Your job contains 1 sequence.
>022062
MASNIYPHTLACTSKTTFRCPSNSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNK
NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVN
MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG
IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ
ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE
REM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022062
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CHY_2073 - symbol:CHY_2073 "UDP-N-acetylmuramoyl... 294 9.1e-26 1
TIGR_CMR|SPO_1183 - symbol:SPO_1183 "UDP-N-acetylmuramoyl... 261 5.4e-22 1
TIGR_CMR|BA_0246 - symbol:BA_0246 "UDP-N-acetylmuramoylal... 253 3.9e-21 1
TIGR_CMR|CBU_0124 - symbol:CBU_0124 "UDP-N-acetylmuramoyl... 251 5.9e-21 1
UNIPROTKB|Q9KPG3 - symbol:VC_2405 "UDP-N-acetylmuramoyl-t... 231 1.0e-18 1
TIGR_CMR|VC_2405 - symbol:VC_2405 "UDP-N-acetylmuramoylal... 231 1.0e-18 1
UNIPROTKB|P11880 - symbol:murF species:83333 "Escherichia... 199 4.4e-18 2
UNIPROTKB|Q48EF4 - symbol:murF "UDP-N-acetylmuramoyl-trip... 219 2.2e-17 1
TIGR_CMR|CPS_4469 - symbol:CPS_4469 "UDP-N-acetylmuramoyl... 219 3.0e-17 1
TIGR_CMR|SO_4223 - symbol:SO_4223 "UDP-N-acetylmuramoylal... 186 8.6e-14 2
UNIPROTKB|P0A5L4 - symbol:murF "UDP-N-acetylmuramoyl-trip... 186 2.7e-13 2
TIGR_CMR|GSU_3071 - symbol:GSU_3071 "UDP-N-acetylmuramoyl... 126 3.2e-05 1
>TIGR_CMR|CHY_2073 [details] [associations]
symbol:CHY_2073
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=ISS] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0770 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143
RefSeq:YP_360892.1 ProteinModelPortal:Q3AAE2 STRING:Q3AAE2
GeneID:3727096 KEGG:chy:CHY_2073 PATRIC:21277227
HOGENOM:HOG000268119 BioCyc:CHYD246194:GJCN-2072-MONOMER
Uniprot:Q3AAE2
Length = 458
Score = 294 (108.6 bits), Expect = 9.1e-26, P = 9.1e-26
Identities = 78/254 (30%), Positives = 124/254 (48%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ D HEF+ P+ KG GV+ V + Q+
Sbjct: 27 VSTDTRTLKPYA--LFVALHGEKLDGHEFV-PDAVAKGAAGVV---VERPFSINVTQIVV 80
Query: 109 NGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXXXMIALALESLGVNVFQSYGNW 168
+T +L +A Y R + A+ + NV + N+
Sbjct: 81 K---DTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLVKAVLRQKY--NVCATEKNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D ++ ++EMGM G GEI L ++ARP+I ++ N+G++HLE L S
Sbjct: 136 NNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQ 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++ARAK E+ + V ++N + P + + V+K FFG R G D+ + +
Sbjct: 196 ENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKKYFFGHRAG-DLYIKKFSQED 254
Query: 289 GGLGVQV--VLEKE 300
GL +LE+E
Sbjct: 255 DGLRFITAGILEEE 268
>TIGR_CMR|SPO_1183 [details] [associations]
symbol:SPO_1183
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009252 "peptidoglycan
biosynthetic process" evidence=ISS] [GO:0047480
"UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
activity" evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 RefSeq:YP_166430.1 ProteinModelPortal:Q5LU75
GeneID:3193363 KEGG:sil:SPO1183 PATRIC:23375673 OMA:HCVGPRM
ProtClustDB:CLSK933457 Uniprot:Q5LU75
Length = 464
Score = 261 (96.9 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 85/267 (31%), Positives = 125/267 (46%)
Query: 26 IWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT E AE+ G+ L W GI DTR +AP F A+T D H+F++ L
Sbjct: 3 LWTAAEAAEATGGRALGDWQVSGI-SIDTRTIAPG--DLFVALTAAR-DGHDFVAQAL-D 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGN-VNTLNSLVNMACYARNSRFXXXXXXXXXXXXX 143
KG + +++ +G V +G V+ + + + A +R
Sbjct: 58 KGAGAALVSRI----PEG-VGEDGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGK 112
Query: 144 XXXXXMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
M+A L + G S ++NN GV L+L + R + AV+E+GM+ GEI L
Sbjct: 113 TSTKEMLAAMLGAQG-RTHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPL 171
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-TV 262
AR ARP + +V V HLE+ + +AR K I + + G V VLNAD L
Sbjct: 172 ARQARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNADIAEADILRAA 231
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANG 289
RG R++ FG R D RL +VA+G
