Query 022059
Match_columns 303
No_of_seqs 137 out of 190
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iej_A DNA methyltransferase 1 100.0 2.2E-44 7.6E-49 289.0 5.3 86 99-184 2-91 (93)
2 3hm5_A DNA methyltransferase 1 100.0 4.8E-41 1.6E-45 269.8 5.1 84 99-182 2-89 (93)
3 1x58_A Hypothetical protein 49 97.6 1.7E-05 6E-10 59.3 1.8 48 128-175 9-58 (62)
4 3osg_A MYB21; transcription-DN 97.5 7.3E-05 2.5E-09 61.3 3.7 50 127-177 62-111 (126)
5 2cu7_A KIAA1915 protein; nucle 97.3 9.8E-05 3.3E-09 55.3 2.4 54 125-179 7-60 (72)
6 2k9n_A MYB24; R2R3 domain, DNA 97.1 0.00022 7.4E-09 56.9 2.5 52 127-179 53-104 (107)
7 1guu_A C-MYB, MYB proto-oncoge 97.0 0.00034 1.1E-08 48.9 2.7 47 126-173 2-49 (52)
8 2din_A Cell division cycle 5-l 97.0 0.0004 1.4E-08 50.9 3.0 54 126-181 8-61 (66)
9 3sjm_A Telomeric repeat-bindin 97.0 0.00029 9.9E-09 52.1 2.1 47 128-174 12-60 (64)
10 1w0t_A Telomeric repeat bindin 96.9 0.00031 1.1E-08 49.5 1.7 47 128-174 3-51 (53)
11 2ltp_A Nuclear receptor corepr 95.9 0.00015 5.2E-09 56.7 0.0 51 125-176 14-64 (89)
12 1gv2_A C-MYB, MYB proto-oncoge 96.8 0.00043 1.5E-08 54.5 2.2 48 127-175 56-103 (105)
13 2llk_A Cyclin-D-binding MYB-li 96.7 0.00034 1.2E-08 53.4 0.6 44 127-172 23-66 (73)
14 1ity_A TRF1; helix-turn-helix, 96.6 0.00074 2.5E-08 50.0 2.2 47 128-174 11-59 (69)
15 1gvd_A MYB proto-oncogene prot 96.6 0.00092 3.1E-08 46.7 2.5 46 126-172 2-48 (52)
16 1x41_A Transcriptional adaptor 96.6 0.00063 2.2E-08 49.2 1.6 47 125-172 6-53 (60)
17 2ckx_A NGTRF1, telomere bindin 96.6 0.00087 3E-08 52.2 2.3 49 129-177 2-54 (83)
18 2aje_A Telomere repeat-binding 96.6 0.00094 3.2E-08 54.3 2.6 48 127-174 13-64 (105)
19 2elk_A SPCC24B10.08C protein; 96.6 0.00078 2.7E-08 48.6 1.9 47 126-172 8-55 (58)
20 2d9a_A B-MYB, MYB-related prot 96.6 0.0008 2.7E-08 48.3 1.8 47 125-172 6-53 (60)
21 2yum_A ZZZ3 protein, zinc fing 96.5 0.00055 1.9E-08 51.3 0.8 53 126-179 7-65 (75)
22 2cqr_A RSGI RUH-043, DNAJ homo 96.4 0.0015 5.2E-08 49.7 2.7 47 127-174 18-68 (73)
23 3zqc_A MYB3; transcription-DNA 96.4 0.0015 5E-08 53.8 2.8 56 121-177 44-103 (131)
24 1h8a_C AMV V-MYB, MYB transfor 96.2 0.0011 3.7E-08 54.2 0.7 54 121-175 69-126 (128)
25 2cjj_A Radialis; plant develop 96.0 0.0033 1.1E-07 50.0 2.8 51 128-179 9-63 (93)
26 2juh_A Telomere binding protei 96.0 0.0016 5.5E-08 54.2 1.0 48 128-175 18-69 (121)
27 2dim_A Cell division cycle 5-l 96.0 0.0026 9E-08 47.0 1.9 48 125-173 7-55 (70)
28 2roh_A RTBP1, telomere binding 96.0 0.0018 6E-08 54.1 1.0 49 127-175 31-83 (122)
29 2yus_A SWI/SNF-related matrix- 95.9 0.0022 7.7E-08 49.3 1.2 44 127-171 18-61 (79)
30 1h89_C C-MYB, MYB proto-oncoge 95.7 0.0029 9.8E-08 53.4 1.2 54 121-175 100-157 (159)
31 1wgx_A KIAA1903 protein; MYB D 95.4 0.0052 1.8E-07 47.1 1.6 45 127-172 8-56 (73)
32 2eqr_A N-COR1, N-COR, nuclear 95.3 0.0057 2E-07 44.4 1.5 43 128-171 13-55 (61)
33 2cqq_A RSGI RUH-037, DNAJ homo 94.7 0.0082 2.8E-07 45.5 1.0 44 127-172 8-55 (72)
34 3osg_A MYB21; transcription-DN 94.5 0.016 5.3E-07 47.3 2.3 47 126-173 10-56 (126)
