Query 022060
Match_columns 303
No_of_seqs 242 out of 1650
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.4 1.8E-13 6.2E-18 100.1 5.8 55 28-82 10-64 (69)
2 2ect_A Ring finger protein 126 99.4 1.7E-13 5.8E-18 102.6 5.2 56 29-84 12-67 (78)
3 2l0b_A E3 ubiquitin-protein li 99.4 1.2E-13 4.1E-18 107.1 4.4 53 29-81 37-89 (91)
4 2ep4_A Ring finger protein 24; 99.4 3.5E-13 1.2E-17 99.8 5.6 54 29-82 12-65 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.4 2.3E-13 8E-18 95.0 3.9 50 31-80 4-54 (55)
6 1x4j_A Ring finger protein 38; 99.4 2.6E-13 9E-18 101.0 3.8 53 29-81 20-72 (75)
7 2djb_A Polycomb group ring fin 99.4 4.6E-13 1.6E-17 99.0 5.0 53 30-84 13-65 (72)
8 3ng2_A RNF4, snurf, ring finge 99.3 5.1E-13 1.7E-17 97.8 3.9 57 28-84 6-66 (71)
9 3lrq_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 106.1 2.5 60 32-93 22-82 (100)
10 1t1h_A Gspef-atpub14, armadill 99.3 1.2E-12 4.1E-17 97.9 4.8 63 29-94 5-68 (78)
11 2y43_A E3 ubiquitin-protein li 99.3 1E-12 3.5E-17 102.9 4.0 61 32-94 22-82 (99)
12 2ecm_A Ring finger and CHY zin 99.3 1.6E-12 5.4E-17 90.6 4.4 50 31-80 4-54 (55)
13 1v87_A Deltex protein 2; ring- 99.3 2.4E-12 8.1E-17 103.1 6.0 54 29-82 22-95 (114)
14 2ea6_A Ring finger protein 4; 99.3 2.1E-12 7.1E-17 93.8 4.8 52 30-81 13-68 (69)
15 2ecl_A Ring-box protein 2; RNF 99.3 1.5E-12 5.3E-17 98.8 4.1 52 31-82 14-77 (81)
16 2csy_A Zinc finger protein 183 99.3 5.2E-12 1.8E-16 95.3 6.3 49 29-80 12-60 (81)
17 1chc_A Equine herpes virus-1 r 99.3 2E-12 6.9E-17 94.0 3.8 48 31-80 4-51 (68)
18 2xeu_A Ring finger protein 4; 99.3 2E-12 6.8E-17 92.5 3.4 54 31-84 2-59 (64)
19 2ckl_A Polycomb group ring fin 99.3 3.3E-12 1.1E-16 101.5 4.9 50 31-82 14-63 (108)
20 2d8t_A Dactylidin, ring finger 99.2 4.5E-12 1.5E-16 93.4 3.8 50 29-81 12-61 (71)
21 2ckl_B Ubiquitin ligase protei 99.2 1.1E-12 3.9E-17 111.9 0.6 62 31-94 53-116 (165)
22 3dpl_R Ring-box protein 1; ubi 99.2 5.3E-12 1.8E-16 101.1 4.4 51 31-81 36-101 (106)
23 2ct2_A Tripartite motif protei 99.2 1E-11 3.5E-16 94.4 5.8 54 30-83 13-70 (88)
24 2ecy_A TNF receptor-associated 99.2 8.4E-12 2.9E-16 90.5 4.7 50 31-83 14-64 (66)
25 3ztg_A E3 ubiquitin-protein li 99.2 1.4E-11 4.9E-16 94.8 6.1 62 30-94 11-76 (92)
26 2yur_A Retinoblastoma-binding 99.2 9.5E-12 3.2E-16 92.5 4.7 51 30-83 13-66 (74)
27 2ysl_A Tripartite motif-contai 99.2 9.7E-12 3.3E-16 91.5 4.7 51 30-83 18-71 (73)
28 4ayc_A E3 ubiquitin-protein li 99.2 4.7E-12 1.6E-16 105.2 2.8 49 32-83 53-101 (138)
29 3fl2_A E3 ubiquitin-protein li 99.2 1.2E-11 4E-16 100.7 4.8 60 32-94 52-113 (124)
30 2ecn_A Ring finger protein 141 99.2 4.1E-12 1.4E-16 93.0 1.7 50 30-83 13-62 (70)
31 2kre_A Ubiquitin conjugation f 99.1 4.6E-11 1.6E-15 94.5 6.0 64 31-97 28-91 (100)
32 2ecw_A Tripartite motif-contai 99.1 2.2E-11 7.5E-16 91.5 3.9 50 31-83 18-73 (85)
33 1wgm_A Ubiquitin conjugation f 99.1 4.6E-11 1.6E-15 94.2 5.9 66 31-99 21-87 (98)
34 2egp_A Tripartite motif-contai 99.1 8.2E-12 2.8E-16 93.2 1.1 50 31-83 11-67 (79)
35 1z6u_A NP95-like ring finger p 99.1 3.9E-11 1.3E-15 101.5 5.3 62 31-95 77-140 (150)
36 2kr4_A Ubiquitin conjugation f 99.1 3.5E-11 1.2E-15 92.3 4.5 62 31-95 13-74 (85)
37 1g25_A CDK-activating kinase a 99.1 3E-11 1E-15 87.3 3.8 53 32-84 3-58 (65)
38 2ecv_A Tripartite motif-contai 99.1 2.7E-11 9.2E-16 91.1 3.7 51 31-84 18-74 (85)
39 1jm7_B BARD1, BRCA1-associated 99.1 2.6E-11 8.8E-16 97.9 2.4 58 32-93 22-79 (117)
40 4a0k_B E3 ubiquitin-protein li 99.1 1.2E-11 4.2E-16 100.7 0.4 51 31-81 47-112 (117)
41 2ysj_A Tripartite motif-contai 99.1 8E-11 2.7E-15 84.4 4.5 43 30-75 18-63 (63)
42 4ap4_A E3 ubiquitin ligase RNF 99.1 5E-11 1.7E-15 96.7 3.8 55 30-84 5-63 (133)
43 2d8s_A Cellular modulator of i 99.1 8.2E-11 2.8E-15 89.5 4.1 54 28-82 11-71 (80)
44 1jm7_A BRCA1, breast cancer ty 99.0 4.5E-11 1.5E-15 94.9 2.0 50 32-84 21-73 (112)
45 3hct_A TNF receptor-associated 99.0 7.7E-11 2.7E-15 95.2 3.0 61 31-94 17-78 (118)
46 2yu4_A E3 SUMO-protein ligase 99.0 2.8E-10 9.6E-15 88.7 5.6 66 31-98 6-80 (94)
47 3l11_A E3 ubiquitin-protein li 99.0 3.4E-11 1.2E-15 96.6 -0.1 49 30-81 13-62 (115)
48 2ecj_A Tripartite motif-contai 99.0 2.7E-10 9.2E-15 79.9 4.1 42 31-75 14-58 (58)
49 1e4u_A Transcriptional repress 99.0 3.5E-10 1.2E-14 85.6 4.9 53 30-83 9-64 (78)
50 1rmd_A RAG1; V(D)J recombinati 99.0 8E-11 2.7E-15 94.6 1.3 50 32-84 23-73 (116)
51 2ct0_A Non-SMC element 1 homol 99.0 6.7E-10 2.3E-14 83.4 5.3 49 32-82 15-65 (74)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 3E-10 1E-14 92.0 3.5 56 29-84 69-128 (133)
53 2c2l_A CHIP, carboxy terminus 98.9 5.7E-10 1.9E-14 101.2 4.5 66 29-97 205-271 (281)
54 2vje_A E3 ubiquitin-protein li 98.9 9.2E-10 3.1E-14 79.9 3.9 49 29-80 5-56 (64)
55 1bor_A Transcription factor PM 98.9 4.9E-10 1.7E-14 79.0 1.6 48 29-82 3-50 (56)
56 3htk_C E3 SUMO-protein ligase 98.8 1E-09 3.4E-14 100.6 3.4 62 32-95 181-246 (267)
57 3knv_A TNF receptor-associated 98.8 7E-10 2.4E-14 92.8 1.6 48 30-80 29-77 (141)
58 3hcs_A TNF receptor-associated 98.8 1.4E-09 4.7E-14 93.0 3.2 61 31-94 17-78 (170)
59 2vje_B MDM4 protein; proto-onc 98.8 3.3E-09 1.1E-13 76.7 3.8 48 30-80 5-55 (63)
60 2f42_A STIP1 homology and U-bo 98.8 3.6E-09 1.2E-13 92.1 4.2 65 30-97 104-169 (179)
61 2y1n_A E3 ubiquitin-protein li 98.8 4.5E-09 1.6E-13 101.4 5.0 48 32-82 332-380 (389)
62 4ic3_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 80.1 1.8 43 32-81 24-67 (74)
63 2ecg_A Baculoviral IAP repeat- 98.6 1.2E-08 4E-13 76.0 1.7 43 32-81 25-68 (75)
64 2ea5_A Cell growth regulator w 98.5 4.9E-08 1.7E-12 71.6 4.1 47 28-81 11-58 (68)
65 1wim_A KIAA0161 protein; ring 98.5 3.9E-08 1.3E-12 76.1 2.4 48 31-78 4-61 (94)
66 3k1l_B Fancl; UBC, ring, RWD, 98.5 3E-08 1E-12 93.9 1.6 53 29-81 305-373 (381)
67 2bay_A PRE-mRNA splicing facto 98.5 5E-08 1.7E-12 70.2 2.1 52 32-85 3-54 (61)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1.3E-07 4.3E-12 68.0 4.1 51 28-81 2-59 (60)
69 2yho_A E3 ubiquitin-protein li 98.4 3.9E-08 1.3E-12 74.2 1.4 43 32-81 18-61 (79)
70 3t6p_A Baculoviral IAP repeat- 98.2 1.9E-07 6.5E-12 88.9 1.1 43 32-81 295-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.1 2.2E-06 7.4E-11 67.4 3.4 46 34-81 3-49 (101)
72 3nw0_A Non-structural maintena 97.7 3E-05 1E-09 70.1 4.5 50 32-83 180-231 (238)
73 2ko5_A Ring finger protein Z; 95.9 0.0028 9.6E-08 49.1 1.7 46 33-82 29-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0084 2.9E-07 46.1 3.3 34 31-65 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.2 0.071 2.4E-06 38.5 3.4 52 25-79 5-60 (66)
76 2l5u_A Chromodomain-helicase-D 88.6 0.21 7.2E-06 35.2 2.1 50 25-77 4-57 (61)
77 3i2d_A E3 SUMO-protein ligase 87.9 0.32 1.1E-05 46.4 3.5 60 33-94 250-313 (371)
78 4fo9_A E3 SUMO-protein ligase 86.5 0.5 1.7E-05 44.9 4.0 60 33-94 216-279 (360)
79 3m62_A Ubiquitin conjugation f 84.5 0.71 2.4E-05 49.0 4.4 64 30-96 889-953 (968)
80 1fp0_A KAP-1 corepressor; PHD 83.0 0.52 1.8E-05 35.9 1.9 52 25-79 18-73 (88)
81 3o36_A Transcription intermedi 82.4 0.32 1.1E-05 41.5 0.5 47 30-79 2-52 (184)
82 2cs3_A Protein C14ORF4, MY039 82.1 1.4 4.7E-05 33.1 3.8 43 30-75 13-64 (93)
83 1mm2_A MI2-beta; PHD, zinc fin 81.6 0.4 1.4E-05 33.7 0.7 49 28-79 5-57 (61)
84 3u5n_A E3 ubiquitin-protein li 81.2 0.23 7.8E-06 43.2 -0.8 49 28-79 3-55 (207)
85 2lbm_A Transcriptional regulat 80.3 1.5 5.3E-05 36.2 4.0 47 28-77 59-116 (142)
86 2k16_A Transcription initiatio 78.6 0.57 2E-05 34.0 0.8 50 30-80 16-70 (75)
87 1we9_A PHD finger family prote 78.5 0.38 1.3E-05 33.9 -0.2 49 30-78 4-58 (64)
88 1xwh_A Autoimmune regulator; P 77.9 0.34 1.2E-05 34.6 -0.6 48 28-78 4-55 (66)
89 2ysm_A Myeloid/lymphoid or mix 74.4 1 3.5E-05 35.1 1.2 49 28-76 3-55 (111)
90 2yql_A PHD finger protein 21A; 74.3 0.3 1E-05 33.7 -1.7 45 29-76 6-54 (56)
91 1weo_A Cellulose synthase, cat 73.8 5.9 0.0002 30.2 5.2 50 31-80 15-69 (93)
92 2d8v_A Zinc finger FYVE domain 73.7 2.1 7.2E-05 30.8 2.6 34 28-65 4-38 (67)
93 1wil_A KIAA1045 protein; ring 73.6 3.2 0.00011 31.4 3.7 35 30-65 13-47 (89)
94 1z60_A TFIIH basal transcripti 72.7 1.3 4.4E-05 31.2 1.3 43 33-75 16-58 (59)
95 1f62_A Transcription factor WS 71.8 1.9 6.5E-05 28.7 1.9 44 34-77 2-49 (51)
96 2lv9_A Histone-lysine N-methyl 69.1 1.5 5.1E-05 33.7 1.1 45 32-77 28-75 (98)
97 2puy_A PHD finger protein 21A; 68.5 0.63 2.2E-05 32.4 -1.1 46 30-78 3-52 (60)
98 1weu_A Inhibitor of growth fam 64.5 4 0.00014 31.1 2.6 48 28-79 32-86 (91)
99 2ro1_A Transcription intermedi 62.7 1.8 6E-05 37.2 0.3 44 32-78 2-49 (189)
100 1wen_A Inhibitor of growth fam 59.1 4.9 0.00017 29.0 2.2 47 28-79 12-66 (71)
101 2vpb_A Hpygo1, pygopus homolog 58.5 7 0.00024 27.7 2.9 32 31-62 7-40 (65)
102 1y02_A CARP2, FYVE-ring finger 57.3 0.87 3E-05 36.6 -2.4 51 29-79 16-67 (120)
103 2kgg_A Histone demethylase jar 56.7 9.3 0.00032 25.5 3.1 44 33-76 3-52 (52)
104 3t7l_A Zinc finger FYVE domain 56.5 6.2 0.00021 29.6 2.4 37 29-65 17-54 (90)
