Query 022059
Match_columns 303
No_of_seqs 137 out of 190
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656 DNA methyltransferase 100.0 4.7E-91 1E-95 670.6 19.4 284 1-300 4-297 (445)
2 cd00167 SANT 'SWI3, ADA2, N-Co 97.8 1.2E-05 2.6E-10 53.4 2.2 43 129-172 1-44 (45)
3 smart00717 SANT SANT SWI3, AD 97.6 4.1E-05 9E-10 51.3 2.1 45 128-173 2-47 (49)
4 PF00249 Myb_DNA-binding: Myb- 97.6 2.6E-05 5.5E-10 54.9 1.0 44 129-172 3-47 (48)
5 PF13921 Myb_DNA-bind_6: Myb-l 97.3 9.5E-05 2.1E-09 53.7 1.1 41 130-171 1-41 (60)
6 PLN03212 Transcription repress 96.5 0.0052 1.1E-07 58.1 6.3 60 121-181 68-131 (249)
7 PLN03091 hypothetical protein; 96.5 0.004 8.7E-08 63.0 5.6 63 119-182 55-121 (459)
8 PF05499 DMAP1: DNA methyltran 94.0 0.022 4.7E-07 51.6 1.1 25 222-247 1-25 (176)
9 PLN03212 Transcription repress 85.0 0.58 1.3E-05 44.5 2.2 52 124-175 22-74 (249)
10 PF13837 Myb_DNA-bind_4: Myb/S 81.3 0.42 9.2E-06 36.6 -0.3 55 128-182 2-73 (90)
11 PLN03091 hypothetical protein; 67.1 2.8 6E-05 43.1 1.3 51 123-173 10-61 (459)
12 COG1168 MalY Bifunctional PLP- 66.5 5 0.00011 40.6 2.9 26 129-156 174-199 (388)
13 PF13873 Myb_DNA-bind_5: Myb/S 60.4 16 0.00034 27.5 4.1 47 127-176 2-48 (78)
14 PF03993 DUF349: Domain of Unk 57.8 17 0.00038 27.0 3.9 19 163-181 1-19 (77)
15 PF08963 DUF1878: Protein of u 55.4 6.1 0.00013 33.7 1.1 26 121-146 29-54 (113)
16 COG5114 Histone acetyltransfer 51.9 6.4 0.00014 39.3 0.9 47 125-172 61-108 (432)
17 KOG0048 Transcription factor, 44.7 25 0.00054 32.5 3.5 53 127-180 62-115 (238)
18 PF14597 Lactamase_B_5: Metall 39.4 22 0.00048 33.0 2.3 74 66-171 6-79 (199)
19 cd03007 PDI_a_ERp29_N PDIa fam 38.8 30 0.00065 29.2 2.8 29 139-167 68-110 (116)
20 TIGR01557 myb_SHAQKYF myb-like 37.3 26 0.00057 26.0 2.0 41 129-169 5-50 (57)
21 PRK08068 transaminase; Reviewe 37.0 33 0.00072 32.9 3.2 28 129-157 183-210 (389)
22 KOG0457 Histone acetyltransfer 36.5 22 0.00047 36.6 1.9 47 125-172 70-117 (438)
23 KOG0048 Transcription factor, 33.9 31 0.00067 32.0 2.3 34 128-161 10-44 (238)
24 cd03769 SR_IS607_transposase_l 33.0 53 0.0012 27.6 3.4 54 130-183 74-130 (134)
25 PRK14841 undecaprenyl pyrophos 32.8 34 0.00074 32.2 2.4 79 110-205 50-139 (233)
26 KOG0049 Transcription factor, 32.3 21 0.00046 38.8 1.1 47 127-173 305-354 (939)
27 KOG1853 LIS1-interacting prote 30.6 2.3E+02 0.0049 27.9 7.6 57 200-263 143-207 (333)
28 PRK09147 succinyldiaminopimela 30.2 53 0.0012 31.6 3.4 28 129-157 182-209 (396)
29 PRK07681 aspartate aminotransf 30.2 54 0.0012 31.7 3.4 28 129-157 182-209 (399)
30 PRK14842 undecaprenyl pyrophos 29.9 40 0.00087 31.9 2.4 39 110-155 55-104 (241)
31 COG3623 SgaU Putative L-xylulo 29.5 1E+02 0.0022 30.0 5.0 68 112-179 33-104 (287)
32 PF03776 MinE: Septum formatio 29.2 88 0.0019 24.0 3.8 34 147-180 9-45 (70)
33 PRK06620 hypothetical protein; 28.9 1E+02 0.0022 28.0 4.7 41 129-169 96-136 (214)
34 PRK14838 undecaprenyl pyrophos 28.8 47 0.001 31.5 2.6 39 110-155 57-104 (242)
35 PRK06290 aspartate aminotransf 28.1 58 0.0013 32.1 3.3 28 129-157 195-222 (410)
36 TIGR00055 uppS undecaprenyl di 27.9 50 0.0011 31.1 2.6 39 110-155 46-95 (226)
37 KOG1923 Rac1 GTPase effector F 27.4 1.2E+02 0.0026 33.7 5.6 119 106-235 108-242 (830)
38 PRK09257 aromatic amino acid a 26.8 68 0.0015 30.9 3.4 28 129-157 188-215 (396)
39 PRK07590 L,L-diaminopimelate a 26.5 69 0.0015 31.1 3.4 28 129-157 192-219 (409)
40 PF04889 Cwf_Cwc_15: Cwf15/Cwc 26.3 48 0.001 31.4 2.2 30 218-247 143-172 (244)
41 PRK06855 aminotransferase; Val 25.8 65 0.0014 31.9 3.2 27 129-156 187-213 (433)
42 cd01992 PP-ATPase N-terminal d 25.7 2.3E+02 0.0049 24.1 6.2 34 132-165 44-79 (185)
43 KOG3584 cAMP response element 25.1 90 0.002 31.0 3.9 39 198-236 301-341 (348)
44 TIGR03540 DapC_direct LL-diami 24.9 74 0.0016 30.4 3.3 28 129-157 180-207 (383)
45 cd00475 CIS_IPPS Cis (Z)-Isopr 24.6 63 0.0014 30.2 2.7 39 110-155 47-96 (221)
46 PF07357 DRAT: Dinitrogenase r 24.5 44 0.00096 32.3 1.7 54 82-143 100-160 (262)
47 PRK14827 undecaprenyl pyrophos 24.2 63 0.0014 31.6 2.7 39 110-155 114-163 (296)
48 PRK07366 succinyldiaminopimela 24.2 78 0.0017 30.3 3.3 28 129-157 181-208 (388)
49 cd06257 DnaJ DnaJ domain or J- 24.0 82 0.0018 21.5 2.6 19 158-176 10-28 (55)
50 PF03786 UxuA: D-mannonate deh 23.9 65 0.0014 32.3 2.7 53 127-179 39-97 (351)
51 PRK14829 undecaprenyl pyrophos 23.9 66 0.0014 30.4 2.7 79 110-205 61-150 (243)
52 PHA02550 32 single-stranded DN 23.5 96 0.0021 30.6 3.7 63 101-181 187-249 (304)
53 PRK05942 aspartate aminotransf 23.4 83 0.0018 30.3 3.3 27 129-156 186-212 (394)
54 COG5259 RSC8 RSC chromatin rem 23.4 36 0.00078 35.6 0.9 46 126-172 278-323 (531)
55 PF03826 OAR: OAR domain; Int 22.7 31 0.00068 21.3 0.2 9 293-301 5-13 (21)
56 TIGR03542 DAPAT_plant LL-diami 22.6 86 0.0019 30.4 3.3 28 129-157 189-216 (402)
57 PRK03906 mannonate dehydratase 22.5 82 0.0018 31.8 3.2 28 127-154 37-64 (385)
58 PTZ00376 aspartate aminotransf 22.4 85 0.0018 30.5 3.2 28 129-157 192-219 (404)
59 PTZ00349 dehydrodolichyl dipho 22.4 72 0.0016 31.7 2.7 39 110-155 66-118 (322)
60 KOG3955 Heparan sulfate 6-O-su 22.3 86 0.0019 31.2 3.2 47 133-181 277-338 (361)
61 PRK14840 undecaprenyl pyrophos 22.2 68 0.0015 30.6 2.4 39 110-155 69-118 (250)
62 PRK14837 undecaprenyl pyrophos 21.0 71 0.0015 30.1 2.3 39 110-155 53-102 (230)
63 KOG1602 Cis-prenyltransferase 21.0 89 0.0019 30.4 2.9 78 110-204 83-174 (271)
64 PRK14830 undecaprenyl pyrophos 20.5 78 0.0017 30.1 2.4 79 110-205 69-158 (251)
65 cd01174 ribokinase Ribokinase 20.4 2E+02 0.0043 26.0 5.0 49 106-154 171-219 (292)
66 PRK14831 undecaprenyl pyrophos 20.2 1E+02 0.0022 29.4 3.1 39 110-155 67-116 (249)
