BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022062
(303 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
Length = 510
Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 217/279 (77%), Gaps = 9/279 (3%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
SP+WT++EIAE+VNG I++ GPPG ICTDTR L P QWFFAI G++FDAHEFI+PEL
Sbjct: 49 SPLWTVDEIAEAVNGTIVQRGPPGPICTDTRTLEPG--QWFFAIRGENFDAHEFITPELG 106
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KGCVGVIGN VC NWDKGFV++ G TL SL MA YARN +F G LVGVTGS GK
Sbjct: 107 HKGCVGVIGNWVCPNWDKGFVEMGGE----TLTSLEKMANYARN-KFHGCLVGVTGSAGK 161
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT++MIAL LESLG+ V Q++GN NNR+GV LSLIGI + V VLE+GM +GEI+EL
Sbjct: 162 TTTRTMIALTLESLGL-VHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMEL 220
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR ARP IRV+LNVG +HLE+ SLE+VA AKGEI E+K GDVCVLNADDPLV +L VP
Sbjct: 221 ARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVP 280
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
GV+KV FG R CDVR A +V +GG GV+VVLE+ E
Sbjct: 281 HGVKKVLFGQRLECDVRFAAEKV-HGGHGVRVVLERNHE 318
>gi|225463627|ref|XP_002271742.1| PREDICTED: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase-like [Vitis vinifera]
Length = 771
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 217/279 (77%), Gaps = 9/279 (3%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
SP+WT++EIAE+VNG I++ GPPG ICTDTR L P QWFFAI G++FDAHEFI+PEL
Sbjct: 310 SPLWTVDEIAEAVNGTIVQRGPPGPICTDTRTLEPG--QWFFAIRGENFDAHEFITPELG 367
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KGCVGVIGN VC NWDKGFV++ G TL SL MA YARN +F G LVGVTGS GK
Sbjct: 368 HKGCVGVIGNWVCPNWDKGFVEMGGE----TLTSLEKMANYARN-KFHGCLVGVTGSAGK 422
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT++MIAL LESLG+ V Q++GN NNR+GV LSLIGI + V VLE+GM +GEI+EL
Sbjct: 423 TTTRTMIALTLESLGL-VHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMEL 481
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR ARP IRV+LNVG +HLE+ SLE+VA AKGEI E+K GDVCVLNADDPLV +L VP
Sbjct: 482 ARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVP 541
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
GV+KV FG R CDVR A +V +GG GV+VVLE+ E
Sbjct: 542 HGVKKVLFGQRLECDVRFAAEKV-HGGHGVRVVLERNHE 579
>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 606
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 189/275 (68%), Gaps = 9/275 (3%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W + IA +V+GK+L G G ICTDTR + QWF A+TG +FD H F+ + K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAGSICTDTRTM--RAGQWFLALTGHNFDGHSFLY-QACEK 172
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
C GV+ N V + W +GFVQVEG+ TL++L +A R +RF G +VG+TGSVGK+T
Sbjct: 173 QCAGVVANWVPHGWSRGFVQVEGD----TLDALQALASDVR-ARFWGPVVGLTGSVGKTT 227
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
++M LAL+ L +V Q+ GN+NN +GVAL+L+ ++ VLE+GM+ GEILELA
Sbjct: 228 ARAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELAN 287
Query: 206 MARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
A+P++RV+LNVG +H+E+ G LE+VA AKGEIF+ ++ GD+C++NADDPL + +P
Sbjct: 288 TAKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDPLAMAVPLPA 347
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299
GVR V FG + G D+RLVAA+ N G G+ V+LE
Sbjct: 348 GVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEH 382
>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
Length = 606
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 189/275 (68%), Gaps = 9/275 (3%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W + IA +V+GK+L G G ICTDTR + QWF A+TG +FD H F+ + K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAGSICTDTRTM--RAGQWFLALTGHNFDGHSFLY-QACEK 172
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
C GV+ N V + W +GFVQVEG+ TL++L +A R +RF G +VG+TGSVGK+T
Sbjct: 173 QCAGVVANWVPHGWSRGFVQVEGD----TLDALQALASDVR-ARFWGPVVGLTGSVGKTT 227
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
++M LAL+ L +V Q+ GN+NN +GVAL+L+ ++ VLE+GM+ GEILELA
Sbjct: 228 ARAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELAN 287
Query: 206 MARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
A+P++RV+LNVG +H+E+ G LE+VA AKGEIF+ ++ GD+C++NADDPL + +P
Sbjct: 288 TAKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDPLAMAVPLPA 347
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299
GVR V FG + G D+RLVAA+ N G G+ V+LE
Sbjct: 348 GVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEH 382
>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
Length = 515
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 185/275 (67%), Gaps = 10/275 (3%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
IW +IA++V G + K G PG ICTDTR + ++ WF A+ G++FD + F++ L
Sbjct: 49 IWDCQQIAQAVGGILAKQGSPGSICTDTRGI--HRGDWFLALVGRNFDGNSFLAQAL-AA 105
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
GC G IG + +W GFV+V ++L +L +A ARN R+ G +VG+TGS GK+T
Sbjct: 106 GCAGAIGRSMPTDWPVGFVEVS-----DSLAALHKLAVDARN-RYRGHVVGITGSCGKTT 159
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK+M+ALALESLG ++ Q+ G+ NN +GV L+L+ + V+EMGM+ GEILEL+R
Sbjct: 160 TKAMVALALESLG-HIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSR 218
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P +RVVLNVG +H+E+LGSLE VA AKGE+F++S GDVC+LNADDPLV + V
Sbjct: 219 ICKPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPD 278
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
FFG D+RL+ +V +GG GV+ L+++
Sbjct: 279 AMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQ 313
>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
Length = 515
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 185/275 (67%), Gaps = 10/275 (3%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
IW +IA++V G + K G PG ICTDTR + ++ WF A+ G++FD + F++ L
Sbjct: 49 IWDCQQIAQAVGGILAKQGSPGSICTDTRGI--HRGDWFLALVGRNFDGNSFLAQAL-AA 105
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
GC G IG + +W GFV+V ++L +L +A ARN R+ G +VG+TGS GK+T
Sbjct: 106 GCAGAIGRSMPRDWPVGFVEVS-----DSLAALHKLAVDARN-RYRGHVVGITGSCGKTT 159
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK+M+ALALESLG ++ Q+ G+ NN +GV L+L+ + V+EMGM+ GEILEL+R
Sbjct: 160 TKAMVALALESLG-HIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSR 218
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P +RVVLNVG +H+E+LGSLE VA AKGE+F++S GDVC+LNADDPLV + V
Sbjct: 219 ICKPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPD 278
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
FFG D+RL+ +V +GG GV+ L+++
Sbjct: 279 AMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQ 313
>gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 624
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 157/251 (62%), Gaps = 13/251 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHE-FISPELYG 84
++T ++IA + G +++ G + TDTR +A K WF A+ G+ DAHE F++ EL
Sbjct: 80 VFTASDIASATGGTLVRDAAAGSVTTDTRDVAGGK--WFLALVGETRDAHEEFVNDELQN 137
Query: 85 KGCVGVIGNQVC-NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRF--SGVLVGVTGSV 141
CVGVI ++ +W KG+VQ + +L +A R+ RF V+VGVTGSV
Sbjct: 138 TECVGVISSRPPPGSWRKGYVQTA----CDPTTALQRLASDVRD-RFPPDVVVVGVTGSV 192
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TT+++ A AL SLGV V Q+ GN+NN VG+ L+L+ V VLE+GMS GEI
Sbjct: 193 GKTTTRALTARALASLGV-VHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALGEIS 251
Query: 202 ELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++ARP +R+V V +HL + G + VARAK E+F + GDVCV+NADD VA +
Sbjct: 252 TLAKIARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADDEHVAGM 311
Query: 261 TVPRGVRKVFF 271
T+P GVR V F
Sbjct: 312 TIPDGVRVVTF 322
>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulolyticum H10]
gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulolyticum H10]
Length = 459
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 149/263 (56%), Gaps = 14/263 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ +E+ E+V GK+L WG PGI + TD+R + K+ F + G+ FD H++I
Sbjct: 4 FNCSELIEAVGGKLL-WGKPGINFYGVTTDSRKVT--KDNLFIPLIGEKFDGHDYIEQCF 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
V + Q+ + V+ +T +L ++A + R +F +VG+TGSVG
Sbjct: 61 NAGATVCLTSKQIPTVTGCTAILVD-----DTAKALRDLAAWYRR-KFDIPVVGITGSVG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK M++ L S V ++ GN+NN +G+ L++ ID + + AV+EMGMSG GEI
Sbjct: 115 KTSTKDMVSCVL-SQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISR 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L +ARP I ++ N+G SH+E LGS E + +AK EI +E + VLN DDPL+++L
Sbjct: 174 LTAIARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKG 233
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQ 285
R VF+G G D + Q
Sbjct: 234 KLSFRTVFYGMNVGSDYTALNYQ 256
>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
australiensis 50-1 BON]
gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
australiensis 50-1 BON]
Length = 464
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 152/266 (57%), Gaps = 13/266 (4%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T++E+ E+ G+++ KW + TD+R + P Q F A+ G+ +D H+FI +
Sbjct: 4 TVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPG--QLFIALIGERYDGHDFIDNAV-T 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G V+ ++ +WD ++VE +TL +L +A Y R F +V +TGS GK+
Sbjct: 61 NGASAVMLSKDTADWDIPIIKVE-----DTLEALKRLAAYYRR-MFYLTVVAITGSSGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK I A+ S NV ++ GN NN++G+ L++ I+ AVLEMGMS GEI +LA
Sbjct: 115 TTKEFI-YAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLA 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ARP I V+ N+G SH+E LG+ +++ RAK E+F DV VLN DDPL+ L
Sbjct: 174 DIARPHIGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTLHSVL 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGG 290
R ++F R D++++ ++ G
Sbjct: 234 PCRVLYFSTRGKGDIKVLNIRLYKNG 259
>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
propionicus DSM 2379]
gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pelobacter propionicus DSM 2379]
Length = 469
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 145/250 (58%), Gaps = 12/250 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQVE 107
+ TD+R +A Q F + G+ FD H+FI P++ KG V+ +Q + G V
Sbjct: 26 VSTDSRTVA--AGQLFVPLRGERFDGHDFI-PQVAAKGVAAVLADQSFDGEIPPGLTVVR 82
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
V+TL +L ++A R RF LVG+TGS GK+TTK M+A LE G + ++ GN
Sbjct: 83 ---VVDTLVALGDLAAAYRR-RFDLPLVGITGSNGKTTTKEMLATILEQTGPGL-KTAGN 137
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +G+ L +D + AVLEMGMS GEI LA +A P+ +VLN +HLES+GS
Sbjct: 138 LNNLIGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAAPQTGIVLNACPAHLESMGS 197
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+E VARAKGE+ G ++NADDPL+A P GVR++ FG DVR A ++
Sbjct: 198 VEGVARAKGELLLRLPAGGCAIINADDPLIAGQPSPPGVRRLTFGLGD-ADVR--ATEIT 254
Query: 288 NGGLGVQVVL 297
+ G+G Q L
Sbjct: 255 SLGIGGQSFL 264
>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 466
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 154/272 (56%), Gaps = 17/272 (6%)
Query: 32 IAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+ +S+ GK+L I+ D+R + P FFA G+ D H+F+ + + G
Sbjct: 8 VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPG--YLFFAFKGESSDGHDFLE-DAWKNGAA 64
Query: 89 GVIGNQ----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
VI ++ K + V +TL++L ++A R S F+ +V VTGSVGK+
Sbjct: 65 AVIVSRGDCLTKAGPGKSLILVN-----DTLDALQDLAAAYRRS-FNIPVVAVTGSVGKT 118
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK ++AL L+S ++ GN+NN +G+ L+L+ +D+ +AVLEM M G+GE+L+LA
Sbjct: 119 STKDILALCLQS-RFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLA 177
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A+P ++ NV HLE+LGSLE++ARAK E+ GD ++N D PL+ P
Sbjct: 178 TIAQPSSALISNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSPLLEEAVRPY 237
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV 296
+K FG+ + CD R+ + N G+ ++++
Sbjct: 238 AAKKYRFGYSKSCDFRIEETIIKNQGIEIRLI 269
>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
potens JR]
gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
potens JR]
Length = 458
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 148/250 (59%), Gaps = 12/250 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA ++ +++K + +CTD+R + P F A+ G+ FDAH+F+ L
Sbjct: 4 MTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPG--SLFVALKGERFDAHDFVEQALQ 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G GVI +++ ++ G + + + TL +L +A Y R +FSG +V VTGS GK
Sbjct: 62 -LGAHGVIVSRMQHDLPDGDILLVDD----TLTALQQLARYNR-KKFSGPVVAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI+ LE+ + V ++ GN+NN +G+ L+L+G+D + V+EMGM G GEI L
Sbjct: 116 TTTKDMISALLETKYL-VLKTLGNFNNEIGLPLTLLGLDESHGAVVVEMGMRGLGEIDFL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A P V+ N+G++HLE LG++E++ARAK E+ +G VLN DDP
Sbjct: 175 ARIACPTAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVLNGDDPWQRKYAHL 234
Query: 264 RGVRKVFFGW 273
+ +F+G
Sbjct: 235 TRAKVIFYGM 244
>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
bemidjiensis Bem]
gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
bemidjiensis Bem]
Length = 469
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 151/265 (56%), Gaps = 14/265 (5%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T+NEIAE+ G+++ G + TD+R +AP + F A+ G+ FD H+FI P +
Sbjct: 3 MFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPG--ELFVALRGERFDGHDFIIPAV- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + +W +G G V +TL +L ++A Y R RF+ V VTGS
Sbjct: 60 SKGVTIFLAEE---SWAAKHELPKGAGAVLVPDTLRALGDLAAYHRR-RFNLKTVCVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M+A L G + ++ GN NN +G+ L++ + AV E+GMS GEI
Sbjct: 116 NGKTTTKEMLARILAQTGPGL-KTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P++ ++ N +HLE+LGS+E VARAKGE+F K G V V N DDPLV+
Sbjct: 175 DRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTC 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQ 285
V ++ FG RG +V + Q
Sbjct: 235 PTHLNVTRLTFGL-RGAEVSSASIQ 258
>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
Nor1]
gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
Nor1]
Length = 259
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 145/257 (56%), Gaps = 12/257 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T++E+ +V G ++ I I TDTR L F A++G+ FD HEF+ +
Sbjct: 4 FTVSEVCLAVKGSLIGGSAGAIFTGISTDTRTL--KAGDLFIALSGERFDGHEFLH-QAV 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G GV+ ++ G V + +T +L N+AC+ R RF ++ VTGS GK
Sbjct: 61 AQGAAGVLISRRDIVIPSGIAVVLTD---DTRKALQNLACFHR-LRFDIPVIAVTGSNGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M A L S V ++ N+NN +G+ L+L+ + +AV+EMGM KGEI EL
Sbjct: 117 TTTKDMTAAVLAS-RFKVLKTEANYNNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIREL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +A P + VV NVG++H+E LGSLE++A AK E+ + + G + +LNAD+P V +
Sbjct: 176 AEVALPTVGVVTNVGETHIELLGSLENIASAKAELVENIQEG-LVILNADNPYVYAMRSK 234
Query: 264 RGVRKVFFGWRRGCDVR 280
+FFG DVR
Sbjct: 235 TKAAVIFFGLNSQADVR 251
>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
papyrosolvens DSM 2782]
gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
papyrosolvens DSM 2782]
Length = 459
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 146/255 (57%), Gaps = 20/255 (7%)
Query: 31 EIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
E+AE+V GK+L WG P + + TD+R + K F + G+ FD H++I +
Sbjct: 8 ELAEAVTGKLL-WGEPDVTFFGVTTDSRKVT--KASLFIPLIGEKFDGHDYI------EQ 58
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
C G VC K +V G V +T +L ++A + R +F +VG+TGSVGK
Sbjct: 59 CFKA-GASVCLT-SKPIPEVAGCSAVLVDDTAKALRDLAAWHRK-KFDIPVVGITGSVGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK M++ L S +V ++ GN+NN +G+ L+++ ID + + AV+EMGMSG GEI L
Sbjct: 116 TSTKDMVSCVL-SQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ARP+I ++ N+G SH+E LGS E + +AK EI + + VLN DDPL+ L
Sbjct: 175 TAIARPDIAIITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGK 234
Query: 264 RGVRKVFFGWRRGCD 278
R V +G G D
Sbjct: 235 LPFRTVLYGMHGGSD 249
>gi|375085838|ref|ZP_09732460.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Megamonas funiformis YIT 11815]
gi|374566323|gb|EHR37568.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Megamonas funiformis YIT 11815]
Length = 463
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 158/270 (58%), Gaps = 14/270 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+++ ++ ++ N + K + + TDTR + + F A+ G++FD H+FI+ +
Sbjct: 6 FSLTQVMQATNAILKKLTSASVFGGVTTDTRKI--EEGMLFIALKGENFDGHDFIA-DAA 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQ---VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG +G I N+ ++D ++ ++ +TL + ++A + R +F+ ++ +TGS
Sbjct: 63 KKGAIGAIVNK---DYDISLIEDIDIDILAVDDTLKAYQDLAHFWR-KKFNIPVIAITGS 118
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK + A L S NV ++ N+NN +G+ ++L+ +D + D+AV+EMGM G G+I
Sbjct: 119 NGKTTTKDLTAAVL-SGKYNVLKTQANFNNEIGLPMTLLQLDGSYDVAVVEMGMRGLGQI 177
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
EL +A+P + V+ NVG++H+E LGS+E++A+AKGE+ Q ++ +LNADD V+ +
Sbjct: 178 KELTDIAKPTMGVITNVGETHMELLGSMENIAKAKGEMAQAIEINGNVILNADDEFVSKM 237
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
++FG D++ + N G
Sbjct: 238 NRLTKAHAIYFGINHAGDIKAFDIKTVNDG 267
>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
uraniireducens Rf4]
gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacter uraniireducens Rf4]
Length = 468
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 146/258 (56%), Gaps = 21/258 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++TI+EI E+ G + G + + TD+R +A + F A+ G+ FD H+++ +
Sbjct: 1 MFTIDEIIEATGGTRIGSGNDAVSGVSTDSRQVA--AGELFVALKGERFDGHDYLEAAV- 57
Query: 84 GKGCVGVI-------GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+G + G Q N D +V V +TL +L ++A + R SRF LVG
Sbjct: 58 ARGVRAFLVAADRLAGKQPPN--DVIYVAVP-----DTLRALGDLAAWHR-SRFDLPLVG 109
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK+TTK M+A L G ++ GN NN +G+ L L+ + + AVLEMGMS
Sbjct: 110 ITGSNGKTTTKEMLATILAQTGPG-LKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSE 168
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
GEI LA MA P I V+ N +HLES+GS+E VA+AKGE+F K V NADDPL
Sbjct: 169 PGEIDRLAEMANPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDPL 228
Query: 257 VANLTVPRGVRKVFFGWR 274
++ P GV+++ FG R
Sbjct: 229 ISRCPAPAGVKRLSFGLR 246
>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M21]
gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M21]
Length = 467
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 150/265 (56%), Gaps = 14/265 (5%)
Query: 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T+NEIAE+ G+++ G + TD+R +AP + F A+ G+ FD H+FI P +
Sbjct: 1 MFTLNEIAEATGGRMIGEGAGEASAVSTDSRQVAPG--ELFVALRGERFDGHDFIIPAV- 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
G+ +W + +G G V +TL +L ++A Y R RF+ V VTGS
Sbjct: 58 ---SQGITVFLAEESWAERHELPKGAGAVLVPDTLRALGDLAAYHRR-RFNLKTVCVTGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M+A L G + ++ GN NN +G+ L++ + AV E+GMS GEI
Sbjct: 114 NGKTTTKEMLARILAQTGPGL-KTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P++ ++ N +HLE+LGS+E VARAKGE+F K G V V N DDPLV+
Sbjct: 173 DRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSAC 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQ 285
V ++ FG RG +V + Q
Sbjct: 233 PTHLNVTRLTFGL-RGAEVSSASIQ 256
>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
alkaliphilus AHT 1]
gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
alkaliphilus AHT 1]
Length = 461
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 147/280 (52%), Gaps = 17/280 (6%)
Query: 27 WTINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ EI+E+V GK+ G G + D+R + P +F + G+H D H FI+
Sbjct: 1 MTLREISEAVGGKLPAAGDLDKKIGRVSIDSRDIGPG--DFFVPLAGEHTDGHRFIAAAA 58
Query: 83 YGKG--CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
C V + + VE + +L +++ + R +F +V VTGS
Sbjct: 59 EKGAAGCFAAFSKNVTHPEGMTVISVE-----DPEQALQDLSAFYRR-KFQLPVVAVTGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK MIA AL S + ++ GN NN +GV L L +D + AVLEMGMSG GEI
Sbjct: 113 VGKTTTKDMIAAAL-SPELKTLKTEGNLNNHLGVPLMLTRLDSTYEAAVLEMGMSGYGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++A P + V+ N+G+SHLE LGS E +ARAK E+ V V+NAD+PL+
Sbjct: 172 DLLAKLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHLAADGVAVVNADEPLLVPH 231
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
G R + FG+ VR + N G + ++E+E
Sbjct: 232 IKGLGCRVITFGFDEHATVR--CTDIINDEAGKRAIIEQE 269
>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcaceae bacterium D16]
gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcaceae bacterium D16]
Length = 461
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 153/274 (55%), Gaps = 22/274 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIIC-----TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ ++ E+V+G +L + TD+R + P F + G+ FD H +I+ L
Sbjct: 5 TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPG--SLFIPLVGERFDGHAYITSAL 62
Query: 83 YGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + +V ++ DK ++QV NT +L ++A + ++ RF VG+TGS
Sbjct: 63 EA-GAAGCLTARVRTDYREDKFYIQVG-----NTERALRDLAAWYKD-RFQIPFVGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+T K MIA L S+ V ++ GN+NN +G+ L+L+ +D + VLEMGM GEI
Sbjct: 116 VGKTTAKDMIAAVL-SVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVAN 259
L+ + RPE+ V+ N+GD+H+E LGS E++ +AK E+ K + VLNADDP++
Sbjct: 175 DYLSDIVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTT 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293
L V+ VF G D R AQV GG GV
Sbjct: 235 LRGKTPVQAVFCGKAEDADYR---AQV-TGGDGV 264
>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium thermocellum ATCC 27405]
gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 2360]
gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum JW20]
gi|385778591|ref|YP_005687756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 1313]
gi|419723581|ref|ZP_14250696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum AD2]
gi|419724594|ref|ZP_14251656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum YS]
gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum ATCC 27405]
gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 2360]
gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum JW20]
gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 1313]
gi|380772141|gb|EIC05999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum YS]
gi|380780263|gb|EIC09946.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum AD2]
Length = 457
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 135/233 (57%), Gaps = 11/233 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD-KGFVQVE 107
I TD+R + + F + G+ FD H +I+ L G +G + + + K ++V
Sbjct: 29 ISTDSRNI--KQGDLFIPLIGERFDGHNYIASALE-HGALGSLTQKETEPFPGKVLIKVS 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L ++A Y R +F VG+TGSVGK++TK M+A L S G V ++ GN
Sbjct: 86 -----DTLKALRDLAVYYRQ-KFKIPFVGITGSVGKTSTKEMVAAVL-SKGFKVLKNQGN 138
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV L++ +D++ + AV+EMGMSG GEI L + +P+I ++ N+G SH+E LGS
Sbjct: 139 FNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIAIITNIGVSHIEKLGS 198
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
++ +AK EIF+ + +LN DD L+ L R VF+G G D+R
Sbjct: 199 KNNILKAKMEIFEGLNEKGLAILNGDDKLLYGLNNLLKFRTVFYGMEEGLDLR 251
>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dictyoglomus thermophilum H-6-12]
gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dictyoglomus thermophilum H-6-12]
Length = 465
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 148/257 (57%), Gaps = 14/257 (5%)
Query: 28 TINEIAESVNGKILK---WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ +I ++ G ++K I TD+R + K+ F A+ G+ FD HEF+ +
Sbjct: 6 TVEDILKATKGILIKGNFKDKVDSISTDSRNI--KKDDVFIALKGEKFDGHEFVKDAIL- 62
Query: 85 KGCVGVIGNQVCNNWDKGFV-QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG GVI ++ N DK F+ +V+ +TL +L ++A Y + + ++G+TGS GK
Sbjct: 63 KGAKGVIVSRDVNLEDKAFIIKVQ-----DTLKALQDIANYYLKT-LNAKVIGITGSSGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK+++ L+ +G V+ S N+NN +GV LS++ ++ VD VLEM M GKGEI L
Sbjct: 117 TTTKNLVGRLLKLIG-KVYVSKENFNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A P+I V+ N+G +H+ LGS E + AK EIF K + +LN DD +
Sbjct: 176 SKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYER 235
Query: 264 RGVRKVFFGWRRGCDVR 280
++K FG+ G D+R
Sbjct: 236 LHIKKYTFGFEEGSDLR 252
>gi|404493852|ref|YP_006717958.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Pelobacter
carbinolicus DSM 2380]
gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Pelobacter
carbinolicus DSM 2380]
Length = 463
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 139/251 (55%), Gaps = 16/251 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R L F + G FD H+FI+ + G V + +V ++V
Sbjct: 28 VSTDSRSL--RAGDLFVPLRGPRFDGHDFIAQAVQ-SGAVACLSEEVIAGLPVPVIRV-- 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA--LALESLGVNVFQSYG 166
+TL +L ++A R + F G +V VTGS GK+TTK M+A LAL G ++ G
Sbjct: 83 ---TDTLRALGDLAAAVRQA-FDGPVVAVTGSSGKTTTKEMLAGILALRGEG---LKTEG 135
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ +L ++ AVLE+GMS +GEI LA ++RP+I V+ NVG +HLE+L
Sbjct: 136 NFNNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDIGVITNVGPAHLETLH 195
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+L+ VARAKGE+F G V+N DDP V L V GVR++ +G G D + A +
Sbjct: 196 NLQGVARAKGELFAALPAGGTAVINGDDPRVLQLPVANGVRRLIYGC--GSDAEVRAEDI 253
Query: 287 ANGGLGVQVVL 297
A G G L
Sbjct: 254 AVDGHGTHFCL 264
>gi|404371430|ref|ZP_10976735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium sp. 7_2_43FAA]
gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium sp. 7_2_43FAA]
Length = 453
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++NE+ E++NG+++ G +C DTR + KN +FAI G+ F+ ++F+ E +
Sbjct: 3 LSLNELLEAMNGELIVKGKTDFNSVCIDTRKIE--KNNIYFAINGERFNGNKFV-IEAFS 59
Query: 85 KGCVGVIGNQVC---NNWD--KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG I +++ NN D + ++VE +T +L+N+A Y R + ++GVTG
Sbjct: 60 KGASIAIVDEILFDLNNTDNLQTVIKVE-----DTEKALLNLANYYR-KKLGLKVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA A S VF++ GN+NN++G+ L ++ +D ++D+AVLEMGMS GE
Sbjct: 114 SCGKTSTKDLIA-AFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
I LA ARP+I V+ N+G SH+E+L + E++ +AK EIF + ++N +D
Sbjct: 173 IDVLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDE 228
>gi|427707215|ref|YP_007049592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7107]
gi|427359720|gb|AFY42442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7107]
Length = 453
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 126/209 (60%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTRIL P + F A+ G++FD H+FI P GK + I + N D +QV+
Sbjct: 33 IQTDTRILQPG--EVFLALRGENFDGHDFI-PTAIGKSALAAIVDFDYENSDFPVLQVK- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + R+ RF ++GVTGSVGK+TTK +I L + G V ++YGN+
Sbjct: 89 ----NTLAAYQTIARWWRD-RFDIPVIGVTGSVGKTTTKELITAVLSTQG-RVHKTYGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ +D + AV+EM M GKG+I EL + RP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELDAEHNYAVIEMAMRGKGQIAELTHIVRPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
+A AK E+ E V +LN D+PL+
Sbjct: 203 AAIAEAKCELLAEMPHDGVAILNHDNPLL 231
>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
turgidum DSM 6724]
gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
turgidum DSM 6724]
Length = 459
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 146/260 (56%), Gaps = 20/260 (7%)
Query: 28 TINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ +I E+ NG ++K I TDTR + N+++ F A+ G+ FD H+F+ +
Sbjct: 6 TVEDILEATNGVLIKGDIREKVDSISTDTRNI--NEDEVFIALKGEKFDGHDFVKDAIL- 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG G+I ++ + VEGN V +TL +L ++A Y R + ++GVTGS
Sbjct: 63 KGVKGIIISRE--------IAVEGNIFVIRVQDTLKALQDIANYYRR-KLKTKVIGVTGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK++I L +G + S N+NN +GV LS++ + VD VLEM M KGEI
Sbjct: 114 SGKTTTKNLIGKLLSIVG-KTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++A P+I V+ N+G +H+ LGS E + AK EIF+ K V +LN DDP +
Sbjct: 173 SLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRI 232
Query: 261 TVPRGVRKVFFGWRRGCDVR 280
++K FG+ D+R
Sbjct: 233 YEKLKIKKYTFGFDERSDLR 252
>gi|374296731|ref|YP_005046922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium clariflavum DSM 19732]
gi|359826225|gb|AEV68998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium clariflavum DSM 19732]
Length = 460
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 147/259 (56%), Gaps = 14/259 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I EI ++V+GK+L I TD+R++ +F + G+ FD H++I
Sbjct: 3 ILKCKEIVKAVDGKLLSGSLEAEFSNITTDSRVV--KNGDFFIPLVGEKFDGHDYILSS- 59
Query: 83 YGKGCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ KG G + ++ + D K ++VE +TL +L +A Y R +F VG+TGSV
Sbjct: 60 FEKGAAGCLTHRDMSGVDGKIVIKVE-----DTLAALRKLAAYYR-QKFDIPFVGITGSV 113
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ L S NV ++ GN+NN +GV L++ ++ + AV+EMGMSG GEI
Sbjct: 114 GKTSTKDMVYSVL-SQKYNVLRTQGNFNNEIGVPLTVFNLESYHEAAVVEMGMSGLGEIS 172
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L + RP+I ++ N+G SH+E LGS +++ RAK EI + K + +LN DD L++ L
Sbjct: 173 RLTSIVRPDIAIITNIGLSHIEKLGSRQNILRAKMEILEGLKDNGLVILNGDDNLLSGLK 232
Query: 262 VPRGVRKVFFGWRRGCDVR 280
R VF+G G D +
Sbjct: 233 GLLKHRTVFYGMEDGLDYQ 251
>gi|376260795|ref|YP_005147515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. BNL1100]
gi|373944789|gb|AEY65710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. BNL1100]
Length = 459
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 143/259 (55%), Gaps = 14/259 (5%)
Query: 31 EIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
E+AE+V GK+L WG P + TD+R + K+ F + G+ FD H++I
Sbjct: 8 ELAEAVAGKLL-WGEPDRTFYGVTTDSRKVT--KDSLFIPLIGEKFDGHDYIEQCFKAGA 64
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + Q+ V V+ +T +L ++A + R +F +VG+TGSVGK++T
Sbjct: 65 SVCLTSKQILPVAGCSAVLVD-----DTAKALRDLATWHRR-KFDIPVVGITGSVGKTST 118
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K M++ L S V ++ GN+NN +G+ L+++ ID + + AV+EMGMSG GEI L +
Sbjct: 119 KDMVSCVL-SQKYCVLKTQGNFNNEIGLPLTVLNIDNSHETAVIEMGMSGFGEISRLTAI 177
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A P I ++ N+G SH+E LGS E + +AK EI + + VLN DDPL+ L
Sbjct: 178 AIPRIVIITNIGVSHIEKLGSQEGILKAKLEILEGLNKDGLVVLNGDDPLLKPLKGKLPF 237
Query: 267 RKVFFGWRRGCDVRLVAAQ 285
R VF+G G D + Q
Sbjct: 238 RTVFYGMNSGSDYTALNYQ 256
>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M18]
gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M18]
Length = 469
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 148/260 (56%), Gaps = 16/260 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T+ EIAE+ G+++ ++C TD+R +AP + F + G+ FD H+FI+
Sbjct: 3 MFTLQEIAEATGGRLIGEAQ-AVVCAVSTDSRQVAPG--ELFVPLKGERFDGHDFITTA- 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTG 139
G+G + + +W G V +TL +L ++A + R RF LV VTG
Sbjct: 59 AGRGVTAFL---MAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRR-RFDLKLVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L G + ++ GN NN +G+ L+L + AV+E+GMS GE
Sbjct: 115 SNGKTTTKEMLARILAQTGPGL-KTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA +A P++ ++ N +HLE+LGS+E VARAKGE+F K G V V N DDPLV++
Sbjct: 174 IDRLAEIADPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDPLVSS 233
Query: 260 LTVPRGVRKVFFGWRRGCDV 279
V ++ FG RG +V
Sbjct: 234 CPTHLNVTRLTFGL-RGAEV 252
>gi|333896891|ref|YP_004470765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333112156|gb|AEF17093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 457
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 144/256 (56%), Gaps = 16/256 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I T+ EI ++ GK+L G I I TD+R + P F + G+ F+ +FI
Sbjct: 2 ILTVKEILDATEGKLLS-GDINICVSGISTDSRTIKPG--DLFIPLKGERFNGEKFIDDA 58
Query: 82 LYGKGCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
L G + + C D K + VE +T ++L +A Y R S+F+ + VTGS
Sbjct: 59 L-NVGSASLTESTNCIRHDNKPIIFVE-----DTKDALHRIAKYYR-SKFNIPFIAVTGS 111
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MI L S+ NV ++ GN+NN +G+ L+L ++ D+AV+EMGMSG GEI
Sbjct: 112 SGKTTTKDMIYDVL-SMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEI 170
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P + V N+G +H+E LGS E++ +AK E+ ++ K GD V+NADD ++ +
Sbjct: 171 RRLKNIASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKM 230
Query: 261 TVPRGVRKVFFGWRRG 276
+G + V +G G
Sbjct: 231 LEKKGPKFVTYGINNG 246
>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
PCC 7120]
gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
PCC 7120]
Length = 451
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 126/209 (60%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR++ P + F A G+ FD HEFIS + ++ + N +QV
Sbjct: 33 IQTDTRMIKPG--EVFLAFRGEKFDGHEFISSAIARGAIAAIVDDD-YENPGLPVLQVS- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + + + R+ RF ++GVTGSVGK+TTK +IA L + G NV ++YGN+
Sbjct: 89 ----NTLEAYQKLGRWWRD-RFDIPVIGVTGSVGKTTTKELIAAVLGTKG-NVLKTYGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ D AV+EM M G+G+I ELA++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAELAQIARPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A AK E+ E V +LN D+PL+
Sbjct: 203 EAIAEAKCELLAEMPKDSVAILNHDNPLL 231
>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Cylindrospermopsis raciborskii CS-505]
gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Cylindrospermopsis raciborskii CS-505]
Length = 451
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR+L P + F A+ G+ FD H+F+ + +G V I + N D ++V
Sbjct: 33 IQTDTRVLQPG--EIFLALGGEKFDGHQFVEMAIT-RGAVAAIVDYTYNYPDLPVIKVS- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTLN+ +A + R +F ++GVTGSVGK+TTK +IA L + G V +++GN+
Sbjct: 89 ----NTLNAYQELAKWWRG-QFGIPVIGVTGSVGKTTTKELIAAVLGTRG-KVHKTHGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + + D AV+EM M G+G+I EL +A+P I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELSQGDDFAVIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
+ +A AK E+ E V VLN D+PL+
Sbjct: 203 QAIAEAKCELLAEMPNDSVAVLNYDNPLL 231
>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
daltonii FRC-32]
gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
daltonii FRC-32]
Length = 468
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 138/254 (54%), Gaps = 13/254 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ +I+EI ++ G ++ G + + TD+R + Q F A+ G FD HEFI L
Sbjct: 1 MLSIDEIIQATGGTLIGSGGKMVSGVSTDSRSVVAG--QLFVALKGDRFDGHEFIETAL- 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
GV V + E + TL +L ++A R +FS L+G+TGS
Sbjct: 58 ---AKGVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRR-KFSIPLIGITGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M+A L G ++ GN NN +G+ L L+ + AVLEMGMS GEI
Sbjct: 114 NGKTTTKEMLATILGQTGPG-LKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P + ++ N +HL S+GS+E VA+AKGE+FQ K G V V NADDPL++ L
Sbjct: 173 DRLAEIAEPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDPLISRL 232
Query: 261 TVPRGVRKVFFGWR 274
GV ++ FG R
Sbjct: 233 PTAAGVSRLSFGLR 246
>gi|451979763|ref|ZP_21928175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrospina gracilis 3/211]
gi|451763042|emb|CCQ89374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrospina gracilis 3/211]
Length = 464
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 130/235 (55%), Gaps = 10/235 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L + F I G FD H+F++ + K ++ ++ DK EG
Sbjct: 28 VSIDTRTL--KAGELFVCIQGDRFDGHDFLNEAIAKKPAGVIVSDRARLPLDK---MQEG 82
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V +TL +L ++A + RN + V VGVTG+ GKSTTK MIA A+ ++
Sbjct: 83 PFAVAVPDTLKALQDLAAHHRNQQDVRV-VGVTGTNGKSTTKEMIA-AITGTRFKTLKTQ 140
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +GV L+L+ + R ++AV+EMGMS GEI LA +A+PEI V+ NV ++H+ L
Sbjct: 141 GNLNNHIGVPLTLLNLTREHEVAVIEMGMSAAGEIRRLAEIAKPEIGVITNVSEAHMVQL 200
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
++ DV AKGE+F+ ++NADDPLV L R + FG DV+
Sbjct: 201 KTIRDVQAAKGELFEALSENGTAIVNADDPLVLELADGLRARAITFGLDPSADVQ 255
>gi|404495265|ref|YP_006719371.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
metallireducens GS-15]
gi|418065732|ref|ZP_12703103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
metallireducens RCH3]
gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
metallireducens GS-15]
gi|373561812|gb|EHP88038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
metallireducens RCH3]
Length = 470
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 143/255 (56%), Gaps = 16/255 (6%)
Query: 26 IWTINEIAESVNGKILKWGP-PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++++ +I E+ G + G G+ + TD+R + P + F + G+ FD H+++
Sbjct: 2 LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPG--ELFVPLRGERFDGHDYL---- 55
Query: 83 YGKGC-VGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVT 138
G C GV + W + G V +TL +L ++AC+ R RF+ +V VT
Sbjct: 56 -GAACDRGVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQ-RFAIPVVAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L G ++ GN NN +G+ L+ +D + AVLEMGMS G
Sbjct: 114 GSNGKTTTKEMLAAILGQTGPG-LKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI LA +ARP++ ++ N +HLE+LGS+E VARAKGE+F V NADDPL+A
Sbjct: 173 EIDRLAEIARPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDPLIA 232
Query: 259 NLTVPRGVRKVFFGW 273
P GVR+V FG
Sbjct: 233 RCPSPDGVRRVSFGL 247
>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bryantella formatexigens DSM 14469]
gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Marvinbryantia formatexigens DSM 14469]
Length = 455
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 12/243 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + F AI G+H D H FI P++Y +G + V+ + ++ VE
Sbjct: 31 IVTDSR--RAKEGSLFAAICGEHVDGHRFI-PQVYAQGALCVLCEKAPAEAQGPYILVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L+ +A + R + +VG+TGSVGK++TK MIA L S V ++ GN+
Sbjct: 87 ----STLKALMAIAEFYRQ-QLDIKVVGITGSVGKTSTKEMIASVL-SEKYRVLKTPGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG++ GE+ L+++ARP++ V+ N+G HLE LG
Sbjct: 141 NNELGLPLTVFQLTEEDEVAVLEMGINHFGEMHRLSKIARPDVCVITNIGTCHLEFLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ V RAK EIF VLN DD ++ L RG+ FFG C +R A + N
Sbjct: 201 DGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKEVRGITPQFFGIEHACAIR--ATDIEN 258
Query: 289 GGL 291
GL
Sbjct: 259 AGL 261
>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
17241]
gi|167665963|gb|EDS10093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerotruncus colihominis DSM 17241]
Length = 452
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 143/268 (53%), Gaps = 19/268 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
T+ EIA ++ G + TDTR L P F A+ G+ FD H++I+ L G
Sbjct: 1 MTLKEIAAAIGADGTFEGAVDCVSTDTRALPPG--CLFVALEGERFDGHDYITAALRGGA 58
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + ++ G V NT +L+++A A +RF VG+TGSVGK+TT
Sbjct: 59 ACAVAHER--RDYGAGPVMY----VKNTQRALMDLA-RAYRARFDIHCVGITGSVGKTTT 111
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K MIA A+ S G ++ GN NN +G+ +L+G+ R + AV+EMGM G GEI LA +
Sbjct: 112 KDMIAAAV-SAGFQTLKTEGNLNNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADV 170
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR-G 265
ARP + V+ N+G SH+E LGS E++ +AK E+ G L DD L+ +++PR
Sbjct: 171 ARPTLGVITNIGVSHIEQLGSRENIMKAKLELADALPDGAPLFLCGDDDLLKKVSIPRLD 230
Query: 266 VRKVFFGWR------RGCDVRLVAAQVA 287
VR F+G D+R AQ A
Sbjct: 231 VR--FYGVENPACALHAADIREADAQTA 256
>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Halanaerobium hydrogeniformans]
gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Halanaerobium hydrogeniformans]
Length = 457
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ +IAE+ +GKI+K G I I D+R K+ F AI G+ D HEFI +
Sbjct: 4 LTLAQIAEAASGKIIK-GKAEIKIKDIVIDSR--EVKKDDLFIAIIGEINDGHEFIDSAV 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
++ Q+ + + ++V+ +T +L ++A Y R + +TGSVG
Sbjct: 61 ENGAKAVIVDRQINDYSNLAVIKVD-----DTTKALQDIAHYYRMKFKDLKIAAITGSVG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK MIA L + ++ GN+NN++G+ L+L+ + + AVLEMGMSG GEI
Sbjct: 116 KTSTKDMIAAVL-AQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIEL 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +ARP+I V+ NVG +H+E LGS+E+VA AK E+ +LN D+ +
Sbjct: 175 LAELARPQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAE 234
Query: 263 PRGVRKVFFGWRRGCDVRLV 282
+ + FG+ G D++++
Sbjct: 235 NFNSKLITFGFSAGADLQVI 254
>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 468
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 138/259 (53%), Gaps = 8/259 (3%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P ++P +T +E+A + G+ L P + + TDTR LA Q F A+ G+ FDAH+
Sbjct: 3 TPRSTPHFTSDELAAATGGRWLGAPPAAVDGVSTDTRTLA--AGQLFVALKGERFDAHDH 60
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ V+ +TL +L +A + R RF ++GV
Sbjct: 61 LEAAAAAGAAALVVSGAWAAAHPA--PPRPALAVADTLAALGAIARFHR-CRFGIPVIGV 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TT+ MIA L + G V ++ GN NN VGV L+L G+D A AV+EMGM+
Sbjct: 118 TGSNGKTTTREMIAAILATRG-PVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHP 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +A+P++ VV +HLE LG++E VA AK E+++ G + V+NADD +
Sbjct: 177 GEIARLAAIAQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADDARM 236
Query: 258 ANLTVPRGVRKVFFGWRRG 276
V G R + F RG
Sbjct: 237 LKRGVASGRRMLTFASGRG 255
>gi|414076763|ref|YP_006996081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena sp. 90]
gi|413970179|gb|AFW94268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena sp. 90]
Length = 451
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 135/226 (59%), Gaps = 11/226 (4%)
Query: 33 AESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
AESVN G+ I TDTRIL P + F A+ G+ FD H+F++ + KG + I
Sbjct: 16 AESVNVSASTLTQLGMGIQTDTRILQPG--EVFLALRGEKFDGHDFVATAI-AKGAIVAI 72
Query: 92 GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA 151
+ N ++V+ +TL + +A + R S F+ ++G+TGSVGK+TTK +I+
Sbjct: 73 VDHAYKNPGFPVLRVK-----DTLKAYQQIAKWWRES-FTIPVIGITGSVGKTTTKELIS 126
Query: 152 LALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211
L + G V ++YGN+NN +GV+ +L+ + R D AV+EM M G+G+I EL +A+P I
Sbjct: 127 AVLATKG-KVHKTYGNFNNEIGVSKTLLEMGRENDFAVIEMAMRGRGQIAELTEIAKPTI 185
Query: 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
V+ NVG +H+E LGS E +A AK E+ + +LN D+PL+
Sbjct: 186 GVITNVGTAHIELLGSEEAIAEAKCELLATMPNDSIAILNHDNPLL 231
>gi|348026408|ref|YP_004766213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera elsdenii DSM 20460]
gi|341822462|emb|CCC73386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera elsdenii DSM 20460]
Length = 456
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 18/243 (7%)
Query: 26 IWTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T EI ++ ++LK P +CTDTR +A K F A G F+ H+F+ L
Sbjct: 3 VFTSEEIIQATGARLLKPAAPVSFSEVCTDTRAIA--KGSLFVAFKGTSFNGHDFVGKAL 60
Query: 83 YGKGCVGVIGNQVCNNWD----KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G G + ++V ++ FV +TL + N+A + R RFS +V VT
Sbjct: 61 EA-GAAGAVVSEVRPEYEGLTAPLFVVA------DTLKAYQNLARFHRR-RFSIPVVAVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++T++MIA L V Q+ N+NN +G+ +L+ + + V+EMGM G G
Sbjct: 113 GSVGKTSTRNMIATVLGE-KYKVLQTEKNFNNEIGLPKTLLQLTPDHEACVVEMGMRGLG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA + P I VV NVG SH+E LGS E++A+AKGE+ Q VLN DDP V
Sbjct: 172 QIAELAAIGEPTIGVVTNVGKSHIELLGSQENIAKAKGELIQALDEKGTAVLNGDDPFVR 231
Query: 259 NLT 261
+T
Sbjct: 232 QMT 234
>gi|366166620|ref|ZP_09466375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetivibrio cellulolyticus CD2]
Length = 457
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 146/255 (57%), Gaps = 16/255 (6%)
Query: 31 EIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EI ++VNG +L G + TD+R + K +F + G+ FD H++I + +G
Sbjct: 8 EIVKAVNG-VLISGDLNTEFSNVTTDSRQV--RKGDFFIPLVGEKFDGHDYIITS-FEQG 63
Query: 87 CVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + + ++ K ++VE +TL++L ++ Y R +F VG+TGSVGK++
Sbjct: 64 VSGCLTQKDTAGYEGKVVIKVE-----DTLSALRMLSSYYR-KKFDIPFVGITGSVGKTS 117
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M++ L NV ++ GN+NN +GV L++ ++ + AV+EMGMSG GEI L
Sbjct: 118 TKDMVSSVLNK-KFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTS 176
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P+I ++ N+G SH+E LGS +++ +AK EIF+ K + +LN DD L+ L
Sbjct: 177 IVKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLKNLLN 236
Query: 266 VRKVFFGWRRGCDVR 280
R VF+G G D +
Sbjct: 237 YRTVFYGMEDGLDYQ 251
>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
azollae' 0708]
gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
azollae' 0708]
Length = 454
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 125/209 (59%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTRIL P + F A+ G+ FD HEF++ + KG + I + N +QV
Sbjct: 33 IQTDTRILQPG--EVFVALRGEKFDGHEFVAMAIV-KGAIAAIVDYAYENPVFPVLQV-- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+S +S ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 88 ---TDTLKAYQQIGRWWRDS-YSIPVIGVTGSVGKTTTKELIAAVLATKG-QVHKTYGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G+G+I EL ++ARP I V+ NVG +H+E L S
Sbjct: 143 NNEIGVPKTLLELGAEHDFAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLSSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A AK E+ E V +LN D PL+
Sbjct: 203 EAIAEAKCELLAEMPNDSVAILNYDSPLL 231
>gi|354565825|ref|ZP_08984999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fischerella
sp. JSC-11]
gi|353548698|gb|EHC18143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fischerella
sp. JSC-11]
Length = 452
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTRIL P + F A+ G+ FD HEF+ P KG + I + N +QV+
Sbjct: 33 IQTDTRILKPG--EVFLALRGEKFDGHEFV-PMAIAKGALAAIVDFAYPNPQFPVLQVK- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+ RF ++GVTGSVGK+TTK +IA L + G V +++ N+
Sbjct: 89 ----DTLQAYQKIGRWWRD-RFEIPVIGVTGSVGKTTTKELIAAVLATQG-KVHKTHANF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ D AV+EM M GKG+I EL ++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELNAEHDFAVVEMAMRGKGQIAELTQIARPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
+A AK E+ + V +LN D+PL+
Sbjct: 203 AAIAAAKCELLAQMPKDSVAILNYDNPLL 231
>gi|442805606|ref|YP_007373755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Clostridium stercorarium subsp. stercorarium DSM 8532]
gi|442741456|gb|AGC69145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Clostridium stercorarium subsp. stercorarium DSM 8532]
Length = 461
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 149/255 (58%), Gaps = 15/255 (5%)
Query: 30 NEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
++I++ VNG+++ + + TDTR L K F AI G+ FD H+FI E + KG
Sbjct: 7 DKISQWVNGRLIGNENAVADKVSTDTRTLT--KGSLFVAIRGEKFDGHDFIG-EAFRKGA 63
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKST 145
G++ ++ K + N + +++ + ARN F ++G+TGSVGK+T
Sbjct: 64 -GIVLSE------KEYPVSGDNAVILVKDTVKALGDLARNYIKLFDLTVIGITGSVGKTT 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK MIA L S V ++ GN+NN++G+ LS++ +DR+ +AV EMGMS GEI L+R
Sbjct: 117 TKEMIAQVL-STQYKVHKTMGNFNNQIGLPLSVLNLDRSHSVAVFEMGMSAMGEIDYLSR 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P+I ++ N+G SH+E LGS +++ RAK EI K V +LN DD L++ L
Sbjct: 176 IIQPDIGIITNIGISHIEKLGSRQNILRAKLEIINGMKENGVLILNGDDELLSGLEGLLP 235
Query: 266 VRKVFFGWRRGCDVR 280
+ VF+G C+V+
Sbjct: 236 MPVVFYGINDNCNVK 250
>gi|427718687|ref|YP_007066681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Calothrix sp. PCC 7507]
gi|427351123|gb|AFY33847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Calothrix sp. PCC 7507]
Length = 451
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Query: 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNG 110
TD+RI+ P + F A+ G++FD HEF++ + +G + I + C + G ++ N
Sbjct: 35 TDSRIIKPG--EVFVALRGENFDGHEFVARAI-AQGALAAIVD--CAYENPGLPTLQVN- 88
Query: 111 NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
NTL + + + R+ RF ++GVTGSVGK+TTK +IA L + G V ++YGN+NN
Sbjct: 89 --NTLEAYQKIGRWWRD-RFHIPVIGVTGSVGKTTTKELIAAVLATKG-RVHKTYGNYNN 144
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
+GV +L+ +D D AV+EM M G+G+I EL ++ +P I ++ NVG +H+E LGS E
Sbjct: 145 EIGVPKTLLELDTEHDYAVIEMAMRGRGQIAELTQITQPTIGLITNVGTAHIELLGSEEA 204
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLV 257
+A AK E+ E + +LN D+PL+
Sbjct: 205 IAEAKCELLAEMPKDSIAILNHDNPLL 231
>gi|357037244|ref|ZP_09099044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum gibsoniae DSM 7213]
gi|355361409|gb|EHG09164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum gibsoniae DSM 7213]
Length = 462
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 141/257 (54%), Gaps = 14/257 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ E+ ++ G++L+ G + +CTDTR +AP FFA+ G++FDAH+F+ +
Sbjct: 4 MTVGEVYRAIGGRLLQ-GDENMTVSRVCTDTRQIAPG--DLFFALRGENFDAHDFVDQAI 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V+ V ++V +TL L +A Y R +F+ +VG+TGS G
Sbjct: 61 AGGAGALVVSRDVDVQPRVPLIRVG-----DTLAGLQALAAYHRR-QFAVPVVGITGSSG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+T K M+A L++ +V ++ GN+NN +G+ L+L+ AV+EM M G GEI
Sbjct: 115 KTTIKDMVASVLQTR-WSVLKTRGNFNNEIGLPLTLLEFSPDHGAAVVEMAMRGPGEINA 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L ++ARP V+ N+G +HLE LGSLE++ARAKGE+ + +L D L
Sbjct: 174 LCQIARPTCAVITNIGTAHLERLGSLENIARAKGELLEHISADGFALLPGDSHLAREQAR 233
Query: 263 PRGVRKVFFGWRRGCDV 279
+ +FFG G D+
Sbjct: 234 RCHGQVLFFGLEPGMDI 250
>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Mitsuokella multacida DSM 20544]
gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Mitsuokella multacida DSM 20544]
Length = 459
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 9/260 (3%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
P +T++E+ E+ ++ K I TDTR + P F A G+ F+ +F+ +
Sbjct: 2 PAFTLDEVREATGAQLYKMEHEEFTDIVTDTRKITPG--VLFLAFKGERFNGEDFVR-DA 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG GV+ + C ++ +TL + +A +A RFS +V +TGS G
Sbjct: 59 VEKGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLA-HAWRMRFSLPVVAITGSNG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK + A L + G V ++ N+NN +G+ L+L+G+ + AV+E+GM G +I
Sbjct: 118 KTTTKDLTAAVLSARG-PVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEA 176
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
+A +A P + +V NVG++H+E LGS+E++A+AK E+ + G VLNAD+P VA +
Sbjct: 177 MAPIAAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAMRS 236
Query: 261 TVPRGVRKVFFGWRRGCDVR 280
GVR + FG + DVR
Sbjct: 237 QAREGVRVLTFGIEKEADVR 256
>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halothermothrix orenii H 168]
gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halothermothrix orenii H 168]
Length = 461
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 144/258 (55%), Gaps = 14/258 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ EI +V+GKI++ P I D+R + P F AI G+ FD H FI PE
Sbjct: 4 MSLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPG--DMFVAIIGERFDGHSFI-PEAV 60
Query: 84 GKGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG +I + + G + VE +T +L ++A Y R ++G+TGS G
Sbjct: 61 SKGARALIVDHSIKAYPGVGIILVE-----DTTRALQDLARYHRMLIKGLTVIGITGSAG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MIA L+ NV ++ GN NN G+ L+L+ +D +IAVLEMGMS GEI
Sbjct: 116 KTTTKDMIASVLKE-KYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIEL 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT- 261
LA +++P+I V+ NVG +HLE+L ++ +VAR K E+ + + +LN D+ V ++
Sbjct: 175 LASISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDMKD 234
Query: 262 VPRGVRKVFFGWRRGCDV 279
G + +++G+ DV
Sbjct: 235 YVEGKKVIYYGFSPEADV 252
>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
brookii D9]
gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
brookii D9]
Length = 437
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR+L P + F A+ G+ FD H+F+ + +G V I + + + ++V
Sbjct: 33 IQTDTRVLQPG--EIFLALGGEKFDGHQFVEMAI-ARGAVAAIVDYTYDYPNLPVIKVS- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTLN+ +A + R +F ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 89 ----NTLNAYQELAKWWRG-QFGIPVIGVTGSVGKTTTKELIASVLGTRG-KVHKTYGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G+G+I EL +A+P I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELSEGDDFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
+ +A AK E+ E V VLN D+PL+
Sbjct: 203 QAIAEAKCELLAEMPNDSVAVLNYDNPLL 231
>gi|335039976|ref|ZP_08533116.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldalkalibacillus thermarum TA2.A1]
gi|334180092|gb|EGL82717.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldalkalibacillus thermarum TA2.A1]
Length = 450
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 141/258 (54%), Gaps = 10/258 (3%)
Query: 26 IWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ T+ ++ E ++L+ I+ D+R L + F A+TG D H+FI +
Sbjct: 1 MLTVKDVVELSGSQLLQGDLEAIVEFVHFDSRQL--EDHALFVALTGGARDGHQFIDDAI 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG V+ +Q + V N +T ++ +A R R S +V VTGS G
Sbjct: 59 -QKGATSVLISQDDPKLRQTHQGVNFIFNEDTRSAFQALAAGYRR-RLSLPVVAVTGSNG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MIA L S NV+++Y N+NN +GV LSL+ I + +IAVLE+GM+ GEI
Sbjct: 117 KTTTKDMIAHLL-SAKFNVYKTYKNFNNDLGVPLSLLHIKKHHEIAVLELGMNRAGEIDF 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LARM RP I V+ NVGD+H+E G E +A AKGE+ + +LN DDPLV +
Sbjct: 176 LARMTRPNISVITNVGDAHIEFFGLREKIAEAKGELLPHTDPDGFVILNGDDPLVLS-QA 234
Query: 263 PRGVRKVF-FGWRRGCDV 279
PR KV+ + ++ D+
Sbjct: 235 PRYSGKVYTYSIKKEADI 252
>gi|345017942|ref|YP_004820295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter wiegelii Rt8.B1]
gi|344033285|gb|AEM79011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 461
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 145/264 (54%), Gaps = 22/264 (8%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGSLKDKVIGISTDSR--KVKKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G + VI ++ N ++ + V TL +L +A Y R +F+ + VTGS
Sbjct: 63 GAIAVITARLENVECLKDFSVDVIYVN-----ETLEALHKIASYYR-KKFNIPFIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 SGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++ +
Sbjct: 176 RRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKI 235
Query: 261 TVPRGVRKVFFGWRRG----CDVR 280
+ + +G + G CD++
Sbjct: 236 PLKYSSKYYRYGIKSGEIKACDIK 259
>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. K]
gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. K]
Length = 468
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P ++P +T +E+A + G+ L P + + TDTR L+P Q F A+ G+ FDAH+
Sbjct: 3 TPRSTPQFTPDELAAATRGRWLGAPPSAVAGVSTDTRTLSPG--QLFVALKGERFDAHDH 60
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLV 135
+ V+ + + L + AR+ R F ++
Sbjct: 61 LEAAAAAGAAALVVSEAWAAAHPAPPRP-----ALAVADPLAALGAIARHHRCRFGIPVI 115
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GVTGS GK+TT+ MIA L + G V ++ GN NN VGV L+L G++ A AV+EMGM+
Sbjct: 116 GVTGSNGKTTTREMIAAILATRG-PVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMN 174
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI LA +A+P++ VV +HLE LG+++ VA AK E+++ G + V+NADD
Sbjct: 175 HPGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA 234
Query: 256 LVANLTVPRGVRKVFFGWRRG 276
+ V G R + F RG
Sbjct: 235 RMLKRGVASGRRMLTFASGRG 255
>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus JW 200]
gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus JW 200]
Length = 461
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 145/264 (54%), Gaps = 22/264 (8%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGSLKDKVIGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G + VI ++ N ++ + V TL +L +A Y R +F+ + VTGS
Sbjct: 63 GAIAVITARLENVECLKDFSVDVIYVN-----ETLEALHKIASYYR-KKFNIPFIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 SGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++ +
Sbjct: 176 RRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKI 235
Query: 261 TVPRGVRKVFFGWRRG----CDVR 280
+ + +G + G CD+
Sbjct: 236 PLQYSSKYYRYGIKSGEIKACDIE 259
>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 468
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P ++P +T +E+A + G+ L P + + TDTR L+P Q F A+ G+ FDAH+
Sbjct: 3 TPRSTPQFTPDELAGATRGRWLGAPPSAVAGVSTDTRTLSPG--QLFVALKGERFDAHDH 60
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLV 135
+ V + + + L + AR+ R F ++
Sbjct: 61 LE-----AAAAAGAAALVVSEAWAAAHPAPPRAALAVADPLAALGAIARHHRCRFGIPVI 115
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GVTGS GK+TT+ MIA L + G V ++ GN NN VGV L+L G++ A AV+EMGM+
Sbjct: 116 GVTGSNGKTTTREMIAAILATRG-PVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMN 174
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI LA +A+P++ VV +HLE LG+++ VA AK E+++ G + V+NADD
Sbjct: 175 HPGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA 234
Query: 256 LVANLTVPRGVRKVFFGWRRG 276
+ V G R + F RG
Sbjct: 235 RMLKRGVASGRRMLTFASGRG 255
>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
spumigena CCY9414]
gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
spumigena CCY9414]
Length = 450
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 127/209 (60%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + P + F A+ G++FD H+F+S + ++ + N D +QV
Sbjct: 33 IQTDTRRIKPG--EVFLALRGENFDGHDFVSHAIAQGAIAAIVDSD-YENADVAVLQVR- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+ R + ++GVTGSVGK+TTK +IA L + G V +++GN+
Sbjct: 89 ----DTLQAYQQLGRWWRD-RLNIPVIGVTGSVGKTTTKELIAAVLATEG-RVHKTFGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ +D D AV+EM M G+G+I EL ++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELDTEHDYAVVEMAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +ARAK E+ E V +LN D+PL+
Sbjct: 203 EAIARAKCELLAEMPEDSVAILNHDNPLL 231
>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena variabilis ATCC 29413]
gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena variabilis ATCC 29413]
Length = 451
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 14/211 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--VQV 106
I TDTRI+ P + F A G+ FD HEF+ + ++ + N GF +QV
Sbjct: 33 IQTDTRIIKPG--EVFLAFRGEKFDGHEFVQTAIANGAIAAIVDDDYEN---PGFPVLQV 87
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
NTL + + + R+ RF ++GVTGSVGK+TTK +IA L + G N+ ++YG
Sbjct: 88 S-----NTLEAYQKLGRWWRD-RFDIPVIGVTGSVGKTTTKELIAAVLGTKG-NIHKTYG 140
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ ++ D AV+EM M G+G+I EL ++A P I V+ NVG +H+E LG
Sbjct: 141 NFNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAELTQIANPTIGVITNVGTAHIELLG 200
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A AK E+ E V +LN D+PL+
Sbjct: 201 SEEAIAEAKCELLAEMPKDSVAILNHDNPLL 231
>gi|410583573|ref|ZP_11320679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermaerobacter subterraneus DSM 13965]
gi|410506393|gb|EKP95902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermaerobacter subterraneus DSM 13965]
Length = 475
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ E+AE+ G+++ G G+ D+R + FFA+ GQ D H+F+ L
Sbjct: 4 AMAEVAEATGGRLVA-GDGGVTVAGGAVDSRRV--EAGNLFFALPGQRVDGHQFVGQALA 60
Query: 84 GKGCVGVIGNQVCNNWDKG------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
VI + G V+V +T +L ++A + R R +VG+
Sbjct: 61 AGARGAVIARPLAEVLPGGPPPGTAVVEV-----ADTRQALASLARWVRRRRPGLRVVGI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK M A LE V ++ GN+N +G+ L L+ ++ +AVLEM M G
Sbjct: 116 TGSVGKTTTKEMTAAVLEQR-FAVLKTAGNYNTDIGLPLILLDLEDHHQVAVLEMAMRGL 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +A P+I VV V +SHLE LGSLE +A+AKGE+ + V +LNA DP V
Sbjct: 175 GEIARLASIAEPDIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRV 234
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ R + FG G DVR VA V + G G + LE
Sbjct: 235 RAMAARTRARVLTFGVEGGADVRAVA--VESRGPGTRFRLE 273
>gi|392940680|ref|ZP_10306324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacter siderophilus SR4]
gi|392292430|gb|EIW00874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacter siderophilus SR4]
Length = 461
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 144/264 (54%), Gaps = 22/264 (8%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGSLKDKVIGISTDSR--KVKKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G + VI ++ N ++ + V TL +L +A Y R +F+ + VTGS
Sbjct: 63 GAIAVITARLENVECLKDFSVDVIYVN-----ETLEALHKIASYYR-KKFNIPFIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 SGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++ +
Sbjct: 176 RRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKLELIENFKEENVIVLNADDDMLSKI 235
Query: 261 TVPRGVRKVFFGWRRG----CDVR 280
+ + +G + G CD+
Sbjct: 236 PLQYSSKYYRYGIKSGEIKACDIE 259
>gi|390934666|ref|YP_006392171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570167|gb|AFK86572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 457
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 139/255 (54%), Gaps = 14/255 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I T+ EI ++ GK+L G I I TD+R + F + G+ F+ EFI
Sbjct: 2 ILTVKEILDATEGKLLS-GDINICVSGISTDSRTIKSG--DLFIPLKGERFNGEEFIDDA 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L + +K + V+ +T ++L +A Y R S+F + VTGS
Sbjct: 59 LNVASASLTESINYIRHDNKPIIFVK-----DTKDALHRIAKYYR-SKFDIPFIAVTGSS 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L S+ NV ++ GN+NN +G+ L+L ++ ++AV+EMGMSG GEI
Sbjct: 113 GKTTTKDMIYDVL-SMKYNVLKTIGNFNNEIGLPLTLFKLNDDHEMAVVEMGMSGFGEIR 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +A P + V N+G +H+E LGS E++ +AK E+ ++ K GD V+NADD ++ L
Sbjct: 172 RLKNIASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKDGDTIVINADDDMLIKLL 231
Query: 262 VPRGVRKVFFGWRRG 276
+G + V +G G
Sbjct: 232 DKKGPKFVTYGINNG 246
>gi|434403084|ref|YP_007145969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cylindrospermum stagnale PCC 7417]
gi|428257339|gb|AFZ23289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cylindrospermum stagnale PCC 7417]
Length = 451
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Query: 32 IAESVN---GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+A+ VN + +WG I TDTR L P + F A+ G+ FD H FI + V
