ .+ +|.+|+..+++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~afV~f-----~~-----~~----~a~~A~~~l~~~~~ 66 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK--ENALVQM-----AD-----GN----QAQLAMSHLNGHKL 66 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCS--SCCEEEC-----TT-----TH----HHHHHHHHHTTCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCC--CEEEEEE-----CC-----HH----HHHHHHHHhCCCee
Confidence 35899999999 999999999999999999999998862 1239999 88 77 89999988877
Q ss_pred -CCC-CCC--chh----hh-h--------------------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCC-
Q 022058 98 -GRK-RLS--GRA----FR-A--------------------------QREDSVRRTVYVSDIDQNITEERLAGLFSSCG- 141 (303)
Q Consensus 98 -g~~-~~~--~~~----~~-~--------------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G- 141 (303)
|+. .+. .+. .. . .......++|||+|||+.+++++|+++|+.||
T Consensus 67 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 146 (198)
T 1qm9_A 67 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 146 (198)
T ss_dssp SSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTS
T ss_pred cCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 332 110 000 00 0 00012377899999999999999999999999
Q ss_pred ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEeecCC
Q 022058 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG-YYPVRVLPSKT 192 (303)
Q Consensus 142 ~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~-g~~i~v~~~~~ 192 (303)
.|.++.++.+. +|||||+|.+.++|.+|+. |||..+. |++|.|.|+++
T Consensus 147 ~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 147 VVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999997643 6899999999999999999 9999999 99999999864
No 36
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=3.6e-24 Score=174.41 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=112.3
Q ss_pred EEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCC
Q 022058 145 DCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223 (303)
Q Consensus 145 ~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~ 223 (303)
++.++.+...++|||||+|.+.++|++|+. +++....+..+.+............ ..............+|||+|||.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-SHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-CCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-ccccccccCCCCCCEEEEeCCCC
Confidence 467777777899999999999999999997 7764443333333322111000000 00011111223568999999999
Q ss_pred CCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 022058 224 KVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 224 ~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 294 (303)
.+++++|+++|++| |.|..|.|++|. |.++|||||+|.+.++|.+|+. |||..++|+.|.|.++++...
T Consensus 81 ~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 81 RTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TCCHHHHHHHHHHH--SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCHHHHHHHHHhc--CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999 999999999984 7899999999999999999998 999999999999999987643
No 37
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=7.6e-25 Score=192.94 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=124.2
Q ss_pred CCCCCcccccchhhhHHHHHHHHhccCCcceeeeccCCCCCCCceeeeecchhhhhhchhhhccccchHHhhhhcccCCC
Q 022058 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (303)
Q Consensus 21 ~~~~~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g~~ 100 (303)
.+.+|||+|||+++|+++|+++|++||+|.+|++.+++ ...||+| .+ .+ +|.+|+..+++-.-
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k---g~afV~f-----~~-----~~----~A~~A~~~l~g~~i 83 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR---GFGFIRL-----ES-----RT----LAEIAKAELDGTIL 83 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT---TEEEEEC-----SS-----HH----HHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC---cEEEEEE-----CC-----HH----HHHHHHHHcCCcEE
Confidence 34479999999999999999999999999999997652 1229999 88 77 89999998887111
Q ss_pred CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-h-CC
Q 022058 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-L-GG 177 (303)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l-~g 177 (303)
..+... -......++|||+|||+.+|+++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. | ++
T Consensus 84 --~g~~l~-v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 84 --KSRPLR-IRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp --TTEECE-EEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred --CCceeE-eeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 010000 011224678999999999999999999999999999999998655 79999999999999999998 8 45
Q ss_pred cccC---CeeEEEeecCCC
Q 022058 178 TMLG---YYPVRVLPSKTA 193 (303)
Q Consensus 178 ~~~~---g~~i~v~~~~~~ 193 (303)
..+. +++|.|.++...
T Consensus 161 ~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CEESSSSCCBCEEEECCCE
T ss_pred eEEecCCCceEEEeecccc
Confidence 5554 899999998653
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=5.3e-24 Score=164.42 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
...+|||+|||+++++++|+++|+.||.|.+|+|+.+.++++|||||+|.+.++|++||+ |||..+.|++|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467899999999999999999999999999999999987799999999999999999998 9999999999999998653
Q ss_pred CCCCCCCCCCCcccccccccceEEEcCCCCCCCHH
Q 022058 194 ILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~ 228 (303)
... ............+|||+|||+.+|++
T Consensus 84 ~~~------~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KER------EAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC---------------------------------
T ss_pred ccc------ccccccccCCCCceEeCCCCCCcccc
Confidence 211 11111122344679999999999886
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=1.7e-22 Score=163.18 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=114.1
Q ss_pred EEeeCCCCCceEEEEEecCHHHHHHHHH-h-CCcccCCeeEEEeecCCCCCCCC--CCCCCCcccccccccceEEEcCCC
Q 022058 147 RVCGDPHSVLRFAFVEFADEHGARAALN-L-GGTMLGYYPVRVLPSKTAILPVN--PTFLPRSEDEREMCSRTVYCTNID 222 (303)
Q Consensus 147 ~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l-~g~~~~g~~i~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nL~ 222 (303)
.+..+....+|+++|+|.+.++|++|++ + ||..+.| +|.+.++........ ...............++|||+|||
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 3444444578999999999999999998 8 9999999 999998754311000 000111112223456899999999
Q ss_pred CCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 022058 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 223 ~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 293 (303)
+.+++++|+++|++| |.|.+|.|+++ ++|||||+|.+.++|.+|+. |||..+.|+.|+|.|++++.
T Consensus 83 ~~~t~~~l~~~F~~~--G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 83 NNGNKTELERAFGYY--GPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCCSCHHHHHHHHHH--SCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHhh--CCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999 99999999988 46799999999999999998 99999999999999998763
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=139.94 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++|+++|+++|+.||.|.+|++++|+.+ ++|||||+|.+.++|.+|++ |||..+.|++|.|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4678999999999999999999999999999999998764 79999999999999999998 99999999999999986
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=139.41 Aligned_cols=78 Identities=28% Similarity=0.458 Sum_probs=74.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+++|||+|||..+|+++|+++|++| |.|.+|.|++|+ |.++|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999999999985 7899999999999999999998 999999999999999
Q ss_pred cCC
Q 022058 289 SKT 291 (303)
Q Consensus 289 a~~ 291 (303)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 986
No 42
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=8.4e-20 Score=148.44 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=99.1
Q ss_pred eeeeccCCCCCCCc-eeeeecchhhhhhchhhhccccchHHhhhhcccC-----CCCC-----------CchhhhhccCC
Q 022058 51 KEFFPSYYHQHTDH-HFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG-----RKRL-----------SGRAFRAQRED 113 (303)
Q Consensus 51 ~v~i~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~A~~a~~~~~~g-----~~~~-----------~~~~~~~~~~~ 113 (303)
++.|+.+.....+. ||+| .+ .+ +|++|+..+++. .... ...........
T Consensus 2 ~~kl~ln~~~~~G~~fV~f-----~~-----~~----~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEA-----VD-----AA----TAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDV 67 (158)
T ss_dssp EEEEEEECSSCEEEEEEEC-----SS-----HH----HHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCC
T ss_pred cEEEEecCccccchhHHHH-----HH-----HH----hHHHHHHhhcccCCCCCcccccCccccccccccccccccccCC
Confidence 45666665533333 9999 88 77 888888777641 1100 00000111122
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34788999999999999999999999999999999998643 89999999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
++.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.8e-19 Score=137.05 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=74.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
..+|||+|||+.+++++|+++|++| |.|.+|+|++|.++++|||||+|.+.++|.+|+. |||..++|+.|+|.++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc--CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999 9999999999988899999999999999999998 999999999999999986
Q ss_pred CC
Q 022058 292 PV 293 (303)
Q Consensus 292 ~~ 293 (303)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 44
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.6e-19 Score=143.20 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=79.8
Q ss_pred eEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhh
Q 022058 157 RFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235 (303)
Q Consensus 157 G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~ 235 (303)
-+.|.+|++...+..|+. ++|....|+. ...+.. + .......++|||+|||..+++++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~-----------~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR-----------P---PPDVEGMTSLKVDNLTYRTSPDTLRRVFE 69 (135)
T ss_dssp -------------------------------CCSCC-----------S---CSSGGGCCCEEEECCCSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCC-----------C---CCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 368888999999999998 8876665543 111111 1 11123458999999999999999999999
Q ss_pred hhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 022058 236 AACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRPRVT 298 (303)
Q Consensus 236 ~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~r~~ 298 (303)
+| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++++...+...
T Consensus 70 ~~--G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~~ 133 (135)
T 2lea_A 70 KY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 133 (135)
T ss_dssp GG--SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTTC
T ss_pred hc--CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCccc
Confidence 99 999999999884 7899999999999999999998 9999999999999999876555433
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=135.23 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|++||.|.+|.|++|+.+ ++|||||+|.+.++|.+|++ |||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999875 79999999999999999998 9999999999999997
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 46
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=4.2e-19 Score=145.54 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=76.4
Q ss_pred EEecCHHHHHHHHH-hCCcccC--CeeEEEeecCCCCC-CCCCCC--C---CCcccccccccceEEEcCCCCCCCHHHHH
Q 022058 161 VEFADEHGARAALN-LGGTMLG--YYPVRVLPSKTAIL-PVNPTF--L---PRSEDEREMCSRTVYCTNIDKKVPQAEVK 231 (303)
Q Consensus 161 V~f~~~~~A~~Ai~-l~g~~~~--g~~i~v~~~~~~~~-~~~~~~--~---~~~~~~~~~~~~~l~V~nL~~~~t~~~L~ 231 (303)
.+|++.++|..|+. +++.... |+.+.+.+...... ...+.. . ....+......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 68999999999998 8887665 67766665322110 000000 0 00111223456789999999999999999
Q ss_pred HHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 022058 232 QFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRPRVT 298 (303)
Q Consensus 232 ~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~r~~ 298 (303)
.+|++| |.|..|.|+.+. |.++|||||+|.+.++|.+|+. |||..|.|+.|.|.|+.+...++..
T Consensus 91 ~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~ 158 (165)
T 1rk8_A 91 EKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVK 158 (165)
T ss_dssp HHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-----
T ss_pred HHhhcC--CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCCC
Confidence 999999 999999999884 7889999999999999999998 9999999999999999876654433
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-18 Score=129.79 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=79.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+++.+.++|||||+|.+.++|.+|+. |||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 356899999999999999999999999 9999999999987789999999999999999998 9999999999999999
Q ss_pred CCCCCCCCC
Q 022058 290 KTPVRPRVT 298 (303)
Q Consensus 290 ~~~~~~r~~ 298 (303)
+++...+..
T Consensus 91 ~~~~~~~~~ 99 (103)
T 2cqi_A 91 TTPSSQKSG 99 (103)
T ss_dssp CCTTCCCCC
T ss_pred CCCcccccC
Confidence 987655443
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=132.64 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCc-ceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-h-CCceeCCeeeEEee
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGG-EVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-C-SGMVLGSQPIRVSP 288 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G-~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l-~g~~~~g~~l~v~~ 288 (303)
++|||+|||+.+|+++|+++|++| | .|.+|+|++|+ |.++|||||+|.+.++|.+|++ | |+..++|+.|+|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~--G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH--GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH--TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh--CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 689999999999999999999999 9 89999999985 7899999999999999999998 6 56789999999999
Q ss_pred cCCCCC
Q 022058 289 SKTPVR 294 (303)
Q Consensus 289 a~~~~~ 294 (303)
++|..+
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987643
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=129.17 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=80.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45899999999999999999999999 999999999985 7889999999999999999997 999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRPG 301 (303)
Q Consensus 289 a~~~~~~r~~r~~ 301 (303)
+++........++
T Consensus 85 a~~~~~~~~~~~~ 97 (99)
T 1whw_A 85 STIKKEASQSGPS 97 (99)
T ss_dssp CCCCSTTCCCCCC
T ss_pred cCCCcccccCCCC
Confidence 9987665554444
No 50
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=3.6e-19 Score=136.97 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=90.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+...++|||+|||+++++++|+++|+.||.|.+|.++.+.. ++|||||+|.+.++|.+|+. |||..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999997644 58999999999999999999 99999999999999975
Q ss_pred CCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhhhhcCc
Q 022058 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG 240 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G 240 (303)
+... . .+++...++++|.++|++| |
T Consensus 84 ~~~~------------------~----~~~~~~~~~~~l~~~~~~~--g 108 (115)
T 3lqv_A 84 ANRA------------------F----QKMDTKKKEEQLKLLKEKY--G 108 (115)
T ss_dssp HHHH------------------T----TTSCHHHHHHHHHHHHHHH--C
T ss_pred CChh------------------h----hhhhHhHhHHHHHHHHHHh--C
Confidence 3210 0 5677778899999999998 7
No 51
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=133.20 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=81.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAIL 195 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~ 195 (303)
++|||+|||+++++++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999987 68999999999999999999 999999999999999876532
Q ss_pred CCCCCCCCCcccccccccceEEEcCCC
Q 022058 196 PVNPTFLPRSEDEREMCSRTVYCTNID 222 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~V~nL~ 222 (303)
.... ...........+|||+||+
T Consensus 78 ~~~~----~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRF----DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCC----CSCCCSCCCCSCCCSCCCC
T ss_pred cccC----CCCCccccCCCceecCCCC
Confidence 1110 0111112235789999997
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-18 Score=128.52 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=77.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+++.+.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 356899999999999999999999999 9999999999986799999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 022058 290 KTPVRPR 296 (303)
Q Consensus 290 ~~~~~~r 296 (303)
++.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 8775443
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=130.38 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=77.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+.+.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356899999999999999999999999 9999999999877889999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 022058 290 KTPVRPR 296 (303)
Q Consensus 290 ~~~~~~r 296 (303)
++...++
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8765443
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=127.24 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=78.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..+.+++++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45899999999999999999999999 999999999985 7889999999999999999999 999999999999999
Q ss_pred cCCCCCCCCCC
Q 022058 289 SKTPVRPRVTR 299 (303)
Q Consensus 289 a~~~~~~r~~r 299 (303)
+++...++...
T Consensus 82 a~~~~~~~~~~ 92 (95)
T 2dnz_A 82 VTERLDGGSGP 92 (95)
T ss_dssp SSCCCCCCCCC
T ss_pred cccccCCCCCC
Confidence 98776555433
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=132.53 Aligned_cols=78 Identities=24% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-ceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-h-CCcccCCeeEEEeec
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L-GGTMLGYYPVRVLPS 190 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l-~g~~~~g~~i~v~~~ 190 (303)
+.+|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+ ++|||||+|.+.++|.+|++ + |+..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999998764 89999999999999999998 6 567899999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=130.47 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=80.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45899999999999999999999999 999999999984 6789999999999999999997 999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRPG 301 (303)
Q Consensus 289 a~~~~~~r~~r~~ 301 (303)
+++....+..+.+
T Consensus 89 a~~~~~~~~~~~~ 101 (102)
T 1x5s_A 89 AGKSSDNRSGPSS 101 (102)
T ss_dssp EECCCCCCCCCCC
T ss_pred CCCCCCCCCCCCC
Confidence 9988776655443
No 57
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=2.6e-18 Score=129.94 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=78.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCC---eeeE
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGS---QPIR 285 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g---~~l~ 285 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 456899999999999999999999999 999999999985 7889999999999999999998 99999988 9999
Q ss_pred EeecCCCCCCCCCCCC
Q 022058 286 VSPSKTPVRPRVTRPG 301 (303)
Q Consensus 286 v~~a~~~~~~r~~r~~ 301 (303)
|.++++.. .+.+++|
T Consensus 91 V~~a~~~~-~~~~~~G 105 (105)
T 2dnh_A 91 VKFADTDK-ESGPSSG 105 (105)
T ss_dssp EEESCSSC-CCSCSCC
T ss_pred EEECccCc-ccCCCCC
Confidence 99998765 4444443
No 58
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=128.42 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=78.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEE-EEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL-RLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v-~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
+.++|||+|||..+++++|+++|++| |.|..+ .|++++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45899999999999999999999999 999999 999984 7889999999999999999999 99999999999999
Q ss_pred ecCCCCCCCCCCCC
Q 022058 288 PSKTPVRPRVTRPG 301 (303)
Q Consensus 288 ~a~~~~~~r~~r~~ 301 (303)
++++....+ .|.|
T Consensus 82 ~a~~~~~~~-~~~g 94 (96)
T 1x5t_A 82 YAFKKDSKG-SGPS 94 (96)
T ss_dssp ESCCCCCCC-CCCC
T ss_pred EecccCCCC-CCCC
Confidence 998776443 3443
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=129.40 Aligned_cols=82 Identities=30% Similarity=0.458 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+..+++|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 445689999999999999999999999999999999999987789999999999999999999 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
...
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=3.1e-18 Score=131.72 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=77.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
....++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456899999999999999999999999 999999999985 7899999999999999999998 9999999999999
Q ss_pred eecCCCCCCC
Q 022058 287 SPSKTPVRPR 296 (303)
Q Consensus 287 ~~a~~~~~~r 296 (303)
.|+++....+
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9998775443
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=127.99 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=77.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45899999999999999999999999 999999999985 77899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 022058 290 KTPVRPR 296 (303)
Q Consensus 290 ~~~~~~r 296 (303)
+++...+
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8775444
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-18 Score=128.44 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.+..+++|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 344678999999999999999999999999999999999887789999999999999999998 9999999999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7543
No 63
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=131.81 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCc--eeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCc----ccCCeeE
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQ--VVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGT----MLGYYPV 185 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~----~~~g~~i 185 (303)
.-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+ ++|||||+|.+.++|.+|++ |||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4678999999999999999999999995 679999998865 89999999999999999998 9987 4889999
Q ss_pred EEeecCC
Q 022058 186 RVLPSKT 192 (303)
Q Consensus 186 ~v~~~~~ 192 (303)
.|.|++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999863
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.5e-18 Score=130.32 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=79.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356899999999999999999999999 999999999984 7889999999999999999998 99999999999999
Q ss_pred ecCCCCCCCCCC
Q 022058 288 PSKTPVRPRVTR 299 (303)
Q Consensus 288 ~a~~~~~~r~~r 299 (303)
|+++....+...
T Consensus 91 ~a~~~~~~~~~~ 102 (115)
T 2dgo_A 91 WATRKPPAPKST 102 (115)
T ss_dssp ESSCCCCCSCCC
T ss_pred EccCCCCCCccc
Confidence 998776555443
No 65
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=131.69 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=74.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||+.+++++|+++|++| |.|.+|.|++|+ ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45899999999999999999999999 999999999985 7899999999999999999998 999999999999999
Q ss_pred cCC
Q 022058 289 SKT 291 (303)
Q Consensus 289 a~~ 291 (303)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=128.37 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=77.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC---C--CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH---V--HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~--~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|+++. | .++|||||+|.+.++|.+|+. |||..+.|+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45899999999999999999999999 999999999874 3 789999999999999999999 999999999999
Q ss_pred EeecCCCCCCCCC
Q 022058 286 VSPSKTPVRPRVT 298 (303)
Q Consensus 286 v~~a~~~~~~r~~ 298 (303)
|.++++...++..
T Consensus 82 V~~a~~~~~~~~~ 94 (98)
T 2cpf_A 82 VRISERATKPASG 94 (98)
T ss_dssp EECSSCSSCCCCC
T ss_pred EEEccCCCCCCCC
Confidence 9999887655543
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=131.83 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++|+++|+++|+.||+|.+|.|++++.+ ++|||||+|.+.++|.+|+.+|+..+.|+.|.|.++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 3445789999999999999999999999999999999998765 899999999999999999999999999999999986
Q ss_pred C
Q 022058 191 K 191 (303)
Q Consensus 191 ~ 191 (303)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 68
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=6e-18 Score=130.09 Aligned_cols=84 Identities=27% Similarity=0.451 Sum_probs=76.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 022058 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187 (303)
Q Consensus 111 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v 187 (303)
.+....++|||+|||+++++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999998644 78999999999999999998 9999999999999
Q ss_pred eecCCCC
Q 022058 188 LPSKTAI 194 (303)
Q Consensus 188 ~~~~~~~ 194 (303)
.++....
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9987654
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=129.49 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=77.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 55899999999999999999999999 999999999884 6789999999999999999998 999999999999999
Q ss_pred cCCCCCCCC
Q 022058 289 SKTPVRPRV 297 (303)
Q Consensus 289 a~~~~~~r~ 297 (303)
++++...+.