67 PRK14833 undecaprenyl pyrophos 20.2 85 0.0018 29.6 2.6 39 110-155 51-100 (233)
68 PLN02231 alanine transaminase 20.1 98 0.0021 32.1 3.3 28 129-157 287-314 (534)
69 TIGR00695 uxuA mannonate dehyd 20.1 99 0.0021 31.5 3.2 52 127-179 37-95 (394)
No 1
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.7e-91 Score=670.64 Aligned_cols=284 Identities=46% Similarity=0.716 Sum_probs=243.5
Q ss_pred CchhhhhCCCCCCC-CCc-ccccCCCCCCCCCCCCcccHHHHHhhCC-CCCCCccccccccccCCCCC-CCCCceecccc
Q 022059 1 MDAKDILGIPKTQL-PTT-QEKKSRPQKEPQRKPDGISREVYALTGG-LAPLMPSIDVSQLKKRPPSD-EKITWQWLPFT 76 (303)
Q Consensus 1 ~DvrDIL~lp~~~~-~~~-~~Kk~~~~~~~~krp~Gm~REvyaLlG~-~~P~~pt~~~~~~K~K~~~~-k~~~W~w~pFt 76 (303)
+||||||+||+.+. .+. ++++.+++....+||+|||||||||||+ .||++|+++. .||+++..+ ++++|.|+||+
T Consensus 4 aDirDIL~l~~~t~~~~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~n~pPL~ps~~~-~fkek~l~s~K~~~W~w~pFt 82 (445)
T KOG2656|consen 4 ADIRDILELPQKTRSLTNKQKSKPRSSTESRRRPEGMSREVYALLGENAPPLLPSDTN-NFKEKRLGSKKVRPWKWVPFT 82 (445)
T ss_pred ccHHHHhcCCCCCCCCcccccccCCCchhccCCCcchhHHHHHHhcCCCCCccccccc-hhhhccCccccCCCceeeccC
Confidence 59999999998432 332 2233344455678999999999999996 6999998864 488877665 77899999999
Q ss_pred cccCCCCcEEeeeeeccCCCCCCCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCC
Q 022059 77 NSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRF 156 (303)
Q Consensus 77 N~AR~DgL~L~HWvr~~~~~~~~~~Y~FAKFN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy 156 (303)
||||+|+++||||||+.+ ..+||||||||++|+||.||+|||+.||.|+.||++|||||||||++||||||||+|||
T Consensus 83 n~aRkD~~~l~HWvr~~d---~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRy 159 (445)
T KOG2656|consen 83 NSARKDDATLHHWVRVGD---TPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRY 159 (445)
T ss_pred CccccCCceEEeeeeccC---CCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeecc
Confidence 999999999999999954 47899999999999999999999999999999999999999999999999999999998
Q ss_pred C-----CCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC-CCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 022059 157 P-----SSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVK-DPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEA 230 (303)
Q Consensus 157 ~-----~~RtvEDLKeRYYsV~~kl~~~R~~~~~~~~~~~l~~-~~fd~~~E~~RK~~L~~Ll~RT~eqi~EEe~Ll~El 230 (303)
+ .+|||||||+|||+|||+|+.+|++++.+ |++ +.||++||++||+||++||+||++||+||++|++|+
T Consensus 160 d~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sd-----llk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~ 234 (445)
T KOG2656|consen 160 DNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSD-----LLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVEL 234 (445)
T ss_pred chhhccccccHHHHHHHHHHHHHHHHHccCCCchh-----hhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5 47999999999999999999999987544 233 799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCccCCCCCccccccccCCCCCCCCCCCCCCcccccCCccccccchhhhhhhc
Q 022059 231 KRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLASLR 300 (303)
Q Consensus 231 krIe~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lr 300 (303)
||||+++ ++...+-+++ +...+.+++.+ +..+++|.++...+... ++.|.++++.|++.||+|
T Consensus 235 KkiEark-ke~~~~~~~l----~rlld~ad~~i-~~~stS~~~~~~~~~~~-a~kt~~k~~~a~v~a~~~ 297 (445)
T KOG2656|consen 235 KKIEARK-KERLAERQDL----LRLLDSADGDI-TQYSTSPGMSSLENALL-AKKTRQKKHEANVPASPR 297 (445)
T ss_pred HHHHHHh-hhhhhhhHHH----HHhhhcccccc-cccccChhHHHHHHHHh-hhhhhcccccccCccccc
Confidence 9999954 5544443332 45556778884 89999998887777776 999999999999999886
No 2
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.81 E-value=1.2e-05 Score=53.37 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fD-LRw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
.||.+|...|+.+|+.|+ .+|-.|+..++. ||.++++.|||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence 499999999999999999 999999988865 9999999999875
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.58 E-value=4.1e-05 Score=51.35 Aligned_cols=45 Identities=31% Similarity=0.609 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fD-LRw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
..||.+|...|..+++.|+ .+|-.|+..++ .||..+++.|||.+-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999998886 899999999999764
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.57 E-value=2.6e-05 Score=54.92 Aligned_cols=44 Identities=32% Similarity=0.669 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHhhhcCcc-eEEEecCCCCCCCHHHHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLR-w~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
.||.||.+.|.++++.|+-. |-.|++.++..||..+++.|||..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 69999999999999999999 999999999999999999999964
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.28 E-value=9.5e-05 Score=53.70 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 130 WTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 130 WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
||.||.+.|+.|++.|+-.|--|+..+ +.||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-CcCCHHHHHHHHHH
Confidence 999999999999999999999999998 48999999999999
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.55 E-value=0.0052 Score=58.09 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=53.4
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 022059 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 181 (303)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~R~ 181 (303)
|..||. ...||.||-+.|+++.+.|+=+|..|+..+ +.||--++|.|||++.++.+..+.