35 1gv2_A C-MYB, MYB proto-oncoge 94.1 0.023 8E-07 44.5 2.5 47 125-172 2-49 (105)
36 2k9n_A MYB24; R2R3 domain, DNA 93.2 0.03 1E-06 44.3 1.6 43 129-172 3-46 (107)
37 1h8a_C AMV V-MYB, MYB transfor 92.1 0.054 1.8E-06 44.0 1.8 45 127-172 27-72 (128)
38 1ug2_A 2610100B20RIK gene prod 92.0 0.082 2.8E-06 42.4 2.7 48 129-177 35-85 (95)
39 3zqc_A MYB3; transcription-DNA 91.6 0.1 3.6E-06 42.6 3.0 45 128-173 3-48 (131)
40 4eef_G F-HB80.4, designed hema 91.4 0.042 1.4E-06 42.3 0.3 41 128-169 21-65 (74)
41 1h89_C C-MYB, MYB proto-oncoge 90.6 0.13 4.4E-06 43.1 2.7 45 127-172 58-103 (159)
42 2yqk_A Arginine-glutamic acid 85.3 0.41 1.4E-05 34.8 2.2 46 125-170 7-52 (63)
43 2lr8_A CAsp8-associated protei 85.1 0.18 6.2E-06 38.4 0.0 44 129-174 16-62 (70)
44 2iw5_B Protein corest, REST co 79.9 0.48 1.6E-05 43.5 0.8 44 127-171 133-176 (235)
45 2crg_A Metastasis associated p 76.2 1.5 5.1E-05 32.6 2.5 46 128-174 9-54 (70)
46 1ign_A Protein (RAP1); RAP1,ye 71.6 2.1 7E-05 39.5 2.7 46 128-174 9-60 (246)
47 4b4c_A Chromodomain-helicase-D 69.7 2.9 9.9E-05 36.0 3.1 44 128-172 8-55 (211)
48 2ebi_A DNA binding protein GT- 69.5 1.2 4.1E-05 33.7 0.5 56 127-182 4-72 (86)
49 4a69_C Nuclear receptor corepr 53.8 7 0.00024 30.5 2.4 43 128-171 44-86 (94)
50 1ofc_X ISWI protein; nuclear p 52.8 12 0.0004 35.3 4.2 59 113-173 91-155 (304)
51 2y9y_A Imitation switch protei 33.1 26 0.00088 34.0 3.1 60 113-173 104-169 (374)
52 4d9a_A 2-pyrone-4,6-dicarbaxyl 29.7 70 0.0024 28.7 5.3 63 101-165 40-112 (303)
53 3ku7_A MINE, cell division top 28.9 79 0.0027 24.2 4.7 32 147-178 23-54 (80)
54 3sgv_B Undecaprenyl pyrophosph 28.6 18 0.00063 33.2 1.2 39 110-155 64-113 (253)
55 2kxo_A Cell division topologic 25.3 63 0.0021 25.4 3.6 33 147-179 22-57 (95)
56 2xag_B REST corepressor 1; ami 23.9 12 0.00041 37.4 -0.9 43 128-171 381-423 (482)
57 2vg0_A Short-chain Z-isoprenyl 23.9 22 0.00076 31.8 0.9 38 111-155 51-97 (227)
58 3ugs_B Undecaprenyl pyrophosph 23.5 20 0.00068 32.4 0.4 39 110-155 53-102 (225)
59 3k7y_A Aspartate aminotransfer 20.6 72 0.0025 29.8 3.7 28 129-157 190-217 (405)
60 1qgu_B Protein (nitrogenase mo 20.1 5.1E+02 0.017 25.3 9.8 87 132-225 230-345 (519)
No 1
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=100.00 E-value=2.2e-44 Score=288.96 Aligned_cols=86 Identities=50% Similarity=0.914 Sum_probs=69.6
Q ss_pred CCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 022059 99 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 174 (303)
Q Consensus 99 ~~~Y~FAKFN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~----~~RtvEDLKeRYYsV~~ 174 (303)
+++|+|||||++|+||+||+|||++||++++||+|||||||+||++|||||+||+|||. ..|||||||+|||+||+
T Consensus 2 ~~~y~FakfN~~v~ip~yt~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp ------------CCCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCcCCCcccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999997 37999999999999999
Q ss_pred HHHHHcCCCC
Q 022059 175 AILIARAPSP 184 (303)
Q Consensus 175 kl~~~R~~~~ 184 (303)
+|+++|+++.