105 1wep_A PHF8; structural genomi 56.1 6.9 0.00024 28.5 2.6 48 31-79 11-64 (79)
106 3ql9_A Transcriptional regulat 55.9 9.1 0.00031 31.0 3.5 47 28-77 53-110 (129)
107 1z2q_A LM5-1; membrane protein 55.8 6.9 0.00024 28.9 2.6 37 28-64 17-54 (84)
108 3lqh_A Histone-lysine N-methyl 55.8 2.7 9.4E-05 36.0 0.4 47 33-79 3-64 (183)
109 2e6r_A Jumonji/ARID domain-con 55.7 0.92 3.2E-05 34.6 -2.4 50 28-77 12-65 (92)
110 1joc_A EEA1, early endosomal a 55.4 6.3 0.00021 31.5 2.4 36 29-64 66-102 (125)
111 4gne_A Histone-lysine N-methyl 54.7 5.3 0.00018 31.3 1.8 53 25-82 8-66 (107)
112 2zet_C Melanophilin; complex, 53.7 6.8 0.00023 32.6 2.4 46 31-77 67-116 (153)
113 1x4u_A Zinc finger, FYVE domai 53.6 7.2 0.00025 28.8 2.3 35 28-62 10-45 (84)
114 2l43_A N-teminal domain from h 53.2 1.1 3.9E-05 33.8 -2.2 55 29-83 22-80 (88)
115 2yw8_A RUN and FYVE domain-con 53.2 6.9 0.00024 28.8 2.2 36 29-64 16-52 (82)
116 3v43_A Histone acetyltransfera 51.8 18 0.00061 28.0 4.5 32 32-63 5-42 (112)
117 1zbd_B Rabphilin-3A; G protein 51.6 5.4 0.00019 32.4 1.5 34 30-63 53-88 (134)
118 2yt5_A Metal-response element- 46.2 6.1 0.00021 27.5 0.9 50 30-79 4-62 (66)
119 2pv0_B DNA (cytosine-5)-methyl 46.2 13 0.00043 35.6 3.3 48 28-78 89-148 (386)
120 3a1b_A DNA (cytosine-5)-methyl 45.3 10 0.00035 31.8 2.2 47 28-77 75-133 (159)
121 3v43_A Histone acetyltransfera 45.1 5.9 0.0002 30.8 0.7 44 34-77 63-111 (112)
122 1wem_A Death associated transc 44.6 15 0.00052 26.3 2.8 47 31-78 15-70 (76)
123 1wd2_A Ariadne-1 protein homol 43.0 3.4 0.00012 28.9 -0.9 37 32-68 6-47 (60)
124 1dvp_A HRS, hepatocyte growth 42.7 9.7 0.00033 33.0 1.8 33 32-64 161-194 (220)
125 3mpx_A FYVE, rhogef and PH dom 41.8 5.4 0.00019 37.6 0.0 51 29-79 372-430 (434)
126 1vfy_A Phosphatidylinositol-3- 41.7 14 0.00047 26.5 2.2 32 32-63 11-43 (73)
127 1wfk_A Zinc finger, FYVE domai 41.5 13 0.00045 27.7 2.1 33 32-64 9-42 (88)
128 3zyq_A Hepatocyte growth facto 40.6 11 0.00036 33.1 1.7 33 32-64 164-197 (226)
129 2xb1_A Pygopus homolog 2, B-ce 39.6 13 0.00044 28.7 1.8 48 32-79 3-62 (105)
130 2ku3_A Bromodomain-containing 37.0 24 0.00082 25.3 2.9 50 28-77 12-65 (71)
131 2gmg_A Hypothetical protein PF 35.8 10 0.00035 29.7 0.7 31 46-81 66-96 (105)
132 1wew_A DNA-binding family prot 35.5 24 0.00081 25.5 2.7 50 28-78 12-72 (78)
133 3ask_A E3 ubiquitin-protein li 35.4 7.8 0.00027 34.4 -0.0 45 33-77 175-224 (226)
134 2a20_A Regulating synaptic mem 35.1 24 0.00081 24.8 2.4 49 29-77 6-59 (62)
135 2e6s_A E3 ubiquitin-protein li 34.5 8.3 0.00028 28.2 -0.0 45 33-77 27-76 (77)
136 2jmo_A Parkin; IBR, E3 ligase, 34.3 3.4 0.00011 30.4 -2.2 16 52-67 55-70 (80)
137 2o35_A Hypothetical protein DU 33.9 15 0.00051 28.5 1.4 13 56-68 42-54 (105)
138 3fyb_A Protein of unknown func 33.6 15 0.00052 28.4 1.4 12 56-67 41-52 (104)
139 3shb_A E3 ubiquitin-protein li 33.6 5.2 0.00018 29.4 -1.2 27 51-77 45-76 (77)
140 2vnf_A ING 4, P29ING4, inhibit 33.3 5.1 0.00017 27.8 -1.3 44 29-77 7-58 (60)
141 3c6w_A P28ING5, inhibitor of g 31.3 8.2 0.00028 26.7 -0.5 43 30-77 7-57 (59)
142 2ri7_A Nucleosome-remodeling f 31.2 25 0.00085 29.0 2.5 50 28-78 4-59 (174)
143 3asl_A E3 ubiquitin-protein li 27.2 10 0.00035 27.1 -0.6 44 34-77 20-68 (70)
144 2jne_A Hypothetical protein YF 26.7 21 0.0007 27.6 1.0 41 32-80 32-72 (101)
145 2kwj_A Zinc finger protein DPF 25.8 33 0.0011 26.6 2.1 32 33-64 2-40 (114)
146 1m3v_A FLIN4, fusion of the LI 25.6 42 0.0014 25.9 2.7 50 34-83 34-83 (122)
147 2ct7_A Ring finger protein 31; 25.4 5.9 0.0002 29.3 -2.2 31 35-65 28-61 (86)
148 1wev_A Riken cDNA 1110020M19; 24.5 13 0.00046 27.6 -0.4 49 31-79 15-73 (88)
149 2fiy_A Protein FDHE homolog; F 23.5 7.1 0.00024 36.1 -2.5 48 30-78 180-231 (309)
150 3mjh_B Early endosome antigen 23.5 20 0.00069 22.2 0.3 10 33-42 6-15 (34)
151 2jrp_A Putative cytoplasmic pr 21.9 6.4 0.00022 29.4 -2.6 39 33-79 3-41 (81)
152 1wee_A PHD finger family prote 20.8 37 0.0013 24.0 1.4 47 31-78 15-66 (72)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=100.08 Aligned_cols=55 Identities=29% Similarity=0.765 Sum_probs=47.6
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
.++.+..|+||++.|.....+..++|+|.||..||..|+..+..||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3445778999999997667778889999999999999999999999999998654
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.7e-13 Score=102.57 Aligned_cols=56 Identities=21% Similarity=0.723 Sum_probs=48.0
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
...+..|+||++.|.....+.+++|+|.||..||..|++.+..||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34477899999999665666778999999999999999999999999999976543
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=107.10 Aligned_cols=53 Identities=34% Similarity=0.731 Sum_probs=46.2
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.+.+..|+||++.|..++.+..++|+|.||..||..|+..+..||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34577899999999766667778999999999999999999999999998753
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=99.84 Aligned_cols=54 Identities=31% Similarity=0.864 Sum_probs=46.6
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
...+..|+||++.|.....+.+++|+|.||..||..|++.+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344778999999997666677789999999999999999989999999988643
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=2.3e-13 Score=95.03 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=43.6
Q ss_pred CccccccccccccCCCCeeecc-CCccccHHhHHHHHhcCCCCCCCcccCc
Q 022060 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~-C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
++.+|+||++.|..++.+..++ |+|.||..||..|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3778999999997666666666 9999999999999999999999999874
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=100.99 Aligned_cols=53 Identities=30% Similarity=0.767 Sum_probs=46.1
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.+++..|+||++.|...+.+..++|+|.||..||..|++.+..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34577899999999666666778999999999999999999999999998864
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.6e-13 Score=99.00 Aligned_cols=53 Identities=28% Similarity=0.561 Sum_probs=46.1
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
+++..|+||++.| .+++++++|+|.||..||..|++.+..||+||+.+...++
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 3478899999999 5666667999999999999999989999999999976654
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.34 E-value=5.1e-13 Score=97.83 Aligned_cols=57 Identities=30% Similarity=0.610 Sum_probs=47.3
Q ss_pred CCCCccccccccccccCC----CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022060 28 QDSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~----~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
..+++..|+||++.|.+. ..+.+++|+|.||..||..|+..+..||+||+.+...+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 445588899999998542 334778999999999999999999999999999976654
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=3.7e-13 Score=106.08 Aligned_cols=60 Identities=27% Similarity=0.660 Sum_probs=49.0
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCcCCCcchHHHHHHH
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV 93 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~~~d~~~~~l~e~~ 93 (303)
+..|+||++.| .+++.+++|+|.||..||..|+... ..||+||..+...++.....+..+
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i 82 (100)
T 3lrq_A 22 VFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82 (100)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHH
T ss_pred CCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHH
Confidence 78899999999 5565548999999999999999887 699999999987666554444443
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.31 E-value=1.2e-12 Score=97.88 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=49.8
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCCCcchHHHHHHHH
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
-.++..|+||++.| .+++. ++|+|.||..||..|+.. ...||+||+.+...++..+..+..+.
T Consensus 5 ~~~~~~C~IC~~~~--~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i 68 (78)
T 1t1h_A 5 FPEYFRCPISLELM--KDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLI 68 (78)
T ss_dssp CSSSSSCTTTSCCC--SSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHH
T ss_pred CcccCCCCCccccc--cCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHH
Confidence 34588999999999 55544 599999999999999987 78899999999877665554444433
No 11
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=102.89 Aligned_cols=61 Identities=23% Similarity=0.592 Sum_probs=50.2
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHH
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
+..|+||++.| .+++.+++|+|.||..||..|+.....||+||..+...++..+..+..+.
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i 82 (99)