T Consensus 68 W~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-pGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 68 WMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-PGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-CCCCHHHHHHHHHHHHhHHHHhcC
Confidence 777774 468999999999999999999999999876 579999999999999999887664
No 7
>PLN03091 hypothetical protein; Provisional
Probab=96.52 E-value=0.004 Score=63.02 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=54.8
Q ss_pred HHHHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Q 022059 119 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAP 182 (303)
Q Consensus 119 eEY~~~L~----d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~R~~ 182 (303)
+=|..||. ...||+||-..|++|.+.|+=||..|+..+ ..||--++|.|||.+.++.++.+.-
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-PGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34677774 457999999999999999999999999765 6899999999999999999888764
No 8
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.03 E-value=0.022 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCC
Q 022059 222 KDAEVLAEAKRITDSRMASRAAEEPE 247 (303)
Q Consensus 222 EEe~Ll~ElkrIe~~r~~~~~~~e~~ 247 (303)
||++|+.|||+||+ |+.++.....+
T Consensus 1 EEe~Li~ELrKIE~-RKkEREKK~qD 25 (176)
T PF05499_consen 1 EEEMLIAELRKIEA-RKKEREKKTQD 25 (176)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 79999999999999 66777776655
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=85.04 E-value=0.58 Score=44.54 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=44.9
Q ss_pred hcCCCCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 022059 124 YLTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 124 ~L~d~~WTkeETDyLFdLC~~fD-LRw~VI~DRy~~~RtvEDLKeRYYsV~~k 175 (303)
-|+-..||.||-..|..++++|+ -+|-.|+-+.+..||--+.++||...-+-
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhch
Confidence 34556799999999999999998 58999998877789999999999987643
No 10
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=81.34 E-value=0.42 Score=36.61 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHhhh--cCcce------------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHHcCC
Q 022059 128 PMWTKEETDQLFELCER--FDLRF------------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 182 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~--fDLRw------------~VI~DRy---~~~RtvEDLKeRYYsV~~kl~~~R~~ 182 (303)
..||.+||..|+++..+ ++++| -.|++.. +..||.++++.++=.+.+.+-..+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999 66654 3333332 45899999999999999999988764
No 11
>PLN03091 hypothetical protein; Provisional
Probab=67.13 E-value=2.8 Score=43.09 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=43.1
Q ss_pred hhcCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 123 KYLTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 123 ~~L~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
+-|+-..||.||-..|..+.++|+- .|-.|+-..+..||--+.++||+.+-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 4456667999999999999999996 59999877667899999999997654
No 12
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=66.54 E-value=5 Score=40.57 Aligned_cols=26 Identities=50% Similarity=0.912 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy 156 (303)
-||+||-..|-+||++||+| ||.|=.
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 49999999999999999996 777765
No 13
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=60.41 E-value=16 Score=27.54 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 176 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl 176 (303)
.+.||.+|+..|.+|++++ ..||.++....-|..+-..-.-.|+..|
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~---~~il~~k~~~~~~~~~k~~~W~~I~~~l 48 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH---KDILENKFSDSVSNKEKRKAWEEIAEEL 48 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh---HHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999884 4455554433333333333333333333
No 14
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=57.78 E-value=17 Score=27.04 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 022059 163 EELKDRYYGVSRAILIARA 181 (303)
Q Consensus 163 EDLKeRYYsV~~kl~~~R~ 181 (303)
|+|..||..+|..+...|.
T Consensus 1 d~Lw~~F~~a~~~~~~~~~ 19 (77)
T PF03993_consen 1 DELWKRFRAACDAFFDRRK 19 (77)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5799999999999998875
No 15
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=55.36 E-value=6.1 Score=33.70 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhhhcC
Q 022059 121 YEKYLTDPMWTKEETDQLFELCERFD 146 (303)
Q Consensus 121 Y~~~L~d~~WTkeETDyLFdLC~~fD 146 (303)
|...+-..+||++|++-.++||++++
T Consensus 29 Fy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 29 FYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44444557899999999999999853
No 16
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=51.85 E-value=6.4 Score=39.32 Aligned_cols=47 Identities=30% Similarity=0.450 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
+-+++|+-.|--.|.+-|..-+| .|-=|+|-.+ .|+-||.|+.||..
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 34789999999999999999998 6988888666 99999999999864
No 17
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=44.73 E-value=25 Score=32.54 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH-HHHHHHHc
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV-SRAILIAR 180 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV-~~kl~~~R 180 (303)
-..||.||.+-|+.|-..|+-||-+|+=+ -+.||--++|--.=+- ++++.+..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~-LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGR-LPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhh-CCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999999854 4579999998776444 45555544
No 18
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=39.45 E-value=22 Score=32.99 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=45.3
Q ss_pred CCCCceecccccccCCCCcEEeeeeeccCCCCCCCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc
Q 022059 66 EKITWQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF 145 (303)
Q Consensus 66 k~~~W~w~pFtN~AR~DgL~L~HWvr~~~~~~~~~~Y~FAKFN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~f 145 (303)
++-=|.|.-| |++|+=++.=+-|++.. =|+=|+-|.|+.+....+. .-=
T Consensus 6 rpdl~~Ws~f-n~~~n~dfng~~~~~p~-------------GnilIDP~~ls~~~~~~l~-----------------a~g 54 (199)
T PF14597_consen 6 RPDLFSWSWF-NEARNLDFNGHAWRRPE-------------GNILIDPPPLSAHDWKHLD-----------------ALG 54 (199)
T ss_dssp STTEEEEEEE-ETTTTEEEEEEEE--TT---------------EEES-----HHHHHHHH-----------------HTT
T ss_pred CCccchhhhc-ChhhccCceeEEEEcCC-------------CCEEecCccccHHHHHHHH-----------------hcC
Confidence 4445888888 66788777778898862 2677889999999986543 234
Q ss_pred CcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 146 DLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 146 DLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
..+|||+.-| +..|.-++..++||.