T Consensus 82 ~l~~~r~~~~ 91 (93)
T 4iej_A 82 KLANVRAVPG 91 (93)
T ss_dssp HHHHHTC---
T ss_pred HHHHhhCCCC
Confidence 9999999763
No 2
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-41 Score=269.83 Aligned_cols=84 Identities=51% Similarity=0.940 Sum_probs=68.4
Q ss_pred CCCCccccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 022059 99 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 174 (303)
Q Consensus 99 ~~~Y~FAKFN~kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~----~~RtvEDLKeRYYsV~~ 174 (303)
+++|+|||||++++||+||+|||++||++++||+|||||||+||++|||||+||+|||+ +.|||||||+|||+||+
T Consensus 2 ~~~y~fakfN~~~~i~~yt~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp -------------CCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCchhccccCCCCccCHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999996 47999999999999999
Q ss_pred HHHHHcCC
Q 022059 175 AILIARAP 182 (303)
Q Consensus 175 kl~~~R~~ 182 (303)
+|+++|+.
T Consensus 82 ~l~~~r~~ 89 (93)
T 3hm5_A 82 KLANVRAV 89 (93)
T ss_dssp HHHHHTC-
T ss_pred HHHHhcCC
Confidence 99999964
No 3
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.61 E-value=1.7e-05 Score=59.27 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCC--CCCCHHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDLRFIVIADRFP--SSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLRw~VI~DRy~--~~RtvEDLKeRYYsV~~k 175 (303)
..||.||+.+|++++++|+-.|--|..-|. ..||-=|||+||+.++++
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 469999999999999999999999998665 689999999999988763
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.46 E-value=7.3e-05 Score=61.34 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~ 177 (303)
...||.||...|++++++|+-+|-.|+..++ .||-.++|.||+.+.+++-
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFP-GRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 3479999999999999999999999997664 7999999999999998864
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.29 E-value=9.8e-05 Score=55.29 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=47.4
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
+....||.||-..|+++.+.|+-+|-.|+..+ +.||-.++|.||+...++.+..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999865 4699999999999998887654
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.08 E-value=0.00022 Score=56.85 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.+++...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFL-KNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHC-CCCCHHHHHHHHHHHHhhHHHh
Confidence 457999999999999999999999999765 5799999999999999987654
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.02 E-value=0.00034 Score=48.87 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
+...||.||-..|.++++.|+- +|-.|+..++ .||-.+.++||+.+-
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4467999999999999999998 9999998875 699999999998764
No 8
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0004 Score=50.90 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 022059 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 181 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~R~ 181 (303)
....||.||-..|+++.+.|+-+|-.|+. +.. ||-.+.|+||....+..+..-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 34579999999999999999999999999 664 9999999999999888876543
No 9
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.97 E-value=0.00029 Score=52.14 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCC-CCCCHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDL-RFIVIADRFP-SSRTVEELKDRYYGVSR 174 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~-~~RtvEDLKeRYYsV~~ 174 (303)
..||.||.+.|.+++++|+- +|-.|+.-++ ..||--++++||..+.+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 46999999999999999995 8999998876 57999999999987654
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.90 E-value=0.00031 Score=49.51 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCCC-CCCHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 174 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~-~RtvEDLKeRYYsV~~ 174 (303)
..||.||...|.++++.|+. +|-.|+..++. .||--++++||..+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46999999999999999995 99999998874 6999999999998765
No 11
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.93 E-value=0.00015 Score=56.69 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 176 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl 176 (303)
+....||.||-..|+++.+.|+-+|-.|+..++ .||..++|.|||...+++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~-gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVG-SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 344679999999999999999999999997764 799999999999887764
No 12
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.82 E-value=0.00043 Score=54.53 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~k 175 (303)
...||.||-..|+++++.|+-+|-.|+..+ +.||-.++|.||+.+.++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTC-TTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHc-CCCCHHHHHHHHHHHHhc
Confidence 467999999999999999999999999766 469999999999987654
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.68 E-value=0.00034 Score=53.38 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
-..||.||-..|++|.++|+-+|-.|+..+ .||--++|.||+.+
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~l--gRt~~q~knRw~~L 66 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAAL--GRSASSVKDRCRLM 66 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHh--CCCHHHHHHHHHHH
Confidence 457999999999999999999999999998 89999999999975
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.65 E-value=0.00074 Score=49.96 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCCC-CCCHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 174 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~-~RtvEDLKeRYYsV~~ 174 (303)
..||.||...|.++++.|+. +|-.|+..++. .||--++++||..+.+
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 46999999999999999995 99999998874 8999999999997765
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.63 E-value=0.00092 Score=46.69 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
+-..||.||...|.+++++|+- +|-.|+..+ ..||--+.++||+..