T 2y43_A 22 LLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELV 82 (99)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHH
Confidence 67899999999 55555569999999999999999889999999999876666555555443
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.6e-12 Score=90.62 Aligned_cols=50 Identities=34% Similarity=0.705 Sum_probs=43.1
Q ss_pred CccccccccccccCC-CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022060 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
.+..|+||++.|.+. ..+.+++|+|.||..||..|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999998543 35777899999999999999998899999999874
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=2.4e-12 Score=103.07 Aligned_cols=54 Identities=33% Similarity=0.700 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCC---------------CeeeccCCccccHHhHHHHH-----hcCCCCCCCcccCcCC
Q 022060 29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWC-----QRSSQCPMCWQPISLK 82 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~---------------~~~vl~C~H~Fc~~CI~~Wl-----~~~~~CP~CR~~l~~~ 82 (303)
...+..|+||++.|.... .+.+++|+|.||..||..|+ ..+..||+||+.+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 334678999999994321 23378999999999999999 4467899999988643
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=93.77 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=43.6
Q ss_pred CCccccccccccccCC----CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~----~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.++..|+||++.|.+. ..+.+++|+|.||..||..|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4478899999999542 224678999999999999999999999999998854
No 15
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=98.82 Aligned_cols=52 Identities=29% Similarity=0.723 Sum_probs=41.9
Q ss_pred CccccccccccccC-----------CC-CeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022060 31 CDDACSICLEEFSE-----------SD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 31 ~d~~C~ICle~f~~-----------~~-~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
+++.|+||++.|.+ ++ .+.+++|+|.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 46779999998843 12 334556999999999999999999999999988643
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.2e-12 Score=95.27 Aligned_cols=49 Identities=35% Similarity=0.765 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
.+.+..|+||++.| .++ .+++|+|.||..||..|+.....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh--cCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34477899999999 444 45799999999999999998899999999986
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=2e-12 Score=94.04 Aligned_cols=48 Identities=33% Similarity=0.887 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
.+..|+||++.+ .+++..++|+|.||..||..|+..+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 467899999998 566678899999999999999998999999999885
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=92.49 Aligned_cols=54 Identities=30% Similarity=0.623 Sum_probs=45.2
Q ss_pred CccccccccccccCC----CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022060 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 31 ~d~~C~ICle~f~~~----~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
++.+|+||++.|.+. +.+.+++|+|.||..||..|+..+..||+||+.+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 367899999998531 334678999999999999999999999999999876553
No 19
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=3.3e-12 Score=101.55 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=44.3
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
++..|+||++.| .+++++++|+|.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 378899999999 56666669999999999999999999999999998765
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.5e-12 Score=93.38 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
..++..|+||++.| .++ +.++|+|.||..||..|+.....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBC--SSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCccc--CCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34577899999998 444 556999999999999999999999999999863
No 21
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=1.1e-12 Score=111.86 Aligned_cols=62 Identities=23% Similarity=0.585 Sum_probs=47.8
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCC-CcchHHHHHHHH
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK-DATSQELLEAVE 94 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~-d~~~~~l~e~~~ 94 (303)
++..|+||++.| .+++.+++|+|.||..||..|+.. ...||+||..+... .+..+..+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i 116 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALI 116 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHH
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHH
Confidence 366899999999 566666699999999999999987 77899999998543 334444444443
No 22
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.22 E-value=5.3e-12 Score=101.12 Aligned_cols=51 Identities=24% Similarity=0.635 Sum_probs=43.0
Q ss_pred CccccccccccccCC---------------CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 31 CDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 31 ~d~~C~ICle~f~~~---------------~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
+++.|+||++.|... ..+.+++|+|.||..||..|+..+..||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 477899999998532 125668999999999999999999999999998754
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=94.38 Aligned_cols=54 Identities=26% Similarity=0.583 Sum_probs=44.3
Q ss_pred CCccccccccccccCCCC-eeeccCCccccHHhHHHHHhcC---CCCCCCcccCcCCC
Q 022060 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD 83 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~Wl~~~---~~CP~CR~~l~~~d 83 (303)
.++.+|+||++.|.+.+. +.+++|+|.||..||..|+... ..||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 347889999999954332 6677999999999999999875 78999999886543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.4e-12 Score=90.51 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=42.3
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHh-cCCCCCCCcccCcCCC
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-~~~~CP~CR~~l~~~d 83 (303)
++..|+||++.+ .+++. ++|+|.||..||..|+. ....||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVL--CSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEE--SSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHh--cCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 478899999999 55555 69999999999999994 5678999999987654
No 25
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=94.79 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=47.2
Q ss_pred CCccccccccccccCCCCeeecc-CCccccHHhHHHHHhcC--CCCCCCcccC-cCCCcchHHHHHHHH
Q 022060 30 SCDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPI-SLKDATSQELLEAVE 94 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~-C~H~Fc~~CI~~Wl~~~--~~CP~CR~~l-~~~d~~~~~l~e~~~ 94 (303)
.++..|+||++.| .++++ ++ |+|.||..||..|+... ..||+||+.+ ...++..+..+..+.
T Consensus 11 ~~~~~C~IC~~~~--~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 76 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAV 76 (92)
T ss_dssp CTTTEETTTTEEC--SSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHH
T ss_pred CcCCCCCCCChhh--cCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHH
Confidence 3478999999999 56655 47 99999999999999643 5899999997 444555555444443
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=9.5e-12 Score=92.52 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCCeeecc-CCccccHHhHHHHHhcC--CCCCCCcccCcCCC
Q 022060 30 SCDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~-C~H~Fc~~CI~~Wl~~~--~~CP~CR~~l~~~d 83 (303)
.++..|+||++.| .+++. ++ |+|.||..||..|+... ..||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHH--hCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3478899999999 56655 57 99999999999999865 68999999865443
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.7e-12 Score=91.52 Aligned_cols=51 Identities=25% Similarity=0.691 Sum_probs=42.3
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHh---cCCCCCCCcccCcCCC
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQPISLKD 83 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~---~~~~CP~CR~~l~~~d 83 (303)
.++..|+||++.| .++ .+++|+|.||..||..|+. ....||+||+.+...+
T Consensus 18 ~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDIL--QKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBC--SSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCccc--CCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3478899999998 444 4569999999999999997 4568999999987654
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=4.7e-12 Score=105.21 Aligned_cols=49 Identities=35% Similarity=0.828 Sum_probs=42.8
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
+..|+||++.| .++ ++++|+|.||..||..|+..+..||+||+.+....