T Consensus 55 gv~~IvLTn~-dHvR~A~~ya~~~~a 79 (199)
T PF14597_consen 55 GVAWIVLTNR-DHVRAAEDYAEQTGA 79 (199)
T ss_dssp --SEEE-SSG-GG-TTHHHHHHHS--
T ss_pred CceEEEEeCC-hhHhHHHHHHHHhCC
Confidence 7899999866 568999999999983
No 19
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=38.81 E-value=30 Score=29.16 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=22.2
Q ss_pred HHHhhhcCcc---eEEE-----ec-----CCCCC-CCHHHHHH
Q 022059 139 FELCERFDLR---FIVI-----AD-----RFPSS-RTVEELKD 167 (303)
Q Consensus 139 FdLC~~fDLR---w~VI-----~D-----Ry~~~-RtvEDLKe 167 (303)
-+||.+|+++ |+.| .+ .|.+. ||.++|..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~ 110 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQR 110 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHH
Confidence 4899999997 7755 22 47775 99999974
No 20
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=37.26 E-value=26 Score=26.04 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHhhhcCc-ce---EEEecCCCCCC-CHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDL-RF---IVIADRFPSSR-TVEELKDRY 169 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDL-Rw---~VI~DRy~~~R-tvEDLKeRY 169 (303)
.||.||-....+=++.|+. .| --|.+-+...+ |.+.++.++
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 5999999999999999998 89 66777777666 999888765
No 21
>PRK08068 transaminase; Reviewed
Probab=37.03 E-value=33 Score=32.90 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.|+.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 183 ~~s~~~~~~l~~la~~~~~-~ii~Deay~ 210 (389)
T PRK08068 183 VATKAFFEETVAFAKKHNI-GVVHDFAYG 210 (389)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEehhhh
Confidence 4999999999999999998 777777663
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=36.49 E-value=22 Score=36.63 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
+-+++||-+|--.|.+-|+.|++ .|-=|+|-.+ .+|=||-|+.|+..
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHH
Confidence 56789999999999999999998 6888877666 89999999999864
No 23
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=33.91 E-value=31 Score=31.95 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHhhhcCcc-eEEEecCCCCCCC
Q 022059 128 PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRT 161 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLR-w~VI~DRy~~~Rt 161 (303)
..||.||=+-|.++.+.|+-+ |..|..+.+-.|+
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~ 44 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRC 44 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCcc
Confidence 579999999999999999988 9999988764443
No 24
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=33.02 E-value=53 Score=27.59 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHhhhcCcceEEEecCCCC---CCCHHHHHHHHHHHHHHHHHHcCCC
Q 022059 130 WTKEETDQLFELCERFDLRFIVIADRFPS---SRTVEELKDRYYGVSRAILIARAPS 183 (303)
Q Consensus 130 WTkeETDyLFdLC~~fDLRw~VI~DRy~~---~RtvEDLKeRYYsV~~kl~~~R~~~ 183 (303)
+++.--|++..+|+..+.+++++.+-++. ..-+..+-.=.-+++++++..|.+.
T Consensus 74 l~R~~~d~~~~~l~~~gv~l~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 130 (134)
T cd03769 74 LARFGFELLEELFKAYGVEIVVINQEENEELEQELVEDLIEIITSFSARLYGKRSHK 130 (134)
T ss_pred HHHhhHHHHHHHHHHCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 66766778888999999999999987752 3677888888999999999988865
No 25
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.78 E-value=34 Score=32.19 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhh-----------cCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~-----------fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~ 178 (303)
.|+++.||-|-|. =+.+|.++||+|+++ .+.|.-||-|+= +=-++|++..-.+..
T Consensus 50 ~lTvYaFS~eN~~-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~---~Lp~~~~~~i~~~e~---- 115 (233)
T PRK14841 50 YLTAFSFSTENWK-------RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKE---GLPEKVLKKWQEVEE---- 115 (233)
T ss_pred EEEEEeeeHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChh---hCCHHHHHHHHHHHH----
Confidence 4677788887764 368999999999864 478888887762 222455544332222
Q ss_pred HcCCCCCCCCCCCccCCCCChHHHHHH
Q 022059 179 ARAPSPTDVSGHPLVKDPYNVSQEVER 205 (303)
Q Consensus 179 ~R~~~~~~~~~~~l~~~~fd~~~E~~R 205 (303)
.-.. .+. .+-.+-++|+-..|+.+
T Consensus 116 ~T~~-~~~--~~Lnia~~Yggr~EI~~ 139 (233)
T PRK14841 116 KTKE-FDR--MTLVIAFNYGGRREILD 139 (233)
T ss_pred HhcC-CCC--cEEEEEecCCCHHHHHH
Confidence 2111 111 11112379999988854
No 26
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=32.30 E-value=21 Score=38.83 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCC---CCCCCHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRF---PSSRTVEELKDRYYGVS 173 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy---~~~RtvEDLKeRYYsV~ 173 (303)
...||.||-+-|..|++.--.-=+|=|||. -..||--.|--|||.+-
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~L 354 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTL 354 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheecc
Confidence 468999999999999999999999999985 36899999999999764
No 27
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=30.61 E-value=2.3e+02 Score=27.91 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH--------HHhhhhccCCCCCccCCCCCccccccc
Q 022059 200 SQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDS--------RMASRAAEEPEMPVASHVGSESADRAV 263 (303)
Q Consensus 200 ~~E~~RK~~L~~Ll~RT~eqi~EEe~Ll~ElkrIe~~--------r~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (303)
.|=++|..+|+. |..|-+.|++++.|+..- -...|+.|-+-.+..+...++..|.+|
T Consensus 143 nqAIErnAfLES-------ELdEke~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss~~~er~dtav 207 (333)
T KOG1853|consen 143 NQAIERNAFLES-------ELDEKEVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSSVEAERTDTAV 207 (333)
T ss_pred HHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccchhhhhcchhh
Confidence 477888888885 445667777777776442 112233344444444555555556665
No 28
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=30.23 E-value=53 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||.++...|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~l~~~a~~~~~-~ii~De~y~ 209 (396)
T PRK09147 182 VLPLDDWKKLFALSDRYGF-VIASDECYS 209 (396)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEeecccc
Confidence 5999999999999999987 555555554
No 29
>PRK07681 aspartate aminotransferase; Provisional
Probab=30.19 E-value=54 Score=31.69 Aligned_cols=28 Identities=7% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
-|+.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~i~~~a~~~~~-~iI~De~y~ 209 (399)
T PRK07681 182 MAHEDFFKEVIAFAKKHNI-IVVHDFAYA 209 (399)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEeccch
Confidence 4999999999999999998 777777664
No 30
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.88 E-value=40 Score=31.94 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~f-----------DLRw~VI~DR 155 (303)
.|+++.||-|-|. =+.+|.+.||+|+.+| +.|.-||-|+
T Consensus 55 ~vTvYaFS~eN~~-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~ 104 (241)
T PRK14842 55 NISLYAFSTENWK-------RPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSR 104 (241)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4677888887774 3689999999998765 6777788766
No 31
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=29.54 E-value=1e+02 Score=29.96 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=52.2
Q ss_pred ccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEE----ecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022059 112 DVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVI----ADRFPSSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 112 ~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~fDLRw~VI----~DRy~~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
+..++|-+|=+.-|.--+||++|--.|-.+|.+.+.|.+-+ |-||+-.--=+-+.++=+.|..|-+..