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 987754443
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=5.2e-19 Score=130.13 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=68.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCC--ceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
.+|||+|||+++++++|+++|+.|| .|.+++++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999998754 79999999999999999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9e-18 Score=129.35 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=81.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
....++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+. ||+ .|.|+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456899999999999999999999999 999999999985 7899999999999999999999 898 899999999
Q ss_pred eecCCCCCCCCCCCC
Q 022058 287 SPSKTPVRPRVTRPG 301 (303)
Q Consensus 287 ~~a~~~~~~r~~r~~ 301 (303)
.++++...++..+++
T Consensus 91 ~~a~~~~~~~~~~~~ 105 (116)
T 2cqd_A 91 NLAYLGAKPRSLQTG 105 (116)
T ss_dssp EESTTTCCCCCCCCC
T ss_pred EEcccCCCccccCCC
Confidence 999888777776654
No 72
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=130.68 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=71.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcc--eeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCc----eeCCe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGE--VTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGM----VLGSQ 282 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~--i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~----~~~g~ 282 (303)
.-.+|||+|||+.+|+++|+++|++| |. |.+|+|++|+ |+++|||||+|.+.++|.+|++ |||. .++||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~--G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPY--ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTT--CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhh--CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34789999999999999999999999 95 6789999985 7899999999999999999998 9986 58999
Q ss_pred eeEEeecCC
Q 022058 283 PIRVSPSKT 291 (303)
Q Consensus 283 ~l~v~~a~~ 291 (303)
.|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-18 Score=128.30 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=77.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC---CCCcccEEEEEEcCHHHHHHHHH-h-CCceeCCeee
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD---HVHSTRIAFVEFAVAESAILALN-C-SGMVLGSQPI 284 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d---~~~~~g~afV~f~~~e~A~~Ai~-l-~g~~~~g~~l 284 (303)
....++|||+|||..+++++|+++|++| |.|..|.|+++ .+.++|||||+|.+.++|.+|+. | ||..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456899999999999999999999999 99999999988 47889999999999999999998 9 9999999999
Q ss_pred EEeecCCCCCCC
Q 022058 285 RVSPSKTPVRPR 296 (303)
Q Consensus 285 ~v~~a~~~~~~r 296 (303)
+|.|+++.....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998765443
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=3.3e-18 Score=126.13 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=77.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
+.++|||+|||..+++++|+++|++| |.|..+.|.++.+.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999 9999999999888899999999999999999998 99999999999999998
Q ss_pred CCCCC
Q 022058 291 TPVRP 295 (303)
Q Consensus 291 ~~~~~ 295 (303)
++..+
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76544
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=5.2e-19 Score=130.14 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=68.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCc--ceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGG--EVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G--~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+|||+|||..+++++|+++|++| | .|.++.|+.++ |+++|||||+|.+.++|.+|++ |||..++|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~--G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT--TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh--CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 579999999999999999999999 9 99999999984 7899999999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 022058 289 SKTPVRPR 296 (303)
Q Consensus 289 a~~~~~~r 296 (303)
+.|+..+.
T Consensus 80 ~~~~~~~~ 87 (90)
T 3p5t_L 80 SNKLEHHH 87 (90)
T ss_dssp C-------
T ss_pred CCCCcccc
Confidence 98876443
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.4e-18 Score=124.85 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999998654 79999999999999999997 9999999999999987
Q ss_pred C
Q 022058 191 K 191 (303)
Q Consensus 191 ~ 191 (303)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3.9e-18 Score=123.20 Aligned_cols=76 Identities=22% Similarity=0.386 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
.+|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|+. |||..+.|++|.|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 57999999999999999999999999999999998654 79999999999999999999 999999999999999864
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=125.14 Aligned_cols=78 Identities=28% Similarity=0.466 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|+. |||..+.|+.|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5788999999999999999999999999999999998644 78999999999999999999 99999999999999986
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 79
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=124.05 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=72.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45899999999999999999999999 999999999984 7889999999999999999998 999999999999999
Q ss_pred cCCC
Q 022058 289 SKTP 292 (303)
Q Consensus 289 a~~~ 292 (303)
+++.
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9864
No 80
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=126.18 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+.+|+..+.|++|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3446789999999999999999999999999999999998754 79999999999999999999999999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
+.+.
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=130.98 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=78.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45899999999999999999999999 999999999986 7889999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCC
Q 022058 290 KTPVRPRVTR 299 (303)
Q Consensus 290 ~~~~~~r~~r 299 (303)
+++......|
T Consensus 84 ~~~~~~~~~~ 93 (116)
T 2fy1_A 84 KKPSFQSGGR 93 (116)
T ss_dssp CCSSCSSSSS
T ss_pred CCCCCCCCCC
Confidence 8877554433
No 82
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-18 Score=124.91 Aligned_cols=81 Identities=31% Similarity=0.477 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999998754 79999999999999999999 9999999999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
....
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=128.99 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=75.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45899999999999999999999999 999999999885 6889999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 022058 289 SKTPVR 294 (303)
Q Consensus 289 a~~~~~ 294 (303)
+++..+
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987643
No 84
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=128.48 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
+....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4456889999999999999999999999999999999998654 79999999999999999999 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
++.+.
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98654
No 85
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=128.62 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=78.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hC------CceeCC
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CS------GMVLGS 281 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~------g~~~~g 281 (303)
.+.++|||+|||..+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|+. || |..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 356899999999999999999999999 999999999985 6789999999999999999998 99 999999
Q ss_pred eeeEEeecCCCCCCCCCC
Q 022058 282 QPIRVSPSKTPVRPRVTR 299 (303)
Q Consensus 282 ~~l~v~~a~~~~~~r~~r 299 (303)
+.|+|.++++.......+
T Consensus 91 ~~l~v~~a~~~~~~~~~~ 108 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAASGP 108 (111)
T ss_dssp CEEEEECCCCCCCCCCCC
T ss_pred EEEEEEECCCCccCCCCC
Confidence 999999998775544433
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=129.17 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG--GTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~--g~~~~g~~i~v~ 188 (303)
.+...++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++ ++ +..+.|++|.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4557899999999999999999999999999999999875 6899999999999999998 76 478999999999
Q ss_pred ecCCCC
Q 022058 189 PSKTAI 194 (303)
Q Consensus 189 ~~~~~~ 194 (303)
+++...
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 987553
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=127.62 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=76.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
.+.++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 356899999999999999999999999 999999999884 7899999999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 022058 288 PSKTPVR 294 (303)
Q Consensus 288 ~a~~~~~ 294 (303)
++++...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.7e-18 Score=124.02 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4457889999999999999999999999999999999998764 79999999999999999999888899999999987
Q ss_pred c
Q 022058 190 S 190 (303)
Q Consensus 190 ~ 190 (303)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=6.8e-18 Score=121.92 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
.+|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 689999999999999999999999 999999999884 7889999999999999999999 99999999999999998
Q ss_pred CC
Q 022058 291 TP 292 (303)
Q Consensus 291 ~~ 292 (303)
+.
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 90
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=126.83 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 114 SVRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
...++|||+|||+++++++|+ ++|+.||.|.+|.++.+..+ +|||||+|.+.++|.+|+. |||..+.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356889999999999999999 99999999999999998887 9999999999999999999 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
++++.
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 98654
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=127.07 Aligned_cols=84 Identities=27% Similarity=0.344 Sum_probs=77.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 355899999999999999999999999 999999999985 7899999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 022058 288 PSKTPVRPR 296 (303)
Q Consensus 288 ~a~~~~~~r 296 (303)
++++....+
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998775444
No 92
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=126.92 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3446789999999999999999999999999999999998844 78999999999999999998 999999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
+++.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 93
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=9.9e-19 Score=138.59 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=77.2
Q ss_pred chHHhhhhcccCCC----CCCchhhhhccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEE
Q 022058 87 NNRRRRNNFNQGRK----RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAF 160 (303)
Q Consensus 87 ~A~~a~~~~~~g~~----~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~f 160 (303)
.+..|+..+++|.. .... ..........++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++||||
T Consensus 16 ~~~~a~~~~~g~~~~g~~~~~~--~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~af 93 (135)
T 2lea_A 16 PRGSHMASMTGGQQMGRGSMSY--GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 93 (135)
T ss_dssp -------------------CCS--CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCE
T ss_pred chhhhhhhccCCCCCCCCCCCc--CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEE
Confidence 67778888877333 1111 112223345789999999999999999999999999999999988654 899999
Q ss_pred EEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCC
Q 022058 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAI 194 (303)
Q Consensus 161 V~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~ 194 (303)
|+|.+.++|.+|+. ||+..+.|++|.|.+++...
T Consensus 94 V~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 94 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp EECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999998 99999999999999987543
No 94
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=130.51 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+..+++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 344688999999999999999999999999999999999877789999999999999999999 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 95
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=126.19 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446788999999999999999999999999999999998764 78999999999999999999 99999999999999
Q ss_pred ecC
Q 022058 189 PSK 191 (303)
Q Consensus 189 ~~~ 191 (303)
+++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 975
No 96
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=126.06 Aligned_cols=82 Identities=27% Similarity=0.316 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
....++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999998744 79999999999999999997 999999999999999
Q ss_pred cCCCC
Q 022058 190 SKTAI 194 (303)
Q Consensus 190 ~~~~~ 194 (303)
+.+..
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87653
No 97
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=125.56 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=75.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 355899999999999999999999999 999999999986 7889999999999999999998 999999999999999
Q ss_pred cCCCC
Q 022058 289 SKTPV 293 (303)
Q Consensus 289 a~~~~ 293 (303)
++++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98764
No 98
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=126.51 Aligned_cols=80 Identities=28% Similarity=0.465 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3446789999999999999999999999999999999998765 79999999999999999999 999999999999998
Q ss_pred cC
Q 022058 190 SK 191 (303)
Q Consensus 190 ~~ 191 (303)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 99
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=8.8e-18 Score=126.97 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCC---eeEEE
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGY---YPVRV 187 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g---~~i~v 187 (303)
....++|||+|||+++++++|+++|+.||.|.+|.|+.++.+ ++|||||+|.+.++|.+|+. ||+..+.| ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346789999999999999999999999999999999998754 79999999999999999998 99999988 99999
Q ss_pred eecCCCC
Q 022058 188 LPSKTAI 194 (303)
Q Consensus 188 ~~~~~~~ 194 (303)
.+++...
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9987543
No 100
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.8e-18 Score=123.91 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999965 58999999999999999999 9999999999999986
No 101
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=125.94 Aligned_cols=80 Identities=24% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ ||+..+.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3446789999999999999999999999999999999998764 79999999999999999998 99999999999999
Q ss_pred ecC
Q 022058 189 PSK 191 (303)
Q Consensus 189 ~~~ 191 (303)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 102
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=7.9e-18 Score=129.45 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++.+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446789999999999999999999999999999999998754 78999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 022058 189 PSKTAI 194 (303)
Q Consensus 189 ~~~~~~ 194 (303)
++++..
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 986543
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=127.76 Aligned_cols=83 Identities=30% Similarity=0.388 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456889999999999999999999999999999999998754 79999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 022058 189 PSKTAI 194 (303)
Q Consensus 189 ~~~~~~ 194 (303)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 986543
No 104
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=8.2e-18 Score=123.97 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
....++|||+|||+++++++|+++|+.||.|.++.++.+...++|||||+|.+.++|.+|+. ||+..+.|+.|.|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34678999999999999999999999999999999998655589999999999999999999 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 105
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=126.67 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+...++|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 344688999999999999999999999999999999999833479999999999999999999 9999999999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7543
No 106
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=126.16 Aligned_cols=81 Identities=27% Similarity=0.456 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC-----CCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v 187 (303)
...++|||+|||+++++++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++|.+|+. ||+..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998765 378999999999999999999 9999999999999
Q ss_pred eecCCCC
Q 022058 188 LPSKTAI 194 (303)
Q Consensus 188 ~~~~~~~ 194 (303)
.+++...
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987653
No 107
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=124.49 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=74.3
Q ss_pred ccceEEEcCCCCCCCHHHHH----HHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 212 CSRTVYCTNIDKKVPQAEVK----QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~----~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
..++|||+|||..+++++|+ ++|++| |.|.+|.|+++... +|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44789999999999999999 999999 99999999999755 8999999999999999999 9999999999999
Q ss_pred eecCCCCC
Q 022058 287 SPSKTPVR 294 (303)
Q Consensus 287 ~~a~~~~~ 294 (303)
.++++...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99986643
No 108
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=2.9e-18 Score=138.23 Aligned_cols=77 Identities=31% Similarity=0.377 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
....++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|+. |||..+.|++|.|.++.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 346789999999999999999999999999999999877 57999999999999999998 99999999999999986
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
+
T Consensus 147 ~ 147 (150)
T 2i2y_A 147 G 147 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=125.37 Aligned_cols=80 Identities=25% Similarity=0.459 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEE-EEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-RVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
...++|||+|||+++++++|+++|+.||.|.++ .++.++.+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 99998554 79999999999999999999 999999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
+.+.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8654
No 110
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=6.2e-18 Score=122.70 Aligned_cols=77 Identities=27% Similarity=0.385 Sum_probs=72.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|.++.++++. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 55899999999999999999999999 999999998874 6789999999999999999997 999999999999999
Q ss_pred cC
Q 022058 289 SK 290 (303)
Q Consensus 289 a~ 290 (303)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 111
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=6.8e-18 Score=125.56 Aligned_cols=78 Identities=31% Similarity=0.474 Sum_probs=73.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
+++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999998654 79999999999999999998 999999999999999865
Q ss_pred C
Q 022058 193 A 193 (303)
Q Consensus 193 ~ 193 (303)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 112
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=1.2e-17 Score=126.37 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=76.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCcee---CCeee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVL---GSQPI 284 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~---~g~~l 284 (303)
...++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..+ .|+.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 355899999999999999999999999 999999999985 7899999999999999999998 999998 89999
Q ss_pred EEeecCCCCCCC
Q 022058 285 RVSPSKTPVRPR 296 (303)
Q Consensus 285 ~v~~a~~~~~~r 296 (303)
+|.++++....+
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998775443
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=127.81 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446799999999999999999999999999999999998764 78999999999999999999 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98754
No 114
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.9e-18 Score=129.68 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCC-e
Q 022058 114 SVRRTVYVSDIDQ------NITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGY-Y 183 (303)
Q Consensus 114 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g-~ 183 (303)
..+++|||+|||+ ++++++|+++|+.||.|.+|.|+.++.+ ++|||||+|.+.++|.+|++ |||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999999874 89999999999999999998 99999999 9
Q ss_pred eEEEeecC
Q 022058 184 PVRVLPSK 191 (303)
Q Consensus 184 ~i~v~~~~ 191 (303)
+|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999975
No 115
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=1e-17 Score=124.66 Aligned_cols=80 Identities=28% Similarity=0.349 Sum_probs=75.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
.++|||+|||..+++++|+++|++| |.|.++.|+.+. |.++|||||+|.+.++|.+|+. |||..++|+.|+|.++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4799999999999999999999999 999999999885 7889999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 022058 290 KTPVR 294 (303)
Q Consensus 290 ~~~~~ 294 (303)
+++..
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 87643
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=125.94 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeE--------EEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCccc
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD--------CRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTML 180 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~ 180 (303)
.+...++|||+|||+++++++|+++|+.||.|.+ ++++.++.+ ++|||||+|.+.++|.+|++ |||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4456889999999999999999999999999999 999998654 79999999999999999998 999999
Q ss_pred CCeeEEEeec
Q 022058 181 GYYPVRVLPS 190 (303)
Q Consensus 181 ~g~~i~v~~~ 190 (303)
.|+.|+|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999986
No 117
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=125.35 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=75.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|||..+++++|+++|++| |.|..|.|..+ +.++|||||+|.+.++|.+|++ ||+..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 356899999999999999999999999 99999999765 4578999999999999999997 9999999999999999
Q ss_pred CCCCCCCC
Q 022058 290 KTPVRPRV 297 (303)
Q Consensus 290 ~~~~~~r~ 297 (303)
++..++++
T Consensus 97 ~~~~~~~~ 104 (109)
T 1x4a_A 97 RSGRGTGS 104 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 87754443
No 118
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=125.84 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=76.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC---CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH---VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| | |..|.|+++. +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 45899999999999999999999999 9 9999999885 6789999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 022058 289 SKTPVRPRV 297 (303)
Q Consensus 289 a~~~~~~r~ 297 (303)
+++....++
T Consensus 91 a~~~~~~~~ 99 (104)
T 1wi8_A 91 ADQAQDKDS 99 (104)
T ss_dssp CCCCCCCCC
T ss_pred ccCCCCCCC
Confidence 987755443
No 119
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=127.00 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ ||+..+.|++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999998654 79999999999999999998 999999999999999
Q ss_pred cCCCC
Q 022058 190 SKTAI 194 (303)
Q Consensus 190 ~~~~~ 194 (303)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87553
No 120
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=128.60 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|++|++ |||..+.|+.|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999998744 89999999999999999998 9999999999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
+...
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 121
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=129.05 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=76.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
....++|||+|||..+++++|+++|++| |.|..|.++++.+.++|||||+|.+.++|.+|+. |||..++|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456899999999999999999999999 9999999999987799999999999999999998 999999999999999
Q ss_pred cCCC
Q 022058 289 SKTP 292 (303)
Q Consensus 289 a~~~ 292 (303)
+++.
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9864
No 122
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.9e-17 Score=124.75 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=76.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
.+.++|||+|||..+++++|+++|++| | |..|.|+++. ++++|||||+|.+.++|.+|+.|||..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 345899999999999999999999999 8 9999999985 7889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 022058 289 SKTPVRPR 296 (303)
Q Consensus 289 a~~~~~~r 296 (303)
+++....+
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98765433
No 123
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=127.98 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+.+++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ +||..+.|++|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999998664 78999999999999999998 99999999999999
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
++.+
T Consensus 102 ~a~~ 105 (108)
T 2jrs_A 102 HVTE 105 (108)
T ss_dssp CSCS
T ss_pred Eccc
Confidence 9854
No 124
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=9.9e-18 Score=127.82 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=76.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
....++|||+|||..+++++|+++|++| |.|..|.|+.+. |.++|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456899999999999999999999999 999999999885 7889999999999999999998 9999999999999
Q ss_pred eecCCCCC
Q 022058 287 SPSKTPVR 294 (303)
Q Consensus 287 ~~a~~~~~ 294 (303)
.|+++...
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99986543
No 125
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=6.1e-18 Score=129.01 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35788999999999999999999999999999999988654 78999999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 643
No 126
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=126.51 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ ||+..+.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999998654 79999999999999999997 999999999999999
Q ss_pred cCCCC
Q 022058 190 SKTAI 194 (303)
Q Consensus 190 ~~~~~ 194 (303)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 86543
No 127
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=127.30 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35688999999999999999999999999999999998764 78999999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 643
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=126.41 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeC-CC--CCceEEEEEecCHHHHHHHHH-h-CCcccCCeeEE
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PH--SVLRFAFVEFADEHGARAALN-L-GGTMLGYYPVR 186 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~--~~~G~~fV~f~~~~~A~~Ai~-l-~g~~~~g~~i~ 186 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+ .. .++|||||+|.+.++|.+|+. | |+..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446789999999999999999999999999999999988 33 379999999999999999998 9 99999999999
Q ss_pred EeecCCC
Q 022058 187 VLPSKTA 193 (303)
Q Consensus 187 v~~~~~~ 193 (303)
|.++.+.
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9998654
No 129
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=122.60 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=74.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
.+.++|||+|||..+++++|+++|++| |.|..|.+++++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356899999999999999999999999 999999999885 6789999999999999999999 99999999999999
Q ss_pred ecCC
Q 022058 288 PSKT 291 (303)
Q Consensus 288 ~a~~ 291 (303)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9974
No 130
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=127.01 Aligned_cols=88 Identities=11% Similarity=0.190 Sum_probs=79.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
...++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+.+||..|+|+.|+|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 346899999999999999999999999 999999999985 7889999999999999999998899999999999999
Q ss_pred cCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRP 300 (303)
Q Consensus 289 a~~~~~~r~~r~ 300 (303)
+++.......+.
T Consensus 103 a~~~~~~~~~~~ 114 (116)
T 1x4b_A 103 AVAREESGSGPS 114 (116)
T ss_dssp CSSCCCCCCSCC
T ss_pred CCCCccCCCCCC
Confidence 988765554443
No 131
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=126.24 Aligned_cols=80 Identities=30% Similarity=0.429 Sum_probs=74.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|.+|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 45899999999999999999999999 999999999885 7889999999999999999999 9999999999999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
++..
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 132
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.52 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=75.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. |.++|||||+|.+.++|.+|+. |||..+.|+.|+|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 356899999999999999999999999 999999999885 6889999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
++++..
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998654
No 133
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=7.8e-18 Score=131.56 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=78.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356899999999999999999999999 999999999884 7889999999999999999998 99999999999999
Q ss_pred ecCCCCCCCCCCC
Q 022058 288 PSKTPVRPRVTRP 300 (303)
Q Consensus 288 ~a~~~~~~r~~r~ 300 (303)
|+++...++..|.