Sbjct: 15 LAQPVNLSASALAQWGSG--IQTDTRKLKPG--EVFVALRGEKFDGHTFIPTAMAIGALV 70
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
++ + N GF + +TL + +A + R R ++GVTGSVGK+TTK
Sbjct: 71 AIVDFEYDN---PGFPVLRVK---DTLKAYQQIAGWWRQ-RLQIPVIGVTGSVGKTTTKE 123
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
+IA L + G V ++YGN+NN +GV +L+GI D AV+EM M G+G+I EL ++ +
Sbjct: 124 LIAAVLATQG-RVHKTYGNFNNEIGVPKTLLGISAEHDFAVIEMAMRGRGQIAELTQITQ 182
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
P I ++ NVG +H+E LGS E +A AK E+ E V +LN D+PL+
Sbjct: 183 PTIGLITNVGTAHIELLGSEEAIAEAKCELLAEMPADSVAILNHDNPLL 231
>gi|400756774|ref|YP_006589581.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens PCA]
gi|409913520|ref|YP_006891985.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens KN400]
gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens KN400]
gi|399108085|gb|AFP20514.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens PCA]
Length = 470
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 141/259 (54%), Gaps = 18/259 (6%)
Query: 26 IWTINEIAESVNGKILKWGP---PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T+++I + G+I+ G + TD+R + P + F + G+ FD H+++
Sbjct: 2 LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPG--ELFIPLRGERFDGHDYLDAAR 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMA-CYARNSRFSGVLVGV 137
GV V W G Q+ + +TL +L ++A C+ R RF +V V
Sbjct: 60 ----ARGVRLTLVERQWLAGR-QLPADVTCIVVDDTLRALGDLAACHRR--RFDIPVVAV 112
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK M+A L G ++ GN NN +GV L + AVLE+GMS
Sbjct: 113 TGSNGKTTTKEMLAAILARTGEG-LKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEF 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA + RP++ ++ N +HLE+LGS+E VARAKGE+F + G V NADDPL+
Sbjct: 172 GEIDRLAEIVRPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDPLI 231
Query: 258 ANLTVPRGVRKVFFGWRRG 276
A P GV++V FG R G
Sbjct: 232 ARCPSPEGVKRVSFGLRGG 250
>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Y412MC10]
gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Y412MC10]
Length = 473
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 24/241 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F I G+ FD HEF+ L G W + V
Sbjct: 30 VGTDSRTIQPG--NLFVPIVGEKFDGHEFVESVLAGGAGAAF--------WQRDHQPVPA 79
Query: 109 NGNV----NTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + +TL +L ++A Y SR +VG+TGS GK+T K M++ LE+ NV +
Sbjct: 80 DLPLIFVEDTLKALQSLAAAYLSESRAK--VVGITGSNGKTTVKDMVSALLETT-YNVHK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ + DI VLEMGMSG+ EI L+ +ARP++ V+ NVG++HL
Sbjct: 137 TQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLL 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGC 277
LGS E++ARAK EI K G + + + D+PL+ + P G+R FG +
Sbjct: 197 QLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKPEGLRTFTFGNQDTN 256
Query: 278 D 278
D
Sbjct: 257 D 257
>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF5]
gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF5]
Length = 473
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 132/238 (55%), Gaps = 18/238 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
+ TD+R + P F I G+ FD HEF+ L G G + D + VE
Sbjct: 30 VGTDSRTIQPG--NLFVPIVGEKFDGHEFVESVLASGAGAAFWQRDHQPVPADLPLILVE 87
Query: 108 GNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL +L ++A Y SR +VG+TGS GK+T K M++ LE+ NV ++ G
Sbjct: 88 -----DTLKALQSLAAVYLSESRAK--VVGITGSNGKTTVKDMVSALLETT-YNVHKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ + DI VLEMGMSG+ EI L+ +ARP++ V+ NVG++HL LG
Sbjct: 140 NYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCD 278
S E++ARAK EI K G + + + D+PL+ + P G+R FG + D
Sbjct: 200 SREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKPEGLRTYTFGNQDTND 257
>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X514]
gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X514]
Length = 460
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 146/265 (55%), Gaps = 24/265 (9%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 5 IDEIVRATEGKLIKGNLKDKVMGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVN------TLNSLVNMACYARNSRFSGVLVGVTG 139
G VI ++ N V+ + +VN TL +L +A Y R +F+ + VTG
Sbjct: 62 GASAVITARLDN------VECLKDFSVNVIYVNETLEALHKIASYYR-KKFNIPFIAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGM+G GE
Sbjct: 115 SSGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++
Sbjct: 174 IRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSK 233
Query: 260 LTVPRGVRKVFFGWRRG----CDVR 280
+ + + +G + G CD+
Sbjct: 234 IPLQYSSKYYRYGIKSGEIKACDIE 258
>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X561]
gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X513]
gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X561]
gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X513]
gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 461
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 146/265 (55%), Gaps = 24/265 (9%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGNLKDKVMGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVN------TLNSLVNMACYARNSRFSGVLVGVTG 139
G VI ++ N V+ + +VN TL +L +A Y R +F+ + VTG
Sbjct: 63 GASAVITARLDN------VECLKDFSVNVIYVNETLEALHKIASYYR-KKFNIPFIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGM+G GE
Sbjct: 116 SSGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++
Sbjct: 175 IRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSK 234
Query: 260 LTVPRGVRKVFFGWRRG----CDVR 280
+ + + +G + G CD+
Sbjct: 235 IPLQYSSKYYRYGIKSGEIKACDIE 259
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 139/265 (52%), Gaps = 15/265 (5%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
P+WT +++ +++ G + P G I D+R +AP + FFAI G H+D H+FI
Sbjct: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHA 60
Query: 82 LY-GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G G V V + V + G + + G + L +L +A AR R ++ +TGS
Sbjct: 61 VQKGAGLVVVNTDMVAS---IGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ +AL S+ + G++NN +GV L+L + VD + E+GMS GEI
Sbjct: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + RP I V+ + +HL + +E++A AK EIF+ + LN DD L
Sbjct: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
Query: 261 TVPR---GVRKVF-FGWRRGCDVRL 281
G++ ++ FG + D +L
Sbjct: 236 KAKSHALGIKTIYSFGKSKNADFQL 260
>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
DSM 12680]
gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
DSM 12680]
Length = 459
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 132/254 (51%), Gaps = 7/254 (2%)
Query: 31 EIAESVNGKILKWGPPGIICTDTRILAPNKNQW--FFAITGQHFDAHEFISPELYGKGCV 88
+IA ++ G I++ G P I T + + FFA+ G D H+F+ L
Sbjct: 7 DIARAIEGNIIQ-GRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGALA 65
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V+ V + +G + G V + + M RF LVGVTGSVGK+TTK
Sbjct: 66 AVVSRPV--SLPQGLGE-RGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
+ A LE+ ++ GN+NN +GV L+L+ +D + V+EM M GEI ELA +A
Sbjct: 123 LTATCLEAR-FQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELASIAL 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
P +++NV HLE+LGS+E +A+AK E+F+ +N D+PL+ V+K
Sbjct: 182 PTCGIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNPLLVEAAEKYAVKK 241
Query: 269 VFFGWRRGCDVRLV 282
V FGW CD RL+
Sbjct: 242 VRFGWGANCDDRLL 255
>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 457
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 152/277 (54%), Gaps = 15/277 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I ++ EI ++ +GK+L I TD+R + + + F + G++F+ F+ L
Sbjct: 2 ILSVKEIIDATSGKLLSGDINSTISGISTDSRTIK--EGELFIPLKGENFNGEMFVEDAL 59
Query: 83 -YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G + N V ++K + V+ NT +L +A Y R +F + VTGS
Sbjct: 60 KIGSASLTESVNNVGR-YNKPVIFVD-----NTKEALHKIAKYYR-EKFQIPFIAVTGSN 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L S+ NV ++ GN+NN +G+ L++ +++ D+A++EMGMSG GEI
Sbjct: 113 GKTTTKDMIYDVL-SMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIR 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +A P + V N+G +H+E LGS E++ +AK E+ + K G +LNADD ++ LT
Sbjct: 172 RLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLT 231
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+G + + +G G DV+ + + +V+++
Sbjct: 232 NKKGPQYITYGIDNG-DVKAFDIEYKEESVKYKVIID 267
>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Carboxydothermus hydrogenoformans Z-2901]
gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Carboxydothermus hydrogenoformans Z-2901]
Length = 458
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 11/228 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ D HEF+ P+ KG GV+ V + Q+
Sbjct: 27 VSTDTRTLKPY--ALFVALHGEKLDGHEFV-PDAVAKGAAGVV---VERPFSINVTQIVV 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L +A Y R V +G+TGS GK+TTK ++ L NV + N+
Sbjct: 81 K---DTFRALQELALYNRQKEGLKV-IGITGSNGKTTTKDLVKAVLRQ-KYNVCATEKNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D ++ ++EMGM G GEI L ++ARP+I ++ N+G++HLE L S
Sbjct: 136 NNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQ 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG 276
E++ARAK E+ + V ++N + P + + V+K FFG R G
Sbjct: 196 ENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKKYFFGHRAG 243
>gi|373115454|ref|ZP_09529627.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 7_1_58FAA]
gi|371670397|gb|EHO35479.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 7_1_58FAA]
Length = 463
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 145/263 (55%), Gaps = 21/263 (7%)
Query: 27 WTINEIAESVNGKIL-KWGP----PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TI EI ++V GK+L ++G G + TD+R + + F + G+ FD H +I+
Sbjct: 4 MTIREIMDAVGGKLLGEFGDINRMVGRVETDSRTI--HAGSLFVPLVGERFDGHAYINAA 61
Query: 82 LYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L G G G + ++ G +++V+ +T +L ++A Y + +F +V +TG
Sbjct: 62 LEG-GAAGCFTQRERESYLPGKFYIKVD-----STQRALRDLAKYYKK-KFPIPVVALTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK M+A L V ++ GN NN +GV ++L+ + +IAVLE+GM+ GE
Sbjct: 115 SVGKTTTKDMVAAVLGE-KYRVLKTEGNLNNEIGVPMTLLRLSGEHEIAVLELGMNHAGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ + P++ ++ N+GDSH+E GS E + AK EIF K G V+N DDPL+
Sbjct: 174 IDYLSALVEPDVVLMTNIGDSHIEHFGSREKILEAKSEIFHHVKSGAFVVINGDDPLLNT 233
Query: 260 L--TVPRGVRKVFFGWRRGCDVR 280
L +P +V G G D R
Sbjct: 234 LPGKLPYAFTRV--GAGEGLDYR 254
>gi|336425900|ref|ZP_08605914.1| hypothetical protein HMPREF0994_01920 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336011365|gb|EGN41325.1| hypothetical protein HMPREF0994_01920 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 475
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 152/277 (54%), Gaps = 26/277 (9%)
Query: 27 WTINEIAESVNGKIL-----------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAH 75
T+ IA++ NG+++ G++ D+R +N F A G+ D H
Sbjct: 14 MTLTNIADACNGRLIYPAENSRKETEHLEAAGVV-IDSR--KAGENFIFVATKGERVDGH 70
Query: 76 EFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
FI P+++ KG +GV+ + + + VE ++ +L + + R + +V
Sbjct: 71 RFI-PDVFAKGALGVVCEKEPKSLPGPCIVVE-----DSFEALKQIGEFYRQ-QLPVKVV 123
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK++TK +A L S+ V ++ GN+NN VGV L+++ + ++AVLEMG++
Sbjct: 124 GITGSVGKTSTKEFVAAVL-SMKYKVHKTLGNYNNEVGVPLTVLSMPEDTEVAVLEMGIN 182
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKL-GDVCVLNADD 254
GE+ L+R+ARP+I ++ N+G HLE LGS E + +AK E+F K G VC+ N DD
Sbjct: 183 HFGEMHNLSRIARPDICIMTNIGQCHLEFLGSREGILKAKSEMFDFMKEDGSVCI-NGDD 241
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
++A++ +G + V FG C R+ A + GL
Sbjct: 242 DMLASIKEVKGKKPVTFGLSEQC--RVYATDIKGKGL 276
>gi|365845580|ref|ZP_09386345.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavonifractor plautii ATCC 29863]
gi|364559974|gb|EHM37934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavonifractor plautii ATCC 29863]
Length = 463
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 145/263 (55%), Gaps = 21/263 (7%)
Query: 27 WTINEIAESVNGKIL-KWGP----PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TI EI ++V GK+L ++G G + TD+R + + F + G+ FD H +I+
Sbjct: 4 MTIREIMDAVGGKLLGEFGDINRMVGRVETDSRTI--HAGSLFVPLVGERFDGHAYINAA 61
Query: 82 LYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L G G G + ++ G +++V+ +T +L ++A Y + +F +V +TG
Sbjct: 62 LEG-GAAGCFTQRERESYLPGKFYIKVD-----STQRALRDLAKYYKK-KFPIPVVALTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK M+A L V ++ GN NN +GV ++L+ + +IAVLE+GM+ GE
Sbjct: 115 SVGKTTTKDMVAAVLGE-KYRVLKTEGNLNNEIGVPMTLLRLSGEHEIAVLELGMNHAGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ + P++ ++ N+GDSH+E GS E + AK EIF K G V+N DDPL+
Sbjct: 174 IDYLSALVEPDVVLMTNIGDSHIEHFGSREKILEAKSEIFHHVKSGAFVVINGDDPLLNT 233
Query: 260 L--TVPRGVRKVFFGWRRGCDVR 280
L +P +V G G D R
Sbjct: 234 LPGKLPYAFTRV--GAGEGLDYR 254
>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
DSM 5476]
gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
DSM 5476]
Length = 467
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 15/247 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
N T+ ++A++V G++ + + D R++ F AI G+ FD H+FI P
Sbjct: 18 NLEALTLIQVAQAVRGELRNPADLTVNAVVIDNRLV--TTGCLFVAIRGERFDGHDFI-P 74
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTG 139
+ G + ++ D+ ++ V+ +T +L+++A CY R F G++VGVTG
Sbjct: 75 SAFESGAAAAVSDREIET-DRPYILVK-----DTREALLDLARCYRR--AFDGLVVGVTG 126
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK MIA L S G ++ GN NN +G+ ++ +D + AV+EMGMS GE
Sbjct: 127 SVGKTTTKEMIAAVL-SAGYKTLKTQGNLNNAIGLPRTIFELDSTYEAAVIEMGMSALGE 185
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L R A P+I V+ N+G SHLE+LG+ E++ +AK EI + G V+N D+ L+
Sbjct: 186 ISLLTRTALPDIGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLVINGDNDLLQT 245
Query: 260 LTVPRGV 266
+ + R V
Sbjct: 246 VQLDRPV 252
>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera micronuciformis F0359]
gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera micronuciformis F0359]
Length = 457
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 142/262 (54%), Gaps = 19/262 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++T EI + +IL+ G I I TDTR + ++ F A+ G+ FD H+FI
Sbjct: 3 MFTDGEIVLATGARILQQGRKNIRYSSIETDTRTIG--EDAVFVALRGEKFDGHDFIEQA 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGV 137
+ G VI + D G + +G+ + NTL + ++A Y R RF+ +V V
Sbjct: 61 V-SLGTTAVIVD------DAGRLYPDGDYTIFVVKNTLKAYQDLALYHRR-RFAIPVVAV 112
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK++T+S+IA L S NV Q+ N+NN +G+ +L+ + V+EMGM G
Sbjct: 113 TGSVGKTSTRSLIATVL-SQKYNVLQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGL 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
G+I ELA +A P I VV NVG SH+E LGS ++A+AKGE+ + VLN DD V
Sbjct: 172 GQIKELADIAEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRV 231
Query: 258 ANLTVPRGVRKVFFGWRRGCDV 279
A + + V FG + V
Sbjct: 232 AAMAEKCKGKTVSFGIKENAPV 253
>gi|429503965|ref|YP_007185149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429485555|gb|AFZ89479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 456
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N +G + N
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEGRAVILVN 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|428207636|ref|YP_007091989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chroococcidiopsis thermalis PCC 7203]
gi|428009557|gb|AFY88120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chroococcidiopsis thermalis PCC 7203]
Length = 452
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 11/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L P F A+ G+ FD H F++ + KG + I + D +QV
Sbjct: 33 INTDTRSLKPG--DIFVALRGEKFDGHGFVATAVE-KGAIAAIVDGHYQG-DLPVLQVR- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A + R S+F ++GVTGSVGK+TTK +IA L + G NV +++ N+
Sbjct: 88 ----DTLQAYQQIASWWR-SQFHMPVIGVTGSVGKTTTKELIAAVLGTQG-NVLKTHANF 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+G+D D AV+EM M G+GEI L ++ARP I V+ NVG +H+E LGS
Sbjct: 142 NNEIGVPKTLLGLDTQHDFAVIEMAMRGRGEIALLTQIARPTIGVITNVGTAHIERLGSE 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
E +A+AK E+ E V +LN D+
Sbjct: 202 EAIAQAKCELLAEMPQNSVAILNYDN 227
>gi|429765545|ref|ZP_19297830.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium celatum DSM 1785]
gi|429185996|gb|EKY26959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium celatum DSM 1785]
Length = 462
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 152/263 (57%), Gaps = 23/263 (8%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI +++ GK++ + C D R + K+ F AI G+ F+A+ L
Sbjct: 11 MSFEEIVKALEGKVIVDNHYKNFNKFCIDNRKIE--KDNIFLAIKGEKFNANNVAIKALE 68
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ ++V N+D + EG G + NT+ +L+ +A Y RN + + +VGVTG
Sbjct: 69 DGASIAIV-DEV--NFD--LNEAEGKGIIIKVDNTIKALLRLATYYRN-KLNVKVVGVTG 122
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA AL S VF++ GN+N+ +G+ L ++ + +D+AVLEMGMS GE
Sbjct: 123 STGKTSTKDLIA-ALLSSKYKVFKTKGNFNSEIGLPLMILELTSDIDVAVLEMGMSDLGE 181
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI---FQESKLGDVCVLNADDPL 256
I LAR+A P+I + N+G SH+E L + E++ +AK EI F E+ ++ V+NA+D +
Sbjct: 182 IEVLARVATPDIAAITNIGLSHMEHLKTQENILKAKMEITTCFNEN---NILVINAEDKM 238
Query: 257 VANLTVPRGVRKVFFGWRRGCDV 279
+ N++ +G + G+ DV
Sbjct: 239 LKNIS-QKGYKLKKIGYNHEYDV 260
>gi|379723225|ref|YP_005315356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus 3016]
gi|386725948|ref|YP_006192274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus K02]
gi|378571897|gb|AFC32207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Paenibacillus mucilaginosus 3016]
gi|384093073|gb|AFH64509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus K02]
Length = 463
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 19/261 (7%)
Query: 28 TINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA G + P + DTR LA + + I G+ FD H F L
Sbjct: 5 TLGEIARMAGGTLADAAMADRPVKGVSKDTRTLA--EGNLYVPIIGEAFDGHNFAEAALE 62
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G G++ + + G + VE + L +L +A R + +VG+TGS
Sbjct: 63 -QGASGLLWQRDHGSGPTGAPLIYVE-----DALQALQQLATSYRRE-LAVRVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M A L S V ++ GN+NN +G+ L+L+ ++ +IAVLEMGMSG+GEI
Sbjct: 116 GKTTTKDMTAAVL-STTFRVHKTLGNYNNHIGLPLTLLQMNEDTEIAVLEMGMSGRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+R+A PEI ++ N+G++HL LGS ++ARAK EI + G V V + D+PL+ +
Sbjct: 175 LLSRLAEPEIAIITNIGEAHLLQLGSRLEIARAKAEILAGLQPGGVLVYHGDEPLLREVL 234
Query: 262 V---PRGVRKVFFGWRRGCDV 279
P+ R V FG D+
Sbjct: 235 PEWEPQDFRGVTFGREASNDL 255
>gi|337748309|ref|YP_004642471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus KNP414]
gi|336299498|gb|AEI42601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Paenibacillus mucilaginosus KNP414]
Length = 463
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 19/261 (7%)
Query: 28 TINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA G + P + DTR LA + + I G+ FD H F L
Sbjct: 5 TLGEIARMAGGTLADAAMADRPVKGVSKDTRTLA--EGNLYVPIIGEAFDGHNFAEAALE 62
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G G++ + + G + VE + L +L +A R + +VG+TGS
Sbjct: 63 -QGASGLLWQRDHGSGPAGAPLIYVE-----DALQALQQLATSYRRE-LAVRVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M A L S V ++ GN+NN +G+ L+L+ ++ +IAVLEMGMSG+GEI
Sbjct: 116 GKTTTKDMTAAVL-STTFRVHKTLGNYNNHIGLPLTLLQMNEDTEIAVLEMGMSGRGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+R+A PEI ++ N+G++HL LGS ++ARAK EI + G V V + D+PL+ +
Sbjct: 175 LLSRLAEPEIAIITNIGEAHLLQLGSRLEIARAKAEILAGLQPGGVLVYHGDEPLLREVL 234
Query: 262 V---PRGVRKVFFGWRRGCDV 279
P+ R V FG D+
Sbjct: 235 PEWEPQDFRGVTFGREASNDL 255
>gi|427736982|ref|YP_007056526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rivularia sp. PCC 7116]
gi|427372023|gb|AFY55979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rivularia sp. PCC 7116]
Length = 454
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+RI+ P + F A G+ FD H+F++ + KG + I + N ++V
Sbjct: 33 IQTDSRIIKPG--EVFVAFRGEKFDGHKFVATAIE-KGAIAAIVDFEYENSQLPVLKV-- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + RN +FS ++GVTGSVGK+TTK +IA L + G V ++Y N+
Sbjct: 88 ---TNTLETYQKIAQWWRN-QFSIPIIGVTGSVGKTTTKELIAGVLSTQG-RVHKTYANF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G G+I EL ++ RP I V+ NVG +H+E L S
Sbjct: 143 NNEIGVPKTLLELVAEHDYAVIEMAMRGLGQIAELTQITRPTIAVITNVGTAHIELLKSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ E V +LN D+PL+
Sbjct: 203 EAIAQAKCELLAEMPKDGVAILNYDNPLL 231
>gi|352684904|ref|YP_004896889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus intestini
RyC-MR95]
gi|350279559|gb|AEQ22749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus intestini
RyC-MR95]
Length = 459
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 133/232 (57%), Gaps = 11/232 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F A+ G+ FD H++++ L KG + + + + V
Sbjct: 26 VSTDSRSIGPG--TLFVALRGEKFDGHDYVAAAL-EKGATAALVDHNPGVAPQKCILVP- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A R S+ + ++ +TGS GK++TK M A L + NV ++ N+
Sbjct: 82 ----DTLKAYQEIASAYRLSKKNLKVIAITGSNGKTSTKDMTAAVLAA-RYNVVKTQANF 136
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ ++L+ I ++AV+EMGM G G+I E+ ++A P+ ++ NVG++HLE LGSL
Sbjct: 137 NNEIGLPMTLLRIKDNTEVAVVEMGMRGLGQIREMKQIAYPDAAIITNVGETHLELLGSL 196
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
E++A+AK EI ++ + VLNADDP V+ + VR +G CDVR
Sbjct: 197 ENIAKAKSEILEDFTKDNWAVLNADDPRVSVMRTGASVRT--YGIDHDCDVR 246
>gi|342215281|ref|ZP_08707931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 780 str. F0422]
gi|341588667|gb|EGS32052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 780 str. F0422]
Length = 454
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 138/273 (50%), Gaps = 16/273 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF--ISPEL 82
+T+ E+ E+ G + TDTR + KN F A+ G FD H+F ++ E
Sbjct: 4 FTVQEVLEATQGFYAGTSTCSFADVSTDTRTIG--KNGLFVALEGMTFDGHDFLTVAKER 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V G + +G V +E +TL + +A Y R RF ++G+TGS G
Sbjct: 62 GATGAVVKRGKTI-----EGLVCIEVE---DTLQAYQQLATYHRR-RFPIPIIGITGSSG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MI+ LE V ++ N+NN +GV L+ + D+ VLEMGM G G+I E
Sbjct: 113 KTTTKEMISAVLEK-AFTVLKTEKNYNNEIGVPKMLLQLTEDHDVCVLEMGMRGLGQIAE 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A P I V+ NVG SH+E LGS E++ +AK E+ + VLN DD V +
Sbjct: 172 LAEIAEPTIGVITNVGTSHIELLGSQENIGKAKQELIEALPSTGAAVLNHDDSFVLPMEQ 231
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
+ + +G + G V+ + + G+ V
Sbjct: 232 VTDAKVMTYGMQEGSHVQGTQLEYTSKGINFTV 264
>gi|342217815|ref|ZP_08710453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 135-E]
gi|341592802|gb|EGS35662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 135-E]
Length = 458
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 138/240 (57%), Gaps = 12/240 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ E+ E+ ++L + + TDTR L + F A+TG F+ H+F+ E
Sbjct: 4 FTVQEVKEATKAQVLMAPKSRLEVFQHVDTDTRTL--TQQSLFVALTGDRFNGHDFV-LE 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG G++ ++ N + + +TL + +A + R RFS ++ VTGSV
Sbjct: 61 AVKKGATGIVVSE--NRPEYRSLDAIVFLVADTLQAYQQLAQFHRR-RFSIPVIAVTGSV 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++T+++IA L S NV Q+ N+NN +G+ +L+ +D+ ++ V+EMGM G G+I
Sbjct: 118 GKTSTRNIIASVL-SQKFNVCQTEKNFNNEIGLPKTLLQLDKTHEVCVVEMGMRGLGQIA 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA +A P + VV NVG SH+E LGS+E++ARAK E+ + + +LN DD VA ++
Sbjct: 177 ALASIAEPTVGVVTNVGKSHIELLGSIENIARAKAELVEALSAEGIAILNQDDSRVAAMS 236
>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus halophilus Nc4]
gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus halophilus Nc4]
Length = 448
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 11/207 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ GQ+FD H F++ + KG + Q + QVE
Sbjct: 24 VSTDTRSMTPGA--LFVALKGQNFDGHAFVA-QAREKGASAALLEQTIED---SLPQVE- 76
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L +A Y R RF +V VTGS GK+T K MIA L G +V + GN
Sbjct: 77 --VADARTALGQLATYWRQ-RFEHPVVAVTGSNGKTTVKEMIASVLGGAG-SVLATQGNL 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+G+D + AV+EMG + EI L+ + RP++ ++ N G +HL+ G L
Sbjct: 133 NNDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRPQVALITNAGPAHLDGFGDL 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDP 255
+ VARAKGEIFQ G V VLNADDP
Sbjct: 193 KGVARAKGEIFQGVNPGGVAVLNADDP 219
>gi|421074499|ref|ZP_15535530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans JBW45]
gi|392527370|gb|EIW50465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans JBW45]
Length = 452
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 147/257 (57%), Gaps = 12/257 (4%)
Query: 27 WTINEIAESVNGK-ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+ + G I+ P G + TDTR + K F + G++FD HEFI +
Sbjct: 4 FTVEEVCLATKGTLIVSAQPKGFTGVSTDTRTV--QKGDLFIPLIGENFDGHEFIHQAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG +GV+ + + Q+ ++L +L ++A + R RF+ +V +TGS GK
Sbjct: 62 -KGAIGVVFSHKNMTLPQ---QITAIFVTDSLLALQDLARFHRQ-RFTIPVVAITGSNGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M A L S +V ++ N+NN +G+ L+L+ + + ++AV+EMGM GKG+I +L
Sbjct: 117 TTTKDMAAAVL-SNQFHVLKTEANYNNEIGLPLTLLQLTQEHEVAVVEMGMRGKGQIRQL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +A P I ++ NVG++HLE LGS+E++A AK E+ + V +LN D+ V
Sbjct: 176 ANIALPTIAIITNVGETHLELLGSMEEIAAAKAELLEVIPENGVSILNGDNVYVREKAKK 235
Query: 264 RGVRKVFFGWRRGCDVR 280
R VFFG + G D++
Sbjct: 236 AKSRIVFFGLQEG-DIK 251
>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Moorella thermoacetica ATCC 39073]
gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Moorella thermoacetica ATCC 39073]
Length = 465
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 16/255 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI +++ G ++ P ++ TD+R + P F A+ G+ FD H+FI L G
Sbjct: 5 TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPG--MAFVALKGERFDGHDFIGAALSG 62
Query: 85 KGC----VGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
G+QV + +QV+ +TL +L +A Y R G L+GVTG
Sbjct: 63 GAAAAIGTSFPGHQVVGLRPGQALIQVD-----DTLLALQKLAAYHRQKVLKGPLIGVTG 117
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK++IA L + + V ++ GN+NN +G+ ++L+ + AV+EM M GKGE
Sbjct: 118 SSGKTTTKNLIAAVLSPV-LKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGKGE 176
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA +ARP I V+ N+G +HL LGS+ ++A AKGE+ + VLN D+
Sbjct: 177 IASLAAIARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWCRR 236
Query: 260 LTVPRGVRKVFFGWR 274
L R VFF R
Sbjct: 237 LAATCPCRVVFFSTR 251
>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
Length = 456
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N +G + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEGRAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLKELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLRQKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
maris DSM 8797]
gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
maris DSM 8797]
Length = 470
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 137/248 (55%), Gaps = 10/248 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGFVQVE 107
I D+R ++ FFAI G+ FD H+F++ L G V +V + + ++V+
Sbjct: 30 ISIDSR--TAKEDDLFFAIQGKRFDGHQFVNQALTRGAAACVVKRGEVTDPGSQLLLEVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+VN ++L+ A + R + S ++GVTGSVGK+TT+SMI AL S + QS N
Sbjct: 88 ---DVN--HALMQFARWYREQQ-SARVIGVTGSVGKTTTRSMIYTALSSCLTGI-QSPAN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN GV LS+ GI+ + AVLE+ S GEI ELA +A P+I V+ +G SHLE G+
Sbjct: 141 FNNEFGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQIGVITAIGHSHLEHFGT 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
L+ +A KGE+F++ + ++ DDP L RKV G D++ V+ +
Sbjct: 201 LQQIAETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKVRIGLGENNDLQAVSIEQD 260
Query: 288 NGGLGVQV 295
G+ +V
Sbjct: 261 QQGISFRV 268
>gi|386813907|ref|ZP_10101131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[planctomycete KSU-1]
gi|386403404|dbj|GAB64012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[planctomycete KSU-1]
Length = 468
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 145/275 (52%), Gaps = 17/275 (6%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ E A++VNG++ K + TD+R + FFAI G+HF+ H+FI +
Sbjct: 5 SFEEAAKAVNGQLTFADKNARIRGVSTDSRNV--QNGDLFFAIPGEHFNGHQFIVQAI-D 61
Query: 85 KGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G +GV+ ++ KG +QV NT+ +L ++A Y R + ++G+TGS
Sbjct: 62 DGAIGVVVSREHTLDLKGRSSSIIQV-----ANTITALGDLAKYYR-QKLGTRIIGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M L V +S ++NN +GV +++ I+ VLEMG + GEI
Sbjct: 116 NGKTTTKEMTYHLLSCFSPTV-KSQKSFNNFIGVPITIFEIENKHRYGVLEMGTNAPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L L+ ++ PEI V++N+ +HLE LGS+E VARAKGEI + + G V V N D+P +
Sbjct: 175 LRLSEISNPEIAVIVNISKTHLEGLGSIEGVARAKGEILENIRTGGVFVYNIDNPWCITI 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
+ V FG+ +R + N G + +
Sbjct: 235 ADRYKGKSVSFGFNHHAQIRCTDVKKKNTGYMITI 269
>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermosediminibacter oceani DSM 16646]
gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermosediminibacter oceani DSM 16646]
Length = 461
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 143/264 (54%), Gaps = 24/264 (9%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T E+A++ G++ K + + TD+R L F + G FD H+FI
Sbjct: 4 LTYEEVAKATGGRVEKSFSGEVLGVSTDSRSL--KHGDLFVPLVGAKFDGHDFIKNAFEA 61
Query: 85 KG----CVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
C ++V N +K + V+ +T N+L+ +A + R S FS V +TG
Sbjct: 62 GASATLCAEDKRDRVLNLTLEKPVIFVD-----DTQNALLRLAGFYR-SFFSIPFVAITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK MIA L + V ++ GN+NN +G+ L+L ++ + V+EMGMSG GE
Sbjct: 116 SVGKTTTKEMIAAVL-TRRYRVLKNEGNFNNEIGLPLTLFRLEDH-QVGVVEMGMSGFGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ + +P + V+ N+G SH+E LGS E++ARAK EI + D+ VLNAD P
Sbjct: 174 ISRLSAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSP---E 230
Query: 260 LTVPRGV---RKVFFGWRRGCDVR 280
L RG R V+FG +G D+R
Sbjct: 231 LYAKRGTLTPRTVYFGIEKG-DIR 253
>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. JA-3-3Ab]
gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. JA-3-3Ab]
Length = 445
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 14/213 (6%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P +CTD+R L P F A+ G+ FD H+FI P+ KG V VI +
Sbjct: 25 PVQALCTDSRRLQPGSV--FVALRGERFDGHDFI-PQALSKGAVAVISQRPVEG---PHF 78
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
QV +TL + +A A +FS +V +TGS GK+TTK M+A AL G +V +S
Sbjct: 79 QVP-----DTLTAYQRIA-RAWREQFSIPVVAITGSAGKTTTKEMLAAALSRYG-SVLKS 131
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N NN +GVA +L+ + AVLEM M G GEI LA+MARP ++ ++G +H+
Sbjct: 132 EANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRRLAQMARPTHALITHIGTAHIGR 191
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK E+ QE G + VLN +DPL+
Sbjct: 192 LGSREAIAAAKCELLQELGQG-IAVLNGEDPLL 223
>gi|357008359|ref|ZP_09073358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus elgii B69]
Length = 469
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 20/238 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ EIA + G L G PG + DTR LA + + + G+ FD HEF +
Sbjct: 5 TLAEIA-VMAGGTLAQGTPGDAVIHGVSKDTRTLA--EGSLYVPLIGESFDGHEF-ADAA 60
Query: 83 YGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTG 139
+ +G + C N G + V+ +TL++L +A Y R + +VG+TG
Sbjct: 61 FERGAAASLWQTDCLNPPSGKPLILVD-----DTLSALQRLAQAYRRQLKVR--VVGITG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M L + + ++ GN+NN +G+ L+L+ +D +IAVLEMGMSG+GE
Sbjct: 114 SNGKTTTKDMTGAVLAT-AFRMHKTAGNYNNHIGLPLTLLELDDNTEIAVLEMGMSGRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
I L+R+A PE+ V+ N+GD+HL LGS ++ARAK EI G + + D+PL+
Sbjct: 173 IELLSRLAEPELAVITNIGDAHLLQLGSRTEIARAKTEILTGLLPGGALIYHGDEPLI 230
>gi|338814772|ref|ZP_08626758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetonema longum DSM 6540]
gi|337273331|gb|EGO61982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetonema longum DSM 6540]
Length = 457
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 155/284 (54%), Gaps = 18/284 (6%)
Query: 27 WTINEIAESVNGKILKWGPP------GIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+T++E+ + G I+ P + TD+R +A F A+ G+ FD H+++S
Sbjct: 4 FTLDEVCLATGGSIISDKPESKALLFASVSTDSRSIA--SGDLFIALQGETFDGHDYLS- 60
Query: 81 ELYGKGCVGVIGNQ--VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ KG G+I ++ D + V+ +TL +L ++A + R ++S ++ VT
Sbjct: 61 QARQKGAGGIIVSRRDASLPQDCPVILVQ-----DTLKALQDLARFHRQ-KYSIPVIAVT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK MI+ L S+ NV ++ N+NN +G+ L+L+ + + V+EMGM G
Sbjct: 115 GSNGKTTTKDMISAVL-SVRFNVLKTEANYNNEIGLPLTLLRLQPEHEAVVVEMGMRGME 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I LA++A P + V+ NVG++H+E LGS+E++A+AK E+ Q + VLN DD VA
Sbjct: 174 QIRALAQIALPNVAVITNVGETHIELLGSIENIAKAKAELVQAVAARGLVVLNGDDDRVA 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+ R +++G + V+ + A G+ + + +E
Sbjct: 234 KMRDLTEARVIYYGLKPKAGVKAENIRTAASGVTFDSLTDGRKE 277
>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Desulfotomaculum acetoxidans DSM 771]
gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
acetoxidans DSM 771]
Length = 457
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 155/281 (55%), Gaps = 15/281 (5%)
Query: 27 WTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+++EIA + + ++ G +CTDTR L P + FFA+ G+++DA++F+ +
Sbjct: 4 MSLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPG--ELFFALKGENYDANDFVE-QGK 60
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
K V+ ++V + + G +QV+ ++L +L +A Y R F+ ++GVTGS
Sbjct: 61 AKQAAAVVVSRVLSAVNSGTAVLQVQ-----DSLKALQALARYNRQ-LFNIPVIGVTGSN 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA L + ++ GN+NN +G+ L+L+ +D + AV+EM M G+GEI
Sbjct: 115 GKTSTKDMIASVL-GVRYKTLKTSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEID 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L ++ARP V+ +G++HLE LGS E++A AKGE+ Q +L+ + L L
Sbjct: 174 FLCQLARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLA 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+ +F+G D+R Q + G V+ + +E
Sbjct: 234 GLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQE 274
>gi|336435665|ref|ZP_08615380.1| hypothetical protein HMPREF0988_00965 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001118|gb|EGN31264.1| hypothetical protein HMPREF0988_00965 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 456
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 142/270 (52%), Gaps = 17/270 (6%)
Query: 27 WTINEIAESVNGKIL----KWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ EIA++ G G + D+R + K+ F AI G D H FI P+
Sbjct: 4 MTLREIAQACKGTYFGSEESMGKEVSSVVIDSRKV--EKDSLFVAIRGARVDGHTFI-PK 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G + + + + +++VE + +L ++A + R S +VG++GSV
Sbjct: 61 TIEDGALCALSEEDLGDVSYPYIRVE-----SCTQALKDLAEHYRKS-LDIKVVGISGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA LE NV ++ GN+NN +GV L++ I ++AVLEMG+SG GE+
Sbjct: 115 GKTSTKEMIASVLEQ-KFNVLKTEGNFNNEIGVPLTIFRIREEHEVAVLEMGISGFGEMT 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+MARP+I V N+G +HLE LGS + + +AK E+ +LN DD +A+
Sbjct: 174 RLAKMARPDICVFTNIGCAHLEQLGSRDGILKAKTEMIAYMNPDGSILLNGDDDKLASYL 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
G++ V FG D A Q+ N GL
Sbjct: 234 PENGIKPVRFGLHTENDFH--AEQIENQGL 261
>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus CCSD1]
gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus CCSD1]
Length = 461
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 145/265 (54%), Gaps = 24/265 (9%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGNLKDKVMGISTDSR--KVKKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVN------TLNSLVNMACYARNSRFSGVLVGVTG 139
G VI ++ N V+ + +VN TL +L +A Y +F+ + VTG
Sbjct: 63 GASAVITARLDN------VECLKDFSVNVIYVNETLEALHKIASYYI-KKFNIPFIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGM+G GE
Sbjct: 116 SSGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + +P++ V N+G +H+E LGS E++ +AK E+ ++ K +V VLNADD +++
Sbjct: 175 IRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSK 234
Query: 260 LTVPRGVRKVFFGWRRG----CDVR 280
+ + + +G + G CD+
Sbjct: 235 IPLQYSSKYYRYGIKSGEIKACDIE 259
>gi|452854494|ref|YP_007496177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452078754|emb|CCP20505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 456
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N + + N
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVN 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
gi|149834281|gb|EDM89361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus obeum ATCC 29174]
Length = 456
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 12/243 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K+ F I G+ DAH FI P++ KG + + + D ++QV+
Sbjct: 31 ITTDSRKI--EKDCLFVPIVGERVDAHRFI-PDVMTKGALATLSERELPEADYAYIQVDA 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+L ++ ++A + + +VG+TGSVGK++TK +IA L+ ++ GN+
Sbjct: 88 -----SLQAVKDIAEFYL-EQLQIPVVGITGSVGKTSTKEVIASVLKE-KYRTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + IAVLEMG+S GE+ L ++A+P+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ V +AK EIFQ K VLN DD + + GV+ VFFG DV A Q+ +
Sbjct: 201 DGVLKAKTEIFQSMKPNGHIVLNGDDDKLITVREYNGVKPVFFGLNSERDV--YADQIES 258
Query: 289 GGL 291
GL
Sbjct: 259 KGL 261
>gi|433655386|ref|YP_007299094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293575|gb|AGB19397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 457
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 152/278 (54%), Gaps = 17/278 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I ++ EI ++ GK+L G + I D+R + + + F + G++F+ F+
Sbjct: 2 ILSVKEIIDATGGKLLS-GDINLTISGISIDSRTIK--EGELFIPLKGENFNGEMFVEDA 58
Query: 82 L-YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
L G + N V ++K + V+ NT +L +A Y R +F + VTGS
Sbjct: 59 LKIGSASLTESVNNVGR-YNKPVIFVD-----NTKEALHKIAKYYR-EKFQIPFIAVTGS 111
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MI L S+ NV ++ GN+NN +G+ L++ +++ D+A++EMGMSG GEI
Sbjct: 112 NGKTTTKDMIYDVL-SMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEI 170
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P + V N+G +H+E LGS E++ +AK E+ + K G +LNADD ++ L
Sbjct: 171 RRLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKL 230
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
T +G + + +G G DV+ + + +V+++
Sbjct: 231 TNKKGPQYITYGIDNG-DVKAFDIEYKEESVKYKVIID 267
>gi|443323025|ref|ZP_21052036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 73106]
gi|442787206|gb|ELR96928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 73106]
Length = 450
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 125/206 (60%), Gaps = 7/206 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R L P + F A+ G++FD H+FI L +G + +I +Q + K Q+
Sbjct: 33 ISTDSRFLQPG--EAFLALKGENFDGHDFIESAL-SRGAIALIVDQDLSV--KLLTQIPL 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + R ++ S +VGVTGSVGK+TTK +I L + G V ++ GN+
Sbjct: 88 FRVNNTLTAYQEIAHWWR-TQLSIPVVGVTGSVGKTTTKELIGGILATQG-RVLKTEGNY 145
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ID + D AV+EM M G+GEI L ++A P I V+ NVG +H+ LGS+
Sbjct: 146 NNEIGVPKTLLKIDSSHDYAVIEMAMRGRGEIARLTQIASPTIGVITNVGTAHIGRLGSI 205
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ +ARAK E+ + + V VLN D+
Sbjct: 206 DAIARAKCELLAQMQPTGVAVLNHDN 231
>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
ATCC 7061]
gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
ATCC 7061]
Length = 454
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 140/269 (52%), Gaps = 17/269 (6%)
Query: 28 TINEIAESVNGKI--LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+N+IA+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVS--KGALFIPLIGEHFNGHTFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N G + + + L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQKEANPPFGVPVILVDDTLAALQQLAKSYLKEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQTT-YQVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A PE V+ N+G+SH++ LGS E +A AK EI + K D+PL+ +
Sbjct: 175 FLSNLAEPETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTFYYLGDEPLIRDRA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAA-QVANG 289
+ FG CD+++ Q+A G
Sbjct: 235 TALSQQVKTFGEAEDCDIKVTHINQLAEG 263
>gi|428204296|ref|YP_007082885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pleurocapsa sp. PCC 7327]
gi|427981728|gb|AFY79328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pleurocapsa sp. PCC 7327]
Length = 452
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 125/210 (59%), Gaps = 9/210 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-VCNNWDKGFVQVE 107
I TDTR+L+P + F A+ G+ FD HEFI + KG + ++ + + N+ K Q +
Sbjct: 33 ITTDTRLLSPG--EIFLALKGERFDGHEFIETAIE-KGAIAIVTERDLSVNFPKKVPQFK 89
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
NTL + +A + R RF ++GVTGSVGK+TTK +IA L + G V ++ N
Sbjct: 90 VK---NTLEAYQKIARWWRE-RFDIPVIGVTGSVGKTTTKELIAAVLSTTG-KVHKTQAN 144
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+ + D A++EM M +GEI L +++RP + ++ NVG +H+ LGS
Sbjct: 145 YNNEIGVPKTLLELGAEHDYAIIEMAMRARGEIALLTQISRPTVGIITNVGTAHIGRLGS 204
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+ +A+AK E+ + + +LN D+PL+
Sbjct: 205 EKAIAQAKCELLAQMPHTSIAILNHDNPLL 234
>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 466
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 24/258 (9%)
Query: 29 INEIAESVNGKILKWGPPGIIC----TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIA G+I + G GI+ TD+R + K F + G+ FD H+F S
Sbjct: 6 LAEIAAMCGGQIREAGDAGIVVQGVVTDSRQI--TKGCLFVPLAGERFDGHDFAS----- 58
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVG 142
C+ KG V ++L+ + A++ + +VG+TGS G
Sbjct: 59 -DCLQAGAGACLWALSKG---TPPGPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK ++ AL S V ++ GN+NN +G+ L+++ + +IAVLEMGMSG+GEI
Sbjct: 115 KTTTKDLV-YALLSTTYKVHKTKGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIEL 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L+++ PE VV N+G+SHL LGS E++ARAK EI K G + + N D+PL+ +
Sbjct: 174 LSKIGEPETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLA 233
Query: 263 ------PRGVRKVFFGWR 274
P G++ FG R
Sbjct: 234 EPSTVKPEGLQTATFGLR 251
>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus 1942]
gi|419823022|ref|ZP_14346585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus C89]
gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus 1942]
gi|388472829|gb|EIM09589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus C89]
Length = 455
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 141/260 (54%), Gaps = 18/260 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +IAE V G + I+ TDTR L KNQ F +TG++F+ H F+ + +
Sbjct: 5 TAKKIAEMVKGTLTDPTYENIVIQGVATDTRKL--EKNQLFIPLTGENFNGHTFVG-QAF 61
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V+ N+ N D+ + V+ +TL +L ++ A ++GVTGS
Sbjct: 62 ENGVSAVLWNKSEPNPPQDQAVILVD-----DTLGALQELSK-AYLQELGTRVIGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L++ V ++ GN+NN +G+ L+++ + ++AVLEMGMSGKGEI
Sbjct: 116 GKTTTKDMLHAVLQT-QFRVHKTEGNFNNHIGLPLTVLSMPEDTEVAVLEMGMSGKGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L R+A PE V+ N+G+SH++ LGS E +A AK EI K + + D+PL+ +
Sbjct: 175 LLTRLANPEAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYIGDEPLLNKRS 234
Query: 262 VPRGVRKVFFGWRRGCDVRL 281
R FG G D +L
Sbjct: 235 Y--SCRTKTFGADEGNDYQL 252
>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Ruminococcus obeum A2-162]
Length = 456
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 137/243 (56%), Gaps = 12/243 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K+ F I G+ DAH FI P++ KG + + + ++ D ++Q+
Sbjct: 31 ITTDSRKI--EKDCLFVPIVGERVDAHRFI-PDVMAKGALATLSERELSDADYPYIQI-- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + ++G+TGSVGK++TK +IA L+ ++ GN+
Sbjct: 86 ---TSSLQAVKDIAEFYLQ-QLQLPVIGITGSVGKTSTKEVIASVLKE-KYRTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + IAVLEMG+S GE+ L R+A+P+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLREDDQIAVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ V +AK EIF+ VLN DD +A + GV+ VFFG DV A Q+ +
Sbjct: 201 DGVLKAKTEIFRSMLPSGHIVLNGDDDKLATVEGYHGVKPVFFGLDAKRDV--YADQIVS 258
Query: 289 GGL 291
GL
Sbjct: 259 RGL 261
>gi|383753244|ref|YP_005432147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365296|dbj|BAL82124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 455
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 148/264 (56%), Gaps = 18/264 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T++EI ++++ KI K + TDTR ++ F A+ G+ F+ +F + E
Sbjct: 1 MFTLDEIVKAISAKIYKEEKKDFSAVVTDTRKISAG--VLFVALKGERFNGEDF-AAEAL 57
Query: 84 GKGCVGVIGNQVC--NNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG GV+ ++ C DK +QV +TL + +A R+ +V +T
Sbjct: 58 EKGAAGVVVSENCAQEQLDKCQGTVLQV-----ADTLTAYQLIAKAWRDKFPQIPVVAIT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK + A L + G +V ++ N+NN +G+ L+L+G+ AV+E+GM G
Sbjct: 113 GSNGKTTTKDLTAAVLSAKG-DVLKTQANFNNEIGLPLTLLGLKAEHKAAVVEIGMRGFH 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I LA +A P+I +V NVG++H+E LGSLE++A+AK E+ + G +LNAD+ VA
Sbjct: 172 QIDALAPIASPQIGIVTNVGETHMELLGSLENIAKAKQELVEAIPAGGTVILNADNKYVA 231
Query: 259 NL--TVPRGVRKVFFGWRRGCDVR 280
+ GV+ + FG + DV+
Sbjct: 232 GMGSAAKEGVKVMTFGIEKDADVK 255
>gi|334133989|ref|ZP_08507524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF7]
gi|333608497|gb|EGL19794.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF7]
Length = 474
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 139/263 (52%), Gaps = 27/263 (10%)
Query: 25 PIWTINEIAESVNGKILKWGPPG-----------IICTDTRILAPNKNQWFFAITGQHFD 73
P+ TI E+A K+L PPG + TDTR +AP F + G+ FD
Sbjct: 5 PLTTIAELA---GAKLLM--PPGPDNGADGIVIDAVSTDTRTIAPG--SLFVPLVGERFD 57
Query: 74 AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
HEF + +G + + +TL +L +A R S +
Sbjct: 58 GHEFAPDAAAKGASAALWLESREEGRPEGLPLLLVD---DTLTALQKLAHAYRKS-LNVK 113
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
+VG+TGS GK+TTK M+ L ++ NV ++ GN NN +G+ L+L+ +D ++AV+EMG
Sbjct: 114 VVGITGSNGKTTTKDMMGAVLGTV-YNVHRTKGNLNNHIGLPLTLLQLDDTTEVAVVEMG 172
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
MSG+GEI L+ +A P+I V+ +GD+HL LGS E++ARAK EI K G V + D
Sbjct: 173 MSGRGEIELLSEIAEPDIAVITMIGDAHLLQLGSREEIARAKTEILSGLKDGGTYVFHGD 232
Query: 254 DPL----VANLTVPRGVRKVFFG 272
+PL + ++ P + ++ FG
Sbjct: 233 EPLLPLVLPDMKQPARLSQIRFG 255
>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 7425]
gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 7425]
Length = 457
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 125/210 (59%), Gaps = 13/210 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGFVQVE 107
ICTDTR L P + F A+ G +FD H+F+ + +G + I +QV ++ + V+
Sbjct: 45 ICTDTRGLQPG--EVFLALRGANFDGHQFVQRAME-QGAIAAITDQVLPGDFPQLVVK-- 99
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + + + R++ F ++ VTGSVGK+TTK +IA L G +V ++ N
Sbjct: 100 -----DTLVAYQTLGRWWRDT-FQIPVIAVTGSVGKTTTKELIAAVLGLQG-SVLKTEAN 152
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+ + AV+EMGM G GEI L R+ARP+I V+ NVG +H+ LGS
Sbjct: 153 YNNEIGVPKTLLQLTTDHAYAVIEMGMRGLGEIASLTRIARPDIAVITNVGTAHIGRLGS 212
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ E V VLNAD+PL+
Sbjct: 213 REAIAQAKCELLAEMPTTSVAVLNADNPLL 242
>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
lentocellum DSM 5427]
gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
lentocellum DSM 5427]
Length = 456
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 153/271 (56%), Gaps = 26/271 (9%)
Query: 29 INEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
I +I +V GK ++ G P +I TD+R + N F + G FD HEFI +Y
Sbjct: 5 IQDIISAVGGKCIQEGLIKQPIEVITTDSR--SQVTNGLFVPLKGDRFDGHEFIKS-VYE 61
Query: 85 KGCVGVIG--NQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + ++V + W ++VE +T +L+++ Y RN +F+ +VG+TGS
Sbjct: 62 KGVIATLTMEDKVIDPRLWT---IKVE-----DTRQALLDLGHYYRN-QFTVPVVGITGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++TK M+A L S +V ++ GN+NN +G+ L+L +D + + AV+EMGM+ EI
Sbjct: 113 VGKTSTKEMVAAVL-SGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+ A PE+ V+ NVG SH+E+LGS E + +AK EI G + VLN D+ L++ +
Sbjct: 172 HRLSLAAAPEVAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDNDLLSTV 231
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+P KV +G D A +AN G
Sbjct: 232 GELP--FNKVTYGLNTSND--YYAEAIANEG 258
>gi|398309563|ref|ZP_10513037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus mojavensis RO-H-1]
Length = 457
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 132/236 (55%), Gaps = 16/236 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE V G + + TDTR L NQ F + G+HF+ H F+ P+ +
Sbjct: 5 TVKQIAEMVKGTLTNPQYENTVIHGVATDTRKL--ESNQLFIPLKGEHFNGHTFV-PQAF 61
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V+ N+ N ++ + VE +TL++L +A A ++GVTGS
Sbjct: 62 EAGVSAVLWNRSEPNPPENQAVILVE-----DTLSALQQLA-KAYLQELGTRVIGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHAVLQTR-YRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
L R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+
Sbjct: 175 LLTRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLL 230
>gi|394994546|ref|ZP_10387260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. 916]
gi|393804646|gb|EJD66051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. 916]
Length = 456
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 133/243 (54%), Gaps = 14/243 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ + +N ++ + V+
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWERSESNPPEERAVILVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L + V ++ GN
Sbjct: 88 -----DTLEALQTLAK-AYLEELGTRVIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 141 FNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 201 REGIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQA 258
Query: 288 NGG 290
G
Sbjct: 259 EEG 261
>gi|425469704|ref|ZP_18848619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9701]
gi|389880443|emb|CCI38826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9701]
Length = 454
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 138/242 (57%), Gaps = 25/242 (10%)
Query: 28 TINEIAESV---NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++N++A+ + N + + P ++ TD+R + P Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQNKGDISFSPDSLVSGINTDSRSIEPG--QAFLALKGDNFNGHDFIDMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVLV 135
+ KG +I +Q V V + N+ NTL + + + RN +F+ ++
Sbjct: 64 IE-KGAATLIVDQP--------VSVNSSKNIPVFLVHNTLETYQQLGHWWRN-QFTIPVI 113
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM
Sbjct: 114 AITGSVGKTTTKELIASLLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMR 172
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
G+GEI LA++A+P I V+ NVG +H+ LGS +A AK E+ ES G + VLN D P
Sbjct: 173 GRGEIALLAQIAQPTIAVITNVGTAHIGRLGSQAAIAEAKCELLAESPSGSIAVLNYDHP 232
Query: 256 LV 257
L+
Sbjct: 233 LL 234
>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis L1-82]
gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis L1-82]
gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis XB6B4]
Length = 470
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 133/238 (55%), Gaps = 15/238 (6%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ G+ D H+FI P+++ KG + V+ Q + +++VE +TL ++ +A
Sbjct: 43 LFIAVKGEKVDGHQFI-PQVFEKGALAVLSEQELSEPAGPYIRVE-----STLGAMKKLA 96
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R S +VG+TGSVGK++TK MIA L S NV ++ GN+NN +G+ L++ I
Sbjct: 97 AYYRRS-LDIKVVGITGSVGKTSTKEMIASVL-SQKYNVLKTEGNFNNEIGLPLTIFKIR 154
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
++AVLEMG+S GE+ LA MA P+I V+ N+G HLE+L + + + +AK E F+
Sbjct: 155 EQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHL 214
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
VLN DD + + G VF+G + A++A G + + EKE
Sbjct: 215 TPEGTAVLNGDDDKLCEKKMVNGKPVVFYGIGK-------EAKLAKTEQGEKYLAEKE 265
>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis M50/1]
Length = 470
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 123/210 (58%), Gaps = 8/210 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ G+ D H+FI P+++ KG + V+ Q ++ +++VE +TL ++ +A
Sbjct: 43 LFIAVKGEKVDGHQFI-PQVFEKGALAVLSEQELSDPAGPYIRVE-----STLGAMKKLA 96
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R S +VG+TGSVGK++TK MIA L S NV ++ GN+NN +G+ L++ I
Sbjct: 97 AYYRRS-LDIKVVGITGSVGKTSTKEMIASVL-SQKYNVLKTEGNFNNEIGLPLTIFKIR 154
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
++AVLEMG+S GE+ LA MA P+I V+ N+G HLE+L + + + +AK E F+
Sbjct: 155 EQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHL 214
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
VLN DD + + G VF+G
Sbjct: 215 TPEGTAVLNGDDDKLCEKKMVNGKPVVFYG 244
>gi|385263592|ref|ZP_10041679.1| hypothetical protein MY7_0312 [Bacillus sp. 5B6]
gi|385148088|gb|EIF12025.1| hypothetical protein MY7_0312 [Bacillus sp. 5B6]
Length = 445
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 133/243 (54%), Gaps = 14/243 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N ++ + V+
Sbjct: 20 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 76
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L + V ++ GN
Sbjct: 77 -----DTLEALQTLAK-AYLEELGTRVIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGN 129
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMSG+GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 130 FNNHIGLPLTVLAMPEDTEIAVLEMGMSGRGEIDFLSRLAEPEAAVITNIGESHMQDLGS 189
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 190 REGIAEAKLEIINGLREDGVLFYFGDEPLLRQKAYT--CRTTTYGAGADNDLRLKEIKQA 247
Query: 288 NGG 290
G
Sbjct: 248 EEG 250
>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus champanellensis 18P13]
Length = 454
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 125/235 (53%), Gaps = 14/235 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T+ EIA++V G + + I TDTR + P F A+ G FD H F + + +
Sbjct: 5 TLTEIAQAVGGTLSNCPDCAVTEISTDTRTITPGC--VFLALRGARFDGHTF-ARQACEQ 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G V VI + V D + V+ G +L+ A Y R +F VGVTGSVGK+T
Sbjct: 62 GAVAVISDHVIP--DCPCIVVDSTGK-----ALLAFAAYYRR-KFQPFFVGVTGSVGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK+MIAL L S ++ GN NN +G+ +L+G+D AV+EMGMS GEI L++
Sbjct: 114 TKNMIALVL-STHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSK 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
A P I V+ N+G SH+ L S E + RAK EI V+N DDP + L
Sbjct: 173 AAAPSIGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPL 227
>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
DSM 15981]
gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
DSM 15981]
Length = 476
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 145/270 (53%), Gaps = 23/270 (8%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ ++ E+ NG++L + I D+R ++ F I G+ DAH FI + G
Sbjct: 6 VKQVMEAANGRLLCGNEEQVLANISLDSRNMS--GLDLFVPIVGEKVDAHRFICQAI-GN 62
Query: 86 GCVGVI--GNQVCNNWDKGFVQVEGNGN-------------VNTLNSLVNMACYARNSRF 130
G V V ++ + +K E GN +T +L ++ Y RN R
Sbjct: 63 GAVAVFTSAHRDISQVEKAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRN-RL 121
Query: 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVL 190
S LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++VGV +++ I +IAV+
Sbjct: 122 SIPLVGITGSVGKTTTREMIAAAL-SAGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVI 180
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+GMS GE+ ++AR+A + VV N+G +H+E LGS E++ R K I + +
Sbjct: 181 ELGMSEPGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNPEGILFV 240
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
N DDPL+A++ G R + +G GC+ R
Sbjct: 241 NGDDPLLADIQAEGGRRIIRYGMSAGCEYR 270
>gi|384264052|ref|YP_005419759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|380497405|emb|CCG48443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
Length = 456
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N + + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLKELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|427730878|ref|YP_007077115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7524]
gi|427366797|gb|AFY49518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7524]
Length = 475
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR++ P + F A+ G+ FD HEF++ G I V N++ + V
Sbjct: 60 IQTDTRLIKPG--EVFVALRGEKFDGHEFVA----TAIAQGAIAAIVDFNYENSTLPVLK 113
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N TL + + + R+ RF ++GVTGSVGK+TTK +IA L + G V +++GN+
Sbjct: 114 VNN--TLEAYQKIGRWWRD-RFHIPVIGVTGSVGKTTTKELIAAVLGTQG-KVHKTFGNF 169
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ D AV+EM M G+G+I EL ++A P I V+ NVG +H+E LGS
Sbjct: 170 NNEIGVPKTLLQLNAEHDYAVIEMAMRGRGQIAELTQIAHPTIGVITNVGTAHIELLGSE 229
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A AK E+ E V +LN D+PL+
Sbjct: 230 EAIAEAKCELLAEMPQNSVAILNHDNPLL 258
>gi|387896963|ref|YP_006327259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens Y2]
gi|387171073|gb|AFJ60534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens Y2]
Length = 445
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N + + +
Sbjct: 20 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 76
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 77 DTLEALQTLAKAYLKELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 131
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 132 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 191
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 192 GIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQAEE 249
Query: 290 G 290
G
Sbjct: 250 G 250
>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
lovleyi SZ]
gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
lovleyi SZ]
Length = 462
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 149/269 (55%), Gaps = 20/269 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++T ++ +G+++ GP I TD+R + P + F + G FD H++++
Sbjct: 1 MFTPEQLTTITHGRLI--GPETASVSGISTDSRTIKPG--ELFIPLRGDRFDGHDYLNGL 56
Query: 82 LYGKGCVGVIGNQVCN-NW---DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ I +CN +W + + +TL +L ++A R RF+ ++GV
Sbjct: 57 TERR-----IQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRK-RFALTMIGV 110
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK M+A L+ + + ++ GN NN++G+ L + AVLEMGMS
Sbjct: 111 TGSNGKTTTKEMLAAILDQVDQGL-KTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEP 169
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +A P I +VLN +HL+S+GS+E VA+AKGE+ Q + G + V+NADDP +
Sbjct: 170 GEIDRLAEIACPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRI 229
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
A+L R+ FG +RG +VR A Q
Sbjct: 230 ASLHQNPSARRTSFGIKRG-EVRAEAVQA 257
>gi|421732893|ref|ZP_16172009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407073254|gb|EKE46251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 456
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N + + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L S V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLKELGTR----VIGVTGSNGKTTTKDMLHAVL-STQYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
BAA-613]
gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
BAA-613]
Length = 477
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 138/271 (50%), Gaps = 22/271 (8%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ E+ G +L I D+R + + F I G+ DAH F+ +
Sbjct: 5 TVKELLEATGGNLLHGQEDQHVKHISLDSRTM--EGDDLFVPIVGERVDAHRFLCQAIAS 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV---------------NTLNSLVNMACYARNSR 129
V C K V+ + N +T +L ++ + R S
Sbjct: 63 GAAVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKS- 121
Query: 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
S LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++VGV +++ I ++ +I V
Sbjct: 122 LSLPLVGITGSVGKTTTREMIAEAL-SAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGV 180
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
+E+GMS GE+ +AR+AR + V+ N+G +H+E LGS E + K I + +
Sbjct: 181 IELGMSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILF 240
Query: 250 LNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
LN DDPL+A++ G +KV +G R CD R
Sbjct: 241 LNGDDPLLASVVPKEGRKKVLYGLGRDCDYR 271
>gi|386385650|ref|ZP_10070915.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
ligase [Streptomyces tsukubaensis NRRL18488]
gi|385666888|gb|EIF90366.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
ligase [Streptomyces tsukubaensis NRRL18488]
Length = 461
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 133/270 (49%), Gaps = 21/270 (7%)
Query: 27 WTINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ EIAES G + + G P G + DTR +AP F + G+ D H++
Sbjct: 4 LTLAEIAESTGGTLHRIGDPAARVTGPLSFDTRDIAPGG--LFACLRGRSADGHDYADRA 61
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR--NSRFSGVLVGVTG 139
+ G V V+ + G V + L MA AR +R+ G +VG+TG
Sbjct: 62 VAEGGAVAVLAARPV-----------GAPAVVVDDVLDAMARIARLVAARYQGTVVGITG 110
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ L + G V + ++NN +G +++ ++ VLEMG GKG
Sbjct: 111 SAGKTSTKDVLETVLAAHGPTVANAR-SFNNEIGFPVTVSRVEPDTRFLVLEMGARGKGH 169
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL + RP + VLNVG +HL GS E +A AK EI + V VLN DDPLVA
Sbjct: 170 IAELCGVVRPRVATVLNVGSAHLGEFGSREAIADAKAEIVRALPPDGVAVLNGDDPLVAA 229
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+ R + FG GC VR + A+G
Sbjct: 230 MAGETAARVLTFGTAPGCTVRAEDVRTASG 259
>gi|385799625|ref|YP_005836029.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Halanaerobium
praevalens DSM 2228]
Length = 465
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 121/219 (55%), Gaps = 2/219 (0%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F AI GQ+ D H+++ E G VI ++ + + +T +L +A
Sbjct: 41 LFIAIIGQNKDGHQYLK-EAVKNGASAVIVDRNSPAIQAAYPNLSVLKVEDTTKALQAIA 99
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
R+ ++G+TGS GK+TTK MI ++ S ++ GN+NN++G+ L+L+ +D
Sbjct: 100 FNYRHKFDDLKVIGITGSAGKTTTKDMI-FSVLSEKYYCLKTEGNYNNQIGLPLTLLRLD 158