T Consensus 53 ~~~C~iC~~~~--~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYF--IEA-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBC--SSE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCccc--CCc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 67899999999 444 55699999999999999999999999999987554
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=100.70 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=47.6
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCcC-CCcchHHHHHHHH
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL-KDATSQELLEAVE 94 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~~-~d~~~~~l~e~~~ 94 (303)
+..|+||++.| .++ +.++|+|.||..||..|+... ..||+||+.+.. .++..+..+..+.
T Consensus 52 ~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 113 (124)
T 3fl2_A 52 TFQCICCQELV--FRP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVL 113 (124)
T ss_dssp HTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHH
T ss_pred CCCCCcCChHH--cCc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence 67899999999 454 445999999999999999854 489999999976 5555555555544
No 30
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.1e-12 Score=93.03 Aligned_cols=50 Identities=26% Similarity=0.833 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
.++..|+||++.+. + .+++|+|.||..||..|+.....||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCC--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCcc--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34778999999983 3 66799999999999999999999999999887543
No 31
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.14 E-value=4.6e-11 Score=94.54 Aligned_cols=64 Identities=13% Similarity=0.028 Sum_probs=53.5
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHHHHH
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQER 97 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~~er 97 (303)
++..|+||++.| .+|+++ +|||.||..||..|+.....||+|+.++...++.++..+.......
T Consensus 28 ~~~~CpI~~~~m--~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 28 DEFRDPLMDTLM--TDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp TTTBCTTTCSBC--SSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred HhhCCcCccCcc--cCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 478899999999 566554 8999999999999999888999999999988888776666555443
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=2.2e-11 Score=91.55 Aligned_cols=50 Identities=28% Similarity=0.743 Sum_probs=42.5
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhc------CCCCCCCcccCcCCC
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~------~~~CP~CR~~l~~~d 83 (303)
++..|+||++.| .+++ +++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELL--KEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCC--SSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhh--Ccce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 478899999999 5554 5699999999999999987 678999999987554
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=4.6e-11 Score=94.16 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=54.4
Q ss_pred CccccccccccccCCCCeeeccCC-ccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHHHHHhh
Q 022060 31 CDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERSI 99 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~-H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~~er~~ 99 (303)
++..|+||++.| .+|++ ++|+ |.||..||..|+.....||+|+.++...++.++..+.........
T Consensus 21 ~~~~CpI~~~~m--~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp TTTBCTTTCSBC--SSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred HhcCCcCccccc--cCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 478899999999 55554 5999 999999999999988899999999998888877666665554433
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=8.2e-12 Score=93.17 Aligned_cols=50 Identities=28% Similarity=0.663 Sum_probs=42.2
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhc-------CCCCCCCcccCcCCC
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPISLKD 83 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-------~~~CP~CR~~l~~~d 83 (303)
++..|+||++.| .+++. ++|+|.||..||..|+.. ...||+||..+...+
T Consensus 11 ~~~~C~IC~~~~--~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELL--TEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEEC--SSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCccc--CCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 478899999999 45544 699999999999999976 568999999987544
No 35
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=101.48 Aligned_cols=62 Identities=21% Similarity=0.443 Sum_probs=49.2
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCC-CCCCCcccCcCC-CcchHHHHHHHHH
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK-DATSQELLEAVEQ 95 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~-~CP~CR~~l~~~-d~~~~~l~e~~~~ 95 (303)
++..|+||++.| .+++ +++|+|.||..||..|+.... .||+||..+... .+..+..+..+..
T Consensus 77 ~~~~C~IC~~~~--~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 140 (150)
T 1z6u_A 77 QSFMCVCCQELV--YQPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLD 140 (150)
T ss_dssp HHTBCTTTSSBC--SSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred cCCEeecCChhh--cCCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 367899999999 4554 469999999999999998754 899999999876 5555555555544
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.12 E-value=3.5e-11 Score=92.27 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=51.2
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHHH
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~~ 95 (303)
++..|+||++.| .+|++ ++|||.||..||..|+.....||+|+..+...++.++..+.....
T Consensus 13 ~~~~CpI~~~~m--~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~ 74 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQ 74 (85)
T ss_dssp TTTBCTTTCSBC--SSEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred hheECcccCchh--cCCeE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHH
Confidence 478899999999 55555 589999999999999998889999999998877776655554443
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=3e-11 Score=87.28 Aligned_cols=53 Identities=25% Similarity=0.576 Sum_probs=41.7
Q ss_pred ccccccccc-cccCCC-CeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCCCc
Q 022060 32 DDACSICLE-EFSESD-PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (303)
Q Consensus 32 d~~C~ICle-~f~~~~-~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d~ 84 (303)
+..|+||++ .|.+.. ...+++|||.||..||..|+.. ...||+||+.+...++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 678999999 774322 1245799999999999999765 4679999999976654
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=91.07 Aligned_cols=51 Identities=27% Similarity=0.660 Sum_probs=42.8
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhc------CCCCCCCcccCcCCCc
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKDA 84 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~------~~~CP~CR~~l~~~d~ 84 (303)
++..|+||++.| .+++ .++|+|.||..||..|+.. ...||+||..+...++
T Consensus 18 ~~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELL--TQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCC--SSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCccc--CCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 378899999999 4554 4599999999999999976 6789999999876543
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=2.6e-11 Score=97.91 Aligned_cols=58 Identities=26% Similarity=0.637 Sum_probs=47.6
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHH
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~ 93 (303)
+..|+||++.| .+++.+.+|+|.||..||..|+. ..||+||..+...++..+..+..+
T Consensus 22 ~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l 79 (117)
T 1jm7_B 22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSM 79 (117)
T ss_dssp TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred CCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHH
Confidence 78899999999 56655559999999999999998 789999999977766655544443
No 40
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.09 E-value=1.2e-11 Score=100.75 Aligned_cols=51 Identities=24% Similarity=0.635 Sum_probs=1.0
Q ss_pred CccccccccccccCC---------------CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 31 CDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 31 ~d~~C~ICle~f~~~---------------~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.++.|+||++.|... ..+..++|+|.||..||..|+..+..||+||+.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 367899999999431 123446899999999999999999999999998754
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8e-11 Score=84.40 Aligned_cols=43 Identities=33% Similarity=0.845 Sum_probs=36.2
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHh---cCCCCCCC
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~---~~~~CP~C 75 (303)
.++..|+||++.| .+++. ++|+|.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL--QKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC--SSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchh--CCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3478899999999 45544 59999999999999997 45689998
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=5e-11 Score=96.66 Aligned_cols=55 Identities=31% Similarity=0.628 Sum_probs=45.6
Q ss_pred CCccccccccccccCC----CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022060 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~----~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
.++.+|+||++.|.+. ..+++++|+|.||..||..|+..+..||+||+.+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3478899999999432 234778999999999999999999999999999875543
No 43
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.2e-11 Score=89.55 Aligned_cols=54 Identities=30% Similarity=0.684 Sum_probs=44.0
Q ss_pred CCCCccccccccccccCCCCeeeccCC-----ccccHHhHHHHHhcC--CCCCCCcccCcCC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~-----H~Fc~~CI~~Wl~~~--~~CP~CR~~l~~~ 82 (303)
..+++..|.||++.|.+++++ +++|. |.||..||.+|+..+ ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 444577899999998665655 57996 999999999999765 4899999988643
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.5e-11 Score=94.90 Aligned_cols=50 Identities=36% Similarity=0.759 Sum_probs=41.8
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC---CCCCCCcccCcCCCc
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKDA 84 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~---~~CP~CR~~l~~~d~ 84 (303)
+..|+||++.| .+++. ++|+|.||..||..|+... ..||+||..+...++
T Consensus 21 ~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELI--KEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCC--SSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhh--cCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 67899999998 45544 6999999999999999865 489999999876543
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=7.7e-11 Score=95.20 Aligned_cols=61 Identities=18% Similarity=0.439 Sum_probs=48.0
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCC-CCCCCcccCcCCCcchHHHHHHHH
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~-~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
++..|+||++.| .++ +.++|+|.||..||..|+.... .||+||..+...+......+....
T Consensus 17 ~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i 78 (118)
T 3hct_A 17 SKYECPICLMAL--REA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (118)
T ss_dssp GGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCcCChhh--cCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHH
Confidence 378899999999 455 4569999999999999998765 999999999876655544444433
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=2.8e-10 Score=88.66 Aligned_cols=66 Identities=21% Similarity=0.445 Sum_probs=51.9
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcC------CCCCC--Cccc-CcCCCcchHHHHHHHHHHHh
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS------SQCPM--CWQP-ISLKDATSQELLEAVEQERS 98 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~------~~CP~--CR~~-l~~~d~~~~~l~e~~~~er~ 98 (303)
.+..|+||++.| .+|++...|+|.||..||..|+... ..||+ |++. +...++.++..+..+.....
T Consensus 6 ~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 6 SGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred cEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 378899999999 5666653599999999999999753 48999 9887 77777777766666555443
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=3.4e-11 Score=96.63 Aligned_cols=49 Identities=29% Similarity=0.681 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcC
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~ 81 (303)
.++..|+||++.| .++++ ++|+|.||..||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc--CceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3478899999999 55554 599999999999999976 6789999999853
No 48
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=79.86 Aligned_cols=42 Identities=36% Similarity=1.074 Sum_probs=35.0
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHh---cCCCCCCC
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~---~~~~CP~C 75 (303)
++..|+||++.| .++ ++++|+|.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYL--KEP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBC--SSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCccc--Ccc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 477899999999 455 4469999999999999954 46789998
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=3.5e-10 Score=85.55 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=41.2
Q ss_pred CCccccccccccccCCCCeeecc--CCccccHHhHHHHHhc-CCCCCCCcccCcCCC
Q 022060 30 SCDDACSICLEEFSESDPSTVTS--CKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~--C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d 83 (303)
+++.+|+||++.+...+ +..++ |||.||..||..|+.. ...||.||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 44789999999984323 33334 9999999999998854 568999999987554
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=8e-11 Score=94.56 Aligned_cols=50 Identities=38% Similarity=0.696 Sum_probs=42.7
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCCCc
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d~ 84 (303)
+..|+||++.| .+++ .++|+|.||..||..|+.. ...||+||..+...+.