T Consensus 33 DFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~L 104 (287)
T COG3623 33 DFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQL 104 (287)
T ss_pred CeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566777777777778999999999999999999999988 678873323355667777777766554
No 32
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=29.22 E-value=88 Score=24.01 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=27.9
Q ss_pred cceEEEecCCCC-C--CCHHHHHHHHHHHHHHHHHHc
Q 022059 147 LRFIVIADRFPS-S--RTVEELKDRYYGVSRAILIAR 180 (303)
Q Consensus 147 LRw~VI~DRy~~-~--RtvEDLKeRYYsV~~kl~~~R 180 (303)
|+.++++||-+. + -.++.||.=-..|.++++..-
T Consensus 9 Lk~iL~~dR~~~~~~~~~l~~lk~eil~viskYv~i~ 45 (70)
T PF03776_consen 9 LKLILAHDRGGLSPQPDYLEQLKKEILEVISKYVEID 45 (70)
T ss_dssp EEEEEEEECCSC-CTTSSHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhheecC
Confidence 788999999863 4 699999999999999999764
No 33
>PRK06620 hypothetical protein; Validated
Probab=28.93 E-value=1e+02 Score=28.01 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRY 169 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRY 169 (303)
.|..++--|||+.|++=+-..++-+|+.+...++.||+.|.
T Consensus 96 ~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 96 NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 57777888999999999977777788877776789999887
No 34
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.81 E-value=47 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=31.1
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh---------hcCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE---------RFDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~---------~fDLRw~VI~DR 155 (303)
.|+++.||-|-|. =+.+|.++||+|+. +++.|.-||-|+
T Consensus 57 ~lT~YaFS~EN~k-------R~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~ 104 (242)
T PRK14838 57 FLTLYTFSTENWN-------RPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDI 104 (242)
T ss_pred EEEEEeechhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh
Confidence 4677788887774 36899999999976 478888888876
No 35
>PRK06290 aspartate aminotransferase; Provisional
Probab=28.14 E-value=58 Score=32.08 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
-|+.+|-..|.++|+++++ |+|+-|-|.
T Consensus 195 v~s~e~l~~l~~la~~~~~-~iI~DEaY~ 222 (410)
T PRK06290 195 VATKEFYEEVVDFAKENNI-IVVQDAAYA 222 (410)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEecchh
Confidence 4999999999999999998 777777664
No 36
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=27.94 E-value=50 Score=31.05 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=30.8
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~-----------~fDLRw~VI~DR 155 (303)
.++++.||-|-|. =+++|.+.||+|.+ +.+.|.-||-|+
T Consensus 46 ~lT~yaFStEN~~-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 95 (226)
T TIGR00055 46 CLTLYAFSTENWK-------RPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDL 95 (226)
T ss_pred EEEEEEeehhhcC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4667788877764 36899999999955 678999999877
No 37
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=27.40 E-value=1.2e+02 Score=33.70 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=68.3
Q ss_pred cccCCCccccCCHHHHHhhcCCCC---------CCHHHHHHHHHHhhhcCcceE--EEecCCCCCCCHHHHH--HHHHHH
Q 022059 106 KYNKSVDVVKYTDEEYEKYLTDPM---------WTKEETDQLFELCERFDLRFI--VIADRFPSSRTVEELK--DRYYGV 172 (303)
Q Consensus 106 KFN~kv~ip~YtdeEY~~~L~d~~---------WTkeETDyLFdLC~~fDLRw~--VI~DRy~~~RtvEDLK--eRYYsV 172 (303)
-|-+|.+ +.+|.-+|++||.-.- -.-.=||-+||+-+-++.-|. +|.+| .-+++|.- +|--.|
T Consensus 108 n~rvhlQ-ye~t~lgld~yi~~~~e~ese~l~~Q~~sy~dn~~dv~all~ds~~k~~~le~---v~~~~~~isher~~~v 183 (830)
T KOG1923|consen 108 NFRVHLQ-YEATHLGLDKYIDAPPENESEELQRQFQSYTDNLTDVRALLRDSFQKTFVLEF---VETPADQISHERLQAV 183 (830)
T ss_pred hhHHHhh-hHHHHHhhhhhhhcchhhhhHHHHHHHHHHhhhHHHHHHhcccchhhhHHHHh---hcchhhhhhHHHHHHH
Confidence 3444443 3677777888875321 122247899999998887775 45554 34566666 777777
Q ss_pred HHHHHHHcCCCCCCCCCCCccCCCCChHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 022059 173 SRAILIARAPSPTDVSGHPLVKDPYNVSQEV---ERKRALSMVLSQTKHQERKDAEVLAEAKRITD 235 (303)
Q Consensus 173 ~~kl~~~R~~~~~~~~~~~l~~~~fd~~~E~---~RK~~L~~Ll~RT~eqi~EEe~Ll~ElkrIe~ 235 (303)
....+..-++- +.+ .+.-++++|- .||.+++-+=.=++--+.-|++|-.+.+.++.
T Consensus 184 ~~~~~s~~A~l--~~~-----s~sl~~er~~~~~~~~~~~dels~m~k~~~~~e~~lk~~~~~l~~ 242 (830)
T KOG1923|consen 184 EMAQASAPAPL--PGA-----SSSLNKEREPQSYQRKALLDELSCMQKLSIEKERSLKAIARLLET 242 (830)
T ss_pred HHHHhcCcccC--chh-----hhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhccC
Confidence 77777633221 110 1234555555 67777766544444444455566555555543
No 38
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=26.76 E-value=68 Score=30.95 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||.++-..|.++|+++|+ |+|+-|-|.
T Consensus 188 ~~s~~~~~~l~~~a~~~~~-~ii~De~Y~ 215 (396)
T PRK09257 188 DLTPEQWDELAELLKERGL-IPFLDIAYQ 215 (396)
T ss_pred CCCHHHHHHHHHHHHhCCc-EEEEecccc
Confidence 4999999999999999988 566666665
No 39
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=26.55 E-value=69 Score=31.13 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||.++-..|.++|+++|+ |+|+-|-|.