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
D A+LEMGMSG EI LA++A PEI ++ N+ +HLE LGSLE++A+AK E+
Sbjct: 159 GREDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNL 218
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
D +LN D+ + + ++FG+ +G D R+
Sbjct: 219 TAADTAILNYDNQYTKKIGTNSKAQTIYFGFEKGADARI 257
>gi|375361120|ref|YP_005129159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|451348183|ref|YP_007446814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens IT-45]
gi|371567114|emb|CCF03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|449851941|gb|AGF28933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens IT-45]
Length = 456
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N + + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L S V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLKELGTR----VIGVTGSNGKTTTKDMLHAVL-STQYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|407980110|ref|ZP_11160908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. HYC-10]
gi|407413164|gb|EKF34892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. HYC-10]
Length = 454
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 141/269 (52%), Gaps = 17/269 (6%)
Query: 28 TINEIAESVNGKI--LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+ ++A+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVKQVAQMAGGTLSNQAFGEEQIHGVTTDTRKVS--KGALFIPLIGEHFNGHNFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N +G + ++ L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQNEANPPEGVPVILVEDTLSALQQLAKSYLAEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + DIAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQT-AYRVHKTDGNFNNHIGLPLTILAMPEGTDIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++A P+ V+ N+G+SH++ LGS E +A AK EI + K + D+PL+
Sbjct: 175 FLSKLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKSDGIFYYLGDEPLLRARA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAA-QVANG 289
R FG CD+++ Q+A G
Sbjct: 235 NELTRRAKTFGEADDCDIKVTHINQLAEG 263
>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
29799]
gi|150270953|gb|EDM98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 463
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 141/244 (57%), Gaps = 18/244 (7%)
Query: 24 SPIWTINEIAESVNGKIL-KWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
PI TI +I +V G+IL + + + TD+R + ++ F + G+ FD H +I
Sbjct: 2 EPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTI--HEGSLFVPLIGEQFDGHAYI 58
Query: 79 SPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ L G G + ++ G +++V+ +T +L ++A + + +F +V
Sbjct: 59 TSALEG-GAAACFTQRDRESYLPGKCYIRVD-----HTQRALRDLAVWYKK-KFDIPVVA 111
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+TTK M+A L V ++ GN N +G +L +D++ IAVLEMGM+
Sbjct: 112 VTGSVGKTTTKDMVAAVLGE-HYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNH 170
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
GEI ++ +A+P++ ++ N+GDSH+E LGS E++ +AK EIF +K G + VLN DDPL
Sbjct: 171 PGEIEVMSAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPL 230
Query: 257 VANL 260
+ L
Sbjct: 231 LRTL 234
>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
thermodenitrificans NG80-2]
gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
sp. G11MC16]
gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
thermodenitrificans NG80-2]
gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
sp. G11MC16]
Length = 460
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 14/251 (5%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE G+ +WG + + TDTR + + + G+ F+ H F+ E
Sbjct: 5 TVQQIAEMTGGRYANPEWGNIAVSGVSTDTRTI--QAGNLYVPLLGETFNGHAFVE-EAA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + + + + +TL++L +A R + +VGVTGS GK
Sbjct: 62 QKGAAAVLWAEAEGTPPESVPAIVVD---DTLSALQRLATRYRE-QLGLKVVGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ ++ DIAV+EMGMSG GEI +L
Sbjct: 118 TTTKDMIA-ALLSSQYRVQKTEGNLNNHIGVPLTLLALEEGTDIAVVEMGMSGFGEIEQL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--T 261
+ARP V+ N+G++HL+ LGS E +A+AK EI + + V + D+PL+A L +
Sbjct: 177 TTIARPNAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYHGDEPLLAELVPS 236
Query: 262 VPRGVRKVFFG 272
+P V FG
Sbjct: 237 LPLPQHVVTFG 247
>gi|440681553|ref|YP_007156348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena cylindrica PCC 7122]
gi|428678672|gb|AFZ57438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena cylindrica PCC 7122]
Length = 451
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 15/229 (6%)
Query: 32 IAESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV 90
+A VN + GI + TDTRIL P + F A+ G+ FD H+F+ + +
Sbjct: 15 LANPVNVSVSALAQLGIGMQTDTRILQPG--EVFMALRGEKFDGHDFVEIAIAKGAIAAI 72
Query: 91 IGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
+ N GF +QV+ +TL + +A + R+S F+ ++GVTGSVGK+TTK
Sbjct: 73 VDYDYKN---PGFPVLQVK-----DTLKAYQQIARWWRDS-FAIPVIGVTGSVGKTTTKE 123
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
+IA L + G V ++YGN+NN +GV +L+ + D AV+EM M G+G+I EL ++A+
Sbjct: 124 IIAAVLATQG-RVHKTYGNFNNEIGVPKTLLELGAEDDFAVIEMAMRGRGQIAELTQIAK 182
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
P I V+ NVG +H+E LGS +A AK E+ E V +LN D PL+
Sbjct: 183 PTIGVITNVGTAHIELLGSELAIAEAKCELLAEMPGDSVAILNHDSPLL 231
>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister invisus DSM 15470]
gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister invisus DSM 15470]
Length = 459
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ EI ++V+G +L+ G + TDTR ++P + F A+ G FD H F++
Sbjct: 4 FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPG--ELFIALQGNTFDGHHFLNDACI 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+ +I + F V +V NT +L +A + R +F +V VTG
Sbjct: 62 NGASMVIISER------SSFKAVPRTVSVILVKNTQTALEALAHFYR-MKFDIPVVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK+MIA AL + +NV + N+NN +G++L+L+ + + V+EMGM G G+
Sbjct: 115 SNGKTTTKNMIA-ALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL R+A P I VV NVG SH+ LGS E++A+AKGE+ + + +LN DDP V
Sbjct: 174 IAELCRIAAPTIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPYVIR 233
Query: 260 L 260
+
Sbjct: 234 M 234
>gi|403386629|ref|ZP_10928686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. JC122]
Length = 461
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 141/242 (58%), Gaps = 22/242 (9%)
Query: 27 WTINEIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+INEI ++NGK++ G G + D+R K FFA+ G++FD H ++
Sbjct: 4 LSINEIVNALNGKLILNGNIGNFKSVSIDSR--KVEKGNIFFALKGENFDGHNYLKQCSE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQ-------VEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ ++ N+ N+ K ++ VE +T +L ++A Y R + + +VG
Sbjct: 62 NGAGLLIVHNE---NFKKADIKEYTSVILVE-----DTRKALRDLAEYYR-KKINIKVVG 112
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK++TK ++A AL S VF++ GN+NN VG+ L + ID + DIAVLE+GMS
Sbjct: 113 ITGSTGKTSTKDLVAAAL-SEKYKVFKTKGNFNNEVGLPLMVFDIDNSYDIAVLELGMSN 171
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
EI L ++ARP++ V+ N+G SH+E+L + E++ +AK EI + ++ ++N D+ L
Sbjct: 172 LDEIHRLTKIARPDVAVITNIGISHIENLKTRENILKAKMEIVDFFEKDNILIVNGDNDL 231
Query: 257 VA 258
++
Sbjct: 232 LS 233
>gi|333978591|ref|YP_004516536.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822072|gb|AEG14735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 465
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 143/257 (55%), Gaps = 13/257 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ E+A+++NG++ + G G+ + D+R LA + FFA+ GQ D H+F+ P+
Sbjct: 4 MTLKEVAQAINGRLCQ-GDAGVRVRAVSIDSRSLA--GGELFFALRGQRHDGHDFV-PQA 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G GV+ ++ + + G + + +TL L +A Y R + ++G+TGS G
Sbjct: 60 LAAGAAGVVVERMVSALNPGAAVIHVD---DTLAVLQQLARYNREV-YRVPVIGITGSSG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK ++A AL S N ++ GN NN +G+ L+L+ +D V+EM M G GEI
Sbjct: 116 KTSTKDLVAAAL-SRRFNTLKTTGNRNNEIGLPLTLLELDERFQAVVVEMAMRGPGEIAF 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L R+ARP V+ N+G++H+E LGS++++ARAKGEI + VL+ D P +
Sbjct: 175 LCRLARPTGAVITNIGEAHIERLGSVDNIARAKGEILEAIGPEGFAVLHRDSPYIRREAG 234
Query: 263 PRGVRKVFFGWRRGCDV 279
R FFG DV
Sbjct: 235 RCRGRVYFFGIGGEADV 251
>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
gi|156867421|gb|EDO60793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium leptum DSM 753]
Length = 461
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 136/261 (52%), Gaps = 17/261 (6%)
Query: 29 INEIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI +V G + K P + T++R L P F I G+ DAH FI P
Sbjct: 6 ICEIVTAVGGALWKGNPNAEVTSVSTNSRELEPGA--LFVPIVGEKVDAHRFI-PMALDT 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGN----GNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G Q ++GF ++G G+ T +L A + R RF+ +VGVTGSV
Sbjct: 63 GAAACFTQQ---EPEEGFKYLDGAVIRVGD--TQKALQEFAAWYRK-RFTLPVVGVTGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GKS+TK MIA AL S G V ++ GN+N+++G+ L++ G+D +IAV+EMGMS GE+
Sbjct: 117 GKSSTKEMIAAAL-SQGKRVHKTAGNYNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEME 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P VV N+G SH+E L + E++ K I LN DDP++ L
Sbjct: 176 RLSAIASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLR 235
Query: 262 VPRGVRKVFFGWRRGCDVRLV 282
+ V++G CD R V
Sbjct: 236 ESYTGKIVWYGMESDCDYRAV 256
>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermaerobacter marianensis DSM 12885]
gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Thermaerobacter
marianensis DSM 12885]
Length = 477
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 137/261 (52%), Gaps = 16/261 (6%)
Query: 31 EIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
++A + G+++ G G+ D+R + P FFA+ GQ D H F++ L
Sbjct: 7 DVAAATGGRLVA-GSQGVTVEGGTVDSRRVRPGN--LFFALPGQRVDGHRFVAQALAAGA 63
Query: 87 CVGVIGNQVC----NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
VI + + G VE +T +L ++A + R R +VG+TGS+G
Sbjct: 64 RGAVIARPLAEVLPDGAPPGTAVVE---VADTRQALADLARWVRRRRTGLRVVGITGSLG 120
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M A L + V +S GN+N VG+ L+L+ ++ +AVLEM M G GEI
Sbjct: 121 KTTTKEMAAAVL-ARRFAVLKSAGNYNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIAR 179
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A P++ VV V +SHLE LGSLE VA+AKGE+ + V +LNA DP V +
Sbjct: 180 LAAIAEPDVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRAMAA 239
Query: 263 PRGVRKVFFGWR-RGCDVRLV 282
R + FG G DVR V
Sbjct: 240 RTRARVLTFGHDGEGADVRAV 260
>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Nitrosospira multiformis ATCC 25196]
gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrosospira multiformis ATCC 25196]
Length = 449
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 25/223 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----V 104
+ TD+R LA + + F A+ G +FD H+FI + +G +G + Q D+ + +
Sbjct: 11 VSTDSRALA--RGELFVALVGPNFDGHDFIV-QARDRGAMGALVQQDRLTGDQEYGIPLI 67
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL--------ES 156
+V+ NT +L +A Y R +RF+ LV VTGS GK+T K MIA L E
Sbjct: 68 RVQ-----NTRLALGQLAAYWR-ARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEE 121
Query: 157 LGVN----VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212
+ + V + GN NN +G+ L+L+ + AV+EMGM+ GEI L+R+A+P +
Sbjct: 122 MRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVA 181
Query: 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
++ N GD+H++ LGS+E VARAKGEIF+ + V+NADDP
Sbjct: 182 LITNAGDAHIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDP 224
>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus pumilus SAFR-032]
gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
pumilus SAFR-032]
Length = 454
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 17/269 (6%)
Query: 28 TINEIAESVNGKI--LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+ +IA+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVS--KGALFIPLIGEHFNGHTFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N +G + + + L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQKETNPPEGVPVILVDDTLAALQQLAKSYLKEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQTT-YQVHKTDGNFNNHIGLPLTILSMPKGTEIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P+ V+ N+G+SH++ LGS E +A AK EI + K D+PL+
Sbjct: 175 FLSNLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEPLIRERA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAA-QVANG 289
+ FG CD+++ Q+A G
Sbjct: 235 TQLSQQVKTFGEADDCDIKVTHINQLAEG 263
>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
gi|149753344|gb|EDM63275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dorea
longicatena DSM 13814]
Length = 456
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F AI G+ +AH+FI P+ G + V+ ++ D ++ VE
Sbjct: 31 VVIDSRKVQPG--YLFVAIDGERVNAHKFI-PDTVKAGAMCVVSHEDLGETDFPYILVES 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
G +L+++A R+S F +VG+TGSVGK++TK MIA L + +V ++ GN+
Sbjct: 88 TGQ-----ALLDIAKLYRDS-FDMKVVGITGSVGKTSTKEMIASVL-AQKYHVHKTLGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN G+ +++ + ++AVLEMG++ GE+ L+ +A P+I V+ N+G +HLE +
Sbjct: 141 NNEWGLPITIFDMPEDTEVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
E + + K ++ Q+ K G +LN DD L++ ++ +GV VFFG C R
Sbjct: 201 EGILQEKSQMIQDMKNGGSIILNGDDDLLSKMSPVKGVTPVFFGMGDNCAFR 252
>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
Length = 496
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 15/263 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+P+WT++++ + G++ WG +I TD+R + F A+ G++FDA +F
Sbjct: 30 QNPVWTLSQVLLATGGRL--WGDRTQAAFRLISTDSRTI--EAGDLFVALRGENFDAQQF 85
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ E KG G++ Q V V +TL +L ++A Y R ++ +
Sbjct: 86 VA-EAVAKGAAGLVLEQPPVE----PVPVPVVLVPDTLAALGDLAHYRRCRMRELQVLAI 140
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+T K M A L+ V ++ GN NN VG+ LSL+ ++ + AVLEMGM+
Sbjct: 141 TGSSGKTTVKEMTATILQRRQ-QVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRP 199
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI +A +A P+I + NV ++HL L ++ VARAKGE+F V+N DD V
Sbjct: 200 GEIARMAEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRV 259
Query: 258 ANLTVPRGVRKVFFGWRRGCDVR 280
L G +++ +G R VR
Sbjct: 260 RRLAARTGQQRITYGRTRNARVR 282
>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
15053]
gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
15053]
Length = 457
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 131/218 (60%), Gaps = 8/218 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G++ +AH+FI P+ KG + V+ ++ + D ++ VE G +L+
Sbjct: 40 KDYLFVAIDGENVNAHKFI-PDTIEKGALCVVSHEDLGDTDFPYILVESTGQ-----ALL 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A R+S F +VG+TGSVGK++TK MIA ++ S V ++ GN+NN G+ +++
Sbjct: 94 DIAKLYRDS-FDVTVVGITGSVGKTSTKEMIA-SVVSQKYKVHKTLGNFNNEWGLPITIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+D + ++ +LEMG++ GE+ L+ +A P+I V+ N+G +HLE + E + + K ++
Sbjct: 152 EMDESHEVVILEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMI 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
Q+ K G +LN DD L++ + +GV V FG C
Sbjct: 212 QDMKNGGSIILNGDDDLLSKMGPVKGVTPVLFGTNEDC 249
>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
Length = 496
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 15/263 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+P+WT++++ + G++ WG +I TD+R + F A+ G++FDA +F
Sbjct: 30 QNPVWTLSQVLLATGGRL--WGDRTQAAFRLISTDSRTI--EAGDLFVALRGENFDAQQF 85
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ E KG G++ Q V V +TL +L ++A Y R ++ +
Sbjct: 86 VA-EAVAKGAAGLVLEQPPVE----PVPVPVVLVPDTLAALGDLAHYRRCRMRELQVLAI 140
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+T K M A L+ V ++ GN NN VG+ LSL+ ++ + AVLEMGM+
Sbjct: 141 TGSSGKTTVKEMTATILQRRQ-QVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRP 199
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI +A +A P+I + NV ++HL L ++ VARAKGE+F V+N DD V
Sbjct: 200 GEIARMAEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRV 259
Query: 258 ANLTVPRGVRKVFFGWRRGCDVR 280
L G +++ +G R VR
Sbjct: 260 RRLAARTGQQRITYGRTRNARVR 282
>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
Length = 496
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 15/263 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+P+WT++++ + G++ WG +I TD+R + F A+ G++FDA +F
Sbjct: 30 QNPVWTLSQVLLATGGRL--WGDRTQAAFRLISTDSRTI--EAGDLFVALRGENFDAQQF 85
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ E KG G++ Q V V +TL +L ++A Y R ++ +
Sbjct: 86 VA-EAVAKGAAGLVLEQPPVE----PVPVPVVLVPDTLAALGDLAHYRRCRMRELQVLAI 140
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+T K M A L+ V ++ GN NN VG+ LSL+ ++ + AVLEMGM+
Sbjct: 141 TGSSGKTTVKEMTATILQRRQ-QVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRP 199
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI +A +A P+I + NV ++HL L ++ VARAKGE+F V+N DD V
Sbjct: 200 GEIARMAEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRV 259
Query: 258 ANLTVPRGVRKVFFGWRRGCDVR 280
L G +++ +G R VR
Sbjct: 260 RRLAARTGQQRITYGRTRNARVR 282
>gi|384158048|ref|YP_005540121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens TA208]
gi|384162853|ref|YP_005544232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
amyloliquefaciens LL3]
gi|384167074|ref|YP_005548452.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens XH7]
gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens TA208]
gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens LL3]
gi|341826353|gb|AEK87604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens XH7]
Length = 456
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 10/241 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N K + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPKERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQKLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGEGADNDLRLKEIKQAEE 260
Query: 290 G 290
G
Sbjct: 261 G 261
>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfurivibrio alkaliphilus AHT2]
gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfurivibrio alkaliphilus AHT2]
Length = 550
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 139/266 (52%), Gaps = 16/266 (6%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHE 76
+ +P+W+++++ + G++ WG ++ +D+R + F A+ G+ FD H
Sbjct: 29 AQNPVWSLDQVLLATGGRL--WGDRTEAVFRLVSSDSRTI--EAGDLFVALRGEKFDGHR 84
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
F++ E+ KG G++ + V +TL +L ++A Y R ++
Sbjct: 85 FVA-EVVRKGAAGLVLESPPEE----PLPVPVVLVADTLQALGDLAHYRRMQMKGLKVLA 139
Query: 137 VTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+TGS GK+T K M A +E V ++ GN NN +G+ LSL+ +D AVLEMGM
Sbjct: 140 ITGSSGKTTVKEMTAAIMEQGRGRQRVLKTRGNLNNLIGLPLSLLAVDAHHQYAVLEMGM 199
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ GEI +A +A+P+I + NV ++HL L + VARAKGE+F + V+N DD
Sbjct: 200 NRFGEIARMAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNRDD 259
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVR 280
P V L R++ FG + G VR
Sbjct: 260 PRVWRLAGKLPQRRITFGRKPGTTVR 285
>gi|389580282|ref|ZP_10170309.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfobacter postgatei 2ac9]
gi|389401917|gb|EIM64139.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfobacter postgatei 2ac9]
Length = 1000
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 155/298 (52%), Gaps = 38/298 (12%)
Query: 9 TLACTSKTTFRCPSNSPIWTINEIAESVN-GKILKWGPPGI----------ICTDTRILA 57
T ACT+ T R W + +++ ++ + WG + I TD+R ++
Sbjct: 505 TNACTNALTPRP------WDLADLSNAIGCDAVTVWGQKTVTDVKRAVFKGISTDSRTIS 558
Query: 58 PNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-VCNNWDKGFVQVEGNGNV---- 112
P+ F A+ G+HFD H FI P+L KG + + Q N +D ++ V
Sbjct: 559 PD--MVFLALAGEHFDGHNFI-PDLAEKGIIVFVVRQGYLNTFDLNQKRLMDKPRVCFFE 615
Query: 113 --NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
+TL +L +A Y R R + + +TGS GK++T+ M A + SL + + GN NN
Sbjct: 616 VPDTLAALGRLARYHR-MRSNARVAALTGSNGKTSTRKM-AEEIFSLHHDTLATQGNLNN 673
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
+G+ +L+ + + AV+EMGMS GEI L+ +A+P+I ++ N SH++ LGSL++
Sbjct: 674 EIGLPQTLLRLADIHEWAVVEMGMSNPGEIARLSAIAKPDIALITNTHGSHMQGLGSLDN 733
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK-------VFFGWRRGCDVRL 281
VARAK EIF+ G +L ADDP + L +G R+ + FG + DVRL
Sbjct: 734 VARAKAEIFKGLNPGGTAILFADDPRLEILV--QGARENPTTGSVMLFGTQSKSDVRL 789
>gi|350264710|ref|YP_004876017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349597597|gb|AEP85385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 457
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 132/240 (55%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L + Q F + G+HF+ H F+ P+ +
Sbjct: 5 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQQQLFIPLKGEHFNGHTFV-PQAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL++L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSEPNPPENQAVILVDDTLSALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGTR-YRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
>gi|384135268|ref|YP_005517982.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339289353|gb|AEJ43463.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 455
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 10/247 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D R L P F A GQ D H+F+ V V+ V V+V
Sbjct: 30 VAIDHRQLQPG--HAFVAFVGQRVDGHQFVDEAFRRGASVAVVTKDVKTALGP-CVRVP- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L ++ +A + R+ +F G +VG+TGS GK+TTK M+A AL +LG V+ S N
Sbjct: 86 ----NALKAVQALARWERD-QFEGPVVGITGSNGKTTTKEMVAAALGALGPCVYTS-ANQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D + VLEMGM G G+I EL +ARP I V+ ++G +H+E LGS
Sbjct: 140 NNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQ 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A AK E+ + VLN DDP + + R +++G CD+R + +
Sbjct: 200 ENIALAKTELIASLPKDGIAVLNGDDPWLRRMQHRTTARILWYGLSEACDIRATSVTWSQ 259
Query: 289 GGLGVQV 295
G+ +V
Sbjct: 260 EGMAFEV 266
>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus vortex V453]
gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus vortex V453]
Length = 472
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F I G+ FD HEF L D + VE
Sbjct: 30 VGTDSRTIQPG--NLFVPIVGEKFDGHEFAESVLASGAGAAFWQRDHQPVPDLPLILVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L ++A A S S +VG+TGS GK+T K M++ LE+ V ++ GN+
Sbjct: 87 ----DTLTALQSLAA-AYLSETSAKVVGITGSNGKTTVKDMVSALLETT-YKVHKTQGNY 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ + DI VLEMGMSG+ EI L+ +ARP++ V+ N+G++H+ LGS
Sbjct: 141 NNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCD 278
E++ARAK EI K G + + + D+PL+ + P G+ FG + D
Sbjct: 201 EEIARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKPEGLNTFTFGNQETND 256
>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
29176]
gi|197298772|gb|EDY33313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus lactaris ATCC 29176]
Length = 463
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 17/270 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPN-----KNQWFFAITGQHFDAHEFISPE 81
++ EIA + G G P ++ + +A + K+ F AI G D H FI P+
Sbjct: 4 MSLKEIAAACGGTY--HGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ +G + + Q + ++QV + +L ++A + R S +VG++GSV
Sbjct: 61 VMDQGAICSLSEQDLGDVTYPYIQV-----ASCTEALKDLAEHYRRS-LDIKVVGISGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA L S V ++ GN+NN +G+ L++ + + ++AVLEMG+S G++
Sbjct: 115 GKTSTKEMIASVL-SEKYCVLKTEGNFNNEIGLPLTVFNLRKEHEVAVLEMGISHFGDME 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA++ARP++ V+ N+G +HLE+LG+ + + + K +F +LN DD + T
Sbjct: 174 PLAKIARPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDDKLRGYT 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
RG++ V+FG C A Q+ GL
Sbjct: 234 SERGIQPVYFGLDPACPFH--AEQIQKMGL 261
>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
17244]
gi|169259342|gb|EDS73308.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerofustis stercorihominis DSM 17244]
Length = 457
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 134/236 (56%), Gaps = 13/236 (5%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+ +++ +NGKI++WG + D+R+ K FFA+ G + H+F + Y
Sbjct: 6 IDTLSKMINGKIIRWGKENEVSGVVIDSRL--AKKRSVFFALDGTEMNGHDF-ALSAYKN 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G V+ + D ++VE +TL +L +MA ++ RF V +TGS GK+T
Sbjct: 63 GACAVVVKREIEGADCFQIKVE-----DTLKALYDMAKSYKD-RFDIPFVALTGSAGKTT 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M A L S ++ GN+N+ GV L+L +++ +IAV+EMGM+ KGEI +++
Sbjct: 117 TKDMTASVL-SKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISE 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+ P++ ++ NVG +H+E+LGS E++ +AK EI + K G ++N DD + T
Sbjct: 176 LVEPDLAMITNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFFKDYT 231
>gi|425446483|ref|ZP_18826486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9443]
gi|389733267|emb|CCI02940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9443]
Length = 454
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
I TD+R + Q F A+ G +F+ H+FI + ++ V N+ V
Sbjct: 33 INTDSRSI--ESGQAFLALKGDNFNGHDFIDMAIEKGAATLIVDQPVSGNYSSNIPVFLV 90
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
Q NTL + +A + RN +F+ ++ +TGSVGK+TTK +IA L + G V ++
Sbjct: 91 Q-------NTLETYQQLAHWWRN-QFTIPVIAITGSVGKTTTKELIASVLATQG-KVHKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ +D D AV+EMGM G+GEI LA++A+P I V+ NVG +H+
Sbjct: 142 LANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGR 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS +A AK E+ ES + VLN D PL+
Sbjct: 202 LGSESAIAEAKCELLAESPSSSIAVLNYDHPLL 234
>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
Length = 461
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 143/265 (53%), Gaps = 19/265 (7%)
Query: 27 WTINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ EI E+ G LK G I D+R+ ++ F AI G++ DAH++I
Sbjct: 4 LTVKEIVEASKGN-LKNGEGSESVKAIVIDSRL--AKEDTAFVAIVGENNDAHKYIGS-A 59
Query: 83 YGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
Y GC I G + D ++V+ +T +L ++ Y + +F + +G+TG
Sbjct: 60 YDLGCRVFIVNKGKDIDIKSDMNIIEVD-----DTSKALGDIGHYYK-KKFDILFIGITG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TT+ M+ AL S + ++ N+NN GV L+L +D + + AV+EMGMSG GE
Sbjct: 114 SVGKTTTRDMVYAALSSERATL-KNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA M P++ V+ N+G SH+E+LGS E + +AK EI G+ V+N DD ++
Sbjct: 173 IEYLANMVNPKVAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLST 232
Query: 260 L-TVPRGVRKVFFGWRRGCDVRLVA 283
L R + FG+ + D+ VA
Sbjct: 233 LRDAERDYDLITFGFEKNNDIYCVA 257
>gi|420158077|ref|ZP_14664900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. MSTE9]
gi|394755225|gb|EJF38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. MSTE9]
Length = 467
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 142/259 (54%), Gaps = 20/259 (7%)
Query: 30 NEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA++ G+I+ P + TD+R + P F I G+ DAH F+ P G
Sbjct: 6 REIAQACGGRIIGGDPEREVTFVTTDSRKVGPGA--LFVPIVGERVDAHRFL-PGAAEAG 62
Query: 87 CVGVIGNQVCNNWDKG---FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
V+ Q +G ++ VE +T +L +A R RF +VGVTGSVGK
Sbjct: 63 AAAVLTQQPEEQRPEGACAWIAVE-----DTRAALQQIAGAYR-FRFPIPVVGVTGSVGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ALAL S NV ++ GN+N+++GV L++ + + AV+EMGMS GE+ L
Sbjct: 117 TTTKEMLALAL-SAERNVMKTEGNFNSQLGVPLTVFRLLPEHEAAVIEMGMSEFGEMARL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--T 261
A++ARP V+ N+G SH+E+L + E++ K I V LN DDPL+A L T
Sbjct: 176 AQVARPTCAVMTNIGISHIENLKTQENIRAEKLHITDAFTEDSVLFLNGDDPLLAQLRGT 235
Query: 262 VPRGVRKVFFGWRRGCDVR 280
+P + VFFG + CDV
Sbjct: 236 LPFHI--VFFGTQPWCDVH 252
>gi|425456928|ref|ZP_18836634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9807]
gi|389801846|emb|CCI19037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9807]
Length = 454
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
I TD+R + Q F A+ G +F+ H+FI + ++ V N+ V
Sbjct: 33 INTDSRSI--ESGQAFLALKGDNFNGHDFIDMAIEKGAATLIVDQPVSGNYSSNIPVFLV 90
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
Q NTL + +A + RN +F+ ++ +TGSVGK+TTK +IA L + G V ++
Sbjct: 91 Q-------NTLETYQQLAHWWRN-QFTIPVIAITGSVGKTTTKELIASVLATQG-KVHKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ +D D AV+EMGM G+GEI LA++A+P I V+ NVG +H+
Sbjct: 142 LANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGR 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS +A AK E+ ES + VLN D PL+
Sbjct: 202 LGSESAIAEAKCELLAESPSSSIAVLNYDHPLL 234
>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister microaerophilus UPII 345-E]
gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister microaerophilus UPII 345-E]
Length = 460
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 136/254 (53%), Gaps = 17/254 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ NEI ++ N +++ G+ + D+R + +N F A+ G+ FD H+F+
Sbjct: 4 FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTI--KENDLFIALKGERFDGHDFVINACK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+I + C ++ + V +T + ++A + R RF +V VTG
Sbjct: 62 KGASAVIISDSEC------LEKISEDCTVFLVKDTKKAFEDLAHFNR-MRFDIPVVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI+ AL S NV + N NN +G++L+L+ I + D V+EMGM G G+
Sbjct: 115 SNGKTTTKDMIS-ALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL +A+P I V+ NVG SH+ LGS E++A+AKGE+ Q + VLN DD V
Sbjct: 174 IKELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKK 233
Query: 260 LTVPRGVRKVFFGW 273
+ R +++G
Sbjct: 234 MGENFKGRVIYYGL 247
>gi|386757059|ref|YP_006230275.1| hypothetical protein MY9_0480 [Bacillus sp. JS]
gi|384930341|gb|AFI27019.1| hypothetical protein MY9_0480 [Bacillus sp. JS]
Length = 481
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE VNG + K+ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 29 TVKNIAEMVNGTLTNPKYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 85
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 86 EAGVAAVL-------WDRSEPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 138 SNGKTTTKDMIHAVLGTR-YRVHKTGGNFNNHIGMPLTVLAMPENTEIAVLEMGMSAKGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 197 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 256
>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 3502]
gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 19397]
gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. Hall]
gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 3502]
gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 19397]
gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. Hall]
Length = 462
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 149/263 (56%), Gaps = 27/263 (10%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVSKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRL 281
N + F ++ G D +
Sbjct: 234 NFESDK-----FKVYKIGTDKKF 251
>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A2 str. Kyoto]
gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A2 str. Kyoto]
Length = 462
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 149/263 (56%), Gaps = 27/263 (10%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRL 281
N + F ++ G D +
Sbjct: 234 NFESDK-----FKVYKIGTDKKF 251
>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens DSM 7]
gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens DSM 7]
Length = 456
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 10/232 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N K + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPKERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQKLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
+A AK EI + V D+PL+ R +G D+RL
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGEGADNDLRL 252
>gi|443633954|ref|ZP_21118130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443346150|gb|ELS60211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 471
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 132/238 (55%), Gaps = 20/238 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+HF+ H F+ P+ +
Sbjct: 19 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGEHFNGHTFV-PQAF 75
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL++L +A A ++GVTG
Sbjct: 76 DAGVAAVL-------WDRSEPNPPENQAVILVDDTLSALQQLAK-AYLQELGTRVIGVTG 127
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 128 SNGKTTTKDMIHAVLGTR-YRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGE 186
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+
Sbjct: 187 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLL 244
>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
16841]
gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
16841]
Length = 476
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 134/248 (54%), Gaps = 17/248 (6%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R++ K+ F + G+ D H FI P ++ KG + V+ + N ++ VE
Sbjct: 34 DSRLV--EKDYLFIPVRGEKVDGHSFI-PSVFEKGALAVLSEEKLENPAGPYILVE---- 86
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
NTL+++ +A R +VG+TGSVGK++TK MIA L + NV ++ GN NN
Sbjct: 87 -NTLDAMKKIAADYRRG-LDIKVVGITGSVGKTSTKEMIASVL-AQKYNVLKTEGNLNNE 143
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+G+ L++ I +AVLEMG+S GE+ L+ MA P+I V+ N+G HLE+L + + +
Sbjct: 144 IGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDGI 203
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
+AK E F + VLN DD + + V G VF+G + AA+VA
Sbjct: 204 LKAKTESFAHLTPDGIAVLNGDDDKLCDKKVVNGKPAVFYGIEK-------AAKVAETEE 256
Query: 292 GVQVVLEK 299
G + + EK
Sbjct: 257 GTKTLAEK 264
>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaplasma centrale str.
Israel]
gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
centrale str. Israel]
Length = 463
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 137/266 (51%), Gaps = 23/266 (8%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W + +V G L W G I DTR L P F AI G++FD H F+ PE +
Sbjct: 1 MWCAKSMGAAVRGLCLGKDWTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAF 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACY-ARNSRFSGVLVGVT 138
KG V + D+ +V G + +TL +L ++A R++R ++ +T
Sbjct: 58 SKGAVAAV-------VDEAYVPTADCGPLVAVKDTLQALHDIATMRLRDTR--AKVIAIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK +++ AL G V+ + N+NN +G+ L + + VLEMGM+ G
Sbjct: 109 GSAGKTTTKYVLSGALSKYG-KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
E+ L+R+ARP++ V+ NVG +HLE S+E V AK E+F K G + VLN D A
Sbjct: 168 EVDALSRIARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYA 227
Query: 259 NLTV---PRGVRKVFFGWRRGCDVRL 281
+ R + FG G DV++
Sbjct: 228 KMRAVAESYCARIISFGVGAGADVQI 253
>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera genomosp. type_1 str. 28L]
gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera genomosp. type_1 str. 28L]
Length = 458
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 148/273 (54%), Gaps = 18/273 (6%)
Query: 27 WTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ E+ ++ ++L G + TDTR L K F A+ G+ FD H+F+ +
Sbjct: 4 FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSL--QKGGLFVALKGERFDGHDFVL-Q 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV V ++ F + V +TL + +A + R RF+ ++ VTG
Sbjct: 61 AVAKGAAGV----VVAAREETFAALPVPVFAVPDTLRAYQALARFHRR-RFALPVIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++T+ MIA L S + V+Q+ N+NN +G+ +L+G+ + V+EMGM G G+
Sbjct: 116 SVGKTSTRQMIASVL-SQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P I VV NVG SH+E LGS E++A+AKGE+ VLN DD VA
Sbjct: 175 IAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAA 234
Query: 260 LT-VPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
+ + RG + + +G G VR Q + GL
Sbjct: 235 MAKLCRG-KVIGYGTSVGAAVRAGEIQTDDKGL 266
>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 553
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 14/214 (6%)
Query: 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGF--VQVE 107
TD+R + + + FFA+ G++FD H F+ + V+ + C W + VE
Sbjct: 39 TDSRTI--KRCEAFFALKGENFDGHAFVERAVRAGAVALVVSDLKCAELWQAELPTILVE 96
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE-SLGVNVFQSYG 166
+TL +L +A Y R + + LV +TGSVGK++T+ MIA AL +L V+ +
Sbjct: 97 -----DTLTALQKLAAYYRQN-YLHTLVAITGSVGKTSTREMIAAALRPTLAVSC--TGE 148
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV +++ + A D+AV+EMGM G++ +L+R+A+P+I V+ N+G H+E LG
Sbjct: 149 NLNNEIGVPQTVLKVRSACDVAVVEMGMDHAGDLTKLSRLAQPDIAVITNIGYCHIEQLG 208
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
S + RAK EI K V +LNADDP + L
Sbjct: 209 SQMAIMRAKAEIINGLKADGVLLLNADDPFLRQL 242
>gi|389574288|ref|ZP_10164353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. M 2-6]
gi|388426050|gb|EIL83870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. M 2-6]
Length = 454
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 144/272 (52%), Gaps = 23/272 (8%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+ ++A+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVKQVAQMAGGTLSNEAFGEEQIHGVTTDTRKVS--KGALFIPLIGEHFNGHTFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N G + + L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQTEANPPFGVPVILVEDTLTALQQLAKSYLKEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQTT-YRVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---A 258
L+++A P+ V+ N+G+SH++ LGS E +A AK EI + K D+PL+ A
Sbjct: 175 FLSKLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEPLLRQRA 234
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVA-AQVANG 289
N + R V+ FG CD++++ Q+A G
Sbjct: 235 N-ALARSVKT--FGESEDCDIKVIHIHQLAEG 263
>gi|356668600|gb|AET35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[uncultured bacterium]
Length = 468
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 122/218 (55%), Gaps = 8/218 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H FI P ++ +G V+ + +V VE +T +++ +A
Sbjct: 52 LFIPIKGERVDGHRFI-PTVFEQGAAIVLSEHELTDPAGPYVLVE-----STTDAMKKLA 105
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 106 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 163
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE LG+ + V +AK E F+
Sbjct: 164 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGNRDGVLKAKTECFEHM 223
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADD +A + G +++G DV
Sbjct: 224 MPDAVAVLNADDNKLATVQTVNGKPAIYYGKESASDVH 261
>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 472
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 137/269 (50%), Gaps = 13/269 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +++ ++ GK L P I D+R +AP + FFAI G H+D H+F+
Sbjct: 2 SNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPK--EAFFAIKGDHYDGHDFVLH 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ C+ VI ++ + G + V + L++L +A AR R ++ +TGS
Sbjct: 60 AVQKSACLVVINAEMMASI--GPLSVPVFVVEDVLSALNKLASAAR-LRSQAKIIAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+T K M+ LAL S G + S ++NN +GV L+L + + + E+GMS GEI
Sbjct: 117 VGKTTAKEMLKLALSSAG-KIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + RP I ++ + +HL + +E++A AK EIF+ + +LN DD L
Sbjct: 176 RFLTHLVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFL 235
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQ 285
G+ V+ FG D RL+ +
Sbjct: 236 KEKSHLLGIYNVYTFGESIDADFRLLTLE 264
>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Alicyclobacillus acidocaldarius LAA1]
gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Alicyclobacillus acidocaldarius LAA1]
Length = 455
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 131/247 (53%), Gaps = 10/247 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D R + P F A GQ D H+F+ V V+ V ++V+
Sbjct: 30 VAIDHRQVQPG--HAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALGP-CIRVQ- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L ++ +A + R+ +F G +VG+TGS GK+TTK M+A L ++G V+ S N
Sbjct: 86 ----NALQAVQALARWERD-QFEGPVVGITGSNGKTTTKEMVAAVLSAIGPCVYTS-ANQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D + VLEMGM G G+I EL +ARP I V+ ++G +H+E LGS
Sbjct: 140 NNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQ 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A AK E+ + VLN DDP + + R +++G GCD+R + +
Sbjct: 200 ENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRTTARILWYGMSEGCDIRATSVAWSQ 259
Query: 289 GGLGVQV 295
G+ +V
Sbjct: 260 EGMSFEV 266
>gi|350270645|ref|YP_004881953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillibacter valericigenes Sjm18-20]
gi|348595487|dbj|BAK99447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillibacter valericigenes Sjm18-20]
Length = 460
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 152/285 (53%), Gaps = 25/285 (8%)
Query: 28 TINEIAESVNGKILKWGP----PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ EI +V G + W P P + +CTD+R L F G++FD H+FI
Sbjct: 5 TVREIEAAVGG--VWWNPRKDAPAVSAVCTDSRDLV--SGCLFVPWKGENFDGHDFIDKA 60
Query: 82 LYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L G G + ++ + D+ +++V+ +T +L +A R+ RF + +TG
Sbjct: 61 LE-SGAAGTLCARLPGDLRPDRFYIKVD-----DTRLALKALASAYRD-RFDIPFIQITG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK MIA L S G+ + ++ N+NN +G L++ + AV+E GM+ GE
Sbjct: 114 SVGKTTTKEMIAAVL-SAGLKILKTPENFNNDIGTPLTMFRLMPEHQAAVIETGMNHFGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + RP+I V+ N+GD+H+E LGS E + +AK EIF K G VLN DD L+
Sbjct: 173 IHYLGELVRPDIAVISNIGDAHIEFLGSREGILKAKSEIFDFLKPGGTAVLNGDDALLDT 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREM 303
L +P + G C +R+ V++ GL G+ + E+++
Sbjct: 233 LELPFTTLRC--GQSEHCGIRVT--DVSDRGLDGITCRVTTEKDV 273
>gi|403379025|ref|ZP_10921082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. JC66]
Length = 460
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 134/259 (51%), Gaps = 24/259 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI--------ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ +I GK++ PG+ + TD+R A F + G F+ H F++
Sbjct: 5 TLEQIEVMAEGKLV----PGVPRDKLISGVSTDSR--AITTGCLFVPLIGDVFNGHSFVT 58
Query: 80 PELYGKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
E + KG + Q D + VE N L +L +A RN + + ++ +
Sbjct: 59 -EAFAKGAAASLWQQDQGEPPADMPVIIVE-----NCLTALQKLATAYRN-QLTARVIAI 111
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK M A A+ S V ++ GN NN +G+ L+L+ +D + ++AVLEMGMSG+
Sbjct: 112 TGSNGKTTTKDMTA-AILSTTYKVHKTEGNLNNHIGLPLTLLQMDESTEMAVLEMGMSGR 170
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L +A+PE ++ N+GD+HL LGS E++ARAK EI K N DDPL+
Sbjct: 171 GEIELLTGLAQPEAAIITNIGDAHLLQLGSREEIARAKCEILSGLKEDGFFAYNGDDPLI 230
Query: 258 ANLTVPRGVRKVFFGWRRG 276
N F +R G
Sbjct: 231 DNTYPSMPQPNHFLRYRFG 249
>gi|425438296|ref|ZP_18818701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9432]
gi|389676601|emb|CCH94437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9432]
Length = 454
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
I TD+R + Q F A+ G +F+ H+FI + ++ V N K V
Sbjct: 33 INTDSRSI--ESGQAFLALKGDNFNGHDFIDMAIERGAAALIVDQPVSVNSSKNIPVFLV 90
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
Q NTL + + + RN +F+ ++ +TGSVGK+TTK +IA L + G V ++
Sbjct: 91 Q-------NTLETYQQLGHWWRN-QFTIPVIAITGSVGKTTTKELIASVLATRG-KVHKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ +D D AV+EMGM G+GEI LA++A+P I V+ NVG +H+
Sbjct: 142 LANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGR 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS +A AK E+ ES G + VLN D PL+
Sbjct: 202 LGSESAIAEAKCELLSESPSGSIAVLNYDHPLL 234
>gi|335049557|ref|ZP_08542547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 199-6]
gi|333762817|gb|EGL40302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 199-6]
Length = 458
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 148/273 (54%), Gaps = 18/273 (6%)
Query: 27 WTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ E+ ++ ++L G + TDTR L K F A+ G+ FD H+F+ +
Sbjct: 4 FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSL--QKGGLFVALKGERFDGHDFVL-Q 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV V ++ F + V +TL + +A + R RF+ ++ VTG
Sbjct: 61 AVAKGAAGV----VVAAREETFAALPVPVFAVPDTLRAYQALARFHRR-RFALPVIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++T+ MIA L S + V+Q+ N+NN +G+ +L+G+ + V+EMGM G G+
Sbjct: 116 SVGKTSTRQMIASVL-SQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P I VV NVG SH+E LGS E++A+AKGE+ VLN DD VA
Sbjct: 175 IAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAA 234
Query: 260 LT-VPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
+ + RG + + +G G VR Q + GL
Sbjct: 235 MAKLCRG-KVIGYGTSVGAAVRAGEIQTDDKGL 266
>gi|425439787|ref|ZP_18820102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9717]
gi|389719910|emb|CCH96324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9717]
Length = 454
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 134/241 (55%), Gaps = 23/241 (9%)
Query: 28 TINEIAESV----NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++N++A+ + NG I + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDNGDI-SFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDM 62
Query: 81 ELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ ++ V N+ VQ NTL + +A + RN +F+ ++
Sbjct: 63 AIEKGAATLIVDQPVSVNYSSNIPVFLVQ-------NTLETYQQLAHWWRN-QFTIPVIA 114
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM G
Sbjct: 115 ITGSVGKTTTKELIASVLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRG 173
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
+GEI LA++A+P I V+ NVG +H+ LGS +A +K E+ ES + VLN D PL
Sbjct: 174 RGEIALLAQIAQPTIAVITNVGTAHIGRLGSESAIAESKCELLAESPSSSIAVLNYDHPL 233
Query: 257 V 257
+
Sbjct: 234 L 234
>gi|425452579|ref|ZP_18832396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 7941]
gi|389765564|emb|CCI08573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 7941]
Length = 454
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 21/240 (8%)
Query: 28 TINEIAE--SVNGKI-LKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++N++A+ S+ K + + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ ++ V N K VQ NTL + + + RN +F+ ++ +
Sbjct: 64 IERGAAALIVDQPVSVNSSKNIPVFLVQ-------NTLETYQQLGHWWRN-QFTIPVIAI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM G+
Sbjct: 116 TGSVGKTTTKELIASLLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGR 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA++A+P I V+ NVG +H+ LGS +A AK E+ ES G + VLN D PL+
Sbjct: 175 GEIALLAQIAQPTIAVITNVGTAHIGRLGSESAIAEAKCELLSESPSGSIAVLNYDHPLL 234
>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
27560]
gi|149736242|gb|EDM52128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium ventriosum ATCC 27560]
Length = 452
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 147/273 (53%), Gaps = 19/273 (6%)
Query: 27 WTINEIAESVNG-----KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ IA++ NG + LK + D+R++ + G D H+FI P+
Sbjct: 4 MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLI--EDGYLYLPFVGARVDGHDFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
++ KG + + + NN +++VE + +L ++A + R + S ++G+TGSV
Sbjct: 61 VFDKGALCTLSEKDLNNPKGPYIKVE-----SVATALKDIAEFYR-KQLSCKIIGITGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK +IA LE V ++ GN+NN +G L+++ I ++AV+EMG+S E+
Sbjct: 115 GKTSTKEIIASVLEE-KFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMH 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+++RP++ V+ N+G HLE+LG + V +AK E+F + VLN DD ++N+
Sbjct: 174 RLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVK 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
G VFFG DV + + LG+Q
Sbjct: 234 EVNGHAPVFFGIDTDRDVMAIKYE----SLGIQ 262
>gi|428310539|ref|YP_007121516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcoleus sp. PCC 7113]
gi|428252151|gb|AFZ18110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcoleus sp. PCC 7113]
Length = 453
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 8/211 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L P F A+ G++FD H+F + KG + VI + G Q++
Sbjct: 33 ITTDTRNLQPG--HLFLALRGENFDGHDFARVAIE-KGAIAVITERRQEAQLNGVPQLQV 89
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + R+ +F+ ++GVTGSVGK+TTK +IA L + G NV ++ N+
Sbjct: 90 E---NTLQAYQQIARWWRD-QFNIPVIGVTGSVGKTTTKELIAAVLSTQG-NVLKTQANY 144
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G G+I EL ++A P I ++ NVG +H+ LGS
Sbjct: 145 NNEIGVPKTLLELGSEHDYAVIEMAMRGSGQIAELTQIAHPTIGLITNVGTAHIGLLGSE 204
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
E +A+AK E+ E V +LN D+ + N
Sbjct: 205 EAIAKAKCELLAEMPDTSVAILNHDNQRLMN 235
>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
27755]
gi|166027828|gb|EDR46585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dorea
formicigenerans ATCC 27755]
Length = 465
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 133/232 (57%), Gaps = 10/232 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G+ +AH+FI P+ KG + VI ++ D ++ VE G +L+
Sbjct: 50 KDYLFIAIDGERVNAHKFI-PDTIKKGAMCVISHEDLGETDFPYILVESTGQ-----ALL 103
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+ A R+S F +VG+TGSVGK++TK MIA L S V ++ GN+NN G+ +++
Sbjct: 104 DTAKLYRDS-FDIKVVGITGSVGKTSTKEMIASVL-SQKYCVHKTLGNFNNEWGLPITIF 161
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
++ +AVLEMG++ GE+ L+ +A P+I V+ N+G +HLE + E + + K ++
Sbjct: 162 EMNEKHQVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMI 221
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
Q+ K G +LN DD L+ ++ +GV FFG + C + A V + GL
Sbjct: 222 QDMKTGGSILLNGDDDLLRDMGPVKGVDPEFFGLGKNC--QFYATDVESLGL 271
>gi|347542609|ref|YP_004857246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985645|dbj|BAK81320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 455
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 19/286 (6%)
Query: 26 IWTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I I EI + V+G +L G I DTR + N F AI+G++FD +++I +
Sbjct: 2 ILNIEEIVKCVSGNLLIKGTYCEFNKISIDTRTI--NGEDIFLAISGENFDGNKYIFDAI 59
Query: 83 YG--KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
K C+ + +D V V+ TL++L +A Y R S+ L+ V
Sbjct: 60 KEGVKLCIIDKDYFSYKEFELYDVSVVLVDS-----TLDALKKLAIYVR-SKLDIDLIAV 113
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +I L S V++++GN+NN +G+ +SLI ID +I V E+GM+
Sbjct: 114 TGSVGKTTTKDLIYDFLSS-NYKVYKNFGNFNNHLGMPISLINIDDDAEIGVFEVGMNNL 172
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 173 GEIDYLVNILRPHIGVITNIGVSHIEFLKTKENILKAKMEIVNYFNHNDILIVNYEDDLL 232
Query: 258 ANLTVPRG-VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
++ + +V F + CD+ V V+ G+ V+ E E
Sbjct: 233 KSINSSDFLINRVGFS-KDCCDMYAVNEDVSLNGIKFDVLYNGEEE 277
>gi|357053195|ref|ZP_09114295.1| hypothetical protein HMPREF9467_01267 [Clostridium clostridioforme
2_1_49FAA]
gi|355385962|gb|EHG33006.1| hypothetical protein HMPREF9467_01267 [Clostridium clostridioforme
2_1_49FAA]
Length = 478
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 145/273 (53%), Gaps = 26/273 (9%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ E+ G +L + G I D+R + + F I G+ DAH F+ +
Sbjct: 5 TVKELLEATGGNLLLGQEDQHAGHISLDSRKM--EGDDLFVPIVGERVDAHLFLCQAI-A 61
Query: 85 KGCVGVIGNQVCNNWD--KGFVQVEGNGN---------------VNTLNSLVNMACYARN 127
G V ++ + W+ K V+ + GN +T +L ++ + R
Sbjct: 62 SGAAAVFTSE-HHRWEDVKASVRQQCGGNREQEKKALGAAWIEVPDTKKALQDLGSFCRK 120
Query: 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDI 187
R + LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++VGV +++ I ++ +I
Sbjct: 121 -RLTLPLVGITGSVGKTTTREMIAEAL-SAGFLVYKTPGNSNSQVGVPITIAEIPQSAEI 178
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247
V+E+GMS GE+ ++R+AR + V+ N+G +H+E LGS E + K I +
Sbjct: 179 GVIELGMSEPGEMERISRVARVDCAVITNIGVAHIEQLGSQEHILEEKLHIQDGMPAEGI 238
Query: 248 CVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
LN DDPL+A++ G ++V +G R CD R
Sbjct: 239 LFLNGDDPLLASVVPKEGRKRVLYGLGRDCDYR 271
>gi|421860350|ref|ZP_16292481.1| UDP-N-acetylmuramyl pentapeptide synthase [Paenibacillus popilliae
ATCC 14706]
gi|410830098|dbj|GAC42918.1| UDP-N-acetylmuramyl pentapeptide synthase [Paenibacillus popilliae
ATCC 14706]
Length = 474
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 132/241 (54%), Gaps = 22/241 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTD+R + P F + G+ FD H ++ L G G + W
Sbjct: 30 VCTDSRSVLPGG--LFVPLAGERFDGHAYVEASLRA-GAAGAL-------WQVDRTLPGA 79
Query: 109 NGNV----NTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+G + +T +L +A Y + +V VTGS GK+TTK ++A L S V +
Sbjct: 80 SGPLILVDDTYAALQRLAAAYLAEGQVE--VVAVTGSNGKTTTKDLVASVL-SQRYRVHK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ + +IAVLEMGMSG+GEI L+++ARP++ VV N+GD+HL
Sbjct: 137 TEGNFNNHIGLPLTVLSMPPETEIAVLEMGMSGRGEIELLSKLARPDVAVVTNIGDAHLL 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG----VRKVFFGWRRGCDV 279
LGS E++ARAK EI ++G + V + D+PLV R +R + FG CD+
Sbjct: 197 QLGSREEIARAKLEITAGLRVGGLFVCHGDEPLVDLALTEREPGERIRLLRFGLGERCDL 256
Query: 280 R 280
R
Sbjct: 257 R 257
>gi|452974253|gb|EME74074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sonorensis L12]
Length = 456
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 138/258 (53%), Gaps = 12/258 (4%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA+ G +L +G + + TD+R L K Q F + G+ F+ H F + + +
Sbjct: 5 TVKEIADMAEGTLLDQSFGERLVKGVSTDSRKL--EKEQLFIPLAGERFNGHAF-AEQAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G V+ N+ N +G + + +TL +L +A R+ +VGVTGS GK
Sbjct: 62 QAGVSAVLWNRNEPNPPEGRAVIIVD---DTLKALQRLAKAYRDE-LQVKVVGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI L
Sbjct: 118 TTTKDMIHAVLNT-EYKVHKTEGNYNNHIGLPLTILAMPEDAEIAVLEMGMSAKGEIDFL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
R+ARP+I V+ N+G+SHL LGS E +A AK EI + D+PL++ +
Sbjct: 177 TRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSQEGTLIYVGDEPLLSEKIIH 236
Query: 264 RGVRKVFFGWRRGCDVRL 281
+ FG D +L
Sbjct: 237 PPYQTKTFGEDPAFDYQL 254
>gi|428217923|ref|YP_007102388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudanabaena sp. PCC 7367]
gi|427989705|gb|AFY69960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudanabaena sp. PCC 7367]
Length = 465
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 138/256 (53%), Gaps = 31/256 (12%)
Query: 17 TFRCPSNSPIWTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQH 71
TF C TI + AE++N +++ P I TD+R + P Q F A+ G++
Sbjct: 2 TFSC-------TIAQAAEAMNAVVVESKPTNGQVIQGISTDSRQIKPG--QLFVALQGEN 52
Query: 72 FDAHEFISPELYGKGCVGVIGNQ----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN 127
FD H F+ + +G V V+ N V + + Q+ + L C A
Sbjct: 53 FDGHRFVGSAI-AQGAVAVVVNHPIEMVVDQQGQPIAQLVVTDTLRAYQDLAQWWCAA-- 109
Query: 128 SRFSGV-LVGVTGSVGKSTTKSMIALALESL----GVNVFQSYGNWNNRVGVALSLIGID 182
+GV +V +TGS GK+TTK +IA AL L G V ++Y N+NN +GVA +L+ ID
Sbjct: 110 ---TGVPIVAITGSAGKTTTKELIA-ALLGLYVRPGKQVHKNYANYNNDIGVAHTLLAID 165
Query: 183 RAV-DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE 241
+ D AV+EM M G GEI L++MA P++ V+ N+G +H+ LGS + +A+AK E+ E
Sbjct: 166 PELHDFAVVEMAMRGLGEIARLSQMASPKVGVITNIGTAHIGRLGSKQAIAQAKCELLAE 225
Query: 242 SKLGDVCVLNADDPLV 257
+ VLNA+D L+
Sbjct: 226 MPTDGIAVLNAEDQLL 241
>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. JDR-2]
gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. JDR-2]
Length = 459
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 22/240 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD--KGFVQV 106
+ TDTR + P Q F + G++FD H ++ + W+ + Q
Sbjct: 17 VSTDTRSIQPG--QLFVPLVGENFDGHSYV--------AQALQQGAAAALWETKRELPQE 66
Query: 107 EGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ + +TL +L +A R + V +G+TGS GK+TTK M+A L + V
Sbjct: 67 LADAPLLFVRDTLKALQQLATSYREELYVRV-IGITGSNGKTTTKDMVAAVLGT-AYKVH 124
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN NN +G+ L+++ +D D AVLEMGMSG GEI L +ARP++ V+ N+GD+HL
Sbjct: 125 KTAGNLNNHIGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIGDAHL 184
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCD 278
LGS E +A+AK EI G + + N D+PL +A +++P G + FG D
Sbjct: 185 LQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQLQTFGLGESND 244
>gi|387817733|ref|YP_005678078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Clostridium botulinum H04402 065]
gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Clostridium botulinum H04402 065]
Length = 462
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 149/263 (56%), Gaps = 27/263 (10%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI ++ A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMSEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRL 281
N + F ++ G D +
Sbjct: 234 NFESDK-----FKVYKIGTDKKF 251
>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC61]
gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC52]
gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC61]
gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC52]
Length = 458
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 146/271 (53%), Gaps = 18/271 (6%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAVAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGLKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
L++PR V V FG D ++ GG
Sbjct: 237 LSLPRHV--VTFGAGEQNDYYPTDVRIEAGG 265
>gi|430757090|ref|YP_007210800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
gi|430021610|gb|AGA22216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
Length = 457
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE VNG + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVNGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSEPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-KYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 448
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 148/273 (54%), Gaps = 13/273 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG+ L+ ++ + I + N K+ F + G FD H+FI L
Sbjct: 3 LW-LSEIAKAINGE-LRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + ++ +V+VE +TL +L ++ACY R +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFDDLKVPYVKVE-----DTLLALQSLACYVRRKLNHLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
RKV G + R Q G +V
Sbjct: 233 ELKRKVVTIGIENESNFRAQNVQRHQNGFSFEV 265
>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
maxima CS-328]
gi|423067015|ref|ZP_17055805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate/D-alanyl-
D-alanyl ligase [Arthrospira platensis C1]
gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
maxima CS-328]
gi|406711301|gb|EKD06502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate/D-alanyl-
D-alanyl ligase [Arthrospira platensis C1]
Length = 468
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 139/239 (58%), Gaps = 18/239 (7%)
Query: 24 SPIWTINEIAE--SVNGKI---LKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
S ++T+ ++ + +VNG++ + P I I TDTR L + + F A+ G FD H+F
Sbjct: 2 SELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTL--QRGEVFVALQGDRFDGHDF 59
Query: 78 ISPELYGKGCVGVIGNQ--VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
+ + KG + + N+ ++ + + V +TL + +A R+ RFS ++
Sbjct: 60 VVAAI-AKGALCAVVNREFAVSHPEFPLIPV-----ADTLRAYQTLARSWRD-RFSIPII 112
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GVTGSVGK+TTK +I+ L G V +++GN+NN +GV +L+ + D AV+EM M
Sbjct: 113 GVTGSVGKTTTKELISAVLSHHG-KVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMR 171
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G GEI +L R+ARP + V++NVG +H+ LGS + +ARAK E+ E + VLN D+
Sbjct: 172 GPGEIADLTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDN 230
>gi|390440145|ref|ZP_10228496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis sp. T1-4]
gi|389836429|emb|CCI32622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis sp. T1-4]
Length = 456
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
I TD+R + Q F A+ G +F+ H+FI + ++ V N K V
Sbjct: 33 INTDSRSI--KSGQAFLALKGDNFNGHDFIDMAIEKGAATLIVDQPVSVNSSKNIPVFLV 90
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
Q NTL + +A + RN +F+ ++ +TGSVGK+TTK +IA L S G V ++
Sbjct: 91 Q-------NTLETYQQLAHWWRN-QFTIPVIAITGSVGKTTTKELIASLLASRG-KVHKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ +D D AV+EMGM G GEI LA++A+P I V+ NVG +H+
Sbjct: 142 LANYNNEIGVPKTLLELDETHDSAVIEMGMRGPGEIALLAQIAQPTIAVITNVGTAHIGR 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS +A AK E+ ES + VLN D PL+
Sbjct: 202 LGSEAAIAEAKCELLAESPSSSIAVLNHDHPLL 234
>gi|402833336|ref|ZP_10881955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
gi|402280647|gb|EJU29348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
Length = 966
Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats.
Identities = 97/259 (37%), Positives = 143/259 (55%), Gaps = 16/259 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G+ FD +F + + KG GV+ D ++
Sbjct: 526 IVTDTRKIA--AGSLFVALRGERFDGADF-AAQAVEKGAAGVLVAS-----DTPEAKLPK 577
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A R +FS +V +TGS GK+TTK + A L + + V ++
Sbjct: 578 TGVVLKAKDTLLAYQQIAAAWRR-KFSIPVVAITGSNGKTTTKDLTAAVLGAR-LLVQKT 635
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +G+ L+L+G+ A + AV+E+GM G G+I LA +A P + +V NVG+ H+E
Sbjct: 636 AANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMEL 695
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDP--LVANLTVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++ARAK E+ + + G +LNADD LV GVR V FG R DVR V
Sbjct: 696 LGSIENIARAKAELVEAVEPGGTVILNADDARVLVMREKAKAGVRVVTFGLSRSADVRAV 755
Query: 283 AAQVANGGLGVQVVLEKER 301
A A GG+ + + ER
Sbjct: 756 AVGKAEGGMRFMLEWKNER 774
Score = 37.4 bits (85), Expect = 7.6, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 60/265 (22%)
Query: 28 TINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+A V G +K I D+R + + F AI G H D H FI+ +
Sbjct: 3 TLAELAALVEGAEIKGDAAAKIADIVHDSREVT--EGTLFVAIEGLHVDGHSFIAQAVEK 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACY-----ARNSRFSGVLV 135
C + ++G EG V N +L + + +R R ++
Sbjct: 61 GACAILT--------ERGIEIPEGAAAVLRVPNLAAALEVIVPFFHDYPSRKMR----II 108
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID------RAVDIAV 189
G+TG+ GK+TT M L G V +G L+ + D+ V
Sbjct: 109 GITGTNGKTTTSYMTRAILREAGYKV--------GLIGTIQILVEDEVLPIHNTTPDVVV 160
Query: 190 LEMG---MSGKGE---ILELARMARPEIRVV---------LNVGDSHLESLGSLEDVARA 234
LE M+ +G ++E++ A + RV N+ HL+ +LE+ RA
Sbjct: 161 LERTLAYMARRGMDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRA 220
Query: 235 KGEIF-----QESKLGDVCVLNADD 254
K +F + +K G ++N DD
Sbjct: 221 KARLFDLVSRKGAKAGKTAIVNIDD 245
>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaplasma marginale str.