T Consensus 23 ~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHIL--ADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBC--SSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHh--cCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 67899999999 4554 4699999999999999987 6789999999876554
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=6.7e-10 Score=83.37 Aligned_cols=49 Identities=24% Similarity=0.603 Sum_probs=41.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC--CCCCCCcccCcCC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~--~~CP~CR~~l~~~ 82 (303)
..+|.||++.|.. ......|+|.||..||.+||+.+ ..||+||..|...
T Consensus 15 i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 5679999999943 34556899999999999999877 7899999998654
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=3e-10 Score=91.98 Aligned_cols=56 Identities=30% Similarity=0.630 Sum_probs=46.3
Q ss_pred CCCccccccccccccC----CCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022060 29 DSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~----~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
++++..|+||++.|.. ......++|+|.||..||.+|++..+.||+||..+..++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 4457889999999853 1234677999999999999999999999999999976553
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=5.7e-10 Score=101.17 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCcCCCcchHHHHHHHHHHH
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQER 97 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~~~d~~~~~l~e~~~~er 97 (303)
...+..|+||++.| .+|++ ++|||.||..||..|+... ..||+||.++...++.++..+..+...-
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CCcccCCcCcCCHh--cCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 34578899999999 56554 5899999999999999764 4599999999888877776666655443
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.89 E-value=9.2e-10 Score=79.88 Aligned_cols=49 Identities=24% Similarity=0.555 Sum_probs=41.2
Q ss_pred CCCccccccccccccCCCCeeec--cCCcc-ccHHhHHHHHhcCCCCCCCcccCc
Q 022060 29 DSCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl--~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
++++.+|.||++.+ .+ +.++ +|+|. ||..|+..|......||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~--~~-~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRP--KN-GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSC--SC-EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCC--CC-EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34577899999997 33 3444 99999 899999999998899999999885
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=4.9e-10 Score=78.99 Aligned_cols=48 Identities=27% Similarity=0.528 Sum_probs=39.2
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
+.++..|+||++.| .++ ++++|+|.||..||..| ...||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~--~~p-~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEA--KCP-KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSC--BCC-SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCcc--CCe-EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 45578899999999 444 55699999999999774 66899999988654
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1e-09 Score=100.61 Aligned_cols=62 Identities=23% Similarity=0.505 Sum_probs=52.1
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC--CCCCC--CcccCcCCCcchHHHHHHHHH
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAVEQ 95 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~--~~CP~--CR~~l~~~d~~~~~l~e~~~~ 95 (303)
+..|+||++.| .+|++.+.|||.||..||..|+... ..||+ |++.+...++.++..+..+.+
T Consensus 181 el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve 246 (267)
T 3htk_C 181 ELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCK 246 (267)
T ss_dssp CSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHH
T ss_pred eeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHH
Confidence 66799999999 7888877999999999999999764 47999 999998888887766655443
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=7e-10 Score=92.81 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCC-CCCCCcccCc
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPIS 80 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~-~CP~CR~~l~ 80 (303)
+++..|+||++.| .++ +.++|+|.||..||..|+.... .||+||.++.
T Consensus 29 ~~~~~C~IC~~~~--~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhh--cCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3478999999999 555 4469999999999999998654 8999999764
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=92.96 Aligned_cols=61 Identities=18% Similarity=0.431 Sum_probs=47.8
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCcCCCcchHHHHHHHH
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
++..|+||++.| .+++ .++|+|.||..||..|+... ..||+||..+...+......++...
T Consensus 17 ~~~~C~IC~~~~--~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 17 SKYECPICLMAL--REAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp GGGBCTTTCSBC--SSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCCCChhh--cCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH
Confidence 478999999999 5554 46999999999999999764 4999999999876655444444433
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.78 E-value=3.3e-09 Score=76.69 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCCeeec--cCCcc-ccHHhHHHHHhcCCCCCCCcccCc
Q 022060 30 SCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl--~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+.+..|.||++.+ .+ ..++ +|+|. ||..|+..|.+....||+||+++.
T Consensus 5 ~~~~~C~IC~~~~--~~-~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RD-GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSB--SC-EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcC--CC-eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3467899999987 33 3344 99998 999999999988889999999885
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.77 E-value=3.6e-09 Score=92.10 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=52.5
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCcCCCcchHHHHHHHHHHH
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQER 97 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~~~d~~~~~l~e~~~~er 97 (303)
..+..|+||++.| .+|++ ++|||.||..||..|+... .+||+|+.++...++.++..+.......
T Consensus 104 p~~f~CPI~~elm--~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccC--CCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 4578899999999 55554 5999999999999999764 4699999999888888776666655444
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=4.5e-09 Score=101.35 Aligned_cols=48 Identities=27% Similarity=0.656 Sum_probs=41.3
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHh-cCCCCCCCcccCcCC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-~~~~CP~CR~~l~~~ 82 (303)
...|+||++.+ .+ +..++|+|.||..||..|+. ....||+||+.+...
T Consensus 332 ~~~C~ICle~~--~~-pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND--KD-VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB--CC-EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCC--CC-eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 46899999998 33 56679999999999999998 678999999988643
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=2e-09 Score=80.14 Aligned_cols=43 Identities=28% Similarity=0.714 Sum_probs=36.9
Q ss_pred ccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
+..|+||++.+ .+ +..++|+|. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~--~~-~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IA-IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CC-EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC--CC-EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 67899999998 44 455699999 999999998 789999998853
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-08 Score=75.96 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=35.6
Q ss_pred ccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
+..|+||++.+ .+ +.+++|+|. ||..|+.. ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~--~~-~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IA-IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CC-BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCC--CC-EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 67899999998 34 455799999 99999954 3789999998864
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.9e-08 Score=71.62 Aligned_cols=47 Identities=26% Similarity=0.539 Sum_probs=38.2
Q ss_pred CCCCccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.++++..|.||++.+ ..+.+++|+|. ||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 444578899999997 33667799999 99999974 4789999998854
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=3.9e-08 Score=76.08 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=37.0
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhc--------CCCCCC--Cccc
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPM--CWQP 78 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~--------~~~CP~--CR~~ 78 (303)
+..+|+||++.+.......+++|+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999999843332334579999999999999853 136999 9988
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.47 E-value=3e-08 Score=93.92 Aligned_cols=53 Identities=26% Similarity=0.612 Sum_probs=40.0
Q ss_pred CCCccccccccccccCCCCe---e--eccCCccccHHhHHHHHhcC-----------CCCCCCcccCcC
Q 022060 29 DSCDDACSICLEEFSESDPS---T--VTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISL 81 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~---~--vl~C~H~Fc~~CI~~Wl~~~-----------~~CP~CR~~l~~ 81 (303)
++...+|+||++.+.+...+ . .+.|+|.||..||.+|++.. ..||+||+++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34567899999998652221 1 24899999999999999752 359999998864
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.46 E-value=5e-08 Score=70.23 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=43.0
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcc
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~ 85 (303)
...|+||++.| .+|+...+|||.|+..||.+|+..+..||++++++...++.
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 35799999999 55544448999999999999998888899999999766643
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=1.3e-07 Score=67.97 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.8
Q ss_pred CCCCccccccccccccCCCCeeeccCC--c---cccHHhHHHHHhc--CCCCCCCcccCcC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCK--H---EFHLQCVLEWCQR--SSQCPMCWQPISL 81 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~--H---~Fc~~CI~~Wl~~--~~~CP~CR~~l~~ 81 (303)
+++++..|.||++.. +++. +++|. + .||..||.+|+.. +..||+|+..+..
T Consensus 2 e~~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 455678899999985 4444 56865 4 9999999999964 5789999998753
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.45 E-value=3.9e-08 Score=74.20 Aligned_cols=43 Identities=28% Similarity=0.635 Sum_probs=35.9
Q ss_pred ccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
+..|.||++.+ .+ +..++|+|. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~--~~-~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--IN-STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CC-EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCccc--Cc-EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 67899999997 33 566799999 999999877 389999998853
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.24 E-value=1.9e-07 Score=88.92 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=36.8
Q ss_pred ccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
+..|+||++.+ .+ +..++|+|. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~--~~-~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKE--VS-VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSB--CC-EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcC--Cc-eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 67899999998 44 455699999 999999988 789999998853
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.05 E-value=2.2e-06 Score=67.39 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=38.6
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcC
Q 022060 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~ 81 (303)
.|.+|--.+ ....++.+|+|.||.+|+..|.+. .+.||.|+.++..
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 488888887 455678899999999999999854 6899999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.66 E-value=3e-05 Score=70.08 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=41.1
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC--CCCCCCcccCcCCC
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~--~~CP~CR~~l~~~d 83 (303)
-..|.||.+.+. .......|+|.||..|+..|++.+ ..||.|+..|....
T Consensus 180 i~~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHh--CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 567999999984 345666699999999999999765 48999999886554
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.87 E-value=0.0028 Score=49.09 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=36.3
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
..|-.|+-..+ .-+.-..|.+|..|+...+..+..||+|++++..+
T Consensus 29 ~nCKsCWf~~k----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccChhhccccC----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 35999997752 23323459999999999999999999999998654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.51 E-value=0.0084 Score=46.09 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=25.8
Q ss_pred CccccccccccccCCCCe-eeccCCccccHHhHHHH
Q 022060 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~-~vl~C~H~Fc~~CI~~W 65 (303)
++..|.||++.+. ..++ ..+.|+|.||..|+..|
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHH
Confidence 4788999998642 2333 33899999999999984
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.15 E-value=0.071 Score=38.48 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=36.9
Q ss_pred cCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC----CCCCCCcccC
Q 022060 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (303)
Q Consensus 25 ~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~CR~~l 79 (303)
++.....+..|.||.+. ++-+..-.|...||..|+...+... -.||.|....
T Consensus 5 ~~~~~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 5 GQQNLAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTTCCCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cccCCCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 33334446679999865 4445556799999999998877653 3699997643
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.60 E-value=0.21 Score=35.20 Aligned_cols=50 Identities=20% Similarity=0.598 Sum_probs=35.2
Q ss_pred cCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCcc
Q 022060 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (303)
Q Consensus 25 ~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~ 77 (303)
...++..+..|.||.+. ++-+..-.|...||..|+..-+.. .-.||.|.+
T Consensus 4 ~~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CcccCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34456668889999874 333444678899999999875433 236999965
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.32 Score=46.42 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=44.0
Q ss_pred cccccccccccCCCCeeeccCCccccHHh--HHHHHhc--CCCCCCCcccCcCCCcchHHHHHHHH
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQC--VLEWCQR--SSQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~C--I~~Wl~~--~~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
+.|||-+..| ..|++...|.|.-|++- ++.+... .-.||+|.+.+...++.....+..+.