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 4567999999999999999997 699999887 479999999999864
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.61 E-value=0.00063 Score=49.21 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
|....||.||-..|.++++.|+. +|-.|+..++ .||-.+.++||..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34467999999999999999995 9999998875 59999999999864
No 17
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.59 E-value=0.00087 Score=52.25 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAIL 177 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~---~~RtvEDLKeRYYsV~~kl~ 177 (303)
.||.||...|.+++++|+. +|-.|...|. ..||--|||+||...+++-.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 5999999999999999999 9999987632 58999999999999887543
No 18
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.58 E-value=0.00094 Score=54.33 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSR 174 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~---~~RtvEDLKeRYYsV~~ 174 (303)
-..||.||...|.+.+++|+- +|--|...|. ..||--|||+||..+.+
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 346999999999999999998 9999998774 68999999999988776
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.58 E-value=0.00078 Score=48.55 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 126 TDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fD-LRw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
....||.||-..|++++++|+ -+|-.|+...+..||-.+.++||..+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346799999999999999999 69999998877689999999999764
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.56 E-value=0.0008 Score=48.33 Aligned_cols=47 Identities=32% Similarity=0.535 Sum_probs=41.4
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
+....||.||-..|.+++++|+. +|-.|+..++ .||--+.++||+.+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 34457999999999999999995 9999998875 69999999999864
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.00055 Score=51.30 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHhhhcC------cceEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022059 126 TDPMWTKEETDQLFELCERFD------LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fD------LRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
....||.||-..|.++.+.|+ -+|-.|+..++ .||..+.++||.....++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999999 79999998765 599999999998777766544
No 22
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.42 E-value=0.0015 Score=49.73 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSR 174 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fD----LRw~VI~DRy~~~RtvEDLKeRYYsV~~ 174 (303)
...||.+|-..|..+...|+ -||-.|+...+ .||.++.|.||..++.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45799999999999999999 69999998876 6999999999987653
No 23
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.42 E-value=0.0015 Score=53.78 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=47.0
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 022059 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (303)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~ 177 (303)
|..+|. ...||.||-..|++++..|+-+|-.|+..++ .||--++|.||++..++-+
T Consensus 44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIP-GRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTST-TCCHHHHHHHHHHTTGGGC
T ss_pred HhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 555553 3579999999999999999999999997654 7999999999998766544
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.16 E-value=0.0011 Score=54.16 Aligned_cols=54 Identities=24% Similarity=0.456 Sum_probs=45.5
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 022059 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~k 175 (303)
|..+|. ...||.||-..|+++.+.|+-+|-.|+..+ +.||-.++|.||+.+.++
T Consensus 69 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 69 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp HHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGS-TTCCHHHHHHHHHTTTTC
T ss_pred HHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHC-CCCCHHHHHHHHHHHHhc
Confidence 445543 457999999999999999999999999766 479999999999976543
No 25
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.03 E-value=0.0033 Score=49.97 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fD----LRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
..||.||-..|..+...|+ -||-.|+...+ .||.++.|.||-.....+...
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999996 68999998886 599999999999998876433
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.00 E-value=0.0016 Score=54.22 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~---~~RtvEDLKeRYYsV~~k 175 (303)
..||.||.+.|.+++++|+- +|--|...|. ..||--|||+||...++.