Sbjct: 232 ARGARQLSFG-RAAQDYRLTGVEVADG 257
>TIGR_CMR|BA_0246 [details] [associations]
symbol:BA_0246
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:198094 "Bacillus anthracis str. Ames"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HOGENOM:HOG000268119
RefSeq:NP_842799.1 RefSeq:YP_016852.1 RefSeq:YP_026517.1
HSSP:P11880 ProteinModelPortal:Q81VG1 DNASU:1086792
EnsemblBacteria:EBBACT00000011973 EnsemblBacteria:EBBACT00000015874
EnsemblBacteria:EBBACT00000023828 GeneID:1086792 GeneID:2818849
GeneID:2852828 KEGG:ban:BA_0246 KEGG:bar:GBAA_0246 KEGG:bat:BAS0232
ProtClustDB:CLSK886741 BioCyc:BANT260799:GJAJ-254-MONOMER
BioCyc:BANT261594:GJ7F-262-MONOMER Uniprot:Q81VG1
Length = 458
Score = 253 (94.1 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 73/242 (30%), Positives = 117/242 (48%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTL-NSLVNMACYARNSRFXXXXXXXXXXXX 142
G V + W K N V + ++L + A+N R
Sbjct: 63 N-GAVATL-------WVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114
Query: 143 XXXXXXM-IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
I +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP 263
VP
Sbjct: 234 VP 235
>TIGR_CMR|CBU_0124 [details] [associations]
symbol:CBU_0124
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:227377 "Coxiella burnetii RSA 493"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_819174.1
ProteinModelPortal:Q83F27 GeneID:1207995 KEGG:cbu:CBU_0124
PATRIC:17928933 ProtClustDB:CLSK913851
BioCyc:CBUR227377:GJ7S-129-MONOMER Uniprot:Q83F27
Length = 446
Score = 251 (93.4 bits), Expect = 5.9e-21, P = 5.9e-21
Identities = 73/229 (31%), Positives = 112/229 (48%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++E A+ VN + G + + TDTR + P F A+ G +FDA++FI+ + +
Sbjct: 4 LSEAAKIVNADLT--GEDTVFENVSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQ 58
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXX 145
G VG + N+V + V +TL +L +A Y R +
Sbjct: 59 GAVGAVVNRVVKT-TLPLIFVS-----DTLEALGRLARYQRE-QIPIPAIVVTGSCGKTT 111
Query: 146 XXXMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
++A G NV S ++NN +GV L+L+ + AVLE+G + GEI L
Sbjct: 112 TRALLASVFRQCG-NVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTG 170
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+A+P + ++ N G HLE GSLE VA+AKGEIF+ V+N DD
Sbjct: 171 LAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDD 219
>UNIPROTKB|Q9KPG3 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 231 (86.4 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 64/226 (28%), Positives = 110/226 (48%)
Query: 29 INEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+++++ +N +++ + + TD+R + P + F A+ G+ FDAH+F S + G G
Sbjct: 6 LSQLSSVLNARLIGEDRAVSAVSTDSRAI-PAE-ALFVALVGERFDAHDFASQAVTG-GA 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXX 147
V ++ + + V + + L S V+ C
Sbjct: 63 VALLVERELDAECSQLVVADTKQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVK 115
Query: 148 XMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN+NN +GV L+L+ D AV+E+G + GEI +
Sbjct: 116 EMVASILSQKG-QVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALV 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+P++ +V NV +HLE GS++ V RAKGEI+Q + G V ++N D
Sbjct: 175 KPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLD 220
>TIGR_CMR|VC_2405 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 231 (86.4 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 64/226 (28%), Positives = 110/226 (48%)
Query: 29 INEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+++++ +N +++ + + TD+R + P + F A+ G+ FDAH+F S + G G
Sbjct: 6 LSQLSSVLNARLIGEDRAVSAVSTDSRAI-PAE-ALFVALVGERFDAHDFASQAVTG-GA 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXX 147
V ++ + + V + + L S V+ C
Sbjct: 63 VALLVERELDAECSQLVVADTKQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVK 115
Query: 148 XMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN+NN +GV L+L+ D AV+E+G + GEI +
Sbjct: 116 EMVASILSQKG-QVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALV 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+P++ +V NV +HLE GS++ V RAKGEI+Q + G V ++N D
Sbjct: 175 KPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLD 220
