Query 022061
Match_columns 303
No_of_seqs 103 out of 215
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7l_A Vacuolar ATP synthase s 100.0 2E-106 5E-111 784.2 33.3 296 2-300 8-310 (392)
2 3rrk_A V-type ATPase 116 kDa s 96.0 0.64 2.2E-05 43.4 19.1 158 120-297 99-268 (357)
3 2p22_C Protein SRN2; endosome, 58.7 5.8 0.0002 34.6 2.9 88 35-143 25-116 (192)
4 2a2f_X Exocyst complex compone 49.0 7 0.00024 36.6 2.0 121 63-185 14-153 (325)
5 2lci_A Protein OR36; structura 39.4 39 0.0013 26.5 4.6 71 184-268 55-125 (134)
6 3ghg_A Fibrinogen alpha chain; 37.9 29 0.00098 34.8 4.4 28 55-82 51-78 (562)
7 2zqm_A Prefoldin beta subunit 32.0 1E+02 0.0035 23.4 6.1 40 115-154 65-111 (117)
8 1ng7_A Poliovirus 3A-N, genome 28.4 24 0.00082 25.2 1.6 20 230-249 27-47 (60)
9 3htk_A Structural maintenance 28.0 1.4E+02 0.0048 20.1 6.2 37 117-153 2-38 (60)
10 4ioe_A Secreted protein ESXB; 26.9 1.7E+02 0.0059 20.8 6.7 81 47-146 9-89 (93)
11 3ghg_C Fibrinogen gamma chain; 26.6 3.2E+02 0.011 26.3 9.6 93 54-157 24-135 (411)
12 1m1j_C Fibrinogen gamma chain; 25.3 2E+02 0.007 27.6 8.0 29 54-82 24-52 (409)
13 3bj4_A Potassium voltage-gated 24.9 1.7E+02 0.0057 19.9 5.4 38 108-145 5-42 (49)
14 1fxk_A Prefoldin; archaeal pro 24.3 1.8E+02 0.006 21.7 6.1 43 114-156 59-101 (107)
15 3u0c_A Invasin IPAB, 62 kDa an 21.6 2.1E+02 0.007 24.6 6.3 38 120-157 96-133 (201)
No 1
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=100.00 E-value=1.6e-106 Score=784.16 Aligned_cols=296 Identities=31% Similarity=0.539 Sum_probs=284.1
Q ss_pred CCcEEEEeecCCCC----hHHHHHH-HHHHhccCCCCCCcccccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHH
Q 022061 2 ASRYWVVSLPVQNS----AASVWNR-LQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQ 76 (303)
Q Consensus 2 ~~~~wLvs~P~~~~----~~~~~~~-L~~~l~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~ 76 (303)
+++|||||+|.+++ ++++|+. |+..+++. .+.+++|+||+||+||||+||+|||||+|+|++||++++||+++
T Consensus 8 ~~~y~LvSlP~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~f~IP~lkvGTLDsLv~lsDdL~Kld~~ve~v~~Ki~~~ 85 (392)
T 1u7l_A 8 ANDFILISLPQNAQPVTAPGSKTDSWFNETLIGG--RAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEI 85 (392)
T ss_dssp CCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGG--TSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCCCccHHHHHHHHHHhhccCC--CCccccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999998643 4488987 88887754 47789999999999999999999999999999999999999999
Q ss_pred HHHhhcc-ccccccceeeCCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022061 77 IEELERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (303)
Q Consensus 77 ~~~l~~~-~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~R 155 (303)
+++++++ .+++.+++ +||+|+++||++|+||++|||.++||+||+++|++++++||+|+|+|+++||++|++|++++|
T Consensus 86 ~~~~~~~~~~~~~~~l-vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~R 164 (392)
T 1u7l_A 86 LQGLNETSTNAYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 164 (392)
T ss_dssp HHHTTSSCSSSCCSCC-BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhHHHHh-cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999875 45667888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccCcCCCCCCCcc-ccCCceEEEEEecCCChHHHHHHhccccCccccCCcccccccCCeeEEEEEEecccHH
Q 022061 156 KQSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVAD 234 (303)
Q Consensus 156 K~~GnL~~rsL~diV~~edfv-dsEyL~Tl~VvVPk~~~~ew~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~ 234 (303)
|++|||++|||++||+||||| |||||+|++|||||++++||+++||||++|||||||++|++|+||+||+||+|||+++