St. Maries]
gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
marginale str. St. Maries]
Length = 463
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 19/264 (7%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W + +V G L W G I DTR L P F AI G++FD H F+ PE +
Sbjct: 1 MWCAKSMGAAVRGLCLGKDWTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAF 57
Query: 84 GKGCVGVIGNQVC-NNWDKG-FVQVEGNGNVNTLNSLVNMACY-ARNSRFSGVLVGVTGS 140
KG V + ++V D G V V+ +TL +L ++A R++R ++ +TGS
Sbjct: 58 SKGAVAAVVDEVSVPTADCGPLVAVK-----DTLRALHDIATMRLRDTR--AKVIAITGS 110
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK +++ AL G V+ + N+NN +G+ L + + VLEMGM+ GE+
Sbjct: 111 AGKTTTKYVLSGALSKYG-KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEV 169
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+R+ARP++ V+ NVG +HLE S+E V AK E+F K G + VLN D A +
Sbjct: 170 DALSRIARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKM 229
Query: 261 TV---PRGVRKVFFGWRRGCDVRL 281
R + FG G DV++
Sbjct: 230 RAVAESYCARIISFGVGVGADVQI 253
>gi|425463472|ref|ZP_18842810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9809]
gi|389832466|emb|CCI23887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9809]
Length = 450
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 137/243 (56%), Gaps = 27/243 (11%)
Query: 28 TINEIAESV----NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++N++A+ + NG I + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDNGDI-SFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDM 62
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVL 134
+ KG +I +Q V V + N+ NTL + +A + RN +F+ +
Sbjct: 63 AIE-KGAATLIVDQP--------VSVNSSSNIPVFLVHNTLETYQQLAHWWRN-QFTIPV 112
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D + AV+EMGM
Sbjct: 113 IAITGSVGKTTTKELIASVLATQG-KVHKTLANYNNEIGVPKTLLELDETHNSAVIEMGM 171
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G+GEI LA++ RP I V+ NVG +H+ LGS +A AK E+ ES + VLN D
Sbjct: 172 RGRGEIALLAQITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAESPSSSIAVLNYDH 231
Query: 255 PLV 257
PL+
Sbjct: 232 PLL 234
>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|407956154|dbj|BAM49394.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis BEST7613]
gi|407963425|dbj|BAM56664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis BEST7003]
Length = 457
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 16/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L ++Q F + G+HF+ H F+ P+ + G V+ WD+
Sbjct: 30 VATDTRKL--EQHQLFIPLKGEHFNGHTFV-PQAFEAGVAAVL-------WDRSEPNPPE 79
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N V +TL++L +A A ++GVTGS GK+TTK MI L + V ++
Sbjct: 80 NQAVILVDDTLSALQQLAK-AYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTR-YRVHKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ + +IAVLEMGMS KGEI L+R+A P+ V+ N+G+SH++
Sbjct: 138 GGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK EI K V + D+PL+
Sbjct: 198 LGSREGIAEAKLEIINGLKEDGVLIYIGDEPLL 230
>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa NIES-843]
gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
6-diaminopimelate--D-alanyl-D-alanine ligase
[Microcystis aeruginosa NIES-843]
Length = 450
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 137/243 (56%), Gaps = 27/243 (11%)
Query: 28 TINEIAESV----NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++N++A+ + NG I + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDNGDI-SFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDM 62
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVL 134
+ KG +I +Q V V + N+ NTL + +A + RN +F+ +
Sbjct: 63 AIE-KGAATLIVDQP--------VSVNSSSNIPVFLVHNTLETYQQLAHWWRN-QFTIPV 112
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D + AV+EMGM
Sbjct: 113 IAITGSVGKTTTKELIASVLATQG-KVHKTLANYNNEIGVPKTLLELDETHNSAVIEMGM 171
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G+GEI LA++ RP I V+ NVG +H+ LGS +A AK E+ ES + VLN D
Sbjct: 172 RGRGEIALLAQITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAESPSSSIAVLNYDH 231
Query: 255 PLV 257
PL+
Sbjct: 232 PLL 234
>gi|427412446|ref|ZP_18902638.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Veillonella ratti ACS-216-V-Col6b]
gi|425716253|gb|EKU79237.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Veillonella ratti ACS-216-V-Col6b]
Length = 458
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 24/238 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG-------VIGNQVCNNWDK 101
+ TDTR + + F A+TG FD H+F+ P+ G +G I N +C
Sbjct: 30 VSTDTRTI--EEGSLFVALTGDTFDGHDFL-PQAQANGALGALVKPGHTIKNLIC----- 81
Query: 102 GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
V+VE + L + +A Y R RF +V VTGS GK+TTK MIA L + NV
Sbjct: 82 --VEVE-----SPLLAYQQLANYHRR-RFDIPVVAVTGSSGKTTTKEMIAAVL-GIKFNV 132
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
++ N+NN +G+ +L+ + + ++EMGM G G+I ELAR+A P + V+ NVG+SH
Sbjct: 133 LKTEKNFNNEIGLPKTLLQLTADHEACIVEMGMRGLGQIDELARIAEPMVGVITNVGNSH 192
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
+E LGS E++A+AK E+ Q +LN DD V + + +++G + +
Sbjct: 193 IELLGSRENIAKAKSELIQHIPATGTAILNEDDEFVRQMGNLTDGKIIYYGIKEKATI 250
>gi|352094130|ref|ZP_08955301.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Synechococcus sp. WH 8016]
gi|351680470|gb|EHA63602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Synechococcus sp. WH 8016]
Length = 456
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 121/230 (52%), Gaps = 23/230 (10%)
Query: 43 WGPP--------------GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
WGPP G ICTD+R+L P +F + G+ FD H F++
Sbjct: 11 WGPPQRGDGAAPNLQQRLGPICTDSRLLTPGD--FFVPLRGERFDGHRFLASATEQ---- 64
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
G+ V + + Q + +V+ TL + +AC R + S +V VTGS GK+TT+
Sbjct: 65 GIQAAVVARDSEIPVPQSLLHWSVDDTLEAYQQIACLVRRN-LSCAVVAVTGSAGKTTTR 123
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+I AL LG V S GN NN VGV L+L+GI+ V+EMGM G GEI L+R A
Sbjct: 124 ELIRAALAPLGA-VQASIGNNNNDVGVPLTLLGIEEHHAAVVVEMGMRGPGEIERLSRCA 182
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
PEI V+ N+G +H+ LGS E +A AK EI + ++ A DPL+
Sbjct: 183 EPEIAVITNIGTAHIGRLGSREAIASAKCEITAALATDGLVIIPAGDPLL 232
>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus watsonii C-113]
gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus watsonii C-113]
Length = 454
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 115/207 (55%), Gaps = 11/207 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR LAP F + G FD H FI+ + KG + Q N+ Q+E
Sbjct: 30 VSTDTRSLAPGA--LFVVLRGLRFDGHAFIT-QAREKGASAALLEQRINDP---LPQIEV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L AC+ R RF+ +V VTGS GK+T K MIA L + + + GN
Sbjct: 84 ADARIALGQLA--ACWRR--RFARPIVAVTGSNGKTTVKEMIASILGWV-EPILATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + AV+EMG + GEI L+R+ RP++ ++ N G +HL+ G L
Sbjct: 139 NNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDL 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDP 255
+ VARAKGEIFQ V +LNADDP
Sbjct: 199 KGVARAKGEIFQGMGSEGVAILNADDP 225
>gi|383458063|ref|YP_005372052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Corallococcus coralloides DSM 2259]
gi|380733532|gb|AFE09534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Corallococcus coralloides DSM 2259]
Length = 466
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 124/248 (50%), Gaps = 9/248 (3%)
Query: 37 NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS-PELYGKGCVGVIGNQV 95
G+ ++ G P + CTDTR L P F A+ G+ FDAH+F+ + G V +
Sbjct: 19 RGEPVEAGFPAV-CTDTRSLTPGC--LFVALQGERFDAHDFVDGAQRQGAAGAVVKRGRA 75
Query: 96 CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155
GF E V + + RF + V GS GK+TTK M+ L
Sbjct: 76 LPALPPGFALYE----VEDTLAALGGLGALHRRRFQIPVAAVGGSNGKTTTKEMVGAILA 131
Query: 156 SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215
+ G ++ GN+NN VGV L+L ++ + AV+E+GM+ GEI L R +P+ V+
Sbjct: 132 TRG-PALKTEGNFNNEVGVPLTLFRLEPSHVAAVIEVGMNQPGEIERLTRKVQPDAGVIT 190
Query: 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
V HLE LGSLE VA A+GE+F+E V+N DD L+ G + + FG
Sbjct: 191 VVQPEHLEGLGSLEGVAEAEGEMFRELLPQATAVVNLDDALIVRQAARSGAKHLTFGRAE 250
Query: 276 GCDVRLVA 283
G DVRL A
Sbjct: 251 GADVRLTA 258
>gi|376003290|ref|ZP_09781103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Arthrospira sp. PCC 8005]
gi|375328320|emb|CCE16856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Arthrospira sp. PCC 8005]
Length = 468
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 139/239 (58%), Gaps = 18/239 (7%)
Query: 24 SPIWTINEIAE--SVNGKI---LKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
S ++T+ ++ + +VNG++ + P I I TDTR L + + F A+ G FD H+F
Sbjct: 2 SELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTL--QRGEVFVALQGDRFDGHDF 59
Query: 78 ISPELYGKGCVGVIGNQ--VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
+ + KG + + N+ ++ + + V +TL + +A R+ RFS ++
Sbjct: 60 VVAAI-AKGALCAVVNREFAVSHPEFPLIPV-----ADTLRAYQTLARSWRD-RFSIPII 112
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GVTGSVGK+TTK +I+ L G V +++GN+NN +GV +L+ + D AV+EM M
Sbjct: 113 GVTGSVGKTTTKELISAVLSHHG-KVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMR 171
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G GEI +L R+ARP + V++NVG +H+ LGS + +ARAK E+ E + VLN D+
Sbjct: 172 GPGEIADLTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDN 230
>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
[Anaplasma marginale str. Florida]
gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
[Anaplasma marginale str. Florida]
Length = 476
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 19/264 (7%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W + +V G L W G I DTR L P F AI G++FD H F+ PE +
Sbjct: 14 MWCAKSMGAAVRGLCLGKDWTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAF 70
Query: 84 GKGCVGVIGNQV-CNNWDKG-FVQVEGNGNVNTLNSLVNMACY-ARNSRFSGVLVGVTGS 140
KG V + ++V D G V V+ +TL +L ++A R++R ++ +TGS
Sbjct: 71 SKGAVAAVVDEVSVPTADCGPLVAVK-----DTLRALHDIATMRLRDTR--AKVIAITGS 123
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK +++ AL G V+ + N+NN +G+ L + + VLEMGM+ GE+
Sbjct: 124 AGKTTTKYVLSGALSKYG-KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEV 182
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+R+ARP++ V+ NVG +HLE S+E V AK E+F K G + VLN D A +
Sbjct: 183 DALSRIARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKM 242
Query: 261 TV---PRGVRKVFFGWRRGCDVRL 281
R + FG G DV++
Sbjct: 243 RAVAESYCARIISFGVGVGADVQI 266
>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus oremlandii OhILAs]
gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus oremlandii OhILAs]
Length = 464
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 128/238 (53%), Gaps = 19/238 (7%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I IA + NG I+K G G + TDTR + K F + G+ FD H FI E
Sbjct: 6 IQAIARACNGTIIKKGSVDTIGSVSTDTRTI--QKGSLFVPLIGEKFDGHTFIE-EAIKN 62
Query: 86 GCVGVIGNQVCNNW------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
G V + N D ++V+ +TL +L ++ Y R F +GVTG
Sbjct: 63 GAQAVFVQEGHNTKTIQAFNDVWLIEVK-----DTLKALQAISVYYR-KLFPIPFIGVTG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++TK +I+ L S NV ++ GN+NN +G+ L+L ++ I+VLEMGMS GE
Sbjct: 117 SVGKTSTKDLISGVL-SGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGE 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
I +L M PEI V+ N+G SH+E LGS E + +AK EI K G+ ++N DD +
Sbjct: 176 IRDLVDMVHPEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDDEYL 233
>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase
[Eubacterium eligens ATCC 27750]
gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase
[Eubacterium eligens ATCC 27750]
Length = 469
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 10/224 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R +A + F AI G+ D H+FI + + KG VI + + + ++QVE
Sbjct: 31 ITIDSRKVA--EGGLFIAIKGERSDGHDFIG-QCFEKGAACVISEKELPDEEHSYIQVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L +L ++A RN+ +VG+TGSVGK++TK I+ L S V ++ GN+
Sbjct: 87 ----SSLQALKDLALLYRNN-LDVKVVGITGSVGKTSTKETISSVL-SEKYRVLKTLGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+S GE+ L+++A+P+I V+ N+G HLE+LG+
Sbjct: 141 NNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRLSKIAQPDICVITNIGLCHLENLGTR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+ + +AK EIF + +LN DD ++ ++ G R + FG
Sbjct: 201 DGILKAKTEIFNHMNPDGIVILNGDDDKLSTISQVHGKRPLVFG 244
>gi|354582289|ref|ZP_09001191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus lactis 154]
gi|353199688|gb|EHB65150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus lactis 154]
Length = 461
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F I G+ FD H+F + + W + V
Sbjct: 19 VATDSRTIQPG--NLFVPIVGEKFDGHQFGA--------AVLAAGAGALLWQRDHEPVP- 67
Query: 109 NGNV----NTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+G V +TL++L +A Y SR +VG+TGS GK+T K M+ LE+ V +
Sbjct: 68 DGPVILVDDTLSALQKLAAAYLAESRAK--VVGITGSNGKTTVKDMVTALLETR-YKVHK 124
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ + DIAVLEMGMSG+ EI L+ +ARP+I V+ N+G++HL
Sbjct: 125 TQGNYNNHIGLPLTVLAMKEDTDIAVLEMGMSGRHEIELLSSIARPDIAVITNIGEAHLL 184
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-----TV-PRGVRKVFFGWRRGC 277
LGS E++ARAK EI K G + V + D+PL+ + TV P + FG R
Sbjct: 185 QLGSREEIARAKLEIVSGMKPGGLLVYHGDEPLIDQVLQEPGTVKPASMNTFTFGSRDTN 244
Query: 278 D 278
D
Sbjct: 245 D 245
>gi|346308126|ref|ZP_08850252.1| hypothetical protein HMPREF9457_01961 [Dorea formicigenerans
4_6_53AFAA]
gi|345903923|gb|EGX73674.1| hypothetical protein HMPREF9457_01961 [Dorea formicigenerans
4_6_53AFAA]
Length = 455
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 127/218 (58%), Gaps = 8/218 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G+ +AH+FI P+ KG + VI ++ D ++ VE G +L+
Sbjct: 40 KDYLFIAIDGERVNAHKFI-PDTIKKGAMCVISHEDLGETDFPYILVESTGQ-----ALL 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+ A R+S F +VG+TGSVGK++TK MIA L S V ++ GN+NN G+ +++
Sbjct: 94 DTAKLYRDS-FDIKVVGITGSVGKTSTKEMIASVL-SQKYCVHKTLGNFNNEWGLPITIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
++ +AVLEMG++ GE+ L+ +A P+I V+ N+G +HLE + E + + K ++
Sbjct: 152 EMNEKHQVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMI 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
Q+ K G +LN DD L+ ++ +GV FFG + C
Sbjct: 212 QDMKTGGSILLNGDDDLLRDMGPVKGVDPEFFGLGKNC 249
>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister micraerophilus DSM 19965]
gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister micraerophilus DSM 19965]
Length = 460
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 17/254 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ NEI ++ + +++ G+ + D+R + +N F A+ G+ FD H+F+
Sbjct: 4 FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTI--KENDLFIALKGERFDGHDFVINACK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+I + C ++ + V +T + ++A + R RF +V VTG
Sbjct: 62 KGASAVIISDSEC------LEKISEDCTVFLVKDTKKAFEDLAHFNR-MRFDIPVVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI++ L S NV + N NN +G++L+L+ I + D V+EMGM G G+
Sbjct: 115 SNGKTTTKDMISVLLSS-KFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL +A+P I V+ NVG SH+ LGS E++A+AKGE+ Q + VLN DD V
Sbjct: 174 IEELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKK 233
Query: 260 LTVPRGVRKVFFGW 273
+ R +++G
Sbjct: 234 MGENFKGRVIYYGL 247
>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 455
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 130/247 (52%), Gaps = 10/247 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D R + P F A GQ D H+F+ V V+ V ++V+
Sbjct: 30 VAIDHRQVQPG--HAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALGP-CIRVQ- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L ++ +A + R +F G +VG+TGS GK+TTK M+A L +LG V+ S N
Sbjct: 86 ----NALQAVQALARWERG-QFEGPVVGITGSNGKTTTKEMVAAVLGALGPCVYTS-ANQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D + VLEMGM G G+I EL +ARP I V+ ++G +H+E LGS
Sbjct: 140 NNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQ 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A AK E+ + VLN DDP + + R +++G GCD+R + +
Sbjct: 200 ENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRTSARILWYGMGEGCDIRATSVTWSQ 259
Query: 289 GGLGVQV 295
G+ +V
Sbjct: 260 EGMSFEV 266
>gi|375309401|ref|ZP_09774682.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Aloe-11]
gi|375078710|gb|EHS56937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Aloe-11]
Length = 457
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 130/245 (53%), Gaps = 32/245 (13%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F ++G+ FD H ++ + G + W K
Sbjct: 19 VFTDSR--KPQSQGLFVPLSGERFDGHNYVQQIMSEAGAAAFL-------WQKDHGAPPA 69
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L +A Y R + S +VG+TGS GK+TTK ++ AL
Sbjct: 70 GNAIEVE-----DTLEALQQLAAAYLRETGVS--IVGITGSNGKTTTKDIVT-ALLGTTF 121
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI +LEMGMSG+GEI L +A+P++ V+ N+G+
Sbjct: 122 KVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIGLLTNIAKPDVAVITNIGE 181
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL+ + P G++ FG
Sbjct: 182 SHLLQLGSRAEIARAKLEIASGLKPGGLLIYNGDEPLLPQVLAEPATVKPEGLKWFTFGI 241
Query: 274 RRGCD 278
+ D
Sbjct: 242 SKNND 246
>gi|443313886|ref|ZP_21043496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 7509]
gi|442776299|gb|ELR86582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 7509]
Length = 446
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 10/206 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + P F A+ G++FD HEF+S E G + I + D +QV
Sbjct: 32 ITTDTRNIKPG--DVFVALRGENFDGHEFVS-EAKAYGAIAAIVMSDFESTDLPLLQV-- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A + R +FS ++G+TGSVGK+TTK +IA LE G V ++ N+
Sbjct: 87 ---TDTLQAYQQLAQWWRK-QFSIPVIGITGSVGKTTTKELIAAVLEPFG-KVLKTQANY 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + AV+EM M GEI L ++A P I V+ NVG +H+ LGS
Sbjct: 142 NNEIGVPKTLLELGSDHKFAVIEMAMRAAGEIALLTQIASPTIGVITNVGTAHIGRLGSK 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ +ARAK E+ E V +LNAD+
Sbjct: 202 DAIARAKCELLAEMPKNSVAILNADN 227
>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
ATCC 19707]
gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Nitrosococcus oceani AFC27]
gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrosococcus oceani ATCC 19707]
gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Nitrosococcus oceani AFC27]
Length = 454
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 11/207 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ FD H FI+ + KG + Q N+ Q+E
Sbjct: 30 VSTDTRSLVPGS--LFVALRGERFDGHAFIA-QAREKGASAALLEQAINDP---LPQIEV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L AC+ RF +V VTGS GK+T K MIA L V + GN
Sbjct: 84 ADARIALGQLA--ACW--RQRFVRPIVAVTGSNGKTTVKEMIASVL-GWREPVLATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + AV+EMG + GEI L+R+ RP++ ++ N G +HL+ G L
Sbjct: 139 NNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDL 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDP 255
+ VARAKGEIFQ V +LNADDP
Sbjct: 199 KGVARAKGEIFQGMGSEGVAILNADDP 225
>gi|373458537|ref|ZP_09550304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Caldithrix abyssi DSM
13497]
gi|371720201|gb|EHO41972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Caldithrix abyssi DSM
13497]
Length = 450
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 12/233 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISP-ELYGKGCVGVIGNQVCNNWDKGFVQVE 107
I TD+R + PN F+ + G+ +DAH+F+ L G C V Q + F QV
Sbjct: 33 INTDSRKIGPN--DVFWVLIGERYDAHDFVPAVALSGALCAVV---QRAVEMPRPFPQVV 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L A R RF+G ++G+TGS GK++TK +IA L+ V ++ GN
Sbjct: 88 VP---DTLKALQQFAHLNR-QRFNGTVIGLTGSNGKTSTKELIAHLLQG-KQTVHKTSGN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +G L+L+ ++ + D AV+EMG + GEI LAR+ +P+ ++ N+G +HLE +
Sbjct: 143 LNNHIGCPLTLLELNNSFDFAVIEMGTNHPGEIELLARITQPDAALITNLGTAHLEFFKT 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
++ +AR K +F + G +NADDP +A VR + +G + DVR
Sbjct: 203 MDAIAREKLSLFDQMAPGKTIFVNADDPHIAGYQRTDLVR-ITYGLKEKADVR 254
>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Ba4 str. 657]
gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Ba4 str. 657]
Length = 462
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 145/260 (55%), Gaps = 21/260 (8%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ +
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAIEKG 63
Query: 86 GCVGVIG----NQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ ++ ++V ++VE NT +L+++A Y R S+ +V +TGS
Sbjct: 64 AALCIVSEINFSEVKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAITGST 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+ EI
Sbjct: 118 GKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIH 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++N
Sbjct: 177 NMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFE 236
Query: 262 VPRGVRKVFFGWRRGCDVRL 281
+ F ++ G D +
Sbjct: 237 SDK-----FKVYKIGTDKKF 251
>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Paenibacillus polymyxa E681]
gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Paenibacillus polymyxa E681]
Length = 467
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 32/245 (13%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F + G+ FD H ++ + + W K
Sbjct: 29 VFTDSR--RPQSQGLFVPLVGERFDGHNYVQQIVSEASAAAFL-------WQKNHGAPPS 79
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L ++A Y R + S +VG+TGS GK+TTK ++ AL
Sbjct: 80 ENAIEVE-----DTLEALQHLAAAYLRETGVS--VVGITGSNGKTTTKDIVN-ALLGTTF 131
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI +LEMGMSG+GEI LA +A+P++ ++ N+G+
Sbjct: 132 KVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQPDVAIITNIGE 191
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL++ + P G++ FG
Sbjct: 192 SHLLQLGSRAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVKPEGLKLFTFGL 251
Query: 274 RRGCD 278
G D
Sbjct: 252 ATGND 256
>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 468
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 14/284 (4%)
Query: 28 TINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +EI + + + G G I TDTR + F A+ G+HFD F + E
Sbjct: 6 TWDEICTATGASVRRGGVAGDTVLPITTDTRKVV--AGDLFVALRGEHFDGTAF-AAEAL 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
+G V+ +Q + G + +TL + ++A +A +F +V +TGS
Sbjct: 63 ERGAAAVLVDQKTPATALTALDTARGGVLVAEDTLRAYQDIA-HAWRMKFDIPVVAITGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK + A L G V ++ N+NN VG+ L+L+GI AV+E+GM G G+I
Sbjct: 122 NGKTTTKDLTAAVLSGRG-KVCRTAANYNNEVGLPLTLLGITPEDTAAVVEIGMRGMGQI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA + P I +V NV + H+E LGS+E++A+AK E+ G +LNADDP VA +
Sbjct: 181 AALAPITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAAM 240
Query: 261 --TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+ GVR + +G DVR A Q G V + ER
Sbjct: 241 RSSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERH 284
>gi|424827302|ref|ZP_18252111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sporogenes PA 3679]
gi|365980225|gb|EHN16261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sporogenes PA 3679]
Length = 462
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ ++F+ +
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNKFVQTAIENG 63
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ ++ N+DK ++VE NT +L+++A Y + S+ +V +T
Sbjct: 64 AALCIVSEI---NFDKEKIGKSSYVIKVE-----NTNKALLDLAKYYK-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK E+ ++ ++N D L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDNILIINGDSDLLS 233
Query: 259 NLTVPR 264
N +
Sbjct: 234 NFESDK 239
>gi|334127471|ref|ZP_08501383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Centipeda periodontii DSM 2778]
gi|333389425|gb|EGK60590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Centipeda periodontii DSM 2778]
Length = 468
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 141/260 (54%), Gaps = 12/260 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G++FD +F + L+ KG V+ N + + ++ E
Sbjct: 30 ITTDTRKIAAG--DLFIALRGENFDGADFAADALH-KGAAAVLVNAPLSASVQKDLKKE- 85
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A +A +F +V +TGS GK+TTK + A L G V ++
Sbjct: 86 KGTVLTVPDTLKAYQEIA-HAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGA-VCRT 143
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P I +V NV + H+E
Sbjct: 144 AANYNNEVGLPLTLLGITEDDTAAVVEIGMRGLGQIAALAPVAAPNIGIVTNVCEVHMEL 203
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++A+AK E+ + G +LNADD VA + GVR + +G D+R
Sbjct: 204 LGSIENIAKAKAELVEAIPAGGTVLLNADDERVAAMRPMAADGVRILTYGIGADADIRAE 263
Query: 283 AAQVANGGLGVQVVLEKERE 302
A ++A GG V ER
Sbjct: 264 ALRLAAGGSQFMVTWGNERH 283
>gi|427406109|ref|ZP_18896314.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Selenomonas sp. F0473]
gi|425708950|gb|EKU71989.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Selenomonas sp. F0473]
Length = 469
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 139/268 (51%), Gaps = 21/268 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
T NEI + G+ L G + TDTR + + F A+ G+ FD +F +
Sbjct: 3 FMTWNEIRAATGGRPLYGKLKGSAAFAGVATDTRRV--KAGELFVALRGEKFDGADFAAD 60
Query: 81 ELY-GKGCVGVI-----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL 134
L G G V V ++ KG V G +TL + +A +AR +F +
Sbjct: 61 ALRAGAGAVMVAEPLSPAHRNMLEAAKGIVI----GVDDTLTAYQQIA-HARRMKFDIPV 115
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
V VTGS GK+TTK + A L G V ++ N+NN +G+ L+L+GI AV+EMGM
Sbjct: 116 VAVTGSNGKTTTKDLAAAVLSGRGA-VCRTAANYNNEIGLPLTLLGITEKDTAAVVEMGM 174
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G G+I LA +A P + +V NVG++H+E LGS+E++ARAK E+ + G +LNADD
Sbjct: 175 RGLGQIASLAAVAAPTVGIVTNVGETHMELLGSIENIARAKAELVEAIPSGGTVILNADD 234
Query: 255 PLVANLTVPR--GVRKVFFGWRRGCDVR 280
VA + VR + + R D+R
Sbjct: 235 ARVAAMRAQARDDVRVLTYSIRAAADIR 262
>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 468
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 12/257 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EI + GK+L P ++ TD+R + F + G+ DAH F+
Sbjct: 5 MTVREIVAACGGKLLCGDPDTMVTSVVTDSRKV--TDGSLFVPLKGEKADAHTFLHAAFA 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ ++ ++ V+ +T +L ++A R RFS +VG+TGS GK
Sbjct: 63 SGAAAALTQEHTRMEAEEAWIAVD-----STQLALQHIAAAYRQ-RFSIPVVGITGSAGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M ALAL S G V ++ GN N+++G+ L + R + AV+EMG+S GE+ L
Sbjct: 117 TTTKEMTALAL-SAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A++A P+ V+ N+G +H+ L + E++ R K I G V LN DDP++A L
Sbjct: 176 AQVAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGK 235
Query: 264 RGVRKVFFGWRRGCDVR 280
G VF+G CD R
Sbjct: 236 TGYEAVFYGTAPWCDFR 252
>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Bf]
gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Bf]
Length = 462
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 145/260 (55%), Gaps = 21/260 (8%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ +
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAIEKG 63
Query: 86 GCVGVIG----NQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ ++ ++V ++VE NT +L+++A Y R S+ +V +TGS
Sbjct: 64 AALCIVSEINFSEVKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAITGST 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+ EI
Sbjct: 118 GKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIH 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++N
Sbjct: 177 NMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFE 236
Query: 262 VPRGVRKVFFGWRRGCDVRL 281
+ F ++ G D +
Sbjct: 237 SDK-----FKVYKIGTDKKF 251
>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. m3-13]
Length = 453
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 148/280 (52%), Gaps = 22/280 (7%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I E G+ + I+ DTR + + I G++F+ H F+ +
Sbjct: 5 TLKQIQEMAQGQPISSEYSAIVVEGVSKDTR--EDMSGKLYIPIIGENFNGHAFVRDAIE 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
KG V + W K + + N+ +T+ +L ++A RN + +VG+TG
Sbjct: 63 KKGAV-------ASFWQKDQPEPPTDLNLIVVDDTIEALQHLASSYRN-QIGMKVVGITG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+ LE+ V ++ GN+NN +G+ L+++ + ++AVLEMGMSG+GE
Sbjct: 115 SNGKTTTKDMVTSVLETT-FRVHKTAGNYNNHIGLPLTILSMKEDTEVAVLEMGMSGRGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ +A+P+ V+ N+G+SH++ LGS E +A AK EI K ++N D+PL+ +
Sbjct: 174 IELLSSIAKPDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGKLIINGDEPLLTD 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299
V + FG + D + A + G+G ++E+
Sbjct: 234 -RVGGKTNVIPFGLKANNDYQ--AKDIMLKGIGTHFIIEE 270
>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. CC9311]
gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. CC9311]
Length = 458
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 119/230 (51%), Gaps = 23/230 (10%)
Query: 43 WGPP--------------GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
WGPP G +CTD+R+L +F + G+ FD H F++
Sbjct: 13 WGPPQQADGAVPNLQQRLGPVCTDSRLL--TAGAFFVPLRGERFDGHRFLASATEQ---- 66
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
G+ V + D Q + V+ TL + MAC R + S V V +TGS GK+TT+
Sbjct: 67 GIQAAVVARDSDIPVPQSLLHWIVDDTLEAYQQMACLVRRNLNSAV-VAITGSAGKTTTR 125
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+I AL LG V S GN NN VGV L+L+G+D V+EMGM G GEI L+R A
Sbjct: 126 ELIRAALAPLGA-VQASIGNNNNDVGVPLTLLGVDEQHAAVVVEMGMRGPGEIERLSRCA 184
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
PEI V+ N+G +H+ LGS E +A AK EI + V+ A DPL+
Sbjct: 185 EPEIAVITNIGTAHIGRLGSREAIAAAKCEITAALSPDGLVVIPAGDPLL 234
>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus albus 8]
gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus albus 8]
Length = 454
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 147/279 (52%), Gaps = 21/279 (7%)
Query: 29 INEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++EI ++V G +G P I TDTR + + F A+ G +FD H+F + +
Sbjct: 6 LSEIIQAVRGS---YGYPADVEVKDISTDTRTI--TEGSLFIALKGANFDGHDFAAQAME 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G V V+ + + V +T +L++ A Y R SRF LVG+TGSVGK
Sbjct: 61 A-GAVAVVTERPVDGARCLIVD-------STSQALLDAASYYR-SRFDIPLVGITGSVGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI ++ S G ++ N NN VG+ +L+ +D AV+EMGM+ KGEI +
Sbjct: 112 TTTKEMI-WSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRM 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ +P + V+ N+G SH+E+LGS E + +AK EI + +L+ DD +++ + V
Sbjct: 171 STSCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDDRILSKVQV- 229
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
G RK+++ D + A+ +A G+ + RE
Sbjct: 230 YGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYARE 268
>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum NCTC 2916]
gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum NCTC 2916]
Length = 462
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 148/263 (56%), Gaps = 27/263 (10%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R + +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVSKSSYVIKVE-----NTNKALLDLAKYYR-GKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRL 281
N + F ++ G D +
Sbjct: 234 NFESDK-----FKVYKIGTDKKF 251
>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Geodermatophilus obscurus DSM 43160]
gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
obscurus DSM 43160]
Length = 464
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 129/260 (49%), Gaps = 18/260 (6%)
Query: 27 WTINEIAESVNGKILKWGP---PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ E+AE+V G++ PG + D+R +AP F A+ G+ D H+F++
Sbjct: 4 MSLAEVAEAVGGRLTPDAAGTVPGKVTVDSRAVAPG--DLFVAVPGERVDGHDFLT---- 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG---VLVGVTGS 140
+ D V + V L L A ++R +G V +G+TGS
Sbjct: 58 -AAAAAGAVAALTTRPDGALPCVVVDEPVAALGRL----AAAVHTRLAGGDLVTIGITGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + G V G++NN +G+ L+++ D VLEMG G+G I
Sbjct: 113 SGKTSTKDLLGQVLATAGATV-SPPGSYNNDIGLPLTVLDADEDTRFLVLEMGSRGRGHI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+ARP++ VVLNVG +HL GS + +A AKGE+ + VLNADDP V +
Sbjct: 172 ARLCRVARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEALPAEGTAVLNADDPRVIGM 231
Query: 261 TVPRGVRKVFFGWRRGCDVR 280
R V G G DVR
Sbjct: 232 APRTRARVVTTGRSAGADVR 251
>gi|417964866|ref|ZP_12606514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-4]
gi|380339724|gb|EIA28414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-4]
Length = 339
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 28/287 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG- 84
I EI + V G +L G I DTR + N F AI G++FD +++I +
Sbjct: 5 IEEIVKCVFGDLLIKGTYREFNKISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKG 62
Query: 85 -KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
K C+ ++ + +D + V+ NTL +L N+A Y R S+ L+ VTGS
Sbjct: 63 VKLCIIDRNYFVDKEFDPYDVSIILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +I L S V++S+GN NN +G+ +SL+ ID +I V E+GM+ GEI
Sbjct: 117 VGKTTTKDLIYDFLSS-NYKVYKSFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV--- 257
L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 176 DHLVSILRPHIGVITNIGVSHIEFLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTV 235
Query: 258 --ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
++ V R G+ CD+ +++ + V+ + E
Sbjct: 236 QSSDFIVSR------IGFSEECDMYASNEEISLNKIKFDVLYNGKNE 276
>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii L2-6]
Length = 457
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 121/229 (52%), Gaps = 13/229 (5%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P G++ TD+R + P F A G+ FD H+F + L +G V+ N
Sbjct: 23 PIGLVTTDSREVCPG--CIFVAFPGERFDGHDFAAKALE-EGAAYVVLNHPVEG------ 73
Query: 105 QVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
V V + +S M N R F +VGVTGSVGK+TTK M A+ G N
Sbjct: 74 -VPAERAVISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAIAGFG-NTI 131
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN NN +G+ ++ I R + AV+EMGMS GEI LA+ ARP++ ++ +G SH+
Sbjct: 132 KTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDVGIITCIGVSHI 191
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
+LGS E++ +AK EI G VLN DDP + +P VR V+F
Sbjct: 192 GNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAALPTHVRPVWF 240
>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanicaulis sp. HTCC2633]
gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanicaulis sp. HTCC2633]
Length = 467
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 20/284 (7%)
Query: 23 NSPIWTINEIAESVNGKILK--WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+P+WT + AE+ G++ + W G+ DTR L P F A+T Q D H+F
Sbjct: 2 TAPLWTARDAAEASQGRLTEGGWAASGV-SIDTRTLQPG--DLFVALTAQR-DGHDFAQA 57
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
L ++ N + + V+ N L+ L+ + AR R V VGVTGS
Sbjct: 58 ALDKGAAAVLVSNPEACSGPRLVVE-------NVLDGLIRLGEGARR-RSDAVRVGVTGS 109
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++ K +A G S ++NN GV L+L + A AV EMGM+ KGEI
Sbjct: 110 VGKTSVKEALAAVFIKAG-PAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEI 168
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
EL RM RP + ++ + +HLE+LGS+E +A AK EIF+ + V V+ ADD L
Sbjct: 169 SELTRMVRPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRL 228
Query: 261 -TVPRGVRKVF---FGWRRGCDVRLVA-AQVANGGLGVQVVLEK 299
+G F FG G VR+++ + +GG+G V+ K
Sbjct: 229 MQAVQGSGAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGK 272
>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Solibacter usitatus Ellin6076]
gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Solibacter usitatus Ellin6076]
Length = 442
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV-NTLNSLVNMA 122
+FA+ G + D H+FI+ + + V+ ++ + V G V +TL +L N+
Sbjct: 39 YFALRGPNHDGHDFIAAAVEKRASALVV--------ERAY-GVPGELVVPDTLRALQNLG 89
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+AR + + G ++GVTGS GK+TTK IA L S + V ++ GN+NN VGV LSL+ +
Sbjct: 90 AWARRN-WGGTVIGVTGSAGKTTTKDAIAHLLASE-MPVGKTVGNFNNHVGVPLSLLRLP 147
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
V+EMGM+ GEI EL +ARPEI VV NVG +H+E S+E +A AK E+ +
Sbjct: 148 DGCRAGVIEMGMNHSGEIRELGAIARPEIGVVTNVGYAHVEFFDSIEGIALAKRELIEGL 207
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADDP VA + R + FG ++R
Sbjct: 208 TPDGVAVLNADDPRVAGFSAVHPGRSITFGLSEHAEIR 245
>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum D str. 1873]
gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum D str. 1873]
Length = 455
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 149/256 (58%), Gaps = 23/256 (8%)
Query: 31 EIAESVNGKIL------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
EI E+++GKI K+ + TDTR + N++ F A+ G +F+A+++I E
Sbjct: 8 EIVEAIHGKIHINSNCHKYNS---VSTDTRKI--NEDSIFIALKGDNFNANDYI-VEASK 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG I +++ N + ++ N +V NT +L+++A R S+ + ++G+TGS
Sbjct: 62 KGANLCIVDEIKFNEN----DLQKNTSVILVKNTRKALLDLAELYR-SKLNIKVIGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK + A AL S VF++ GN+NN +G+ L + +D DIAVLEMGMS EI
Sbjct: 117 TGKTSTKDLTAAALSS-KFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++ARP+I ++ N+G SH+E+L + E++ +AK EI + ++N ++ L+ ++
Sbjct: 176 HRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDI 235
Query: 261 TVPRGVRKVFFGWRRG 276
+ + + G+ G
Sbjct: 236 S-SDDYKVISIGFNEG 250
>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. BT1B_CT2]
gi|423680896|ref|ZP_17655735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis WX-02]
gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. BT1B_CT2]
gi|383442002|gb|EID49711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis WX-02]
Length = 456
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 139/261 (53%), Gaps = 18/261 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIAE G + G + TD+R LA K Q F + G+ F+ H F + + +
Sbjct: 5 TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLA--KGQLFIPLAGERFNGHVF-AEQAF 61
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G V+ N+ N +G + V+ +TL +L +A RN + +VGVTGS
Sbjct: 62 QEGVAAVLWNRSEPNPPEGKPVILVD-----DTLEALQKLAKAYRN-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L + V ++ GN+NN +G+ L+++ + ++A+LEMGMS KGEI
Sbjct: 116 GKTTTKDMIHAVLGT-EYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-L 260
L R+ARP+I V+ N+G+SHL LGS E +A AK EI + D+PL+ L
Sbjct: 175 FLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEPLLTERL 234
Query: 261 TVPRGVRKVFFGWRRGCDVRL 281
P K FG D +L
Sbjct: 235 NQPPYDTKT-FGEDPAFDYQL 254
>gi|416350640|ref|ZP_11680942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum C str. Stockholm]
gi|338196205|gb|EGO88413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum C str. Stockholm]
Length = 455
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 149/256 (58%), Gaps = 23/256 (8%)
Query: 31 EIAESVNGKIL------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
EI E+++GKI K+ + TDTR + N++ F A+ G +F+A+++I E
Sbjct: 8 EIVEAIHGKIHINSNCHKYNS---VSTDTRKI--NEDSIFIALKGDNFNANDYI-VEASK 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG I +++ N + ++ N +V NT +L+++A R S+ + ++G+TGS
Sbjct: 62 KGANLCIVDEIKFNEN----DLQKNTSVILVKNTRKALLDLAELYR-SKLNIKVIGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK + A AL S VF++ GN+NN +G+ L + +D DIAVLEMGMS EI
Sbjct: 117 TGKTSTKDLTAAALSS-KFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++ARP+I ++ N+G SH+E+L + E++ +AK EI + ++N ++ L+ ++
Sbjct: 176 HRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDI 235
Query: 261 TVPRGVRKVFFGWRRG 276
+ + + G+ G
Sbjct: 236 S-SDDYKVISIGFNEG 250
>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. SMY]
gi|402774702|ref|YP_006628646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis QB928]
gi|418034443|ref|ZP_12672915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|351468696|gb|EHA28905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|402479887|gb|AFQ56396.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop
imelate-D-alanyl-D-alanine [Bacillus subtilis QB928]
Length = 481
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 29 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 85
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 86 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 138 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 197 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 256
>gi|404487865|ref|YP_006711971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,
6-diaminopimeloyl-D-alanyl-D-alanine synthase MurF
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346866|gb|AAU39500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,
6-diaminopimeloyl-D-alanyl-D-alanine synthase MurF
[Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 491
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 142/272 (52%), Gaps = 22/272 (8%)
Query: 10 LACTSKTTFRCPSNSPIW----TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKN 61
L C S +F C + T+ EIAE G + G + TD+R LA K
Sbjct: 19 LICGS-VSFPCRRKRGTYMITRTVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLA--KG 75
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLV 119
Q F + G+ F+ H F + + + +G V+ N+ N +G + V+ +TL +L
Sbjct: 76 QLFIPLAGERFNGHVF-AEQAFQEGVAAVLWNRSEPNPPEGKPVILVD-----DTLEALQ 129
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A RN + +VGVTGS GK+TTK MI L + V ++ GN+NN +G+ L+++
Sbjct: 130 KLAKAYRN-QLDVKVVGVTGSNGKTTTKDMIHAVLGT-EYKVHKTEGNYNNHIGLPLTIL 187
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ ++A+LEMGMS KGEI L R+ARP+I V+ N+G+SHL LGS E +A AK EI
Sbjct: 188 AMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIV 247
Query: 240 QESKLGDVCVLNADDPLVAN-LTVPRGVRKVF 270
+ D+PL+ L P K F
Sbjct: 248 NGLSKEGTLIYVGDEPLLTERLNQPPYDTKTF 279
>gi|357058721|ref|ZP_09119568.1| hypothetical protein HMPREF9334_01285 [Selenomonas infelix ATCC
43532]
gi|355373512|gb|EHG20830.1| hypothetical protein HMPREF9334_01285 [Selenomonas infelix ATCC
43532]
Length = 468
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 136/258 (52%), Gaps = 8/258 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G++FD EF + L ++G + + +K +G
Sbjct: 30 ITTDTRKI--ETGDLFIALRGENFDGAEFAADALQKGASAVLVGVPLSKSVEKALKNAKG 87
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
NTL + +A +A +F +V +TGS GK+TTK + A L + G V ++
Sbjct: 88 AVLTVSNTLAAYQAIA-HAWRMKFGVPVVAITGSNGKTTTKDLTAAVLSARG-TVCRTAA 145
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+G+ AV+E+GM G G+I LA +A P I +V NV + H+E LG
Sbjct: 146 NYNNEVGLPLTLLGMTSGDVAAVVEIGMRGLGQIAALAPVAAPSIGIVTNVCEVHMELLG 205
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ Q G +LNADD VA + GVR + +G DVR A
Sbjct: 206 SIENIAKAKAELVQAIPAGGTVILNADDARVAAMRSLAADGVRVLTYGIGADADVRAEAL 265
Query: 285 QVANGGLGVQVVLEKERE 302
++ + G V ER
Sbjct: 266 RLTSDGSQFMVTWNNERH 283
>gi|428277909|ref|YP_005559644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. natto BEST195]
gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. natto BEST195]
Length = 481
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 29 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 85
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 86 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 138 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 197 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 256
>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14673]
gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14673]
Length = 455
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 149/285 (52%), Gaps = 25/285 (8%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I +I E+VNG++L I D+R + + F + G+ DAH F+S + +
Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTM--KGDDLFVPLIGEKADAHRFLS-QAFEN 62
Query: 86 GCVGVIGNQ--VCNNWDKG-FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + ++ C G ++VE +T +L ++ Y R SR S LVG+TGSVG
Sbjct: 63 GAAASLTSEHDTCPEGITGALIRVE-----DTKKALQDIGRYIR-SRLSLPLVGITGSVG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ MIA AL S G F++ N N++VGV +++ I A +I VLE+GMS GE+
Sbjct: 117 KTTTREMIAAAL-SAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEV 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
+A +AR + V+ N+G +H+E+LGS E++ + K I K G LN D+ L+ ++
Sbjct: 176 IADIARVDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRA 235
Query: 263 PRGVRKVFFGWRRGCDVRLV---------AAQVANGGLGVQVVLE 298
G F+G C R V A + +G V VVLE
Sbjct: 236 KDGCETSFYGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLE 280
>gi|344996594|ref|YP_004798937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964813|gb|AEM73960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor lactoaceticus 6A]
Length = 448
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 145/270 (53%), Gaps = 12/270 (4%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELYGKG 86
++EIA ++NG++ + ++ + I + N K+ F + G FD H+FI L G
Sbjct: 5 LSEIATAINGELRNFSGD-VLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQN-G 62
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
+ I + ++ +V+VE +TL +L ++ACY R +VGVTGSVGK++T
Sbjct: 63 AISFISQKDFDDLKVPYVKVE-----DTLLALQSLACYVRRKLNHLKVVGVTGSVGKTST 117
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L+++
Sbjct: 118 KEYIFNVL-SLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQI 176
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A+P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 177 AKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKKELK 235
Query: 267 RKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
RKV G + R Q G +V
Sbjct: 236 RKVVTIGIENESNFRAQNVQRHQNGFSFEV 265
>gi|342732567|ref|YP_004771406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|417960709|ref|ZP_12603251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-2]
gi|417969087|ref|ZP_12610049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-co]
gi|418016027|ref|ZP_12655592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-
D-alanine ligase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372823|ref|ZP_12964915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330022|dbj|BAK56664.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506362|gb|EGX28656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-
D-alanine ligase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|380335284|gb|EIA25517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-2]
gi|380338456|gb|EIA27343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-co]
gi|380342492|gb|EIA30937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 454
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 28/287 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG- 84
I EI + V G +L G I DTR + N F AI G++FD +++I +
Sbjct: 5 IEEIVKCVFGDLLIKGTYREFNKISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKG 62
Query: 85 -KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
K C+ ++ + +D + V+ NTL +L N+A Y R S+ L+ VTGS
Sbjct: 63 VKLCIIDRNYFVDKEFDPYDVSIILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +I L S V++S+GN NN +G+ +SL+ ID +I V E+GM+ GEI
Sbjct: 117 VGKTTTKDLIYDFLSS-NYKVYKSFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV--- 257
L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 176 DHLVSILRPHIGVITNIGVSHIEFLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTV 235
Query: 258 --ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
++ V R G+ CD+ +++ + V+ + E
Sbjct: 236 QSSDFIVSR------IGFSEECDMYASNEEISLNKIKFDVLYNGKNE 276
>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanobacter sp. RED65]
gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanobacter sp. RED65]
Length = 452
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 124/247 (50%), Gaps = 13/247 (5%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P + TDTR L P F A+ G FD HE++ + KG V+ ++ F+
Sbjct: 24 PFQSVSTDTRTLQPG--DLFVALIGDRFDGHEYVQQAIE-KGASAVLISKRME-VTVPFL 79
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
QV +T +L + Y R RF +V +TGS GK+T K M+A L V +
Sbjct: 80 QV-----ADTTEALGRLGLYNR-LRFENPVVAITGSSGKTTVKGMMATLLRQQN-EVLVT 132
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G L+L+ + + D AV+E+G SG GEI A +ARP + ++ N G++HLE
Sbjct: 133 RGNLNNHIGAPLTLLRLSDSDDYAVIELGASGLGEIAYTAELARPTVSILTNAGNAHLEG 192
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVA 283
GS+E + + KGEI V VLNAD P G R+V FG D+R
Sbjct: 193 FGSVEGIVKTKGEIIDALADDGVAVLNADSPYFEEWQKRAGSRRVISFGETLSADIRATD 252
Query: 284 AQV-ANG 289
Q ANG
Sbjct: 253 IQSNANG 259
>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP08]
gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP07]
gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP08]
gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP07]
Length = 457
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 145/283 (51%), Gaps = 16/283 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L N++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGNISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L + + + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
V K+ FG+ + D+ + + L V+ ++E
Sbjct: 235 KEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKE 277
>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
subtilis subsp. subtilis str. 168]
gi|452916533|ref|ZP_21965156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Bacillus subtilis MB73/2]
gi|3024202|sp|P96613.1|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. 168]
gi|452114673|gb|EME05072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Bacillus subtilis MB73/2]
Length = 457
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
>gi|428319316|ref|YP_007117198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria nigro-viridis PCC 7112]
gi|428242996|gb|AFZ08782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria nigro-viridis PCC 7112]
Length = 460
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 123/212 (58%), Gaps = 9/212 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G++FD H+F++ +G I V +W +
Sbjct: 33 IATDTRTL--EGGEVFLALRGENFDGHQFVAK----ARDLGAIAAIVDRHWQEELPNFPL 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + ++A + R+ +FS +V VTGSVGK+T K +IA L + G NV ++ N+
Sbjct: 87 LRVDDTLKAYQSIARWWRD-QFSIPIVAVTGSVGKTTVKELIAAVLSTKG-NVLKTQYNY 144
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + A + AV+EMGM G GEI L++MARP + V+ NVG +H+ LGS
Sbjct: 145 NNEIGVPKTLLELSPAHNYAVIEMGMRGSGEIALLSQMARPTVAVITNVGTAHIGRLGSE 204
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD-DPLVAN 259
E +A+AK E+ E V +LN D D L+A
Sbjct: 205 EAIAQAKCELLAEMPADSVAILNHDCDRLIAT 236
>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|438002201|ref|YP_007271944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|432178995|emb|CCP25968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Tepidanaerobacter acetatoxydans Re1]
Length = 462
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + NK + F +TG +FD H+FI + KG ++ C+ + V
Sbjct: 29 VSTDSRTI--NKGELFVPLTGPNFDGHDFIE-RAFEKGAAAIL----CDKNKRSKVDNLP 81
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N+ N ++L++++ Y R F V +TGSVGK+TTK M A L ++ V ++
Sbjct: 82 IKNIIFVDNPQSALLSLSAYYRR-LFDIPFVAITGSVGKTTTKEMTAEIL-NMRFKVLKT 139
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++ ++ + V+E+GMS GEI +A + RP+I V+ N+G +H+E
Sbjct: 140 SGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMASVVRPKIAVITNIGIAHIEK 199
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG 276
LGS +++ARAK EI + D+ VLN D + + + VFFG RG
Sbjct: 200 LGSKQNIARAKMEILEPLGENDLAVLNGDCQELWDARKTIVPKTVFFGQERG 251
>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis BSn5]
gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis BSn5]
Length = 457
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVEGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
>gi|444914627|ref|ZP_21234769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Cystobacter fuscus DSM 2262]
gi|444714486|gb|ELW55367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Cystobacter fuscus DSM 2262]
Length = 465
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 127/252 (50%), Gaps = 11/252 (4%)
Query: 36 VNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG 92
V G + GP +CTDTR L P F A+ G+ FDAH+F++ V+
Sbjct: 13 VAGATRRGGPAADFQAVCTDTRALTPGC--LFVALQGERFDAHDFLAQAAQAGAAGAVVK 70
Query: 93 N-QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA 151
+ +GFV E + L +L A RF + V GS GK+TTK M+
Sbjct: 71 RGRTLPALPEGFVLYEVEDTLAALGAL----GRAHRERFRIPVGAVGGSNGKTTTKEMVG 126
Query: 152 LALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211
L + G ++ GN NN +GV L+L+ + AV+E+GM+ GE+ L R+ARP+
Sbjct: 127 AILSTRG-PALKTEGNLNNEIGVPLTLLRLLPEHVAAVVELGMNQPGEMTRLTRVARPDA 185
Query: 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
++ V HLE LGSLE VA A+GE+F+E V V+N DD L+ +++ F
Sbjct: 186 ALLTVVQPEHLEGLGSLEGVAEAEGEMFRELPPTAVAVVNLDDALIPAQAARGQAKQLTF 245
Query: 272 GWRRGCDVRLVA 283
G VRLVA
Sbjct: 246 GRHADAQVRLVA 257
>gi|384455962|ref|YP_005668557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|346984305|dbj|BAK79981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
Length = 465
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 28/287 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG- 84
I EI + V G +L G I DTR + N F AI G++FD +++I +
Sbjct: 16 IEEIVKCVFGDLLIKGTYREFNKISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKG 73
Query: 85 -KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
K C+ ++ + +D + V+ NTL +L N+A Y R S+ L+ VTGS
Sbjct: 74 VKLCIIDRNYFVDKEFDPYDVSIILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGS 127
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +I L S V++S+GN NN +G+ +SL+ ID +I V E+GM+ GEI
Sbjct: 128 VGKTTTKDLIYDFLSS-NYKVYKSFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEI 186
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV--- 257
L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 187 DHLVSILRPHIGVITNIGVSHIEFLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTV 246
Query: 258 --ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
++ V R G+ CD+ +++ + V+ + E
Sbjct: 247 QSSDFIVSR------IGFSEECDMYASNEEISLNKIKFDVLYNGKNE 287
>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase
[Eubacterium rectale ATCC 33656]
gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase
[Eubacterium rectale ATCC 33656]
Length = 464
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 121/218 (55%), Gaps = 8/218 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H+FI P ++ +G V+ + +V VE +T +++ +A
Sbjct: 48 LFIPIKGERVDGHKFI-PTVFEQGAAIVLSEHELTDPAGPYVLVE-----STTDAMKKLA 101
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 102 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 159
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE LG + V +AK E F+
Sbjct: 160 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHM 219
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADD +A + G +++G V
Sbjct: 220 MPDAVAVLNADDDKLATVQTVNGKPAIYYGKESASGVH 257
>gi|403069280|ref|ZP_10910612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanobacillus sp. Ndiop]
Length = 454
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 136/244 (55%), Gaps = 17/244 (6%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGC 87
++++ GK+ + TD+R + N F I G +FD H+F + + G G
Sbjct: 8 LSKVFPDFKGKLAPEAEIDEVTTDSRNVG--GNSLFIPIVGDNFDGHDFANQAIEAGAGA 65
Query: 88 V-----GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ I N+V ++ V+ +TL +L +A + RN + +++G+TGS G
Sbjct: 66 MLWDKNKEIPNEVPEDYPLFLVE-------DTLKALQRLAAHYRND-INPIVIGITGSNG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK + A A+ + GN+NN +G+ L+++ + R ++ +LEMGMS GEI
Sbjct: 118 KTTTKDLTA-AVTQTSYRTHYTNGNFNNHIGLPLTILSMKRDTEVLILEMGMSNFGEIEL 176
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L ++ARP+ ++ N+G+SH+E LGS E +A+AK EI + K V +++ D+PL+ NL +
Sbjct: 177 LTKLARPDYAIITNIGESHIEFLGSREGIAKAKLEIVKGLKENGVLIVDGDEPLLQNLQL 236
Query: 263 PRGV 266
+ V
Sbjct: 237 SQRV 240
>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium rectale DSM 17629]
Length = 464
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 121/218 (55%), Gaps = 8/218 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H+FI P ++ +G V+ + +V V +T +++ +A
Sbjct: 48 LFIPIKGERVDGHKFI-PNVFEQGAAIVLSEHELKDPAGPYVLVG-----STTDAMKKLA 101
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 102 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 159
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE LG + V +AK E F+
Sbjct: 160 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHM 219
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADD +A + G +++G DV
Sbjct: 220 MPDAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVH 257
>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium rectale M104/1]
Length = 464
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 120/218 (55%), Gaps = 8/218 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H FI P ++ +G V+ + +V VE +T +++ +A
Sbjct: 48 LFIPIKGERVDGHRFI-PTVFEQGAAIVLSEHELTDPAGPYVLVE-----STTDAMKKLA 101
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 102 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 159
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE L + V +AK E F+
Sbjct: 160 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHM 219
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADD +A + G +++G DV
Sbjct: 220 MPDAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVH 257
>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 456
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 10/231 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + F I G+ DAH+FI P++ G + + +V +N D ++ VE
Sbjct: 31 VITDSR--KAEEGCLFVPIVGERVDAHKFI-PQVMEAGALATLSERVLDNADFPYIAVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L + ++ GN+
Sbjct: 87 ----SSLQAVKDIAEFYL-KQLQIPVVGITGSVGKTSTKEVIASVLNQ-KYHTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + +IAVLEMG+S GE+ LA++ARP+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
V +AK EIF+ + VLN DD + + ++ VFFG C V
Sbjct: 201 NGVLKAKTEIFKFLRPEGHIVLNGDDDKLITVKEYEKIKPVFFGMSNECQV 251
>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
sp. CCY0110]
gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
sp. CCY0110]
Length = 451
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 9/207 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI-GNQVCNNWDKGFVQVE 107
I TDTR + +KN F A+ G+ FD H FI + KG +GVI ++V K Q+
Sbjct: 29 INTDTRFI--DKNDIFIALKGEKFDGHSFIENAI-AKGAIGVIVDHEVSVISSKRITQII 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + +A + RN + + ++G+TGSVGK+TTK +IA L G V ++ N
Sbjct: 86 VK---DTLIAYQEIANWWRN-KLTIPIIGITGSVGKTTTKELIAAVLGVYG-KVHKTQAN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+ + D AV+EM M +GEI L+++ARP I ++ NVG +H+ LGS
Sbjct: 141 YNNEIGVPKTLLSLTTNHDYAVIEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADD 254
E +A AK E+ E + +LN DD
Sbjct: 201 REAIAEAKCELLAEMPKDSIAILNHDD 227
>gi|374621729|ref|ZP_09694259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ectothiorhodospira sp. PHS-1]
gi|373940860|gb|EHQ51405.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ectothiorhodospira sp. PHS-1]
Length = 460
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + Q F A+ G FDAH+FI P+L G + + V D+ V V+
Sbjct: 27 VSTDSRGV--TAGQLFVALKGPRFDAHDFIVPQLPAAGLL--VSRDVGLQDDRPRVLVD- 81
Query: 109 NGNVNTLNSLVNMA------CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+T +L ++A C AR +V +TGS GK+T K M+A L G +
Sbjct: 82 ----DTRRALADLATGWRRCCQAR-------IVALTGSNGKTTVKEMLAAILGHCG-QTW 129
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
+ GN NN +GV L+L+ + + V+EMG + GEI L +ARP++ ++ N G +HL
Sbjct: 130 ATRGNLNNDIGVPLTLLNLSESDRFGVIEMGANHAGEIALLTGIARPDVALITNAGPAHL 189
Query: 223 ESLGSLEDVARAKGEIFQESKLGD--VCVLNADDPLVAN-LTVPRGVRKVFFGWRRGCDV 279
E GS+E VA AKGEIFQ LGD V V+NADDP L++ G R + FG V
Sbjct: 190 EGFGSIEGVAHAKGEIFQ--GLGDEGVAVINADDPYADLWLSMNPGRRVILFGLSARAGV 247
Query: 280 R 280
R
Sbjct: 248 R 248
>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulovorans 743B]
gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulovorans 743B]
Length = 459
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 137/241 (56%), Gaps = 18/241 (7%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ ++ G ++ GP ++ DTR L K + AI G++FD ++F+ E
Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKL--EKGCIYIAIKGENFDGNDFV-VEAIN 61
Query: 85 KGCVGVIGNQVCNNW-----DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG I +++ V VE NT +L+ +A Y RN + ++GVTG
Sbjct: 62 KGAELCIIDKIAYTEAEVLNKSAIVLVE-----NTKKALMQLAKYYRN-KLDIKVIGVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA AL S + VF++ GN+NN +G+ L + +D D+AVLEMGMS E
Sbjct: 116 STGKTSTKDLIAAAL-SEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ +ARP++ V+ N+G SH+E+L + E++ +AK EI ++ ++N DD ++
Sbjct: 175 IQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLST 234
Query: 260 L 260
+
Sbjct: 235 I 235
>gi|440755932|ref|ZP_20935133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Microcystis aeruginosa TAIHU98]
gi|440173154|gb|ELP52612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Microcystis aeruginosa TAIHU98]
Length = 454
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 137/242 (56%), Gaps = 25/242 (10%)
Query: 28 TINEIAE--SVNGKI-LKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++N++A+ S+ K + + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDKTDISFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVLV 135
+ +G +I +Q V V + N+ NTL + + + RN +F+ ++
Sbjct: 64 IK-RGAATLIVDQP--------VSVNSSKNIPVFLVKNTLETYQQLGHWWRN-QFTIPVI 113
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM
Sbjct: 114 AITGSVGKTTTKELIASVLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMR 172
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
G+GEI LA++A+P I V+ NVG +H+ LGS +A AK E+ ES + VLN D P
Sbjct: 173 GRGEIALLAQIAQPTIAVITNVGTAHIGRLGSETAIAEAKCELLAESPSSSIAVLNYDHP 232
Query: 256 LV 257
L+
Sbjct: 233 LL 234
>gi|375007037|ref|YP_004980668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|359285884|gb|AEV17568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 458
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 18/271 (6%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAV 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGMKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL + V ++ GN+NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLATNYRVQKTEGNFNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
L +PR V V FG D ++ GG
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGG 265
>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
Length = 966
Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats.
Identities = 96/259 (37%), Positives = 143/259 (55%), Gaps = 16/259 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G+ FD +F + + KG GV+ D ++
Sbjct: 526 IVTDTRKIA--AGSLFVALQGERFDGADF-AAQAVEKGAAGVLVAV-----DTPEAKLPK 577
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A R +FS +V +TGS GK+TTK + A L + + V ++
Sbjct: 578 TGVVLKAKDTLLAYQQIAAAWRR-KFSIPVVAITGSNGKTTTKDLTAAVLGAC-LLVQKT 635
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +G+ L+L+G+ A + AV+E+GM G G+I LA +A P + +V NVG+ H+E
Sbjct: 636 AANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMEL 695
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++ARAK E+ + + G +LNADD V + GVR V FG R DVR V
Sbjct: 696 LGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKAGVRVVTFGLSRDADVRAV 755
Query: 283 AAQVANGGLGVQVVLEKER 301
A A GG+ + + ER
Sbjct: 756 AVGKAEGGMRFMLEWKNER 774
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 44/257 (17%)
Query: 28 TINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+A V G +K I D+R + + F AI G H D H FI+ +
Sbjct: 3 TLAELAALVEGAEIKGDAAAKIADIVHDSREVT--EGTLFVAIEGLHVDGHSFIAQAVEK 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
C + ++ +G V N+ ++ + SR ++G+TG+ GK+
Sbjct: 61 GACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSR-KMRIIGITGTNGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV-------DIAVLEMG---M 194
TT M L G V +G L+ D A+ D+ VLE M
Sbjct: 118 TTSYMTRAILREAGYKV--------GLIGTIQILVE-DEALPIHNTTPDVVVLERTLAYM 168
Query: 195 SGKGE---ILELARMARPEIRVV---------LNVGDSHLESLGSLEDVARAKGEIF--- 239
+ +G ++E++ A + RV N+ HL+ +LE+ RAK +F
Sbjct: 169 ARRGMDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLV 228
Query: 240 --QESKLGDVCVLNADD 254
+ +K G V+N DD
Sbjct: 229 SRKGAKEGKTAVVNDDD 245
>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
Length = 968
Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats.