>UNIPROTKB|P11880 [details] [associations]
symbol:murF species:83333 "Escherichia coli K-12"
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=IEA;IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0008766
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
-D-alanine ligase activity" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0008360 "regulation of cell shape"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0071555
"cell wall organization" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:X15432 EMBL:U67891
EMBL:U67893 PIR:F64730 RefSeq:NP_414628.1 RefSeq:YP_488391.1
PDB:1GG4 PDBsum:1GG4 ProteinModelPortal:P11880 SMR:P11880
DIP:DIP-10281N IntAct:P11880 MINT:MINT-1227223 PRIDE:P11880
EnsemblBacteria:EBESCT00000003335 EnsemblBacteria:EBESCT00000003336
EnsemblBacteria:EBESCT00000003337 EnsemblBacteria:EBESCT00000003338
EnsemblBacteria:EBESCT00000015539 GeneID:12932648 GeneID:944813
KEGG:ecj:Y75_p0085 KEGG:eco:b0086 PATRIC:32115277 EchoBASE:EB0617
EcoGene:EG10622 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI ProtClustDB:PRK10773
BioCyc:EcoCyc:UDP-NACMURALGLDAPAALIG-MONOMER
BioCyc:ECOL316407:JW0084-MONOMER
BioCyc:MetaCyc:UDP-NACMURALGLDAPAALIG-MONOMER SABIO-RK:P11880
BindingDB:P11880 ChEMBL:CHEMBL2540 EvolutionaryTrace:P11880
Genevestigator:P11880 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 Uniprot:P11880
Length = 452
Score = 199 (75.1 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 49/126 (38%), Positives = 68/126 (53%)
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
M A L G N + GN NN +GV ++L+ + D AV+E+G + +GEI + R
Sbjct: 117 MTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTR 175
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
PE +V N+ +HLE GSL VA+AKGEIF + ++NAD+ N G RK
Sbjct: 176 PEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRK 235
Query: 269 VFFGWR 274
V WR
Sbjct: 236 V---WR 238
Score = 70 (29.7 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 28 TINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEF 77
T++++ + +NG++ + TDTR L P F A+ G+ FDAH+F
Sbjct: 5 TLSQLTDILNGELQGADITLDAVTTDTRKLTPGC--LFVALKGERFDAHDF 53
>UNIPROTKB|Q48EF4 [details] [associations]
symbol:murF
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=ISS] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 RefSeq:YP_276234.1 ProteinModelPortal:Q48EF4
STRING:Q48EF4 GeneID:3555860 KEGG:psp:PSPPH_4112 PATRIC:19977689
ProtClustDB:CLSK868642 Uniprot:Q48EF4
Length = 456
Score = 219 (82.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 57/206 (27%), Positives = 93/206 (45%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P Q F A+TG FD HE++ ++ KG VG + + + V
Sbjct: 28 VSTDSRGIQPG--QLFVALTGPRFDGHEYLE-QVAAKGAVGALVEREVQGASLPQLVV-- 82
Query: 109 NGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXXXMIALALESLGVNVFQSYGNW 168
++T +L + RN+ M+A L + G V + GN
Sbjct: 83 ---LDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRGT-VLATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + AV+E+G S GEI + +P + ++ N G +H+ G
Sbjct: 139 NNELGVPLTLLELASEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGP 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ + AKGEI + VLN +D
Sbjct: 199 DKIVEAKGEILEGLNASGTAVLNLED 224
>TIGR_CMR|CPS_4469 [details] [associations]
symbol:CPS_4469
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] [GO:0047480
"UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
activity" evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0770
HOGENOM:HOG000268120 KO:K01929 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 RefSeq:YP_271117.1
ProteinModelPortal:Q47VQ5 STRING:Q47VQ5 GeneID:3520386
KEGG:cps:CPS_4469 PATRIC:21471771 OMA:CINLALF
BioCyc:CPSY167879:GI48-4478-MONOMER Uniprot:Q47VQ5
Length = 513
Score = 219 (82.2 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 63/207 (30%), Positives = 104/207 (50%)
Query: 52 DTRILAPNKNQW--FFAITGQHFDAHEFISPELYGKGC-VGVIGNQVCNNWDKGFVQVEG 108
D+R + + ++ F A+ G +FD H F + ++ +GC + ++ + + D + V
Sbjct: 39 DSRAIKEHSDKCSAFLALKGPNFDGHRF-AEQVIKQGCQLLIVDHHLSAVTDTAQLIVS- 96
Query: 109 NGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXXXMIALALESLGVNVFQSYGNW 168