T Consensus 18 ~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 46999999999999999998 9999988764 589999999999998876
No 27
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.97 E-value=0.0026 Score=47.00 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=42.5
Q ss_pred cCCCCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fD-LRw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
++...||.||-..|.++++.|+ -+|-.|+..++ .||-.+.++||+.+-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHc
Confidence 4456799999999999999999 79999998876 799999999998753
No 28
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.96 E-value=0.0018 Score=54.07 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~---~~RtvEDLKeRYYsV~~k 175 (303)
-..||.||.+.|.+++++|+- +|--|...+. ..||--|||+||....+.
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 346999999999999999998 9999987642 689999999999888764
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.87 E-value=0.0022 Score=49.27 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
...||.||...|.++.+.|+-+|--|+...+ .||.++.++||..
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~-~RT~~qcr~r~~~ 61 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYKDDWNKVSEHVG-SRTQDECILHFLR 61 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSSSCHHHHHHHHS-SCCHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4679999999999999999999999988765 5999999999964
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.67 E-value=0.0029 Score=53.35 Aligned_cols=54 Identities=24% Similarity=0.462 Sum_probs=46.2
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 022059 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (303)
Q Consensus 121 Y~~~L~----d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~k 175 (303)
|..+|. ...||.||-.-|+++.+.|+-+|-.|+..+ +.||-.++|.||++..++
T Consensus 100 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 100 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp HHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-TTCCHHHHHHHHHTTTCC
T ss_pred HHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHC-CCCCHHHHHHHHHHHHhc
Confidence 666663 457999999999999999999999999766 479999999999986543
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.38 E-value=0.0052 Score=47.09 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCc----ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDL----Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
+..||.+|-.-|-+-+..|+. ||-.|++..+. ||+||.+.||-..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 467999999999999999997 89888887765 9999999999754
No 32
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27 E-value=0.0057 Score=44.44 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
..||.||-..+.+....|+=+|-.|+ ++-+.||+.|+..+||.
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia-~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIA-SYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHH-HHCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHH-HHcCCCCHHHHHHHHHH
Confidence 46999999999999999999999999 55568999999999985
No 33
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.69 E-value=0.0082 Score=45.48 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fD----LRw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
...||.||-..|-.++..|+ =||-.|+.-. .||++|++.||=..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 35799999999999999997 6999998875 59999999987443
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=94.53 E-value=0.016 Score=47.34 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 126 ~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
+-..||.||.+.|..++..|+-+|-.|+..++ .||-.+..+||..+.
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-NRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCT-TCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHhhhc
Confidence 34579999999999999999999999998865 699999999998754
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=94.13 E-value=0.023 Score=44.49 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
|+-..||.||...|..+++.|+- +|-.|+..+ +.||..+.++||..+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 49 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhc
Confidence 34467999999999999999998 699999776 579999999999874
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=93.18 E-value=0.03 Score=44.28 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
.||.||-+.|..++..|+- +|..|+...+ .||-.+..+||..+
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNY 46 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHH
Confidence 5999999999999999996 8999987764 79999999999764
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=92.14 E-value=0.054 Score=43.98 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
-..||.||...|.++++.|+- +|-.|+..+ +.||-.+.++||..+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHh
Confidence 357999999999999999996 699998765 479999999999863
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.05 E-value=0.082 Score=42.36 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhhcCc---ceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDL---Rw~VI~DRy~~~RtvEDLKeRYYsV~~kl~ 177 (303)
-||+||-.-++..|++=+- .|.+|+-.. .+||-+++++|||...+-+-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHH-ccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999765 666665332 36999999999999986433
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=91.58 E-value=0.1 Score=42.59 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fD-LRw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
..||.||-+.|..++..|+ -.|-.|+... +.||-.+..+||..+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhcc
Confidence 3599999999999999999 5799998776 4799999999998754
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=91.35 E-value=0.042 Score=42.30 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHhhhcCc----ceEEEecCCCCCCCHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRY 169 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDL----Rw~VI~DRy~~~RtvEDLKeRY 169 (303)
..||++|-.-|=.....|+- ||-.|+...+ .||+||+|.+|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY 65 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHY 65 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHH
Confidence 46999999999899999998 7777776655 59999999887
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=90.62 E-value=0.13 Score=43.15 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV 172 (303)
...||.||-..|.++++.|+- +|-.|+..+ +.||-.+.++||+..