Identities = 96/259 (37%), Positives = 143/259 (55%), Gaps = 16/259 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G+ FD +F + + KG GV+ D ++
Sbjct: 528 IVTDTRKIA--AGSLFVALQGERFDGADF-AAQAVEKGAAGVLVAV-----DTPEAKLPK 579
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A R +FS +V +TGS GK+TTK + A L + + V ++
Sbjct: 580 TGVVLKAKDTLLAYQQIAAAWRR-KFSIPVVAITGSNGKTTTKDLTAAVLGAC-LLVQKT 637
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +G+ L+L+G+ A + AV+E+GM G G+I LA +A P + +V NVG+ H+E
Sbjct: 638 AANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMEL 697
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++ARAK E+ + + G +LNADD V + GVR V FG R DVR V
Sbjct: 698 LGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKAGVRVVTFGLSRDADVRAV 757
Query: 283 AAQVANGGLGVQVVLEKER 301
A A GG+ + + ER
Sbjct: 758 AVGKAEGGMRFMLEWKNER 776
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 44/257 (17%)
Query: 28 TINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+A V G +K I D+R + + F AI G H D H FI+ +
Sbjct: 5 TLAELAALVEGAEIKGDAAAKIADIVHDSREVT--EGTLFVAIEGLHVDGHSFIAQAVEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
C + ++ +G V N+ ++ + SR ++G+TG+ GK+
Sbjct: 63 GACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSR-KMRIIGITGTNGKT 119
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV-------DIAVLEMG---M 194
TT M L G V +G L+ D A+ D+ VLE M
Sbjct: 120 TTSYMTRAILREAGYKV--------GLIGTIQILVE-DEALPIHNTTPDVVVLERTLAYM 170
Query: 195 SGKGE---ILELARMARPEIRVV---------LNVGDSHLESLGSLEDVARAKGEIF--- 239
+ +G ++E++ A + RV N+ HL+ +LE+ RAK +F
Sbjct: 171 ARRGMDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLV 230
Query: 240 --QESKLGDVCVLNADD 254
+ +K G V+N DD
Sbjct: 231 SRKGAKEGKTAVVNDDD 247
>gi|449093156|ref|YP_007425647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis XF-1]
gi|449027071|gb|AGE62310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis XF-1]
Length = 471
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 19 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 75
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 76 EAGVAAVL-------WDRSEPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 127
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 128 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 186
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 187 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 246
>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
albus 7]
gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
albus 7]
Length = 454
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 25/281 (8%)
Query: 29 INEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++EI E+V G +G P I TDTR + + F A+ G +FD H+F + +
Sbjct: 6 LSEIIEAVRGS---YGYPANVEVKDISTDTRTI--TEGSLFIALKGANFDGHDFAAKAM- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + V+ + + V +T +L++ A Y R S+F LVG+TGSVGK
Sbjct: 60 ELGAIAVVTERPVDGARCLIVD-------STAQALLDSASYYR-SKFDIPLVGITGSVGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI L S ++ N NN VG+ +L+ +D AV+EMGM+ KGEI +
Sbjct: 112 TTTKEMIYSVL-SRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRM 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ +P I V+ N+G SH+E+LGS E + +AK EI + +L DD L+A +
Sbjct: 171 STSCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDDKLLAKAEIY 230
Query: 264 RGVRKVFFG--WRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
G R+V++ ++ CDV A+ +A G+ + +RE
Sbjct: 231 GG-RQVWYYSVSKKDCDV--YASDIAADSKGISFTIHYKRE 268
>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
kaustophilus HTA426]
gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
kaustophilus HTA426]
Length = 458
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 144/271 (53%), Gaps = 18/271 (6%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAV 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGMKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
L +PR V V FG D ++ GG
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGG 265
>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 8_1_57FAA]
gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438459|ref|ZP_08618093.1| hypothetical protein HMPREF0990_00487 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 8_1_57FAA]
gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336019254|gb|EGN48984.1| hypothetical protein HMPREF0990_00487 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 473
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 129/229 (56%), Gaps = 10/229 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R K+ F AI G D H FI P++ +G + + + + +++V
Sbjct: 31 VVIDSR--KAEKDSLFIAIRGARVDGHSFI-PKVMEQGALCAVSEEDLGDVPYSYIKV-- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L ++A + R S +VG++GSVGK++TK MIA L S +V ++ GN+
Sbjct: 86 ---ASCEQALKDIAEHYRRS-LDIKVVGISGSVGKTSTKEMIASVL-SQKYSVLKTEGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + + +IAVLEMG+SG E+ LA++ARP+I V+ N+G +H+E+LGS
Sbjct: 141 NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
+ + +AK E+F +LN DD + + G+ V+FG C
Sbjct: 201 DGILKAKTEMFAYMNENGTIILNGDDDKLRGYSPENGITPVYFGLDESC 249
>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
gi|145846281|gb|EDK23199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus torques ATCC 27756]
Length = 483
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 129/229 (56%), Gaps = 10/229 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R K+ F AI G D H FI P++ +G + + + + +++V
Sbjct: 41 VVIDSR--KAEKDSLFIAIRGARVDGHSFI-PKVMEQGALCAVSEEDLGDVPYSYIKV-- 95
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L ++A + R S +VG++GSVGK++TK MIA L S +V ++ GN+
Sbjct: 96 ---ASCEQALKDIAEHYRRS-LDIKVVGISGSVGKTSTKEMIASVL-SQKYSVLKTEGNF 150
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + + +IAVLEMG+SG E+ LA++ARP+I V+ N+G +H+E+LGS
Sbjct: 151 NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSR 210
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
+ + +AK E+F +LN DD + + G+ V+FG C
Sbjct: 211 DGILKAKTEMFAYMNENGTIILNGDDDKLRGYSPENGITPVYFGLDESC 259
>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-66c26]
gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-76w55]
gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-97b34]
gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-37x79]
gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile CD196]
gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile R20291]
gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile QCD-32g58]
gi|384361872|ref|YP_006199724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile BI1]
gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile CD196]
gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile R20291]
Length = 457
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 147/283 (51%), Gaps = 16/283 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + + F AI G++ D H F+ P Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
V K+ FG+ + D+ + + L V+ ++E
Sbjct: 235 KEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKE 277
>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum BKT015925]
gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
botulinum BKT015925]
Length = 455
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 147/247 (59%), Gaps = 22/247 (8%)
Query: 25 PIWTINEIAESVNGKIL------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+ EI E+++GKI K+ + TDTR + N+N F A+ G +F+A+ +I
Sbjct: 2 ELLKFEEIVEAIHGKIHINSNCHKYNS---VSTDTRKI--NENSIFVALKGDNFNANNYI 56
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVL 134
E KG I +++ +++G +Q N +V NT +L+++A R S+ + +
Sbjct: 57 -VEASKKGANLCIVDEI--KFNEGDLQ--ENTSVILVENTRKALLDLAELYR-SKLNIKI 110
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+G+TGS GK++TK + A AL S VF++ GN+NN +G+ L + +D +D+AVLEMGM
Sbjct: 111 IGITGSTGKTSTKDLTAAALGS-KFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGM 169
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
S EI LA++ARP+I ++ N+G SH+E+L + E++ +AK EI + ++N ++
Sbjct: 170 SDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNEN 229
Query: 255 PLVANLT 261
L+ +++
Sbjct: 230 DLLKDIS 236
>gi|448236521|ref|YP_007400579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus sp. GHH01]
gi|445205363|gb|AGE20828.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus sp. GHH01]
Length = 458
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 144/271 (53%), Gaps = 18/271 (6%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGSLYVPLRGATFNGHDFVQ-EAV 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGMKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
L +PR V V FG D ++ GG
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGG 265
>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
[Anaplasma marginale str. Mississippi]
Length = 456
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 17/245 (6%)
Query: 43 WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDK 101
W G I DTR L P F AI G++FD H F+ PE + KG V + ++V D
Sbjct: 14 WTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAFSKGAVAAVVDEVSVPTADC 70
Query: 102 G-FVQVEGNGNVNTLNSLVNMACY-ARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
G V V+ +TL +L ++A R++R ++ +TGS GK+TTK +++ AL G
Sbjct: 71 GPLVAVK-----DTLRALHDIATMRLRDTR--AKVIAITGSAGKTTTKYVLSGALSKYG- 122
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V+ + N+NN +G+ L + + VLEMGM+ GE+ L+R+ARP++ V+ NVG
Sbjct: 123 KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITNVGP 182
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV---PRGVRKVFFGWRRG 276
+HLE S+E V AK E+F K G + VLN D A + R + FG G
Sbjct: 183 AHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYCARIISFGVGAG 242
Query: 277 CDVRL 281
DV++
Sbjct: 243 ADVQI 247
>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum F str. Langeland]
gi|384461859|ref|YP_005674454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Clostridium botulinum F str. 230613]
gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum F str. Langeland]
gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Clostridium botulinum F str. 230613]
Length = 462
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 148/263 (56%), Gaps = 27/263 (10%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVGAVL-AEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRL 281
N + F ++ G D +
Sbjct: 234 NFESDK-----FKVYKIGTDKKF 251
>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Veillonella parvula DSM 2008]
gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Veillonella parvula
DSM 2008]
Length = 452
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 16/230 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G FD H+FI+ + KG G I +KG VEG
Sbjct: 28 ISTDTRTI--ESGFLFVALKGDTFDGHDFINTAIE-KGATGAI-------VEKGRA-VEG 76
Query: 109 NGNVNTLNSLV---NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ N+LV N+A Y R RF +V +TGS GK+TTK M+A L + NV ++
Sbjct: 77 IACIEVDNTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVLGT-EFNVLKTE 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E L
Sbjct: 135 KNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
GS E +A AKGE+ + V +LN DDP V + + + +G R
Sbjct: 195 GSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKGKTITYGIER 244
>gi|310642991|ref|YP_003947749.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Paenibacillus polymyxa SC2]
gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus polymyxa SC2]
gi|392303805|emb|CCI70168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Paenibacillus polymyxa M1]
Length = 467
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 130/245 (53%), Gaps = 32/245 (13%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F + G+ FD H ++ + +G + W K
Sbjct: 29 VFTDSR--RPQSLGLFVPLVGERFDGHHYVQQIVSERGATAYL-------WQKDHGAPPT 79
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L ++A Y R + S +VG+TGS GK+TTK ++ AL
Sbjct: 80 VNAIEVE-----DTLEALQHLAAAYLRETGVS--VVGITGSNGKTTTKDIVN-ALLGTTF 131
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI VLEMGMSG+GEI LA +A+P++ V+ N+G+
Sbjct: 132 KVHKTEGNYNNHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQPDVAVITNIGE 191
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL+ + P G+ FG
Sbjct: 192 SHLLQLGSRTEIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVKPEGLELFTFGL 251
Query: 274 RRGCD 278
D
Sbjct: 252 AADND 256
>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Chloroflexus aurantiacus J-10-fl]
gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Chloroflexus aurantiacus J-10-fl]
Length = 483
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 144/277 (51%), Gaps = 28/277 (10%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDK- 101
G + TD+R + P F A+TG+ D H F++ + ++ + + +N D
Sbjct: 18 GPVVTDSREVTPGS--LFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTALASNLDTV 75
Query: 102 -------GFVQVEGNGNV-----------NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
Q + V + L +L +A Y R F+ ++G+TGSVGK
Sbjct: 76 ARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM-FTPTVIGITGSVGK 134
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK ++A A+ S + +S ++N+ V + +L+G+ +AVLEMGM GEI L
Sbjct: 135 TSTKEVVA-AVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFL 193
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +ARP+I +V NVG SHLE LGS+E +A AK E+ + C+LNADD VA +
Sbjct: 194 ATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRVAAMASR 253
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
R + +G+ DVRL+ V++G G+++ + E
Sbjct: 254 TAARVLTYGYAPNADVRLLDV-VSHGLYGIELTVGYE 289
>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium cellulovorans 743B]
Length = 395
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 137/241 (56%), Gaps = 18/241 (7%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ ++ G ++ GP ++ DTR L K + AI G++FD ++F+ E
Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLE--KGCIYIAIKGENFDGNDFV-VEAIN 61
Query: 85 KGCVGVIGNQVCNNW-----DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG I +++ V VE NT +L+ +A Y RN + ++GVTG
Sbjct: 62 KGAELCIIDKIAYTEAEVLNKSAIVLVE-----NTKKALMQLAKYYRN-KLDIKVIGVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA AL S + VF++ GN+NN +G+ L + +D D+AVLEMGMS E
Sbjct: 116 STGKTSTKDLIAAAL-SEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ +ARP++ V+ N+G SH+E+L + E++ +AK EI ++ ++N DD ++
Sbjct: 175 IQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLST 234
Query: 260 L 260
+
Sbjct: 235 I 235
>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
sp. Y-400-fl]
gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
sp. Y-400-fl]
Length = 497
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 144/277 (51%), Gaps = 28/277 (10%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDK- 101
G + TD+R + P F A+TG+ D H F++ + ++ + + +N D
Sbjct: 32 GPVVTDSREVTPGS--LFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTALASNLDTV 89
Query: 102 -------GFVQVEGNGNV-----------NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
Q + V + L +L +A Y R F+ ++G+TGSVGK
Sbjct: 90 ARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM-FTPTVIGITGSVGK 148
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK ++A A+ S + +S ++N+ V + +L+G+ +AVLEMGM GEI L
Sbjct: 149 TSTKEVVA-AVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFL 207
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +ARP+I +V NVG SHLE LGS+E +A AK E+ + C+LNADD VA +
Sbjct: 208 ATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRVAAMASR 267
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
R + +G+ DVRL+ V++G G+++ + E
Sbjct: 268 TAARVLTYGYAPNADVRLLDV-VSHGLYGIELTVGYE 303
>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 6_1_27]
gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 6_1_27]
Length = 466
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 136/259 (52%), Gaps = 18/259 (6%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
SN +T++++ E+ G + TDTR + F A+ G FD H+FI+
Sbjct: 13 SNMAEFTLSQVLEATKGTSAHTDNIKFLDVSTDTRTI--ESGFLFVALKGDTFDGHDFIN 70
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV---NMACYARNSRFSGVLVG 136
+ KG G I +KG VEG + N+LV N+A Y R RF +V
Sbjct: 71 AAIE-KGATGAI-------VEKG-RSVEGIACIEVDNTLVAYQNLARYHRR-RFDIPVVA 120
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK+TTK M+A L + NV ++ N+NN +G+ +L+ + + V+EMGM G
Sbjct: 121 ITGSSGKTTTKEMVAAVLGT-EFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRG 179
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
G+I ELA +A P + ++ NVG SH+E LGS E +A AKGE+ + V +LN DDP
Sbjct: 180 LGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPY 239
Query: 257 VANLTVPRGVRKVFFGWRR 275
V + + + +G R
Sbjct: 240 VKAMDRLAKGKTITYGIER 258
>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 3_1_44]
gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 3_1_44]
Length = 466
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 16/230 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G FD H+FI+ + KG G I +KG VEG
Sbjct: 42 ISTDTRTI--ESGFLFVALKGDTFDGHDFINTAIE-KGATGAI-------VEKGRA-VEG 90
Query: 109 NGNVNTLNSLV---NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ N+LV N+A Y R RF +V +TGS GK+TTK M+A L + NV ++
Sbjct: 91 IACIEVDNTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVLGT-EFNVLKTE 148
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E L
Sbjct: 149 KNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELL 208
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
GS E +A AKGE+ + V +LN DDP V + + + +G R
Sbjct: 209 GSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKGKTITYGIER 258
>gi|434391816|ref|YP_007126763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 7428]
gi|428263657|gb|AFZ29603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 7428]
Length = 450
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 140/260 (53%), Gaps = 26/260 (10%)
Query: 25 PIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
P+ + EI G I TD+R + P + F A+ G+ FD H+F+S L
Sbjct: 18 PVLSKTEITTQFTG----------INTDSRTIKPG--EVFVALRGEKFDGHKFVSAALE- 64
Query: 85 KGCVGVIGNQ--VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG + I + N F+QVE +TL + +A + R +FS ++ +TGSVG
Sbjct: 65 KGAIAAIVDSGFQSPNESIPFLQVE-----DTLKAYQQIAHWWRQ-QFSIPVIAITGSVG 118
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK +IA L + G +V ++ N+NN +GV +L+G+ D AV+EM M KGEI
Sbjct: 119 KTTTKELIAAVLATQG-SVLKTQANYNNEIGVPKTLLGLGSEHDYAVVEMAMRAKGEIAL 177
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP--LVANL 260
L ++A P I V+ NVG +H+E LGS + +A AK E+ + V +LN D+ +
Sbjct: 178 LTQIACPTIGVITNVGTAHIERLGSEQAIAEAKCELLAQMPNSAVAILNHDNSRLMKTAA 237
Query: 261 TVPRGVRKVFFGWRRGCDVR 280
TV +G + V +G G DVR
Sbjct: 238 TVWQG-QTVTYGL-EGGDVR 255
>gi|442323134|ref|YP_007363155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus stipitatus DSM 14675]
gi|441490776|gb|AGC47471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus stipitatus DSM 14675]
Length = 467
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 10/245 (4%)
Query: 44 GPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWD 100
GP G +CTDTR L + F A+ G+ FDAH F+ G V+ +
Sbjct: 23 GPAGFTAVCTDTRAL--TQGCLFVALVGERFDAHSFVDAAARGGAAAAVVAKGRTLPVLP 80
Query: 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
+GFV E +TL +L + + R RF + V GS GK+TTK M+ L + G
Sbjct: 81 EGFVLYEVE---DTLRALGALGRHHRQ-RFRIPICAVGGSNGKTTTKEMVGAILATRG-P 135
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
++ GN+NN +GV L+L ++ AV+E+GM+ GEI L R+ +P+ V+ V
Sbjct: 136 ALKTEGNFNNEIGVPLTLFRLEPQHVAAVIEVGMNQPGEIERLTRVVQPDAGVITVVQPE 195
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
HLE LGSL+ VA A+GE+FQE G V+N DD L+ ++ FG DVR
Sbjct: 196 HLEGLGSLQGVANAEGEMFQEMGAGTTIVVNVDDALIPAQAERSAANRLTFGRAESADVR 255
Query: 281 LVAAQ 285
LV+ +
Sbjct: 256 LVSVE 260
>gi|30248990|ref|NP_841060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase protein
[Nitrosomonas europaea ATCC 19718]
gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase protein
[Nitrosomonas europaea ATCC 19718]
Length = 452
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC---NNWDKGFVQ 105
+ TD+R L P F A++G+ FD H FIS + ++ D G+++
Sbjct: 25 VSTDSRTLKPGD--LFIALSGEQFDGHRFISAAIENGAVTAMVSADTAILPTQPDFGWIK 82
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE-SLGV-NVFQ 163
V+ +T L +A R R++ LV VTGS GK+T K MIA G+ NV
Sbjct: 83 VK-----DTRLGLGQLAASWRR-RYTLPLVAVTGSNGKTTVKEMIAAIFRCEFGLENVLA 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN +GV L+ +D AV+EMGM+ GEI L+R+A P I V+ N G +H+E
Sbjct: 137 TTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLAAPTIAVITNAGTAHIE 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
LG+ E +ARAKGEIF+ + V ++NADDP
Sbjct: 197 YLGTTEAIARAKGEIFEGLEEQGVAIINADDP 228
>gi|423462499|ref|ZP_17439293.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X2-1]
gi|401131793|gb|EJQ39443.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X2-1]
Length = 458
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A RN + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRN-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP KV FG R D
Sbjct: 233 RVPEMNLIAEKVTFGDARAND 253
>gi|430761873|ref|YP_007217730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430011497|gb|AGA34249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 458
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 16/230 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T E+A +V G++ G + D+R P F A+ G+ FD H+F+ PEL +
Sbjct: 5 TAAELAGAVAGRLHGDGERSFRGVSRDSRASWPEA--LFVALRGERFDGHDFVRPEL--E 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
V ++ + + + V +T +L + Y R +R + +V +TGS GK+T
Sbjct: 61 AAVLLVERPLDDPRPQVVVD-------DTTGALARLGVYWR-TRCTARVVALTGSNGKTT 112
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M+ L +G +V + GN NN +GV L+L+ + R+VD AV+EMG + GEI L R
Sbjct: 113 TKEMLRSILSGVG-SVHATEGNLNNHIGVPLTLLAMPRSVDYAVIEMGANHAGEIAFLTR 171
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADD 254
+ARPE+ ++ N G +HL+ GSLE VARAK EI+ G V+N DD
Sbjct: 172 LARPEVALITNAGRAHLDGFGSLEGVARAKAEIYAGLPAQGGTAVINLDD 221
>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. C56-T3]
gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. C56-T3]
Length = 458
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 144/271 (53%), Gaps = 18/271 (6%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGLKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+A+P+ V+ N+G+SHL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
L +PR V V FG D ++ GG
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGG 265
>gi|390453131|ref|ZP_10238659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Paenibacillus peoriae KCTC 3763]
Length = 467
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 32/245 (13%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F ++G+ FD H ++ + G + W K
Sbjct: 29 VFTDSR--KPQSQGLFVPLSGERFDGHNYVQQIMSEAGAAAFL-------WQKDHGAPPA 79
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L +A Y + S +VG+TGS GK+TTK ++ L++
Sbjct: 80 GNAIEVE-----DTLEALQQLAAAYLCETGVS--VVGITGSNGKTTTKDIVTALLDTT-F 131
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI +LEMGMSG+GEI L +ARP++ V+ N+G+
Sbjct: 132 KVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLTNIARPDVAVITNIGE 191
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL+ + P G++ FG
Sbjct: 192 SHLLQLGSRAEIARAKLEIASGLKPGGLLIYNGDEPLLPQVLAEPATVKPEGLKWFTFGI 251
Query: 274 RRGCD 278
+ D
Sbjct: 252 SKNND 256
>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Subdoligranulum variabile DSM 15176]
gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Subdoligranulum variabile DSM 15176]
Length = 453
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 125/251 (49%), Gaps = 15/251 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F G+ D H F + Y G +I N + V
Sbjct: 24 VVTDSRKVEPGC--VFVCFPGERVDGHTFAA-GAYQNGAAYIIANHPVDG-------VPA 73
Query: 109 NGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ V +S + M A N R FS ++GVTGSVGK+TTK L + G N ++ G
Sbjct: 74 DRTVVVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFG-NTLKTEG 132
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV +L ++ A + AV+EMGM GEI L R RP ++ +G SHLE+LG
Sbjct: 133 NQNNEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLENLG 192
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E++ +AK EI G VLNAD+ L+ VP +R V+FG + DVR A +
Sbjct: 193 TRENILKAKMEICAGLPDGAPLVLNADNDLLPTAQVPGRLRAVWFGIEQEADVR--AENI 250
Query: 287 ANGGLGVQVVL 297
G G L
Sbjct: 251 QTGAQGTTFTL 261
>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens CM4]
gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens CM4]
Length = 487
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 131/268 (48%), Gaps = 15/268 (5%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
S++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 SDAPLWTPAALEAATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ ++ + V G G+ L+++ + AR +R +V
Sbjct: 58 RAALDKGAGAAVVAEARAKEFEGVGSVLAVPGEGDDPVLDAMRRLGLAAR-ARTEAAIVA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + A V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDVR 280
L+A+ R R + FG DVR
Sbjct: 236 YERLLAHAQASRAGRVITFGEHAAADVR 263
>gi|365840196|ref|ZP_09381397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeroglobus geminatus F0357]
gi|364562251|gb|EHM40119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeroglobus geminatus F0357]
Length = 457
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 19/243 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++T E+ + +IL+ G + + TDTR + ++ F A+ G+ FD H+FI
Sbjct: 3 MFTDAEVVLATGARILQQGRRDMLYRNVTTDTRTVG--EDDLFAALKGEKFDGHDFIEQA 60
Query: 82 LYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ G GVI + G FV NT + ++A + R RFS +V V
Sbjct: 61 V-SDGAAGVIVEDAARLYPDGDYTIFVVK------NTRKAYQDLALFHRR-RFSIPVVAV 112
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK++T+++IA LE NV Q+ N+NN +G+ +L+ + + V+E+GM G
Sbjct: 113 TGSAGKTSTRALIATVLEQ-KYNVLQTEKNFNNEIGLPRTLLQLTKEHGACVVELGMRGL 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
G+I EL +A P + VV NVG SH+E LGS +A+AKGE+ + VLN DD V
Sbjct: 172 GQIKELVDIAEPTVGVVTNVGKSHIELLGSQAQIAKAKGELVEALGSDGTAVLNQDDKRV 231
Query: 258 ANL 260
A +
Sbjct: 232 AAM 234
>gi|374602397|ref|ZP_09675390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus dendritiformis C454]
gi|374391999|gb|EHQ63328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus dendritiformis C454]
Length = 474
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 18/226 (7%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNM 121
F +TG+ FD H ++ L G G + ++ + VE +T +L +
Sbjct: 43 FVPLTGERFDGHAYVEETLRA-GAAGALWQADRALPGASAPLIIVE-----DTYAALQRL 96
Query: 122 AC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
A Y + +V VTGS GK+TTK ++A L S V ++ GN+NN +G+ L+++
Sbjct: 97 AAAYLAEGQVK--VVAVTGSNGKTTTKDLVASVL-SQRYRVHKTDGNFNNHIGLPLTVLS 153
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ R +IAVLEMGMSG+GEI L+++ARP++ V+ N+GD+HL LGS E++ARAK EI
Sbjct: 154 MPRETEIAVLEMGMSGRGEIELLSQLARPDVAVITNIGDAHLLQLGSREEIARAKLEITA 213
Query: 241 ESKLGDVCVLNADDPLVANLTV----PRG-VRKVFFGWRRGCDVRL 281
+ G + V + D+PLV +L + P G +R + FG C++RL
Sbjct: 214 GLRDGGLLVCHGDEPLV-DLALSEREPGGRIRLLRFGLGERCELRL 258
>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum ATCC 824]
gi|337737345|ref|YP_004636792.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum DSM 1731]
gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum ATCC 824]
gi|336293011|gb|AEI34145.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum DSM 1731]
Length = 452
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 140/239 (58%), Gaps = 18/239 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T NEIA++VNGK++ G + + DTR L+ K F AI G++F+ ++FI +
Sbjct: 1 MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLS--KGAIFIAINGENFNGNKFIHNAVQ 58
Query: 84 GKGCVGVIGNQVCNNWDK-----GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG I +++ D + VE +T +L+++A + R S + +V +T
Sbjct: 59 -KGAALCIVDEIHFEKDSFKEDISILLVE-----DTKKALLDLAEFYR-STLNIKVVAIT 111
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK + A L S VF++ GN+NN +G+ L + +D++ ++AVLEMGM+
Sbjct: 112 GSTGKTSTKDITASVLRS-KFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFN 170
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
EI +A+ ARP+I ++ N+G SH+E+L S E++ +AK EI ++ ++N D+ L+
Sbjct: 171 EIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL 229
>gi|423081334|ref|ZP_17069942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 002-P50-2011]
gi|423084607|ref|ZP_17073107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 050-P50-2011]
gi|423092693|ref|ZP_17080497.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 70-100-2010]
gi|357551000|gb|EHJ32804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 002-P50-2011]
gi|357552177|gb|EHJ33952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 050-P50-2011]
gi|357553563|gb|EHJ35310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 70-100-2010]
Length = 457
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 16/283 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
V K+ FG+ + DV + + L V+ ++E
Sbjct: 235 KEKEHVYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE 277
>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
15579]
gi|187773515|gb|EDU37317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sporogenes ATCC 15579]
Length = 462
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 142/246 (57%), Gaps = 22/246 (8%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVQTAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+DK ++VE T +L+++A Y + S+ +V +T
Sbjct: 63 GASLCIVSEI--NFDKEKIGKSSYVIKVES-----TNKALLDLAKYYK-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK E+ + ++N D+ L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLS 233
Query: 259 NLTVPR 264
N +
Sbjct: 234 NFESDK 239
>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
punctiforme PCC 73102]
gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
punctiforme PCC 73102]
Length = 451
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 121/209 (57%), Gaps = 10/209 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R L + F A+ G FD H+F+ + ++ + N GF +
Sbjct: 33 IQTDSRTL--KLGEVFVALRGDKFDGHKFVPTAIAKGAIAAIVDFEYEN---PGFPVLRV 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+ RF+ ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 88 K---DTLKAYQQIGRWWRD-RFNIPVIGVTGSVGKTTTKELIAAVLGTKG-QVHKTYGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G+G+I EL ++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELGAENDYAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A AK E+ E V ++N D+PL+
Sbjct: 203 EAIAEAKCELLAEMAADSVAIINHDNPLL 231
>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Azorhizobium caulinodans ORS 571]
gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
caulinodans ORS 571]
Length = 476
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 122/238 (51%), Gaps = 14/238 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG-NQVCNNWDKGFVQVE 107
I DTR L P FFAITG++ D H +++ L + V+ ++V D V V
Sbjct: 30 ISIDTRTLEPG--DAFFAITGENSDGHAYVAKALENGASLAVVAADRVQGLPDGPLVVVP 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L +L ++ AR +R +V VTGSVGK+TTK + +AL + G S +
Sbjct: 88 -----DVLGALTDLGKAAR-ARSEARIVAVTGSVGKTTTKEALRIALSADG-ETHASAAS 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN GV LSL R+ V E+GM+ GEI L RM RP + V+ V H+
Sbjct: 141 YNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPLVRMVRPHVAVITTVEAVHIAQFSG 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV---PRGVRKVF-FGWRRGCDVRL 281
+E++A AK EIF + G VLN D+PL L +GV+ + FG C+VRL
Sbjct: 201 IEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVASARAKGVKNIVSFGADPACEVRL 258
>gi|384458854|ref|YP_005671274.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum EA 2018]
gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum EA 2018]
Length = 455
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 140/239 (58%), Gaps = 18/239 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T NEIA++VNGK++ G + + DTR L+ K F AI G++F+ ++FI +
Sbjct: 4 LTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLS--KGAIFIAINGENFNGNKFIHNAVQ 61
Query: 84 GKGCVGVIGNQVCNNWDK-----GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG I +++ D + VE +T +L+++A + R S + +V +T
Sbjct: 62 -KGAALCIVDEIHFEKDSFKEDISILLVE-----DTKKALLDLAEFYR-STLNIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK + A L S VF++ GN+NN +G+ L + +D++ ++AVLEMGM+
Sbjct: 115 GSTGKTSTKDITASVLRS-KFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
EI +A+ ARP+I ++ N+G SH+E+L S E++ +AK EI ++ ++N D+ L+
Sbjct: 174 EIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLL 232
>gi|355670274|ref|ZP_09057129.1| hypothetical protein HMPREF9469_00166 [Clostridium citroniae
WAL-17108]
gi|354816346|gb|EHF00934.1| hypothetical protein HMPREF9469_00166 [Clostridium citroniae
WAL-17108]
Length = 482
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 143/278 (51%), Gaps = 36/278 (12%)
Query: 28 TINEIAESVNGKILKWGPP----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T E+ ++V G++L WG G I D+R + F I G++ DAH+FI L
Sbjct: 5 TAAELTQAVGGRLL-WGEGEILIGHISLDSRKM--EGGDLFVPIIGENVDAHDFICQAL- 60
Query: 84 GKGCVGVIGNQVCNNWD---------------------KGFVQVEGNGNVNTLNSLVNMA 122
G G V ++ + D ++QVE +T +L +
Sbjct: 61 GNGASAVFTSRHHSPEDVQETVKAQSGDDSARRERALAAAWIQVE-----DTRKALQDFG 115
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R R + LVG+TGSVGK+TT+ MIA+AL S G V+++ GN N++VGV +++ I
Sbjct: 116 AYCRAGR-TLPLVGITGSVGKTTTREMIAVAL-SAGFCVYKTPGNSNSQVGVPITIAEIP 173
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ I V+E+GMS GE+ +AR+A+ V+ N+G +H+E LGS +++ K I
Sbjct: 174 QEAQIGVIELGMSEPGEMTRIARVAQVNCAVMTNIGVTHIEQLGSQQNILEEKLHIQDNM 233
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
+ VLN DD L+ ++ G RK+ +G GC R
Sbjct: 234 AADGLLVLNGDDGLLRDVVPENGRRKILYGLSEGCHYR 271
>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus torques L2-14]
Length = 461
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 138/256 (53%), Gaps = 15/256 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPN-----KNQWFFAITGQHFDAHEFISPE 81
T++EIA++ G + +G P + + +A + K+ F AI G D H FI P+
Sbjct: 4 MTLSEIADACCG--IYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ G + + Q + D +++V + +L ++A + R S +VG+TGSV
Sbjct: 61 VMEAGALCSLSEQDLGDVDYPYIRVS-----SCTEALKDLAEHYRRS-LDIKVVGITGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA L S NV ++ GN+NN +G+ L++ I ++AVLEMG+S G++
Sbjct: 115 GKTSTKEMIASVL-SEKYNVLKTEGNFNNEIGLPLTVFNIREEHEVAVLEMGISHFGDMK 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA++ARP++ V+ N+G +HLE+LG+ + + + K + + N DD + + T
Sbjct: 174 PLAKIARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGSVIFNGDDDKLKSYT 233
Query: 262 VPRGVRKVFFGWRRGC 277
G V+FG C
Sbjct: 234 SRDGRTPVYFGLTSSC 249
>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14163]
gi|355630350|ref|ZP_09050809.1| hypothetical protein HMPREF1020_04888 [Clostridium sp. 7_3_54FAA]
gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14163]
gi|354818698|gb|EHF03165.1| hypothetical protein HMPREF1020_04888 [Clostridium sp. 7_3_54FAA]
Length = 455
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 149/285 (52%), Gaps = 25/285 (8%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I +I E+VNG++L I D+R + + F + G+ DAH F+S + +
Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTM--KGDDLFVPLIGEKADAHRFLS-QAFEN 62
Query: 86 GCVGVIGNQ--VCNNWDKG-FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + ++ C G ++VE +T +L ++ Y R SR S LVG+TGSVG
Sbjct: 63 GAAASLTSEHDTCPEGITGALIRVE-----DTKKALQDIGRYIR-SRLSLPLVGITGSVG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ MIA AL S G F++ N N++VGV +++ I + +I VLE+GMS GE+
Sbjct: 117 KTTTREMIAAAL-SAGYRTFKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEV 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
+A +AR + V+ N+G +H+E+LGS E++ + K I K G LN D+ L+ ++
Sbjct: 176 IADIARVDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRA 235
Query: 263 PRGVRKVFFGWRRGCDVRLV---------AAQVANGGLGVQVVLE 298
G F+G C R V A + +G V VVLE
Sbjct: 236 KDGCETSFYGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLE 280
>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
proteobacterium HTCC2143]
gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
proteobacterium HTCC2143]
Length = 452
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 11/228 (4%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+++IA G++ +CTDTR ++P F A+ G H+D ++F+S +
Sbjct: 7 LSDIARETGGQLFGEASFSNVCTDTRSVSPG--DLFVALAGDHYDGNQFVSDAVIAGAVA 64
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
+ V V+V+ +T +L +A R RFSG +V +TGS GK+TTK
Sbjct: 65 AITSEAVTAAIPS--VKVD-----DTRFALGQIARLNRR-RFSGPVVALTGSAGKTTTKE 116
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
M+A L G V + N+NN +GV L+L+ ID + AV+EMG S G+I L + A
Sbjct: 117 MVARILCERG-EVLATEANFNNEIGVPLTLLAIDPSHQFAVVEMGASHIGDIAYLTQFAE 175
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
P I V+ N H+E GS+E VA+ KGEIF+ G V ++N D+P
Sbjct: 176 PTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFENLPEGGVAIINQDEPF 223
>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 137 str. F0430]
gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 137 str. F0430]
Length = 329
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G+ FD +F + L ++ V + K + G
Sbjct: 31 ITTDTRKV--QAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTPG 88
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
G +TL + +A +A +F +V VTGS GK+TTK + A AL G V ++
Sbjct: 89 AVIGVTDTLAAYQQIA-HAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGA-VCRTAA 146
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+L+G+ AV+EMGM G+G+I LA +A P + +V NVG++H+E LG
Sbjct: 147 NYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIVTNVGETHMELLG 206
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAA 284
S+E++ARAK E+ + G + +LNADD VA + GVR + +G R D+R A
Sbjct: 207 SIENIARAKSELVEAIAPGGIVILNADDARVAAMRAQAADGVRILTYGIRAKADIRAQAL 266
Query: 285 QVA 287
+ A
Sbjct: 267 RSA 269
>gi|339441959|ref|YP_004707964.1| hypothetical protein CXIVA_08950 [Clostridium sp. SY8519]
gi|338901360|dbj|BAK46862.1| hypothetical protein CXIVA_08950 [Clostridium sp. SY8519]
Length = 560
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 143/277 (51%), Gaps = 25/277 (9%)
Query: 27 WTINEIAESVNGKILKWGPPGII-------CTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ IA +V G+ + GP + TD+R A K F + G+ D H FI
Sbjct: 8 LTLRNIAAAVQGQYI--GPEEALDTEITGAVTDSR--AVQKGGLFIPVVGKRADGHRFI- 62
Query: 80 PELYGKGCVGVIGNQVCNN---WDKGFVQVEGNGNVN--------TLNSLVNMACYARNS 128
P+++ +G V+ + + G V G + +L +L ++A Y R S
Sbjct: 63 PDVFAQGAAAVLSERKLREEELYGTGDSTVTDAGRKDRPYILVKSSLQALKDIAEYYR-S 121
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+ GSVGK++TK MIA L S NV ++ GN+NN VG+ L+L+ I + A
Sbjct: 122 QLDIPVIGIAGSVGKTSTKEMIASVL-SQKYNVLKTEGNFNNEVGMPLTLLKIRPEHEAA 180
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
V+E+G+S GE+ LA++ARP I V+ N+G HLE LG + V RAK EIF +
Sbjct: 181 VIELGISDFGEMHRLAKVARPNICVMTNIGQCHLEFLGDRDGVLRAKSEIFDFLRKDGAV 240
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
VLN +D + + P GV+ + + G R++ +
Sbjct: 241 VLNGNDDKLNTIGTPAGVQPMRYFVEDGSAERVMEPE 277
>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[butyrate-producing bacterium SS3/4]
Length = 462
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 143/261 (54%), Gaps = 16/261 (6%)
Query: 37 NGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94
G +L G G++ R+ + F I G+ DAH+F+ ++ KG V+ ++
Sbjct: 13 TGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLE-QVAEKGAGAVLTSE 71
Query: 95 VCNNWDK------GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
++ ++ V+ +T +L + Y R R + +VGVTGSVGK+TT+
Sbjct: 72 HKEKTEEMAETSCAWIAVD-----DTKKALQAVGRYLRK-RLTLPIVGVTGSVGKTTTRE 125
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
MIA AL S +V+++ GN N++VGV +++ I + ++ VLE+GMS GE+ +AR+A+
Sbjct: 126 MIAAAL-SARFHVYKTPGNSNSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAK 184
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
P++ V+ N+G +H+E LGS E++ R K I G + +LN DD ++ GV+
Sbjct: 185 PDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDDMLCRTRGKVGVKT 244
Query: 269 VFFGWRRGCDVRLVAAQVANG 289
V++G CD R V + +G
Sbjct: 245 VYYGTGETCDYRAVDLVLMDG 265
>gi|429735411|ref|ZP_19269376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429158919|gb|EKY01445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 467
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 132/258 (51%), Gaps = 8/258 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G++FD +F + L +I + + K + +G
Sbjct: 30 ITTDTRKI--SDGDLFIALRGENFDGADFAADALNKGAAAVLIAEPISDPVQKALKKAKG 87
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL + +A YA +F +V +TGS GK+TTK + A L G V ++
Sbjct: 88 AVLTVADTLTAYQAIA-YAWRIKFDIPVVAITGSNGKTTTKDLTAAVLSGRGA-VCRTEA 145
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P + +V NV + H+E LG
Sbjct: 146 NYNNEVGLPLTLLGITAEDSAAVVEIGMRGMGQIAALAPVAAPNVGIVTNVCEVHMELLG 205
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD--PLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD GVR + +G DVR A
Sbjct: 206 SIENIAKAKAELVEAIPAGGTVILNADDARVAAMRARAAEGVRVLTYGISADADVRAEAL 265
Query: 285 QVANGGLGVQVVLEKERE 302
+ A GG V ER
Sbjct: 266 RCAAGGSQFMVTWANERH 283
>gi|422343141|ref|ZP_16424069.1| hypothetical protein HMPREF9432_00129 [Selenomonas noxia F0398]
gi|355378448|gb|EHG25628.1| hypothetical protein HMPREF9432_00129 [Selenomonas noxia F0398]
Length = 469
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 134/258 (51%), Gaps = 8/258 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G+ FD +F + L ++G + + +K + +G
Sbjct: 31 ITTDTRKI--SSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKG 88
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ L + +A +A +F ++ +TGS GK+TTK + A L G V ++
Sbjct: 89 TVLKAEDGLRAYQAIA-HAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRG-KVCRTAA 146
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P I +V NV + H+E LG
Sbjct: 147 NYNNEVGLPLTLLGIMPEDFAAVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLG 206
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD VA + GVR + +G DVR A
Sbjct: 207 SIENIAKAKAELVEAIPSGGTVILNADDSRVAAMRSFAADGVRILTYGIDADADVRAEAL 266
Query: 285 QVANGGLGVQVVLEKERE 302
Q A G V ER
Sbjct: 267 QCAADGSRFMVTYANERH 284
>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A3 str. Loch Maree]
gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A3 str. Loch Maree]
Length = 462
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 146/261 (55%), Gaps = 27/261 (10%)
Query: 31 EIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + KG
Sbjct: 8 EIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EKGA 64
Query: 88 VGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
I +++ N+ +G ++VE NT +L+++A Y R S+ +V +TGS
Sbjct: 65 ALCIVSEI--NFSEGKIGESSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+ EI
Sbjct: 117 TGKTSTKDLVGAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+A A+P+I ++ N+G SH+E+LGS E++ +AK E+ + ++N DD ++N
Sbjct: 176 HNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNF 235
Query: 261 TVPRGVRKVFFGWRRGCDVRL 281
+ F ++ G D +
Sbjct: 236 ESDK-----FKVYKIGTDKKF 251
>gi|423721479|ref|ZP_17695661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus thermoglucosidans TNO-09.020]
gi|383365530|gb|EID42825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus thermoglucosidans TNO-09.020]
Length = 458
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I V+G+ L G I + TDTR + K + + G FD H F+ L
Sbjct: 5 TLRDIQAMVDGRGLAAGFFDIMVHGVSTDTRTI--QKGNLYVPLKGAKFDGHTFVQDAL- 61
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG V+ ++ + D + V+ +TL +L +A R + S ++G+TGS
Sbjct: 62 DKGASAVLWSETEGSPPADVPVIVVD-----DTLRALQRLAHRYRK-QLSAKVIGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK ++A AL + V ++ GN NN +GV L+L+ ++ V++AV+EMGMS GEI
Sbjct: 116 GKTTTKDIVA-ALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----V 257
L+ +A P+ ++ N+G+SHL+ LGS E +A+AK EI K + V N D+PL V
Sbjct: 175 LLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRV 234
Query: 258 ANLTVPRGV 266
A+L +P V
Sbjct: 235 AHLPLPEHV 243
>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. D5]
gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. D5]
Length = 456
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 127/226 (56%), Gaps = 12/226 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + K+ F AI G D H FI P+ G + + + + ++ V
Sbjct: 31 VTIDSRKI--QKDCLFIAIRGARVDGHMFI-PQSIHDGALCAVSEKRIESASYPYIMV-- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L + Y R+ R +VG++GSVGK++TK MIA L NV ++ GN+
Sbjct: 86 NSCAQALKDIAEH--YRRSLRLK--VVGISGSVGKTSTKEMIASVL-GQKYNVLKTEGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ I ++AVLEMG+S GE+ LA+MARP++ V+ N+G +HLE L S
Sbjct: 141 NNEIGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSR 200
Query: 229 EDVARAKGEIF-QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW 273
E + +AK E+F + GD+ +LN DD ++A++T + VFFG
Sbjct: 201 EGILKAKTEMFLYMNPKGDI-ILNGDDDMLASVTPANHIEPVFFGL 245
>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
M21/2]
gi|158444084|gb|EDP21088.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii M21/2]
Length = 460
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 9/234 (3%)
Query: 38 GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN 97
GK+ ++ TD+R + P F A G+ FD H+F + L V+ + V
Sbjct: 17 GKLTSDPEVALVTTDSREVKPG--CIFVAFPGERFDGHDFAARALEQGAAYVVVNHPV-- 72
Query: 98 NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
G + + ++ ++++ M R S++ +VGVTGSVGK+TTK M AL
Sbjct: 73 ---PGVPEEKAILCPDSYHAMMVMGANYR-SQYHPKMVGVTGSVGKTTTKQMTYAALSGF 128
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G + ++ GN NN +G+ +L+ ++ + + AV+EMGMS GEI LAR ARP++ ++ +
Sbjct: 129 GETI-KTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCI 187
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
G SH+ +LGS E++ +AK EI G VLN DDP + +P VR V+F
Sbjct: 188 GVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAHVRPVWF 241
>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ATCC 17745]
gi|416999074|ref|ZP_11939743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ACS-068-V-Sch12]
gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ATCC 17745]
gi|333977227|gb|EGL78086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ACS-068-V-Sch12]
Length = 452
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 125/230 (54%), Gaps = 16/230 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + F A+ G FD H+FI+ + KG G I +KG VEG
Sbjct: 28 VSTDTRTI--ESGFLFVALKGDTFDGHDFINAAIE-KGATGAI-------VEKG-RSVEG 76
Query: 109 NGNVNTLNSLV---NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ N+LV N+A Y R RF +V +TGS GK+TTK M+A L + NV ++
Sbjct: 77 IACIEVDNTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVLGT-EFNVLKTE 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E L
Sbjct: 135 KNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
GS E +A AKGE+ + V +LN DDP V + + + +G R
Sbjct: 195 GSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDRLAKGKTITYGIER 244
>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 630]
gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Clostridium
difficile 630]
Length = 457
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 145/283 (51%), Gaps = 16/283 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D + V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIDVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
V K+ FG+ + DV + + L V+ ++E
Sbjct: 235 KEKEHVYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE 277
>gi|417959878|ref|ZP_12602597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-1]
gi|380332409|gb|EIA23224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-1]
Length = 450
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 25/264 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG--KGCV---GVIGNQVCNNWDKGF 103
I DTR + N F AI G++FD +++I + K C+ ++ + +D
Sbjct: 24 ISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKGVKLCIIDRNYFVDKEFDPYDVSI 81
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ V+ NTL +L N+A Y R S+ L+ VTGSVGK+TTK +I L S V++
Sbjct: 82 ILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGSVGKTTTKDLIYDFLSS-NYKVYK 134
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
S+GN NN +G+ +SL+ ID +I V E+GM+ GEI L + RP I V+ N+G SH+E
Sbjct: 135 SFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEIDHLVSILRPHIGVITNIGVSHIE 194
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV-----ANLTVPRGVRKVFFGWRRGCD 278
L + E++ +AK EI D+ ++N +D L+ ++ V R G+ CD
Sbjct: 195 FLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTVQSSDFIVSR------IGFSEECD 248
Query: 279 VRLVAAQVANGGLGVQVVLEKERE 302
+ +++ + V+ + E
Sbjct: 249 MYASNEEISLNKIKFDVLYNGKNE 272
>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 158 str. F0412]
gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 158 str. F0412]
Length = 452
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + F A+ G FD H+FI+ + KG G I + +G + +E
Sbjct: 28 VSTDTRTI--ESGFLFVALKGDTFDGHDFINTAIE-KGATGAIVEK--GRAVEGIICIEV 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + N+A Y R RF +V +TGS GK+TTK M+A L + NV ++ N+
Sbjct: 83 E---NTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVLGT-EFNVLKTEKNF 137
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E LGS
Sbjct: 138 NNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSR 197
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
E +A AKGE+ + V +LN DDP V + + + +G R
Sbjct: 198 EAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKGKTITYGIER 244
>gi|347751907|ref|YP_004859472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 36D1]
gi|347584425|gb|AEP00692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 36D1]
Length = 458
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 23/239 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+C D+R + K + +TG+H D H+++ + + +G + W K
Sbjct: 31 VCIDSRKI--EKGNLYVPLTGRHADGHQYVE-DAFRRGAAASL-------WQKDVPNPPA 80
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N + +T SL ++ RN+ +VG+TGS GK+TTK M+A L S V ++
Sbjct: 81 NVPLLIVEDTEKSLQELSKSYRNA-LRAKVVGITGSNGKTTTKDMVASVL-SEKFKVQKT 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN GV L+L+ +D +IAV+EMGMS KGEI L +ARP++ ++ N+G++H+++
Sbjct: 139 EGNFNNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQN 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDV 279
LGS E +A AK EI + + + D+PL V N+T G+R FG G D+
Sbjct: 199 LGSREAIADAKLEITEGLPENGLLIYMGDEPLLQERVPNIT---GIRTKTFGKGHGNDL 254
>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
-d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
-d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
Length = 503
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 133/267 (49%), Gaps = 12/267 (4%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
N +W ++ +A +++ + L P I I DTR L FFAI G FD H+F++
Sbjct: 2 NEALWDVDAMAAAMHARPLGDLPAAISGISIDTRTL--EAGDAFFAIQGDRFDGHDFLTA 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ Q G VQ + L ++ +A AR +R +V VTGS
Sbjct: 60 ATKAGAALHVVSEQKLPAL--GRVQSPLLIVDDVLKAMSRLAEAAR-ARSKATIVAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L + G V S ++NN GV LSL + R A+ E+GM+ GEI
Sbjct: 117 VGKTTTKEALRHGLAAEG-KVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL---V 257
L ++ RP + ++ + +HL L+++A AK EIF+ +LNADDP +
Sbjct: 176 RPLVKLVRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPL 235
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVA 283
A + GV ++ FG G D RL++
Sbjct: 236 ATMARKAGVTEIRTFGESAGADFRLLS 262
>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1273]
gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1272]
gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1272]
gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1273]
Length = 458
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 24/262 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V V W KG N V +TL++L +A R+ + +VGVTG
Sbjct: 60 -----AVESGAVATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRD-QLDVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 -RVPEMNLAAETVTFGDARAND 253
>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B1 str. Okra]
gi|429247505|ref|ZP_19210748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum CFSAN001628]
gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B1 str. Okra]
gi|428755459|gb|EKX78087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum CFSAN001628]
Length = 462
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 147/263 (55%), Gaps = 27/263 (10%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE N +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKASYIIKVE-----NANKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVGAVL-AEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRL 281
N + F ++ G D +
Sbjct: 234 NFESDK-----FKVYKIGTDKKF 251
>gi|423393317|ref|ZP_17370543.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-3]
gi|401630236|gb|EJS48043.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-3]
Length = 458
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 24/262 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V V W KG N V +TL++L +A R+ + +VGVTG
Sbjct: 60 -----AVESGAVATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRD-QLDVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 -RVPEMDLAAETVTFGDARAND 253
>gi|423421600|ref|ZP_17398689.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-1]
gi|401097262|gb|EJQ05290.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-1]
Length = 458
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 24/262 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V V W KG N V +TL++L +A R+ + +VGVTG
Sbjct: 60 -----AVESGAVATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRD-QLDVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 -RVPEMNLAAETVTFGDARAND 253
>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
olearia TBF 19.5.1]
gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
olearia TBF 19.5.1]
Length = 468
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 18/254 (7%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
PI ++++I E+ G +L G P + I TDTR + +K F A+ G+ FD H FI
Sbjct: 2 EPI-SLSKIIEATGGTLLS-GTPDVEIFGISTDTRTI--HKGDLFVALEGERFDGHYFID 57
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
E + KG +G I ++ + + ++V +TL +L ++A R F ++ VTG
Sbjct: 58 -EAFKKGAIGAIVSREVESKNI-IIKVR-----DTLKTLGDIAKIYR-EEFDIPVIAVTG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+ L + ++ G++NN VGV L+L+ +DR +AVLEM + G
Sbjct: 110 SNGKTTTKEMLGYIL-TREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGG 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A+P + VV N+GD+HL+ L + E V + K E+ + V VLNADDP V
Sbjct: 169 IKRLCEIAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLK 228
Query: 260 LT-VPRGVRKVFFG 272
+ + R R V FG
Sbjct: 229 MKEISRTKRIVTFG 242
>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
Length = 452
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 12/251 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+T++++ E+ G + TDTR + F A+ G FD H+FI+ +
Sbjct: 4 FTLSQVVEATQGTSAHTDNIKFLDVSTDTRTI--ESGFLFVALKGDAFDGHDFINTAIE- 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG G I + G V +E + NTL + N+A Y R RF +V +TGS GK+
Sbjct: 61 KGATGAIVEK--GRAVDGIVCIEVD---NTLVAYQNLARYHRR-RFDIPVVAITGSSGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+A L + NV ++ N+NN +G+ +L+ + V+EMGM G G+I ELA
Sbjct: 115 TTKEMVAAVLGT-EFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELA 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P + ++ NVG SH+E LGS E +A+AKGE+ + V +LN DDP V +
Sbjct: 174 LIAEPTMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAMDSLA 233
Query: 265 GVRKVFFGWRR 275
+ + +G R
Sbjct: 234 KGKTITYGIER 244
>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas flueggei ATCC 43531]
gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas flueggei ATCC 43531]
Length = 468
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 145/289 (50%), Gaps = 24/289 (8%)
Query: 28 TINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +EI + + + + G G I TDTR + F A+ G++FD F + E
Sbjct: 6 TWDEICAATDASVRRGGVAGDTVLPITTDTRKV--EAGDLFVALRGENFDGTAF-AAEAL 62
Query: 84 GKGCVGVIGNQ--------VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
+G V+ +Q N G + E +TL + ++A +A +F+ +V
Sbjct: 63 ERGAAAVLVDQKTPASVLAALNAAHGGVLVAE-----DTLRAYQDIA-HAWRMKFNIPVV 116
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGS GK+TTK + A L G V ++ N+NN VG+ L+L+ I AV+E+GM
Sbjct: 117 AITGSNGKTTTKDLTAAVLSGRG-KVCRTAANYNNEVGLPLTLLSITPEDTAAVVEIGMR 175
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
G G+I LA +A P I +V NV + H+E LGS+E++A+AK E+ G +LNADDP
Sbjct: 176 GMGQIAALAPIAEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDP 235
Query: 256 LVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
VA + + GVR + +G DVR A Q G V ER
Sbjct: 236 RVAGMRSSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERH 284
>gi|409991966|ref|ZP_11275185.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Arthrospira platensis str. Paraca]
gi|409937160|gb|EKN78605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Arthrospira platensis str. Paraca]
Length = 468
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 10/207 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGFVQVE 107
I TDTR L + + F A+ G FD H+F++ + V+ + ++ + + V
Sbjct: 33 ITTDTRNL--QRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVSHPEFPLIPV- 89
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + +A R+ RF ++GVTGSVGK+TTK +I+ L G V +++GN
Sbjct: 90 ----ADTLQAYQTLARSWRD-RFPIPVIGVTGSVGKTTTKELISAVLSHHG-KVHKTFGN 143
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+ + D AV+EM M G GEI +L R+ RP + V++NVG +H+ LGS
Sbjct: 144 YNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIADLTRITRPTVGVIVNVGTAHIGRLGS 203
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADD 254
+ +ARAK E+ E + VLN D+
Sbjct: 204 EDAIARAKCELLAEMPDTSIAVLNHDN 230
>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Arthrospira platensis NIES-39]
Length = 468
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 10/207 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGFVQVE 107
I TDTR L + + F A+ G FD H+F++ + V+ + ++ + + V
Sbjct: 33 ITTDTRNL--QRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVSHPEFPLIPV- 89
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + +A R+ RF ++GVTGSVGK+TTK +I+ L G V +++GN
Sbjct: 90 ----ADTLQAYQTLARSWRD-RFPIPVIGVTGSVGKTTTKELISAVLSHHG-KVHKTFGN 143
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+ + D AV+EM M G GEI +L R+ RP + V++NVG +H+ LGS
Sbjct: 144 YNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIADLTRITRPTVGVIVNVGTAHIGRLGS 203
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADD 254
+ +ARAK E+ E + VLN D+
Sbjct: 204 EDAIARAKCELLAEMPDTSIAVLNHDN 230
>gi|347526974|ref|YP_004833721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Sphingobium sp. SYK-6]
gi|345135655|dbj|BAK65264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Sphingobium sp. SYK-6]
Length = 461
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 134/283 (47%), Gaps = 17/283 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+P+WT IAE+ G + D+R +AP F A+ G+H D H+FI L
Sbjct: 2 TPLWTSEAIAEATGGTANSSFDVTGVAFDSREVAPG--DLFVALRGEHADGHDFIPMALA 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ +V FV+V + L ++ +R R ++GVTGS GK
Sbjct: 60 AGAGGLLVEREVNGP----FVKV-----ADAARGLEDLGRASRR-RTGARIIGVTGSAGK 109
Query: 144 STTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
+ TK + A + + +S ++NN VGV LSL + V EMGM+ +GE+
Sbjct: 110 TGTKEALYRAFDRMSFGGAHRSLKSYNNHVGVPLSLARMPATTRYGVFEMGMNHEGELRA 169
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---N 259
L+RM RP + +V + +H+E GS E +A AK EIF+ ++ AD P + N
Sbjct: 170 LSRMVRPHVAIVTTIAPAHIEYFGSEEKIADAKAEIFEGLTSDGTAIIPADSPHASRLYN 229
Query: 260 LTVPRGVRKVFFGWRRGCDVRLV-AAQVANGGLGVQVVLEKER 301
+ R V FG R G DVR+V A A GG V L R
Sbjct: 230 VAARHAARIVTFGLRAGADVRVVEEAPSARGGTLVTAQLRTAR 272
>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
gi|336431478|ref|ZP_08611327.1| hypothetical protein HMPREF0991_00446 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795608|gb|EDN78028.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus gnavus ATCC 29149]
gi|336013780|gb|EGN43652.1| hypothetical protein HMPREF0991_00446 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 456
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 10/232 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G D H FI P+ G + + + N ++ V + +L
Sbjct: 40 KDCLFIAIRGARVDGHMFI-PQTIRDGALCALSEKRIENASYPYILV-----TSCEQALK 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A + R S + +VGVTGSVGK++TK MIA L NV ++ GN+NN +G+ L++
Sbjct: 94 DIAEHYRKS-LNLKVVGVTGSVGKTSTKEMIASVLGE-KYNVLKTAGNFNNEIGLPLTIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
I ++AVLE+G+S GE+ LA++ARP+I V+ N+G +HLE L S + + +AK EIF
Sbjct: 152 NIREEHEVAVLELGISNFGEMERLAKIARPDICVITNIGVAHLEHLKSRDGILKAKTEIF 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
+LN DD ++ + G++ VFFG D A QV + GL
Sbjct: 212 LYMNPNGSIILNGDDDKLSTVHPANGIQPVFFGLDDSRD--FYADQVESCGL 261
>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[delta proteobacterium NaphS2]
gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[delta proteobacterium NaphS2]
Length = 476
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 141/270 (52%), Gaps = 21/270 (7%)
Query: 24 SPIW---TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEF 77
+P W + EI ++V+G +L P +D+R + P F+A+ G+ FD H+F
Sbjct: 2 APRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPG--DLFWALKGERFDGHDF 59
Query: 78 ISPELYGKGCVGVIGNQ-----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG 132
+ + +G GV+ + V N + + V+ NTL +L ++A + R + +
Sbjct: 60 VHQAVR-EGASGVVVQREYTISVENRPEIAVIAVD-----NTLRALGDLAAWWRR-QHTA 112
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
L +TGS GK+T K M A LE + ++ GN NN +G+ ++L+ +D + AV+EM
Sbjct: 113 KLAAITGSSGKTTAKEMTAAILE-MENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEM 171
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ KGEI L +A P+ +LNVG +HLE LG ++ VA AK E+ + +LN
Sbjct: 172 GMNHKGEIARLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNG 231
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282
DD ++ + V FG ++G + V
Sbjct: 232 DDAVLMKHATKFDRKFVTFGMKKGNHIHAV 261
>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii SL3/3]
Length = 460
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 9/234 (3%)
Query: 38 GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN 97
GK+ ++ TD+R + P F A G+ FD H+F + L +G V V N
Sbjct: 17 GKLTSDPEVALVTTDSREVKPG--CIFVAFPGERFDGHDFAARALE-QGAEYV----VVN 69
Query: 98 NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
+ G + + ++ ++++ M R S++ +VGVTGSVGK+TTK M AL
Sbjct: 70 HPVPGVPEEKAILCPDSYHAMMVMGANYR-SQYHPKMVGVTGSVGKTTTKQMTYAALSGF 128
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G + ++ GN NN +G+ +L+ ++ + + AV+EMGMS GEI LAR ARP++ ++ +
Sbjct: 129 GETI-KTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCI 187
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
G SH+ +LGS E++ +AK EI G VLN DDP + +P VR V+F
Sbjct: 188 GVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAHVRPVWF 241
>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
novyi NT]
gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
novyi NT]
Length = 457
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 144/264 (54%), Gaps = 23/264 (8%)
Query: 25 PIWTINEIAESVNGKI-LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ EI ++V GK+ + G I TDTR + K+ F A+ G +F+A+++I
Sbjct: 2 ELLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKIT--KDSIFVALKGDNFNANDYIVD- 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVLV 135
V G+ +C + F + N N NT +L+++A R S+ ++
Sbjct: 59 ------ASVKGSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYR-SKLDIKVI 111
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGS GK++TK + A AL S VF++ GN+NN VG+ L + +D + D+AVLEMGMS
Sbjct: 112 GITGSTGKTSTKDLTAAALSS-KYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMS 170
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
EI LA++A+P+I ++ N+G SH+E+L + E++ +AK EI V ++N ++
Sbjct: 171 NFDEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKEND 230
Query: 256 LVANLTVPRGVRKVF-FGWRRGCD 278
L+ TV K+ G+ + D
Sbjct: 231 LLK--TVKSNDYKLMSIGFEKDVD 252
>gi|402303446|ref|ZP_10822541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC9]
gi|400378690|gb|EJP31542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC9]
Length = 468
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G+ FD +F + L ++ V + K ++ G
Sbjct: 31 ITTDTRKV--QAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMSG 88
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
G +TL + +A +A +F +V VTGS GK+TTK + A AL G V ++
Sbjct: 89 AVIGVPDTLAAYQQIA-HAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGA-VCRTAA 146
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+L+G+ AV+EMGM G+G+I LA +A P + +V NVG++H+E LG
Sbjct: 147 NYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIVTNVGETHMELLG 206
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAA 284
S+E++ARAK E+ + G +LNADD VA + GVR + +G R D+R A
Sbjct: 207 SIENIARAKSELVEAIAPGGTVILNADDARVAAMRAQAADGVRILTYGIRAKADIRAQAL 266
Query: 285 QVA 287
+ A
Sbjct: 267 RSA 269
>gi|334341862|ref|YP_004546842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum ruminis DSM 2154]
gi|334093216|gb|AEG61556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum ruminis DSM 2154]
Length = 462
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 15/242 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T+ EIA + G +L+ P ++ CTD+R F A+ GQ D H FI L
Sbjct: 3 VYTVKEIAGATGGILLQGDPSAVVRGVCTDSR--KAGSGDLFAALKGQQMDGHLFIGQAL 60
Query: 83 YGKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG ++ ++V + +G VQV+ +TL +L +A Y R + + +V VTGS
Sbjct: 61 E-KGAGALLVSRVPDVVPEGVPVVQVQ-----DTLQALQQLARYNR-EQLNIPVVAVTGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK M+A L+ + N ++ GN+NN +G+ L+L+ + AV+EMGM G GEI
Sbjct: 114 NGKTSTKDMVAAVLQ-VRWNTLKTQGNFNNELGLPLTLLNLTEKHQAAVVEMGMRGPGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A+P V+ N+G++HLE LGS+ ++A AKGE+ + +LN D P V L
Sbjct: 173 DFLAGLAKPTGAVITNIGETHLERLGSVHNIALAKGEVLEHIPQDGFALLNGDSPYVNEL 232
Query: 261 TV 262
V
Sbjct: 233 AV 234
>gi|428304793|ref|YP_007141618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Crinalium epipsammum PCC 9333]
gi|428246328|gb|AFZ12108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Crinalium epipsammum PCC 9333]
Length = 449
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 18/215 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN------QVCNNWDKG 102
I TDTR L + F A+ G++FD H F+ + KG + VI + ++ N +