+T +L +A + + M+A L LG V + GN+
Sbjct: 97 ----DTRIALGKIAAFVKKE-VAPKTVGITGSSGKTTVKEMVAAILSRLG-KVLATNGNF 150
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + D AV+EMG + GEI + +P++ V+ N+ +HLE G L
Sbjct: 151 NNDIGVPLTLLRLDNSHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDL 210
Query: 229 EDVARAKGEIFQESKLGD--VCVLNAD 253
VARAKGEIF S LG+ V + N D
Sbjct: 211 CGVARAKGEIF--SGLGENGVALYNKD 235
>TIGR_CMR|SO_4223 [details] [associations]
symbol:SO_4223
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:211586 "Shewanella oneidensis MR-1"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_719751.1
ProteinModelPortal:Q8E9P4 GeneID:1171827 KEGG:son:SO_4223
PATRIC:23528084 ProtClustDB:CLSK907557 Uniprot:Q8E9P4
Length = 460
Score = 186 (70.5 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 48/142 (33%), Positives = 74/142 (52%)
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
MIA L S V + GN+NN +GV L+L+ + V E+G + KGEI + + R
Sbjct: 117 MIATIL-SAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVR 175
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVR 267
P + +V NVG +HLE GS VA+AK EI+ + ++NADD + V + +
Sbjct: 176 PHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYK 235
Query: 268 KVFFGWRRGCDVRLVAAQVANG 289
++ F + G R + +A G
Sbjct: 236 QLSFSQQEGAAKRQIDV-IATG 256
Score = 49 (22.3 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+ +D+R + P F A+ G FD H+F + + G + ++
Sbjct: 27 LSSDSRKIGPAT--LFVALKGDRFDGHDFAATAIEN-GAIALL 66
>UNIPROTKB|P0A5L4 [details] [associations]
symbol:murF
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0051301 GO:GO:0008360 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842578
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0770 HOGENOM:HOG000268120
KO:K01929 OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 PIR:A70580
RefSeq:NP_216673.1 RefSeq:NP_336686.1 RefSeq:YP_006515576.1
ProteinModelPortal:P0A5L4 SMR:P0A5L4 PRIDE:P0A5L4
EnsemblBacteria:EBMYCT00000003752 EnsemblBacteria:EBMYCT00000072617
GeneID:13316968 GeneID:887826 GeneID:924245 KEGG:mtc:MT2216
KEGG:mtu:Rv2157c KEGG:mtv:RVBD_2157c PATRIC:18126630
TubercuList:Rv2157c ProtClustDB:CLSK791663
BioCyc:MetaCyc:MONOMER-15227 Uniprot:P0A5L4
Length = 510
Score = 186 (70.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 50/122 (40%), Positives = 64/122 (52%)
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++A L LG V G++NN +G +++ R D +LEM G I LA +A
Sbjct: 146 LMAAVLAPLG-EVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAP 204
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRG 265
P I VVLNVG +HL GS E +A+ K E+ Q VLNADDP VA LT R
Sbjct: 205 PSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARV 264
Query: 266 VR 267
VR
Sbjct: 265 VR 266
Score = 46 (21.3 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 28 TINEIAESVNGKILKWGPP--------GIICTDTRILAPNKNQWFFAITGQHFDAHE 76
T+ +IAE V G + P G + D+R + P F A+ G D H+
Sbjct: 5 TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGG--LFLALPGARADGHD 59
>TIGR_CMR|GSU_3071 [details] [associations]
symbol:GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:243231 "Geobacter sulfurreducens PCA" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 RefSeq:NP_954113.1
ProteinModelPortal:Q748D4 GeneID:2686310 KEGG:gsu:GSU3071
PATRIC:22028993 ProtClustDB:CLSK829090
BioCyc:GSUL243231:GH27-3020-MONOMER Uniprot:Q748D4
Length = 452
Score = 126 (49.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 33/95 (34%), Positives = 48/95 (50%)
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN N + + L+ AVD V+E+ LE R RP + V+LN+ + HL+
Sbjct: 141 GNIGNPL---IELVETGAAVDRVVVEISSFQ----LEWIRSFRPTVAVLLNITEDHLDRY 193
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+ ++ AK IF+ D VLN DDP+VA L
Sbjct: 194 ATYQEYIDAKARIFKNQTASDWAVLNVDDPIVAGL 228
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 285 0.00085 115 3 11 22 0.50 33
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 613 (65 KB)
Total size of DFA: 218 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.69u 0.15s 21.84t Elapsed: 00:00:01
Total cpu time: 21.69u 0.15s 21.84t Elapsed: 00:00:01
Start: Sat May 11 03:41:59 2013 End: Sat May 11 03:42:00 2013