T Consensus 165 K~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~VtlFkk~~~ 244 (392)
T 1u7l_A 165 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ 244 (392)
T ss_dssp HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred ccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEEEEEEhhhHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHhhc
Q 022061 235 NFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFLHEIYSI 300 (303)
Q Consensus 235 eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~e~~~~~~~L~r~~~~~fse~f~awiHlK~l~ 300 (303)
+|+++|||+||+||||+|+|+.++++++|++++++++++++++|+|||++||||+|+|||||||||
T Consensus 245 eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalR 310 (392)
T 1u7l_A 245 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALR 310 (392)
T ss_dssp HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 2
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=96.00 E-value=0.64 Score=43.37 Aligned_cols=158 Identities=8% Similarity=-0.004 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhcCC-CcccccCcCCCCCCCccccCCceEEEEEe-cCCChH
Q 022061 120 EIVDGIHTLVAKIEDDLKVRVAEYNNVRSQ---LNAINRKQSG-SLAVRDLSNLVKPEDIITSEHLVTLLAVV-PKYSQK 194 (303)
Q Consensus 120 el~~~i~~~v~~id~dlk~k~~~Yn~~K~~---l~~l~RK~~G-nL~~rsL~diV~~edfvdsEyL~Tl~VvV-Pk~~~~ 194 (303)
+.++.+..++..+++.+...-+....++.. +..+.-= + +|- -+-++--+...| |+....
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~--~~~ld--------------~~~~~g~~~g~ip~~~~~~ 162 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL--AHGLD--------------ESPRLGVIPFLVAKPEELE 162 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTT--------------TCTTEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--hccCC--------------ccceeeeeeEEecChhhHH
Confidence 335556666666666666666666666665 5554322 2 332 244565566689 688888
Q ss_pred HHHHHhccccC-ccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeeecc------cCHHHHHHHHHHHHHH
Q 022061 195 DWLASYETLTS-YVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFE------YSSEAQESRNQELEKL 267 (303)
Q Consensus 195 ew~~~YEtL~~-~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~Re~kf~vRdF~------y~ee~~~~~~~e~~~l 267 (303)
.|.+..+..++ +++ ..+.+|.+++.+-|+.-+...++....|+..||..=++- --.+.+++.+++++.+
T Consensus 163 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l 238 (357)
T 3rrk_A 163 AVRKALQEALADRFV----LEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLA 238 (357)
T ss_dssp HHHHHHHHHHTTSCE----EEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEE----EEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHH
Confidence 99887776433 222 234667777666666668889999999999998766554 1124566788999999
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Q 022061 268 VHDQESLRSSLLQWCYTSYGEVCSTFLHEI 297 (303)
Q Consensus 268 ~~e~~~~~~~L~r~~~~~fse~f~awiHlK 297 (303)
+++..+....|.+++.....++-..+-.+.
T Consensus 239 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~ 268 (357)
T 3rrk_A 239 PEELVGIREEVARLSRESGEALIALWTRAK 268 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888776666555555443
No 3
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=58.65 E-value=5.8 Score=34.56 Aligned_cols=88 Identities=10% Similarity=0.194 Sum_probs=54.9
Q ss_pred CcccccCCC-CCCCChhhhHhhhhhh-HhhhhhHHHH--HHHHHHHHHHhhccccccccceeeCCCChhhhhcccccccc
Q 022061 35 PLYRFNIPN-LRVGTLDSLLALSDDL-VKSNSFVESV--SHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEA 110 (303)
Q Consensus 35 ~~~~f~iP~-fKvGTLDsLv~lsDeL-~K~D~~~e~~--v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~a 110 (303)
.+..|++|+ ++--|.+.|-.+.++= .+++.++... ++.+...+.++. ....++..