T Consensus 98 ~a~~~~~~~~~~~ 110 (126)
T 3ex7_B 98 WCFVRGPPKGKRR 110 (126)
T ss_dssp ESEESSSCCC---
T ss_pred EecCCCCCCCCCC
Confidence 9987665554443
No 134
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=127.35 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=76.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCccee--------EEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCcee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVT--------RLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVL 279 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~--------~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~ 279 (303)
...++|||+|||..+++++|+++|++| |.|. .|.|+.+. +.++|||||+|.+.++|.+|+. |||..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQC--GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTT--SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 356899999999999999999999999 9999 69999884 7889999999999999999998 999999
Q ss_pred CCeeeEEeecCCCCCCC
Q 022058 280 GSQPIRVSPSKTPVRPR 296 (303)
Q Consensus 280 ~g~~l~v~~a~~~~~~r 296 (303)
.|+.|+|.++++.....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998775443
No 135
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=126.11 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=77.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhh-hcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCce-eCCeeeEEe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEA-ACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMV-LGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~-~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~-~~g~~l~v~ 287 (303)
+.++|||+|||..+++++|+++|++ | |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||.. +.|+.|+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~--G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVY--PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHC--TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4589999999999999999999999 9 999999999985 7789999999999999999999 99999 999999999
Q ss_pred ecCCCCCCCC
Q 022058 288 PSKTPVRPRV 297 (303)
Q Consensus 288 ~a~~~~~~r~ 297 (303)
++++....+.
T Consensus 86 ~a~~~~~~~~ 95 (104)
T 2dhg_A 86 VAIPKASRVK 95 (104)
T ss_dssp BCCCCCSCCC
T ss_pred EccCCCcCCC
Confidence 9987655443
No 136
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=125.16 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCcee-EEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCee----
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYP---- 184 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~---- 184 (303)
....++|||+|||+++++++|+++|+.||.|. +|.++.++.+ ++|||||+|.+.++|++|+. |||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999998754 78999999999999999999 9999999999
Q ss_pred EEEeecCCC
Q 022058 185 VRVLPSKTA 193 (303)
Q Consensus 185 i~v~~~~~~ 193 (303)
|+|.|++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998654
No 137
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=1.2e-17 Score=122.22 Aligned_cols=77 Identities=31% Similarity=0.598 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
.++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+|+.+|+..+.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999998644 79999999999999999999999999999999999865
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=122.25 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=74.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--C-CcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--V-HSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~-~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
..++|||+|||..+++++|+++|++| |.|.++.|+.+. + +++|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 34789999999999999999999999 999999999886 3 389999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
++.++.
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 997664
No 139
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=127.11 Aligned_cols=81 Identities=21% Similarity=0.385 Sum_probs=75.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
..+.++|||+|||..+++++|+++|++| |.|..|.|++++ |.++|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456899999999999999999999999 999999999884 6789999999999999999998 9999999999999
Q ss_pred eecCCC
Q 022058 287 SPSKTP 292 (303)
Q Consensus 287 ~~a~~~ 292 (303)
.++++.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999865
No 140
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=126.83 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hC------CcccCC
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LG------GTMLGY 182 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~------g~~~~g 182 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. +| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3446789999999999999999999999999999999998764 79999999999999999998 99 999999
Q ss_pred eeEEEeecCCC
Q 022058 183 YPVRVLPSKTA 193 (303)
Q Consensus 183 ~~i~v~~~~~~ 193 (303)
++|.|.++.+.
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998654
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-17 Score=125.04 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=77.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
....++|||+|||..+++++|+++|++| |.|..|.|+++ +|||||+|.+.++|.+|+. |||..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3456899999999999999999999999 99999999988 4699999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRPG 301 (303)
Q Consensus 289 a~~~~~~r~~r~~ 301 (303)
+++....+..+++
T Consensus 96 a~~~~~~~~~~~s 108 (109)
T 1x4g_A 96 GKESPDMTSGPSS 108 (109)
T ss_dssp CCCCCSSCCCCCC
T ss_pred cCCCCCCCCCCCC
Confidence 9988766655544
No 142
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=1.8e-17 Score=121.35 Aligned_cols=79 Identities=28% Similarity=0.486 Sum_probs=74.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|.++.++.+. +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence 35899999999999999999999999 999999999884 78899999999999999999999999999999999999
Q ss_pred CCC
Q 022058 290 KTP 292 (303)
Q Consensus 290 ~~~ 292 (303)
+++
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 865
No 143
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=122.08 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=73.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..+.|++++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45899999999999999999999999 999999999985 6789999999999999999998 999999999999999
Q ss_pred cC
Q 022058 289 SK 290 (303)
Q Consensus 289 a~ 290 (303)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 144
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.4e-18 Score=120.61 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
+|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|++|+++|+..+.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999999998753 899999999999999999999999999999999874
No 145
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=125.17 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+. .++|||||+|.+.++|.+|++ ||+..+.|+.|.|.++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34467899999999999999999999999999999997653 378999999999999999997 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 146
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=124.17 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=75.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC-CCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD-HVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d-~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+.++|||+|||..+++++|+++|++| |.| .++.+ .++++|||||+|.+.++|.+|+. |||..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA--TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC--SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 356899999999999999999999999 987 55665 47889999999999999999999 999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRPG 301 (303)
Q Consensus 289 a~~~~~~r~~r~~ 301 (303)
++++.+++...++
T Consensus 88 a~~~~~~~~~~~~ 100 (101)
T 2fc9_A 88 QGPRGSPNSGPSS 100 (101)
T ss_dssp CSSCCCCCCCSSC
T ss_pred cCCCCCCCCCCCC
Confidence 9988766655444
No 147
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=122.70 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=73.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45899999999999999999999999 999999999885 7889999999999999999999 9999999999999998
Q ss_pred CC
Q 022058 290 KT 291 (303)
Q Consensus 290 ~~ 291 (303)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=124.38 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=75.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCccee-EEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCee----
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVT-RLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQP---- 283 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~-~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~---- 283 (303)
..++|||+|||..+++++|+++|++| |.|. .|.|++++ +.++|||||+|.+.++|.+|+. |||..+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45899999999999999999999999 9999 99999885 7889999999999999999999 9999999999
Q ss_pred eEEeecCCCCC
Q 022058 284 IRVSPSKTPVR 294 (303)
Q Consensus 284 l~v~~a~~~~~ 294 (303)
|+|.|+++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 149
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=121.71 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC---CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
..++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4688999999999999999999999999999999998753 78999999999999999999 9999999999999998
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 150
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.94 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=73.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||+.+|+++|+++|++| |.|.+|.|++++ |.++|||||+|.+.++|.+|+.+||..+.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 45899999999999999999999999 999999999986 789999999999999999999999999999999999875
Q ss_pred C
Q 022058 291 T 291 (303)
Q Consensus 291 ~ 291 (303)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 151
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=8.5e-18 Score=157.98 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999998654 79999999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 152
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=123.92 Aligned_cols=76 Identities=24% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcc--cCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTM--LGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~--~~g~~i~v~~~ 190 (303)
..+++|||+|||+++|+++|+++|++||.|.++.+++ +||||||+|++.++|.+|+. +++.. +.|++|.|.++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4688999999999999999999999999999999985 36899999999999999998 98875 78999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 654
No 153
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5e-17 Score=124.63 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+++++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345789999999999999999999999999999999998765 79999999999999999999 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 654
No 154
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=126.45 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++.+ ++|||||+|.+.++|++|+. +|+ .+.|++|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4456899999999999999999999999999999999998754 89999999999999999999 888 8999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98654
No 155
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=124.50 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc-CCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcc-cCCeeEEE
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTM-LGYYPVRV 187 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~-~~g~~i~v 187 (303)
+....++|||+|||+++++++|+++|+. ||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ||+.. +.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3446789999999999999999999999 999999999998744 79999999999999999999 99999 99999999
Q ss_pred eecCCC
Q 022058 188 LPSKTA 193 (303)
Q Consensus 188 ~~~~~~ 193 (303)
.++.+.
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998654
No 156
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.8e-17 Score=125.48 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCccc---CCeeE
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTML---GYYPV 185 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~---~g~~i 185 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4456789999999999999999999999999999999998764 79999999999999999998 999887 89999
Q ss_pred EEeecCCCC
Q 022058 186 RVLPSKTAI 194 (303)
Q Consensus 186 ~v~~~~~~~ 194 (303)
.|.++....
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999986543
No 157
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=122.79 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-h--CCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-L--GGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l--~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ + ++..+.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 46789999999999999999999999999999999865 6899999999999999998 6 577899999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
+...
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 7554
No 158
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.7e-17 Score=123.93 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+++++++|+++|+.|| |.+|.++.+..+ ++|||||+|.+.++|.+|+.||+..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 999999998764 799999999999999999999999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 159
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-17 Score=121.53 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=77.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.++ +.++|||||+|.+.++|.+|+. +++.++|+.|.|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 355899999999999999999999999 999999999985 7899999999999999999998 57899999999999
Q ss_pred cCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRP 300 (303)
Q Consensus 289 a~~~~~~r~~r~ 300 (303)
+++......++.
T Consensus 90 a~~~~~~~~~~~ 101 (103)
T 2cqg_A 90 PNSKQSQDSGPS 101 (103)
T ss_dssp CCTTCCCCCSSC
T ss_pred cCCCCcCCCCCC
Confidence 988766554443
No 160
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=2e-17 Score=128.83 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=77.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
....++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 3456899999999999999999999999 999999999874 789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 022058 288 PSKTPVRP 295 (303)
Q Consensus 288 ~a~~~~~~ 295 (303)
++++....
T Consensus 111 ~a~~~~~~ 118 (124)
T 2jwn_A 111 PKRTNMPG 118 (124)
T ss_dssp ESSCCCSS
T ss_pred ECCCCCCC
Confidence 99866443
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-17 Score=129.07 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446789999999999999999999999999999999988654 79999999999999999998 99999999999999
Q ss_pred ecC
Q 022058 189 PSK 191 (303)
Q Consensus 189 ~~~ 191 (303)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 863
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=4.2e-18 Score=160.09 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=106.8
Q ss_pred HHHHHhhcCCceeEEEE----eeCCCCC---ceEE--EEEecCHHHHHHHHH-hCCcccCCeeEEEeec--CCCCCCCCC
Q 022058 132 RLAGLFSSCGQVVDCRV----CGDPHSV---LRFA--FVEFADEHGARAALN-LGGTMLGYYPVRVLPS--KTAILPVNP 199 (303)
Q Consensus 132 ~l~~~F~~~G~i~~~~i----~~~~~~~---~G~~--fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~--~~~~~~~~~ 199 (303)
.|..+|.++|+|..|.. +.+.... .|++ |+.|....++..++. ++......+....... .........
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37889999999988733 2222222 3444 888887666655554 3322221110000000 000000000
Q ss_pred CCCCCc-ccccccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hC
Q 022058 200 TFLPRS-EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CS 275 (303)
Q Consensus 200 ~~~~~~-~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~ 275 (303)
.+.+.. ......+.++|||+|||..+|+++|..+|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||. ||
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 011111 11122345899999999999999999999999 999999999884 7889999999999999999998 99
Q ss_pred CceeCCeeeEEeecCCCC
Q 022058 276 GMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 276 g~~~~g~~l~v~~a~~~~ 293 (303)
|..|.|+.|.|.|+++..
T Consensus 166 g~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 166 GKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCEECCEEEEEEEeCCCC
Confidence 999999999999998654
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=129.22 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=77.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
....++|||+|||..+++++|+++|+.| |.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456899999999999999999999999 999999999885 6789999999999999999998 9999999999999
Q ss_pred eecCCCCCCC
Q 022058 287 SPSKTPVRPR 296 (303)
Q Consensus 287 ~~a~~~~~~r 296 (303)
.++++....+
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765443
No 164
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.5e-17 Score=124.92 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+.+++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3346789999999999999999999999999999999998854 79999999999999999999 999999999999998
Q ss_pred cC
Q 022058 190 SK 191 (303)
Q Consensus 190 ~~ 191 (303)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 165
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=125.44 Aligned_cols=83 Identities=25% Similarity=0.355 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+..|+..+.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 4456899999999999999999999999999999999998654 78999999999999999998899999999999999
Q ss_pred cCCCC
Q 022058 190 SKTAI 194 (303)
Q Consensus 190 ~~~~~ 194 (303)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 86543
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=127.55 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHhhcCCceeEEEEeeCCC-----CCceEEEEEecCHHHHHHHHH-hCCcccCCeeE
Q 022058 115 VRRTVYVSDIDQNITEERLA---GLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAALN-LGGTMLGYYPV 185 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~-----~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i 185 (303)
..++|||+|||+++++++|+ ++|+.||.|.+|.++.+.. .++|||||+|.+.++|++|++ |||..+.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 57889999999999999999 9999999999999998875 257999999999999999999 99999999999
Q ss_pred EEeecCCCC
Q 022058 186 RVLPSKTAI 194 (303)
Q Consensus 186 ~v~~~~~~~ 194 (303)
.|.++.+..
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999987654
No 167
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.6e-17 Score=130.59 Aligned_cols=82 Identities=28% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. |||..|.|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999998764 79999999999999999999 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
++.+.
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 98653
No 168
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=122.82 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=72.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE--------EEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR--------LRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~--------v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
..++|||+|||..+++++|+++|++| |.|.. +.|+.++ |+++|||||+|.+.++|.+|++ |||..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTT--SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45899999999999999999999999 99999 9999884 7899999999999999999998 9999999
Q ss_pred CeeeEEeecC
Q 022058 281 SQPIRVSPSK 290 (303)
Q Consensus 281 g~~l~v~~a~ 290 (303)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 169
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=119.19 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=71.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
+.++|||+|||..+++++|+++|++| |.|..+.++ +|||||+|.+.++|.+|+. |||..+.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 45899999999999999999999999 999999998 4699999999999999998 99999999999999998
Q ss_pred CCCCCCC
Q 022058 291 TPVRPRV 297 (303)
Q Consensus 291 ~~~~~r~ 297 (303)
+....+.
T Consensus 79 ~~~~~~~ 85 (90)
T 2dnq_A 79 NKSKASS 85 (90)
T ss_dssp CCCCCCS
T ss_pred CCCCCCC
Confidence 8765443
No 170
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7e-17 Score=122.82 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=72.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCC-----eeeE
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGS-----QPIR 285 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g-----~~l~ 285 (303)
..++|||+|||..+++++|+++|++| |.|..|.|+.+ |||||+|.+.++|.+||+ |||..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45899999999999999999999999 99999999988 699999999999999999 99999999 9999
Q ss_pred EeecCCCCCCC
Q 022058 286 VSPSKTPVRPR 296 (303)
Q Consensus 286 v~~a~~~~~~r 296 (303)
|.++++..+.+
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765443
No 171
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=3.2e-17 Score=118.36 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
+..|||+||++.+|+++|+++|.+| |+|.++++.. ++|||||+|.+.++|.+|++ |||..+.|+.|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4679999999999999999999999 9999999977 45799999999999999999 99999999999999983
No 172
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=123.06 Aligned_cols=78 Identities=28% Similarity=0.288 Sum_probs=70.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC--CceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS--GMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~--g~~~~g~~l~v~~ 288 (303)
+.++|||+|||+.+++++|+++|++| |.|.+|.|++++ |||||+|.+.++|.+|+. |+ +..+.|+.|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 55899999999999999999999999 999999999874 699999999999999998 75 4789999999999
Q ss_pred cCCCCCC
Q 022058 289 SKTPVRP 295 (303)
Q Consensus 289 a~~~~~~ 295 (303)
+++....
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9865433
No 173
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.5e-17 Score=119.32 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
.+.++|||+|||+.+++++|+++|++| |.|..+.+++++ |+++|||||+|.+.++|.+|+.+++..+.|+.|.|.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF--GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 355899999999999999999999999 999999999885 7899999999999999999999888999999999988
Q ss_pred c
Q 022058 289 S 289 (303)
Q Consensus 289 a 289 (303)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-18 Score=122.79 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|+. |||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999998654 79999999999999999999 9999999999998875
Q ss_pred C
Q 022058 191 K 191 (303)
Q Consensus 191 ~ 191 (303)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=126.63 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG--GTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~--g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|++.++|.+|++ ++ +..+.|++|.|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 35789999999999999999999999999999999876 6899999999999999998 87 46899999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
+...
T Consensus 105 ~~k~ 108 (119)
T 2ad9_A 105 NHKE 108 (119)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7654
No 176
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=4.9e-18 Score=127.46 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=73.7
Q ss_pred ccceEEEcCCCC------CCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCC-
Q 022058 212 CSRTVYCTNIDK------KVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGS- 281 (303)
Q Consensus 212 ~~~~l~V~nL~~------~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g- 281 (303)
..++|||+|||. .+++++|+++|++| |.|.+|.|++++ |+++|||||+|.+.++|.+|+. |||..+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 358999999999 99999999999999 999999999986 7899999999999999999998 99999999
Q ss_pred eeeEEeecCC
Q 022058 282 QPIRVSPSKT 291 (303)
Q Consensus 282 ~~l~v~~a~~ 291 (303)
+.|+|.++.|
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999975
No 177
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=124.62 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=72.3
Q ss_pred ccceEEEcCCCC-CCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCC--ceeCCeeeEEe
Q 022058 212 CSRTVYCTNIDK-KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSG--MVLGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g--~~~~g~~l~v~ 287 (303)
+.++|||+|||+ .+++++|+++|++| |.|.+|.|++++ |||||+|.+.++|..|+. ||+ ..|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 568999999999 99999999999999 999999999876 599999999999999998 875 45999999999
Q ss_pred ecCCCCCCCCCC
Q 022058 288 PSKTPVRPRVTR 299 (303)
Q Consensus 288 ~a~~~~~~r~~r 299 (303)
++++.......+
T Consensus 88 ~a~~~~~~~~~~ 99 (102)
T 1x4d_A 88 LSQKYKRIKSGP 99 (102)
T ss_dssp EECCCTTSSCCS
T ss_pred ECCCCCCCCCCC
Confidence 998765444333
No 178
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=3.3e-17 Score=124.98 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCC-CCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||.. +++++|+++|++| |.|..|.| ++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY--GRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG--SCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 9999999999999 99999999 45799999999999999997 9999999999999999
Q ss_pred CCCCCCCC
Q 022058 290 KTPVRPRV 297 (303)
Q Consensus 290 ~~~~~~r~ 297 (303)
+++...+.
T Consensus 98 ~~~~~~~~ 105 (110)
T 1wf1_A 98 GEPKPDRS 105 (110)
T ss_dssp CCCCSCCC
T ss_pred CCCCCCCC
Confidence 87655443
No 179
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=131.34 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=75.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE--EEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCc----eeC
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR--LRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGM----VLG 280 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~--v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~----~~~ 280 (303)
....++|||+|||+.+++++|+++|++| |.|.. |+|++|+ |+++|||||+|.+. +|.+|+. |||. .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY--AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG--CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 4456899999999999999999999999 99976 9999986 78999999999999 9999998 9999 999
Q ss_pred CeeeEEeecCCCCC
Q 022058 281 SQPIRVSPSKTPVR 294 (303)
Q Consensus 281 g~~l~v~~a~~~~~ 294 (303)
|+.|.|.++++..+
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987643
No 180
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=126.00 Aligned_cols=81 Identities=16% Similarity=0.348 Sum_probs=74.9
Q ss_pred ccceEEEcCCCCCCCHHHHH---HHhhhhcCcceeEEEEecCCC-----CcccEEEEEEcCHHHHHHHHH-hCCceeCCe
Q 022058 212 CSRTVYCTNIDKKVPQAEVK---QFFEAACGGEVTRLRLLGDHV-----HSTRIAFVEFAVAESAILALN-CSGMVLGSQ 282 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~---~~F~~~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~ 282 (303)
..++|||+|||+.+++++|+ ++|++| |.|..|.|+++.+ +++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 45789999999999999999 999999 9999999998863 567999999999999999999 999999999
Q ss_pred eeEEeecCCCCC
Q 022058 283 PIRVSPSKTPVR 294 (303)
Q Consensus 283 ~l~v~~a~~~~~ 294 (303)
.|+|.++++...
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987753
No 181
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=121.07 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCe-eEEE
Q 022058 116 RRTVYVSDIDQNI------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYY-PVRV 187 (303)
Q Consensus 116 ~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~-~i~v 187 (303)
+++|||+|||+.+ ++++|+++|+.||.|.++.++.+.+.++|||||+|.+.++|.+|+. |||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4789999999999 7899999999999999999985444589999999999999999999 999999999 8876
No 182
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=2.6e-17 Score=125.71 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCc-ceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...+|||+|||+.+++++|+++|++| | .|..+.|..+ .++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~--G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN--SLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH--TCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh--CCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34789999999999999999999999 9 8999998643 477899999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 022058 290 KTPVRP 295 (303)
Q Consensus 290 ~~~~~~ 295 (303)
+.+...
T Consensus 103 ~~~p~~ 108 (111)
T 2jvr_A 103 DNPPPI 108 (111)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 766433
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=118.32 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|||..+++++|+++|++| |.|..+.++++ ||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 355899999999999999999999999 99999999855 99999999999999998 9999999999999999
Q ss_pred CCCCCCCC
Q 022058 290 KTPVRPRV 297 (303)
Q Consensus 290 ~~~~~~r~ 297 (303)
++....+.
T Consensus 79 ~~~~~~~~ 86 (90)
T 2dnp_A 79 TKGQKKSG 86 (90)
T ss_dssp CCCCCCCS
T ss_pred CCCCCCCC
Confidence 88754433
No 184
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=124.49 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=76.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
...++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+.+|+..|.|+.|.|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 355899999999999999999999999 999999999984 7889999999999999999998899999999999999
Q ss_pred cCCCCCC
Q 022058 289 SKTPVRP 295 (303)
Q Consensus 289 a~~~~~~ 295 (303)
+++....