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 457999999999999999996 799998766 579999999999864
No 42
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.28 E-value=0.41 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=39.0
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHH
Q 022059 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 170 (303)
Q Consensus 125 L~d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYY 170 (303)
+..+.||.||.....+-+..|+=.|.-|+--+-+.||+.|+..-||
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999998889999999999999753456899999998887
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=85.08 E-value=0.18 Score=38.38 Aligned_cols=44 Identities=14% Similarity=0.512 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhhcCc---ceEEEecCCCCCCCHHHHHHHHHHHHH
Q 022059 129 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSR 174 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDL---Rw~VI~DRy~~~RtvEDLKeRYYsV~~ 174 (303)
-||+||-.-++.-|++=+- .|.+|+-.. +||-+++++||-...+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 4999999999999999888 999998776 6999999999966543
No 44
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=79.90 E-value=0.48 Score=43.47 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
...||.||...+.+..+.|+=.|.-|+.- -..||+.+.|..||.
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~-VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDV-IGNKSVVQVKNFFVN 176 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHH-HSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHH-cCCCCHHHHHHHHHH
Confidence 45799999999999999999999999876 457999999999984
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=76.20 E-value=1.5 Score=32.58 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 174 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYsV~~ 174 (303)
+.||.||.....+-...|+=.|.-|+--+-+.+|+.|+..=|| .-+
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wK 54 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWK 54 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhc
Confidence 4799999998888899999999999854667899999998888 444
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=71.63 E-value=2.1 Score=39.54 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHhhhcCcc------eEEEecCCCCCCCHHHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDLR------FIVIADRFPSSRTVEELKDRYYGVSR 174 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLR------w~VI~DRy~~~RtvEDLKeRYYsV~~ 174 (303)
..||.||-..|+++.++|+-+ |-.|+ .+-+.||--.+|+||..--+
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence 479999999999999999987 99999 45668999999999988433
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=69.70 E-value=2.9 Score=36.03 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHhhhcC---cceEEEecCCC-CCCCHHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFD---LRFIVIADRFP-SSRTVEELKDRYYGV 172 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fD---LRw~VI~DRy~-~~RtvEDLKeRYYsV 172 (303)
.+||+.|+..|..-|.+|+ -||=-|..--. ..+|.+||++ ||.+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~-y~~~ 55 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR-LGEL 55 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH-HHHH
Confidence 4799999999999999998 24433321101 3689999996 4444
No 48
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=69.50 E-value=1.2 Score=33.69 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCcce----------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHHcCC
Q 022059 127 DPMWTKEETDQLFELCERFDLRF----------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 182 (303)
Q Consensus 127 d~~WTkeETDyLFdLC~~fDLRw----------~VI~DRy---~~~RtvEDLKeRYYsV~~kl~~~R~~ 182 (303)
...||.+||..|+++....+.+| -.|+++. +..||.+..++++=.+.+.+-..+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999877764 3333332 24799999999998888887777654
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=53.80 E-value=7 Score=30.51 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
+.||.||-....+-...|+=.|..|++ +-+.||+.|+-+=||.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhc
Confidence 579999999999999999999999975 4578999999999985
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=52.80 E-value=12 Score=35.33 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=43.5
Q ss_pred cccCCHHH---HHhhcCC--CCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 113 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 113 ip~YtdeE---Y~~~L~d--~~WTkeETDyLFdLC~~fDL-Rw~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
...+|+|| -+++|.. .+||+.+-.....-|.+|+- .|--|+.=+ ...|+||+ .|||.|.
T Consensus 91 ~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev-~~Kt~eEV-~~Y~~vF 155 (304)
T 1ofc_X 91 AEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV-EGKTPEEV-IEYNAVF 155 (304)
T ss_dssp CCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS-TTCCHHHH-HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh-cCCCHHHH-HHHHHHH
Confidence 34588887 5677765 47999999999999999984 232233222 36999999 7888774
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=33.07 E-value=26 Score=34.03 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=42.9
Q ss_pred cccCCHHH---HHhhcCC--CCCCHHHHHHHHHHhhhcCcc-eEEEecCCCCCCCHHHHHHHHHHHH
Q 022059 113 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGVS 173 (303)
Q Consensus 113 ip~YtdeE---Y~~~L~d--~~WTkeETDyLFdLC~~fDLR-w~VI~DRy~~~RtvEDLKeRYYsV~ 173 (303)
...+|+|| -+++|.. .+||+-+=..++..|.+|+-- .--|+.=+++..|+||++ +|+.|.