T Consensus 25 ~~~~~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~---------------------s~ae~ll~ 83 (192)
T 2p22_C 25 KSKNIPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFR---------------------DQFKQLEE 83 (192)
T ss_dssp -CCCCCCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred cccCCCCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 467899998 9999999999999998 8888887655 555555444442 22233334
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022061 111 KYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEY 143 (303)
Q Consensus 111 Kyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Y 143 (303)
+.|.-..++.-+.....++.+++...+.|.+.+
T Consensus 84 l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~ 116 (192)
T 2p22_C 84 NFEDLHEQKDKVQALLENARILESKYVASWQDY 116 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333344444444445555666665555444
No 4
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=48.98 E-value=7 Score=36.62 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccceeeCC-CChhhhhccccccc-----ccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 022061 63 NSFVESVSHKIRRQIEELERVSGIESSSLSVDG-VPVDTYLTRFVWDE-----AKYPTMSPLREIVDGIHTLVAKIEDDL 136 (303)
Q Consensus 63 D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~-~~~~~yl~~F~Wd~-----aKyp~~~~l~el~~~i~~~v~~id~dl 136 (303)
|.+.|-++++....+.+++.+++ ...+.|+. ...+..+..|.|.+ ..||..-|-..++=.+...+.+.-++.
T Consensus 14 d~Y~elLl~~~~~~f~~il~~D~--y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~ 91 (325)
T 2a2f_X 14 DHYNEVLLQRWVHVFREILDKEQ--FLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEFMYAC 91 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHHHHHH
Confidence 78899999999999999986543 67777766 45777779999965 568888888777777776666655554
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCcccccCcCC----CCC-----C---Ccc-ccCCceEEE
Q 022061 137 KVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNL----VKP-----E---DII-TSEHLVTLL 185 (303)
Q Consensus 137 k~k~~~Yn~~K~~l~~l~RK~~GnL~~rsL~di----V~~-----e---dfv-dsEyL~Tl~ 185 (303)
=.=...++.--+....+-||....|.+|.+++. +.. + +++ |.+||.+.+
T Consensus 92 ~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac 153 (325)
T 2a2f_X 92 MKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAG 153 (325)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 433333322223333444444444444433333 211 1 223 888887643
No 5
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=39.39 E-value=39 Score=26.50 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=48.1
Q ss_pred EEEEecCCChHHHHHHhccccCccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeeecccCHHHHHHHHHH
Q 022061 184 LLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQE 263 (303)
Q Consensus 184 l~VvVPk~~~~ew~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e 263 (303)
+++--.|...++-+.-.-.|.-.|. .+.+|.+ -.-.++|+.+....||-||...-|+++.+-.++-
T Consensus 55 liisndkqllkemlelisklgykvf-----lllqdqd---------eneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 55 LIISNDKQLLKEMLELISKLGYKVF-----LLLQDQD---------ENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEE-----EEEECSC---------HHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHhCceeE-----EEeecCc---------hhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 3444445555666655555554443 4456654 2356899999999999999999999988766665
Q ss_pred HHHHH
Q 022061 264 LEKLV 268 (303)
Q Consensus 264 ~~~l~ 268 (303)
..++.
T Consensus 121 mqkag 125 (134)
T 2lci_A 121 MQKAG 125 (134)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 55544
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.94 E-value=29 Score=34.76 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=22.1
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHhhc
Q 022061 55 LSDDLVKSNSFVESVSHKIRRQIEELER 82 (303)
Q Consensus 55 lsDeL~K~D~~~e~~v~Ki~~~~~~l~~ 82 (303)
|=.-|.|.|.=+...|.+|.+.+.++-.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 3356778888888899999998888843
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.97 E-value=1e+02 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 022061 115 MSPLREIVDGIHTLVAKIEDDL-------KVRVAEYNNVRSQLNAIN 154 (303)
Q Consensus 115 ~~~l~el~~~i~~~v~~id~dl-------k~k~~~Yn~~K~~l~~l~ 154 (303)
.++..+....|.+....|+..+ ......+++++.+|.++.