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 185
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=121.47 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=70.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCce--eCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMV--LGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~--~~g~~l~v 286 (303)
..+.++|||+|||+.+++++|+++|++| |.|.++.+++++ |+|||+|.+.++|.+|+. |||.. +.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 4467899999999999999999999999 999999998754 699999999999999998 98875 78999999
Q ss_pred eecCCC
Q 022058 287 SPSKTP 292 (303)
Q Consensus 287 ~~a~~~ 292 (303)
.|+++.
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999854
No 186
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=133.49 Aligned_cols=78 Identities=27% Similarity=0.345 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--ceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
..++|||+|||+++++++|+++|+.|| .|.+|.++.|+.+ ++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999998754 79999999999999999999 999999999999999
Q ss_pred cCC
Q 022058 190 SKT 192 (303)
Q Consensus 190 ~~~ 192 (303)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 753
No 187
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=6.6e-17 Score=125.97 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
...++|||+|||+.+++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. |||..+.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45788999999999999999999999999999999998744 79999999999999999999 99999999999999987
Q ss_pred CCC
Q 022058 192 TAI 194 (303)
Q Consensus 192 ~~~ 194 (303)
...
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 188
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=125.33 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCcee--------EEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCccc
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV--------DCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTML 180 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~ 180 (303)
.....++|||+|||+++++++|+++|+.||.|. .|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445688999999999999999999999999999 6999988654 79999999999999999998 999999
Q ss_pred CCeeEEEeecCCC
Q 022058 181 GYYPVRVLPSKTA 193 (303)
Q Consensus 181 ~g~~i~v~~~~~~ 193 (303)
.|+.|.|.+++..
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999998654
No 189
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-17 Score=121.62 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 4446788999999999999999999999999999999998754 79999999999999999999 56789999999999
Q ss_pred cCCCC
Q 022058 190 SKTAI 194 (303)
Q Consensus 190 ~~~~~ 194 (303)
+....
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 86543
No 190
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=124.39 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4688999999999999999999999999999999998654 79999999999999999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 191
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=124.99 Aligned_cols=80 Identities=23% Similarity=0.206 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
+...++|||+|||+++|+++|+++|+.||.+ +|.|+.++.+ ++|||||+|.+.++|++||++|+..|.||.|.|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 3467899999999999999999999999954 9999998754 7999999999999999999999999999999999876
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 192
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.5e-17 Score=125.75 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=73.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
....++|||+|||..+++++|+++|++| |.|.+|.|++++ ++++|||||+|.+.++|.+|+. |||..++|+.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF--GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS--CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456899999999999999999999999 999999999884 6889999999999999999998 9999999999999
Q ss_pred eecC
Q 022058 287 SPSK 290 (303)
Q Consensus 287 ~~a~ 290 (303)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 193
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=119.61 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
+...++|||+|||+++++++|+++|+.| .|.+|.++.+..+ ++|||||+|.+.++|.+|+.+|+..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4467899999999999999999999999 9999999998544 7999999999999999999999999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 194
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=124.65 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCC--cccCCeeEEEee
Q 022058 114 SVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG--TMLGYYPVRVLP 189 (303)
Q Consensus 114 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g--~~~~g~~i~v~~ 189 (303)
...++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|++ ||+ ..+.|++|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3678999999999 9999999999999999999999875 4799999999999999998 885 459999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
++..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8753
No 195
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=129.24 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999998765 79999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 022058 189 PSKTAI 194 (303)
Q Consensus 189 ~~~~~~ 194 (303)
+++...
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987553
No 196
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=124.32 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=75.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||+.+++++|+++|++| | +..|.|+.|+ ++++|||||+|.+.++|.+|+.+|+..|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~--G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPL--N-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSC--C-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--C-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45899999999999999999999999 9 5599999885 789999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 022058 291 TPVRPRV 297 (303)
Q Consensus 291 ~~~~~r~ 297 (303)
++...+-
T Consensus 91 ~~~~~~~ 97 (102)
T 1wez_A 91 TAGTSGS 97 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 7765543
No 197
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=117.72 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=71.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+|+. |||..+.|+.|+|.+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999999999999999 99999999855 99999999999999998 99999999999999998
Q ss_pred CCCCCCC
Q 022058 291 TPVRPRV 297 (303)
Q Consensus 291 ~~~~~r~ 297 (303)
+....+.
T Consensus 81 ~~~~~~~ 87 (92)
T 2dgt_A 81 SRLRTAS 87 (92)
T ss_dssp CCCSCCC
T ss_pred CCCCCCC
Confidence 7755443
No 198
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.9e-17 Score=126.47 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCC-ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
+...++|||+|||+++++++|+++|+.|| .|..+.++.+ .++|||||+|.+.++|++||+ |||..+.|+.|.|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44578899999999999999999999999 8999988643 368999999999999999998 9999999999999998
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 199
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=4.5e-17 Score=124.16 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+..++..+.|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 4456889999999999999999999999999999999998754 89999999999999999999446999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
+.+.
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8643
No 200
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=118.62 Aligned_cols=73 Identities=25% Similarity=0.407 Sum_probs=68.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
++|||+|||+++++++|+++|+.||+|.++.++.++.+ ++|||||+|.+.++|.+|+. ++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998754 79999999999999999999 88 9999999999985
No 201
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=125.31 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCe-eE
Q 022058 114 SVRRTVYVSDIDQNI------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYY-PV 185 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~-~i 185 (303)
...++|||+|||+.+ ++++|+++|+.||.|.+|.++...+.++|||||+|.+.++|.+|+. |||..+.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 357899999999999 7899999999999999999985444489999999999999999999 999999998 99
Q ss_pred EEeecCC
Q 022058 186 RVLPSKT 192 (303)
Q Consensus 186 ~v~~~~~ 192 (303)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999853
No 202
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=119.12 Aligned_cols=80 Identities=28% Similarity=0.279 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-h--CCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-C--SGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l--~g~~~~g~~l~v~ 287 (303)
.+.++|||+|||..+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|+. | ++..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 456899999999999999999999999 99999999987 4699999999999999997 6 5788999999999
Q ss_pred ecCCCCCCC
Q 022058 288 PSKTPVRPR 296 (303)
Q Consensus 288 ~a~~~~~~r 296 (303)
|+++..-.+
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 998765554
No 203
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=6.4e-17 Score=122.60 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=73.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+.++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356899999999999999999999999 999999999885 7889999999999999999999 999999999999999
Q ss_pred cC
Q 022058 289 SK 290 (303)
Q Consensus 289 a~ 290 (303)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 204
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2.6e-17 Score=127.34 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCc---eeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEe
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQ---VVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVL 188 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~ 188 (303)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+..+ ++|||||+|.+.++|++||++|+..|.|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 446789999999999999999999999999 899999998766 7999999999999999999999999999999999
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8743
No 205
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=4.3e-17 Score=128.07 Aligned_cols=80 Identities=23% Similarity=0.266 Sum_probs=75.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
.+.++|||+|||..+++++|+++|++| |.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..|.|+.|.|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTT--SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456899999999999999999999999 999999999985 6889999999999999999998 99999999999999
Q ss_pred ecCCC
Q 022058 288 PSKTP 292 (303)
Q Consensus 288 ~a~~~ 292 (303)
|+++.
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 99864
No 206
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=123.38 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+ ++|||||+|.+.++|++|+. ||+..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35688999999999999999999999999998888877654 78999999999999999997 9999999999999997
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 207
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=123.38 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=73.4
Q ss_pred ccceEEEcCCCCCC------CHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCe-e
Q 022058 212 CSRTVYCTNIDKKV------PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQ-P 283 (303)
Q Consensus 212 ~~~~l~V~nL~~~~------t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~-~ 283 (303)
..++|||+|||..+ ++++|+++|++| |.|..|.|++..|+++|||||+|.+.++|.+|+. |||..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 45899999999999 789999999999 9999999997678999999999999999999999 999999998 9
Q ss_pred eEEeecCCC
Q 022058 284 IRVSPSKTP 292 (303)
Q Consensus 284 l~v~~a~~~ 292 (303)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999744
No 208
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=122.13 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTP 292 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 292 (303)
++|||+|||..+++++|+++|++| |.|..|.++++ ++|||||+|.+.++|.+|+. |||..+.|+.|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 479999999999999999999999 99999999988 67899999999999999998 9999999999999999877
Q ss_pred CCC
Q 022058 293 VRP 295 (303)
Q Consensus 293 ~~~ 295 (303)
.+.
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 209
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-17 Score=117.79 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+...++|||+|||+++++++|+++|+.||.|.+|.++ +|||||+|.+.++|.+|+. ||+..+.|++|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 4467899999999999999999999999999999997 5899999999999999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
+.
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 210
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=124.67 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=75.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
..++|||+|||..+++++|+++|++| |.|..+.++++. |.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 45899999999999999999999999 999999999884 7889999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 022058 289 SKTPVR 294 (303)
Q Consensus 289 a~~~~~ 294 (303)
+++...
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987643
No 211
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=122.33 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC---CCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.|| |.+|.|+.++. .++|||||+|.+.++|.+||.||+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3578999999999999999999999999 99999999875 2799999999999999999999999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 212
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=126.71 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCce-eEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
+...++|||+|||+++++++|+++|+.||.| .+|.|+.+..+ ++|||||+|.+.++|.+||.+|+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3467899999999999999999999999999 89999998854 899999999999999999999999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 213
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.4e-17 Score=122.10 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=74.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcc-eeEEEEe-cCC--CCcccEEEEEEcCHHHHHHHHH-hC--CceeCCeee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGE-VTRLRLL-GDH--VHSTRIAFVEFAVAESAILALN-CS--GMVLGSQPI 284 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~-i~~v~i~-~d~--~~~~g~afV~f~~~e~A~~Ai~-l~--g~~~~g~~l 284 (303)
+.++|||+|||..+++++|+++|++| |. |.++.++ .+. +.++|||||+|.+.++|.+|+. || +..+.|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV--TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH--STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh--cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45899999999999999999999999 98 9999998 564 5789999999999999999999 96 589999999
Q ss_pred EEeecCCCCCC
Q 022058 285 RVSPSKTPVRP 295 (303)
Q Consensus 285 ~v~~a~~~~~~ 295 (303)
+|.|+++...+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876553
No 214
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=121.55 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCC--cccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG--TMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g--~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ |++ ..+.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35789999999999999999999999999999999864 6899999999999999998 765 4589999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
....
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 7543
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=123.14 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeE-EEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD-CRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+++++++|+++|+.||.|.+ |.|+.+..+ ++|||||+|.+.++|.+||..|+..++||.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 346789999999999999999999999999987 888888544 799999999999999999988999999999999987
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 543
No 216
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=1e-16 Score=122.14 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=72.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
....++|||+|||..+++++|+++|++| |.|..|.|+++. |.++|||||+|.+.++|.+|+...|..++|+.|.|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 3456899999999999999999999999 999999999985 789999999999999999999944699999999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
++.+..
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998543
No 217
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.3e-17 Score=116.80 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 215 ~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
+|||+|||..+++++|+++|++| |.|..+.+++++ +.++|||||+|.+.++|.+|+.|||..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 48999999999999999999999 999999999885 78999999999999999999999999999999999986
No 218
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=2e-17 Score=122.61 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+ ++|||||+|.+.++|.+|++ ||+..+.|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999999998888887654 78999999999999999998 99999999999999864
No 219
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.7e-16 Score=119.46 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=73.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|+++ ||||+|.+.++|.+|+. |||..|.|+.|+|.+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEECSS------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC------EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 45899999999999999999999999 99999999843 99999999999999999 99999999999999998
Q ss_pred CCCCCCCCCC
Q 022058 291 TPVRPRVTRP 300 (303)
Q Consensus 291 ~~~~~r~~r~ 300 (303)
++...+..|.
T Consensus 82 ~~~~~~~~~~ 91 (103)
T 2dgu_A 82 PPDQKRKERK 91 (103)
T ss_dssp CCCCCCCCCC
T ss_pred CCcccchhhh
Confidence 8776654443
No 220
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=1.1e-16 Score=129.64 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=77.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356899999999999999999999999 999999999985 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 022058 288 PSKTPVRPR 296 (303)
Q Consensus 288 ~a~~~~~~r 296 (303)
|+++....+
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998765444
No 221
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=7.2e-17 Score=122.81 Aligned_cols=77 Identities=30% Similarity=0.523 Sum_probs=71.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
....++|||+|||..+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+. |||..+.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999 999999998 5799999999999999998 999999999999999
Q ss_pred cCCCCC
Q 022058 289 SKTPVR 294 (303)
Q Consensus 289 a~~~~~ 294 (303)
++++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987643
No 222
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.2e-17 Score=122.14 Aligned_cols=81 Identities=21% Similarity=0.191 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCc-eeEEEEe-eCCCC--CceEEEEEecCHHHHHHHHH-hC--CcccCCeeEE
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVC-GDPHS--VLRFAFVEFADEHGARAALN-LG--GTMLGYYPVR 186 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~-~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~--g~~~~g~~i~ 186 (303)
...++|||+|||+++++++|+++|+.||. |.++.++ .+..+ ++|||||+|.+.++|.+|+. || +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 66653 79999999999999999999 96 5899999999
Q ss_pred EeecCCCC
Q 022058 187 VLPSKTAI 194 (303)
Q Consensus 187 v~~~~~~~ 194 (303)
|.|+.+..
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99987654
No 223
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.7e-17 Score=130.19 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCc---eeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEE
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQ---VVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v 187 (303)
.....++|||+|||+++|+++|+++|+.||. |.+|.|++++.+ ++|||||+|.+.++|++||++|+..+.||.|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 3446789999999999999999999999999 899999998766 899999999999999999999999999999999
Q ss_pred eecC
Q 022058 188 LPSK 191 (303)
Q Consensus 188 ~~~~ 191 (303)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9874
No 224
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=131.49 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=72.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCc--ceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGG--EVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G--~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
..++|||+|||..+++++|+++|++| | .|..|.|+.|. |+++|||||+|.+.++|.+|+. |||..|+|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI--GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT--TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH--CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 45799999999999999999999999 9 99999999884 7899999999999999999999 9999999999999
Q ss_pred eecCC
Q 022058 287 SPSKT 291 (303)
Q Consensus 287 ~~a~~ 291 (303)
.++.+
T Consensus 132 ~~a~~ 136 (156)
T 3n9u_C 132 RPATR 136 (156)
T ss_dssp EECCH
T ss_pred EEcCC
Confidence 99975
No 225
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=123.40 Aligned_cols=81 Identities=17% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCccc--------C
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTML--------G 181 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~--------~ 181 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. |||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3446789999999999999999999999999999999998744 79999999999999999999 999999 5
Q ss_pred CeeEEEeecCC
Q 022058 182 YYPVRVLPSKT 192 (303)
Q Consensus 182 g~~i~v~~~~~ 192 (303)
+++|.|.++++
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899998763
No 226
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=121.96 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=73.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
..++|||+|||..+++++|+++|++| |.|..+.++.+. ++++|||||+|.+.++|.+|+. |||..|.|+.|+|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTS--CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45889999999999999999999999 999887777663 6789999999999999999997 999999999999999
Q ss_pred cCCCC
Q 022058 289 SKTPV 293 (303)
Q Consensus 289 a~~~~ 293 (303)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 97653
No 227
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=123.65 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+||..++..+.|+.|.|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 4688999999999999999999999999999999998764 79999999999999999998899999999999999865
Q ss_pred C
Q 022058 193 A 193 (303)
Q Consensus 193 ~ 193 (303)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 228
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=120.40 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=70.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 344578999999999999999999999999997 777764 468999999999999999998 9999999999999998
Q ss_pred CC
Q 022058 191 KT 192 (303)
Q Consensus 191 ~~ 192 (303)
++
T Consensus 92 ~~ 93 (97)
T 2e5j_A 92 RQ 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 229
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=124.63 Aligned_cols=78 Identities=31% Similarity=0.444 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+.||+..|.|+.|.|.++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 4678999999999999999999999999999999998864 79999999999999999999999999999999999753
No 230
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=124.16 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCC-C-C-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-H-S-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~-~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.|| |.+|.++.+. . + ++|||||+|.+.++|.+|+.|||..+.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 344688999999999999999999999999 9999999986 2 2 8999999999999999999999999999999999
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
+++.
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9854
No 231
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=8.9e-18 Score=123.33 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=69.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.+ |.+|+. |||..+.|++|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999998754 7999999999999 999999 9999999999999998654
No 232
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-17 Score=122.14 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+.+++++|+++|+.||.|.+|.++.+ +|||||+|.+.++|.+|+. |||..+.|++|.|.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 4456889999999999999999999999999999999876 6899999999999999998 9999999999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
+...
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 233
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=8e-17 Score=125.41 Aligned_cols=79 Identities=32% Similarity=0.554 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+.|||..+.|+.|.|.+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999998643 79999999999999999999999999999999999865
Q ss_pred C
Q 022058 193 A 193 (303)
Q Consensus 193 ~ 193 (303)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 234
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-17 Score=119.88 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC--CeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG--YYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~--g~~i~v~~ 189 (303)
....++|||+|||+++++++|+++|+.||.|.+|.++.+ +|||||+|.+.++|.+|++ ||+..+. |++|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 345789999999999999999999999999999999764 6899999999999999999 9999999 99999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
+++.
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 235
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=8.5e-17 Score=130.42 Aligned_cols=82 Identities=26% Similarity=0.276 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3346789999999999999999999999999999999998765 78999999999999999999 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
|+.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 98654
No 236
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.2e-17 Score=116.77 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-h-CCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-L-GGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l-~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|+. | |+..+.|++|.|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 346789999999999999999999999999999999874 6899999999999999999 8 999999999999986
Q ss_pred C
Q 022058 191 K 191 (303)
Q Consensus 191 ~ 191 (303)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 237
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=123.76 Aligned_cols=85 Identities=27% Similarity=0.289 Sum_probs=74.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC--CceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS--GMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~--g~~~~g~~l~v 286 (303)
..+.++|||+|||+.+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|+. |+ +..+.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3456899999999999999999999999 99999999987 4699999999999999998 86 46899999999
Q ss_pred eecCCCCCCCCCCC
Q 022058 287 SPSKTPVRPRVTRP 300 (303)
Q Consensus 287 ~~a~~~~~~r~~r~ 300 (303)
.|+++..-.+...+
T Consensus 102 ~~a~~k~~~~~~~~ 115 (119)
T 2ad9_A 102 QFSNHKELKTDSSP 115 (119)
T ss_dssp EECSSSSCCCCCCT
T ss_pred EEccCCCCCccccc
Confidence 99987665554433
No 238
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.7e-17 Score=120.83 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|++ ||+..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 3446789999999999999999999999999999999864 6899999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 239
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=123.28 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
..+|||+|||+++++++|+++|+.| .|.+|.|+.++.+ ++|||||+|.+.++|++||.+|+..|+||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999 8999999998766 8999999999999999999999999999999998864
No 240
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=125.94 Aligned_cols=81 Identities=19% Similarity=0.112 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcce-eEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV-TRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i-~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
...++|||+|||..+++++|+++|++| |.| ..|.|+.|. |+++|||||+|.+.++|.+|+.+||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI--PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS--CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC--CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 345899999999999999999999999 999 889999986 7899999999999999999998999999999999999
Q ss_pred cCCCC
Q 022058 289 SKTPV 293 (303)
Q Consensus 289 a~~~~ 293 (303)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87554
No 241
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=124.23 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=77.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. |.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 356899999999999999999999999 999999999986 7789999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 022058 289 SKTPVRPR 296 (303)
Q Consensus 289 a~~~~~~r 296 (303)
+.+...+.
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 98765544
No 242
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=121.48 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcce----eEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV----TRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i----~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
.+.++|||+|||..+++++|+++|++| |.| ..+.+. .+.++|||||+|.+.++|.+|+. |||..+.|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH--HHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 356899999999999999999999999 999 455554 56788999999999999999998 999999999999
Q ss_pred EeecCCCCCCC
Q 022058 286 VSPSKTPVRPR 296 (303)
Q Consensus 286 v~~a~~~~~~r 296 (303)
|.|+++....+
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99998765433
No 243
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=6.2e-17 Score=126.39 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|.+|++ ||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 35788999999999999999999999999999999998654 79999999999999999998 9999999999999998
Q ss_pred CCCC
Q 022058 191 KTAI 194 (303)
Q Consensus 191 ~~~~ 194 (303)
....
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 6543
No 244
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=120.68 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCC-----eeEEE
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGY-----YPVRV 187 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g-----~~i~v 187 (303)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+ ||+..+.| +.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 35789999999999999999999999999999999887 799999999999999999 99999999 99999
Q ss_pred eecCCCC
Q 022058 188 LPSKTAI 194 (303)
Q Consensus 188 ~~~~~~~ 194 (303)
.++.+..