T Consensus 104 ~~~LTeEE~~EKe~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vF 169 (374)
T 2y9y_A 104 SQPLTEEEEKMKADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAF 169 (374)
T ss_dssp CSSSCHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHH
Confidence 34688887 4566654 489999999999999999832 222222223379999998 888874
No 52
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein structure initiative; HET: 0GY; 1.35A {Sphingomonas paucimobilis} PDB: 4d95_A* 4di8_A* 4di9_A* 4d9d_A 4dia_A 2qah_A 4d8l_A
Probab=29.71 E-value=70 Score=28.69 Aligned_cols=63 Identities=10% Similarity=-0.000 Sum_probs=44.3
Q ss_pred CCccccccCCCccccCCHHHHHhhcC----------CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHH
Q 022059 101 DYSFAKYNKSVDVVKYTDEEYEKYLT----------DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEEL 165 (303)
Q Consensus 101 ~Y~FAKFN~kv~ip~YtdeEY~~~L~----------d~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDL 165 (303)
.||+.. +-...-..||-++|...|. ...+...++++|.+.|+++.=||.-|. -.+...+.++|
T Consensus 40 ~~p~~~-~~~~~~~~~~~e~l~~~m~~~GI~~~Vlvq~~~~~~dN~~ll~~l~~~~~r~~Gva-~vdp~~~~~eL 112 (303)
T 4d9a_A 40 QFPFSP-KAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDNAATLDAIARAQGKARGIA-VVDPAIDEAEL 112 (303)
T ss_dssp TSCCCT-TCSCCBCCBCHHHHHHHHHHHTCSEEEEECCGGGTTCCHHHHHHHHHTTTSEEEEE-CCCTTCCHHHH
T ss_pred cCCCCC-CCCCcCCCCCHHHHHHHHHHcCCCeEEEeccccccccHHHHHHHHHhCCCcEEEEE-EeCCCCCHHHH
Confidence 477754 2222235899999988874 356778899999998889988887776 33444456666
No 53
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=28.89 E-value=79 Score=24.18 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.7
Q ss_pred cceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 022059 147 LRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (303)
Q Consensus 147 LRw~VI~DRy~~~RtvEDLKeRYYsV~~kl~~ 178 (303)
|+.++++||-..+-.++.||.=-+.|..+++.
T Consensus 23 LqliLa~dR~~~p~~l~~lk~eil~VIskYv~ 54 (80)
T 3ku7_A 23 LKLILAKERTLNLPYMEEMRKEIIAVIQKYTK 54 (80)
T ss_dssp EEEEEEEESSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999954577999999999999999996
No 54
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=28.57 E-value=18 Score=33.19 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=22.1
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc-----------CcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~f-----------DLRw~VI~DR 155 (303)
.++++.||-|-|. =+.+|.+.||+|+++| +.|.-||-|+
T Consensus 64 ~lTlYaFStENwk-------Rp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 113 (253)
T 3sgv_B 64 ALTLYAFSSENWN-------RPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDT 113 (253)
T ss_dssp EEEEECC------------------CHHHHHHHHTTHHHHHHHHHHTTCEEEEESCG
T ss_pred EEEEEEEchhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCeEEEEEeeh
Confidence 4667788877764 2568999999998755 6788888766
No 55
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=25.28 E-value=63 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=29.6
Q ss_pred cceEEEecCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 022059 147 LRFIVIADRFP---SSRTVEELKDRYYGVSRAILIA 179 (303)
Q Consensus 147 LRw~VI~DRy~---~~RtvEDLKeRYYsV~~kl~~~ 179 (303)
|+.++++||-+ ++-.+|.||+--..|.++++..