Sbjct: 33 INTDTRSL--KAGEVFVALQGENFDGHNFVDLAIE-KGAIAVITHRRITDGKITENIPQL 89
Query: 103 FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
V+ NTL + +A + RN +FS ++ VTGSVGK+TTK +IA L + G V
Sbjct: 90 VVE-------NTLKAYQAIAHWWRN-QFSIPVIAVTGSVGKTTTKELIAAILSTKG-KVL 140
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ N+NN +GV +L+ + + AV+EM M G GEI ELA++A P + V+ NVG +H+
Sbjct: 141 KTQANYNNEIGVPKTLLELSSEHNYAVIEMAMRGPGEIAELAQIANPTLGVITNVGTAHI 200
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK E+ E + VLN D+ L+
Sbjct: 201 GRLGSEEAIAKAKCELLAEMSESAIAVLNQDNQLL 235
>gi|336115444|ref|YP_004570211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 2-6]
gi|335368874|gb|AEH54825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 2-6]
Length = 458
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 23/239 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+C D+R + K + +TG+H D H+++ + + +G + W K
Sbjct: 31 VCIDSRKI--EKGNLYVPLTGRHADGHQYVE-DAFRRGAAASL-------WQKDVPNPPA 80
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ + +T SL +A RN+ +VG+TGS GK+TTK M+A L S V ++
Sbjct: 81 HVPLLIVEDTEKSLQELAKSYRNA-LRAKVVGITGSNGKTTTKDMVASVL-SEKFKVQKT 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN GV L+L+ +D +IAV+EMGMS KGEI L +ARP++ ++ N+G++H+++
Sbjct: 139 EGNFNNHQGVPLTLLSLDENTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQN 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDV 279
LGS E +A AK EI + + + D+PL V N+T G+R FG G D+
Sbjct: 199 LGSREAIADAKLEITEGLPENGLLIYMGDEPLLQERVPNIT---GIRTKTFGKGHGNDL 254
>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
10507]
gi|225037123|gb|EEG47369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
hydrogenotrophica DSM 10507]
Length = 458
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 141/270 (52%), Gaps = 17/270 (6%)
Query: 27 WTINEIAESVNG-----KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ IA NG + +W I +D+R AP F I G+ D H FI P
Sbjct: 4 LTLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPG--CLFVPIVGERVDGHSFI-PN 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ G + + + ++QV ++L ++ ++A + + +VG+TGSV
Sbjct: 61 VMEAGALATLSQKELPEARFPYIQV-----ASSLQAVKDIAKFYLE-QLKIPVVGITGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK +IA L+ ++ ++ GN+NN +G+ L++ + +IAVLEMG+S GE+
Sbjct: 115 GKTSTKEVIASVLKE-KYHILKTQGNFNNELGLPLTVFRLRDYHEIAVLEMGISDFGEMS 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA +ARP+ V+ N+G HLE LG + V +AK E+F+ K G +LN DD +A +
Sbjct: 174 RLADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKEGGRAILNGDDDKLATIR 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
+G +FFG V A Q+ + GL
Sbjct: 234 QVQGKEPIFFGMNPAFPV--YADQIQSRGL 261
>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Koribacter versatilis Ellin345]
gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Koribacter versatilis Ellin345]
Length = 458
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R + P + FFA+ G+ D H+++ L V+ + ++ + +
Sbjct: 30 DSRTIKPG--ELFFAVKGERLDGHDYVQAALDRGAVAAVVSREFPARFNGTRNLLVADDP 87
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
+ L+ L M S + +VGVTGS GK+TTK IA L S + V +S GN NN
Sbjct: 88 LLALHRLAEMV----RSLWHHPVVGVTGSAGKTTTKECIAHVLAS-KLKVLKSEGNLNNH 142
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
G+ L L+ ++ +IAV+EMGMS GEI LA++A+P VV NV HLE+ S+ +
Sbjct: 143 FGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLAQPNTGVVTNVAPVHLENFDSIAGI 202
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
ARAK E+ G VLNADD V+ + FG +R D R
Sbjct: 203 ARAKYELIAALPRGGCAVLNADDEFVSQFGRDFHGTVLMFGVKRAADFR 251
>gi|428300253|ref|YP_007138559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Calothrix sp. PCC 6303]
gi|428236797|gb|AFZ02587.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Calothrix sp. PCC 6303]
Length = 451
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 16/236 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TIN++ E ++ + + + TDTRI+ P + F A+ G+ FD H+F+
Sbjct: 6 TINQLIEVLDATSVNISDAALTHLCVGVQTDTRIVKPG--EVFLALRGEKFDGHDFVGMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ KG + I + N +QV+ ++L + +A + R+ RF+ +VG+TGSV
Sbjct: 64 I-AKGALTAIVDFDYQNPQFPVLQVK-----DSLKAYQKLARWWRD-RFTIPVVGITGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK +IA L + G V ++Y N+NN +GV +L+ + AV+EM M G+G+I
Sbjct: 117 GKTTTKEIIAAVLGTQG-RVHKTYANFNNEIGVPKTLLELGTEHHYAVIEMAMRGRGQIA 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
EL + P+I V+ NVG +H+E LGS +A AK E+ E V +LN D+ L+
Sbjct: 176 ELTEVVHPQIGVITNVGTAHIELLGSELAIAEAKCELLAEMPRDGVAILNHDNELL 231
>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor hydrothermalis 108]
gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor hydrothermalis 108]
Length = 448
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 148/273 (54%), Gaps = 13/273 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG++ + ++ + I + N K+ F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKAINGELRNFSSD-VLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + + +++V+ ++L +L ++ACYAR +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFEDIKVPYIKVQ-----DSLLALQSLACYARRKLNDLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L S F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P+I ++ N+G +H+E+L S ++ AK EI + ++N+D+ ++ NL
Sbjct: 174 SQIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
RKV G + R Q G +V
Sbjct: 233 ELKRKVVTIGIENESNFRAQNVQRHQNGFSFEV 265
>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Phascolarctobacterium succinatutens YIT 12067]
gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Phascolarctobacterium succinatutens YIT 12067]
Length = 454
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 13/235 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV--QV 106
+ TD+R + P + F A+ G +FD H++ + + G GV+ + + G V
Sbjct: 23 VTTDSRAVKPG--ELFVALKGDNFDGHDYCAKAVE-LGAAGVVVSHEVSGLPAGVAVFMV 79
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLV-GVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL + +A +A R G+ V +TGS GK++TK ++A L S NV ++
Sbjct: 80 E-----DTLLAYQQLA-HAYRLRKQGLKVFAITGSNGKTSTKDLLAACL-SCKYNVVKTQ 132
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ +L+ I DIAV+EMGM G G+I EL R+A P+ ++ NVG++H+E L
Sbjct: 133 GNFNNEIGLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIAEPDSGLITNVGETHMELL 192
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
GS+E++ +AK EI VLN D+ V + V+FG CD R
Sbjct: 193 GSMENIGKAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKAKVVYFGLGENCDFR 247
>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-63q42]
gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile ATCC 43255]
Length = 457
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 145/283 (51%), Gaps = 16/283 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
K+ FG+ + DV + + L V+ ++E
Sbjct: 235 KEKEHAYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE 277
>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 445
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 113/218 (51%), Gaps = 24/218 (11%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P ICTD+R L P F A+ G+ FD H FI P+ +G V VI +
Sbjct: 25 PVQAICTDSRQLQPGSV--FVALRGERFDGHNFI-PQALARGAVAVISQRPVAG---PHF 78
Query: 105 QVEGNGNVNTLNSLVNMACYARNSR-----FSGVLVGVTGSVGKSTTKSMIALALESLGV 159
QV +A Y R +R F +V +TGS GK+TTK M+A AL G
Sbjct: 79 QVSDT-----------LAAYQRIARGWREQFPPSVVAITGSAGKTTTKEMLAAALSRYG- 126
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V +S N NN +GVA +L+ + VLEM M G GEI LA+MA+P ++ ++G
Sbjct: 127 TVLKSEANHNNDIGVAQTLLQMRPEHQFVVLEMAMRGPGEIRRLAQMAQPTHALITHIGT 186
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+H+ LGS +A AK E+ QE G V +LN +DPL+
Sbjct: 187 AHIGRLGSRAAIAAAKCELLQELGQG-VALLNGEDPLL 223
>gi|336420660|ref|ZP_08600822.1| hypothetical protein HMPREF0993_00199 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336005892|gb|EGN35935.1| hypothetical protein HMPREF0993_00199 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 457
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 133/231 (57%), Gaps = 10/231 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + K+ F AI G++ +AH+FI P+ KG + VI ++ + D ++ V
Sbjct: 29 GGVVIDSRKV--QKDYLFVAIDGENVNAHQFI-PDTIEKGALCVISHEDLGDTDFSYILV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E G +L+++A R+S F +VG+TGSVGK++TK MIA ++ + V ++ G
Sbjct: 86 ESTGQ-----ALLDIAKLYRDS-FDVKVVGITGSVGKTSTKEMIA-SVVAQKYKVHKTIG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN G+ L++ ++ +A+LEMG++ GE+ L+ +A P+I V+ N+G +HLE
Sbjct: 139 NFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFK 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
+ E + + K ++ Q+ K G + N DD L++ +G + FG C
Sbjct: 199 TREGILQEKSKMIQDMKDGGTIIFNGDDDLLSQAGPIKGATPILFGLGDNC 249
>gi|358067546|ref|ZP_09154024.1| hypothetical protein HMPREF9333_00905 [Johnsonella ignava ATCC
51276]
gi|356694199|gb|EHI55862.1| hypothetical protein HMPREF9333_00905 [Johnsonella ignava ATCC
51276]
Length = 469
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSL 118
N F I G DAH+FI+ ++Y +GC + + KG ++ VE NT+ +L
Sbjct: 53 NSLFIPIVGARNDAHDFIN-DVYERGCRLTLTQRKDIRLIKGMNYIYVE-----NTVKAL 106
Query: 119 VNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS 177
++A + +N + + L+G+TGSVGK+TTK M+ AL S VF++ N N+++GV L+
Sbjct: 107 QDIAKAHRKNLKLT--LIGITGSVGKTTTKEMLWYALSS-AKKVFKTPANHNSQIGVPLT 163
Query: 178 LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237
L+ ID + DI V+E+G+S GE+ ++A + P+ ++ N+G++H+ +L S E + K +
Sbjct: 164 LLEIDESYDIGVIELGISEPGEMEKIASLVMPDSAIITNIGNTHILALKSKEGIRDEKFK 223
Query: 238 IFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
I G V LNAD ++ V +G++K ++ R+ C
Sbjct: 224 IMVGMAEGSVIFLNADSDILKKSDVYKGIKKEYYSGRKKC 263
>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Coleofasciculus chthonoplastes PCC 7420]
gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Coleofasciculus chthonoplastes PCC 7420]
Length = 466
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 22/213 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
I TDTR L P Q F A+ G+ FD H++ + KG + VI N+ D+G+
Sbjct: 33 ITTDTRNLEPG--QIFLALRGETFDGHDYAEVAI-KKGAIAVIANR-----DQGYHLQDI 84
Query: 104 --VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+QV+ +TL + +A + R+ +F ++ VTGS GK+TTK +IA L + G N+
Sbjct: 85 PQLQVD-----DTLQAYQQLARWWRD-QFDIPVIAVTGSAGKTTTKELIAAVLSTQG-NI 137
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
++ N+NN +GV +L+ +D D AV+EM M G G+I L ++ARP I V+ NVG +H
Sbjct: 138 LKTQANYNNEIGVPKTLLELDSNHDYAVIEMAMRGSGQIALLTQIARPTIGVITNVGTAH 197
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ LGS + +A+AK E+ + + +LN D+
Sbjct: 198 IGLLGSEDAIAKAKCELLAQMPDTSMAILNHDN 230
>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
sp. PCC 8106]
gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
sp. PCC 8106]
Length = 467
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 115/210 (54%), Gaps = 18/210 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L P + F A+ G+ FD H F+ + +G V C D F
Sbjct: 33 ITTDTRTLQPG--EAFLALRGERFDGHHFVE-QAIAQGAV-------CAIVDADFTA--D 80
Query: 109 NGNVNTLNSLVNMACYARNSR-----FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
N N+ L ++A Y +R F+ ++GVTGSVGK+TTK +IA L + G NV +
Sbjct: 81 NPNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTKELIAAVLGTQG-NVHK 139
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ N+NN +GV +L+ ++ + AV+EM M +GEI L ++ARP I ++ NVG +H+
Sbjct: 140 TQANYNNEIGVPKTLLQLNSHHNYAVIEMAMRARGEIALLTQIARPTIGLITNVGTAHIG 199
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
LGS + +A AK E+ E V VLN D
Sbjct: 200 RLGSEQAIAEAKCELLAEMPQNSVAVLNCD 229
>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
gi|167661645|gb|EDS05775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium scindens ATCC 35704]
Length = 457
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 133/231 (57%), Gaps = 10/231 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + K+ F AI G++ +AH+FI P+ KG + VI ++ + D ++ V
Sbjct: 29 GGVVIDSRKV--QKDYLFVAIDGENVNAHQFI-PDTIEKGALCVISHEDLGDTDFSYILV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E G +L+++A R+S F +VG+TGSVGK++TK MIA ++ + V ++ G
Sbjct: 86 ESTGQ-----ALLDIAKLYRDS-FDVKVVGITGSVGKTSTKEMIA-SVVAQKYKVHKTIG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN G+ L++ ++ +A+LEMG++ GE+ L+ +A P+I V+ N+G +HLE
Sbjct: 139 NFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFK 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
+ E + + K ++ Q+ K G + N DD L++ +G + FG C
Sbjct: 199 TREGILQEKSKMIQDMKDGGTIIFNGDDDLLSQAGPIKGATPILFGLGDNC 249
>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
Kuenenia stuttgartiensis]
Length = 484
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELYGK 85
++ E+ ++VNGK + G++ + + N K FFAI G H+D +FI + +
Sbjct: 7 SLEEVIQAVNGKAIS-NVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIE-QAFDA 64
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGN-------GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G +GV+ ++ +G + + G +V T +L ++A + R + + ++G+T
Sbjct: 65 GAIGVVVSK------QGGIDISGKCLPLILVDDVKT--ALGDLARHYRR-KLNAKIIGIT 115
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+ L V + ++NN +GV L++ I+ +LEMG + G
Sbjct: 116 GSNGKTTTKEMLYHLLSHF-APVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPG 174
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EIL L+ + P+I V+LN+ +HLE LGS+E VA KG+I + K V V NAD+PL
Sbjct: 175 EILRLSEIGLPDIAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNPLCC 234
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ G K+ FG + +R A+ G
Sbjct: 235 EIADKFGGNKISFGLGQNAQIRGTDAKKKGNG 266
>gi|434398968|ref|YP_007132972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Stanieria cyanosphaera PCC 7437]
gi|428270065|gb|AFZ36006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Stanieria cyanosphaera PCC 7437]
Length = 448
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 121/212 (57%), Gaps = 15/212 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ---VCNNWDKGFVQ 105
I TDTR L P + F A++G++FD H F S + KG + +I ++ + + + V
Sbjct: 30 ITTDTRNLKPG--EIFVALSGENFDGHNFASVAVE-KGAIALILSRALSLVTDTPQLIVS 86
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL + +A + RN F ++G+TGSVGK+TTK +IA L + G V ++
Sbjct: 87 -------DTLVAYQQIANWWRNC-FDIPVIGITGSVGKTTTKELIAAVLNTQG-KVLKTE 137
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +GV +L+ + D AV+EM M GEI L + RP I V+ NVG +H+ L
Sbjct: 138 ANYNNEIGVPKTLLELRSGHDYAVIEMAMRATGEIALLTNLTRPTIGVITNVGTAHIGRL 197
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +ARAK E+ + L V +LN D+PL+
Sbjct: 198 GSKEAIARAKCELLAQMPLSSVAILNHDNPLL 229
>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus W]
gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus W]
gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 458
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A + R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKHYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|334120719|ref|ZP_08494797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Microcoleus
vaginatus FGP-2]
gi|333455991|gb|EGK84629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Microcoleus
vaginatus FGP-2]
Length = 460
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 122/212 (57%), Gaps = 9/212 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G +FD H+F++ +G I V +W +
Sbjct: 33 IATDTRTL--EGGEIFLALRGDNFDGHQFVAK----ARDLGAIAAIVDRDWQEELPNFPL 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + ++A + R+ +FS +V VTGSVGK+T K +IA L + G NV ++ N+
Sbjct: 87 LRVDDTLKAYQSIARWWRD-QFSIPIVAVTGSVGKTTVKELIAAVLSTRG-NVLKTQYNY 144
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + A + AV+EMGM G GEI L+++ARP + V+ NVG +H+ LGS
Sbjct: 145 NNEIGVPKTLLELSSAHNYAVIEMGMRGSGEIALLSQIARPTVAVITNVGTAHIGRLGSE 204
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD-DPLVAN 259
+ +A+AK E+ E + +LN D D L+A
Sbjct: 205 DAIAQAKCELLAEMPTDSIAILNHDGDRLIAT 236
>gi|423525844|ref|ZP_17502296.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA4-10]
gi|401165635|gb|EJQ72952.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA4-10]
Length = 458
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPANLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++A L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVASILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLAAETVTFGDARAND 253
>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Verrucomicrobium spinosum DSM 4136]
Length = 460
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 142/255 (55%), Gaps = 16/255 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IA G+++ G P + CT D+R + P + F A+ G+ FDAH+F+ P++
Sbjct: 5 TLETIASYSGGRLVH-GDPAVTCTSVNTDSRKIQPG--ELFVALVGEKFDAHDFV-PQVA 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSV 141
G VI +++ N V+ G G + ++L+ + AR R + +++G+TGS
Sbjct: 61 QAGAAAVIVSRLPEN-----VEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A L V + GN+NN +G+ L+++ ++ + AVLEMGM+ GEI
Sbjct: 116 GKTSTKDLVAAVLRK-KYQVCATLGNFNNHIGLPLTILRMEEGDNCAVLEMGMNHHGEIA 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA +ARP+ ++ N+G +H+E +GS E +A+ KG + G V VLNA+D +++
Sbjct: 175 VLAGIARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAAVPHGGVVVLNANDDFSSSIA 234
Query: 262 VPRGVRKVFFGWRRG 276
R V G G
Sbjct: 235 ARSHARVVLAGVGEG 249
>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
selenitireducens MLS10]
gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
selenitireducens MLS10]
Length = 456
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 12/228 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+CTDTR + P F I G+ F+ H+F+ + +G + + D + V
Sbjct: 30 VCTDTRNILPGS--LFIPIVGERFNGHDFVK-QAIDRGAKAALWSTKEADAPEDLPLIFV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +T+ +L +A + + ++ VTGS GK+TTK M+A E+L V ++ G
Sbjct: 87 E-----DTIEALQQLAKHYLRT-IGAKVIAVTGSNGKTTTKDMMAAVCETLW-KVQKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ + + + +LEMGMSG GEI L+++A P+ ++ N+G+SHL+ LG
Sbjct: 140 NFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEPDAAIITNIGESHLQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
S E++A+AK EI + K G V + D+PL+ LT + FG R
Sbjct: 200 SRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQSPHPLLTFGHR 247
>gi|423614481|ref|ZP_17590338.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD107]
gi|401237930|gb|EJR44376.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD107]
Length = 458
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITMQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVANPPANLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP+ ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPDAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLAAETVTFGDARAND 253
>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
sp. wRi]
gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
sp. wRi]
Length = 509
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 133/264 (50%), Gaps = 22/264 (8%)
Query: 27 WTINEIAESVNGKILK---WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W N I ++ G+ + W I TDTR + K F A+ G++FD H F+ E +
Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIK--KGDLFIALKGKNFDGHNFLH-EAF 60
Query: 84 GKGCVGVIGNQVCNNWDKGF----VQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVT 138
KG V I V K F VQ +TL +L +MA Y RN ++ VT
Sbjct: 61 LKGAVAAI---VSEGKYKSFPLMIVQ-------DTLKALHDMASYYIRNVLIDAKVIAVT 110
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK M+ L GV+ S GN NN +G+ L+++ + +LEMGM+ G
Sbjct: 111 GSVGKTTTKDMLHTVLSQYGVS-HASEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKVG 169
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI EL++++ P I V+ N+ +H E+ SL DVA+AK EI K VL+ D+
Sbjct: 170 EIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYD 229
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLV 282
L+ + FG + +V L+
Sbjct: 230 YLSSHANRNVISFGKDKNAEVCLL 253
>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
Length = 459
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 10/230 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + K+ F I G D H FI P++ KG + + V N ++ V+
Sbjct: 31 VAIDSRKI--EKDWLFIPIKGARVDGHSFI-PQVMEKGALCTLSEVVLENVSHPYILVD- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L ++A + R + +VG+TGSVGK++TK MIA LE +V ++ GN+
Sbjct: 87 ----SCEQALKDIAEHYRKA-LDIKVVGITGSVGKTSTKEMIASVLEQ-KYHVLKTAGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ I +IAVLEMG++ GE+ LA+MARP+I V+ N+G HLE+L
Sbjct: 141 NNEIGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMARPDICVITNIGLCHLENLIDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+ + +AK E+F + +LN DD + +T +G +FFG D
Sbjct: 201 DGILKAKTEMFDFMQPDAKIILNGDDDKLITVTDVKGQTPMFFGLSTELD 250
>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Thermosynechococcus elongatus BP-1]
gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Thermosynechococcus elongatus BP-1]
Length = 456
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 11/209 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
ICTD+R +A F A+ G+ FD H+F+ ++ + ++ + +QV
Sbjct: 35 ICTDSRQIA--AGNLFVALRGETFDGHQFVDQAAAAGAIALMVEAPLSSDLPQ--LQV-- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL++ + + R + V + VTGSVGK+TTK MIA L G V ++ N+
Sbjct: 89 ---ANTLSAYQRLGQWWRQQCPAKV-IAVTGSVGKTTTKEMIAAVLSHYGA-VLKTEANF 143
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ AV+EMGM +GEI L+++A+P++ V+ NVG +H+ LGS
Sbjct: 144 NNEIGVPKTLLQLEPHHQFAVIEMGMRARGEIALLSQIAQPDVAVITNVGTAHIGRLGSR 203
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ E G VLNAD PL+
Sbjct: 204 EAIAQAKCELLAEMPPGGTAVLNADSPLL 232
>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Trichodesmium erythraeum IMS101]
gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Trichodesmium erythraeum IMS101]
Length = 468
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 16/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGF---- 103
I TDTR L P + F A+ G +FD H F+ + G CV V N+ +
Sbjct: 33 INTDTRNLQPG--EGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSNNI 90
Query: 104 --VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+QVE NTL + +A + R+ RF ++ VTGSVGK+TTK +IA L + G V
Sbjct: 91 PILQVE-----NTLKAYQKIARWWRD-RFDIPVISVTGSVGKTTTKELIAEVLATQG-KV 143
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
++ N+NN +GVA +L+ + + AV+EM M G GEI EL +A P I ++ NVG +H
Sbjct: 144 MKTEANYNNEIGVAKTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLITNVGTAH 203
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ LGS+E +A AK E+ +E + +LN D+
Sbjct: 204 IGRLGSVEAIAEAKCELLREMSDSSIAILNYDN 236
>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas artemidis F0399]
gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas artemidis F0399]
Length = 468
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 143/269 (53%), Gaps = 13/269 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T +EI + G++L G I TDTR + F A+ G+ FD +F + L
Sbjct: 5 TWDEIRAATGGRLLLGKMRGTDAFAGITTDTRKV--QAGDLFVALRGEKFDGADFAAGAL 62
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
++ V + K ++ G G +TL + +A +A +F +V VTGS
Sbjct: 63 RAGAVAVMLPEPVSDAHRKELDRMSGAVIGVRDTLAAYQQIA-HAWRMKFDIPVVAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK + A AL G V ++ N+NN +G+ L+L+G+ AV+EMGM G+G+I
Sbjct: 122 NGKTTTKELTAAALSGRGA-VCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P + +V NVG++H+E LGS+E++ARAK E+ G + +LNADD V +
Sbjct: 181 AALAAIAAPTVGIVTNVGETHMELLGSIENIARAKAELVAAIAPGGIVILNADDARVVAM 240
Query: 261 --TVPRGVRKVFFGWRRGCDVRLVAAQVA 287
GVR + +G R D+R A + A
Sbjct: 241 RAQAADGVRILTYGIRAEADIRAQALRSA 269
>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
gi|224953884|gb|EEG35093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium hallii DSM 3353]
Length = 490
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 141/271 (52%), Gaps = 22/271 (8%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI +I E+ +G++L +I D+R + +++ F I G+ DAH+FI
Sbjct: 28 TIKDIVEACSGQLLCGDENKVIKEFSIDSR--SGSEDSIFVPIIGERVDAHKFID----- 80
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGN------VNTLNSLVNMACYARNSRFSGVLVGVT 138
G + + G + D+ +EG N +T+ ++ + + RN R + +V VT
Sbjct: 81 -GALKINGATFTSEHDE---PLEGFENKPWIKVADTVEAMQKVGTFYRN-RMNLPVVAVT 135
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TT+ MI+ L S VFQ+ GN N+++GV L+L + R +IAVLE+GMS +G
Sbjct: 136 GSVGKTTTREMISTVLASQK-KVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERG 194
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I +L M RP + VV +G SH+ L + E++ K +I + + LN DD +A
Sbjct: 195 QIEKLTNMIRPNVAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLA 254
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+ F+G + CD R V +G
Sbjct: 255 PYRGKLSHKTFFYGMDKACDYRAENVHVKDG 285
>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium extorquens PA1]
gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium extorquens PA1]
Length = 487
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 15/266 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFIS 79
++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 3 DAPLWTPAALEAATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFVR 58
Query: 80 PELYGKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
L V+ ++ + V G G+ L+++ + AR +R ++ V
Sbjct: 59 AALDKGAGAAVVAEVRAKEFEGVGPVLAVPGEGDDPVLDAMRRLGLAAR-ARTGAAIIAV 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHG 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 177 AEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNY 236
Query: 256 --LVANLTVPRGVRKVFFGWRRGCDV 279
L+A+ R R + FG DV
Sbjct: 237 ERLLAHAQASRAGRVITFGEHEAADV 262
>gi|335420308|ref|ZP_08551346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Salinisphaera
shabanensis E1L3A]
gi|334894667|gb|EGM32852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Salinisphaera
shabanensis E1L3A]
Length = 460
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 20/240 (8%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
DTR L + FFA+ G D H+F++ +G G V D Q+
Sbjct: 29 DTRRL--ERGALFFALPGARVDGHDFVAR----AASLGAAGAVVARRVDSPLPQLV---- 78
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
V + + A A F+G ++GVTGS GK+T K M+A L G +V + GN NN
Sbjct: 79 VADVEQALQQAGAASRQAFNGTVIGVTGSNGKTTVKQMLAAILAEAG-SVLATEGNLNNH 137
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+GV ++L+ ++ +++ AV+EMG S GEI LA +ARP++ VV N G +H+E GS E V
Sbjct: 138 LGVPITLMRLNDSINRAVIEMGASHAGEIAMLAELARPQVGVVTNAGMAHIEGFGSREGV 197
Query: 232 ARAKGEIFQESKLGD--VCVLNADD---PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
A+AKGE+F S L D + V+N DD PL L R +++ F D + A+ +
Sbjct: 198 AKAKGEMF--SGLADDGIAVINGDDDFAPLWHELAGER--QRLVFARHARADADVFASDI 253
>gi|407776390|ref|ZP_11123663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor pacificus pht-3B]
gi|407301681|gb|EKF20800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor pacificus pht-3B]
Length = 474
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 12/269 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +W+ E+ ++ G+ L P GI I DTR L FFAI G+ FD H+F +
Sbjct: 2 SALWSFEELVQATGGRPLGQAPNGISGISIDTRTL--EAGDAFFAIQGEQFDGHDFATAA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V V+ G + V + L +L ++ AR +R ++ VTGSV
Sbjct: 60 MAAGASVLVVSEGKLPAL--GRLAVAKLVVPDVLKALEDLGRAAR-ARTKAKVIAVTGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ AL S+G V + ++NN GV L+L + D AV+E+GM+ EI
Sbjct: 117 GKTSTKEMMRQALSSVGA-VHAADRSFNNHWGVPLTLARMPADCDYAVIEIGMNHPDEIR 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L +M RP + +V V +HL ++E++ARAKGEIF+ G ++N DD +
Sbjct: 176 PLVKMTRPHVAIVTLVAAAHLGFFKTIEEIARAKGEIFEGVVKGGHALINRDDKRWKTLV 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQV 286
L GV+ V+ FG +VRL+ A++
Sbjct: 236 KLAEDAGVKHVWGFGENARAEVRLMHAEL 264
>gi|428770148|ref|YP_007161938.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobacterium aponinum PCC 10605]
gi|428684427|gb|AFZ53894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobacterium aponinum PCC 10605]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 140/256 (54%), Gaps = 19/256 (7%)
Query: 29 INEIAE----SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
I EI E S + +IL GI TDTR L + + F A+ G++F+ H+F+ +
Sbjct: 10 IREITEAKCSSFSSQILAENCLGI-STDTRTL--KRGEIFLALEGENFNGHDFLD-NAFE 65
Query: 85 KGCVGVIGNQVCNNW---DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG + I N+ +N + +QV+ NTL + +A + R + ++GVTGSV
Sbjct: 66 KGAIASIVNEKYSNLINKNSPILQVK-----NTLEAYQKIAQWWRQN-LGLPVIGVTGSV 119
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK +I+ L++ G V ++ N+NN +GV +L+ ID + AV+EM M GKG+I
Sbjct: 120 GKTTTKELISAVLKTQG-KVLKTEANYNNEIGVPKTLLQIDETDNYAVIEMAMRGKGQIA 178
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD-DPLVANL 260
L +A+P I V+ NVG +H+ LGS E +A AK E+ V ++N D D LVA
Sbjct: 179 LLTEIAQPNIGVITNVGTAHIGLLGSREAIAEAKCELLANMDNSGVAIINGDNDLLVATA 238
Query: 261 TVPRGVRKVFFGWRRG 276
T + +G + G
Sbjct: 239 TKVWTGETITYGLKSG 254
>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH1134]
gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus F65185]
gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-2]
gi|365163835|ref|ZP_09359935.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 7_6_55CFAA_CT2]
gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH1134]
gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-2]
gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus F65185]
gi|363614641|gb|EHL66124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 7_6_55CFAA_CT2]
Length = 458
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLATETVTFGDARAND 253
>gi|392960451|ref|ZP_10325919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans DSM 17108]
gi|421054793|ref|ZP_15517758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans B4]
gi|421071655|ref|ZP_15532771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans A11]
gi|392440474|gb|EIW18154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans B4]
gi|392446920|gb|EIW24191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans A11]
gi|392455028|gb|EIW31835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans DSM 17108]
Length = 452
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 146/261 (55%), Gaps = 20/261 (7%)
Query: 27 WTINEIAESVNGK-ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+ + G I+ P G + TDTR + K F + G++FD HEFI +
Sbjct: 4 FTVEEVCLATKGTLIVSAQPKGFTGVSTDTRTV--QKGDLFIPLIGENFDGHEFIQQAIE 61
Query: 84 GKGCVGVI----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV+ G + FV +TL +L ++A + R RF+ +V +TG
Sbjct: 62 -KGASGVVFSHKGMTLPQYITAIFV-------TDTLLALQDLARFHRQ-RFTIPVVAITG 112
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M A L S +V ++ N+NN +G+ L+L+ + + ++AV+EMGM GKG+
Sbjct: 113 SNGKTTTKDMAAAVL-SNQFHVLKTEANYNNEIGLPLTLLQLTQEHEVAVVEMGMRGKGQ 171
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I +LA +A P I ++ NVG++HLE LGS+E++A AK E+ + V +LN D+ V
Sbjct: 172 IRQLANIALPTIAIITNVGETHLELLGSMEEIAAAKAELLEAIPENGVSILNGDNVYVRE 231
Query: 260 LTVPRGVRKVFFGWRRGCDVR 280
R VFFG + G D+R
Sbjct: 232 KAKEAKSRIVFFGLQEG-DIR 251
>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y4.1MC1]
gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y4.1MC1]
Length = 458
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 16/224 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ TDTR + K + + G FD H F+ L KG V+ ++ + D + V
Sbjct: 30 VSTDTRTI--QKGNLYVPLKGAKFDGHTFVQDAL-DKGASAVLWSETEGSPPADVPVIVV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A R + S ++G+TGS GK+TTK ++A AL + V ++ G
Sbjct: 87 D-----DTLRALQRLAHRYRK-QLSAKVIGITGSNGKTTTKDIVA-ALLATTYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ ++ V++AV+EMGMS GEI L+ +A P+ ++ N+G+SHL+ LG
Sbjct: 140 NLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGV 266
S E +A+AK EI K + V N D+PL VA+L +P V
Sbjct: 200 SREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVAHLPLPEHV 243
>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-29]
gi|423444414|ref|ZP_17421319.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X2-1]
gi|423537255|ref|ZP_17513673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB2-9]
gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-29]
gi|402411096|gb|EJV43472.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X2-1]
gi|402459707|gb|EJV91443.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB2-9]
Length = 458
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ NVG++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLATETVTFGDARAND 253
>gi|336236998|ref|YP_004589614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
thermoglucosidasius C56-YS93]
gi|335363853|gb|AEH49533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 458
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 16/224 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ TDTR + K + + G FD H F+ L KG V+ ++ + D + V
Sbjct: 30 VSTDTRTI--QKGNLYVPLKGAKFDGHTFVQDAL-DKGASAVLWSETEGSPPADVPVIVV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A R + S ++G+TGS GK+TTK ++A AL + V ++ G
Sbjct: 87 D-----DTLRALQRLAHRYRK-QLSAKVIGITGSNGKTTTKDIVA-ALLATTYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ ++ V++AV+EMGMS GEI L+ +A P+ ++ N+G+SHL+ LG
Sbjct: 140 NLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGV 266
S E +A+AK EI K + V N D+PL VA+L +P V
Sbjct: 200 SREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVAHLPLPEHV 243
>gi|406909929|gb|EKD50077.1| hypothetical protein ACD_62C00662G0005 [uncultured bacterium]
Length = 459
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 14/232 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR + P + AI G+ D H++++ + KG V + V D +
Sbjct: 28 ISRDTRNIKPG--DIYVAIKGETHDGHDYVAVA-FEKGAVAALVENVPVKRDNLIIVP-- 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ + +L +A Y R +F+ L+ +TGS GK+TTK ++A L G+ V + GN
Sbjct: 83 ----HVIRALGELAAYYRR-KFTQPLIAITGSNGKTTTKELLAHVLSQQGL-VSATQGNL 136
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GS 227
NN +GV ++ D V+EMGMS GEI L ++A P + ++ ++G +HLE + G+
Sbjct: 137 NNHIGVPFTIFSFDPKAHFLVVEMGMSHPGEIAWLTKIANPTVGLITSIGQAHLEGVGGT 196
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
LE VA+AKGE+F + + ADDPL+A L P +K+ FG+ DV
Sbjct: 197 LEKVAQAKGELFDGLEPSATAIYFADDPLIAGL--PTRAQKITFGFEPTRDV 246
>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 7822]
gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 7822]
Length = 454
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 124/214 (57%), Gaps = 17/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-----VCNNWDKGF 103
I TD+R ++ + F A+ G++FD +EF + KG + +I ++ N +
Sbjct: 33 ITTDSREIS--DGEIFVALRGKNFDGYEFTEIAVE-KGAIAIIVDREVPVIASKNIPQFI 89
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
V+ +TLN+ +A + RN + + ++ VTGSVGK+TTK +IA L G V +
Sbjct: 90 VK-------DTLNAYQKIAHWWRN-QLTIPVIAVTGSVGKTTTKELIAAVLSQRG-KVHK 140
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ N+NN +GV +L+ +D++ D AV+EM M KGEI L +ARP + ++ NVG +H+
Sbjct: 141 TRANYNNEIGVPKTLLELDKSHDYAVIEMAMRAKGEIALLTEIARPTLGIITNVGTAHIG 200
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK E+ ++ + +LN D+PL+
Sbjct: 201 RLGSTEAIAAAKCELLEQMSPDTIAILNHDNPLL 234
>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 10876]
gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 10876]
Length = 454
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 138/260 (53%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L+ GI + DTR + K + I G+ FD H F+ +
Sbjct: 2 LKQVEQMVNGTGLEEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 59
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 60 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 111
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 112 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 170
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 171 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 229
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 230 VPEMNLAAETVTFGDARAND 249
>gi|421058873|ref|ZP_15521518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Pelosinus fermentans B3]
gi|392459915|gb|EIW36275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Pelosinus fermentans B3]
Length = 344
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 146/261 (55%), Gaps = 20/261 (7%)
Query: 27 WTINEIAESVNGK-ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+ + G I+ P G + TDTR + K F + G++FD HEFI +
Sbjct: 4 FTVEEVCLATKGTLIVSAQPKGFTGVSTDTRTV--QKGDLFIPLIGENFDGHEFIQQAIE 61
Query: 84 GKGCVGVI----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV+ G + FV +TL +L ++A + R RF+ +V +TG
Sbjct: 62 -KGASGVVFSHKGMTLPQYITAIFV-------TDTLLALQDLARFHR-QRFTIPVVAITG 112
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M A L S +V ++ N+NN +G+ L+L+ + + ++AV+EMGM GKG+
Sbjct: 113 SNGKTTTKDMAAAVL-SNQFHVLKTEANYNNEIGLPLTLLQLTQEHEVAVVEMGMRGKGQ 171
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I +LA +A P I ++ NVG++HLE LGS+E++A AK E+ + V +LN D+ V
Sbjct: 172 IRQLANIALPTIAIITNVGETHLELLGSMEEIAAAKAELLEAIPENGVSILNGDNVYVRE 231
Query: 260 LTVPRGVRKVFFGWRRGCDVR 280
R VFFG + G D+R
Sbjct: 232 KAKEAKSRIVFFGLQEG-DIR 251
>gi|421066756|ref|ZP_15528316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Pelosinus fermentans A12]
gi|392453225|gb|EIW30112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Pelosinus fermentans A12]
Length = 344
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 146/261 (55%), Gaps = 20/261 (7%)
Query: 27 WTINEIAESVNGK-ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+ + G I+ P G + TDTR + K F + G++FD HEFI +
Sbjct: 4 FTVEEVCLATKGTLIVSAQPKGFTGVSTDTRTV--QKGDLFIPLIGENFDGHEFIQQAIE 61
Query: 84 GKGCVGVI----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV+ G + FV +TL +L ++A + R RF+ +V +TG
Sbjct: 62 -KGASGVVFSHKGMTLPQYITAIFV-------TDTLLALQDLARFHR-QRFTIPVVAITG 112
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M A L S +V ++ N+NN +G+ L+L+ + + ++AV+EMGM GKG+
Sbjct: 113 SNGKTTTKDMAAAVL-SNQFHVLKTEANYNNEIGLPLTLLQLTQEHEVAVVEMGMRGKGQ 171
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I +LA +A P I ++ NVG++HLE LGS+E++A AK E+ + V +LN D+ V
Sbjct: 172 IRQLANIALPTIAIITNVGETHLELLGSMEEIAAAKAELLEAIPENGVSILNGDNVYVRE 231
Query: 260 LTVPRGVRKVFFGWRRGCDVR 280
R VFFG + G D+R
Sbjct: 232 KAKEAKSRIVFFGLQEG-DIR 251
>gi|374332618|ref|YP_005082802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pseudovibrio sp. FO-BEG1]
gi|359345406|gb|AEV38780.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pseudovibrio sp. FO-BEG1]
Length = 1235
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 87/271 (32%), Positives = 139/271 (51%), Gaps = 19/271 (7%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
P+W +++ E+V+G + I I D+R + P + FFAI G++FD H F +
Sbjct: 763 PLWLLSDFLEAVDGDVHGDLADDITGISIDSRTIQPG--EAFFAIKGENFDGHAFAGTAV 820
Query: 83 YGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
V V+ + +G +V V+ + L +L + AR +R ++ VTGS
Sbjct: 821 EAGASVAVVSREKLGELPEGGRYVAVD-----DVLKALERLGVAAR-ARSKARIIAVTGS 874
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+ TK + L L G+ ++NN GV L+L + + + E+GM+ +GEI
Sbjct: 875 VGKTGTKEALRLCLSKSGIT-HAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEI 933
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLV 257
L +M RP + +V V HLE+ S+ED+ARAK EIF + G V +LN D+ L+
Sbjct: 934 TPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLL 993
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVA 287
L GV+ + FG + G + +A +VA
Sbjct: 994 RYLAAVAGVKNIVSFGMQPG--AQSIAKKVA 1022
>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
saccharolyticum WM1]
gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
saccharolyticum WM1]
Length = 456
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 132/242 (54%), Gaps = 11/242 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV-CNNWDKGFVQVE 107
I D+R + N F + G DAH FI + + G V+ ++ + + ++QVE
Sbjct: 29 ISIDSRTM--KGNDLFVPLIGDKVDAHRFIG-QAFDNGAAAVLTSRHDAMDSARPWIQVE 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+T +L + Y R+ R LVG+TGSVGK+TT+ M+A AL S +V+++ GN
Sbjct: 86 -----DTKKALQAIGSYYRD-RLILPLVGITGSVGKTTTREMVACAL-SARYSVYKTPGN 138
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
N++VGV +++ I +I V+E+GMS GE+ +AR+A+ ++ V+ N+G +H+E LG+
Sbjct: 139 HNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQMAVITNIGVTHIEQLGT 198
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+++ R K I G + LN DD + + G R +++G CD R + +
Sbjct: 199 QDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKEGCRTIYYGTGENCDYRALNVHLE 258
Query: 288 NG 289
G
Sbjct: 259 EG 260
>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. oral taxon 078 str. F0262]
gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. oral taxon 078 str. F0262]
Length = 438
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 19/268 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R + F I G H D H+FI + +G V+ ++ K + +V
Sbjct: 17 IYLDSR--EDGRGGLFVPIIGAHKDGHDFIEMAVE-RGAAAVLSSRDVTELKKKYPEVRF 73
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L + Y + RF G ++GVTGS GK+T +SM+ALAL S VFQ+ GN
Sbjct: 74 WQVPDTRAALQEIGRYEKE-RFRGKVIGVTGSSGKTTMRSMLALALSS-ERRVFQTAGNA 131
Query: 169 NNRVGVALSLIGIDRA-VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
N+++GV ++L + R+ +IAVLE+GMS GE+ +A +AR ++ ++ N+G +H+E+L +
Sbjct: 132 NSQLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENLKT 191
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR--------GVRKVFFGWRRGCDV 279
E++ K I + G LN +DPL+A+LT R G R +R ++
Sbjct: 192 KENILLEKLHILDGAADGAALYLNGEDPLLASLTEERIHDLGISLGKRVELHFYRAEEEI 251
Query: 280 RLVAA-----QVANGGLGVQVVLEKERE 302
L AA Q A L V + L +RE
Sbjct: 252 PLSAAGHHMQQNAAAALAVSLDLGLQRE 279
>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 458
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria sp. PCC 6506]
gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria sp. PCC 6506]
Length = 453
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 18/214 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW-----DKGF 103
I TDTR L + F A+ G++FD H+F++ L +G I V +W D
Sbjct: 30 IATDTRNL--KGGEVFVALRGENFDGHKFVAKALE----LGAIAAVVDRSWESEGLDLPL 83
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
++VE +TL + +A + R+ +F+ ++ VTGSVGK+TTK +IA L + G NV +
Sbjct: 84 LRVE-----DTLKAYQAIARWWRD-QFNIPVIAVTGSVGKTTTKELIAAVLTTKG-NVLK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ N+NN +GV +L+ + + AV+EMGM GEI L ++ARP I V+ NVG +H+
Sbjct: 137 TQLNYNNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPTIAVITNVGTAHIG 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK E+ E + +LN+D+ L+
Sbjct: 197 RLGSREAIAQAKCELLAEMPNDSIAILNSDNALL 230
>gi|365156795|ref|ZP_09353091.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
smithii 7_3_47FAA]
gi|363626852|gb|EHL77817.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
smithii 7_3_47FAA]
Length = 457
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 11/257 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + K F + G H D H ++ + G + + N + F +
Sbjct: 29 VSIDSRKI--EKGNLFVPLKGDHTDGHRYVETA-FQNGAAASLWQKDVPNPPEHFPIIMV 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +TL +L +A R+ S +VGVTGS GK+TTK +I+ L S V ++ GN+
Sbjct: 86 D---DTLEALQRLAKAYRDE-LSIKVVGVTGSNGKTTTKDIISNLLSS-RYRVQKTEGNY 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+L+ + + + A+LEMGMS KGEI L RMARP+I V+ N+G++HL LGS
Sbjct: 141 NNHIGLPLTLLSLKQDTEAAILEMGMSSKGEIDFLTRMARPDIAVITNIGEAHLLDLGSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAAQV 286
E +A AK EI V V + D+PL+ L P K FG D+ +
Sbjct: 201 EAIAEAKFEIINGLDKNGVLVYHGDEPLLERLVQNTPHLTVKT-FGESAKNDLYPTKIRQ 259
Query: 287 ANGGLGVQVVLEKEREM 303
N G + E ERE
Sbjct: 260 TNEGSQFSINTEPEREF 276
>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
botulinum C str. Eklund]
gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
botulinum C str. Eklund]
Length = 457
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 141/260 (54%), Gaps = 18/260 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + K+ F A+ G +F+A+++I + KG I +++ F +
Sbjct: 29 ISTDTRKIT--KDSIFIALKGDNFNANDYI-VDASDKGANLCIVDEI------NFNDSDL 79
Query: 109 NGNV------NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
N N NT +L+++A R S+ + ++G+TGS GK++TK + A AL S VF
Sbjct: 80 NENTSIILVENTRKALLDLAELYR-SKLNIKIIGITGSTGKTSTKDLTAAALSS-KYKVF 137
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN+NN VG+ L + +D + D+AVLEMGMS EI LA++A+P+I ++ N+G SH+
Sbjct: 138 KTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFEEIHRLAKVAKPDIALITNIGISHI 197
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282
E+L + E++ +AK EI + ++N ++ L+ N+ + + G+ + D
Sbjct: 198 ENLKTRENILKAKMEITDFFNKDSILIVNKENDLLKNVK-SNEYKLMSIGFEKDVDYTAE 256
Query: 283 AAQVANGGLGVQVVLEKERE 302
+ V E E+E
Sbjct: 257 DIFTDENHIEFTVCHEDEKE 276
>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
protein [Pseudovibrio sp. JE062]
gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
protein [Pseudovibrio sp. JE062]
Length = 1257
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 87/273 (31%), Positives = 140/273 (51%), Gaps = 19/273 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+ P+W +++ E+V+G + I I D+R + P + FFAI G++FD H F
Sbjct: 783 HGPLWLLSDFLEAVDGDVHGDLADDITGISIDSRTIQPG--EAFFAIKGENFDGHAFAGT 840
Query: 81 ELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ V V+ + +G +V V+ + L +L + AR +R ++ VT
Sbjct: 841 AVEAGASVAVVSREKLGELPEGGRYVAVD-----DVLKALERLGVAAR-ARSKARIIAVT 894
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+ TK + L L G+ ++NN GV L+L + + + E+GM+ +G
Sbjct: 895 GSVGKTGTKEALRLCLSKSGIT-HAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRG 953
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---P 255
EI L +M RP + +V V HLE+ S+ED+ARAK EIF + G V +LN D+
Sbjct: 954 EITPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYD 1013
Query: 256 LVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVA 287
L+ L GV+ + FG + G + +A +VA
Sbjct: 1014 LLRYLAAVAGVKNIVSFGMQPG--AQSIAKKVA 1044
>gi|435854482|ref|YP_007315801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacteroides halobius DSM 5150]
gi|433670893|gb|AGB41708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacteroides halobius DSM 5150]
Length = 458
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 138/249 (55%), Gaps = 13/249 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ EI ++V GK+ I I TDTR L P F A+ G +F+AH FI
Sbjct: 4 LSVAEITKAVAGKLTANVDFKIDNISTDTRNLKPG--SLFIALIGDNFNAHNFIEDAFEK 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ ++ +V + DK + VE +T +L ++A Y RN +FS ++ VTGS GK+
Sbjct: 62 GAKIAIVSQEV--DLDKPLIVVE-----DTTKALQDLASYYRN-QFSLPVIAVTGSTGKT 113
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK MIA ++ +S GN+NN +G+ L+L ++ V+EMGM G G+I ELA
Sbjct: 114 TTKDMIAAVVDQ-KYKTLKSQGNFNNEIGLPLTLFRLNSTHQAVVVEMGMRGLGQIRELA 172
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A+P + VV NVG +H+E LGS +A+AKGE+ + + + +LN DD V +
Sbjct: 173 QIAKPNLGVVTNVGVTHIELLGSQAKIAQAKGELIESLEQESIAILNGDDKRVRRMKELT 232
Query: 265 GVRKVFFGW 273
+ + +G
Sbjct: 233 SAQVITYGL 241
>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii A2-165]
gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii A2-165]
Length = 454
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 136/260 (52%), Gaps = 14/260 (5%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGF 103
P ++ TD+R + P F A G+ FD H+F + L G CV V N+ +G
Sbjct: 24 PVTLVTTDSREVCPG--CIFVAFPGEKFDGHDFAAKALENGALCV------VLNHPVEGV 75
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + ++ ++++ + R S+F +VGVTGSVGK+TTK M A+ G + +
Sbjct: 76 PEEKSVICPDSYHAMMVLGANYR-SQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTI-K 133
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN +G+ ++ I + AV+EMGMS GEI L++ ARP++ ++ +G SH+
Sbjct: 134 TEGNQNNELGLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIG 193
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW-RRGCDVRLV 282
+LGS E++ +AK EI G VLN DDP + +P VR V+F DV
Sbjct: 194 NLGSQENICKAKLEICAGLPEGAPLVLNGDDPFLRKAVLPDHVRPVWFSLGDENADV--C 251
Query: 283 AAQVANGGLGVQVVLEKERE 302
A + G+ VLE E
Sbjct: 252 ALSIQQDEKGMSFVLEDHEE 271
>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-3]
gi|423381729|ref|ZP_17359012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1O-2]
gi|423467854|ref|ZP_17444622.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-1]
gi|423542982|ref|ZP_17519370.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB4-10]
gi|423543711|ref|ZP_17520069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB5-5]
gi|423626834|ref|ZP_17602609.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD148]
gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-3]
gi|401167097|gb|EJQ74391.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB4-10]
gi|401186993|gb|EJQ94069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB5-5]
gi|401250189|gb|EJR56491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD148]
gi|401628656|gb|EJS46490.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1O-2]
gi|402412291|gb|EJV44651.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-1]
Length = 458
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLATETVTFGDARAND 253
>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorea
producens 3L]
gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorea
producens 3L]
Length = 457
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 13/218 (5%)
Query: 39 KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98
KIL+ GI TDTR L P Q F A+ G+ FD H + + + KG + VI +
Sbjct: 24 KILEKSFTGI-TTDTRNLEPG--QLFLALRGEKFDGHNYAALAVE-KGALTVIAEATNAS 79
Query: 99 WDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES 156
+G +QVE NTL + +A + R+ +F ++ VTGSVGK+TTK +IA L +
Sbjct: 80 QLEGLPLIQVE-----NTLKAYQQIARWWRD-QFQIPVIAVTGSVGKTTTKELIAAVLST 133
Query: 157 LGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLN 216
G V ++ N+NN +GV +L+ + D AV+EM M G G+I EL +A P + V+ N
Sbjct: 134 KG-TVLKTQANYNNEIGVPKTLLELTPDHDYAVIEMAMRGSGQIAELTEIANPTVGVITN 192
Query: 217 VGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
VG +H+ LGS E +A+AK E+ V VLN D+
Sbjct: 193 VGTAHIGLLGSTEAIAKAKCELLAHMSNNGVAVLNHDN 230
>gi|443327286|ref|ZP_21055914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Xenococcus sp. PCC 7305]
gi|442793078|gb|ELS02537.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Xenococcus sp. PCC 7305]
Length = 450
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 9/208 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR P F A+ G+ FD H+F + + ++ Q+ D V
Sbjct: 34 STDTRNFPPGG--IFLALEGEQFDGHDFAAMAIEQGATALILSRQLSLTSDVPQFIV--- 88
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+TL + +AC+ R+ RF+ ++GVTGSVGK++TK +IA L + G V ++ N+N
Sbjct: 89 --ADTLTAYQQIACWWRD-RFNIPIIGVTGSVGKTSTKELIAAVLGTQG-KVLKTQANYN 144
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +GV +L+ I D AV+EM M G GEI L +A+P I V+ NVG +H+ LGS E
Sbjct: 145 NEIGVPKTLLEITPEHDYAVIEMAMRGLGEIALLTDIAKPTIGVITNVGTAHIGRLGSKE 204
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLV 257
+A+AK E+ +LN D+PL+
Sbjct: 205 AIAQAKCELLARMSPQSTAILNYDNPLL 232
>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Syntrophobacter fumaroxidans MPOB]
gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Syntrophobacter fumaroxidans MPOB]
Length = 463
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 12/233 (5%)
Query: 27 WTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
WT+ +I ++V G+++ P I TDTR L ++ F A+ G+ FD H+FIS +
Sbjct: 3 WTVAQIVDAVRGRLMAGDPALPVDAISTDTRSL--RRSDCFLALAGERFDGHDFISAAVE 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSV 141
KG V+ V + +G V+ V ++L + AR +R+S + G+TGS
Sbjct: 61 -KGAAVVV---VASGRGEGAVRAGSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSN 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A LE + ++ GN NN++GV L+L+ +D + AV+EMG++ GE+
Sbjct: 117 GKTSTKELLAAILEHRH-GILKNRGNLNNQIGVPLTLLTMDPTHEAAVIEMGINVPGEMA 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
L +A P + ++ N+ +HLE LGSL+ + + KG ++ + V+N DD
Sbjct: 176 RLVEIAGPTLGLITNIQPAHLEGLGSLDGILKEKGRLWDALDAEGIAVVNLDD 228
>gi|423450243|ref|ZP_17427121.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5O-1]
gi|401126251|gb|EJQ33995.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5O-1]
Length = 458
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLATETVTFGDARAND 253
>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Ahrensia sp. R2A130]
gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Ahrensia sp. R2A130]
Length = 1015
Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 94/273 (34%), Positives = 140/273 (51%), Gaps = 31/273 (11%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI-------ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P+WT++ + E+ G W P G + DTR L P +FAI G D H+F
Sbjct: 542 PLWTLDAMGEATKG----WLPDGDTEIAITGLSIDTRSLQPGDA--YFAIRGDVHDGHKF 595
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN-GNV----NTLNSLVNMACYARNSRFSG 132
++ V V V +W ++EG+ G + + L++LV + AR +R S
Sbjct: 596 VAAAHAAGATVSV----VAKDW---VGRLEGDCGRLLVVDDVLHALVRLGLAAR-ARTSA 647
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+V +TGSVGK+TTK M+ L + G +V + ++NN GV L+L + D AV+E+
Sbjct: 648 QVVAITGSVGKTTTKEMLRTGLAACG-HVHAAVASFNNHWGVPLTLARMPADSDFAVIEI 706
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ GEI L +M RP + ++ NV HL + S++++A AK EIF G VLNA
Sbjct: 707 GMNHPGEITPLVQMTRPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNA 766
Query: 253 DD---PLVANLTVPRGV-RKVFFGWRRGCDVRL 281
DD P++ + V V FG DVRL
Sbjct: 767 DDERLPIMLDRATEAEVANTVLFGEAPDADVRL 799
>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1271]
gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1271]
Length = 458
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acaryochloris marina MBIC11017]
gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acaryochloris marina MBIC11017]
Length = 448
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 120/209 (57%), Gaps = 11/209 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P + F A +G++FD H F + +G + I + + V
Sbjct: 33 VNTDTRSLKPQ--EIFLAFSGENFDGHRFAESAVQ-QGAIAAIVDHPIDAATPQLV---- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R +F ++ +TGSVGK+TTK +I+ L + G +V ++ N+
Sbjct: 86 --VPDTLVAYQRLGQWWRQ-QFQIPIIAITGSVGKTTTKELISAVLGTAG-SVLKTEANY 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+G+ D AV+EMGM G GEI EL+++A+P I V+ NVG +H+ LGS
Sbjct: 142 NNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAELSQIAQPTIGVITNVGTAHIGRLGSR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ + + VLNAD+ L+
Sbjct: 202 EAIAQAKCELLAQMPAESLAVLNADNSLL 230
>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cytotoxicus NVH 391-98]
gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cytotoxicus NVH 391-98]
Length = 458
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 139/262 (53%), Gaps = 24/262 (9%)
Query: 28 TINEIAESVNG-----KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ +I + VNG K G+ DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQIEKMVNGTGLAEKYFDMTAQGV-SIDTRKM--EKGNVYVPIQGERFDGHSFVEKAI 61
Query: 83 YGKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ V N N FV+ +TL +L +A R+ + + +VGVTG
Sbjct: 62 ESGAVATLWKRDVQNPPANMPVIFVE-------DTLEALQMLAKNYRD-QLNVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ +IAVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEEDTEIAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS + +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCD 278
VP+ V + FG R D
Sbjct: 233 -RVPKMDLAVETITFGDARAND 253
>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-18]
gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-18]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLATETVTFGDARAND 253
>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus xanthus DK 1622]
gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus xanthus DK 1622]
Length = 466
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 121/234 (51%), Gaps = 8/234 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV-CNNWDKGFVQVE 107
+CTDTR L P F A+ G+ FDAH F+ G V+ G E
Sbjct: 30 VCTDTRALTPGC--LFVALVGERFDAHAFVDAAAKGGAAGAVVARGRPLPALPDGLTLYE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ +TL +L + + R RF + V GS GK+TTK M+ L + G ++ GN
Sbjct: 88 VD---DTLRALGALGRHHRQ-RFRIPVCAVGGSNGKTTTKEMVGAILATRG-PALKTEGN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L ++ AV+E+GM+ GEI LAR+ +P+ V+ V HLE LGS
Sbjct: 143 LNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLARVVQPDAGVITVVQPEHLEGLGS 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
+E VA A+GE+FQE G V+N DD L+ G +++ FG DVRL
Sbjct: 203 IEGVAAAEGELFQEMGHGTTIVVNVDDALIPAQAERSGAQRLTFGRAEHADVRL 256
>gi|345014461|ref|YP_004816815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
violaceusniger Tu 4113]
gi|344040810|gb|AEM86535.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
violaceusniger Tu 4113]
Length = 479
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 131/273 (47%), Gaps = 20/273 (7%)
Query: 28 TINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIA V G+ P G + D+R + P F A+ G+ D H+F +
Sbjct: 5 SLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGS--LFAALPGERVDGHDFARKAI 62
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGS 140
G V+ + D + + + M AR R +V +TGS
Sbjct: 63 EA-GATAVLAARPVGTADAPVPAI------VVPDVIAAMGALARAVVERLDATVVALTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK +IA L+ G V+ + G+ NN +G+ L+ + D A VLEMG GKG I
Sbjct: 116 AGKTSTKDLIAQLLQRRGPTVW-TPGSLNNEIGLPLTAMSADEATLHLVLEMGARGKGHI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ---ESKLGDVCVLNADDPLV 257
LA + P I +VLNVG +H+ G E +A AKGE+ + ++ G V VLNADDPLV
Sbjct: 175 RYLATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEEGGVAVLNADDPLV 234
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ R V FG DVR ++A+GG
Sbjct: 235 RAMMSRTKARTVLFGEAEDADVRAGNVRLADGG 267
>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-28]
gi|407708171|ref|YP_006831756.1| transcriptional regulator crp [Bacillus thuringiensis MC28]
gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-28]
gi|407385856|gb|AFU16357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis MC28]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLATETVTFGDARAND 253
>gi|399888850|ref|ZP_10774727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium arbusti SL206]
Length = 462
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 144/263 (54%), Gaps = 19/263 (7%)
Query: 27 WTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+++ I +++ GK++ G I DTR + + F AI G++F+A+ F + E
Sbjct: 4 MSLSSIVKAIEGKLIVKGSKENFNSISIDTRKIE--QGSIFIAIKGENFNANNF-TVEAS 60
Query: 84 GKGCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG I +++ + D V VE NT +L+ +A + R S + +VG+T
Sbjct: 61 RKGAALCIVDEIKFKDKELSKDTSIVIVE-----NTKKALLKLAEFYR-STLNIKIVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK M A+ S VF++ GN+NN +G+ L + +D DIAVLEMGMS
Sbjct: 115 GSTGKTSTKDM-TYAILSEKYKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSNFF 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A+ A+P+I ++ N+G SH+E+L + E++ +AK EI K +LN D+ +++
Sbjct: 174 EIHNMAKSAKPDIAIITNIGISHIENLKTRENILKAKLEITDYFKDSSTLILNVDNDMLS 233
Query: 259 NLTVP-RGVRKVFFGWRRGCDVR 280
++ + + + G D+R
Sbjct: 234 TVSKEDKNYKLIRTGIESNSDIR 256
>gi|353328190|ref|ZP_08970517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 16/274 (5%)
Query: 27 WTINEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W N I ++ G+ + I TDTR + K F A+ G+ FD H+F+ E +
Sbjct: 4 WNANNIIDATGGRGEGVCNSVYSSNISTDTR--SIKKGDLFIALKGKKFDGHDFLH-EAF 60
Query: 84 GKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSV 141
KG V V+ N+ VQ +TL +L NMA Y RN + ++ +TGSV
Sbjct: 61 LKGAVAAVVSEDKYRNFPLIIVQ-------DTLKALHNMASYYIRNVLVNAKVITITGSV 113
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L G + + + N NN +G+ +++ + + +LEMGM+ GEI
Sbjct: 114 GKTTTKDMLHTVLSQYGAS-YANKDNLNNNIGLPFTILKVPKNCQYLILEMGMNRAGEIK 172
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
EL++++ P+I V+ N+ +H+E+ SL D+A+AK E+ K VLN D+ L
Sbjct: 173 ELSKISNPDIAVITNIEPAHVENFSSLLDIAQAKLEVLCGMKNNGTLVLNKDNKHYDYLL 232
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
V FG VRL+ + G+ +++
Sbjct: 233 SNADRNVVSFGKNESATVRLLDLIRNDSGINLKI 266
>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 4342]
gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 4342]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|423433900|ref|ZP_17410881.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X12-1]
gi|401128050|gb|EJQ35754.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X12-1]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLATETVTFGDARAND 253
>gi|429759640|ref|ZP_19292138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica KON]
gi|429179601|gb|EKY20848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica KON]
Length = 472
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 137/266 (51%), Gaps = 24/266 (9%)
Query: 22 SNSPIWTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHE 76
SN +T+ EI ++ +G L++ I TDTR + F A+ G FD H+
Sbjct: 19 SNMAEFTLQEIIDATSGTCKGDVSLQFKD---ISTDTRTIEAG--YVFVALRGDTFDGHD 73
Query: 77 FISPELYGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
FI+ + KG I G V G + VE NTL + ++A + R RF
Sbjct: 74 FINTAIE-KGATAAIVEKGRSV-----DGIICVEVE---NTLKAYQDLANFHRR-RFQIP 123
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
+V +TGS GK+TTK M+A L S NV ++ N+NN +G+ +L+ + + V+EMG
Sbjct: 124 VVAITGSSGKTTTKEMVAAVL-STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMG 182
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
M G G+I ELA +A P I ++ NVG SH+E LGS E +A AKGE+ + V +LN D
Sbjct: 183 MRGLGQIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNED 242
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDV 279
D V ++ + V +G V
Sbjct: 243 DYFVKAMSSIAKGKTVTYGIHSNATV 268
>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
gi|167654405|gb|EDR98534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerostipes caccae DSM 14662]
Length = 451
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 141/287 (49%), Gaps = 29/287 (10%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
TI +I + G +L P + TD+R + P+ F I G+ +AH+F+ L
Sbjct: 4 MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHT--LFVPIVGERVNAHKFVESALK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G + + Q EG + +TL ++ +A + RN + S ++G+TG
Sbjct: 62 DGGA----------SLTQEHEQAEGPHPIIKVPDTLKAMQQIASFYRN-KMSLPIIGITG 110
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TT+ MIA L+ VF++ GN N++VGV L+L + I VLEMGMS G+
Sbjct: 111 SVGKTTTREMIAHVLKG-KYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQ 169
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + RP VV NVG SH+E +GS +++ R K +I V LN D+ ++
Sbjct: 170 ITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMIRK 229
Query: 260 ----LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+T P FFG+ + C R ++ NG V E RE
Sbjct: 230 HIGYVTHPYE----FFGFSKDCSYRAEDSKEINGQTHFTFVHEDMRE 272
>gi|407973665|ref|ZP_11154576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitratireductor indicus C115]
gi|407430725|gb|EKF43398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitratireductor indicus C115]
Length = 474
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 12/269 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT ++A++ G+ L P GI + DTR L P FFAI G+ FD H+F +
Sbjct: 2 SVLWTFEQLAQATGGRPLGSVPSGITGVSIDTRSLKPG--DAFFAIQGERFDGHDFATAA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V V+ G + V + L +L ++ AR R ++ VTGS
Sbjct: 60 MAAGASVLVVSEGKLPAL--GRLAVAKLVVPDVLKALEDLGRAARE-RTKAKVIAVTGSA 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ A ++G V + ++NN GV L+L + D AV+E+GM+ GEI
Sbjct: 117 GKTSTKEMMRQAFSAVG-TVHAADRSFNNHWGVPLTLARMPADCDYAVIEIGMNHPGEIR 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L MARP I VV + +H+ SL+++ARAK EIF+ G ++N DD +++
Sbjct: 176 PLVAMARPHIAVVTLIAAAHMGFFKSLDEIARAKAEIFEGVVKGGYALINRDDKRWKILS 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQV 286
L GV+ ++ FG +V+L+ A++
Sbjct: 236 TLAAEAGVKNIWGFGENARSEVKLLHAEL 264
>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
carboxidivorans P7]
gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
carboxidivorans P7]
gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
Length = 462
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 139/240 (57%), Gaps = 18/240 (7%)
Query: 27 WTINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +EI +V GK++ G I TDTR + +K+ F A+ G++F+ +E+I
Sbjct: 4 MTFDEIVNAVQGKVVLQGNYEKFNQISTDTRKI--DKDDIFIALKGENFNGNEYIKV-AS 60
Query: 84 GKGCVGVIGNQVCNNWD---KG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ D KG ++VE +T +L+ +A RN + + ++G+T
Sbjct: 61 DNGASMCIIDEIKYREDEIEKGTTIIKVE-----DTKKALLQLAKAYRN-KLNLKVIGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A AL S VF++ GN+NN +G+ L + +D + DIAVLEMGM+
Sbjct: 115 GSNGKTSTKDLLAAALSS-KYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ NVG SH+ +LGS E++ +AK EI + ++N D+ L++
Sbjct: 174 EIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDLLS 233
>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate-d-alanyl-d-alanyl ligase
[Heliobacterium modesticaldum Ice1]
gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate-d-alanyl-d-alanyl ligase
[Heliobacterium modesticaldum Ice1]
Length = 498
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 9/230 (3%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++ +AE + G++ G G D+R +AP FFA+ G+ D H+F+ P
Sbjct: 6 LSRLAEWMQGRVEGDGTARISGTAVVDSRKVAPGD--VFFALPGEKVDGHDFV-PAALAA 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNT-LNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G + ++ + W +G VN L +L + A + R ++ + ++ VTGS GK+
Sbjct: 63 GAACAVVRRIDDGWTAALRPGQGLIVVNDGLQALQDCARHYR-TQLAIPVIAVTGSTGKT 121
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK ++A A+ + +V +S GN+NN +G+ L+L+G+ ++EMGM GKG+I L
Sbjct: 122 STKDLLAAAVGAQ-RDVMKSPGNFNNEIGLPLTLLGVQEQHQALIVEMGMRGKGQIAALC 180
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
R+ARP++ ++ N+G H+E LGS+E +ARAKGE+ Q V+N +D
Sbjct: 181 RIARPDVGLLTNIGPVHMELLGSMEAIARAKGELLQSLSDKGKAVVNGED 230
>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|423415879|ref|ZP_17392999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3O-2]
gi|423428327|ref|ZP_17405331.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4O-1]
gi|423507748|ref|ZP_17484315.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HD73]
gi|449086890|ref|YP_007419331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|401094717|gb|EJQ02790.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3O-2]
gi|401126649|gb|EJQ34385.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4O-1]
gi|402443147|gb|EJV75060.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HD73]
gi|449020647|gb|AGE75810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLAAETVTFGDARAND 253
>gi|373859818|ref|ZP_09602541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus sp.
1NLA3E]
gi|372450461|gb|EHP23949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus sp.