T Consensus 192 ~~s~~~~~~l~~~a~~~~~-~iI~De~Y~ 219 (409)
T PRK07590 192 VLTKEQLKAWVDYAKENGS-LILFDAAYE 219 (409)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEEccch
Confidence 5999999999999999987 666666664
No 40
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=26.27 E-value=48 Score=31.44 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 022059 218 HQERKDAEVLAEAKRITDSRMASRAAEEPE 247 (303)
Q Consensus 218 eqi~EEe~Ll~ElkrIe~~r~~~~~~~e~~ 247 (303)
+...|+++||.||.+|-+-|..++...|.+
T Consensus 143 ddeDd~~~Ll~ELekIKkER~ee~~~~e~~ 172 (244)
T PF04889_consen 143 DDEDDTAALLRELEKIKKERAEEKARKEEE 172 (244)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677899999999988887776665544
No 41
>PRK06855 aminotransferase; Validated
Probab=25.77 E-value=65 Score=31.87 Aligned_cols=27 Identities=22% Similarity=0.637 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy 156 (303)
.||.++-..|.++|++||+ |||.-|-|
T Consensus 187 ~~s~~~~~~l~~~a~~~~~-~II~De~Y 213 (433)
T PRK06855 187 VYPKEILREIVDIAREYDL-FIICDEIY 213 (433)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEEeccc
Confidence 5999999999999999974 44444445
No 42
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=25.73 E-value=2.3e+02 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcCcceEEE--ecCCCCCCCHHHH
Q 022059 132 KEETDQLFELCERFDLRFIVI--ADRFPSSRTVEEL 165 (303)
Q Consensus 132 keETDyLFdLC~~fDLRw~VI--~DRy~~~RtvEDL 165 (303)
.++.+++-++|+.+++.+.++ ..-.....+++++
T Consensus 44 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 44 DEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 589999999999999999998 3222234556654
No 43
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=25.06 E-value=90 Score=31.01 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=31.9
Q ss_pred ChHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 022059 198 NVSQEVERK--RALSMVLSQTKHQERKDAEVLAEAKRITDS 236 (303)
Q Consensus 198 d~~~E~~RK--~~L~~Ll~RT~eqi~EEe~Ll~ElkrIe~~ 236 (303)
-+.+|.+|| +|+.=|-+|-.=-+..-..|++|||-+.+.
T Consensus 301 EAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 301 EAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred HHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 356888885 699999999887777778999999988764
No 44
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=24.87 E-value=74 Score=30.35 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.|+.++-..|.++|+++|+ |+|+-|-|.
T Consensus 180 ~~~~~~~~~i~~~a~~~~~-~ii~De~y~ 207 (383)
T TIGR03540 180 VAPLKFFKELVEFAKEYNI-IVCHDNAYS 207 (383)
T ss_pred cCCHHHHHHHHHHHHHcCE-EEEEecchh
Confidence 5999999999999999987 666666663
No 45
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=24.64 E-value=63 Score=30.15 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~f-----------DLRw~VI~DR 155 (303)
.++++.||-|-|. =+.+|.+.||+|++.| +.|.-||-|+
T Consensus 47 ~lTvyaFS~eN~~-------R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~ 96 (221)
T cd00475 47 EVTLYAFSTENWK-------RPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDL 96 (221)
T ss_pred EEEEEeechhhhC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 4667778877664 3678999999998866 7888889877
No 46
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=24.46 E-value=44 Score=32.31 Aligned_cols=54 Identities=20% Similarity=0.549 Sum_probs=38.6
Q ss_pred CCcEEeeeeeccCCCCCCCCCccccccCCCccccCCHHHHHhhcCC-------CCCCHHHHHHHHHHhh
Q 022059 82 DNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTD-------PMWTKEETDQLFELCE 143 (303)
Q Consensus 82 DgL~L~HWvr~~~~~~~~~~Y~FAKFN~kv~ip~YtdeEY~~~L~d-------~~WTkeETDyLFdLC~ 143 (303)
.|++|+.||-.-=|. +..|-+. .|..+..+.|..|+.+ ++=-...-|.|++.|+
T Consensus 100 EGAVLKGWVESRFGL-------~PtfHk~-~i~~~~s~a~~~Y~~ekm~~~~~tNaI~~QLDLLYeycQ 160 (262)
T PF07357_consen 100 EGAVLKGWVESRFGL-------LPTFHKE-PIRRFHSEAWARYVEEKMSGRFHTNAIESQLDLLYEYCQ 160 (262)
T ss_pred hhhhhhhhhhhccCc-------CcccccC-cCCCCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 499999999874443 2345443 4889999999999974 2333456778888886
No 47
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.21 E-value=63 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~-----------~fDLRw~VI~DR 155 (303)
.|+++.||-|-|. =+.+|.+.||+|++ +.+.|.-||.|+
T Consensus 114 ~lTvYaFStEN~k-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~iG~~ 163 (296)
T PRK14827 114 WLSLYAFSTENWK-------RSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSR 163 (296)
T ss_pred EEEEeeecchhhc-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEech
Confidence 4667778777774 36889999999965 457888888876
No 48
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=24.19 E-value=78 Score=30.32 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 181 ~~s~~~~~~l~~~a~~~~~-~ii~De~Y~ 208 (388)
T PRK07366 181 IAPLSFFQEAVAFCQQHDL-VLVHDFPYV 208 (388)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEecchh
Confidence 5999999999999999984 666555553
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=23.95 E-value=82 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 022059 158 SSRTVEELKDRYYGVSRAI 176 (303)
Q Consensus 158 ~~RtvEDLKeRYYsV~~kl 176 (303)
..-|.++||.+|+..++.+
T Consensus 10 ~~~~~~~ik~~y~~l~~~~ 28 (55)
T cd06257 10 PDASDEEIKKAYRKLALKY 28 (55)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3568899999999998866
No 50
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=23.92 E-value=65 Score=32.34 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCC------CCCCHHHHHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFP------SSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~------~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
..-|++++-..+-+.|++++|+|-||-+-=. ..-.-++.-+-|=..-+.|-+.