T Consensus 88 ~~a~~~~ 94 (108)
T 1x4c_A 88 KVDGPRS 94 (108)
T ss_dssp EESSCCS
T ss_pred EeCCCCC
Confidence 9987643
No 245
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.1e-17 Score=121.46 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
+...++|||+|||+++++++|+++|+.||.|.++.+. .++|||||+|.+.++|.+|+. |||..+.|+.|.|.|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3457899999999999999999999999999999997 357899999999999999998 99999999999999985
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 246
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=118.30 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=67.3
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCe-eeE
Q 022058 214 RTVYCTNIDKKV------PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQ-PIR 285 (303)
Q Consensus 214 ~~l~V~nL~~~~------t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~-~l~ 285 (303)
++|||+|||..+ ++++|+++|++| |.|.++.++++.|+++|||||+|.+.++|.+|+. |||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999 9999999987678999999999999999999998 999999999 887
Q ss_pred Ee
Q 022058 286 VS 287 (303)
Q Consensus 286 v~ 287 (303)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 247
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=9e-17 Score=122.27 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=70.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 111 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
......++|||+|||+++++++|+++|+.||.|.+|.++ +|||||+|.+.++|.+|+. |||..+.|+.|.|.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344578999999999999999999999999999999998 6899999999999999998 999999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
++..
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8653
No 248
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=8.6e-17 Score=119.45 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=71.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
.+.++|||+|||..+++++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999 988777 4457889999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 022058 290 KTPVR 294 (303)
Q Consensus 290 ~~~~~ 294 (303)
++..+
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 86643
No 249
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.6e-17 Score=117.67 Aligned_cols=73 Identities=16% Similarity=0.331 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeec
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~ 190 (303)
+|||+|||+++++++|+++|+.||+|.++.++.++.+ ++|||||+|.+.++|.+|+.+++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999988764 799999999999999999998999999999999874
No 250
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.8e-17 Score=121.66 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
++|||+|||..+++++|+++|++| |.|.++.++++. |.++|||||+|.+.+ |.+|+. |||..++|+.|+|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 589999999999999999999999 999999999985 788999999999999 999998 99999999999999998
Q ss_pred CCCCCC
Q 022058 291 TPVRPR 296 (303)
Q Consensus 291 ~~~~~r 296 (303)
+...+.
T Consensus 79 ~~~~~~ 84 (90)
T 2ki2_A 79 PKKSLE 84 (90)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 765443
No 251
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=122.62 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC---CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH---VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
...++|||+|||..+++++|+++|++| | |.+|.|+++. |+++|||||+|.+.++|.+|+.|||..++|+.|+|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS--C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 356899999999999999999999999 9 9999999874 678999999999999999999999999999999999
Q ss_pred ecCCC
Q 022058 288 PSKTP 292 (303)
Q Consensus 288 ~a~~~ 292 (303)
++++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99865
No 252
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=125.80 Aligned_cols=80 Identities=33% Similarity=0.562 Sum_probs=75.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 45899999999999999999999999 999999999886 68899999999999999999999999999999999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
++..
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7543
No 253
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.6e-16 Score=118.43 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+. +||..+.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445689999999998 99999999999999999999983 6899999999999999999 999999999999999
Q ss_pred cCC
Q 022058 190 SKT 192 (303)
Q Consensus 190 ~~~ 192 (303)
++.
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 254
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9e-17 Score=118.67 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcc-eeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCC-ceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGE-VTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSG-MVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~-i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g-~~~~g~~l~v~~ 288 (303)
..++|||+|||..+++++|+++|++| |. |..+.+. ++|||||+|.+.++|.+|+. ||| ..+.|+.|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDR--KLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHT--TCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc--CCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 45899999999999999999999999 99 6666663 45799999999999999998 999 999999999999
Q ss_pred cCCCCCCC
Q 022058 289 SKTPVRPR 296 (303)
Q Consensus 289 a~~~~~~r 296 (303)
+++.....
T Consensus 80 a~~~~~~~ 87 (93)
T 2cqh_A 80 SVSKKLRS 87 (93)
T ss_dssp CCCCCCCC
T ss_pred ccCccccC
Confidence 98765443
No 255
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=6.4e-17 Score=126.54 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=71.7
Q ss_pred ccceEEEcCCCCCCCHHHHH----HHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 212 CSRTVYCTNIDKKVPQAEVK----QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~----~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
+.++|||+|||+.+++++|+ ++|++| |.|.+|.+.. .++++|||||+|.+.++|..|+. |||..|.|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46899999999999999876 799999 9999998865 36789999999999999999998 9999999999999
Q ss_pred eecCCCC
Q 022058 287 SPSKTPV 293 (303)
Q Consensus 287 ~~a~~~~ 293 (303)
.|+++..
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998654
No 256
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=4.4e-17 Score=120.77 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..+.++.++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS--CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45899999999999999999999999 999988877764 6789999999999999999998 999999999999999
Q ss_pred cCC
Q 022058 289 SKT 291 (303)
Q Consensus 289 a~~ 291 (303)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 863
No 257
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=118.57 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=72.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
..+.++|||+|||..+++++|+++|+.| + .+.++.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS--V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC--S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC--e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456899999999999999999999987 5 45566653 7889999999999999999998 9999999999999
Q ss_pred eecCCCCCCCCC
Q 022058 287 SPSKTPVRPRVT 298 (303)
Q Consensus 287 ~~a~~~~~~r~~ 298 (303)
.++++.......
T Consensus 87 ~~a~~~~~~~~~ 98 (102)
T 2fc8_A 87 DWAKPKGEGGSG 98 (102)
T ss_dssp EECCCCCSSSCS
T ss_pred EEecCCCCCCCC
Confidence 999987654443
No 258
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.7e-17 Score=119.87 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=70.6
Q ss_pred cccceEEEcCCCC-CCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 211 MCSRTVYCTNIDK-KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 211 ~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.+.++|||+|||. .+++++|+++|++| |.|..+.|. +|||||+|.+.++|.+|+. |||..+.|+.|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3568999999998 99999999999999 999999995 5699999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCC
Q 022058 289 SKTPVRPRVTRP 300 (303)
Q Consensus 289 a~~~~~~r~~r~ 300 (303)
+++..+++..+.
T Consensus 80 a~~~~~~~~~~~ 91 (96)
T 2kvi_A 80 SSSNARPQFDHG 91 (96)
T ss_dssp EECCCC------
T ss_pred cCcCCCCCCCCC
Confidence 988776665543
No 259
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=125.70 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 114 SVRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
...++|||+|||+.+++++|+ ++|+.||.|.+|.+..+ ..++|||||+|.+.++|.+|+. |||..+.|++|.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 357899999999999999876 69999999999988642 3479999999999999999998 99999999999999
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
|++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9864
No 260
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-17 Score=119.68 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=71.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
+.++|||+|||..+++++|+++|++| |.|..+.|+.++ +.++|||||+|.+.++|.+|+. |||..+.|+.|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45899999999999999999999999 999999999984 7889999999999999999999 999999999998877
Q ss_pred cC
Q 022058 289 SK 290 (303)
Q Consensus 289 a~ 290 (303)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 261
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.1e-16 Score=131.17 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|.+||. |||..|.|++|.|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4667999999999999999999999999999999998654 78999999999999999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 151 ~~ 152 (165)
T 1rk8_A 151 VK 152 (165)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 262
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=127.24 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.||.|.++.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|++|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3346889999999999999999999999999999999998654 79999999999999999998 99999999999998
Q ss_pred ec
Q 022058 189 PS 190 (303)
Q Consensus 189 ~~ 190 (303)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 74
No 263
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=124.76 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCc---eeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEE
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQ---VVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v 187 (303)
.....++|||+|||+++|+++|+++|+.||. |.+|.|+.+..+ ++|||||+|.+.++|.+||.+|+..++|+.|.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 3446789999999999999999999999998 899999988765 899999999999999999999999999999999
Q ss_pred eecCC
Q 022058 188 LPSKT 192 (303)
Q Consensus 188 ~~~~~ 192 (303)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98753
No 264
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=120.95 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=74.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCcee--------C
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVL--------G 280 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~--------~ 280 (303)
...++|||+|||..+++++|+++|++| |.|..+.|+++. +.++|||||+|.+.++|.+|+. |||..+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 356899999999999999999999999 999999999985 7789999999999999999998 999999 6
Q ss_pred CeeeEEeecCCCC
Q 022058 281 SQPIRVSPSKTPV 293 (303)
Q Consensus 281 g~~l~v~~a~~~~ 293 (303)
++.|.|.|++|+.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999998653
No 265
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4e-16 Score=116.13 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC--CeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG--SQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~--g~~l~v~ 287 (303)
.+.++|||+|||..+++++|+++|++| |.|.+|.+.++ +|||||+|.+.++|.+|+. |||..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345899999999999999999999999 99999999876 4699999999999999998 9999999 9999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
|+++..
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998753
No 266
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=123.06 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++. ++|||||+|.+.++|.+|+. |||..+.|++|.|.|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 467899999999999999999999999999999874 56899999999999999998 9999999999999998654
Q ss_pred C
Q 022058 194 I 194 (303)
Q Consensus 194 ~ 194 (303)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 267
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.9e-17 Score=131.51 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=74.6
Q ss_pred eEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCCHHHHHHHhh
Q 022058 157 RFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235 (303)
Q Consensus 157 G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~ 235 (303)
|+||.+|..++.+-.++. +... .+|...--... ...........++|||+|||+++|+++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 678888887777766665 3321 22222210100 001111223458999999999999999999999
Q ss_pred hhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCCCCCCCC
Q 022058 236 AACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPVRPRV 297 (303)
Q Consensus 236 ~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~~~~~r~ 297 (303)
+| | |..|.|+.|+ ++++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++.++...+.
T Consensus 69 ~~--G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~~~ 128 (139)
T 2hgn_A 69 PL--N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 128 (139)
T ss_dssp SC--C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC---
T ss_pred hc--C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCCCC
Confidence 99 9 7799999885 7899999999999999999999999999999999999987765443
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=118.72 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.....++|||+|||+++++++|+++|+.||.| .++.+..+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34468999999999999999999999999987 45555333 79999999999999999999 999999999999999
Q ss_pred cCCCC
Q 022058 190 SKTAI 194 (303)
Q Consensus 190 ~~~~~ 194 (303)
+++..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 87653
No 269
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=128.69 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeE--EEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCc----ccCCe
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD--CRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGT----MLGYY 183 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~----~~~g~ 183 (303)
....++|||+|||+++++++|+++|+.||.|.. |+|++|+.+ ++|||||+|.+. +|.+|+. |||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999977 999998854 899999999999 9999998 9999 99999
Q ss_pred eEEEeecCCC
Q 022058 184 PVRVLPSKTA 193 (303)
Q Consensus 184 ~i~v~~~~~~ 193 (303)
.|.|.++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998654
No 270
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=115.88 Aligned_cols=76 Identities=26% Similarity=0.459 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.+...++|||+|||+++++++|+++|+.||.|.+|.+++ |||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 344678999999999999999999999999999999973 599999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=117.03 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
.+.++|||+|||..+++++|+++|++| |.|..|.+.+++ |||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 355899999999999999999999999 999999998764 699999999999999998 9999999999999999
Q ss_pred CCCCC
Q 022058 290 KTPVR 294 (303)
Q Consensus 290 ~~~~~ 294 (303)
++...
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87643
No 272
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=114.85 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.+++ +||||+|.+.++|.+|+. ||+..+.|+.|.|.++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 344678999999999999999999999999999999973 599999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 273
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=4e-16 Score=116.28 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=70.1
Q ss_pred ccccceEEEcCCCC-CCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEe
Q 022058 210 EMCSRTVYCTNIDK-KVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVS 287 (303)
Q Consensus 210 ~~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~ 287 (303)
..+.++|||+|||. .+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999998 99999999999999 999999994 5799999999999999999 99999999999999
Q ss_pred ecCCCC
Q 022058 288 PSKTPV 293 (303)
Q Consensus 288 ~a~~~~ 293 (303)
++++..
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998653
No 274
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.5e-17 Score=123.00 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEe
Q 022058 113 DSVRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG--GTMLGYYPVRVL 188 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~--g~~~~g~~i~v~ 188 (303)
....++|||+|||++ +++++|+++|+.||.|.+|.|++ ++|||||+|.+.++|.+|++ || +..+.|++|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 446889999999998 99999999999999999999974 36899999999999999998 75 466999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
+++..
T Consensus 98 ~a~~~ 102 (112)
T 1x4f_A 98 LSEKY 102 (112)
T ss_dssp EECSC
T ss_pred ECccc
Confidence 98654
No 275
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=118.48 Aligned_cols=80 Identities=28% Similarity=0.228 Sum_probs=73.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE-EEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR-LRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~-v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
...+|||+|||+.+++++|+++|++| |.|.. |.|+.+. |+++|||||+|.+.++|.+|+.+|+..++|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45899999999999999999999999 99987 8888874 78999999999999999999988999999999999998
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
.+..
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7554
No 276
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=5.9e-17 Score=121.55 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=71.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|.. .++.+. +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL--FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH--HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 45899999999999999999999999 99988 555553 78899999999999999999999999999999999999
Q ss_pred CCC
Q 022058 290 KTP 292 (303)
Q Consensus 290 ~~~ 292 (303)
++.
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 854
No 277
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=119.19 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCC--ceeCCeeeEEe
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSG--MVLGSQPIRVS 287 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g--~~~~g~~l~v~ 287 (303)
.+.++|||+|||..+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|+. |++ ..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 356899999999999999999999999 99999999876 4699999999999999998 865 45999999999
Q ss_pred ecCCCCC
Q 022058 288 PSKTPVR 294 (303)
Q Consensus 288 ~a~~~~~ 294 (303)
|+++...
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9986543
No 278
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=115.03 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=73.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| .|..|.|+++. |+++|||||+|.+.++|.+|+.|||..++|+.|.|.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 45899999999999999999999997 68999999884 789999999999999999999999999999999999998
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
+..
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 279
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=6.7e-17 Score=114.38 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 215 ~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
+|||+|||..+++++|+++|++| |.|.++.+++++ +.++|||||+|.+.++|.+|+.+++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 58999999999999999999999 999999999885 68899999999999999999998999999999999875
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=2e-16 Score=122.28 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=73.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcc---eeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGE---VTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~---i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
..++|||+|||+.+++++|+++|++| |. |..|.|+.+. |+++|||||+|.+.++|.+|+.|||..|+|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDC--TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTS--CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc--CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45889999999999999999999998 98 8999999885 789999999999999999999999999999999999
Q ss_pred ecCC
Q 022058 288 PSKT 291 (303)
Q Consensus 288 ~a~~ 291 (303)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 281
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=116.41 Aligned_cols=77 Identities=25% Similarity=0.415 Sum_probs=69.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| |.|. +.++.+ .++|||||+|.+.++|.+|+. |||..+.|+.|+|.+++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALREL--GSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHT--TCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhc--CCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999 9997 666654 567899999999999999998 99999999999999998
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 282
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.6e-17 Score=126.06 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
...++|||+|||+++++++|+++|+.||.|.++.++.+..+ ++|||||+|.+.++|.+||.+|+..|.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 35789999999999999999999999999988655554433 7999999999999999999999999999999999974
Q ss_pred C
Q 022058 192 T 192 (303)
Q Consensus 192 ~ 192 (303)
.
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 3
No 283
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-15 Score=113.61 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|||..+++++|+++|++|..|.|..+.+. +|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999822468888775 3599999999999999999 9999999999999999
Q ss_pred CCCCCCCCCCC
Q 022058 290 KTPVRPRVTRP 300 (303)
Q Consensus 290 ~~~~~~r~~r~ 300 (303)
++..+.+..+.
T Consensus 87 ~~~~~~~~~~~ 97 (99)
T 2cpd_A 87 KPVDKDSSGPS 97 (99)
T ss_dssp CCCCCCCCCCS
T ss_pred CCCCCCCCCCC
Confidence 98765544433
No 284
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=119.83 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~ 291 (303)
..+|||+|||+.+++++|+++|++| .|.+|.|+.|+ |+++|||||+|.+.++|.+|+.||+..|+||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999998 58999999885 8899999999999999999999999999999999988854
No 285
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1.5e-16 Score=118.39 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=72.7
Q ss_pred ccceEEEcCCCCCCCHHHHH----HHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 212 CSRTVYCTNIDKKVPQAEVK----QFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~----~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
+.++|||+|||..+++++|+ ++|++| |.|..|.+.. .|.++|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 56899999999999999999 999999 9999999874 35677899999999999999998 9999999999999
Q ss_pred eecCCCC
Q 022058 287 SPSKTPV 293 (303)
Q Consensus 287 ~~a~~~~ 293 (303)
.|+++..
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998764
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-16 Score=114.74 Aligned_cols=77 Identities=29% Similarity=0.381 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCCC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~ 193 (303)
...++|||+|||+++++++|+++|+.||.|.+| +.+..+.+ ||||+|.+.++|.+|+.||+..+.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 356799999999999999999999999999987 55555444 999999999999999999999999999999987544
No 287
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=112.60 Aligned_cols=73 Identities=16% Similarity=0.407 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-h-CCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-C-SGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l-~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|..+.++++ +|||||+|.+.++|.+|+. | ||..+.|+.|+|.|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45899999999999999999999999 99999999975 4699999999999999998 8 999999999999998
Q ss_pred C
Q 022058 290 K 290 (303)
Q Consensus 290 ~ 290 (303)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 288
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=113.94 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=69.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
++|||+|||..+++++|+++|++| |.|..+.+++++ +.++|||||+|.+.++|.+|+. ++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999 999999999985 7889999999999999999999 88 9999999999987
No 289
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=123.36 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=72.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
....++|||+|||..+++++|+++|++| |.|..+.|++++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456899999999999999999999999 999999999984 6889999999999999999998 9999999999999
Q ss_pred eec
Q 022058 287 SPS 289 (303)
Q Consensus 287 ~~a 289 (303)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 290
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.3e-16 Score=124.43 Aligned_cols=78 Identities=24% Similarity=0.292 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCcee--EEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVV--DCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~ 189 (303)
....++|||+|||+++|+++|+++|+.| .|. +|+|+.|+.+ ++|||||+|.+.++|++||++++..|+||.|.|.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3457889999999999999999999999 566 8999988766 89999999999999999999788999999999988
Q ss_pred cC
Q 022058 190 SK 191 (303)
Q Consensus 190 ~~ 191 (303)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 291
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=3.7e-16 Score=119.97 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=73.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
+.++|||+|||..+++++|+++|++| |.|..|.|+.+. .++|||||+|.+.++|.+|+. |||..+.|+.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45899999999999999999999999 999999999874 468999999999999999999 99999999999999998
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 292
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=5.9e-16 Score=116.56 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
...++|||+|||+++++++|+++|+.||.|.+|.++ +|||||+|.+.++|.+|+. ||+..+.|++|.|.++.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 356889999999999999999999999999999987 4699999999999999999 999999999999999876
Q ss_pred CC
Q 022058 193 AI 194 (303)
Q Consensus 193 ~~ 194 (303)
..
T Consensus 83 ~~ 84 (103)
T 2dgu_A 83 PD 84 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 293
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.5e-16 Score=114.50 Aligned_cols=74 Identities=27% Similarity=0.432 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcC--CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
...++|||+|||+++++++|+++|+.| |.|.++.++ +|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 357899999999999999999999999 999999875 5799999999999999999 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
++.
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 294
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.1e-16 Score=119.15 Aligned_cols=80 Identities=28% Similarity=0.435 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 022058 113 DSVRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v 187 (303)
....++|||+|||+++++++|+ ++|+.||.|.+|.++.. +.++|||||+|.+.++|.+|+. |||..+.|++|.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467899999999999999999 99999999999998742 2267999999999999999998 9999999999999
Q ss_pred eecCCC
Q 022058 188 LPSKTA 193 (303)
Q Consensus 188 ~~~~~~ 193 (303)
.++.+.
T Consensus 84 ~~a~~~ 89 (97)
T 1nu4_A 84 QYAKTD 89 (97)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 998643
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.4e-16 Score=117.23 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
....++|||+|||+ ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34688999999998 99999999999999999999995 6899999999999999999 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
...
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 654
No 296
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=124.08 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCce----eEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEe
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVL 188 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i----~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~ 188 (303)
...++|||+|||+++|+++|+++|+.||.| .+|.|+.+..+ ++|||||+|.+.++|.+||+.|+..++||.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999975 68999998654 7999999999999999999989999999999998
Q ss_pred ecC
Q 022058 189 PSK 191 (303)
Q Consensus 189 ~~~ 191 (303)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 764
No 297
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.3e-16 Score=126.34 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcc---eeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGE---VTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~---i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
...+|||+|||+++|+++|+++|++| |. |..|.|++|+ |+++|||||+|.+.++|.+|+.|||..|+|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~--G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDC--TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTC--CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45899999999999999999999999 99 8899999885 889999999999999999999999999999999999
Q ss_pred ecCC
Q 022058 288 PSKT 291 (303)
Q Consensus 288 ~a~~ 291 (303)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9864
No 298
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=2.4e-16 Score=135.84 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--ceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++++.+ ++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 9999999998754 79999999999999999999 999999999999999
Q ss_pred cCC
Q 022058 190 SKT 192 (303)
Q Consensus 190 ~~~ 192 (303)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-17 Score=122.30 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC--CCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~--~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
...++|||+|||+++++++|+++|+.||.|.. .++.+.. .++|||||+|.+.++|.+|++||+..+.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999999987 5555543 37999999999999999999999999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 300
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=5.4e-16 Score=118.17 Aligned_cols=73 Identities=23% Similarity=0.481 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||++ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|.+|+. ||+..+.|+.|.|.++..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4689999999999 999999999999999999998 46899999999999999997 999999999999999864
Q ss_pred C
Q 022058 193 A 193 (303)
Q Consensus 193 ~ 193 (303)
.