1NLA3E]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVE 107
+C DTR ++ F G+ D H F+ L + V N V VE
Sbjct: 30 VCIDTRKIS--HGNLFIPFKGEKADGHCFVEQALKQGAAAALWQKDVPNPPLHLPIVVVE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A RN ++G+TGS GK+TTK M A L SL V ++ GN
Sbjct: 88 -----DTLAALQELAKSYRN-ELDIKVIGITGSNGKTTTKDMTA-NLLSLKYKVQKTEGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++G+D ++AVLEMGMSG+GEI L ++ARP+ ++ N+G+SHL LGS
Sbjct: 141 YNNHIGLPLTILGLDEDTNVAVLEMGMSGRGEIQFLTKLARPDAVIITNIGESHLLDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDV 279
E +A AK EI + V D+PL+ N G R V FG D+
Sbjct: 201 REGIAEAKLEIISGLAEDGLIVYLGDEPLLRNRLENTGERNVKTFGRNENNDL 253
>gi|373955131|ref|ZP_09615091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Mucilaginibacter
paludis DSM 18603]
gi|373891731|gb|EHQ27628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Mucilaginibacter
paludis DSM 18603]
Length = 433
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 126/234 (53%), Gaps = 12/234 (5%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
+I TDTR + P FFA+ G FDA+ F L VI N N K + V+
Sbjct: 15 VISTDTRKIIPGS--IFFALKGDKFDANTFAQQALDAGAAYAVIDNGDYNVSQKCIL-VD 71
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L+ L N+A Y R + + VG+TGS GK+TTK +I L S N + +YGN
Sbjct: 72 -----DVLSCLQNLARYHR-KQLNIPFVGLTGSNGKTTTKELIRAVL-SQHFNTYATYGN 124
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+++ ID+ V++AV+EMG + + EI L +A+P ++ NVG +HLE G
Sbjct: 125 LNNHIGVPLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGG 184
Query: 228 LEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDV 279
E V + KGE++ K V +N D ++ ++ R + V ++G G ++
Sbjct: 185 AEGVKKGKGELYDYLKTSKGVIFVNQDSKVLTDMVAERALTDVQYYGSDIGNNI 238
>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
gi|383322505|ref|YP_005383358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325674|ref|YP_005386527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491558|ref|YP_005409234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436825|ref|YP_005651549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
gi|451814921|ref|YP_007451373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
gi|339273857|dbj|BAK50344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
gi|359271824|dbj|BAL29343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274994|dbj|BAL32512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278164|dbj|BAL35681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958682|dbj|BAM51922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
gi|451780890|gb|AGF51859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diamino-pimelate-D-alanyl-D-alanine ligase
[Synechocystis sp. PCC 6803]
Length = 454
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 12/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--V 106
ICTDTR L F A+ G+ FD H FI P+ G + V+ ++ + Q V
Sbjct: 33 ICTDTRSLV--SGDLFLALRGESFDGHSFI-PQALTAGAIAVVTDRPVEGLGETVAQFLV 89
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL + ++A R RF+ ++GVTGSVGK+TTK +IA L G NV ++
Sbjct: 90 E-----DTLVAYQHIAAGWRQ-RFTIPIIGVTGSVGKTTTKELIAAVLSQFG-NVHKTRA 142
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ + D A++EM M G+G+I LA +A+P I ++ NVG +H+ LG
Sbjct: 143 NYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLG 202
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S +A AK E+ +LN D+ L+
Sbjct: 203 SELAIAEAKCELLAHQPPESTAILNRDNALL 233
>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 172560W]
gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 172560W]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLAAETVTFGDARAND 253
>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 318
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 134/262 (51%), Gaps = 18/262 (6%)
Query: 27 WTINEIAESVNGKILK---WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W N I ++ G+ + W I TDTR + K F A+ G++FD H F+ E +
Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIK--KGDLFIALKGKNFDGHNFLH-EAF 60
Query: 84 GKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGS 140
KG + I V K F + V+ +TL +L +MA Y RN ++ VTGS
Sbjct: 61 LKGAIAAI---VSEGKYKSFPLIIVQ-----DTLKALHDMASYYIRNVLIDAKVIAVTGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L GV+ + GN NN +G+ L+++ + +LEMGM+ GEI
Sbjct: 113 VGKTTTKDMLHTVLSQYGVS-HANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
EL++++ P I V+ N+ +H E+ SL DVA+AK EI K VL+ D+ L
Sbjct: 172 KELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL 231
Query: 261 TVPRGVRKVFFGWRRGCDVRLV 282
+ + FG + +V L+
Sbjct: 232 SSHANRNVISFGKDKNAEVCLL 253
>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
halodurans C-125]
gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
halodurans C-125]
Length = 452
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 22/231 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC------VGVIGNQVCNNWDKG 102
+ TDTR + + F + G+ FD H+++ L KG V + N D+
Sbjct: 26 VSTDTRTI--QEGNLFVPLIGERFDGHDYVEQAL-SKGAQASLWATSVPVPESLKNEDRL 82
Query: 103 -FVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
FV +TL +L MA Y R + + +V VTGS GK+T K ++ L LG +
Sbjct: 83 LFVN-------DTLFALQAMAKAYLRQTEPT--VVAVTGSNGKTTVKDLLYATLAPLG-S 132
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
++++ GN+NN +G+ L+++ + +LEMGMSG GEI L+++A P+I VV N+G+S
Sbjct: 133 IYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIAVVTNIGES 192
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
HLE LGS E++A+AK EI K V L+ D+PL+++ V GV+ V F
Sbjct: 193 HLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLLSHY-VKEGVQTVGF 242
>gi|430750522|ref|YP_007213430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermobacillus composti KWC4]
gi|430734487|gb|AGA58432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermobacillus composti KWC4]
Length = 470
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 16/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R P + + F ++G+ FDAH+++ G + W G E
Sbjct: 32 VATDSR--RPAEGRLFIPLSGERFDAHDYVGDAFAGGAAASL--------WQAGRPVPEA 81
Query: 109 NGN-----VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
V+ + + A + ++G+TGS GK++TK M A L + + V +
Sbjct: 82 LAGRPLLLVDDTLAALQRLAAAYRGQLPATVIGITGSNGKTSTKDMTASVL-ARRLRVHK 140
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN +G+ LS++ +D + AVLEMGMSG GEI L R+ARP++ V+ N+GD+HL
Sbjct: 141 TEGNLNNHIGLPLSILAMDENTEAAVLEMGMSGFGEIERLTRIARPDVAVITNIGDAHLL 200
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K G V ++N D+PL+
Sbjct: 201 QLGSREGIAKAKLEIAAGLKEGGVLLINGDEPLL 234
>gi|423405052|ref|ZP_17382225.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-2]
gi|423479889|ref|ZP_17456603.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-1]
gi|401645695|gb|EJS63345.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-2]
gi|402424281|gb|EJV56467.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-1]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKV--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|423422456|ref|ZP_17399487.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-2]
gi|401119846|gb|EJQ27652.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-2]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLAAETVTFGDARAND 253
>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus G9241]
gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus G9241]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|1171075|sp|P45450.1|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Synechocystis sp.]
Length = 454
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 12/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--V 106
ICTDTR L F A+ G+ FD H FI P+ G + V+ ++ + Q V
Sbjct: 33 ICTDTRSLV--SGDLFLALRGESFDGHSFI-PQALTAGAIAVVTDRPVEGLGETVAQFLV 89
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL + ++A R RF+ ++GVTGSVGK+TTK +IA L G NV ++
Sbjct: 90 E-----DTLVAYQHIAAGWRQ-RFTIPIIGVTGSVGKTTTKELIAAVLSQFG-NVHKTRA 142
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ + D A++EM M G+G+I LA +A+P I ++ NVG +H+ LG
Sbjct: 143 NYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLG 202
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S +A AK E+ +LN D+ L+
Sbjct: 203 SELAIAEAKCELLAHQPPESTAILNRDNALL 233
>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-42]
gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-42]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKI--EKGNLYIPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
DSM 2075]
gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
DSM 2075]
Length = 466
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 118/235 (50%), Gaps = 14/235 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTD+R +AP Q F A+ G++FD H+F+ L ++ ++GF
Sbjct: 29 VCTDSRTIAPG--QLFVALKGENFDGHDFVEKALQAGAAAALV--------ERGFNPTAA 78
Query: 109 NG---NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V+ + A + +V VTGS GK++TK MIA L V ++
Sbjct: 79 GQCLLRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQR-FEVHKTK 137
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+L+ + + V EMGM+ GEI LA +ARP++ V+ NVG +HL L
Sbjct: 138 GNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVITNVGPAHLGPL 197
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
GS+E VA AK E+FQ V +N DDPL+A R + FG R
Sbjct: 198 GSIEAVAAAKAELFQALGPEAVAAVNLDDPLLAPWADKLPCRVITFGLDPKAQAR 252
>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus sp. SR1/5]
Length = 462
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K F + G+ DAH FI P++ G + + + D ++QV
Sbjct: 31 ITTDSRKV--EKGGLFVPVVGERVDAHRFI-PQVMEAGALATLSERTLEGADHPYIQVG- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L+ ++ GN+
Sbjct: 87 ----SSLQAVKDIAEFYL-EQLDIPVVGITGSVGKTSTKEVIASVLKE-KYRTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + +IAVLEMG+S GE+ LA++A+P+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRLAKIAKPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+ V +AK EIFQ K VLN DD ++ + ++ VFFG
Sbjct: 201 DGVLKAKTEIFQYVKRN--IVLNGDDDKLSTVKEYNSMQPVFFG 242
>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus E33L]
gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
cereus E33L]
Length = 458
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|359460884|ref|ZP_09249447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acaryochloris sp. CCMEE 5410]
Length = 448
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 121/209 (57%), Gaps = 11/209 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P + F A +G++FD H F + +G + I V + D Q+
Sbjct: 33 VNTDTRSLKPQ--EIFLAFSGENFDGHRFAESAVQ-QGAIAAI---VDHPIDAAIPQLVV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R +F ++ +TGSVGK+TTK +I+ L + G +V ++ N+
Sbjct: 87 P---DTLLAYQRLGQWWRQ-QFQIPIIAITGSVGKTTTKELISAVLGTAG-SVLKTEANY 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+G+ D AV+EMGM G GEI EL+++A+P I V+ NVG +H+ LGS
Sbjct: 142 NNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAELSQIAQPTIGVITNVGTAHIGRLGSR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ + VLNAD+ L+
Sbjct: 202 EAIAQAKCELLAHMPANSLAVLNADNSLL 230
>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas noxia ATCC 43541]
gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas noxia ATCC 43541]
Length = 469
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 8/258 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G+ FD +F + L ++G + + +K + +G
Sbjct: 31 ITTDTRKI--SSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKG 88
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ L + +A +A +F ++ +TGS GK+TTK + A L G V ++
Sbjct: 89 TVLKADDGLRAYQAIA-HAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRG-KVCRTAE 146
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P I +V NV + H+E LG
Sbjct: 147 NYNNEVGLPLTLLGIVPEDFAAVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLG 206
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD VA + GVR + + DVR A
Sbjct: 207 SIENIAKAKAELVEAIPSGGTVILNADDSRVAAMRSFAADGVRILTYAIDADADVRAEAL 266
Query: 285 QVANGGLGVQVVLEKERE 302
Q A G V ER
Sbjct: 267 QCAADGSRFMVTYANERH 284
>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus B4264]
gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH676]
gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-15]
gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-Cer4]
gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1550]
gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis BMB171]
gi|423632142|ref|ZP_17607888.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD154]
gi|423646357|ref|ZP_17621927.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD169]
gi|423653165|ref|ZP_17628464.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD200]
gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus B4264]
gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1550]
gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-Cer4]
gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-15]
gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH676]
gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis BMB171]
gi|401262037|gb|EJR68184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD154]
gi|401287655|gb|EJR93432.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD169]
gi|401302692|gb|EJS08264.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD200]
Length = 458
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP---RGVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPGMNLAAETVTFGDARAND 253
>gi|411117224|ref|ZP_11389711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoriales cyanobacterium JSC-12]
gi|410713327|gb|EKQ70828.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoriales cyanobacterium JSC-12]
Length = 473
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 15/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L P + F A+ G+ FD H F+ + KG + I + F+QV
Sbjct: 43 INTDTRSLQPG--EVFLALRGETFDGHSFVE-TAFEKGAIAAIVDSPAP-IPYPFLQVP- 97
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE-----SLGVNVFQ 163
+TL + +A + R ++F+ ++ VTGSVGK+TTK +IA L V +
Sbjct: 98 ----DTLKAYQAIAHWWR-TQFTNPVIAVTGSVGKTTTKELIAAVLSVPRSSDFTPQVLK 152
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ N+NN +GV +L+ + D A++EMGM +GEI L+++ +P+I V+ NVG +H+
Sbjct: 153 TQANFNNEIGVPKTLLELGSNHDYAIVEMGMRARGEIALLSQITQPDIAVITNVGTAHIG 212
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS +A+AK E+ E + VLN D+PL+
Sbjct: 213 RLGSEAAIAQAKCELLAEMPTSSIAVLNHDNPLL 246
>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus MM3]
gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus MM3]
Length = 458
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A RN + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRN-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 455
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 139/268 (51%), Gaps = 21/268 (7%)
Query: 29 INEIAESVNGKILKWGPPGIIC-----TDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++E+ E + G+I +C TD+R +A KN F A+ G++FD ++++
Sbjct: 7 LSELQEPLQGRITGED----VCFTNVFTDSRQIA--KNGLFVALVGENFDGNDYVEAVAE 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ + + V+ +T +L + + R+ ++G LV +TGS GK
Sbjct: 61 NGAVAALVSRSSSSALPQLCVE-------DTQTALGRLGAFNRD-LYTGPLVAITGSSGK 112
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+T K++I L G + GN+NN VGV L+L+ + + + AV+EMG + +G+I L
Sbjct: 113 TTAKNLINGVLSQRGAT-LATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWL 171
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ RP + V+LN +H+ES GSLE +AR KGEIF GDV V+NAD P +
Sbjct: 172 CELGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKAR 231
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGL 291
G + + D +VA Q+ + G+
Sbjct: 232 AGTATI-LDFSLNGDAAVVATQIESHGI 258
>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Ames]
gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Sterne]
gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0488]
gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0442]
gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0193]
gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0465]
gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0389]
gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0174]
gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Tsiankovskii-I]
gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus NVH0597-99]
gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH820]
gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB102]
gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. CDC 684]
gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 95/8201]
gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BGSC 6E1]
gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0248]
gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. CNEVA-9066]
gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A1055]
gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Western North America USA6153]
gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Kruger B]
gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Vollum]
gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Australia 94]
gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus biovar anthracis str. CI]
gi|376264266|ref|YP_005116978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus F837/76]
gi|386734106|ref|YP_006207287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. H9401]
gi|421511439|ref|ZP_15958309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. UR-1]
gi|421641006|ref|ZP_16081574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. BF1]
gi|423553835|ref|ZP_17530162.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus ISP3191]
gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Ames]
gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
anthracis str. Sterne]
gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0488]
gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0193]
gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0442]
gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0389]
gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0465]
gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0174]
gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Tsiankovskii-I]
gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus NVH0597-99]
gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH820]
gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB102]
gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. CDC 684]
gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BGSC 6E1]
gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 95/8201]
gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0248]
gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus biovar anthracis str. CI]
gi|364510066|gb|AEW53465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
cereus F837/76]
gi|384383958|gb|AFH81619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. H9401]
gi|401182655|gb|EJQ89787.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus ISP3191]
gi|401818517|gb|EJT17717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. UR-1]
gi|403391873|gb|EJY89141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. BF1]
Length = 458
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus R309803]
gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus R309803]
Length = 458
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GII DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 SGAVATLWMKDVANPPENLPVIFVE-------DTLLALQMLAKSYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLMAETVTFGDARAND 253
>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
cereus ATCC 14579]
gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
cereus ATCC 14579]
Length = 454
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 2 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 59
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 60 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 111
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 112 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 170
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 171 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 229
Query: 262 VP---RGVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 230 VPGMNLAAETVTFGDARAND 249
>gi|371776747|ref|ZP_09483069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerophaga sp. HS1]
Length = 432
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 13/211 (6%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC-VGVIGNQVCNNWDKGFVQ 105
G + TDTR L P +FA+ GQHFD + F + E GC + V+ ++ N +KG
Sbjct: 15 GKVITDTRKLEPE--SIYFALKGQHFDGNNF-AKEALSSGCRLAVVDDERLKN-EKGCFW 70
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V N L L N+A Y R + S ++G+TGS GK+TTK +IA L+ NV+ +
Sbjct: 71 VP-----NALKMLQNLARYHR-EKLSIPVIGITGSNGKTTTKELIAAVLKK-KYNVWYTQ 123
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +GV L+++ + +A++EMG + GEI L ++A+P ++ N+G +HLE
Sbjct: 124 GNLNNHIGVPLTILSMPPQTQVAIIEMGANHIGEIAGLCQIAKPNHGLITNIGKAHLEGF 183
Query: 226 GSLEDVARAKGEIFQ-ESKLGDVCVLNADDP 255
GS V + KGE++ K G +N D+P
Sbjct: 184 GSFNGVKKGKGELYDFLKKTGGEIFVNVDNP 214
>gi|423644959|ref|ZP_17620575.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD166]
gi|401268293|gb|EJR74343.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD166]
Length = 458
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP---RGVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPGMNLAAETVTFGDARAND 253
>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST24]
gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST24]
Length = 468
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 16 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 73
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 74 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 125
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 126 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 184
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 185 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 243
Query: 262 VP---RGVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 244 VPGMNLAAETVTFGDARAND 263
>gi|399061134|ref|ZP_10745938.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Novosphingobium sp. AP12]
gi|398036235|gb|EJL29454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Novosphingobium sp. AP12]
Length = 493
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 130/269 (48%), Gaps = 16/269 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W IA +V G + D+R + P FFA+ G+ D H F+ + K
Sbjct: 22 LWDAVSIARAVKGTASADFTVSGVEIDSRDVQPG--DLFFALKGEAMDGHRFVE-MAFAK 78
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G V+ V D + V +T+++L + AR R G ++GVTGSVGK+
Sbjct: 79 GAAAVV---VDRPVDGPHILV-----ADTMDALERLGAAAR-LRARGPVIGVTGSVGKTG 129
Query: 146 TKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
K MI AL+ S + +S ++NN VGV LSL + V EMGM+ GEI L
Sbjct: 130 VKEMIFAALDRSSRGDAHRSVKSYNNHVGVPLSLARMPGRARFGVFEMGMNHAGEIAALT 189
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL---T 261
R RP + V+ + +H+E LGS E +ARAK EIF+ + G V+ D P L
Sbjct: 190 RQVRPHVAVITTIAPAHIEMLGSEEAIARAKAEIFEGLEAGGTAVIPIDSPHYGALREAA 249
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ G + V FG DVRL+ A GG
Sbjct: 250 LACGAQVVAFGKAADADVRLLDTVAAIGG 278
>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor obsidiansis OB47]
gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor obsidiansis OB47]
Length = 448
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 143/273 (52%), Gaps = 13/273 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG+ LK I+ + + + N KN F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKALNGE-LKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I ++ N +V+V+ +TL +L +A Y R+ ++GVTGSVGK
Sbjct: 61 N-GAISFISHKEIENVRVPYVKVK-----DTLAALQGLASYVRDKLKGLTVIGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L S F++ GN NN +G+ S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
RKV G + R Q G +V
Sbjct: 233 ELKRKVVTIGIENESNFRAQNVQRHQNGFSFEV 265
>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis str. Al Hakam]
gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB108]
gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis str. Al Hakam]
gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB108]
Length = 458
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus metalliredigens QYMF]
gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus metalliredigens QYMF]
Length = 457
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 152/280 (54%), Gaps = 26/280 (9%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+NEI E V G LK I + DTR + Q + I G+ F+ HEFI + G
Sbjct: 6 LNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDT--QLYIPIIGEKFNGHEFIEKAM-G 62
Query: 85 KGCVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + NQ N D F+ VE +TL+++ +A RN + + ++G+TGS G
Sbjct: 63 NGATATLWDKNQPIPNIDFPFILVE-----DTLDAIQTLAKAYRN-QLNVKIIGITGSNG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK ++ L+++ ++ GN NN +GV L+L+ + +IAV+EMGMSG GEI
Sbjct: 117 KTSTKDILFNILQTV-YKTHKTLGNLNNHLGVPLTLLEMAENTEIAVIEMGMSGLGEIEL 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VA 258
L+++A ++ ++ N + H+ LGS+E++ +AK EI + K + + D P V
Sbjct: 176 LSKIASSDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLFIYFGDSPPLRVGVE 235
Query: 259 NLTVPRGVRKVFFGWRRGCD--VRLVAAQVANGGLGVQVV 296
L + + +KV FG R D V+L++++ N G+ ++V
Sbjct: 236 KLDLKQ--KKVTFGINRDNDYTVKLISSE--NEGIYFELV 271
>gi|429746753|ref|ZP_19280085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429165327|gb|EKY07386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 444
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALTKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA+LEMG + GEI L + P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAILEMGANHPGEIAFLCSITEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + KGE++ K ++ NAD+P+ L
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEAL 217
>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium populi BJ001]
gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium populi BJ001]
Length = 487
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 128/268 (47%), Gaps = 15/268 (5%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
S++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 SDAPLWTPAALESATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ N ++ + V G L ++ + AR +R +V
Sbjct: 58 RAALEKGAGAAVVAAARANEFEGVGPVLAVPGEDEDPVLEAMRRLGLAAR-ARTGAAIVA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDVR 280
L+A+ R R + FG DVR
Sbjct: 236 YERLLAHAHASRAGRVITFGEHAAADVR 263
>gi|422303626|ref|ZP_16390977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9806]
gi|389791382|emb|CCI12808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9806]
Length = 456
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 133/240 (55%), Gaps = 21/240 (8%)
Query: 28 TINEIAESV---NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++N++A+ + N + + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQNKGDISFSPDSLVSGINTDSRSI--KSGQAFLALKGDNFNGHDFIDMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ ++ V N+ K VQ NTL + +A + RN +F+ ++ +
Sbjct: 64 IEKGAATLIVDQPVSVNYSKNIPLFLVQ-------NTLETYQQLAHWWRN-QFTIPVIAI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM G+
Sbjct: 116 TGSVGKTTTKELIASVLATQG-TVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGR 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA++ +P I V+ NVG +H+ LGS +A AK E+ ES + VLN D PL+
Sbjct: 175 GEIALLAQITQPTIAVITNVGTAHIGRLGSEAAIAEAKCELLSESPSSSIAVLNHDHPLL 234
>gi|350560706|ref|ZP_08929546.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782974|gb|EGZ37257.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 462
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 16/230 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T E+A +V G++ G + D+R +P+ F A+ G+ FD H+F+ PEL
Sbjct: 5 TAAELAGAVAGRLHGDGMRSFRGVSRDSRASSPDA--LFVALRGERFDGHDFVRPEL--N 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
V ++ ++ + + V +T +L + + R +R + +V +TGS GK+T
Sbjct: 61 AAVLLVERRLDDPRPQVVVD-------DTTGALARLGTFWR-ARCTARVVALTGSNGKTT 112
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M+ L +G +V + GN NN +GV L+L+ + +VD AV+EMG + GEI L R
Sbjct: 113 TKEMLRSILSRVG-SVHATAGNLNNHIGVPLTLLAMPPSVDYAVIEMGANHAGEIAFLTR 171
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKL-GDVCVLNADD 254
+ RP++ ++ N G +HL+ GSLE VARAK EI++ G V+N DD
Sbjct: 172 LTRPDVALITNAGRAHLDGFGSLEGVARAKAEIYEGLPAGGGTAVINLDD 221
>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
saanensis SP1PR4]
gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
saanensis SP1PR4]
Length = 471
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 126/241 (52%), Gaps = 10/241 (4%)
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQVEGNGNVNTLNSLV 119
+ FFA+ G+ FD HEF+ L V+ + V D + +G L++L
Sbjct: 38 ELFFAVMGERFDGHEFVKTALEAGAVAAVVSMRWVVSAEVDPCKLLRVPDGEDCVLSALQ 97
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A R S + G ++GVTGS GK+TTK +A L + V +S GN NN GV L L+
Sbjct: 98 KLAREVRKS-WGGRVIGVTGSAGKTTTKECVAAVLAA-KFKVLKSAGNLNNHFGVPLQLL 155
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LEDVARAKGEI 238
+++ +AV+EMGM+ GEI LA++A P+ VV NV HLE +E +ARAK E+
Sbjct: 156 RLEKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFADGMEGIARAKKEL 215
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVL 297
V LNADD V+ T G FG DVR V +V N GL G+Q V+
Sbjct: 216 VDALPAAGVAFLNADDVFVS--TFGEGHEARMFGLSETADVRGV--EVKNVGLEGMQFVV 271
Query: 298 E 298
+
Sbjct: 272 Q 272
>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor owensensis OL]
gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor owensensis OL]
Length = 448
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 136/235 (57%), Gaps = 13/235 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG+I + I+ + + + N KN F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKALNGEIKNFSDD-ILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + N +V+V+ +TL +L ++A Y R+ ++GVTGSVGK
Sbjct: 61 N-GAISFISQKEFKNVRVPYVKVK-----DTLVALQDLASYVRDKLKGLTVIGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L + F++ GN+NN +G+ S++ + IAV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-NYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNADDPLV 257
+++A+P+I V+ N+G +H+E+L S ++ AK EI Q+ D + ++N D+ ++
Sbjct: 174 SQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEI-QDGMADDGMLIINNDNDIL 227
>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ethanoligenens harbinense YUAN-3]
gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ethanoligenens harbinense YUAN-3]
Length = 456
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 14/249 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ G FD + ++ + KG + + C W V
Sbjct: 29 VSTDTRTIRPGS--LFIALRGARFDGNAYLKTA-FEKGASIALAERPCPGWPVVLV---- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ + A RFS +VGVTGSVGK++TK MI ++ S ++ GN
Sbjct: 82 ----DDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMI-FSVLSQAFRTLKNEGNL 136
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +S+ G++R + AV EMGMS GEI L+++A P+I V+ N+G SH+E LGS
Sbjct: 137 NNLIGMPMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVITNIGVSHIEMLGSQ 196
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++ +AK EI + G +LN DDPL+A + + + GC A +V +
Sbjct: 197 ENILKAKLEILDGMRPGGKLILNGDDPLLAGVQTDKAEVITYGIENTGC--AYTAEEVES 254
Query: 289 GGLGVQVVL 297
G G L
Sbjct: 255 GAEGTAFCL 263
>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 458
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--KKGNLYVPIQGERFDGHGFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLAAETVTFGDARAND 253
>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 509
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 18/262 (6%)
Query: 27 WTINEIAESVNGKILK---WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W N I ++ G+ + W I TDTR + K F A G++FD H F+ E +
Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIK--KGDLFIAFKGKNFDGHNFLH-EAF 60
Query: 84 GKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGS 140
KG + I V K F + V+ +TL +L +MA Y RN ++ VTGS
Sbjct: 61 LKGAIAAI---VSEGKYKSFPLIIVQ-----DTLKALHDMASYYIRNVLIDAKVIAVTGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L GV+ + GN NN +G+ L+++ + +LEMGM+ GEI
Sbjct: 113 VGKTTTKDMLHTVLSQYGVS-HANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
EL++++ P I V+ N+ +H E+ SL DVA+AK EI K VL+ D+ L
Sbjct: 172 KELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYL 231
Query: 261 TVPRGVRKVFFGWRRGCDVRLV 282
+ + FG + +V L+
Sbjct: 232 SSHANRNVISFGKDKNAEVCLL 253
>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea F0287]
gi|420158820|ref|ZP_14665632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea str. Holt 25]
gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea F0287]
gi|394763059|gb|EJF45205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea str. Holt 25]
Length = 444
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + KGE++ K ++ NAD+P+ L
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEAL 217
>gi|423578633|ref|ZP_17554744.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD014]
gi|423638227|ref|ZP_17613879.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD156]
gi|401220491|gb|EJR27124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD014]
gi|401271730|gb|EJR77735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD156]
Length = 458
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHGFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPEMNLAAETVTFGDARAND 253
>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Capnocytophaga ochracea DSM 7271]
gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Capnocytophaga
ochracea DSM 7271]
Length = 444
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + KGE++ K ++ NAD+P+ L
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEAL 217
>gi|423607942|ref|ZP_17583835.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
gi|401239516|gb|EJR45943.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
Length = 458
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMTNGTGLAQQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfococcus oleovorans Hxd3]
gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfococcus oleovorans Hxd3]
Length = 472
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 6/243 (2%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R L K F AI GQ D H+FI + +G GV+ +Q +
Sbjct: 24 ISIDSRTLG--KGDLFVAIQGQQHDGHDFID-RVLAQGAGGVMIDQAHASRINTPRATGR 80
Query: 109 NGNVNTLNSLVNMACYARNSRFS--GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
V +++V + AR+ R S + +TG+ GK++TK M A+ V + G
Sbjct: 81 GARVVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTKEMAAMVCGRR-YRVLATTG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+L+ +++ +A+LEMGM+ GEI LA++ P++ VVLNVG HLE +
Sbjct: 140 NFNNEIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICEPDMGVVLNVGAGHLEGVE 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+++ VARAK E+ + D ++NADD V + R V +G R+ D+ + +
Sbjct: 200 NIDGVARAKAELLEALTDKDTAIVNADDMRVMKMAQKVRGRVVTYGMRQKADITAASVRR 259
Query: 287 ANG 289
+G
Sbjct: 260 QDG 262
>gi|393778730|ref|ZP_10366992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, partial
[Capnocytophaga sp. oral taxon 412 str. F0487]
gi|392611493|gb|EIW94230.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, partial
[Capnocytophaga sp. oral taxon 412 str. F0487]
Length = 439
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNIKPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + KGE++ K ++ NAD+P+ L
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEAL 217
>gi|429755790|ref|ZP_19288420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 324 str. F0483]
gi|429172670|gb|EKY14214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 444
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + KGE++ K ++ NAD+P+ L
Sbjct: 185 EGVIKTKGELYDYLKAHHKTIIANADNPITEAL 217
>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 448
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 147/273 (53%), Gaps = 13/273 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA++VNG+ LK ++ + I + + K+ F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKAVNGE-LKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + ++ +V+V +TL +L ++A +AR +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFDDLKVPYVKVG-----DTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
RKV G + R Q G +V
Sbjct: 233 EFKRKVVTIGIENESNFRAQNVQKHQNGFSFEV 265
>gi|410452639|ref|ZP_11306603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus bataviensis LMG 21833]
gi|409934121|gb|EKN71037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus bataviensis LMG 21833]
Length = 459
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G+ +I A N F G+H D H+++ + + W K
Sbjct: 29 GVTIDSRKIKAGN---LFIPFKGEHADGHKYVVESIRNGAAAAL--------WQKDVPNA 77
Query: 107 EGNGNVNTLNS-LVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + ++ LV + AR R +VG+TGS GK+TTK M A L S NV +
Sbjct: 78 PADLPIIIVDDCLVALQELARKYRQELPVKVVGITGSNGKTTTKDMTA-GLLSTQYNVQK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++G++ DIAVLEMGMSG+GEI L ++A P+ ++ N+G+SHL
Sbjct: 137 TEGNYNNHIGLPLTVLGLNEDTDIAVLEMGMSGRGEIEFLTKLACPDAVIITNIGESHLL 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK EI Q + G + VL+ D+PL+
Sbjct: 197 DLGSREGIAEAKLEILQGLRDGGLAVLHGDEPLL 230
>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
aggregans DSM 9485]
gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
aggregans DSM 9485]
Length = 487
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 30/280 (10%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-----VCNNWD- 100
G + D+R + P F A+TG+ D H ++ P++ +G + + + +W
Sbjct: 32 GPVVVDSREVTPGS--LFVALTGERTDGHLYL-PDVVERGAAAALVSPAKLAALAPDWSA 88
Query: 101 --KGFVQVE-GNGNV---------------NTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ + +E +G+ + L +L A Y R F+ ++G+TGSVG
Sbjct: 89 VARPWRLIEPSDGSALATVPPEACLFIAVDDPLCALQRAAVYHRRM-FTPTVIGITGSVG 147
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK ++A A+ S + +S ++N+ + + +L+G+ +AVLEMGM GEI
Sbjct: 148 KTSTKEVVA-AVISQRLRTLKSQRSFNSDITLPATLLGLTADHQVAVLEMGMWAAGEIRF 206
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +ARP I +V NVG SHLE LGS+E +A AK E+ + C+LNADDP VA +
Sbjct: 207 LAALARPHIGIVTNVGPSHLERLGSIEAIANAKAELPESLPPDGWCILNADDPRVAAMAK 266
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
V +G+ DVR V +++G G+++ + + E
Sbjct: 267 RTPAHVVTYGFAPHADVRAVEV-ISHGLYGIELTVSYQGE 305
>gi|359398447|ref|ZP_09191466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium pentaromativorans US6-1]
gi|357600138|gb|EHJ61838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium pentaromativorans US6-1]
Length = 498
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 129/271 (47%), Gaps = 16/271 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
S +W IA +V G + D+R + P FFA+ G+ D H F+ +
Sbjct: 20 SALWDAVAIARAVKGTANAEFTVSGVEIDSRDVQPG--DLFFALKGESMDGHRFVE-MAF 76
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ V D + V+ +T +L + AR R G ++GVTGSVGK
Sbjct: 77 AKGAAAVV---VDRPVDGPHILVK-----DTTEALEKLGAAARQ-RARGPIIGVTGSVGK 127
Query: 144 STTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
+ K I AL+ S + +S ++NN VGV LSL + + EMGM+ GEI
Sbjct: 128 TGVKESIFAALDRSSRGDAHRSVKSYNNHVGVPLSLARMPSRARFGIFEMGMNHAGEIAA 187
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
L R RP + V+ + +H+E LGS E +A AK EIFQ + G V+ AD P L
Sbjct: 188 LTRQVRPHVAVITTIAPAHIEMLGSEEAIADAKAEIFQGLEEGGTAVIPADSPHFLRLRD 247
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
V G + V FG DVRL+ A GG
Sbjct: 248 AAVACGAKVVSFGKAADADVRLLDTVSAIGG 278
>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
watsonii WH 8501]
gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
watsonii WH 8501]
Length = 452
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 9/207 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVE 107
I TD+R + +N F A+ G FD H F+ E+ KG + +I N +V K Q+
Sbjct: 29 ISTDSRTI--QENDIFIALQGDKFDGHRFVD-EVIDKGAIALIVNHEVSVKSTKEIPQIV 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + +A + RN ++G+TGSVGK+TTK +IA L G NV ++ N
Sbjct: 86 VK---DTLIAYQEIANWWRN-HVKIPIIGITGSVGKTTTKEIIAAVLGVYG-NVHKTQAN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+G+ + AV+EM M GKGEI L+++A P I ++ NVG +H+ LGS
Sbjct: 141 YNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQIACPTIGIITNVGTAHIGRLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADD 254
+ +A AK E+ E V +LN DD
Sbjct: 201 RQAIAEAKCELLAEMPENSVAILNHDD 227
>gi|403238272|ref|ZP_10916858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. 10403023]
Length = 457
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 142/269 (52%), Gaps = 16/269 (5%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I E NG+ L ++ DTR ++P + I G+ F+ H+F +
Sbjct: 5 TLAQIKEMANGEKLDSQHENVVIEGVSIDTRTISPGN--LYIPIIGETFNGHQFAQAAIE 62
Query: 84 GKGCVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V V+ +Q D + V+ +TL +L +A R+S S ++G+TGS
Sbjct: 63 N-GAVAVLWGIDQPGPPQDVPVLFVK-----DTLEALQTLAKSYRDS-LSIKVIGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+A L S ++V ++ GN+NN +G+ L+++ + +AVLEMGMS GEI
Sbjct: 116 GKTTTKDMVASVL-STSMHVQKTEGNFNNHIGLPLTILRLKEDTQVAVLEMGMSAFGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +ARP++ V+ N+G+SH+ LGS E +A+AK EI + + + D+PL+
Sbjct: 175 FLTLLARPDVAVITNIGESHMMDLGSREGIAKAKLEIVDGLSKEGLLIYHGDEPLLTEQV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
++ FG + D ++ + N G
Sbjct: 235 KGMDIQTTTFGESKRNDFYPLSIKQENEG 263
>gi|51246753|ref|YP_066637.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Desulfotalea psychrophila LSv54]
gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
[Desulfotalea psychrophila LSv54]
Length = 1014
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 155/306 (50%), Gaps = 29/306 (9%)
Query: 7 PHTLACTSKTTF--RCPSNSPI--WTINEIAESVNGKIL--KWGPP--GIICTDTRILAP 58
P+ L T K F R + + WT +++ + G ++ P G + TD+R +
Sbjct: 518 PYQLGATGKKFFDDRLQAGRALASWTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSV-- 575
Query: 59 NKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSL 118
+ F A+ G++ D H ++ ++ G ++ + + V V +T +L
Sbjct: 576 GRGSIFVALRGENHDGHAYLD-QVVAAGAACLVVEKARPDLTCPQVLV-----ADTRRAL 629
Query: 119 VNMACYARNSRFSG----VLVGVTGSVGKSTTKSMIALALESL---GVN-----VFQSYG 166
+MA AR F+G V+VG+TGS GK+T K M A L SL G V ++ G
Sbjct: 630 GDMAA-ARRCAFAGTTKPVVVGITGSSGKTTIKEMTASILASLWPAGAEYPENVVLKTEG 688
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ LSL+ +D AVLEMGM+ GEI LA +A+P+I V NV +HL LG
Sbjct: 689 NFNNLIGLPLSLLPLDNMHRAAVLEMGMNSPGEIARLAEIAQPDICCVANVHAAHLSGLG 748
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S+E VARAK E+F + + + V+N DDP V + +K+ + + A+ +
Sbjct: 749 SIEGVARAKEELFAHAPVDSILVVNLDDPHVVEMAKGYEQKKICYSLSAAGSADIWASDL 808
Query: 287 ANGGLG 292
++G G
Sbjct: 809 SSGEAG 814
>gi|384049182|ref|YP_005497199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus megaterium WSH-002]
gi|345446873|gb|AEN91890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus megaterium WSH-002]
Length = 460
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 141/279 (50%), Gaps = 18/279 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++A + G + G + DTR + + + I G+ F+ H F+ +
Sbjct: 5 TLKQLAAMIPGSVFHSGNEAAVIEGVSIDTRTI--QQGNLYIPIKGERFNGHAFVDKAIE 62
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V + N+ N D + V+ +TL +L +A R+ +VG+TGS
Sbjct: 63 N-GAVATLWNKDEENPPTDISVILVD-----DTLEALQQLAKSYRH-ELDIKVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+ L++ V ++ GN+NN +G+ L+++ +D DIAVLEMGMS +GEI
Sbjct: 116 GKTTAKDMVKAVLDTT-YRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P++ ++ N+G+SHL+ LGS + +A AK EI V N D+PL+ +
Sbjct: 175 FLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEPLLTSRV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
V V FG D L + ++ LG + +E
Sbjct: 235 VNPVFETVTFGSSEQND--LYPSAISAEELGTTFTVSRE 271
>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1293]
gi|423577915|ref|ZP_17554034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-D12]
gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1293]
gi|401203961|gb|EJR10792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-D12]
Length = 458
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus ATCC 10987]
gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus H3081.97]
gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH187]
gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus Q1]
gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST26]
gi|375282336|ref|YP_005102771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus NC7401]
gi|384178161|ref|YP_005563923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|402554175|ref|YP_006595446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus FRI-35]
gi|423357188|ref|ZP_17334787.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus IS075]
gi|423376169|ref|ZP_17353483.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
gi|423572347|ref|ZP_17548554.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A12]
gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus ATCC 10987]
gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus H3081.97]
gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH187]
gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus Q1]
gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST26]
gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|358350859|dbj|BAL16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus NC7401]
gi|401075816|gb|EJP84185.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus IS075]
gi|401089160|gb|EJP97332.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
gi|401197714|gb|EJR04642.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A12]
gi|401795385|gb|AFQ09244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus FRI-35]
Length = 458
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLIAETVTFGDARAND 253
>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus bromii L2-63]
Length = 450
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 141/271 (52%), Gaps = 17/271 (6%)
Query: 27 WTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ EIA++ NG+ LK + D+R + F AI G+ D H+FI +
Sbjct: 4 FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQV--KNGSLFLAIKGERVDGHDFIE-K 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ +G V + + N K + V +TL+++ + A +F ++G++GSV
Sbjct: 61 CFAQGAVCALCEKAPENATKPCIVVP-----STLDAVKKIG-RAYREKFDIPVIGISGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ L S ++ GN NN +GV L+L+ + + AV+EMG+S GE+
Sbjct: 115 GKTSTKEMLYAVL-SQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMT 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ M +P I V+ +G+ HLE+LG + V +AK E+F+ ++ +LN DD ++ +
Sbjct: 174 RLSEMVQPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVK 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
G + VFFG D A + N G G
Sbjct: 234 TVNGKKPVFFGLDAKND--FYAKNIKNSGDG 262
>gi|431806061|ref|YP_007232962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Liberibacter crescens BT-1]
gi|430800036|gb|AGA64707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Liberibacter
crescens BT-1]
Length = 475
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 138/266 (51%), Gaps = 14/266 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTR-ILAPNKNQWFFAITGQHFDAHEFISP 80
S +W IN+ + G+I + I D+R I+A + FFAI G+ FD H++IS
Sbjct: 2 SCLWNINDFCLATKGRIFGDSSNDVNGISVDSRSIIAGDA---FFAIPGKRFDGHDYIST 58
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ K + V + + G V+V + +L +A AR R ++ +TGS
Sbjct: 59 AIMKKASLIVACEKRLSAL--GHVKVPVIIVDDVFAALNRLAVAAR-IRSKAKIIAITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M AL S+G ++NN +GV L+L + D V E+GM+ GEI
Sbjct: 116 VGKTTTKEMFRHALSSIG-KTHVPINSYNNFLGVPLTLARMPVDTDFGVFEIGMNHPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L ++ RP I V+ NVG++HL + ++++A AK EIF+ + VLN D+ +
Sbjct: 175 RSLVKLVRPHIAVITNVGNAHLGNFSGIDEIAAAKAEIFEGLEKQGSVVLNHDNDYFLFL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ + G+RK++ FG D RL+
Sbjct: 235 KQVALSSGIRKIYSFGQNPNSDFRLI 260
>gi|347530737|ref|YP_004837500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase [Roseburia
hominis A2-183]
gi|345500885|gb|AEN95568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase [Roseburia
hominis A2-183]
Length = 476
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 10/221 (4%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R++ + F I G D H+FI P ++ KG + V+ Q + ++ V+
Sbjct: 38 DSRLVG--EGYLFIPIRGARVDGHDFI-PAVFEKGALAVLSEQRLEHPAGPYILVD---- 90
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
+T ++ +A + R S +VG+TGSVGK++TK MIA L S V ++ GN NN
Sbjct: 91 -STEEAMKKIAAFYRRS-LDIKVVGITGSVGKTSTKEMIASVL-SEKYRVLKTEGNLNNE 147
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+G+ L++ I +AVLEMG+S GE+ LA MA+P+I V+ N+G HLE+L + + +
Sbjct: 148 IGLPLTIFKIREEHQVAVLEMGISEFGEMHRLAEMAQPDICVITNIGLCHLENLITRDGI 207
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+AK E F+ + VLN DD + + + G VF+G
Sbjct: 208 LKAKTESFEHLAPDGIAVLNGDDDKLCDKKMVNGRPAVFYG 248
>gi|423590491|ref|ZP_17566553.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD045]
gi|401220473|gb|EJR27107.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD045]
Length = 458
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E ++ AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAISEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP---RGVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 234 VPGMNLAAETVTFGDARAND 253
>gi|423370479|ref|ZP_17347886.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD142]
gi|401073950|gb|EJP82359.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD142]
Length = 458
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLAAETVTFGDARAND 253
>gi|334140297|ref|YP_004533499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium sp. PP1Y]
gi|333938323|emb|CCA91681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium sp. PP1Y]
Length = 498
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 129/271 (47%), Gaps = 16/271 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
S +W IA +V G + D+R + P FFA+ G+ D H F+ +
Sbjct: 20 SALWDAVAIARAVKGTANAEFTVSGVEIDSRDVQPG--DLFFALKGESMDGHRFVE-MAF 76
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ V D + V+ +T +L + AR R G ++GVTGSVGK
Sbjct: 77 AKGAAAVV---VDRPVDGPHILVK-----DTTEALEKLGAAARQ-RARGPIIGVTGSVGK 127
Query: 144 STTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
+ K I AL+ S + +S ++NN VGV LSL + + EMGM+ GEI
Sbjct: 128 TGVKESIFAALDRSSRGDAHRSVKSYNNHVGVPLSLARMPSRARFGIFEMGMNHAGEIAA 187
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
L R RP + V+ + +H+E LGS E +A AK EIFQ + G V+ AD P L
Sbjct: 188 LTRQVRPHVAVITTIAPAHIEMLGSEEAIADAKAEIFQGLEEGGTAVIPADSPHFLRLRD 247
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
V G + V FG DVRL+ A GG
Sbjct: 248 AAVACGAKVVSFGKAADADVRLLDTVSAIGG 278
>gi|401564217|ref|ZP_10805129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC6]
gi|400189067|gb|EJO23184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC6]
Length = 467
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 8/258 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G++FD +F + L +I + + K + +G
Sbjct: 30 ITTDTRKI--SDGDLFIALRGENFDGADFAADALNKGAAAVLIAEPISDPVQKALKKAKG 87
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL + +A +A +F +V +TGS GK+TTK + A L G V ++
Sbjct: 88 AVLTVADTLTAYQAIA-HAWRIKFDIPVVAITGSNGKTTTKDLTAAVLSGRGA-VCRTAA 145
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P + +V NV + H+E LG
Sbjct: 146 NYNNEVGLPLTLLGITAEDSAAVVEIGMRGMGQIAALAPVAAPNVGIVTNVCEVHMELLG 205
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD--PLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD GVR + +G DVR A
Sbjct: 206 SIENIAKAKAELVEAIPAGGTVILNADDARVAAMRARAAEGVRVLTYGISADVDVRAEAL 265
Query: 285 QVANGGLGVQVVLEKERE 302
+ A G V ER
Sbjct: 266 RCAADGSQFMVTWANERH 283
>gi|420148920|ref|ZP_14656105.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 335 str. F0486]
gi|394754409|gb|EJF37799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 335 str. F0486]
Length = 444
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFTQEALAKGACYAVIDDPAYYIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + KGE++ K ++ NAD+P+ L
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEAL 217
>gi|423480371|ref|ZP_17457061.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-2]
gi|401148763|gb|EJQ56248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-2]
Length = 458
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDRAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R +VGVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVVGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLAAETVTFGDARAND 253
>gi|423364240|ref|ZP_17341733.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD022]
gi|401073131|gb|EJP81570.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD022]
Length = 458
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 23/253 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 18 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 71 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 123 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 240
Query: 266 VRKVFFGWRRGCD 278
V FG R D
Sbjct: 241 AETVTFGDARAND 253
>gi|423072779|ref|ZP_17061528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium hafniense DP7]
gi|361856394|gb|EHL08297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium hafniense DP7]
Length = 453
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 12/256 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI + GK+L P ++ TD+R + F + G+ DAH F+
Sbjct: 4 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKV--TDGSLFVPLKGEKADAHTFLHAAFAS 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + ++ ++ V+ +T +L +A R RFS +VG+TGS GK+
Sbjct: 62 GAAAALTQEHMRMEAEEAWIAVD-----STQLALQQIAAAYRQ-RFSIPVVGITGSAGKT 115
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M ALAL S G V ++ GN N+++G+ L + + AV+EMG+S GE+ LA
Sbjct: 116 TTKEMTALAL-SAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A P+ V+ N+G +H+ L + ++ R K I G V LN DDP++A L
Sbjct: 175 QVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT 234
Query: 265 GVRKVFFGWRRGCDVR 280
G VF+G CD R
Sbjct: 235 GYETVFYGTAPWCDFR 250
>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 7424]
gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 7424]
Length = 454
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 15/222 (6%)
Query: 40 ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----V 95
I+ P I TD+R + P + F A+ G FD HEF + KG +I ++ +
Sbjct: 24 IISKKPITGISTDSRYIKPG--EIFVALRGDKFDGHEFAEVAVE-KGATALILDKKLSVL 80
Query: 96 CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155
N F+ NTL + +A + RN +F ++ VTGSVGK+TTK +IA L
Sbjct: 81 STNEIPQFIVN------NTLKAYQQIAQWWRN-QFQIPIIAVTGSVGKTTTKELIAAVLS 133
Query: 156 SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215
+ G V +S GN+NN +GV +L+ +D V+EM M KGEI L + RP I V+
Sbjct: 134 TAG-KVHKSIGNYNNEIGVPKTLLELDHTHHYGVIEMAMRAKGEISLLTEITRPTIGVIT 192
Query: 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
NVG +H+ LGS E +A AK E+ + + +LN D+ L+
Sbjct: 193 NVGTAHIGRLGSQEAIAEAKCELLAQMSQDSIAILNHDNSLL 234
>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis Bt407]
gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis Bt407]
gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar berliner ATCC 10792]
Length = 454
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 23/253 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 14 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 67 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 118
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 119 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 236
Query: 266 VRKVFFGWRRGCD 278
V FG R D
Sbjct: 237 AETVTFGDARAND 249
>gi|386846710|ref|YP_006264723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-
-D-alanyl-D-alanine ligase [Actinoplanes sp. SE50/110]
gi|359834214|gb|AEV82655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-
-D-alanyl-D-alanine ligase [Actinoplanes sp. SE50/110]
Length = 463
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 129/269 (47%), Gaps = 20/269 (7%)
Query: 28 TINEIAESVNGKILKWGPP----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA G ++ G + D+R + P F A G+ D H+F P++
Sbjct: 5 TLAEIAAVTGGHLVNSDGSETVTGGVEYDSRRVGPGG--LFVAFAGEKADGHDF-GPKVV 61
Query: 84 GKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G GV+G + D G V VE + L +L +A +VG+TGS
Sbjct: 62 AAGAAGVLGTR-----DAGAPGVVVE-----DQLAALAKLAHEVLTRLPELTVVGLTGSS 111
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK + L LG V + G+ NN +G +++ R VLEMG G G I
Sbjct: 112 GKTTTKDYLGQLLSRLGPTVAPA-GSLNNELGFPYTVLQAGRETRFLVLEMGARGIGHIR 170
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +ARP I +VLNVG +HL GS+E ARAKGE+ + V VLNADDPLVA +
Sbjct: 171 YLTGIARPSIGLVLNVGAAHLGEFGSIEGTARAKGELVEALPADGVAVLNADDPLVAAMA 230
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
G R + G D+R V + G
Sbjct: 231 SRTGARVLRVGEAADADLRATGVTVDSAG 259
>gi|410658125|ref|YP_006910496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. DCA]
gi|410661115|ref|YP_006913486.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. CF]
gi|409020480|gb|AFV02511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. DCA]
gi|409023471|gb|AFV05501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. CF]
Length = 469
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 22/258 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+W +AE + GK+ +G D+R A ++ F AI G+ D H FI+
Sbjct: 1 MWNSGTMAEILGGKL--YGSASTYFKGCVIDSR--AASEGVLFAAIRGEKTDGHLFINKA 56
Query: 82 LYGKGCVGVIGNQVCNNW-------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL 134
G + + + + DK + V+ +TL +L ++A R + V+
Sbjct: 57 FQGGASIALAETRSLEEYGLPVIPADKAIIAVK-----DTLLALQDLARAWRET-LDPVV 110
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+G+TGS GK+TTK M A L + V ++ N NN +G+ L+++ +I VLEMGM
Sbjct: 111 IGITGSCGKTTTKDMTAAVL-AKSFKVHKNLENHNNEIGLPLTILNAPAGTEIMVLEMGM 169
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G G+I L + P + V+ N+G +HLE LGS E++A+AK E+ G + VLNA+D
Sbjct: 170 RGLGQIRALCDICSPSVAVITNIGTTHLELLGSQENIAKAKWELVAALSEGGIAVLNAED 229
Query: 255 PLVANLTVPRGVRKVFFG 272
N V+KVF+G
Sbjct: 230 AFSVNKAAAADVKKVFYG 247
>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens AM1]
gi|418061963|ref|ZP_12699786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens DSM 13060]
gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens AM1]
gi|373564478|gb|EHP90584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens DSM 13060]
Length = 487
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 129/267 (48%), Gaps = 15/267 (5%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
S++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 SDAPLWTPAALEAATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ ++ + V G G+ L+++ + AR +R +V
Sbjct: 58 RAALEKGAGAAVVAEARAKEFEGAGPVLAVPGEGDDPVLDAMRRLGLAAR-ARTGAAIVA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMLEDTRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDV 279
L+A+ R R + FG DV
Sbjct: 236 YERLLAHAQASRAGRVITFGEHAAADV 262
>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Xanthobacter autotrophicus Py2]
gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Xanthobacter autotrophicus Py2]
Length = 493
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 18/264 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ T+ E+ E+ G ++ P + I D+R L P FFAITG++ D H ++ L
Sbjct: 22 LHTVGEMVEA-TGAAVRGAPHDVTGISIDSRTLVPG--DAFFAITGENSDGHAYVEKALG 78
Query: 84 GKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V+ + + D + V+ + L +L ++A AR +V VTGSV
Sbjct: 79 AGAALCVVARDRADGFPADAPLLVVD-----DVLAALTDVARAARARS-KAQIVAVTGSV 132
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK + +AL + G S ++NN GV LSL R V E+GM+ GEI
Sbjct: 133 GKTTTKEALRIALGADG-ETHASAASYNNHWGVPLSLARFPREARYGVFEIGMNHPGEIT 191
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL- 260
L R+ RP + +V V H+ S+E++A AK EIF + G VLN D+PL L
Sbjct: 192 PLVRLVRPHVAIVTTVEPVHIAQFSSIEEIADAKAEIFDGVEPGGAAVLNLDNPLFDRLK 251
Query: 261 --TVPRGV-RKVFFGWRRGCDVRL 281
RG+ R V FG G DVRL
Sbjct: 252 AAAAARGISRIVSFGSGEGADVRL 275
>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
Length = 467
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 129/249 (51%), Gaps = 9/249 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVE 107
I TDTR L P F A+ G+ FDAH+F++ G V+ Q F E
Sbjct: 30 ISTDTRSLPPGC--LFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALPAIPGDFPLYE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A + R RF + V GS GK+TTK M+ L + G ++ GN
Sbjct: 88 ---VPDTLAALGALARFHRE-RFRIPVAAVGGSNGKTTTKEMVGAILATRG-PALKTEGN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN VGV L+L+ ++ + AV+E GM+ GEI L R+ +P+ ++ V HLE LGS
Sbjct: 143 LNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVVQPEHLEGLGS 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV- 286
LE VA A+GE+F+E V V+N DDPL+ +++ FG DVRL +
Sbjct: 203 LEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAKGRGKRLTFGRAESADVRLSQVETR 262
Query: 287 ANGGLGVQV 295
GLG+ V
Sbjct: 263 GREGLGLTV 271
>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 4222]
gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 4222]
Length = 454
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 23/253 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 14 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 67 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 118
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 119 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 236
Query: 266 VRKVFFGWRRGCD 278
V FG R D
Sbjct: 237 AETVTFGDARAND 249
>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|384184308|ref|YP_005570204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410672596|ref|YP_006924967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Bacillus thuringiensis Bt407]
gi|423387288|ref|ZP_17364542.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-2]
gi|423526473|ref|ZP_17502918.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB1-1]
gi|452196602|ref|YP_007476683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401629251|gb|EJS47076.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-2]
gi|402456267|gb|EJV88043.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB1-1]
gi|409171725|gb|AFV16030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Bacillus thuringiensis Bt407]
gi|452101995|gb|AGF98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 458
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 23/253 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 18 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 71 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 123 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 240
Query: 266 VRKVFFGWRRGCD 278
V FG R D
Sbjct: 241 AETVTFGDARAND 253
>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
Length = 518
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 129/249 (51%), Gaps = 9/249 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVE 107
I TDTR L P F A+ G+ FDAH+F++ G V+ Q F E
Sbjct: 81 ISTDTRSLPPGC--LFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALPAIPGDFPLYE 138
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A + R RF + V GS GK+TTK M+ L + G ++ GN
Sbjct: 139 ---VPDTLAALGALARFHRE-RFRIPVAAVGGSNGKTTTKEMVGAILATRG-PALKTEGN 193
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN VGV L+L+ ++ + AV+E GM+ GEI L R+ +P+ ++ V HLE LGS
Sbjct: 194 LNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVVQPEHLEGLGS 253
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV- 286
LE VA A+GE+F+E V V+N DDPL+ +++ FG DVRL +
Sbjct: 254 LEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAKGRGKRLTFGRAESADVRLSQVETR 313
Query: 287 ANGGLGVQV 295
GLG+ V
Sbjct: 314 GREGLGLTV 322
>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 458
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 128/251 (50%), Gaps = 13/251 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG-VIGNQVCNNWDKGFVQVE 107
I TDTR + K F A+ G+ FD H+F+ E + KG V V+ N+ VQ
Sbjct: 29 ISTDTR--SIKKGDLFIALKGKKFDGHDFLH-EAFLKGAVAAVVSEDKYRNFPLIIVQ-- 83
Query: 108 GNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL +L NMA Y RN + ++ +TGSVGK+TTK M+ L GV+ G
Sbjct: 84 -----DTLKALHNMASYYIRNILVNAKVITITGSVGKTTTKDMLNTVLLHYGVSHVNE-G 137
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +G+ +++ +LE+GMS GEI EL++++ P+I V+ N+ +H+E+
Sbjct: 138 NLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKISNPDIAVITNIEPAHVENFS 197
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
SL D+A+AK EI K VLN D+ L V FG V L+
Sbjct: 198 SLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSNANRNVVSFGKNESATVCLLELIR 257
Query: 287 ANGGLGVQVVL 297
+ GL +++ L
Sbjct: 258 DDNGLNLKIKL 268
>gi|374324851|ref|YP_005077980.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Paenibacillus terrae HPL-003]
gi|357203860|gb|AET61757.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Paenibacillus terrae HPL-003]
Length = 467
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 18/238 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF-VQVE 107
+ TD+R P F +TG+ FD H ++ + G+G + W K
Sbjct: 29 VFTDSR--KPQAQGLFVPLTGERFDGHNYVQQIVSGEGAAAFL-------WQKDHGAPPA 79
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
GN A R +GV +VG+TGS GK+TTK ++ AL V ++ G
Sbjct: 80 GNAIEVDDTLAALQRLAAAYLRETGVSVVGITGSNGKTTTKDIVN-ALLGTTFKVHKTEG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ + + DI +LEMGMSG+GEI L +A+P++ V+ N+G+SHL LG
Sbjct: 139 NYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEISLLTDIAQPDVAVITNIGESHLLQLG 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCD 278
S ++ARAK EI K + + N D+PL+ + P G++ FG D
Sbjct: 199 SRAEIARAKLEIVSGLKPDGLLIYNGDEPLLPQVLAEPETVKPDGLKLFTFGISADND 256
>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus G9842]
gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 200]
gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|402562679|ref|YP_006605403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-771]
gi|423565416|ref|ZP_17541692.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A1]
gi|434378872|ref|YP_006613516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-789]
gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus G9842]
gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 200]
gi|401193995|gb|EJR00993.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A1]
gi|401791331|gb|AFQ17370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-771]
gi|401877429|gb|AFQ29596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-789]
Length = 458
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 23/253 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 18 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 71 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 123 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 240
Query: 266 VRKVFFGWRRGCD 278
V FG R D
Sbjct: 241 AETVTFGDARAND 253
>gi|443667841|ref|ZP_21134077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Microcystis aeruginosa DIANCHI905]
gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
gi|443330941|gb|ELS45625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Microcystis aeruginosa DIANCHI905]
Length = 454
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 138/242 (57%), Gaps = 25/242 (10%)
Query: 28 TINEIAE--SVNGKI-LKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++N++A+ S+ K + + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVLV 135
+ +G +I +Q V V + N+ NTL + +A + RN +F+ ++
Sbjct: 64 I-ARGAAALIVDQP--------VSVNYSSNIPVFLVKNTLKTYQQLAHWWRN-QFTIPVI 113
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM
Sbjct: 114 AITGSVGKTTTKELIASVLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMR 172
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
G+GEI LA++A+P I V+ NVG +H+ LGS +A AK E+ ES + VLN D P
Sbjct: 173 GRGEIALLAQIAQPTIAVITNVGTAHIGRLGSESAIAEAKCELLSESPSSSIAVLNYDHP 232
Query: 256 LV 257
L+
Sbjct: 233 LL 234
>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
hygroscopicus ATCC 53653]
gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
himastatinicus ATCC 53653]
Length = 475
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 124/249 (49%), Gaps = 15/249 (6%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + P F A+ G+H D H++ + G V V+ + + D +