T Consensus 22 LqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~I 57 (95)
T 2kxo_A 22 LQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNV 57 (95)
T ss_dssp EEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheec
Confidence 78999999973 4789999999999999999986
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=23.95 E-value=12 Score=37.42 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 022059 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (303)
Q Consensus 128 ~~WTkeETDyLFdLC~~fDLRw~VI~DRy~~~RtvEDLKeRYYs 171 (303)
..||.+|...+.+..++|+=.|--|++- -..||+.+.|.-||.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~-VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDV-IGNKSVVQVKNFFVN 423 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHH-HSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHH-hCCCCHHHHHHHHHH
Confidence 5799999999999999999999999866 457999999997763
No 57
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=23.94 E-value=22 Score=31.80 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.3
Q ss_pred CccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhh---------cCcceEEEecC
Q 022059 111 VDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER---------FDLRFIVIADR 155 (303)
Q Consensus 111 v~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~---------fDLRw~VI~DR 155 (303)
++++.||.|-+. =+.+|.+.||+|+++ ++.|.-+|.|+
T Consensus 51 lTlYaFSteN~k-------Rp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~~ 97 (227)
T 2vg0_A 51 ATVYLLSTENLQ-------RDPDELAALIEIITDVVEEICAPANHWSVRTVGDL 97 (227)
T ss_dssp EEEEEEETGGGG-------SCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESCG
T ss_pred EEEEeecccccC-------CCHHHHHHHHHHHHHHHHHHhccccCeEEEecCCh
Confidence 455666544443 246899999999865 57899999876
No 58
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=23.47 E-value=20 Score=32.44 Aligned_cols=39 Identities=28% Similarity=0.603 Sum_probs=29.2
Q ss_pred CCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhh-----------cCcceEEEecC
Q 022059 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADR 155 (303)
Q Consensus 110 kv~ip~YtdeEY~~~L~d~~WTkeETDyLFdLC~~-----------fDLRw~VI~DR 155 (303)
.++++.||-|-|.+ +.+|.+.||+|+++ .+.|.-||-|+
T Consensus 53 ~lTlYaFStENw~R-------p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 102 (225)
T 3ugs_B 53 NLSLFAFSTENWKR-------PKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDL 102 (225)
T ss_dssp EEEEEEEESGGGGS-------CHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESCG
T ss_pred EEEEEEEcccccCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 35666777766643 68999999999875 46788888776
No 59
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=20.63 E-value=72 Score=29.75 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 022059 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (303)
Q Consensus 129 ~WTkeETDyLFdLC~~fDLRw~VI~DRy~ 157 (303)
.||++|-..|.++|+++|+ |+|.-|-|.
T Consensus 190 ~~s~~~~~~l~~~~~~~~~-~vi~De~Y~ 217 (405)
T 3k7y_A 190 NIEEKYFDEIIEIVLHKKH-VIIFDIAYQ 217 (405)
T ss_dssp CCCHHHHHHHHHHHHHHCC-EEEEEESCT
T ss_pred CCCHHHHHHHHHHHHHCCe-EEEEecCcc
Confidence 5999999999999999986 555555665
No 60
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=20.07 E-value=5.1e+02 Score=25.31 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhcCcceEEEec--------------CCCCCCCHHHHHH-----------HHH-HHHHHHHHHcCCCCC
Q 022059 132 KEETDQLFELCERFDLRFIVIAD--------------RFPSSRTVEELKD-----------RYY-GVSRAILIARAPSPT 185 (303)
Q Consensus 132 keETDyLFdLC~~fDLRw~VI~D--------------Ry~~~RtvEDLKe-----------RYY-sV~~kl~~~R~~~~~ 185 (303)
..+...|-.|++.++++-+++.| .|+...|+|||+. +++ .-+.+.|+.|-+.
T Consensus 230 ~gD~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~r~Gi-- 307 (519)
T 1qgu_B 230 LGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQ-- 307 (519)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCCCBCHHHHHHGGGEEEEEESSTTTCHHHHHHHHHTSCC--
T ss_pred cccHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCCCCCHHHHHhhhcCCEEEEECHHHHHHHHHHHHHHcCC--
Confidence 56778899999999999999887 4556799999996 343 3344566776543
Q ss_pred CCCCCCccC--CCCChHHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 022059 186 DVSGHPLVK--DPYNVSQEVERKRALSMVLSQT-KHQERKDAE 225 (303)
Q Consensus 186 ~~~~~~l~~--~~fd~~~E~~RK~~L~~Ll~RT-~eqi~EEe~ 225 (303)
|++. ++|-.+.=.+==+.|..++.+. ++.+++|+.
T Consensus 308 -----P~i~~~~PiG~~~T~~~L~~la~~~g~~~~~~i~~er~ 345 (519)
T 1qgu_B 308 -----PATEVAIPLGLAATDELLMTVSQLSGKPIADALTLERG 345 (519)
T ss_dssp -----CCCCCCCCBSHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred -----CeEecCCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 3333 2454444333345566777775 555555543
Done!