T Consensus 39 g~~W~~e~i~~~k~~ie~~GL~~~vIEsvpv~e~IklG~~~RD~~Ieny~~~Irnlg~~ 97 (351)
T PF03786_consen 39 GEVWDYEEIRALKERIEAAGLTLSVIESVPVHEDIKLGLPGRDEEIENYKQTIRNLGKA 97 (351)
T ss_dssp TS---HHHHHHHHHHHHCTT-EEEEEES----HHHHCT-TTHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCChHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999974311 1233345556666666666664
No 51
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.89 E-value=66 Score=30.44 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=47.5
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~-----------~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~ 178 (303)
.|+++.||-|-|. =+.+|.+.||+|++ +++.|.-||.|+ .+--++|++.. .++.+
T Consensus 61 ~vTvYaFS~eN~k-------R~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~iG~~---~~Lp~~~~~~i----~~~e~ 126 (243)
T PRK14829 61 YLSLYTFSTENWK-------RSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRR---PRLWKSVIDEL----EAAEE 126 (243)
T ss_pred EEEEeeecchhhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEech---hhCCHHHHHHH----HHHHH
Confidence 4667777777664 36789999999965 568889999877 34445665432 22222
Q ss_pred HcCCCCCCCCCCCccCCCCChHHHHHH
Q 022059 179 ARAPSPTDVSGHPLVKDPYNVSQEVER 205 (303)
Q Consensus 179 ~R~~~~~~~~~~~l~~~~fd~~~E~~R 205 (303)
.-... +.. .--+-.+|+-..|+.+
T Consensus 127 ~T~~~-~~~--~Lnia~~Y~gr~EI~~ 150 (243)
T PRK14829 127 LTKNN-TTM--DLVFCVNYGGRAEIAD 150 (243)
T ss_pred HhccC-Cce--EEEEEecCCCHHHHHH
Confidence 22111 111 1112279999998854
No 52
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=23.53 E-value=96 Score=30.63 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=47.0
Q ss_pred CCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHHc
Q 022059 101 DYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIAR 180 (303)
Q Consensus 101 ~Y~FAKFN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~R 180 (303)
.|.=.+|-....|+.+.||+|++.|- . +++||.=++-.|-| .|.|+|+.||=.|.-.=+..+
T Consensus 187 NYD~s~f~~~s~l~~i~De~~~~~iw----e-----------~~hdL~e~~a~~~F---Ksye~L~~rf~kVmG~s~~~~ 248 (304)
T PHA02550 187 NYDDSKFAAPSPLPNIDDEAFQKEIW----E-----------QMHDLSEFVAPDKF---KSYEELETKFNKVMGTSAVGG 248 (304)
T ss_pred CcccccccccccCCCCCcHHHHHHHH----H-----------hcccHHHHhCHHhc---CCHHHHHHHHHHHhccccccc
Confidence 35557887888899999999987662 1 56777777777665 689999999999985444434
Q ss_pred C
Q 022059 181 A 181 (303)
Q Consensus 181 ~ 181 (303)
+
T Consensus 249 a 249 (304)
T PHA02550 249 A 249 (304)
T ss_pred c
Confidence 3
No 53
>PRK05942 aspartate aminotransferase; Provisional
Probab=23.43 E-value=83 Score=30.34 Aligned_cols=27 Identities=7% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy 156 (303)
.|+.++-..|.++|+++++ |+|+-|-|
T Consensus 186 ~~s~~~~~~i~~~a~~~~~-~iI~De~y 212 (394)
T PRK05942 186 TAPREFFEEIVAFARKYEI-MLVHDLCY 212 (394)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEeccc
Confidence 4999999999999999998 77777666
No 54
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=23.38 E-value=36 Score=35.61 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
.|..||++|+-.|.+=.++|+=-|-=|++--+ .+|+|+--.+|-.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 46689999999999999999999988887766 89999999888764
No 55
>PF03826 OAR: OAR domain; InterPro: IPR003654 This 14 amino acid motif has been identified within the C-terminal region of several Paired-like homeodomain (HD) containing proteins [, ]. It was named OAR domain after the initials of otp, aristaless, and rax []. Although it has been proposed that this domain could be important for transactivation and be involved in protein-protein interactions or DNA binding [, ], is function is not yet known. Some proteins known to contain a OAR domain include human RIEG, defects in which are the cause of Rieger syndrome []; human OG12X and Mus musculus (Mouse) Og12x, whose function is not yet known []; vertebrate Rax, which plays a role in the proliferation and/or differentiation of retinal cells []; Drosophila DRX, which appears to be important in brain development []; and human SHOX, encoded by the short stature homeobox-containing gene. Defects or lack of this protein are the cause of short stature associated with the Turner syndrome [].; GO: 0003677 DNA binding, 0007275 multicellular organismal development, 0005634 nucleus
Probab=22.66 E-value=31 Score=21.34 Aligned_cols=9 Identities=44% Similarity=0.837 Sum_probs=7.2
Q ss_pred hhhhhhhcc
Q 022059 293 ASTLASLRM 301 (303)
Q Consensus 293 ~~~~~~lrm 301 (303)
.|.||+|||
T Consensus 5 ~sSIa~LRl 13 (21)
T PF03826_consen 5 SSSIAALRL 13 (21)
T ss_pred hhhHHHHHH
Confidence 467899998
No 56
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=22.59 E-value=86 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.|++++-..|.++|+++|+ |+|+-|-|.
T Consensus 189 ~~s~~~~~~l~~~a~~~~~-~iI~De~y~ 216 (402)
T TIGR03542 189 VLTKEQLKELVDYANEHGS-LILFDAAYS 216 (402)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEEchhh
Confidence 5999999999999999986 777766664
No 57
>PRK03906 mannonate dehydratase; Provisional
Probab=22.54 E-value=82 Score=31.76 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEec
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIAD 154 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~D 154 (303)
..-|+.++-..+-+.|+.++|+|-||-.
T Consensus 37 g~~W~~~~i~~~~~~ie~~Gl~~~vvEs 64 (385)
T PRK03906 37 GEVWPVEEILARKAEIEAAGLEWSVVES 64 (385)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3569999999999999999999999953
No 58
>PTZ00376 aspartate aminotransferase; Provisional
Probab=22.42 E-value=85 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||.++-..|.++|+++|+ |+|.-|-|.