T Consensus 250 L~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 250 LQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp SBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred ecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 4599988888 78899999999966654 3333333 34699999999888887766555544
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.54 E-value=0.5 Score=44.86 Aligned_cols=60 Identities=15% Similarity=0.329 Sum_probs=43.8
Q ss_pred cccccccccccCCCCeeeccCCccccHHh--HHHHHhcC--CCCCCCcccCcCCCcchHHHHHHHH
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQC--VLEWCQRS--SQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~C--I~~Wl~~~--~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
+.|||-+..| ..|++...|.|.-|++- +..+.... -.||+|.+.+...++.....+..+.
T Consensus 216 L~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 216 LMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp SBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred eeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 4599988888 78899999999966544 33333333 4699999999888887666555554
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.53 E-value=0.71 Score=49.05 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCccccccccccccCCCCeeeccCC-ccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHHHH
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~-H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~~e 96 (303)
.++..|||-++.+ .+|++ ++-| +.|=..+|.+|+..+.+||.=|.++...+..++..+.....+
T Consensus 889 P~~F~cPIs~~lM--~DPVi-lpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 889 PDEFLDPLMYTIM--KDPVI-LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILC 953 (968)
T ss_dssp CGGGBCTTTCSBC--SSEEE-CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred cHHhCCcchhhHH--hCCeE-cCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 3467799999998 56555 5776 699999999999989999999999988877776655554433
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.03 E-value=0.52 Score=35.90 Aligned_cols=52 Identities=27% Similarity=0.533 Sum_probs=37.0
Q ss_pred cCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC----CCCCCCcccC
Q 022060 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (303)
Q Consensus 25 ~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~CR~~l 79 (303)
....++.+..|.||.+. ++-+..-.|.-.||..|+..-+... -.||.|...-
T Consensus 18 ~~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CCSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred ccccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 34456668889999975 4445556788999999997655432 3699997543
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.40 E-value=0.32 Score=41.46 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=34.0
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC----CCCCCCcccC
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~CR~~l 79 (303)
..++.|.||.+. ++-+..-.|...||..|+...+... -.||.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 347789999865 4444556799999999987665432 3699998654
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.06 E-value=1.4 Score=33.13 Aligned_cols=43 Identities=30% Similarity=0.626 Sum_probs=30.8
Q ss_pred CCccccccccccccCCCCeeeccC----CccccHHhHHHHHhcC-----CCCCCC
Q 022060 30 SCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQRS-----SQCPMC 75 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C----~H~Fc~~CI~~Wl~~~-----~~CP~C 75 (303)
...+.|.+|.+.+++ ...+ .| .|.||+.|-...+++. ..||.=
T Consensus 13 ~a~l~CtlC~erLEd--tHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLED--THFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSS--TTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhcc--Ccee-eCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 446789999999943 3333 44 5999999999888652 357764
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=81.61 E-value=0.4 Score=33.73 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=33.8
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCcccC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~~l 79 (303)
++..+..|.||.+. ++-+..-.|...||..|+..-+.. .-.||.|....
T Consensus 5 ~d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred ccCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34557889999864 343444579999999999754433 23699997643
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.24 E-value=0.23 Score=43.24 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=34.3
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC----CCCCCCcccC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~CR~~l 79 (303)
++..+..|.+|.+. ++-+..-.|...||..|+...+... -.||.|+..-
T Consensus 3 ~d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34557889999865 3323345788999999987665432 3699997643
No 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.26 E-value=1.5 Score=36.16 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=34.3
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHh-----------cCCCCCCCcc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-----------RSSQCPMCWQ 77 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-----------~~~~CP~CR~ 77 (303)
++..++.|.||.+- ++-+-.-.|-..||..||..-+. ..-.||.|+.
T Consensus 59 ~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46678899999976 44344457899999999986542 1236999974
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.63 E-value=0.57 Score=33.99 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCccccccccccccCCCC-eeeccCCccccHHhHHHHHh----cCCCCCCCcccCc
Q 022060 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQ----RSSQCPMCWQPIS 80 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~Wl~----~~~~CP~CR~~l~ 80 (303)
++...|.||..... +.. +..-.|...||..|+.--.. ..-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34556999987742 222 23357889999999864432 2346999976553
No 87
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.53 E-value=0.38 Score=33.88 Aligned_cols=49 Identities=22% Similarity=0.498 Sum_probs=32.3
Q ss_pred CCccccccccccccCCCC-eeeccCCccccHHhHHHHHh-----cCCCCCCCccc
Q 022060 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQP 78 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~Wl~-----~~~~CP~CR~~ 78 (303)
+++..|+||...+.+... +..-.|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 457789999988733332 23357889999999743221 34579999653
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.89 E-value=0.34 Score=34.56 Aligned_cols=48 Identities=23% Similarity=0.630 Sum_probs=33.3
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCccc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~~ 78 (303)
.+..+..|.||.+. ++-+..-.|...||..|+..-+.. .-.||.|...
T Consensus 4 ~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 4 AQKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 44568889999975 344455679999999998754432 2358888643
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.43 E-value=1 Score=35.09 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=32.2
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR 76 (303)
.+.+++.|.||.+.-...+-+.-..|...||..|+...+.. .-.||.|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 34568899999877311122455789999999999766532 23466653
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.30 E-value=0.3 Score=33.68 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=31.1
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcC----CCCCCCc
Q 022060 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCW 76 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~CR 76 (303)
+..+..|.||.+. ++-+..-.|...||..|+..-+... -.||.|.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4457889999975 3444556899999999987544322 2477774
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.77 E-value=5.9 Score=30.19 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=35.2
Q ss_pred CccccccccccccCCC--Cee--eccCCccccHHhHHH-HHhcCCCCCCCcccCc
Q 022060 31 CDDACSICLEEFSESD--PST--VTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~--~~~--vl~C~H~Fc~~CI~~-Wl~~~~~CP~CR~~l~ 80 (303)
....|.||-+.+.... .+. .-.|.--.|..|+.- +-.....||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3567999999974221 123 346888899999843 3455788999998875
No 92
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=73.69 E-value=2.1 Score=30.82 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCCCccccccccccccCCCCeeeccC-CccccHHhHHHH
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSC-KHEFHLQCVLEW 65 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C-~H~Fc~~CI~~W 65 (303)
.+++..-|.||.++- .++.+.| +-.||..|+.+.
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 344566799999883 3677899 799999997764
No 93
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.56 E-value=3.2 Score=31.36 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHH
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~W 65 (303)
..|+.|.||-..- ...-.-.--|+-.||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 3588999997332 1221222248899999999986
No 94
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.68 E-value=1.3 Score=31.22 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=29.8
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCC
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~C 75 (303)
..|--|...|.+........|++.||.+|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998432224468899999999943322344679987
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.75 E-value=1.9 Score=28.71 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=28.3
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCcc
Q 022060 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~ 77 (303)
.|.||...-...+-+..-.|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888865321223444679999999999654432 235999964
No 96
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=69.14 E-value=1.5 Score=33.69 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc---CCCCCCCcc
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~---~~~CP~CR~ 77 (303)
...| ||......+.-+..-.|...||..|+..-+.. ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 88776532222334678999999998542221 347999964
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=68.54 E-value=0.63 Score=32.41 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=31.8
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCccc
Q 022060 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~~ 78 (303)
..+..|.||... ++-+..-.|...||..|+..-+.. .-.||.|...