T Consensus 100 ~ 100 (110)
T 1wf1_A 100 P 100 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 301
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=121.44 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcc---eeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGE---VTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVS 287 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~---i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~ 287 (303)
...+|||+|||+.+++++|+++|+.| |. |..|.|+.+. |+++|||||+|.+.++|.+|+.|||..++|+.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~--g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDC--RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTS--CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc--CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 45899999999999999999999998 88 8999999885 789999999999999999999999999999999999
Q ss_pred ecCCC
Q 022058 288 PSKTP 292 (303)
Q Consensus 288 ~a~~~ 292 (303)
++.+.
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98753
No 302
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=3.6e-16 Score=114.34 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..++|||+|||+++++++|+++|+.| .|.++.+. .++|||||+|.+.++|.+|+. |||..+.|++|.|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 56889999999999999999999999 99999885 468999999999999999999 9999999999999998544
No 303
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=6.7e-17 Score=128.34 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~ 191 (303)
....++|||+|||+++|+++|+++|+.|| |.+|.|+.++.+ ++|||||+|.+.++|++||.+|+..+.||.|.|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34578899999999999999999999999 679999998765 8999999999999999999999999999999999876
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 304
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.9e-16 Score=117.61 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| |.|..|.|+++ +|||||+|.+.++|.+|+. |||..+.|+.|.|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999 99999999864 4699999999999999998 99999999999999997
Q ss_pred CCCC
Q 022058 291 TPVR 294 (303)
Q Consensus 291 ~~~~ 294 (303)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6443
No 305
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=125.98 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEE--------EEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCe
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL--------RLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQ 282 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v--------~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~ 282 (303)
+.++|||+|||+.+++++|+.+|++| |.|..+ .+. ..|+++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRY--VDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGG--CCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--CCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 45899999999999999999999999 998774 222 247889999999999999999999 999999999
Q ss_pred eeEEeecCCCCCC
Q 022058 283 PIRVSPSKTPVRP 295 (303)
Q Consensus 283 ~l~v~~a~~~~~~ 295 (303)
.|+|.++++....
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999865433
No 306
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=118.84 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCce----eEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i----~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
...++|||+|||+++++++|+++|+.||.| ..+.+. ...++|||||+|.+.++|.+|+. ||+..+.|++|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999999 455554 33478999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 022058 189 PSKTAI 194 (303)
Q Consensus 189 ~~~~~~ 194 (303)
++....
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 987543
No 307
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=116.23 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~ 192 (303)
...++|||+|||+++++++|+++|+.||.|..+ .....++|||||+|.+.++|.+|+. |||..+.|++|.|.++.+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 357899999999999999999999999998766 3333479999999999999999999 999999999999999864
Q ss_pred C
Q 022058 193 A 193 (303)
Q Consensus 193 ~ 193 (303)
.
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 308
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=115.05 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCc-eeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCC-cccCCeeEEEee
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG-TMLGYYPVRVLP 189 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g-~~~~g~~i~v~~ 189 (303)
....++|||+|||+++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|+. ||+ ..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 346789999999999999999999999999 6666663 36899999999999999998 999 999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
+.+.
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8654
No 309
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=115.55 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=69.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
.....++|||+|||+++++++|+++|+.|+ .+.++.+..+ ++|||||+|.+.++|.+|+. ||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344678999999999999999999999874 6777777644 78999999999999999998 99999999999999
Q ss_pred ecCCC
Q 022058 189 PSKTA 193 (303)
Q Consensus 189 ~~~~~ 193 (303)
++++.
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98654
No 310
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=3.1e-16 Score=117.75 Aligned_cols=77 Identities=18% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+. ++..+.|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 4688999999999999999999999999999999998744 79999999999999999999 99999999999998754
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=119.41 Aligned_cols=75 Identities=12% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCccc-----CCeeE
Q 022058 114 SVRRTVYV--SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTML-----GYYPV 185 (303)
Q Consensus 114 ~~~~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~-----~g~~i 185 (303)
...++||| |||++++++++|+++|++||.|.+|.++. ++|||||+|.+.++|++|++ |||.++ .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 35788999 77999999999999999999999998864 37899999999999999998 999988 68999
Q ss_pred EEeecCC
Q 022058 186 RVLPSKT 192 (303)
Q Consensus 186 ~v~~~~~ 192 (303)
.|.++..
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999753
No 312
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=115.27 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEE-EEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-RVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
...++|||+|||+++++++|+++|+.||.|.+| .++.++.+ |.|||+|.+.++|.+|+. |||..+.|++|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 357889999999999999999999999999999 48877654 459999999999999998 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
+.
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 313
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.8e-16 Score=115.36 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=69.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| |.|.++.+.+ ++|||||+|.+.++|.+|+. |||..++|+.|+|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999 9999999984 45699999999999999998 99999999999999998
Q ss_pred C
Q 022058 291 T 291 (303)
Q Consensus 291 ~ 291 (303)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 6
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=8.9e-16 Score=118.04 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=67.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCee-----eE
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQP-----IR 285 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~-----l~ 285 (303)
...+|||+|||..+++++|+++|++| |.|..|.|+.+ |||||+|.+.++|.+||+ |||..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34889999999999999999999999 99999999887 699999999999999999 9999999998 88
Q ss_pred EeecCCCCCCC
Q 022058 286 VSPSKTPVRPR 296 (303)
Q Consensus 286 v~~a~~~~~~r 296 (303)
|..+.+....+
T Consensus 88 v~~~~~~~~~~ 98 (115)
T 3beg_B 88 VKVDGPRSPSY 98 (115)
T ss_dssp EEECC----CC
T ss_pred eccCCCCCCCC
Confidence 88887655433
No 315
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3.9e-16 Score=117.22 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=73.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| |.|..|.|+++. |.++|||||+|.+.++|.+|+. +|..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 45899999999999999999999999 999999999986 7789999999999999999999 9999999999999986
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
+..
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1e-15 Score=112.26 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=62.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcc--cCCeeEEEeec
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM--LGYYPVRVLPS 190 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~--~~g~~i~v~~~ 190 (303)
.....+|||+|||+++|+++|+++|+.||.|.+|.++++ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 346789999999999999999999999999999999875 68999999999999984 44444 46999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=5.1e-16 Score=133.76 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=73.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCc--ceeEEEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGG--EVTRLRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G--~i~~v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
..++|||+|||..+++++|+++|++| | .|.+|.|++|+ ++++|||||+|.+.++|.+||. |||..|.|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT--TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH--CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 45789999999999999999999999 9 99999999984 7899999999999999999999 9999999999999
Q ss_pred eecCCC
Q 022058 287 SPSKTP 292 (303)
Q Consensus 287 ~~a~~~ 292 (303)
.+++++
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998653
No 318
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=8.1e-16 Score=127.33 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
...++|||+|||+.+++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|.+|+. ||+..+.|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35688999999999999999999999999999999998844 79999999999999999999 99999999999999986
Q ss_pred CC
Q 022058 192 TA 193 (303)
Q Consensus 192 ~~ 193 (303)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 319
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-17 Score=126.88 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeE--------EEEeeCCCC--CceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD--------CRVCGDPHS--VLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~--~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
....++|||+|||+++++++|+++|+.||.|.+ |.++.++.+ ++|||||+|.+.++|.+|+. ||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 889888654 79999999999999999999 9999999
Q ss_pred CeeEEEeecCCC
Q 022058 182 YYPVRVLPSKTA 193 (303)
Q Consensus 182 g~~i~v~~~~~~ 193 (303)
|++|.|.++.+.
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999998654
No 320
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.3e-15 Score=110.52 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=68.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.....++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+. ||+..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 3446789999996 89999999999999999999984 357899999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
.+.
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 321
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=1.4e-15 Score=123.20 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEeecC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGY--YPVRVLPSK 191 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g--~~i~v~~~~ 191 (303)
.-..|||+||++.+|+++|+++|+.||.|.+|.+..+. ++|||||+|.+.++|.+|++ |||..|.| ++|+|.|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34569999999999999999999999999999997543 57999999999999999999 99999965 999999997
Q ss_pred CCC
Q 022058 192 TAI 194 (303)
Q Consensus 192 ~~~ 194 (303)
...
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 653
No 322
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-16 Score=122.38 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=70.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecC--CCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGD--HVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d--~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
...+|||+|||+.+++++|+++|++| |.|..+.++.+ .|+++|||||+|.+.++|.+|+.|||..|+|+.|.|.++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKL--DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSS--CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45899999999999999999999999 99988544443 378999999999999999999999999999999999998
Q ss_pred CC
Q 022058 290 KT 291 (303)
Q Consensus 290 ~~ 291 (303)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 323
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.8e-15 Score=118.09 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=68.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceE-EEEEecCHHHHHHHHH-hCCcccCC--eeEEEeecCC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF-AFVEFADEHGARAALN-LGGTMLGY--YPVRVLPSKT 192 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~-~fV~f~~~~~A~~Ai~-l~g~~~~g--~~i~v~~~~~ 192 (303)
-.|||+||++.+|+++|+++|+.||.|.+|.++.+. +|| |||+|.+.++|.+|++ |||..|.| ++|+|.+++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 458899999999999999999999999999988643 588 9999999999999999 99999987 9999999976
Q ss_pred CC
Q 022058 193 AI 194 (303)
Q Consensus 193 ~~ 194 (303)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 324
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=115.14 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=68.7
Q ss_pred cccceEEE--cCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCcee-----CCe
Q 022058 211 MCSRTVYC--TNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVL-----GSQ 282 (303)
Q Consensus 211 ~~~~~l~V--~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~-----~g~ 282 (303)
.+.++||| +||+..+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|++ |||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35688999 6799999999999999999 99999998765 4699999999999999998 999998 789
Q ss_pred eeEEeecCCC
Q 022058 283 PIRVSPSKTP 292 (303)
Q Consensus 283 ~l~v~~a~~~ 292 (303)
.|.|.|++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999744
No 325
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.7e-16 Score=118.11 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=69.5
Q ss_pred ccccceEEEcCCCCC-CCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC--CceeCCeeeE
Q 022058 210 EMCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS--GMVLGSQPIR 285 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~--g~~~~g~~l~ 285 (303)
..+.++|||+|||+. +++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|+. || +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 9999999999999 99999999865 4699999999999999998 75 5679999999
Q ss_pred EeecCCCC
Q 022058 286 VSPSKTPV 293 (303)
Q Consensus 286 v~~a~~~~ 293 (303)
|.|+++..
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997543
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=122.54 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEE--------EEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCe
Q 022058 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC--------RVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYY 183 (303)
Q Consensus 113 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~--------~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~ 183 (303)
....++|||+|||+++++++|+++|+.||.|.++ .+.. .+.++|||||+|.+.++|.+|+. |||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3467899999999999999999999999998774 2222 23489999999999999999999 999999999
Q ss_pred eEEEeecCCC
Q 022058 184 PVRVLPSKTA 193 (303)
Q Consensus 184 ~i~v~~~~~~ 193 (303)
+|.|.+++..
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998653
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.7e-17 Score=125.93 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=75.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeE--------EEEecCC--CCcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTR--------LRLLGDH--VHSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~--------v~i~~d~--~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
+.++|||+|||..+++++|+++|++| |.|.. |.|+.++ +.++|||||+|.+.++|.+|+. |||..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45899999999999999999999999 99998 8898884 6889999999999999999998 9999999
Q ss_pred CeeeEEeecCCCCC
Q 022058 281 SQPIRVSPSKTPVR 294 (303)
Q Consensus 281 g~~l~v~~a~~~~~ 294 (303)
|+.|+|.++++...
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987643
No 328
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-15 Score=109.58 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=67.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~ 291 (303)
..++|||+|||..+++++|+++|++| |.|.+| +.+....+ ||||+|.+.++|.+|+.|||..|+|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 44799999999999999999999999 999998 33332222 99999999999999999999999999999999865
Q ss_pred CC
Q 022058 292 PV 293 (303)
Q Consensus 292 ~~ 293 (303)
..
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 329
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=111.28 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=70.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEE-EEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRL-RLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v-~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|..| .|+.++.. |.|||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45889999999999999999999999 999999 58887532 349999999999999998 9999999999999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
++..
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8763
No 330
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=120.65 Aligned_cols=78 Identities=24% Similarity=0.169 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcce----eEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeE
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV----TRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIR 285 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i----~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~ 285 (303)
....+|||+|||+.+|+++|+++|++| |.| ..|.|+.+. |+++|||||+|.+.++|.+|+.+|+..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~--g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQH--CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTT--SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 345899999999999999999999999 875 689998875 7899999999999999999999899999999999
Q ss_pred EeecC
Q 022058 286 VSPSK 290 (303)
Q Consensus 286 v~~a~ 290 (303)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98875
No 331
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.4e-15 Score=116.93 Aligned_cols=73 Identities=22% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCee-----EEEe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYP-----VRVL 188 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~-----i~v~ 188 (303)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+||+ ||+..|.|+. |.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4688999999999999999999999999999999876 899999999999999999 9999999998 6776
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
...+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6544
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=3.5e-15 Score=116.48 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=68.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccE-EEEEEcCHHHHHHHHH-hCCceeCC--eeeEEee
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CSGMVLGS--QPIRVSP 288 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~-afV~f~~~e~A~~Ai~-l~g~~~~g--~~l~v~~ 288 (303)
...|||+||++.+|+++|+++|++| |.|.+|.|..+. +|+ |||+|.+.++|.+|++ |||..|.| +.|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4568899999999999999999999 999999988653 467 9999999999999999 99999988 9999999
Q ss_pred cCCC
Q 022058 289 SKTP 292 (303)
Q Consensus 289 a~~~ 292 (303)
+++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9876
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-14 Score=107.98 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=67.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
+.++|||+|| .+++++|+++|++| |.|.+|.|. .++|||||+|.+.++|.+|+. |||..+.|+.|+|.|++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4589999996 89999999999999 999999995 455799999999999999998 99999999999999998
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
+..
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=3.4e-15 Score=120.91 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCC--eeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGS--QPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g--~~l~v~~a 289 (303)
..+|||+||++.+++++|+++|++| |.|.+|.|..+. ++|||||+|.+.++|.+|++ |||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4679999999999999999999999 999999997543 56899999999999999999 99999965 99999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
++..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8763
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=2.2e-15 Score=124.65 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=75.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
..++|||+|||..+++++|+++|++| |.|..|.|..+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|.|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHT--SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46899999999999999999999999 999999999986 7889999999999999999998 9999999999999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7654
No 336
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=110.81 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~ 291 (303)
..++|||+|||..+++++|+++|++| |.|.+|.|+.+ ++|||||+|.+.++|++|+.. +..+.|+.|.|.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 45899999999999999999999999 99999999876 568999999999999754332 3456899999999987
Q ss_pred CCCCCCCC
Q 022058 292 PVRPRVTR 299 (303)
Q Consensus 292 ~~~~r~~r 299 (303)
.....+.+
T Consensus 78 ~~~~~~~~ 85 (88)
T 1wf0_A 78 KHNSNSGP 85 (88)
T ss_dssp CCCCCSCS
T ss_pred CCCCCCCC
Confidence 76554443
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.7e-15 Score=110.15 Aligned_cols=71 Identities=27% Similarity=0.479 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------ceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCe
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSC----G-------QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~ 183 (303)
..++|||+|||+++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+.|||..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 46899999999999999999999999 8 9999999765 6899999999999999999999999999
Q ss_pred eEEEee
Q 022058 184 PVRVLP 189 (303)
Q Consensus 184 ~i~v~~ 189 (303)
.|.|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 338
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=9.6e-16 Score=119.51 Aligned_cols=78 Identities=28% Similarity=0.211 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCccee-EEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVT-RLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~-~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a 289 (303)
...+|||+|||+.+++++|+++|++| +.+. +|.|+.|+ |+++|||||+|.+.++|.+|+.+++..|+|+.|.|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 45789999999999999999999998 6443 89999885 88999999999999999999998889999999999988
Q ss_pred CC
Q 022058 290 KT 291 (303)
Q Consensus 290 ~~ 291 (303)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 339
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=4.6e-15 Score=115.20 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=65.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceE-EEEEecCHHHHHHHHH-hCCcccCC--eeEEEeecCCCC
Q 022058 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF-AFVEFADEHGARAALN-LGGTMLGY--YPVRVLPSKTAI 194 (303)
Q Consensus 119 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~-~fV~f~~~~~A~~Ai~-l~g~~~~g--~~i~v~~~~~~~ 194 (303)
|||+|||+.+++++|+++|+.||.|.+|.++.. .|| |||+|.+.++|.+|++ |||..|.| ++|+|.++++..
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 789999999999999999999999999999753 286 9999999999999999 99999977 699999987653
No 340
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.5e-15 Score=115.72 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=67.4
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhcCCceeEEEEeeCCCC--CceEEEEEecC----HHH----HHHHHH---hCCcc
Q 022058 117 RTVYVSDI----DQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD----EHG----ARAALN---LGGTM 179 (303)
Q Consensus 117 ~~l~V~nl----p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~G~~fV~f~~----~~~----A~~Ai~---l~g~~ 179 (303)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+ ++|||||+|.+ +++ |.+|+. +||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999987 89999999996 434 788875 79999
Q ss_pred cCCeeEEEeecC
Q 022058 180 LGYYPVRVLPSK 191 (303)
Q Consensus 180 ~~g~~i~v~~~~ 191 (303)
|+|++|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 341
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=7.8e-15 Score=110.84 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=70.8
Q ss_pred cccceEEEcCCCC-----CCCHHHHHHHhhhhcCcceeEEEEecCC---CCcccEEEEEEcCHHHHHHHHH-hCCceeCC
Q 022058 211 MCSRTVYCTNIDK-----KVPQAEVKQFFEAACGGEVTRLRLLGDH---VHSTRIAFVEFAVAESAILALN-CSGMVLGS 281 (303)
Q Consensus 211 ~~~~~l~V~nL~~-----~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g 281 (303)
.++++|+|.||.. .-++++|+++|++| |.|.+|.|++++ +.++|+|||+|.+.++|.+|+. |||+.+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999999963 23689999999999 999999999874 4789999999999999999998 99999999
Q ss_pred eeeEEeecCCC
Q 022058 282 QPIRVSPSKTP 292 (303)
Q Consensus 282 ~~l~v~~a~~~ 292 (303)
|.|+|.++.+.
T Consensus 84 r~i~v~~a~~~ 94 (105)
T 2pe8_A 84 RVVKACFYNLD 94 (105)
T ss_dssp EECEEEECCHH
T ss_pred cEEEEEEcCHH
Confidence 99999999753
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=5.9e-15 Score=107.77 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
..++|||+|||..+++++|+++|++| .|.++.+. +++|||||+|.+.++|.+|+. |||..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35789999999999999999999998 68888885 567899999999999999999 99999999999999996
Q ss_pred CCC
Q 022058 291 TPV 293 (303)
Q Consensus 291 ~~~ 293 (303)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=110.02 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCCC
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~~ 193 (303)
..++|||+|||+++++++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|++|+.. ...+.|++|.|.++.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999865 679999999999999865432 34558999999998654
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=108.29 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCEEEEcCCCCCCCHHH----HHHHhhcC-CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEee
Q 022058 116 RRTVYVSDIDQNITEER----LAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~----l~~~F~~~-G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~ 189 (303)
.+.|||+|||+.+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++ |||..+.||+|+|.+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 34499999999999988 55899999 5999881 2899999999999999998 999999999999999
Q ss_pred cCCC
Q 022058 190 SKTA 193 (303)
Q Consensus 190 ~~~~ 193 (303)
++..
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 8654
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=5.1e-15 Score=124.19 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHHhCCcccCCeeEEEeecCC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~~~~~ 192 (303)
.++|||+|||+++++++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|.+|+...+..+.|++|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 588999999999999999999999999999999998765 79999999999999999999445699999999999754
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=7.1e-15 Score=107.69 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=62.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCce--eCCeeeEEeec
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMV--LGSQPIRVSPS 289 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~--~~g~~l~v~~a 289 (303)
+..+|||+|||+.+++++|+++|++| |.|.+|.|+++ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 45899999999999999999999999 99999999986 67899999999999883 44544 56999999999
Q ss_pred CCC
Q 022058 290 KTP 292 (303)
Q Consensus 290 ~~~ 292 (303)
.|.