T Consensus 192 ~~s~~~~~~l~~~a~~~~~-~ii~De~Y~ 219 (404)
T PTZ00376 192 DPTEEQWKEIADVMKRKNL-IPFFDMAYQ 219 (404)
T ss_pred CCCHHHHHHHHHHHHhCCc-EEEEehhhc
Confidence 5999999999999999998 777766675
No 59
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=22.39 E-value=72 Score=31.72 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHh--------------hhcCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELC--------------ERFDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC--------------~~fDLRw~VI~DR 155 (303)
.|+++.||-|-|. =+.+|.++||+|. .+++.|.-||-||
T Consensus 66 ~lTlYAFStENwk-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~ 118 (322)
T PTZ00349 66 ILSVFSFSLLNYN-------RSPEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNL 118 (322)
T ss_pred EEEEEEeehhhhC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeCh
Confidence 4678888888775 3789999999876 3567888888876
No 60
>KOG3955 consensus Heparan sulfate 6-O-sulfotransferase [Cell wall/membrane/envelope biogenesis; Carbohydrate transport and metabolism]
Probab=22.27 E-value=86 Score=31.15 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhcCcceEEEecCCCC------------CCCHH---HHHHHHHHHHHHHHHHcC
Q 022059 133 EETDQLFELCERFDLRFIVIADRFPS------------SRTVE---ELKDRYYGVSRAILIARA 181 (303)
Q Consensus 133 eETDyLFdLC~~fDLRw~VI~DRy~~------------~RtvE---DLKeRYYsV~~kl~~~R~ 181 (303)
..|.|||+ +.|||.||-=.=-|.+ -|++| ||-..-|.+++-|++.|-
T Consensus 277 rktQylFE--rTFnlkfirPFmqynstraggvevdedtirrieelndLdmQlydyakdLfqqry 338 (361)
T KOG3955|consen 277 RKTQYLFE--RTFNLKFIRPFMQYNSTRAGGVEVDEDTIRRIEELNDLDMQLYDYAKDLFQQRY 338 (361)
T ss_pred hhhhHHHh--hhccceeeccceeecccccccEEecchhhhhHHHhcchhhhHHHHHHHHHHHHh
Confidence 46999998 8999999865444432 37776 567899999999998875
No 61
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.18 E-value=68 Score=30.62 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=30.5
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~f-----------DLRw~VI~DR 155 (303)
.++++.||-|-|. =+++|.+.||+|.++| +.|.-||-|+
T Consensus 69 ~lTvYaFS~EN~~-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 118 (250)
T PRK14840 69 VLTLFAFSTENFS-------RSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDL 118 (250)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4677788887774 3689999999887764 7888888876
No 62
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.01 E-value=71 Score=30.14 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.9
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~-----------~fDLRw~VI~DR 155 (303)
.++++.||-|-|. =+++|.++||+|.+ +.+.|.-||-|+
T Consensus 53 ~lT~YaFS~EN~~-------Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 102 (230)
T PRK14837 53 YLSLYVFSTENWN-------RTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDI 102 (230)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcCh
Confidence 4667788877764 36899999999886 457888888776
No 63
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=20.98 E-value=89 Score=30.41 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=50.1
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh--------------hcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE--------------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~--------------~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~k 175 (303)
-|+++.|+-|-+. =+++|.|-||+|.+ +|+.|+.||-|.= . |-++.-....+
T Consensus 83 ~vT~fAFSieNFk-------Rs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdls---l----L~~~l~k~i~~ 148 (271)
T KOG1602|consen 83 EVTVFAFSIENFK-------RSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLS---L----LPESLRKAIKK 148 (271)
T ss_pred EEEEEEEehhhhC-------CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchh---h----CCHHHHHHHHH
Confidence 3566777777664 48999999999876 4999999998762 1 22333344555
Q ss_pred HHHHcCCCCCCCCCCCccCCCCChHHHHH
Q 022059 176 ILIARAPSPTDVSGHPLVKDPYNVSQEVE 204 (303)
Q Consensus 176 l~~~R~~~~~~~~~~~l~~~~fd~~~E~~ 204 (303)
+.++=..+. . .+-.+-++|...+|+-
T Consensus 149 ieE~Tknn~-~--~~L~vcf~Ytsr~EI~ 174 (271)
T KOG1602|consen 149 IEEATKNNT-R--LILNVCFAYTSRDEIL 174 (271)
T ss_pred HHHHhhcCC-c--eEEEEEeccCcHHHHH
Confidence 555533221 1 1222348999999887
No 64
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.47 E-value=78 Score=30.11 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=46.3
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~-----------~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~ 178 (303)
.|+++.||-|-+. =+.+|.+.||+|++ +++.|.-||.|+ .+=-++|++. ..++.+
T Consensus 69 ~vTvYaFS~eN~~-------R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~viG~~---~~Lp~~~~~~----~~~~e~ 134 (251)
T PRK14830 69 VLTLYAFSTENWK-------RPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDT---DRLPEHTLRA----LEKAIE 134 (251)
T ss_pred EEEEEEEehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCh---hhCCHHHHHH----HHHHHH
Confidence 4667778877775 47889999998775 478899999876 1112444443 222222
Q ss_pred HcCCCCCCCCCCCccCCCCChHHHHHH
Q 022059 179 ARAPSPTDVSGHPLVKDPYNVSQEVER 205 (303)
Q Consensus 179 ~R~~~~~~~~~~~l~~~~fd~~~E~~R 205 (303)
. ....+.. +--+-.+|+-..|+.+
T Consensus 135 ~-T~~~~~~--~Lnia~~YggR~EI~~ 158 (251)
T PRK14830 135 K-TKNNTGL--ILNFALNYGGRAEIVS 158 (251)
T ss_pred H-ccCCCce--EEEEEecCCCHHHHHH
Confidence 1 1111110 1112279999988854
No 65
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=20.39 E-value=2e+02 Score=25.95 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=39.4
Q ss_pred cccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEec
Q 022059 106 KYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIAD 154 (303)
Q Consensus 106 KFN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~fDLRw~VI~D 154 (303)
.+-..+++...+++|...++....++.++...+...+.+++.+++||.+
T Consensus 171 ~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 219 (292)
T cd01174 171 ELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTL 219 (292)
T ss_pred HHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3345678888999999888877777777777788888888999999975
No 66
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.24 E-value=1e+02 Score=29.35 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhh-----------hcCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~-----------~fDLRw~VI~DR 155 (303)
.|+++.||-|-|. =+.+|.+.||+|++ +++.|.-||.|+
T Consensus 67 ~vT~yaFS~eN~k-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~iG~~ 116 (249)
T PRK14831 67 ALTAYAFSTENWS-------RPLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDL 116 (249)
T ss_pred EEEEeecchhhhC-------cCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEech
Confidence 4677788877774 36789999999864 578888889876
No 67
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.18 E-value=85 Score=29.58 Aligned_cols=39 Identities=26% Similarity=0.566 Sum_probs=29.9
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~f-----------DLRw~VI~DR 155 (303)
.++++.||-|-|. =+.+|.+.||+|..+| +.|.-||.|+
T Consensus 51 ~lTvyaFS~eN~~-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~ 100 (233)
T PRK14833 51 CLTLYAFSTENWK-------RPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDL 100 (233)
T ss_pred EEEEeecchhhcC-------cCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCh
Confidence 4667788877764 3679999999998764 7778888765
No 68
>PLN02231 alanine transaminase
Probab=20.07 E-value=98 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.476 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||.++-..|.++|++||+ |+|.-|-|.
T Consensus 287 vls~e~l~~Iv~~a~~~~l-~lI~DEvY~ 314 (534)
T PLN02231 287 VLAEENQRDIVEFCKQEGL-VLLADEVYQ 314 (534)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEEEccch
Confidence 4999999999999999987 455444553
No 69
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=20.05 E-value=99 Score=31.49 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCC-------CCCCHHHHHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFP-------SSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~-------~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
..-|+.++-..+-+.|+.++|+|-||-. .+ ..-.-++.-+.|=..-|.|.++
T Consensus 37 gevW~~~~i~~~k~~ie~~GL~~~vvEs-~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~ 95 (394)
T TIGR00695 37 GEVWEKEEIRKRKEYIESAGLHWSVVES-VPVHEAIKTGTGNYGRWIENYKQTLRNLAQC 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEeC-CCccHHHHcCCCcHHHHHHHHHHHHHHHHHc
Confidence 3469999999999999999999999954 22 1334455666777777777765
Done!