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 357789999875 444555689999999998754432 2258888543
No 98
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.53 E-value=4 Score=31.11 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=28.7
Q ss_pred CCCCccccccccccccCCCCeeecc--CC-ccccHHhHHHHHhc----CCCCCCCcccC
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~--C~-H~Fc~~CI~~Wl~~----~~~CP~CR~~l 79 (303)
+..+..-| ||..... +.-+..-. |. ..||..|+. +.. .-.||.|+..-
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 33445557 9998641 22122234 55 589999986 322 34799997643
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.71 E-value=1.8 Score=37.19 Aligned_cols=44 Identities=27% Similarity=0.624 Sum_probs=31.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCccc
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~~ 78 (303)
++.|.+|.+. ++-+..-.|...||..|+..-+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5679999965 444455678899999999654432 2369999764
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.11 E-value=4.9 Score=28.97 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=28.5
Q ss_pred CCCCccccccccccccCCCCee-ecc--CC-ccccHHhHHHHHhc----CCCCCCCcccC
Q 022060 28 QDSCDDACSICLEEFSESDPST-VTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~-vl~--C~-H~Fc~~CI~~Wl~~----~~~CP~CR~~l 79 (303)
+..+...| ||.... ...+. .-. |. ..||..|+. +.. .-.||.|+..-
T Consensus 12 d~~~~~~C-~C~~~~--~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCS--CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCC--CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 33445667 898864 22222 123 55 589999986 322 34699997654
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=58.54 E-value=7 Score=27.69 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=22.8
Q ss_pred CccccccccccccCCCCee-ec-cCCccccHHhH
Q 022060 31 CDDACSICLEEFSESDPST-VT-SCKHEFHLQCV 62 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~-vl-~C~H~Fc~~CI 62 (303)
....|.+|...+.+...++ .- .|.-.||..|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3567999999985444433 34 78999999996
No 102
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.28 E-value=0.87 Score=36.61 Aligned_cols=51 Identities=20% Similarity=0.494 Sum_probs=31.7
Q ss_pred CCCccccccccccccCC-CCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022060 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
+.+...|.+|...|..- ...+.-.||..||..|..........|-.|...+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 44456899999998432 2345678999999999766554456677775543
No 103
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=56.71 E-value=9.3 Score=25.53 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=27.6
Q ss_pred cccccccccccCCCCee-ec-cCCccccHHhHHH----HHhcCCCCCCCc
Q 022060 33 DACSICLEEFSESDPST-VT-SCKHEFHLQCVLE----WCQRSSQCPMCW 76 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~-vl-~C~H~Fc~~CI~~----Wl~~~~~CP~CR 76 (303)
-.|.||...+.++..+. .- .|...||..|+.- -......||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35789988874333332 24 5888999999631 113456799885
No 104
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.51 E-value=6.2 Score=29.64 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=26.9
Q ss_pred CCCccccccccccccCC-CCeeeccCCccccHHhHHHH
Q 022060 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~W 65 (303)
+.+...|.+|...|... ...+.-.||+.||..|...+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 33456799999998533 23556789999999996544
No 105
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.06 E-value=6.9 Score=28.47 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=30.2
Q ss_pred CccccccccccccCCCC-eeeccCCccccHHhHHHH---H--hcCCCCCCCcccC
Q 022060 31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEW---C--QRSSQCPMCWQPI 79 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~W---l--~~~~~CP~CR~~l 79 (303)
+..-| ||.....+... +..-.|...||..|+.-- . .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34456 99887632222 233578999999998421 1 1345799997654
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.91 E-value=9.1 Score=30.98 Aligned_cols=47 Identities=23% Similarity=0.558 Sum_probs=31.8
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHH------h-----cCCCCCCCcc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC------Q-----RSSQCPMCWQ 77 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl------~-----~~~~CP~CR~ 77 (303)
++..++.|.||.+- ++-+-.-.|-..||..||..-+ . ..=.|+.|+-
T Consensus 53 ~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35567789999976 2222234788999999998642 1 1236999954
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.84 E-value=6.9 Score=28.91 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCCCccccccccccccCC-CCeeeccCCccccHHhHHH
Q 022060 28 QDSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~ 64 (303)
.+++...|.+|...|..- .....-.|+..||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 344566899999999533 2345578999999999654
No 108
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=55.81 E-value=2.7 Score=36.01 Aligned_cols=47 Identities=17% Similarity=0.385 Sum_probs=32.2
Q ss_pred cccccccccccCCCC---e-eeccCCccccHHhHHH------HHh-----cCCCCCCCcccC
Q 022060 33 DACSICLEEFSESDP---S-TVTSCKHEFHLQCVLE------WCQ-----RSSQCPMCWQPI 79 (303)
Q Consensus 33 ~~C~ICle~f~~~~~---~-~vl~C~H~Fc~~CI~~------Wl~-----~~~~CP~CR~~l 79 (303)
..|+||...+.+.+. + ..-.|...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999998855432 2 3357899999999621 121 156899998754
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.68 E-value=0.92 Score=34.55 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----CCCCCCCcc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----~~~CP~CR~ 77 (303)
+..++..|.||...-....-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 33446789999976321122344578999999998643332 225888854
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.44 E-value=6.3 Score=31.50 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=26.3
Q ss_pred CCCccccccccccccCC-CCeeeccCCccccHHhHHH
Q 022060 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~ 64 (303)
+.+-..|.+|...|... ...+.-.||+.||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 44456799999998532 2356678999999999643
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.74 E-value=5.3 Score=31.27 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=31.7
Q ss_pred cCCCCCCccccccccccccCCCCeeec--cCCccccHHhHHHHHhcC----CCCCCCcccCcCC
Q 022060 25 GGIQDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQRS----SQCPMCWQPISLK 82 (303)
Q Consensus 25 ~~~~~~~d~~C~ICle~f~~~~~~~vl--~C~H~Fc~~CI~~Wl~~~----~~CP~CR~~l~~~ 82 (303)
.+.++..++.|.+|.+. ++-+..- .|...||..|+. +... -.||.|.-.+..+
T Consensus 8 ~~~~~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 8 TEPKQMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp --CCCSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCcCCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 33345568889999843 2212222 477899999986 4332 2588776555443
No 112
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.74 E-value=6.8 Score=32.58 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=30.7
Q ss_pred CccccccccccccC--CCCeeeccCCccccHHhHHHHHhcCC--CCCCCcc
Q 022060 31 CDDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQ 77 (303)
Q Consensus 31 ~d~~C~ICle~f~~--~~~~~vl~C~H~Fc~~CI~~Wl~~~~--~CP~CR~ 77 (303)
.+..|.+|...|.- ........|.|.+|..|-. |..... .|-+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 47889999998742 2335567899999999962 332221 3666654
No 113
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.63 E-value=7.2 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=25.5
Q ss_pred CCCCccccccccccccCC-CCeeeccCCccccHHhH
Q 022060 28 QDSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCV 62 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI 62 (303)
.|++-..|.+|...|..- ...+.-.||.+||..|.
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 344466899999998432 23455789999999984
No 114
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=53.19 E-value=1.1 Score=33.78 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=33.8
Q ss_pred CCCccccccccccccC-C-CCeeeccCCccccHHhHHHHHh--cCCCCCCCcccCcCCC
Q 022060 29 DSCDDACSICLEEFSE-S-DPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLKD 83 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~-~-~~~~vl~C~H~Fc~~CI~~Wl~--~~~~CP~CR~~l~~~d 83 (303)
.+++..|.||.+.-.. . +-+..-.|.-.||..|+..-+. ..-.||.|......++
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 4457889999975211 1 1123357888999999864321 2336999976554443
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=53.19 E-value=6.9 Score=28.76 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=26.2
Q ss_pred CCCccccccccccccCC-CCeeeccCCccccHHhHHH
Q 022060 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~ 64 (303)
+++...|.+|...|... .....-.||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44456799999999533 2345578999999999654
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.76 E-value=18 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=22.1
Q ss_pred ccccccccccc------cCCCCeeeccCCccccHHhHH
Q 022060 32 DDACSICLEEF------SESDPSTVTSCKHEFHLQCVL 63 (303)
Q Consensus 32 d~~C~ICle~f------~~~~~~~vl~C~H~Fc~~CI~ 63 (303)
...|.||+..- ..++-+.-..|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45799998752 111234557899999999994
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.63 E-value=5.4 Score=32.42 Aligned_cols=34 Identities=18% Similarity=0.468 Sum_probs=24.4
Q ss_pred CCcccccccccccc-CCC-CeeeccCCccccHHhHH
Q 022060 30 SCDDACSICLEEFS-ESD-PSTVTSCKHEFHLQCVL 63 (303)
Q Consensus 30 ~~d~~C~ICle~f~-~~~-~~~vl~C~H~Fc~~CI~ 63 (303)
..+..|.+|...|. ... ......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 34788999999993 212 23457899999988853
No 118
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=46.20 E-value=6.1 Score=27.53 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=32.1
Q ss_pred CCccccccccccccC--CCCeeeccCCccccHHhHHHHHh-------cCCCCCCCcccC
Q 022060 30 SCDDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQ-------RSSQCPMCWQPI 79 (303)
Q Consensus 30 ~~d~~C~ICle~f~~--~~~~~vl~C~H~Fc~~CI~~Wl~-------~~~~CP~CR~~l 79 (303)
.++..|.||...... ..-+..-.|...||..|+..-+. ..-.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 457889999976422 12233367889999999875331 234688886543
No 119
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.17 E-value=13 Score=35.57 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=34.4
Q ss_pred CCCCccccccccccccCCCCeeec--cCCccccHHhHHHHHhc----------CCCCCCCccc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQR----------SSQCPMCWQP 78 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl--~C~H~Fc~~CI~~Wl~~----------~~~CP~CR~~ 78 (303)
++..+..|.||-+- ++-+..- .|...||..||..++-. .=.|-+|.-.
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 45667889999876 3333444 78899999999998732 2369999644
No 120
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.34 E-value=10 Score=31.81 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=32.4
Q ss_pred CCCCccccccccccccCCCCeeec--cCCccccHHhHHHHHhcC----------CCCCCCcc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQRS----------SQCPMCWQ 77 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl--~C~H~Fc~~CI~~Wl~~~----------~~CP~CR~ 77 (303)
+|..+.-|.||-+- ++-+..- .|...||..||..++-.. =.|-+|.-
T Consensus 75 eDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 56667889999875 2212222 588999999999887431 25888854
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=45.10 E-value=5.9 Score=30.82 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=28.1
Q ss_pred ccccccccccCC-CCeeeccCCccccHHhHHHHHhcC----CCCCCCcc
Q 022060 34 ACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQ 77 (303)
Q Consensus 34 ~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~CR~ 77 (303)
.|.||.+.-.+. +-+..-.|...||..|+..-+... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887642111 223335788999999987655432 36999975
No 122
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.59 E-value=15 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=29.6
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHH---------HhcCCCCCCCccc
Q 022060 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW---------CQRSSQCPMCWQP 78 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~W---------l~~~~~CP~CR~~ 78 (303)
...-| ||........=+..-.|...||..|+.-- ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34557 89887632111233578999999997311 1246789999754
No 123
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.96 E-value=3.4 Score=28.90 Aligned_cols=37 Identities=22% Similarity=0.561 Sum_probs=24.1
Q ss_pred ccccccccccccCC---CCeeecc--CCccccHHhHHHHHhc
Q 022060 32 DDACSICLEEFSES---DPSTVTS--CKHEFHLQCVLEWCQR 68 (303)
Q Consensus 32 d~~C~ICle~f~~~---~~~~vl~--C~H~Fc~~CI~~Wl~~ 68 (303)
-..||-|.-.+.-. ..++... |++.||+.|+..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34588888777322 1234434 8888998888888654
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.69 E-value=9.7 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=25.1
Q ss_pred ccccccccccccCC-CCeeeccCCccccHHhHHH
Q 022060 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 32 d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~ 64 (303)
+..|.+|...|..- ...+.-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 56899999998532 3356678999999999543
No 125
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.82 E-value=5.4 Score=37.64 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCccccccccccccCC-CCeeeccCCccccHHhHHHHHhc-------CCCCCCCcccC
Q 022060 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPI 79 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~Wl~~-------~~~CP~CR~~l 79 (303)
+.+...|.+|...|... ...+.-.||+.||..|...++.. ...|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 33456799999998432 23456789999999998665421 23577775544
No 126
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.66 E-value=14 Score=26.46 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=23.9
Q ss_pred ccccccccccccCC-CCeeeccCCccccHHhHH
Q 022060 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVL 63 (303)
Q Consensus 32 d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~ 63 (303)
+..|.+|...|..- .....-.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35799999998532 234557899999999964
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.46 E-value=13 Score=27.74 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=24.5
Q ss_pred ccccccccccccCCC-CeeeccCCccccHHhHHH
Q 022060 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~ 64 (303)
...|.+|...|..-. ....-.||.+||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 557999999985332 245568999999999644
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.60 E-value=11 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=25.4
Q ss_pred ccccccccccccCC-CCeeeccCCccccHHhHHH
Q 022060 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 32 d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~ 64 (303)
+..|.+|...|..- ...+.-.||..||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 56899999998533 2356678999999999654
No 129
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.58 E-value=13 Score=28.74 Aligned_cols=48 Identities=23% Similarity=0.568 Sum_probs=31.3
Q ss_pred ccccccccccccCCCCeee-c-cCCccccHHhHH--H--H--H----hcCCCCCCCcccC
Q 022060 32 DDACSICLEEFSESDPSTV-T-SCKHEFHLQCVL--E--W--C----QRSSQCPMCWQPI 79 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~v-l-~C~H~Fc~~CI~--~--W--l----~~~~~CP~CR~~l 79 (303)
...|.||...+.+...... - .|...||..|+. . . + .....||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 3469999999744434333 3 688999999963 1 1 1 0345799997643
No 130
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=36.95 E-value=24 Score=25.26 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCCCcccccccccccc-CCCC-eeeccCCccccHHhHHHHHh--cCCCCCCCcc
Q 022060 28 QDSCDDACSICLEEFS-ESDP-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQ 77 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~-~~~~-~~vl~C~H~Fc~~CI~~Wl~--~~~~CP~CR~ 77 (303)
...++..|.||.+.-. +.+. +..-.|.-.||..|+..-.. ..-.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3455788999987531 1122 33357889999999864221 1235777753
No 131
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.76 E-value=10 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=20.6
Q ss_pred CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022060 46 DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 46 ~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.+.....||+.|. .-+.....||.|+.....