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=107.44 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=63.4
Q ss_pred cce-EEEcCCCCCCCHHH----HHHHhhhhcCc-ceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeE
Q 022058 213 SRT-VYCTNIDKKVPQAE----VKQFFEAACGG-EVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIR 285 (303)
Q Consensus 213 ~~~-l~V~nL~~~~t~~~----L~~~F~~~~~G-~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~ 285 (303)
..+ |||+|||+.+++++ |+++|++| | .|.+|. + |+|||+|.+.++|.+|++ |||..+.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y--GG~Vl~Vt-----g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNC--GGKVLSIT-----G---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTT--TCCEEECC-----T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHc--CCeeEEEe-----c---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 355 99999999999987 55899998 7 999981 2 799999999999999998 999999999999
Q ss_pred EeecCCCC
Q 022058 286 VSPSKTPV 293 (303)
Q Consensus 286 v~~a~~~~ 293 (303)
|.||+...
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998654
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=1.8e-14 Score=120.79 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=90.7
Q ss_pred CHHHHHHHHH-h--CCcccCCeeEEEeecCCCCCCCCCCCCCCc--ccccccccceEEEcCCCCCCCHHHHHHHhhhhcC
Q 022058 165 DEHGARAALN-L--GGTMLGYYPVRVLPSKTAILPVNPTFLPRS--EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239 (303)
Q Consensus 165 ~~~~A~~Ai~-l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~ 239 (303)
+.+.+..|+. . ....+.+....|....... .|.. ........++|||+|||..+++++|+++|++|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p-------~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-- 133 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP-------LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK-- 133 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC-------CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS--
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC-------CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC--
Confidence 5677777887 5 4555555545555431110 1111 11123356899999999999999999999999
Q ss_pred cceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEeecCCCC
Q 022058 240 GEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV 293 (303)
Q Consensus 240 G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~a~~~~ 293 (303)
|.|..|.|+++. +.++|||||+|.+.++|.+|+.+.+..+.|+.|.|.+++.-.
T Consensus 134 G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 134 GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 999999999885 788999999999999999999954569999999999987644
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=111.82 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=62.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCC-----CCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v 187 (303)
...++|||+|||+++++++|+++|+.||.|. +.++.+.. .++|||||+|.+.++|++||+ ++ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578899999999999999999999999999 88877654 379999999999999999998 73 356666665
Q ss_pred eec
Q 022058 188 LPS 190 (303)
Q Consensus 188 ~~~ 190 (303)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=9.2e-15 Score=113.38 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeec
Q 022058 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPS 190 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~ 190 (303)
.+...++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+. |||..+.|+.|.|.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 3446889999996 79999999999999999999996 457999999999999999998 9999999999999998
Q ss_pred CCC
Q 022058 191 KTA 193 (303)
Q Consensus 191 ~~~ 193 (303)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=112.35 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=66.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccE-EEEEEcCHHHHHHHHH-hCCceeCC--eeeEEeec
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRI-AFVEFAVAESAILALN-CSGMVLGS--QPIRVSPS 289 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~-afV~f~~~e~A~~Ai~-l~g~~~~g--~~l~v~~a 289 (303)
..|||+||++.+++++|+++|++| |.|.+|.|... .|+ |||+|.+.++|..|+. |||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 457899999999999999999999 99999998753 276 9999999999999998 99999987 69999999
Q ss_pred CCCC
Q 022058 290 KTPV 293 (303)
Q Consensus 290 ~~~~ 293 (303)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8763
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.1e-14 Score=108.47 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhcCCceeEEEEeeCCC---CCceEEEEEecCHHHHHHHHH-hCCcccCCee
Q 022058 114 SVRRTVYVSDIDQ-----NITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAFVEFADEHGARAALN-LGGTMLGYYP 184 (303)
Q Consensus 114 ~~~~~l~V~nlp~-----~~t~~~l~~~F~~~G~i~~~~i~~~~~---~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~ 184 (303)
..+++|+|+||.. +-++++|++.|++||.|.+|.|+.++. .++|||||+|.+.++|.+|+. |||..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 236899999999999999999999864 379999999999999999998 9999999999
Q ss_pred EEEeecCC
Q 022058 185 VRVLPSKT 192 (303)
Q Consensus 185 i~v~~~~~ 192 (303)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999753
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.1e-14 Score=112.90 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=68.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeec
Q 022058 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPS 289 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a 289 (303)
...++|||+|| .+++++|+++|++| |.|.+|.+. .++|||||+|.+.++|.+|+. |||..+.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35689999996 69999999999999 999999996 456799999999999999998 9999999999999999
Q ss_pred CCCCC
Q 022058 290 KTPVR 294 (303)
Q Consensus 290 ~~~~~ 294 (303)
++...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=110.81 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=66.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC-----CCcccEEEEEEcCHHHHHHHHH-h---CCc-----
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH-----VHSTRIAFVEFAVAESAILALN-C---SGM----- 277 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~-----~~~~g~afV~f~~~e~A~~Ai~-l---~g~----- 277 (303)
..++|||+|||..+++++|+++|++| |.|. +.++.+. |+++|||||+|.+.++|.+|++ | ||.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF--GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT--CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc--CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 45889999999999999999999999 9999 8887764 5789999999999999999998 7 666
Q ss_pred ---eeCCeeeEEeecCCCCC
Q 022058 278 ---VLGSQPIRVSPSKTPVR 294 (303)
Q Consensus 278 ---~~~g~~l~v~~a~~~~~ 294 (303)
.+.++.+.|..+.....
T Consensus 84 ~~~~~~~~~~~v~p~~~~d~ 103 (114)
T 2dnl_A 84 SSPTIKDKPVQIRPWNLSDS 103 (114)
T ss_dssp CCSSSCSEEEEEECCCCCCC
T ss_pred cCCCcCCCeeeccCCcccCC
Confidence 34566677766554443
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=4.7e-14 Score=102.44 Aligned_cols=71 Identities=23% Similarity=0.452 Sum_probs=65.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhhhcCc-----------ceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeC
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGG-----------EVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLG 280 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-----------~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~ 280 (303)
..++|||+|||..+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+.|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQ--MRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHH--HHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH--hhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 45899999999999999999999998 5 7999999876 46999999999999999999999999
Q ss_pred CeeeEEee
Q 022058 281 SQPIRVSP 288 (303)
Q Consensus 281 g~~l~v~~ 288 (303)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.2e-14 Score=123.53 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCccc---
Q 022058 114 SVRRTVYVSDIDQNI---------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTML--- 180 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~---------t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~--- 180 (303)
...++|||+|||..+ ++++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|++ |+|+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 357899999999998 7999999999999999999986 36899999999999999998 999999
Q ss_pred ---------CCeeEEEeecCCC
Q 022058 181 ---------GYYPVRVLPSKTA 193 (303)
Q Consensus 181 ---------~g~~i~v~~~~~~ 193 (303)
.|+.|.|.|+...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccCCCCEEEEEEccCC
Confidence 8999999998654
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-13 Score=105.60 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=68.7
Q ss_pred cccceEEEcCCCCCCC-----------HHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCce
Q 022058 211 MCSRTVYCTNIDKKVP-----------QAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMV 278 (303)
Q Consensus 211 ~~~~~l~V~nL~~~~t-----------~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~ 278 (303)
.+.++|+|+||..... +++|+++|++| |.|..|.| .+. .++|||||+|.+.++|.+|+. |||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3568999999954432 58999999999 99999966 454 378999999999999999998 99999
Q ss_pred eCCeeeEEeecCCCCC
Q 022058 279 LGSQPIRVSPSKTPVR 294 (303)
Q Consensus 279 ~~g~~l~v~~a~~~~~ 294 (303)
+.|+.|+|.++.+...
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987543
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.5e-14 Score=106.08 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=67.9
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcc
Q 022058 112 EDSVRRTVYVSDIDQNIT-----------EERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTM 179 (303)
Q Consensus 112 ~~~~~~~l~V~nlp~~~t-----------~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~ 179 (303)
.+...++|+|.||....+ +++|+++|++||.|.+|.| .+.. ++|||||+|.+.++|.+|+. |||..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 445689999999944332 6899999999999999966 4443 79999999999999999998 99999
Q ss_pred cCCeeEEEeecCC
Q 022058 180 LGYYPVRVLPSKT 192 (303)
Q Consensus 180 ~~g~~i~v~~~~~ 192 (303)
+.|++|.|.++.+
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999864
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4e-14 Score=109.00 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=67.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhhhcCcceeEEEEecCC--CCcccEEEEEEcC----HHH----HHHHHH---hCC
Q 022058 214 RTVYCTNI----DKKVPQAEVKQFFEAACGGEVTRLRLLGDH--VHSTRIAFVEFAV----AES----AILALN---CSG 276 (303)
Q Consensus 214 ~~l~V~nL----~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~--~~~~g~afV~f~~----~e~----A~~Ai~---l~g 276 (303)
..|||+|| |+.+++++|+.+|++| |.|.+|.++.|+ |.|+|||||+|.+ +++ |.+|+. |||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 68999999 9999999999999999 999999999997 7899999999996 433 788875 799
Q ss_pred ceeCCeeeEEeecCC
Q 022058 277 MVLGSQPIRVSPSKT 291 (303)
Q Consensus 277 ~~~~g~~l~v~~a~~ 291 (303)
..|+|+.|+|.+.+.
T Consensus 81 ~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 CFIMGFKFEVILNKH 95 (136)
T ss_dssp EEETTEEEEEEECCT
T ss_pred CeecCcEEEEEECcc
Confidence 999999999998753
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=7.5e-14 Score=105.43 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=68.1
Q ss_pred ccceEEEcCC--CCCCC--------HHHHHHHhhhhcCcceeEEEEecCC----CCcccEEEEEEcCHHHHHHHHH-hCC
Q 022058 212 CSRTVYCTNI--DKKVP--------QAEVKQFFEAACGGEVTRLRLLGDH----VHSTRIAFVEFAVAESAILALN-CSG 276 (303)
Q Consensus 212 ~~~~l~V~nL--~~~~t--------~~~L~~~F~~~~~G~i~~v~i~~d~----~~~~g~afV~f~~~e~A~~Ai~-l~g 276 (303)
+++.|.|.|+ |..+. +++|+++|++| |.|.+|.|+++. +.++|+|||+|.+.++|.+|+. |||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 5688999998 33343 37999999999 999999999885 2579999999999999999998 999
Q ss_pred ceeCCeeeEEeecCC
Q 022058 277 MVLGSQPIRVSPSKT 291 (303)
Q Consensus 277 ~~~~g~~l~v~~a~~ 291 (303)
+.++||.|+|.|+.+
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999864
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=5.3e-14 Score=121.16 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=68.6
Q ss_pred ccceEEEcCCCCCC---------CHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCcee--
Q 022058 212 CSRTVYCTNIDKKV---------PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVL-- 279 (303)
Q Consensus 212 ~~~~l~V~nL~~~~---------t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~-- 279 (303)
..++|||+||+..+ ++++|+.+|++| |.|.+|.|+.+ +|||||+|.+.++|..|+. |||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 46899999999998 799999999999 99999999875 5699999999999999998 999999
Q ss_pred ----------CCeeeEEeecCCCCCCCC
Q 022058 280 ----------GSQPIRVSPSKTPVRPRV 297 (303)
Q Consensus 280 ----------~g~~l~v~~a~~~~~~r~ 297 (303)
.|+.|.|.||+....|..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-------
T ss_pred cccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999987655543
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.8e-14 Score=107.65 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCceeEEEEeeCCCC-CceEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 022058 121 VSDIDQNITEERLAGLF------------SSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVR 186 (303)
Q Consensus 121 V~nlp~~~t~~~l~~~F------------~~~G~i~~~~i~~~~~~-~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~ 186 (303)
+.|||+.+++++|++.| ++||.|.+|.|+++..+ ++|||||+|.+.++|.+|+. |||..+.||+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888777766 99999999999987765 79999999999999999998 999999999999
Q ss_pred Eeec
Q 022058 187 VLPS 190 (303)
Q Consensus 187 v~~~ 190 (303)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9985
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2.2e-13 Score=102.82 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhcCCceeEEEEeeCCCC----CceEEEEEecCHHHHHHHHH-hCCcc
Q 022058 115 VRRTVYVSDI--DQNIT--------EERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAALN-LGGTM 179 (303)
Q Consensus 115 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~----~~G~~fV~f~~~~~A~~Ai~-l~g~~ 179 (303)
+++.|.+.|+ |..+. +++|++.|++||.|.+|.|+++..+ ++|||||+|.+.++|.+|+. |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 44443 3689999999999999999987653 68999999999999999998 99999
Q ss_pred cCCeeEEEeecC
Q 022058 180 LGYYPVRVLPSK 191 (303)
Q Consensus 180 ~~g~~i~v~~~~ 191 (303)
+.||+|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999864
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=5.3e-14 Score=106.08 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=60.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hhhcCcceeEEEEecCC-CCcccEEEEEEcCHHHHHHHHH-hCCceeCCee
Q 022058 218 CTNIDKKVPQAEVKQFF------------EAACGGEVTRLRLLGDH-VHSTRIAFVEFAVAESAILALN-CSGMVLGSQP 283 (303)
Q Consensus 218 V~nL~~~~t~~~L~~~F------------~~~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~ 283 (303)
+.||+..+++++|+++| ++| |.|.+|.|+++. ++++|||||+|.+.++|.+|+. |||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~--G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY--GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC--CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 44566666666666555 999 999999999886 6889999999999999999998 9999999999
Q ss_pred eEEeec
Q 022058 284 IRVSPS 289 (303)
Q Consensus 284 l~v~~a 289 (303)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999987
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=5.1e-13 Score=102.89 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHhhcCCceeEEEEeeCCCC------CceEEEEEecCHHHHHHHHH-hCCcccCC
Q 022058 115 VRRTVYVSDID--QNI---TEERLAGLFSSCGQVVDCRVCGDPHS------VLRFAFVEFADEHGARAALN-LGGTMLGY 182 (303)
Q Consensus 115 ~~~~l~V~nlp--~~~---t~~~l~~~F~~~G~i~~~~i~~~~~~------~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g 182 (303)
.+++|++.|+- .++ -+++|++.|++||.|.+|.|+.+..+ ++||+||+|.+.++|.+|+. |||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999984 233 36899999999999999999987541 57999999999999999998 99999999
Q ss_pred eeEEEeecC
Q 022058 183 YPVRVLPSK 191 (303)
Q Consensus 183 ~~i~v~~~~ 191 (303)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=97.72 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 022058 223 KKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKTPVRPR 296 (303)
Q Consensus 223 ~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~r 296 (303)
..+++++|+++|++| |.|..|.|+ ++++|||||+|.+.++|..|+. +++ +.|+.|+|.|++++...+
T Consensus 27 ~~~te~~L~~~F~~~--G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY--GEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTT--SCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhc--CCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 568999999999999 999999998 4678899999999999999998 655 679999999998776444
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=8.3e-13 Score=101.67 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=68.4
Q ss_pred cccceEEEcCCCC--CC---CHHHHHHHhhhhcCcceeEEEEecCC------CCcccEEEEEEcCHHHHHHHHH-hCCce
Q 022058 211 MCSRTVYCTNIDK--KV---PQAEVKQFFEAACGGEVTRLRLLGDH------VHSTRIAFVEFAVAESAILALN-CSGMV 278 (303)
Q Consensus 211 ~~~~~l~V~nL~~--~~---t~~~L~~~F~~~~~G~i~~v~i~~d~------~~~~g~afV~f~~~e~A~~Ai~-l~g~~ 278 (303)
.++++|+|.|+-. .+ -+++|++.|++| |.|.+|.|+++. +.++|++||+|.+.++|.+|+. |||+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 3678999999842 22 368999999999 999999999874 2467999999999999999998 99999
Q ss_pred eCCeeeEEeecCC
Q 022058 279 LGSQPIRVSPSKT 291 (303)
Q Consensus 279 ~~g~~l~v~~a~~ 291 (303)
|+||.|+|.|+..
T Consensus 96 f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGRKVVAEVYDQ 108 (118)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCcEEEEEEcCh
Confidence 9999999999854
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=6.8e-12 Score=95.89 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=64.8
Q ss_pred ccceEEEcCCCCCC----------CHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 212 CSRTVYCTNIDKKV----------PQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 212 ~~~~l~V~nL~~~~----------t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
++++|.|.|+=..- -+++|+++|++| |.|.+|.|.++. ++|+|||+|.+.++|.+|++ |||+.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45788888873321 136899999999 999999998764 58899999999999999998 9999999
Q ss_pred CeeeEEeecCC
Q 022058 281 SQPIRVSPSKT 291 (303)
Q Consensus 281 g~~l~v~~a~~ 291 (303)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999753
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8e-12 Score=93.23 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecCCC
Q 022058 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTA 193 (303)
Q Consensus 126 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~~~ 193 (303)
..+++++|+++|++||.|.+|.|+. .++|||||+|.+.++|.+|+. +++ +.|++|.|.|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 5689999999999999999999983 468999999999999999998 554 67999999998654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=3.6e-12 Score=115.42 Aligned_cols=75 Identities=12% Similarity=0.218 Sum_probs=64.9
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC---Ce--e
Q 022058 113 DSVRRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG---YY--P 184 (303)
Q Consensus 113 ~~~~~~l~V~n--lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~---g~--~ 184 (303)
....++|||+| |++.+|+++|+++|++||.|.+|.++. +||||||+|++.++|++|++ |||.++. |+ +
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 44678999999 578999999999999999999988754 57999999999999999999 9999883 45 6
Q ss_pred EEEeecC
Q 022058 185 VRVLPSK 191 (303)
Q Consensus 185 i~v~~~~ 191 (303)
|.|.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777763
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=8.5e-12 Score=95.35 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=64.9
Q ss_pred CCCCCEEEEcCCCC--CC--------CHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 113 DSVRRTVYVSDIDQ--NI--------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 113 ~~~~~~l~V~nlp~--~~--------t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
+..++.|.+.|+=. +. -+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+. |||..++
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34677899988832 21 145789999999999999997653 58999999999999999998 9999999
Q ss_pred CeeEEEeecC
Q 022058 182 YYPVRVLPSK 191 (303)
Q Consensus 182 g~~i~v~~~~ 191 (303)
||.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999974
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=3.9e-11 Score=108.63 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=64.9
Q ss_pred ccccceEEEcC--CCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeC---Ce-
Q 022058 210 EMCSRTVYCTN--IDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLG---SQ- 282 (303)
Q Consensus 210 ~~~~~~l~V~n--L~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~---g~- 282 (303)
..++.+|||+| |+..+|+++|+++|++| |.|.+|.+.++ +|||||+|.+.++|++|++ |||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44668999999 57899999999999999 99999888763 5799999999999999999 9999883 44
Q ss_pred -eeEEeecC
Q 022058 283 -PIRVSPSK 290 (303)
Q Consensus 283 -~l~v~~a~ 290 (303)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-10 Score=83.85 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=63.2
Q ss_pred cccceEEEcCCC----CCCCH----HHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCe
Q 022058 211 MCSRTVYCTNID----KKVPQ----AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQ 282 (303)
Q Consensus 211 ~~~~~l~V~nL~----~~~t~----~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~ 282 (303)
++..||+|...+ ..+-. .+|.+.|.+| |.|..+++..|. +||+|.+.++|.+|+.|||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 355778887665 23333 6799999999 999999999985 8999999999999999999999999
Q ss_pred eeEEeecCCC
Q 022058 283 PIRVSPSKTP 292 (303)
Q Consensus 283 ~l~v~~a~~~ 292 (303)
.|+|.++.|-
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=9.4e-10 Score=79.34 Aligned_cols=72 Identities=26% Similarity=0.312 Sum_probs=61.0
Q ss_pred CCCEEEEcCCC----CCCCH----HHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEE
Q 022058 115 VRRTVYVSDID----QNITE----ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186 (303)
Q Consensus 115 ~~~~l~V~nlp----~~~t~----~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~ 186 (303)
...+|+|.-.| .+.-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+||.|||..+.||.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 46777777665 22323 5689999999999999999865 8999999999999999999999999999
Q ss_pred EeecCC
Q 022058 187 VLPSKT 192 (303)
Q Consensus 187 v~~~~~ 192 (303)
|..+.+
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999754
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.3e-09 Score=83.62 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecC-HHHHHHHHH-hC--CcccCCeeEEEee
Q 022058 115 VRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALN-LG--GTMLGYYPVRVLP 189 (303)
Q Consensus 115 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~-~~~A~~Ai~-l~--g~~~~g~~i~v~~ 189 (303)
..+.|+|+||++. ++.++|+++|+.||+|..|.+..+.. .|||.|.+ .++|..|+. +| +..|.|..+.+..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 5788999999999 99999999999999999999988776 69999999 899999998 84 7888898888765
Q ss_pred c
Q 022058 190 S 190 (303)
Q Consensus 190 ~ 190 (303)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.2e-09 Score=82.29 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=64.5
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcC-HHHHHHHHH-h--CCceeCCeeeE
Q 022058 211 MCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAV-AESAILALN-C--SGMVLGSQPIR 285 (303)
Q Consensus 211 ~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~-~e~A~~Ai~-l--~g~~~~g~~l~ 285 (303)
..+..|+|+||+.. ++.++|+++|++| |.|.+|.+.++.. .|||.|.+ .++|..|+. | ++..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35688999999999 9999999999999 9999999999875 79999999 889999997 8 47889998888
Q ss_pred Eee
Q 022058 286 VSP 288 (303)
Q Consensus 286 v~~ 288 (303)
+..