T Consensus 65 ~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665555555555555 455555555555555544
No 8
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=28.37 E-value=24 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.6
Q ss_pred cccH-HHHHHHHHHcCCeeee
Q 022061 230 GRVA-DNFRIAAREKGFQIRD 249 (303)
Q Consensus 230 kk~~-~eF~~~~Re~kf~vRd 249 (303)
|.+- ++.++.|+++||++-+
T Consensus 27 ksvds~eV~~YC~~kGwIiP~ 47 (60)
T 1ng7_A 27 QAVDSQEVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHCCHHHHHHHHHHTCCCCC
T ss_pred HcCCCHHHHHHHHHCCceecc
Confidence 4433 6889999999999853
No 9
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.01 E-value=1.4e+02 Score=20.14 Aligned_cols=37 Identities=14% Similarity=0.398 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022061 117 PLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAI 153 (303)
Q Consensus 117 ~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l 153 (303)
|+.+-+..+...+....+.++.+-..|..++.++.++
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666553
No 10
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=26.89 E-value=1.7e+02 Score=20.76 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=56.7
Q ss_pred CChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeeCCCChhhhhcccccccccCCCCCCHHHHHHHHH
Q 022061 47 GTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIH 126 (303)
Q Consensus 47 GTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~el~~~i~ 126 (303)
.|.+.|-..+.++...-..+++.+..+...+..|... -.|..-..|...|+ .+..-...+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~---------W~G~a~~af~~~~~----------~~~~~~~~~~ 69 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQ---------WAGATQAKFRGEFI----------QSKQAMQQYI 69 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------SCHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cCchhhHHHHHHHH----------HHHHHHHHHH
Confidence 4789999999999999999999999999999888531 13445555655441 2333445555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022061 127 TLVAKIEDDLKVRVAEYNNV 146 (303)
Q Consensus 127 ~~v~~id~dlk~k~~~Yn~~ 146 (303)
..+..|...|+.....|.++
T Consensus 70 ~~L~~i~~~L~~~A~~~~~~ 89 (93)
T 4ioe_A 70 PILEGISTDLKRIADKFRNT 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777777654
No 11
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.65 E-value=3.2e+02 Score=26.30 Aligned_cols=93 Identities=6% Similarity=0.137 Sum_probs=54.5
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeeCCCChhhhhc--ccccccccCCCCCC--------------
Q 022061 54 ALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLT--RFVWDEAKYPTMSP-------------- 117 (303)
Q Consensus 54 ~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~yl~--~F~Wd~aKyp~~~~-------------- 117 (303)
+++|-|.|...-|...+..+.+.+.++.+... ...+||+ +=.|..+.=+....
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts-----------~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTS-----------EVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 67899999999999999999888888864321 1222332 22344443332221
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 022061 118 ---LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQ 157 (303)
Q Consensus 118 ---l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~ 157 (303)
+..++......+..+...+....+.-++++..+++++.+-
T Consensus 93 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233333344445555555666666666777777776653
No 12
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.33 E-value=2e+02 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=21.9
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHhhc
Q 022061 54 ALSDDLVKSNSFVESVSHKIRRQIEELER 82 (303)
Q Consensus 54 ~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~ 82 (303)
+++|-|.|...-|..-++.+++.+.++..
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn 52 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 56777888888787777777777777754
No 13
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=24.86 E-value=1.7e+02 Score=19.95 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=28.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022061 108 DEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNN 145 (303)
Q Consensus 108 d~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~ 145 (303)
+..||+.+.+|..=+-.+.++++.+|.-|-.-...|+.
T Consensus 5 ~k~k~~~~~S~~~Rl~rVE~qV~~md~KLd~l~~~~~~ 42 (49)
T 3bj4_A 5 EKSKDRGSNTIGARLNRVEDKVTQLDQRLALITDMLHQ 42 (49)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999999999999985
No 14
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.35 E-value=1.8e+02 Score=21.66 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022061 114 TMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRK 156 (303)
Q Consensus 114 ~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK 156 (303)
..++..+....|.+....|+..++.....+..+...+..++.+
T Consensus 59 v~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 59 IRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888877777777777777766543
No 15
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=21.63 E-value=2.1e+02 Score=24.56 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 022061 120 EIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQ 157 (303)
Q Consensus 120 el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~ 157 (303)
+-+....++.+...++++.-...|+.++...+.+++|-
T Consensus 96 D~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKv 133 (201)
T 3u0c_A 96 DKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKI 133 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33445556778899999999999999999999999884
Done!