T Consensus 66 ~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred ECcChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 4567788999992 112334679999887643
No 132
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.46 E-value=24 Score=25.52 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCCccccccccccccCCCCeeec--cCCccccHHhHHHHH---------hcCCCCCCCccc
Q 022060 28 QDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWC---------QRSSQCPMCWQP 78 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl--~C~H~Fc~~CI~~Wl---------~~~~~CP~CR~~ 78 (303)
+.++...| ||-.....+.=+..- .|...||..|+.--- .....||.|+..
T Consensus 12 ~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 12 QPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp SCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 33445667 898874222112223 688999999984211 124579999654
No 133
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.41 E-value=7.8 Score=34.36 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=26.1
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhc-----CCCCCCCcc
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-----~~~CP~CR~ 77 (303)
..|.||...-..+.-+..-.|...||..|+..-+.. .=.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 358888764211223444579999999999854432 225999964
No 134
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.09 E-value=24 Score=24.81 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=29.5
Q ss_pred CCCcccccccccc-ccCCCCeeeccCCccccHHhHHHHHhcCC----CCCCCcc
Q 022060 29 DSCDDACSICLEE-FSESDPSTVTSCKHEFHLQCVLEWCQRSS----QCPMCWQ 77 (303)
Q Consensus 29 ~~~d~~C~ICle~-f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~----~CP~CR~ 77 (303)
..+...|.||+.. |-++.--...-|.-.||..|-..|-.+.+ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3447789999987 43333334456777888888665543322 2555543
No 135
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.49 E-value=8.3 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=28.1
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhc-----CCCCCCCcc
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-----~~~CP~CR~ 77 (303)
..|.||...-..++-+..-.|...||..|+..-+.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368888864211222333578899999999754432 235888864
No 136
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.27 E-value=3.4 Score=30.42 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=13.9
Q ss_pred cCCccccHHhHHHHHh
Q 022060 52 SCKHEFHLQCVLEWCQ 67 (303)
Q Consensus 52 ~C~H~Fc~~CI~~Wl~ 67 (303)
.|++.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999988844
No 137
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=33.92 E-value=15 Score=28.49 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.1
Q ss_pred cccHHhHHHHHhc
Q 022060 56 EFHLQCVLEWCQR 68 (303)
Q Consensus 56 ~Fc~~CI~~Wl~~ 68 (303)
-||.-|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 138
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=33.65 E-value=15 Score=28.40 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=10.8
Q ss_pred cccHHhHHHHHh
Q 022060 56 EFHLQCVLEWCQ 67 (303)
Q Consensus 56 ~Fc~~CI~~Wl~ 67 (303)
-||.-|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 139
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.63 E-value=5.2 Score=29.38 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=19.1
Q ss_pred ccCCccccHHhHHHHHhcC-----CCCCCCcc
Q 022060 51 TSCKHEFHLQCVLEWCQRS-----SQCPMCWQ 77 (303)
Q Consensus 51 l~C~H~Fc~~CI~~Wl~~~-----~~CP~CR~ 77 (303)
-.|...||..|+..-+... =.||.|+.
T Consensus 45 D~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 45 DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4688999999998655431 36888864
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=33.28 E-value=5.1 Score=27.83 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=24.7
Q ss_pred CCCccccccccccccCCCCee-ecc--CC-ccccHHhHHHHHhc----CCCCCCCcc
Q 022060 29 DSCDDACSICLEEFSESDPST-VTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQ 77 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~-vl~--C~-H~Fc~~CI~~Wl~~----~~~CP~CR~ 77 (303)
.++..-| ||.... ...+. .-. |. ..||..|+. +.. .-.||.|+.
T Consensus 7 ~~e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3445567 998864 22221 123 54 579999986 332 236888854
No 141
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.35 E-value=8.2 Score=26.69 Aligned_cols=43 Identities=26% Similarity=0.518 Sum_probs=25.4
Q ss_pred CCccccccccccccCCCCee-ecc--CC-ccccHHhHHHHHhc----CCCCCCCcc
Q 022060 30 SCDDACSICLEEFSESDPST-VTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQ 77 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~-vl~--C~-H~Fc~~CI~~Wl~~----~~~CP~CR~ 77 (303)
++..-| ||.+.. ...+. .-. |. ..||..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345567 998864 22222 123 65 589999986 322 336888854
No 142
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=31.19 E-value=25 Score=28.98 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCCCccccccccccccCCCC-eeeccCCccccHHhHHHH--H---hcCCCCCCCccc
Q 022060 28 QDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEW--C---QRSSQCPMCWQP 78 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~W--l---~~~~~CP~CR~~ 78 (303)
.+++...| ||.....+... +..-.|...||..|+.-- . ...-.||.|+..
T Consensus 4 ~~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 4 GSDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp ---CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34457779 99987522222 334578899999998421 1 224579999753
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=27.16 E-value=10 Score=27.09 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=25.7
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhc-----CCCCCCCcc
Q 022060 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-----~~~CP~CR~ 77 (303)
.|.||...-..+.-+.--.|...||..|+..-+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 35577643111111223468899999999754432 236998865
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.68 E-value=21 Score=27.62 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=26.2
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022060 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+..||+|..++... =++.+|..|-.. +.....||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHH
Confidence 47899999887321 134446666432 234567999988874
No 145
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.84 E-value=33 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=21.6
Q ss_pred cccccccccccC-------CCCeeeccCCccccHHhHHH
Q 022060 33 DACSICLEEFSE-------SDPSTVTSCKHEFHLQCVLE 64 (303)
Q Consensus 33 ~~C~ICle~f~~-------~~~~~vl~C~H~Fc~~CI~~ 64 (303)
..|.||+..-.. ++-+....|...||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 458999875311 12244568999999999864
No 146
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=42 Score=25.87 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=31.7
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022060 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
.|..|-..|.+........=+..||..|..+.+.....|-.|.++|....
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 47777777731111122345667888888776655557999988886543
No 147
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=25.44 E-value=5.9 Score=29.35 Aligned_cols=31 Identities=26% Similarity=0.680 Sum_probs=19.8
Q ss_pred cccccccccC---CCCeeeccCCccccHHhHHHH
Q 022060 35 CSICLEEFSE---SDPSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 35 C~ICle~f~~---~~~~~vl~C~H~Fc~~CI~~W 65 (303)
||-|-..+.. ...+....|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 7766554321 122455569999998887777
No 148
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.51 E-value=13 Score=27.64 Aligned_cols=49 Identities=16% Similarity=0.391 Sum_probs=31.4
Q ss_pred CccccccccccccC-CCC-eeeccCCccccHHhHHHHHh--------cCCCCCCCcccC
Q 022060 31 CDDACSICLEEFSE-SDP-STVTSCKHEFHLQCVLEWCQ--------RSSQCPMCWQPI 79 (303)
Q Consensus 31 ~d~~C~ICle~f~~-~~~-~~vl~C~H~Fc~~CI~~Wl~--------~~~~CP~CR~~l 79 (303)
.+..|.||...-.. ... +..-.|...||..|+..-+. ..-.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 46789999976321 122 33357899999999875443 123688886543
No 149
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.54 E-value=7.1 Score=36.10 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCccccccccccccCCCCee----eccCCccccHHhHHHHHhcCCCCCCCccc
Q 022060 30 SCDDACSICLEEFSESDPST----VTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~----vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~ 78 (303)
.....||+|-..-.-. -++ ...=.+.+|..|-.+|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3467899998764211 011 01123678899999998888899999664
No 150
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.48 E-value=20 Score=22.24 Aligned_cols=10 Identities=20% Similarity=0.746 Sum_probs=6.7
Q ss_pred cccccccccc
Q 022060 33 DACSICLEEF 42 (303)
Q Consensus 33 ~~C~ICle~f 42 (303)
-.||||+..|
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 4577777666
No 151
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.92 E-value=6.4 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.623 Sum_probs=19.5
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022060 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
..||+|...+..... +.+|..|-..+ .....||-|.+++
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~-~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDF-SLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEE-EEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccC-CCcccCcchhhHH
Confidence 568888877632211 22344443222 1222566666655
No 152
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.79 E-value=37 Score=23.96 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=28.8
Q ss_pred CccccccccccccCCCC-eeeccCCccccHHhHHHHH----hcCCCCCCCccc
Q 022060 31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWC----QRSSQCPMCWQP 78 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~Wl----~~~~~CP~CR~~ 78 (303)
+...| ||.....++.. +..-.|...||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 35568 79877532322 2335788999999974321 123568888653
Done!