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.2e-09 Score=77.76 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=63.5
Q ss_pred ccccceEEEcCCCCC-----CCH----HHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeC
Q 022058 210 EMCSRTVYCTNIDKK-----VPQ----AEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLG 280 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~-----~t~----~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~ 280 (303)
.++..||+|..++.. +-. .+|.+.|.+| |.|..+++..|+ +||+|.+.++|.+||.|||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeC
Confidence 346688999887643 322 5789999999 999999999985 99999999999999999999999
Q ss_pred CeeeEEeecCC
Q 022058 281 SQPIRVSPSKT 291 (303)
Q Consensus 281 g~~l~v~~a~~ 291 (303)
||.|+|.+..|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998643
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4.2e-09 Score=76.30 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=61.2
Q ss_pred CCCCEEEEcCCCCC------CCH---HHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCee
Q 022058 114 SVRRTVYVSDIDQN------ITE---ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYP 184 (303)
Q Consensus 114 ~~~~~l~V~nlp~~------~t~---~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~ 184 (303)
....||+|.-++.+ .++ .+|.+.|.+||.|..++++.+. +||+|.+.++|.+||.|||..+.||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 45788999877643 232 4688999999999999999875 99999999999999999999999999
Q ss_pred EEEeec
Q 022058 185 VRVLPS 190 (303)
Q Consensus 185 i~v~~~ 190 (303)
|+|.+.
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999874
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=1.1e-08 Score=87.06 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=58.1
Q ss_pred CHHHHHHHhhhhcCcceeEEEEecCC------CCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 022058 226 PQAEVKQFFEAACGGEVTRLRLLGDH------VHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSKT 291 (303)
Q Consensus 226 t~~~L~~~F~~~~~G~i~~v~i~~d~------~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~~ 291 (303)
.+++|++.|++| |.|.++.|.++. +.++|++||+|.+.++|.+|+. |||+.+.||.|.+.|+..
T Consensus 142 ~~~dl~~e~~~~--G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTT--SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHcc--CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 568999999999 999999998652 3789999999999999999999 999999999999999853
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.77 E-value=1.2e-08 Score=86.96 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=57.2
Q ss_pred CCHHHHHHHhhcCCceeEEEEeeCCC------CCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEeecC
Q 022058 128 ITEERLAGLFSSCGQVVDCRVCGDPH------SVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSK 191 (303)
Q Consensus 128 ~t~~~l~~~F~~~G~i~~~~i~~~~~------~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~~~~ 191 (303)
-.+++|++.|++||.|.++.++++.. .++|++||+|.+.++|.+|+. |||..+.||+|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35678999999999999999986543 268999999999999999999 99999999999999864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.8e-07 Score=66.88 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhc---CcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEee
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAAC---GGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSP 288 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~---~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~ 288 (303)
.++|-+.|||.++++..|+.+.+++- .|.+..+.+.+|.+ -|+|+|.+...|-+|.. |||.+|.|+.|++.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 48899999999999999999999871 37899999999975 69999999999988886 999999999999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.1e-07 Score=67.23 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=68.7
Q ss_pred hccCCCCCCEEEEcCCCCCCCHHHHHHHhhcC-----CceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCC
Q 022058 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSC-----GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGY 182 (303)
Q Consensus 109 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g 182 (303)
+.+.....++|-+-|||..++...|+.+..++ |.|..+.+..|.+ | |+|+|.+...|-+|.- |+|.+|.|
T Consensus 14 s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---G-Aivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 14 SRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---G-AIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp CCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---E-EEEECSCHHHHHHHHHHHSSEEETT
T ss_pred ccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---c-eEEEEccchhhHHHHhhcCCeeecC
Confidence 33344568999999999999999999999999 9999999998876 3 9999999999999986 99999999
Q ss_pred eeEEEee
Q 022058 183 YPVRVLP 189 (303)
Q Consensus 183 ~~i~v~~ 189 (303)
|.|+|.-
T Consensus 90 r~Lr~gT 96 (117)
T 2l9w_A 90 KVIRSGT 96 (117)
T ss_dssp EEEEEEC
T ss_pred eEEEecC
Confidence 9999974
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=3.1e-05 Score=56.72 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhc-----CCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCCeeEEEe
Q 022058 114 SVRRTVYVSDIDQNITEERLAGLFSS-----CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVL 188 (303)
Q Consensus 114 ~~~~~l~V~nlp~~~t~~~l~~~F~~-----~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g~~i~v~ 188 (303)
...++|.|.|||+.++++.|.-+|+. =|+|.++.... +-|+|+|.+.+.|++.++...+.+.+.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 36789999999999999999999986 25888887754 24999999999999999876779999999998
Q ss_pred ecCCCCCCCCCCCCCCcccccccccceEEEcCCCCCCC
Q 022058 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 226 (303)
...+ . ....|++++|++.++
T Consensus 80 P~~~-----------~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPP-----------R-------APARLLLQGLPPGTS 99 (104)
T ss_dssp ECCC-----------C-------CCCCCCCCSCCCCCC
T ss_pred cCCC-----------C-------CcceEeeecCCCCCC
Confidence 7421 1 225688888888764
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00016 Score=52.92 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=66.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhhh---hcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCCeeeEEee
Q 022058 212 CSRTVYCTNIDKKVPQAEVKQFFEA---ACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSP 288 (303)
Q Consensus 212 ~~~~l~V~nL~~~~t~~~L~~~F~~---~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g~~l~v~~ 288 (303)
..++|.|.|||+.++++.|.-+|+. -.||.|.++.... . -|+|+|.+.+.|++.++-..+.|.+..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~-----~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-C-----GGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T-----EEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-C-----cEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 3478999999999999999999997 3458999998876 2 69999999999999998667899999999988
Q ss_pred cCCCCCCC
Q 022058 289 SKTPVRPR 296 (303)
Q Consensus 289 a~~~~~~r 296 (303)
.-+....|
T Consensus 81 ~~~~~~~r 88 (104)
T 2dhx_A 81 APPRAPAR 88 (104)
T ss_dssp CCCCCCCC
T ss_pred CCCCCcce
Confidence 65544443
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=8e-05 Score=54.76 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=62.9
Q ss_pred cceEEEcCCCCCC-C----HHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEE
Q 022058 213 SRTVYCTNIDKKV-P----QAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRV 286 (303)
Q Consensus 213 ~~~l~V~nL~~~~-t----~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v 286 (303)
..+|+|.||+..+ . .+.++++|..| +++..-...+.=. -..|.|.+.++|.+|.. ||+..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~--~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY--DKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT--CSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh--CcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3789999998764 2 25789999999 8888887777743 58999999999999998 9999999999999
Q ss_pred eecCCC
Q 022058 287 SPSKTP 292 (303)
Q Consensus 287 ~~a~~~ 292 (303)
-|+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999754
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=0.00076 Score=49.52 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCC-C----HHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hCCcccCCeeEEEe
Q 022058 115 VRRTVYVSDIDQNI-T----EERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVL 188 (303)
Q Consensus 115 ~~~~l~V~nlp~~~-t----~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~g~~~~g~~i~v~ 188 (303)
...+|+|.||+.++ . .+.++++|..|+++.+....+.-. -.-|.|.+.++|.+|.. ||+..+.|+.++|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 45789999999764 3 256799999999998887776543 47999999999999998 99999999999999
Q ss_pred ecCC
Q 022058 189 PSKT 192 (303)
Q Consensus 189 ~~~~ 192 (303)
++++
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9863
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.0016 Score=49.06 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=59.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHhCCceeCC-eeeEEeec
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGS-QPIRVSPS 289 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l~g~~~~g-~~l~v~~a 289 (303)
..-|.|.+.|+.. ...|.+.|++| |.|.+.......+ +-.|.|.+..+|++|+..||..++| -.|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~--G~Iv~~~~~~~~N----WihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQY--GNILKHVMSNTGN----WMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTT--SCEEEEEECSSSS----EEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhh--CcEEEeccCCCCC----eEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 4678888999885 67788999998 9999988743333 9999999999999999999999984 77888875
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.0014 Score=49.48 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCcccCC-eeEEEeec
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGY-YPVRVLPS 190 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~~g-~~i~v~~~ 190 (303)
..+.|.|-+.|+.. ...+...|++||+|.+..... ....-.|.|.+..+|++||..||..+.| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 46789999999985 666777899999999887622 2348999999999999999999999984 66777764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.20 E-value=0.0013 Score=47.39 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=54.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC---C-CcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH---V-HSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~-~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
.+|.|++||+++|++++++.++.. +.+.......++ + ..-.-|+|.|.+.+++..-.+ ++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 468899999999999999999998 888887776664 2 234579999999999988888 9999884
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.16 E-value=0.0021 Score=46.25 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=54.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC----CceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
+.|.|++||+.+|++++.+.+.....+........+.+ .-.-|||.|.+.+++..... ++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 46899999999999999999999988776666554322 24679999999999999998 9998774
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.08 E-value=0.0014 Score=47.36 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=45.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-h
Q 022058 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-L 175 (303)
Q Consensus 115 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l 175 (303)
....++| ++|+++.-.||.++|+.||.| .|+.+-|. -|||.|.+++.|..|+. +
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhc
Confidence 3455666 899999999999999999954 47777654 59999999999999998 5
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.88 E-value=0.0024 Score=46.16 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=43.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-h
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-C 274 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l 274 (303)
..++| ++|+.+...||.++|++| |. ..|..+.|. .|||.|.+++.|..|+. +
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f--gg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF--GN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT--CS-CCCEEEETT-----EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc--CC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhc
Confidence 55666 999999999999999999 84 445566665 79999999999999998 5
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.71 E-value=0.0023 Score=46.39 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=44.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS 275 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~ 275 (303)
..++| ++|+.+...||.++|++| | -..|..+.|. .|||.|.+++.|..|+. +.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f--g-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF--G-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS--E-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc--C-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45566 999999999999999999 8 4456666665 79999999999999998 53
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.0026 Score=46.15 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=44.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC
Q 022058 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176 (303)
Q Consensus 118 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~ 176 (303)
.++| ++|+++.-.||.++|+.||. ..|+++-|. -|||.|.+++.|..|+. +.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 3555 99999999999999999994 457777654 59999999999999998 54
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.52 E-value=0.0025 Score=48.80 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=56.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeE-EEEecC--------------CC-CcccEEEEEEcCHHHHHHHHHhCCc
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTR-LRLLGD--------------HV-HSTRIAFVEFAVAESAILALNCSGM 277 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~-v~i~~d--------------~~-~~~g~afV~f~~~e~A~~Ai~l~g~ 277 (303)
.-|.|.+.|+... ..+.+.|++| |.|.. ....++ +. ....+..|+|.+..+|.+|+.-||.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~--G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEF--GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGG--SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred eEEEEEecCHHHH-HHHHHHHHhh--ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 4577888877664 5688899998 99876 222110 00 1245889999999999999999999
Q ss_pred eeCCeeeEEeecCC
Q 022058 278 VLGSQPIRVSPSKT 291 (303)
Q Consensus 278 ~~~g~~l~v~~a~~ 291 (303)
.|.|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999988753
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.81 E-value=0.0073 Score=43.77 Aligned_cols=65 Identities=9% Similarity=0.207 Sum_probs=49.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCC---C-CcccEEEEEEcCHHHHHHHHH-hCCceeC
Q 022058 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDH---V-HSTRIAFVEFAVAESAILALN-CSGMVLG 280 (303)
Q Consensus 214 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~---~-~~~g~afV~f~~~e~A~~Ai~-l~g~~~~ 280 (303)
-+|.|+.||+++|++++.+.+++. -.+.+......+ + ..-.-|+|.|.+.++...-.+ .+|+.+-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC--SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc--CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 578999999999999988888776 555444443332 1 123469999999999988887 9999883
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.77 E-value=0.012 Score=44.96 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=54.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEE-EEeeC----------CC-----CCceEEEEEecCHHHHHHHHHhCCcc
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDC-RVCGD----------PH-----SVLRFAFVEFADEHGARAALNLGGTM 179 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~----------~~-----~~~G~~fV~f~~~~~A~~Ai~l~g~~ 179 (303)
...|.|-+.|++.+..- -+.|++||.|.+- ....+ .. +....-.|+|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~~~V-I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQV-IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHHH-HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHHH-HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45688888877766554 5578999999662 11110 00 02357899999999999999999999
Q ss_pred cCCeeEEEeecC
Q 022058 180 LGYYPVRVLPSK 191 (303)
Q Consensus 180 ~~g~~i~v~~~~ 191 (303)
+.|..|-|.+.+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888753
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.55 E-value=0.0078 Score=56.21 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=48.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHHhCCccc
Q 022058 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTML 180 (303)
Q Consensus 111 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~l~g~~~ 180 (303)
|.....++|+|. .|..+++.+|.++|++||+|.++.+..+.+ -|+.|+|.+.+++..++..-+...
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 334457889998 799999999999999999999998876554 599999999999998876433333
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.32 E-value=0.019 Score=41.55 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCC----CceEEEEEecCHHHHHHHHH-hCCcccC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAALN-LGGTMLG 181 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----~~G~~fV~f~~~~~A~~Ai~-l~g~~~~ 181 (303)
+-.|.|+.||+.+||+++.+.++..-.+..........+ .-.-|||.|.+.++.....+ .+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 456999999999999999888876655433332221111 12459999999999999998 9987773
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.86 E-value=0.012 Score=55.06 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=45.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHHh
Q 022058 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNC 274 (303)
Q Consensus 210 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~l 274 (303)
.+..++|+|. .|...++.+|.++|++| |.|.++....+.| -||.|+|.+.+++..++..
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~--g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF--GPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG--SCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc--CCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4456899997 78899999999999999 9999999988776 5999999999998877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.14 E-value=3 Score=39.34 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=44.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hC
Q 022058 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CS 275 (303)
Q Consensus 213 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~ 275 (303)
...++|+ +|..+...+|.++|+.| |. .+|..+.|. .|||.|.+.+.|..+++ ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f--g~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF--GN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG--CC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc--CC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 3566666 99999999999999999 84 466666665 79999999999999997 64
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.90 E-value=2.6 Score=39.70 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=43.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEeeCCCCCceEEEEEecCHHHHHHHHH-hC
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~G~~fV~f~~~~~A~~Ai~-l~ 176 (303)
...++|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..++. +.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 3456666 99999999999999999954 56655443 69999999999999998 64
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=63.64 E-value=11 Score=30.01 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=40.3
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hcCCceeEEEEeeCCCCCceEEEEEecCH-HHHHHHHH
Q 022058 118 TVYVSDIDQ-N--------ITEERLAGLF--SSCGQVVDCRVCGDPHSVLRFAFVEFADE-HGARAALN 174 (303)
Q Consensus 118 ~l~V~nlp~-~--------~t~~~l~~~F--~~~G~i~~~~i~~~~~~~~G~~fV~f~~~-~~A~~Ai~ 174 (303)
.+.|-|+|. . .....|++.| +.|.++. ++.+..+.++.|++.|.|.+. ..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 466778876 2 3457899977 8999865 667777778899999999873 33334544
No 404
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=31.18 E-value=24 Score=17.84 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=10.6
Q ss_pred hHHHHHHHHhccC
Q 022058 35 TVQKLVDMFTKLN 47 (303)
Q Consensus 35 t~~~L~~~F~~~G 47 (303)
--.+++++|.++|
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 4567899999987
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.75 E-value=85 Score=24.77 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=32.9
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hhhcCcceeEEEEecCCCCcccEEEEEEcCH
Q 022058 215 TVYCTNIDK-K--------VPQAEVKQFF--EAACGGEVTRLRLLGDHVHSTRIAFVEFAVA 265 (303)
Q Consensus 215 ~l~V~nL~~-~--------~t~~~L~~~F--~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~ 265 (303)
...|.|+|. . ....+|++.| ..| .+ ..|..+.++...+|++.|.|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F--~p-~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF--NP-TRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC--CC-SEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCC--CC-ceeEecccCCCCceeEEEEecCC
Confidence 455667765 1 3457899977 898 44 44666666555788999999873
No 406
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.13 E-value=29 Score=29.17 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=24.2
Q ss_pred cccccchhhhHHHHHHHHhccCCcceeee
Q 022058 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFF 54 (303)
Q Consensus 26 ~~~nl~~~~t~~~L~~~F~~~G~v~~v~i 54 (303)
.|.||||..+..-|.++++..+.+..+.+
T Consensus 100 vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 100 VVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 69999999999999999997666655544
No 407
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.85 E-value=30 Score=24.70 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=10.8
Q ss_pred hhHHHHHHHHhccC
Q 022058 34 FTVQKLVDMFTKLN 47 (303)
Q Consensus 34 ~t~~~L~~~F~~~G 47 (303)
.+-..|+++|.+||
T Consensus 88 ~DI~~ire~fqKYG 101 (101)
T 4aj5_1 88 MDIMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcC
Confidence 35567999999998
No 408
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.84 E-value=37 Score=29.00 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=24.6
Q ss_pred CcccccchhhhHHHHHHHHhccCCcceeee
Q 022058 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFF 54 (303)
Q Consensus 25 ~~~~nl~~~~t~~~L~~~F~~~G~v~~v~i 54 (303)
..|.||||..+..-|.++++....+..+.+
T Consensus 117 ~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp EEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred EEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 579999999999999999987555555555
No 409
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.59 E-value=2e+02 Score=20.44 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCC-ceeCCeeeEEeecCCCCCCCC
Q 022058 220 NIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSG-MVLGSQPIRVSPSKTPVRPRV 297 (303)
Q Consensus 220 nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g-~~~~g~~l~v~~a~~~~~~r~ 297 (303)
.++..+.-++|+.-....| |.-.++..... -..|-..+.++-.+|++ |+- ....+-+|.+...+.......
T Consensus 23 ~f~RPv~f~eL~~Kv~~~f-Gq~ldL~y~n~------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~~~~~~~~ 95 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAF-GQSMDLHYTNN------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVINGSTQATNL 95 (103)
T ss_dssp EEESSCCHHHHHHHHHHHH-SSCEEEEECSS------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECCCCSCCSC
T ss_pred eccCCccHHHHHHHHHHHh-CCeeeEEEecc------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCCCCccccC
Confidence 4567788888888777766 88777776633 37899999999999998 532 222333445555444444455
Q ss_pred CCCC
Q 022058 298 TRPG 301 (303)
Q Consensus 298 ~r~~ 301 (303)
+.+|
T Consensus 96 ~~~~ 99 (103)
T 2cu1_A 96 EPSG 99 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5554
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.82 E-value=1.8e+02 Score=19.99 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=38.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhhhcCcceeEEEEecCCCCcccEEEEEEcCHHHHHH
Q 022058 216 VYCTNIDKKVPQAEVKQFFEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAIL 270 (303)
Q Consensus 216 l~V~nL~~~~t~~~L~~~F~~~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~A~~ 270 (303)
-|+--.+...+..+|++.++.+|+-.|..|..+.-+. ..--|+|++..-.+|..
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~KKA~V~L~~~~~a~d 78 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEKKAYVKLKPEYSASE 78 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCEEEEEEECTTSCHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-CceEEEEEcCCCCcHHH
Confidence 3444568889999999999997644777887655432 12259999988766654
No 411
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.07 E-value=67 Score=27.22 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEe
Q 022058 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149 (303)
Q Consensus 116 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~ 149 (303)
...+.|+|||+.++...|..++.. +.+....++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 346889999999999999999987 666544443
No 412
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.01 E-value=1.1e+02 Score=19.91 Aligned_cols=59 Identities=10% Similarity=0.252 Sum_probs=36.1
Q ss_pred CCCHHHHHHHhhhhcCc----ceeEEEEecCCCCcccEEEEEEcCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 022058 224 KVPQAEVKQFFEAACGG----EVTRLRLLGDHVHSTRIAFVEFAVAESAILALN-CSGMVLGSQPIRVSPSK 290 (303)
Q Consensus 224 ~~t~~~L~~~F~~~~~G----~i~~v~i~~d~~~~~g~afV~f~~~e~A~~Ai~-l~g~~~~g~~l~v~~a~ 290 (303)
.+...+|..++..-. | .|=.+.|..+ |.||+..... |..++. |++..+.|+.+.+..++
T Consensus 12 ~~~p~~ivg~i~~~~-gi~~~~IG~I~i~d~------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKID-GVSADDIGIITIMDN------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTST-TCCGGGEEEEEECSS------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHcc-CCChhhccEEEEeCC------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 456677777777541 2 3445666443 7899987643 556676 88999999999988764
No 413
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.67 E-value=38 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=26.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCceeEEEEe
Q 022058 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149 (303)
Q Consensus 117 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~ 149 (303)
....|+|||+.++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865556555444
Done!