Sbjct: 29 GPVVIDSREVRPGS--LFAALPGEHVDGHDYARGAVEA-GAVAVLATRPVSTPDAPVPAL 85
Query: 107 EGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ + M AR R +V +TGS GK++TK +IA L+ G V+ +
Sbjct: 86 ------VVPDVVAAMGAIARAVVERLGTTVVALTGSAGKTSTKDLIAQLLQRHGPTVW-T 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
+G++NN +G+ L+ + D VLEMG GKG I L + P I +VLNVG +H+
Sbjct: 139 HGSFNNEIGLPLTALRADTTTQHLVLEMGARGKGHIRYLTDLTPPRIGLVLNVGTAHIGE 198
Query: 225 LGSLEDVARAKGEIFQ---ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
G E +A AKGE+ + ++ G V VLNADDPLV + R V FG VR
Sbjct: 199 FGGREQIAEAKGELVEALPSAEDGGVAVLNADDPLVRAMASRTKARTVLFGEAGDAHVRA 258
Query: 282 VAAQVANGG 290
++A+GG
Sbjct: 259 SNVRLADGG 267
>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 468
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 23/253 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 28 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 80
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 81 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 132
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 133 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 191
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 192 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 250
Query: 266 VRKVFFGWRRGCD 278
V FG R D
Sbjct: 251 AETVTFGDARAND 263
>gi|407796617|ref|ZP_11143570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Salimicrobium sp. MJ3]
gi|407019133|gb|EKE31852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Salimicrobium sp. MJ3]
Length = 449
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 27/240 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI-------GNQVCNNWDK 101
+ TDTR +P K F I G++FDAH F++ + G V + V N+
Sbjct: 28 VMTDTR--SPQKQSLFIPIAGENFDAHSFLNKAVEN-GAVATLWEKEKELPEDVPENFPV 84
Query: 102 GFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
FV+ +T+ ++ +A Y +N +V VTGS GK+TTK IA ++ +
Sbjct: 85 FFVE-------DTVKAMQTLAQNYIKN--VGPAVVAVTGSNGKTTTKD-IAASVLAQKFK 134
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
+ GN NN +GV L++ + ++AV+EMGM+ GEI L+ +ARP+ ++ N+G+S
Sbjct: 135 THHTEGNLNNHIGVPLTIFSMPEDTEVAVIEMGMNNAGEIEVLSNIARPDYAIITNIGES 194
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
H+E LGS +++A AK EI + G + + D+PL+ RGV G+R D R
Sbjct: 195 HIEQLGSRQNIAGAKMEITKGFHEGSSLIFDGDEPLL------RGVEGTACGFRDHVDQR 248
>gi|358451435|ref|ZP_09161869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Marinobacter manganoxydans MnI7-9]
gi|357224668|gb|EHJ03199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Marinobacter manganoxydans MnI7-9]
Length = 461
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P Q F A+ G++FD H F+ + KG VG++ + N Q+
Sbjct: 30 VSTDTRTLEPG--QLFVALRGENFDGHRFLQQAM-DKGAVGLVVDTPDTNL--ALPQLV- 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A + ++ +TGS GK+T K M A L +G + GN
Sbjct: 84 ---VNDTLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMG-KTLSTKGNL 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L G+ V+E+G SG GEI +A+P + ++ N G++HLE GS
Sbjct: 140 NNHIGVPLTLFGLSPEHQYGVIELGASGLGEIAHTVALAKPRVAILTNAGEAHLEGFGSY 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
E++ AKGEI + VLN DDP A G R+V R G +
Sbjct: 200 ENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRTRAGARRVAGVSRLGAE 249
>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-134-V-Col7a]
gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-049-V-Sch6]
gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-049-V-Sch6]
gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-134-V-Col7a]
Length = 452
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 135/261 (51%), Gaps = 24/261 (9%)
Query: 27 WTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ EI ++ +G L++ I TDTR + F A+ G FD H+FI+
Sbjct: 4 FTLQEIIDATSGTCKGDVSLQFKD---ISTDTRTIEAG--YVFVALRGDTFDGHDFINTA 58
Query: 82 LYGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ KG I G V G + VE NTL + ++A + R RF +V +T
Sbjct: 59 IE-KGATAAIVEKGRSV-----DGIICVEVE---NTLKAYQDLANFHRR-RFQIPVVAIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L S NV ++ N+NN +G+ +L+ + + V+EMGM G G
Sbjct: 109 GSSGKTTTKEMVAAVL-STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P I ++ NVG SH+E LGS E +A AKGE+ + V +LN DD V
Sbjct: 168 QIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHFVK 227
Query: 259 NLTVPRGVRKVFFGWRRGCDV 279
++ + V +G V
Sbjct: 228 AMSSIAEGKTVTYGIHSNATV 248
>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sinorhizobium medicae WSM419]
gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sinorhizobium medicae WSM419]
Length = 477
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 136/273 (49%), Gaps = 14/273 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLGAMNGRPVGNLPEGITGISIDSRTI--GNGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V+ + + +V L +++ + C AR+ R + ++ VTGSVGK
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVDDV--LEAMIRLGCAARD-RSAAKIIAVTGSVGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEI L
Sbjct: 119 TTTKEMLRHMLSPLG-RVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEIRPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
RM RP + VV ++ +HL + SL+D+A AK EIF+ G V+N D L+
Sbjct: 178 TRMVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELLEKA 237
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLG 292
GV V FFG + RL A+ A G G
Sbjct: 238 AATAGVSHVHFFGANPKSEFRL--AEFAGGAEG 268
>gi|402496896|ref|YP_006556156.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
of Onchocerca ochengi]
gi|398650169|emb|CCF78339.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
of Onchocerca ochengi]
Length = 497
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 14/260 (5%)
Query: 27 WTINEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W + I ++ NG+ W I DTR + K F A+ G++FD H+F+
Sbjct: 4 WNASNIIDATNGREESSCNWMHSSNISIDTR--SIKKGDIFIALKGKNFDGHDFLHDAFL 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACY-ARNSRFSGVLVGVTGSVG 142
V ++ N+ VQ +T +L +MA Y RN + ++ +TGS+G
Sbjct: 62 KGATVAIVSKNKYKNFPLIIVQ-------DTFKALHDMASYYVRNVLANAKIIAITGSIG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M+ + L GV+ + + GN NN +G+ L+++ +LEM M+ GEI +
Sbjct: 115 KTTTKDMLHIVLSQYGVS-YVTEGNLNNNIGLPLTVLRAPENCQYLILEMAMNKVGEIKK 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L++++ P+I ++ NV +H+E+ SL D+A+AK E+ K VLN D L
Sbjct: 174 LSKISNPDIAIITNVEPAHVENFSSLFDIAQAKLEVLHGMKTKGTLVLNKDSKYYNYLLS 233
Query: 263 PRGVRKVFFGWRRGCDVRLV 282
V FG + V L+
Sbjct: 234 HANRNIVSFGKDKNATVCLL 253
>gi|345859007|ref|ZP_08811378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Desulfosporosinus sp. OT]
gi|344327880|gb|EGW39287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Desulfosporosinus sp. OT]
Length = 453
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I + GK+L P ++ TD+R +A F + G+ DAH F+
Sbjct: 3 MTVQKIVAACGGKLLCGNPDTLVTSVVTDSREVA--GGSLFVPLKGEKTDAHTFLHAAFA 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ ++ ++ V+ +T +L N+A R RF +VG+TGSVGK
Sbjct: 61 SGAATVLTQEHTQTEAEEAWIAVD-----STQPALQNIAAAYRQ-RFPIPVVGITGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ALAL + V ++ GN N+++G+ L + + AV+EMG+S GE+ L
Sbjct: 115 TTTKEMVALALAAR-YKVMKTRGNHNSQIGLPLMMFEFSGEHEAAVVEMGISDFGEMACL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A P+ V+ N+G +H+ L + E++ K I G V LN DDP++A L
Sbjct: 174 ARVAEPKYAVMTNIGITHIGQLKTQENILGEKLHITDRFTQGSVLFLNGDDPMLAGLRGK 233
Query: 264 RGVRKVFFGWRRGCDVR 280
VF+G CD R
Sbjct: 234 TTYETVFYGRAPWCDFR 250
>gi|414174965|ref|ZP_11429369.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Afipia
broomeae ATCC 49717]
gi|410888794|gb|EKS36597.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Afipia
broomeae ATCC 49717]
Length = 478
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 17/268 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++P+WT +A+++ P I I D+R L P + +FAI G D H+F+
Sbjct: 2 SAPLWTSTAMAKAMQASTRGALPDAITGISIDSRTLTPG--EAYFAIKGDVHDGHDFVEA 59
Query: 81 ELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L + V+ + + D + V+ + L LV++ AR +R G ++ VT
Sbjct: 60 ALKNGAGLAVVSKAHADKFAPDARLLVVD-----DVLAGLVDLGRAAR-ARLGGKVIAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++TK + L + G S ++NN GV L+L + A+ E+GM+ G
Sbjct: 114 GSVGKTSTKEALRAVLGAQG-ETHASVASFNNHWGVPLTLARCPASSRFAIFEIGMNHAG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +M RP + ++ V HLE +E +A AK EIF + G VLN D+P A
Sbjct: 173 EIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFLGVEPGGAVVLNRDNPQFA 232
Query: 259 NLT----VPRGVRKVFFGWRRGCDVRLV 282
LT + R V FG D RL+
Sbjct: 233 RLTKSAKAAKIERIVSFGSDEKADARLI 260
>gi|348169464|ref|ZP_08876358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Saccharopolyspora spinosa NRRL 18395]
Length = 488
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 20/269 (7%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ +IAE+V G++ + I+ D+R + P F A+ G+ D H+F + +
Sbjct: 5 SLADIAEAVGGRLHRAESSEIVSAGVEFDSRKIEPGG--LFVAVPGERVDGHDFAA-QAV 61
Query: 84 GKGCVGVIGNQVCN---------NWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSG 132
G VGV+ + + + +G + + G+ + + L +A AR+ R
Sbjct: 62 ANGAVGVLAAREVDAPAVIVPPVSSKRGALALAGDVDGSGAAVLAGLAKLARHVVDRLPQ 121
Query: 133 V-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLE 191
+ +VGVTGS GK++TK +IA LE +G V G++NN +G +++ D VLE
Sbjct: 122 LTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPP-GSFNNELGHPWTVLRADEGTRHLVLE 180
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLN 251
+ G G I L +A P I VLNVG +HL GS E VA+AKGE+ + V VLN
Sbjct: 181 LSARGVGHIANLCEVAPPRIGAVLNVGHAHLGEFGSQEAVAQAKGELVEALPADGVAVLN 240
Query: 252 ADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
ADDPLVA + R VF G VR
Sbjct: 241 ADDPLVAAMADRTKARVVFVGESPDAHVR 269
>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Desulfobacca acetoxidans DSM 11109]
gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
acetoxidans DSM 11109]
Length = 463
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 148/266 (55%), Gaps = 18/266 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S ++++ +I G++L+ G G + TD+R + F + G+ FD H+FI
Sbjct: 2 SAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSR--TAQAGEIFIPLRGERFDGHDFIDR 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMA-CYARNSRFSGVLV 135
+ +G ++ + W + Q + + TL +L ++A C+ RFSG ++
Sbjct: 60 AIK-RGVRALVAAEAW--WQRQNHQFPKDLTIVLVPETLRALGDLAHCW--RQRFSGPVI 114
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGS GK+TTK MIAL L S V ++ N NN +G+ +L+ ++ + AV+EMGM+
Sbjct: 115 AITGSCGKTTTKEMIALVLASR-FRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMN 173
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI LA++ARP+I VV NV +HLE LGSLE VA+AK E+ Q + + + NADD
Sbjct: 174 HFGEIRRLAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADDQ 233
Query: 256 -LVANLTVPRGVRKVFFGWRRGCDVR 280
L A L +G + + FG+ G ++
Sbjct: 234 RLRAALHHFKG-QTLSFGFDPGAQIQ 258
>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius 653-L]
gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius 653-L]
Length = 467
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 12/219 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R P+ F AI G++ D H++I Y GC + +Q + D Q++G
Sbjct: 34 IVIDSRQAGPD--TMFIAIIGENTDGHKYIKSA-YDLGCRTFMVSQELDILD----QLDG 86
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ V NT ++ +A Y +N +F +VG+TGSVGK+TT+ M+ A+ S ++
Sbjct: 87 SSIVCVDNTELAMGQLAKYYKN-KFDIPVVGITGSVGKTTTRDMV-YAVVSNKFRTLKNE 144
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN+ GV L++ +D + + AV+EMGMSG GEI LA + RP+I V+ N+G SH+E L
Sbjct: 145 KNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHL 204
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
GS E + +AK EI ++N DD ++ L +
Sbjct: 205 GSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKLRAEK 243
>gi|429727321|ref|ZP_19262095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius VPI 4330]
gi|429152773|gb|EKX95583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius VPI 4330]
Length = 467
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 12/219 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R P+ F AI G++ D H++I Y GC + +Q + D Q++G
Sbjct: 34 IVIDSRQAGPD--TMFIAIIGENTDGHKYIKSA-YDLGCRTFMVSQELDILD----QLDG 86
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ V NT ++ +A Y +N +F +VG+TGSVGK+TT+ M+ A+ S ++
Sbjct: 87 SSIVCVDNTELAMGQLAKYYKN-KFDIPVVGITGSVGKTTTRDMV-YAVVSNKFRTLKNE 144
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN+ GV L++ +D + + AV+EMGMSG GEI LA + RP+I V+ N+G SH+E L
Sbjct: 145 KNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHL 204
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
GS E + +AK EI ++N DD ++ L +
Sbjct: 205 GSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKLRAEK 243
>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium DSM 319]
gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium DSM 319]
Length = 460
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 18/279 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++A + G + G + DTR + + + I G+ F+ H F+ +
Sbjct: 5 TLTQLATMIPGSVFHSGNEATVIEGVSIDTRTI--QQGNLYIPIKGERFNGHAFVHKAIE 62
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G + + N+ N D + V+ +TL +L +A R+ +VG+TGS
Sbjct: 63 N-GALATLWNKDEENPPTDISVILVD-----DTLEALQQLAKSYRH-ELDIKVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+ L++ V ++ GN+NN +G+ L+++ +D DIAVLEMGMS +GEI
Sbjct: 116 GKTTAKDMVKAVLDT-TYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P++ ++ N+G+SHL+ LGS + +A AK EI V N D+PL+ +
Sbjct: 175 FLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEPLLTSRV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
V V FG D L + ++ LG + +E
Sbjct: 235 VNPVFETVTFGSSEQND--LYPSAISAEELGTTFTVSRE 271
>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfitobacterium hafniense DCB-2]
gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfitobacterium hafniense DCB-2]
Length = 453
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 12/256 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI + GK+L P ++ TD+R + F + G+ DAH F+
Sbjct: 4 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKV--TDGSLFVPLKGEKADAHTFLHAAFAS 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + ++ ++ V+ +T +L +A R RFS +VG+TGS GK+
Sbjct: 62 GAAAALTQEHMRMEAEEAWIAVD-----STQLALQQIAAAYRQ-RFSIPVVGITGSAGKT 115
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M ALAL S G V ++ GN N+++G+ L + + AV+EMG+S GE+ LA
Sbjct: 116 TTKEMTALAL-SAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A P+ V+ N+G +H+ L + ++ R K I G V LN DDP++A L
Sbjct: 175 QVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT 234
Query: 265 GVRKVFFGWRRGCDVR 280
G VF+G CD R
Sbjct: 235 GYETVFYGRLPWCDFR 250
>gi|414343297|ref|YP_006984818.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconobacter oxydans
H24]
gi|411028632|gb|AFW01887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Gluconobacter oxydans H24]
Length = 458
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL- 82
S +WT E+ ++ +G + I DTR L P F A+ G+ D HE I+ L
Sbjct: 2 SALWTSQELRDATHGTLAADVSVTGISIDTRTLKPG--DLFIALKGETSDGHEHIAQALE 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G CV V Q + D + V NT+ L + YARN RF G ++ VTGSVG
Sbjct: 60 AGAACVMVHDTQ--GSTDPRLLIV-----ANTMRGLEALGRYARN-RFDGKVIAVTGSVG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M+ AL +LG + ++NN GV L+L + R + E+GM+ GEI
Sbjct: 112 KTTTKDMLRTALSALG-PTHAAVASYNNHWGVPLTLARLARDARFCISEVGMNHVGEIAP 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
LA RP I ++ +G +HL +GS+E++AR K +F
Sbjct: 171 LAAQVRPNIAIITTIGTAHLGHMGSVEEIAREKATLF 207
>gi|452995435|emb|CCQ92924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ultunense Esp]
Length = 457
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 22/235 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNW-DKGFV 104
+ TDTR L P F ++G+ FD H+F+ E + KG V G + + D +
Sbjct: 14 LSTDTRTLLPG--TLFVPLSGERFDGHDFVE-EAFAKGAVSSFWRRGKSIPQSLVDAPLI 70
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
VE + L ++ ++ R +G +++G+TGS GK+TTK +I L+ V
Sbjct: 71 LVE-----DPLTAMQELSSTYRQE--AGCLIIGITGSNGKTTTKDLITSLLKER-YRVHA 122
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN++G+ L+L+ + +IAV+EMGM+ GE+ L+R+A+P++ V+ N+G++HLE
Sbjct: 123 TEGNLNNQIGLPLTLLSMPEKTEIAVVEMGMNHFGELERLSRIAKPDMAVITNIGEAHLE 182
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR-KVFFGWRRGC 277
LG+ E +A AK EI + A++PL +P R K F G + C
Sbjct: 183 YLGTREGIATAKTEILSGMDERGILYYPAEEPL-----IPTASRFKAFTGKKISC 232
>gi|398354335|ref|YP_006399799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Sinorhizobium fredii USDA 257]
gi|390129661|gb|AFL53042.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
MurF [Sinorhizobium fredii USDA 257]
Length = 482
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 18/266 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGII--CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GII D+R +A K + FFAI G D H++ L
Sbjct: 4 LWTCSDLLAAMNGRPVGSLPDGIIGISIDSRTIA--KGEAFFAIRGDRVDGHDYAGLALA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGASLLVVSEGKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + D + E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGIFEIGMNHHGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + VV ++ +HL + SL+++A AK EIF+ G V+N D P L+
Sbjct: 175 RPLTAMVRPHVAVVTSIAAAHLGNFASLDEIASAKAEIFEGVVKGGHAVINRDSPQFDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLV 282
GV + FG + RL+
Sbjct: 235 ERAAAAAGVGHIHAFGANPKSEYRLI 260
>gi|227822655|ref|YP_002826627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
[Sinorhizobium fredii NGR234]
gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
[Sinorhizobium fredii NGR234]
Length = 477
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 134/266 (50%), Gaps = 18/266 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGII--CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GII D+R +A K + FFAI G D H++ L
Sbjct: 4 LWTCSDLLAAMNGRPVGNLPEGIIGISIDSRTIA--KGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGASLLVVSEGKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + + + E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + VV ++ +HL + SL+++A AK EIF+ G V+N D P L+
Sbjct: 175 RPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLV 282
V GV + FG + RL+
Sbjct: 235 ERAAVAAGVSHIHSFGANPKSEYRLI 260
>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
tetani E88]
gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
tetani E88]
Length = 459
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 139/244 (56%), Gaps = 16/244 (6%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ EI ++V+G+IL G I TDTR + + F A+ G+ F+ +E+ +
Sbjct: 5 SLEEIVKAVSGEILIKGNELGWEYISTDTRKI--EEKAIFIALKGERFNGNEY-TASASQ 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG I ++V + +++ V +T +L+++A Y + S+ +V +TGS
Sbjct: 62 KGAFICIVDEVHFKKE----EIKDYTTVIKVKDTSEALLDLAKYYK-SKLEVKVVAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK + A L VF++ GN+NN +G+ L + +D+ DIAVLEMGMS GEI
Sbjct: 117 TGKTSTKDLTASVL-GAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
++A+ A P+I ++ N+G SH+E+L S +++ +AK EI ++ ++N +D L+ NL
Sbjct: 176 HKMAKTALPDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNL 235
Query: 261 TVPR 264
+
Sbjct: 236 KEEK 239
>gi|428220294|ref|YP_007104464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 7502]
gi|427993634|gb|AFY72329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 7502]
Length = 480
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 119/212 (56%), Gaps = 8/212 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L FFA+ G+ FD H+F++ + G V + N+ N +G
Sbjct: 48 ISTDTRTL--ETGDLFFALAGESFDGHKFVAKAI-SSGAVAAVVNETWFNNSSNNENAQG 104
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
V + LN+ N+A + R S+ ++ +TGS GK+TTK +I+ L G V +S
Sbjct: 105 TFLVVKDVLNAYQNLATWWR-SQCKLPVIAITGSAGKTTTKEIISQLLSFYG-RVHKSAA 162
Query: 167 NWNNRVGVALSLIGID-RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN +GVA +L+ ID + D V+EMGM GKGEI L+++A P++ V+ N+G +H+ L
Sbjct: 163 NHNNDIGVAQTLLRIDPQHHDFVVVEMGMRGKGEIARLSQVAAPDVAVITNIGTAHIGRL 222
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS + +A AK E+ V VLN +D L+
Sbjct: 223 GSQQAIAEAKCELLAYLPTSSVAVLNGEDQLL 254
>gi|352090513|ref|ZP_08954562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 2APBS1]
gi|351676886|gb|EHA60038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 2APBS1]
Length = 460
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F AI G+ D H++++ E +G V + V D QV
Sbjct: 25 VAIDTRRLEPG--DLFVAIKGERADGHDYLA-EAATRGAVAAL---VTRKVDSALPQVLV 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L + RN R +VG+TGS GK+T K+++A L G S GN+
Sbjct: 79 GSTELALGDLASAVRAQRNVR----VVGITGSNGKTTVKTLVASILARHG-RTHVSAGNF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ LSL+ + + AV EMG G+I LA +ARP+I +V + +HL +GS+
Sbjct: 134 NNELGLPLSLLAMPPDTEYAVFEMGAGKPGDIAYLAAIARPDIGLVTLIAPAHLARMGSI 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
E VA KG ++Q V ++NADD + T G RKV FG + D+
Sbjct: 194 EGVAETKGALYQALPADGVAIINADDAFASFFTGLAGARKVLRFGLEQPADI 245
>gi|389797165|ref|ZP_10200208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 116-2]
gi|388447539|gb|EIM03539.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 116-2]
Length = 460
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F AI G+ D H++++ E +G V + V D QV
Sbjct: 25 VAIDTRRLEPG--DLFVAIKGERADGHDYLA-EAATRGAVAAL---VTRKVDSALPQVLV 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L + RN R +VG+TGS GK+T K+++A L G S GN+
Sbjct: 79 GSTELALGDLASAVRAQRNVR----VVGITGSNGKTTVKTLVASILSRHG-RTHVSEGNF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ LSL+ + + AV EMG G+I LA +ARP+I +V + +HL +GS+
Sbjct: 134 NNELGLPLSLLAMPPDTEYAVFEMGAGKPGDIAYLAAIARPDIGLVTLIAPAHLARMGSI 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
E VA KG ++Q V ++NADD + T G RKV FG + D+
Sbjct: 194 EGVAETKGALYQALPADGVAIINADDAFASFFTGLAGARKVLRFGLEQPADI 245
>gi|385330301|ref|YP_005884252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Marinobacter adhaerens HP15]
gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinobacter
adhaerens HP15]
Length = 462
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P Q F A+ G++FD H F+ + KG VG++ + N Q+
Sbjct: 31 VSTDTRTLEPG--QLFVALRGENFDGHRFLQ-QAMDKGAVGLVVDTPDTNL--ALPQLV- 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A + ++ +TGS GK+T K M A L +G + GN
Sbjct: 85 ---VNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMG-KTLSTKGNL 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L G+ V+E+G SG GEI +A+P + ++ N G++HLE GS
Sbjct: 141 NNHIGVPLTLFGLSPEHQYGVIELGASGLGEIAHTVALAKPRVAILTNAGEAHLEGFGSY 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
E++ AKGEI + VLN DDP A G R+V R G +
Sbjct: 201 ENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRSRAGARRVAGVSRLGAE 250
>gi|440699680|ref|ZP_20881975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Streptomyces turgidiscabies Car8]
gi|440278053|gb|ELP66114.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Streptomyces turgidiscabies Car8]
Length = 466
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 17/269 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGIICT-----DTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ +A +V G++ P + T D+R + P F A+ G+H D H F +
Sbjct: 4 LSLEAVASAVGGRLCDVPDPSALMTAPAVVDSRTVEPGG--LFAALPGEHTDGHAFAANA 61
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ G V V+ + V V+ + L++L +A ++G+TGS
Sbjct: 62 VKA-GAVAVLAARPVGVP---AVVVD-----DVLDALAALARTVLAEVPEATVIGLTGSA 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK +IA L LG + + ++N +G+ L++ + + V VLEMG G G I
Sbjct: 113 GKTSTKDLIAQVLPELGPTI-ATVKSFNGEIGMPLAVTHLGQDVRYIVLEMGARGIGHIT 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L R+A P + +VLNVG +H+ G E +A+AKGE+ + + +LNADDPLVA +
Sbjct: 172 HLTRIAPPSVGLVLNVGTAHVGEFGGREQIAQAKGELVEALPTAGLAILNADDPLVAAMA 231
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
R + FG DVR +A V G
Sbjct: 232 SRTSARVLTFGVDNDADVRALAVTVDASG 260
>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 455
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 136/284 (47%), Gaps = 23/284 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
W N I ++ G+ G G I TDTR + K F A+ G++FD H+F+
Sbjct: 4 WNTNNIIDATGGR----GKSGCHNLNISTDTRNIK--KGDLFIALKGKNFDGHDFLHEAF 57
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSV 141
V+ N VQ +TL +L +MA Y RN + ++ +TGSV
Sbjct: 58 LKGAAAAVVSEDKYRNLPVIVVQ-------DTLKALHDMASYYIRNVLVNAEVIAITGSV 110
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L GV+ GN NN +G+ L+++ +LEMGM+ GEI
Sbjct: 111 GKTTTKDMLHTVLSQYGVSHVND-GNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIK 169
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL- 260
EL++++ P I V+ N+ H+E+ SL D+A+AK EI K +LN D+ L
Sbjct: 170 ELSKISNPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLL 229
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303
V R V V FG V L+ + GL +++ L + M
Sbjct: 230 SHVDRDV--VSFGRSESATVCLLNVIKNDKGLNLKIRLNNNQIM 271
>gi|337288493|ref|YP_004627965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfobacterium sp. OPB45]
gi|334902231|gb|AEH23037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfobacterium geofontis OPF15]
Length = 471
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 133/257 (51%), Gaps = 15/257 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR++ P FFA+ G+ FD HEF + KG G+ V + + KGF E
Sbjct: 32 ISTDTRVIKPG--YLFFALKGEKFDGHEFYKDAI-EKGAKGL----VISRFPKGFKIEEI 84
Query: 109 NGNV------NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ +TL +L ++A + R + + + V +TGS GK+TTK + + + S
Sbjct: 85 PKTISIILVKDTLKALGDLASFWR-GKLNSIFVAITGSCGKTTTKEL-SYNIISKFFKTS 142
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ N+NN +GV L+L+ I ++ +LE+G + KGEI L+++ +P I V+ ++ +HL
Sbjct: 143 KNQANYNNLIGVPLTLLSIKEDTEVVILELGTNQKGEIERLSQIVKPHISVITSIYPAHL 202
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282
E L S+E V K +F+ + + + N D ++ P K+ FG+ D+ +
Sbjct: 203 EGLNSIEGVLEEKISLFKNTYKDGILIYNFDQEILRKRVEPFSQNKLSFGFDENADLSIK 262
Query: 283 AAQVANGGLGVQVVLEK 299
+ + +++ +K
Sbjct: 263 NLVFSENKIQGEIIFKK 279
>gi|387793372|ref|YP_006258437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Solitalea canadensis DSM 3403]
gi|379656205|gb|AFD09261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Solitalea canadensis DSM 3403]
Length = 433
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 14/234 (5%)
Query: 40 ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW 99
I K P +I TDTR +APN FFA+ G +F+A++F L VI +
Sbjct: 9 IYKEYP--VISTDTRKIAPNS--IFFALKGDNFNANQFAKQALESGAAYAVIDEEQYVQG 64
Query: 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
D+ ++ V+ N L +L +A + R S + ++G+TGS GK+T+K +I L S
Sbjct: 65 DR-YILVD-----NVLEALQQLAKFHR-SGLNIPVLGITGSNGKTTSKELINAVL-SQKF 116
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
+ + GN NN +GV L+L+ ID +VD A++EMG + + EI L+ +A P+ ++ NVG
Sbjct: 117 KTYATIGNLNNHIGVPLTLLAIDGSVDFAIIEMGANHQKEIQSLSSIADPDFGIITNVGR 176
Query: 220 SHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+HLE G E V + K E++ + V +N D+ + ++V + VF+G
Sbjct: 177 AHLEGFGGFEGVKKGKKELYDHILQRNGVIFVNQDNEFLVEMSVAHP-QIVFYG 229
>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens DM4]
gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens DM4]
Length = 487
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 15/266 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFIS 79
++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 3 DAPLWTPAALEAATGGRLI--GTPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFVR 58
Query: 80 PELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
L V+ ++ + V G G L+++ + AR +R ++ V
Sbjct: 59 AALEKGAGAAVVAEARAKEFEGAGPVLAVPGEGEDPVLDAMRRLGLAAR-ARTGAAIIAV 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHG 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 177 AEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNY 236
Query: 256 --LVANLTVPRGVRKVFFGWRRGCDV 279
L+A+ R R + FG DV
Sbjct: 237 ERLLAHAQASRAGRVITFGEHEAADV 262
>gi|373454597|ref|ZP_09546463.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Dialister succinatiphilus YIT 11850]
gi|371935872|gb|EHO63615.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Dialister succinatiphilus YIT 11850]
Length = 459
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 141/267 (52%), Gaps = 22/267 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ EI ++ +L+ G + TDTR ++ + + F A+ G++F+ HEF+ +
Sbjct: 4 FTLEEIEKATGASLLQKGEDAFVEGVSTDTRTIS--RGELFIALIGENFNGHEFLKRAVL 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ + D ++ + +V +T L ++A + R RF ++GVTG
Sbjct: 62 -SGASAVMISDASYGKD-----IDAHVSVFLVKDTKKGLEDLAHFHR-MRFQVPVIGVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + +V + N+NN +G++++L+ + ++ V+EMGM G G+
Sbjct: 115 SNGKTTTKDMITSILRTR-FHVTATEKNFNNEIGLSMTLLSMTAETEVCVVEMGMRGFGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL +A P + VV NVG SH+ LGS +++A+AK E+ +LN DD V+
Sbjct: 174 IAELCAIASPTMGVVTNVGTSHIGILGSQDNIAKAKKELIDALPADGTAILNGDDERVSV 233
Query: 260 LTVPRGVRKVFFGWR-----RGCDVRL 281
+ R V +G RG DVR
Sbjct: 234 MGKGFAGRIVRYGMNGRYTVRGSDVRF 260
>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
Length = 463
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 139/239 (58%), Gaps = 12/239 (5%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ ++I +V+GK++ K+ I TD+R L K F A+ G+ F+ +E++
Sbjct: 4 MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKL--QKGDIFIALKGEKFNGNEYVES-AS 60
Query: 84 GKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG I ++V +K F + N NT +L+ +A + R S+ ++GVTGSV
Sbjct: 61 KKGASICIVDEVKFESEKISEFTTIIKVQNGNT--ALLELAEFYR-SKLDVKIIGVTGSV 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK +IA L + VF++ GN+NN++G+ L +D + ++AVLEMGM+ +GEI
Sbjct: 118 GKTTTKDIIAAVL-GVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIH 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+ + ARP+I V+ NV +H+ +LGS +++ AK EI + ++N+D+ L++ L
Sbjct: 177 NMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTL 235
>gi|390562799|ref|ZP_10244968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrolancetus hollandicus Lb]
gi|390172627|emb|CCF84281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrolancetus hollandicus Lb]
Length = 463
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 20/281 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ T+ ++ E G +L + I D+R + P F A+ G+ D H+F+
Sbjct: 1 MITLRDVIEGTGGSLLGDADRDLLLRRIRHDSRQVEPG--DLFIAVVGERLDGHDFLGQA 58
Query: 82 L---YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ G V V VE NT+ +L ++A Y R + F +VG+T
Sbjct: 59 IERGAGAAMVDRAHAAALTGVPLPLVAVE-----NTVTALQHLAAYWRAT-FDVQVVGIT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS-GK 197
GSVGK++TK +IA L S N +S G++NN +G+ LSL+ I D VLE+G +
Sbjct: 113 GSVGKTSTKEVIAGVL-SQRFNTVRSPGSFNNEIGLPLSLLDITPDTDAVVLEIGGAYAP 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +ARP I VV NVG +HLE +GS+E +A K E+ V +LN DD V
Sbjct: 172 GEIKALAGIARPTIGVVTNVGHAHLERMGSIEAIAATKTELPASLPEDGVAILNGDDERV 231
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVL 297
+ R VF+G C VR A V + GL G+ +L
Sbjct: 232 RAMADHCRCRVVFYGLAPDCQVR--ATDVESHGLEGISFIL 270
>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. Fw109-5]
gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. Fw109-5]
Length = 460
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 133/257 (51%), Gaps = 14/257 (5%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
P ++ +E+A + G+ + P + + TDTR + P F A+ G+ FD H ++
Sbjct: 4 PRFSPDELAAATGGRWMGAPPAELAGVSTDTRTIVPGA--LFVALRGERFDGHAYLGEAS 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
V+ + + V +TL +L +A + R RF +VGVTGS G
Sbjct: 62 AKGAAAAVVAHGAAAGAPLPVLAVP-----DTLAALGAIARHHRR-RFHIPVVGVTGSNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ MIA L + G V ++ GN NN VGV L+L+G+ AV+EMGM+ GEI
Sbjct: 116 KTTTREMIAGILATRG-PVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIAR 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A P + VV +HLE LG+++ VA AK E++Q + + V NADDP +
Sbjct: 175 LAAIAEPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDPRMLKRAQ 234
Query: 263 PRGVRKVFFGW---RRG 276
G R + F RRG
Sbjct: 235 AAGKRMLTFAAGAGRRG 251
>gi|402815851|ref|ZP_10865443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Paenibacillus alvei DSM 29]
gi|402506891|gb|EJW17414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Paenibacillus alvei DSM 29]
Length = 468
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 16/239 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I T++R + + F + G+ FD H + L G + ++ +G+ +
Sbjct: 30 ISTNSRKI--ESSVLFVPLQGERFDGHLYADQALK-DGAAAAMWESNHDDAPQGYPLIMV 86
Query: 109 NGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ NTL +L +A Y + +V +TGS GK+TTK MIA L V ++ GN
Sbjct: 87 D---NTLEALQRLAQAYLAQQQVK--VVAITGSNGKTTTKDMIASVLAER-YRVHKTDGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + + +IAVLEMGMSG+GEI L+ +A+P+ V+ N+G++HL LGS
Sbjct: 141 FNNHIGLPLTILSMPKDTEIAVLEMGMSGRGEIELLSSIAQPDAAVITNIGEAHLLQLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLV------ANLTVPRGVRKVFFGWRRGCDVR 280
E++ARAK EI + V + + D+PLV P+ + + FG CDVR
Sbjct: 201 REEIARAKLEIISGLRENGVLICHGDEPLVDMALSEEATKRPKNMSVIRFGAGMQCDVR 259
>gi|423398828|ref|ZP_17376029.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-1]
gi|401646012|gb|EJS63646.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-1]
Length = 458
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 18/239 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITMQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAIE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ +IAVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILDLEENTEIAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Alkalilimnicola ehrlichii MLHE-1]
gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Alkalilimnicola ehrlichii MLHE-1]
Length = 451
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 136/274 (49%), Gaps = 20/274 (7%)
Query: 27 WTINEIAE----SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+T+ E+AE + +G + G G+ D+R LAP F A+ G+ D H+FI+
Sbjct: 4 FTLQEVAEWTGGTRHGDAVTVGEVGL---DSRGLAPGG--LFVAMAGERVDGHDFIADAA 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
++ + +W V+V +T +L + R + V VGVTGS G
Sbjct: 59 RRGAAAALV--ERDGDWPLPVVRV-----ADTRAALQALGAAWRRRLAARV-VGVTGSNG 110
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+T K MIA L G + GN NN +GV L+L+ +DR AV+EMG + GEI
Sbjct: 111 KTTVKEMIAAILARRGAT-LATRGNLNNELGVPLTLLRLDREHRYAVIEMGANAPGEIAR 169
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L +A PE+ V+ N G +HLE G L VARAKGE+F V V+NADDP
Sbjct: 170 LTAIAAPEVAVITNAGPAHLEGFGDLAGVARAKGELFLGLPDAGVAVVNADDPQAPTWYA 229
Query: 263 PRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
G R+ FG DVR A+ A G +Q+
Sbjct: 230 LVGDRRCLRFGRGADADVR-ATAETAGGHFELQI 262
>gi|423409730|ref|ZP_17386879.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-3]
gi|401652845|gb|EJS70397.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-3]
Length = 458
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 18/239 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITMQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAIE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ +IAVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILDLEENTEIAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
>gi|374595649|ref|ZP_09668653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gillisia limnaea DSM 15749]
gi|373870288|gb|EHQ02286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gillisia limnaea DSM 15749]
Length = 427
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
I TDTRIL Q FFA+ G++FD ++F+ L G G V + + N DK + +
Sbjct: 16 IATDTRILKSA--QLFFALKGENFDGNKFVDQALEKGAGYVVLDDPEFLKN-DKCILVSD 72
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
L +L +A Y R ++ G+ ++ +TGS GK+T+K +I L L S N + G
Sbjct: 73 ------VLETLQQLASYHR--KYLGIPILAITGSNGKTTSKELINLVL-SRKFNTVATAG 123
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV LSL+ ++ + ++EMG + EI L +A+P+ + N G +HLE G
Sbjct: 124 NLNNHIGVPLSLLSMNSTTEFGIIEMGANHAKEIERLCGIAQPDYGYITNFGKAHLEGFG 183
Query: 227 SLEDVARAKGEIFQESKL-GDVCVLNADDPLVAN 259
S+E V +AK E+++ K G + LNADDP+ N
Sbjct: 184 SIEGVVKAKSELYEYVKAQGKLLFLNADDPIQQN 217
>gi|423456147|ref|ZP_17433000.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X1-1]
gi|401131813|gb|EJQ39462.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X1-1]
Length = 458
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + ++G L GI DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMIDGTGLVEKYEGITIQGASIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTL-NSLVNMACYARNSR--FSGVLVGVTGS 140
V V W KG N V + ++L + A+N R +VGVTGS
Sbjct: 60 -----AVENGAVATLWMKGVANPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLVAETVTFGDARAND 253
>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 474
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 139/239 (58%), Gaps = 12/239 (5%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ ++I +V+GK++ K+ I TD+R L K F A+ G+ F+ +E++
Sbjct: 15 MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKL--QKGDIFIALKGEKFNGNEYVES-AS 71
Query: 84 GKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG I ++V +K F + N NT +L+ +A + R S+ ++GVTGSV
Sbjct: 72 KKGASICIVDEVKFESEKISEFTTIIKVQNGNT--ALLELAEFYR-SKLDVKIIGVTGSV 128
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK +IA L + VF++ GN+NN++G+ L +D + ++AVLEMGM+ +GEI
Sbjct: 129 GKTTTKDIIAAVL-GVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIH 187
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+ + ARP+I V+ NV +H+ +LGS +++ AK EI + ++N+D+ L++ L
Sbjct: 188 NMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTL 246
>gi|401679774|ref|ZP_10811698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. ACP1]
gi|400218901|gb|EJO49772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. ACP1]
Length = 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 135/261 (51%), Gaps = 24/261 (9%)
Query: 27 WTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ EI ++ +G L++ I TDTR + F A+ G FD H+FI+
Sbjct: 4 FTLQEIIDATSGTCKGDVSLQFKD---ISTDTRTIEAG--YVFVALRGDTFDGHDFINTA 58
Query: 82 LYGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ KG I G V G + VE NTL + ++A + R R+ +V +T
Sbjct: 59 IE-KGATAAIVEKGRSV-----DGIICVEVE---NTLKAYQDLANFHRR-RYQIPVVAIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L S NV ++ N+NN +G+ +L+ + + V+EMGM G G
Sbjct: 109 GSSGKTTTKEMVAAVL-STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P I ++ NVG SH+E LGS E +A AKGE+ + V +LN DD V
Sbjct: 168 QIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDYFVK 227
Query: 259 NLTVPRGVRKVFFGWRRGCDV 279
++ + V +G V
Sbjct: 228 AMSSIAKGKTVTYGIHSNATV 248
>gi|373450594|ref|ZP_09542572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Wolbachia pipientis wAlbB]
gi|371932196|emb|CCE77583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Wolbachia pipientis wAlbB]
Length = 458
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 13/251 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG-VIGNQVCNNWDKGFVQVE 107
I TDTR + K F A+ G+ FD H+F+ E + KG V V+ N+ VQ
Sbjct: 29 ISTDTR--SIKKGDLFIALKGKKFDGHDFLH-EAFLKGAVAAVVSEDKYRNFPLIIVQ-- 83
Query: 108 GNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL +L NMA Y RN + ++ +TGSVGK+TTK M+ L GV+ G
Sbjct: 84 -----DTLKALHNMASYYIRNILVNAKVITITGSVGKTTTKDMLNTVLLHYGVSHVNE-G 137
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +G+ +++ +LE+GMS GEI EL+ ++ P+I V+ N+ +H+E+
Sbjct: 138 NLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSEISNPDIAVITNIEPAHVENFS 197
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
SL D+A+AK EI K VLN D+ L V FG V L+
Sbjct: 198 SLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSNANRNVVSFGKNESATVCLLDLIR 257
Query: 287 ANGGLGVQVVL 297
+ GL +++ L
Sbjct: 258 DDNGLNLKIKL 268
>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
aciditrophicus SB]
gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
aciditrophicus SB]
Length = 475
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 138/246 (56%), Gaps = 12/246 (4%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+++P ++++E+ E+V G +L+ II TDTR L + + G +FD H+F+
Sbjct: 4 NSTPQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAG--NLYIPLKGANFDGHDFL 61
Query: 79 SPELYGKGCVGVIGN-QVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVL 134
+ KG GV+ + + G + +G + +TL +L ++A + R + V
Sbjct: 62 DVAVK-KGAGGVLVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPV- 119
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGS GK+TTK M A LE +V ++ GN NN +G+ L+L+ + R D+A++E+G
Sbjct: 120 IAITGSSGKTTTKEMTAAILEQT-FSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGT 178
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ +GEI L +A P+I +V N+G +HLE L +LE + KG+++ + V NADD
Sbjct: 179 NARGEIKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADD 238
Query: 255 PLVANL 260
+A L
Sbjct: 239 EAMAPL 244
>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
aggregata IAM 12614]
gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
aggregata IAM 12614]
Length = 476
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 132/272 (48%), Gaps = 21/272 (7%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+ P+WT++ E+ G++ G G I D+R L P F AITG D H+++
Sbjct: 2 SDPLWTLDAFVEAAGGRL--QGDAGAEITGISIDSRTLEPG--DAFVAITGDRLDGHDYV 57
Query: 79 SPELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ V ++G + D +V V+ + L +L + AR+ R + +V
Sbjct: 58 VSAMEAGASVALVGEDRLPDLPADGRYVVVD-----DPLEALRKIGVAARD-RSNARIVA 111
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L L G V S ++NN GV L+L + D V E+GM+
Sbjct: 112 VTGSVGKTGTKEALRLTLAESG-KVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNH 170
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD-- 254
GEI L +M RP + ++ V HL+ S+E +A+AK EIF + G + +LN D+
Sbjct: 171 AGEISPLVKMVRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQ 230
Query: 255 -PLVANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
L+ L GV K+ FG D L A
Sbjct: 231 FDLLKFLAAAAGVSKIHTFGEDLSADSHLQKA 262
>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor bescii DSM 6725]
gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor bescii DSM 6725]
Length = 448
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 146/273 (53%), Gaps = 13/273 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA++VNG+ LK ++ + I + + K+ F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKAVNGE-LKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + ++ +V+V +TL +L ++A +AR +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFDDLKVPYVKVG-----DTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++ +P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV 295
RKV G + R Q G +V
Sbjct: 233 EFKRKVVTIGIENESNFRAQNVQKHQNGFSFEV 265
>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella ceti str. Cudo]
gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti B1/94]
gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella sp. F5/99]
gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti M490/95/1]
gi|340791043|ref|YP_004756508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella pinnipedialis B2/94]
gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella ceti str. Cudo]
gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti B1/94]
gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella sp. F5/99]
gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti M490/95/1]
gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
gi|340559502|gb|AEK54740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella pinnipedialis B2/94]
Length = 481
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Phenylobacterium zucineum HLK1]
gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Phenylobacterium zucineum HLK1]
Length = 465
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 132/281 (46%), Gaps = 22/281 (7%)
Query: 25 PIWTINEIAESVNGKILKWG-PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
P+WT EIA + GK+ G + DTR + P F A+ G D HEF+ + +
Sbjct: 4 PLWTAEEIAAATGGKLAGQAFRAGGVSIDTRTIQPG--DLFVALAGVR-DGHEFVE-QAF 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG GVI ++ QV G + +TL++L + AR VTGSV
Sbjct: 60 EKGAAGVIASR----------QVFGPAVMVPDTLHALEKLGAAARERAPQARRGAVTGSV 109
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++ I L +L S ++NN +GV L+L + R AV E+GM+ EI
Sbjct: 110 GKTSVTQAIMAGL-TLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIR 168
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLE-DVARAKGEIFQESKLGDVCVLNADD---PLV 257
L+RM RP V+ VG H E+ E VARAK EIF+ + G V VLNAD+ L+
Sbjct: 169 PLSRMVRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLL 228
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
G FG CD RL+ QV G VQ L
Sbjct: 229 KGEAERAGATVRTFGTGEACDARLIDFQVPAGHAVVQARLH 269
>gi|416390124|ref|ZP_11685458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase
[Crocosphaera watsonii WH 0003]
gi|357264085|gb|EHJ13014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase
[Crocosphaera watsonii WH 0003]
Length = 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVE 107
I D+R + +N F A+ G FD H F+ E+ KG + +I N +V K Q+
Sbjct: 29 ISADSRTI--QENDIFIALQGDKFDGHRFVD-EVIDKGAIALIVNHEVSVKSTKEIPQIV 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + +A + RN ++G+TGSVGK+TTK +IA L G NV ++ N
Sbjct: 86 VK---DTLIAYQEIANWWRN-HVKIPIIGITGSVGKTTTKEIIAAVLGVYG-NVHKTQAN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+G+ + AV+EM M GKGEI L+++A P I ++ NVG +H+ LGS
Sbjct: 141 YNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQIACPTIGIITNVGTAHIGRLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADD 254
+ +A AK E+ E V +LN DD
Sbjct: 201 RQAIAEAKCELLAEMPENSVAILNHDD 227
>gi|406895058|gb|EKD39720.1| hypothetical protein ACD_75C00310G0001, partial [uncultured
bacterium]
Length = 813
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 129/262 (49%), Gaps = 16/262 (6%)
Query: 27 WTINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
WT AE+V+G +L G + TD+R LA K F A+ G+ DAHEF +
Sbjct: 488 WTDTLAAEAVHGTLLPGSGSGRLLGSVITDSR-LASEKG-LFVALRGEKHDAHEFAGQAV 545
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
++ + D G + + L L + V++G+TGS G
Sbjct: 546 ANGATCLMVERMPSSTADTGVSHILVPDSQKALGDLAAFRRRRLARMTTQVVIGITGSCG 605
Query: 143 KSTTKSMIALAL---------ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
K+T K MIA L +G V ++ GN+NN +G+ +SL+ +D + AV+EMG
Sbjct: 606 KTTVKEMIAAILARKWPEGPDNPIGC-VLKTRGNFNNIIGLPISLLPLDLSHRAAVMEMG 664
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
M+ GE+ LA +A P+I ++ N+ +HL LG++E VARAK E+F +K V+N D
Sbjct: 665 MNMPGELTRLAEIADPDISIITNIHGAHLLGLGTIEGVARAKEELFAGTKQSGTLVINLD 724
Query: 254 DPLVANLTVPRGVRKVFFGWRR 275
D V RKV F R+
Sbjct: 725 DLWVRQFAGKYPQRKVTFAVRK 746
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 25/200 (12%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVN 120
F A++G D H+++ + G GC V+ G N K V V + N + V
Sbjct: 2 FVALSGTGTDGHKYLENAV-GNGCTAVVCETGKVSENQLQKLNVVVIETPDTNKAYAAVA 60
Query: 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA---LS 177
Y R + LVGVTG+ GK+T ++ L G V G NNR +A
Sbjct: 61 ANFYERPAE-KLTLVGVTGTNGKTTVTYLLEQVLLQAGHGV-GVIGTVNNRYTLADGTKK 118
Query: 178 LIG--------------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVV--LNVGDSH 221
+IG + +D V + M L R+ VV N+ H
Sbjct: 119 IIGTRFTTPEAMLLQQLLREMIDCGVEYVVMEVSSHALAQRRVGELSFAVVAFTNLTRDH 178
Query: 222 LESLGSLEDVARAKGEIFQE 241
L+ ++D RAK ++F E
Sbjct: 179 LDYHLDMDDYFRAKTKLFTE 198
>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
japonicum UT26S]
gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
japonicum UT26S]
Length = 458
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 129/273 (47%), Gaps = 24/273 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT EIA++ G + P + + D+R + F A+ G+ D H F+ + +
Sbjct: 4 LWTSEEIAQATGG--VASAPFAVSGVAFDSREV--TGGDLFVAMKGEATDGHRFVD-KAF 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSV 141
G+G G I +Q +V +S + R SR G +VGVTGSV
Sbjct: 59 GQGAAGAIVSQTIAQP-----------HVLVPDSAAALEALGRTSRARMQGKVVGVTGSV 107
Query: 142 GKSTTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ TK + AL+ + V +S ++NN VGV LSL + R V EMGM+ GE+
Sbjct: 108 GKTGTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGEL 167
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R RP + +V + +H+E G+ E +A AK EIF+ + G V+ D P VA L
Sbjct: 168 AALTRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATL 227
Query: 261 TV---PRGVRKVFFGWRRGCDVRLVAAQVANGG 290
R + FG+ DVR A GG
Sbjct: 228 YAKAEKHAARILTFGFDPQADVRARETVPAAGG 260
>gi|423514500|ref|ZP_17491007.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-1]
gi|402442075|gb|EJV74017.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-1]
Length = 458
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQRGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
P V FG R D
Sbjct: 233 RFPEMNLAAETVTFGDARAND 253
>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 457
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 8/219 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G D H+FI P++ G + + + + ++ V+ + +L
Sbjct: 40 KDFLFVAIKGARVDGHDFI-PQVMENGALCALSEKDLGDVPYSYILVK-----SCEQALK 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A Y R + +VG+TGSVGK++TK MIA LE +V ++ GN+NN +G+ L++
Sbjct: 94 DLAEYYRLA-LDIKVVGITGSVGKTSTKEMIASVLEQ-KYSVLKTEGNFNNEIGLPLTIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
I ++AVLEMG++ E+ LA++ARP+I V+ N+G HLE+L + V RAK E+F
Sbjct: 152 NIREEHEVAVLEMGINEFEEMHRLAKVARPDICVITNIGFCHLENLIDRDGVLRAKTEMF 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+ G +LN DD + + +G+ VFFG D
Sbjct: 212 DFMRDGAQIILNGDDDKLITVQNVKGIIPVFFGLTERHD 250
>gi|392410068|ref|YP_006446675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfomonile tiedjei DSM 6799]
gi|390623204|gb|AFM24411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfomonile tiedjei DSM 6799]
Length = 871
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 123/242 (50%), Gaps = 14/242 (5%)
Query: 44 GPPGIICTDTRILAPNKNQWFF-AITGQHFDAHEFISPELYGKGCVGVIGNQVC---NNW 99
GP I DTR P + F AI G+HF+ ++F+ L V C +W
Sbjct: 61 GPISGISIDTR--KPMSEDFIFWAIRGEHFNGNDFVEDALSAGARAVVASRDDCFQNGSW 118
Query: 100 -DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158
D +QV+ +TL +L ++A RN RF ++G+TGS GK+ K M+A L L
Sbjct: 119 PDATLIQVQ-----DTLQALQDLAATYRN-RFRYPVIGITGSNGKTLVKEMLASIL-CLE 171
Query: 159 VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVG 218
++S ++N ++G AL L+G+ +A++E G+S GE+ L RM RP+ ++ +
Sbjct: 172 RKTYRSPLSYNTQIGAALGLLGMRPEHQVAIIEAGISLPGEMDRLERMIRPDHGILTIIS 231
Query: 219 DSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+H+ LG+LE+ K +F+ K VLNADDPL L R V FG D
Sbjct: 232 KAHIGGLGTLENTIAEKRRLFKNLKEDSFLVLNADDPLSMELAQDSKARVVTFGMSPQAD 291
Query: 279 VR 280
VR
Sbjct: 292 VR 293
>gi|429754188|ref|ZP_19286928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429170195|gb|EKY11901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 443
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +A K +FA+ G F+ + F + L VI DK + +
Sbjct: 14 VSTDTRNIA--KGSIYFALKGASFNGNTFAAEALEKGAQYAVIDEAAYQTSDKMILVSD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L +L +A Y RNS +++G+TGS GK+TTK +I L S +NV + GN
Sbjct: 71 -----VLTTLQELATYHRNS-LKTLVIGITGSNGKTTTKELIKSVL-SQQLNVVATQGNL 123
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A+P+ + ++G +HLE GS
Sbjct: 124 NNNIGVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSF 183
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGWRRGCDV 279
E V + KGE++ K ++ NAD+P+ L + FG +G +V
Sbjct: 184 EGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYH-NEYSFGVGKGVNV 234
>gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 464
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR + PN +FA+ G FD + F + L + VI N ++ + +
Sbjct: 29 VCTDTRKIVPNS--IYFALKGASFDGNTFAAEALNKGATLAVIDNPAYQIDERTLLVPD- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L +L +A Y R + +++G+TGS GK+TTK +I L S + V + GN
Sbjct: 86 -----VLLALQELANYHRRT-LKTLIIGITGSNGKTTTKELIKSVL-SEAMQVVATEGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + EI +L+R+A P+ + ++G +HLE GS
Sbjct: 139 NNAIGVPLTLLSIKPETDIAIVEMGANHPHEIADLSRIAEPDYGYITSIGKAHLEGFGSF 198
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANL 260
E V + K E++ K ++ NADD L +L
Sbjct: 199 EGVIKTKAELYDYLKAHQKTIIYNADDTLQQSL 231
>gi|374307645|ref|YP_005054076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Filifactor alocis ATCC 35896]
gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Filifactor alocis ATCC 35896]
Length = 452
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 15/232 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + + F AI G+HFD + F+ L G V V+ + ++ + V
Sbjct: 30 ITTDSRKV--KQGDLFIAIKGEHFDGNHFVDMAL-DNGAVAVLSS--ISHKSPRVITVP- 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T+ +L +A R+ ++ +TGS GK+TTK MI AL S N +++ GN+
Sbjct: 84 ----DTVKALGKLASGYRD-MLDIPVISITGSSGKTTTKDMIFYALNS-QCNAYRTEGNF 137
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D D+ +LEMGMS GEI L +A+P I V+ N+G +HLE LGS
Sbjct: 138 NNEIGMPLTILNSDEEHDVMILEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQ 197
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCD 278
E + AK EI D+ ++N +D + NL V + + K FG+ CD
Sbjct: 198 EKIFEAKMEITSFMHEKDILLVNGEDKFLRNLDKDVYQPMIKT-FGFSNSCD 248
>gi|403252959|ref|ZP_10919264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
sp. EMP]
gi|402811721|gb|EJX26205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
sp. EMP]
Length = 426
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 118/216 (54%), Gaps = 10/216 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F A+ G+ FD H+FI L G +I + N D+ F+ VE + V+TL L
Sbjct: 22 FVAVKGKRFDGHDFIDEALRN-GAYAIIAERKTVNSDRIFL-VESS--VDTLAKLAR--- 74
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ FSG +VGVTGS GK+TTK ++ L++ +VF++ GN N G+ LS++ +
Sbjct: 75 -EKLGNFSGTVVGVTGSSGKTTTKEILYNLLKN-KRSVFKTPGNMNTEYGLPLSILNDYK 132
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I VLEM S G+I L ++A P++ V+LNVG +HLE G+ E + K EI + SK
Sbjct: 133 GEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKMEIIKHSK 192
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
+ V DDP + VPR +FFG G V
Sbjct: 193 ENAIAVTLFDDPDLRK-EVPRYRNTLFFGKEGGDSV 227
>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[cyanobacterium UCYN-A]
gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[cyanobacterium UCYN-A]
Length = 458
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 14/233 (6%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQ 105
+I TDTR + K F A++G++FD H FI E KG VI Q + N+ K
Sbjct: 31 VINTDTREI--QKGDVFIALSGKNFDGHLFIR-EAIEKGASIVILEQEALVNSTYKVSHI 87
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V G+ L + +A + RN ++ ++ +TGSVGK+TTK +IA +L G V ++Y
Sbjct: 88 VVGSA----LKAYQQIANWWRN-KYKIPIIAITGSVGKTTTKELIAASLGMYG-QVHKTY 141
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +GV +L+ + + D AV+EMGM EI L ++ +P I ++ N+G +H+ L
Sbjct: 142 DNYNNEIGVPRTLLKLSKHHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRL 201
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN--LTVPRGVRKVFFGWRRG 276
GS E +A+AK E+ E L + +LN DD L+ + + +G + + +G +G
Sbjct: 202 GSKEAIAQAKCELLSEMSLDSIAILNNDDELLMKTAMRIWKG-KTITYGLNKG 253
>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Anaerostipes sp. 3_2_56FAA]
gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Anaerostipes sp. 3_2_56FAA]
Length = 451
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 139/287 (48%), Gaps = 29/287 (10%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
TI +I + G +L P + TD+R + P+ F I G+ +AH+F+ L
Sbjct: 4 MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHT--LFVPIVGERVNAHKFVESALK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G + + Q EG + +TL ++ +A + RN + S ++G+TG
Sbjct: 62 DGGA----------SLTQEHEQAEGPHPIIKVPDTLKAMQQIASFYRN-KMSLPIIGITG 110
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TT+ MIA L+ VF++ GN N++VGV L+L + I VLEMGMS G+
Sbjct: 111 SVGKTTTREMIAHVLKG-KYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQ 169
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + RP VV NVG SH+E +GS +++ R K +I V LN D+ ++
Sbjct: 170 ITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMIRK 229
Query: 260 ----LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+T P FFG+ C R + +G V E +E
Sbjct: 230 HIGYVTHPYE----FFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKE 272
>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
maritima MSB8]
gi|418046172|ref|ZP_12684266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
maritima MSB8]
gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
maritima MSB8]
gi|351675725|gb|EHA58885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
maritima MSB8]
Length = 426
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 10/216 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F A+ G+ FD H+FI L G +I + N D+ F+ VE + V+TL L
Sbjct: 22 FVAVKGKRFDGHDFIDEALRN-GAYAIIAERKTVNSDRIFL-VESS--VDTLAKLAREKL 77
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
FSG +VGVTGS GK+TTK ++ L++ +VF++ GN N G+ LS++ +
Sbjct: 78 ----GNFSGTVVGVTGSSGKTTTKEILYNLLKN-KRSVFKTPGNMNTEYGLPLSILNDYK 132
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I VLEM S G+I L ++A P++ V+LNVG +HLE G+ E + K EI + SK
Sbjct: 133 GEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKMEIIKHSK 192
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
+ V DDP + VPR +FFG G V
Sbjct: 193 ENAIAVTLFDDPDLRK-EVPRYRNTLFFGKEGGDSV 227
>gi|425462995|ref|ZP_18842458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9808]
gi|389823819|emb|CCI27731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9808]
Length = 454
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 21/240 (8%)
Query: 28 TINEIAE--SVNGKI-LKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++N++A+ S+ K + + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSI--ELGQAFLALKGDNFNGHDFIDMA 63
Query: 82 LYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ V ++ V N+ VQ NTL + + + RN +F+ ++ +
Sbjct: 64 IARGAAVLIVDQPVSVNYSSNIPVFLVQ-------NTLETYQQLGHWWRN-QFTIPVIAI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM G+
Sbjct: 116 TGSVGKTTTKELIASLLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGR 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA++A+P I V+ NVG +H+ LGS +A AK E+ ES + VLN D PL+
Sbjct: 175 GEIALLAQIAQPTIAVITNVGTAHIGRLGSEAAIAEAKCELLSESPSSSIAVLNYDHPLL 234
>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 461
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IAEIVRATEGKLIKGSLKDKVIGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAM-TK 62
Query: 86 GCVGVIGNQVCNNW---DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V+ ++ N D F + N +TL +L +A Y R +F+ V VTGS G
Sbjct: 63 GAKAVLTARLDNIEYLRDFPFNVIYVN---DTLEALHKIASYYR-KKFNIPFVAVTGSTG 118
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 119 KTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRR 177
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + +P++ V N+G +H+E LGS E++ +AK E+ ++ K +V VLNADD +++ + +
Sbjct: 178 LKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPL 237
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ +G + G + A + G G++ L+
Sbjct: 238 QYSSKYYRYGIKNG---EIKACNIEKGEKGIKYTLK 270
>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH621]
gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH621]
Length = 458
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R +VGVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVVGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLAAETVTFGDARAND 253
>gi|334316875|ref|YP_004549494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti AK83]
gi|384535590|ref|YP_005719675.1| probabable udp-n-acetylmuramoylalanyl-d-glutamyl- 2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Sinorhizobium meliloti SM11]
gi|407721212|ref|YP_006840874.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti Rm41]
gi|334095869|gb|AEG53880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti AK83]
gi|336032482|gb|AEH78414.1| probabable udp-n-acetylmuramoylalanyl-d-glutamyl- 2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Sinorhizobium meliloti SM11]
gi|407319444|emb|CCM68048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti Rm41]
Length = 477
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 14/273 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLAAMNGRPVGNLPEGITGISIDSRTI--GDGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V+ + + +V L +++ + C AR+ R + ++ VTGSVGK
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVDDV--LEAMIRLGCAARD-RSAAKIIAVTGSVGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEIL L
Sbjct: 119 TTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
RM RP + VV ++ +HL + SL+++A AK EIF+ G V+N D L+
Sbjct: 178 TRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERA 237
Query: 261 TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLG 292
GV V FG + RL A+ A G G
Sbjct: 238 AAAAGVSHVHSFGANPRSEFRL--AEFAGGAEG 268
>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium QM B1551]
gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium QM B1551]
Length = 460
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 18/279 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++A + G + G + DTR + + + I G+ F+ H F+ +
Sbjct: 5 TLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTI--QQGNLYIPIKGERFNGHTFVHKAIE 62
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V + N+ N D + V+ +TL +L +A R+ +VG+TGS
Sbjct: 63 N-GAVATLWNKDEENPPTDISVILVD-----DTLVALQQLAKSYRH-ELDIKVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+ L++ V ++ GN+NN +G+ L+++ +D DIAVLEMGMS +GEI
Sbjct: 116 GKTTAKDMVKAVLDTT-YRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P++ ++ N+G+SHL+ LGS + +A AK EI V N D+PL+ +
Sbjct: 175 FLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEPLLTSRV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
V + FG D L + ++ LG + +E
Sbjct: 235 VNPVFETMTFGSSEQND--LYPSAISAEELGTTFTVSRE 271
>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Sinorhizobium meliloti 1021]
gi|384530064|ref|YP_005714152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti BL225C]
gi|433613963|ref|YP_007190761.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sinorhizobium meliloti GR4]
gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti 1021]
gi|333812240|gb|AEG04909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti BL225C]
gi|429552153|gb|AGA07162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sinorhizobium meliloti GR4]
Length = 477
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 14/273 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLAAMNGRPVGNLPEGITGISIDSRTI--GDGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V+ + + +V L +++ + C AR+ R + ++ VTGSVGK
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVDDV--LEAMIRLGCVARD-RSAAKIIAVTGSVGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEIL L
Sbjct: 119 TTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
RM RP + VV ++ +HL + SL+++A AK EIF+ G V+N D L+
Sbjct: 178 TRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERA 237
Query: 261 TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLG 292
GV V FG + RL A+ A G G
Sbjct: 238 AAAAGVSHVHSFGANPRSEFRL--AEFAGGAEG 268
>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST196]
gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST196]
Length = 458
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R +VGVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVVGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLAAETVTFGDARAND 253
>gi|384566931|ref|ZP_10014035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharomonospora glauca K62]
gi|384522785|gb|EIE99980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharomonospora glauca K62]
Length = 487
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 137/274 (50%), Gaps = 25/274 (9%)
Query: 28 TINEIAESVNGKILKWGPP----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIAE+V G++ + G + D+R L K F A+ G+ D H+F + +
Sbjct: 5 TLAEIAEAVGGRLHRADGTERVTGTVEFDSRKL--TKGGLFVALPGERVDGHDFAAAAV- 61
Query: 84 GKGCVGVIGNQVCN------------NWDKGFVQVEGNGNVNTLNSLVNMACYARN--SR 129
G VGV+ + + + V + G+ + + L +A AR+ +R
Sbjct: 62 DSGAVGVLAAREVDAPAVVVPPLPPGKAHERSVALTGDTDGSGAAVLAALAALARHVVTR 121
Query: 130 FSGV---LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
+ +VGVTGS GK++TK +IA LE LG V G++NN +G + + D
Sbjct: 122 LAETGLTVVGVTGSSGKTSTKDLIAQLLEPLGPTVAPP-GSFNNELGHPWTALRADEETK 180
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
VLE+ G G I ELA +A P I VVLNVG +H+ GS E +AR KGE+ + G
Sbjct: 181 HLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHVGEFGSQEGIARTKGELVEALPPGG 240
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADDPLVA + R V G DVR
Sbjct: 241 VAVLNADDPLVAAMASRTRARVVRVGESPDADVR 274
>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus curdlanolyticus YK9]
gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus curdlanolyticus YK9]
Length = 465
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 26/241 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--------ELYGKGCVGVIGNQVCNNWD 100
I D+R + P Q + + G++FD HEF + L+ +GC + +++ +
Sbjct: 20 ITKDSRAVEPG--QLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCP--VPDELA---E 72
Query: 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
V V +TL++L +A R + +VG+TGS GK+TTK + A L ++
Sbjct: 73 APLVLVP-----DTLSALQRLASAYRE-ELNVRIVGITGSNGKTTTKDLTAAVLGTI-YR 125
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
V ++ GN NN +GV L+++ +D ++ AVLEMGMS GEI L+ +A P+ ++ NVGD+
Sbjct: 126 VHKTAGNLNNHIGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITNVGDA 185
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRG 276
H+ LGS +A AK EI G V N D+PL +A + +P G V FG
Sbjct: 186 HMLQLGSRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFGAAAD 245
Query: 277 C 277
C
Sbjct: 246 C 246
>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylotenera versatilis 301]
gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylotenera versatilis 301]
Length = 464
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 124/238 (52%), Gaps = 20/238 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + K Q F A+ G +FD H F + + +I ++ N V
Sbjct: 25 VGTDSR--SVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLISDRTLNVQPAILVD--- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---VFQSY 165
+T SL +A Y R S+F L VTGS GK+T K M+A L + V +
Sbjct: 80 ----DTCQSLGELAAYWR-SKFDIPLAAVTGSNGKTTVKEMLASILRAACDQPDAVLATV 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+L+ ++ AV EMGM+ GEI L+R+ +P + ++ N G++H+ L
Sbjct: 135 GNLNNHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGKPTVALINNAGNAHIGEL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLTVPRGVRKVF-FGWRRGCDV 279
GS E +ARAKGEIF+ V+NADD PL +L G RK+ FG + DV
Sbjct: 195 GSFEAIARAKGEIFEGLAADATAVINADDVFAPLWLDLA---GQRKIMTFGLKNKADV 249
>gi|423596875|ref|ZP_17572900.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD048]
gi|401218540|gb|EJR25217.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD048]
Length = 458
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLAAETVTFGDARAND 253
>gi|423473253|ref|ZP_17449995.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-2]
gi|402426405|gb|EJV58530.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-2]
Length = 458
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 132/261 (50%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + ++G L GI DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMIDGTGLAEKYEGITIQGASIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTL-NSLVNMACYARNSR--FSGVLVGVTGS 140
V V W KG N V + ++L + A+N R +VGVTGS
Sbjct: 60 -----AVENGAVATLWMKGVANPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+ +ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSTLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLVAETVTFGDARAND 253
>gi|392953124|ref|ZP_10318678.1| hypothetical protein WQQ_27500 [Hydrocarboniphaga effusa AP103]
gi|391858639|gb|EIT69168.1| hypothetical protein WQQ_27500 [Hydrocarboniphaga effusa AP103]
Length = 466
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ +DTR L P F A+ G+ FD H+++ E +G VG + V D QV
Sbjct: 26 VISDTRQLQPGD--LFVALVGERFDGHDYLD-EARQRGAVGAL---VSRAIDVALPQVL- 78
Query: 109 NGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
++L + YAR+ R ++ +V VTGS GK+TTK ++A L + G V + G
Sbjct: 79 -----VGDTLAGLQDYARSWRGDYAHPVVAVTGSNGKTTTKQLLAAVLAARG-PVLATEG 132
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L + AV+EMG + EI LA +A+P+I +V GD+HLE G
Sbjct: 133 NLNNHIGVPLTLARLRDDYATAVIEMGANHLHEIEALAAIAQPQIGIVTQAGDAHLEGFG 192
Query: 227 SLEDVARAKGEIFQ--ESKLGDVCVLNADD---PLVANLTVPRGVRKVFFGWRRGCDV 279
S + VAR KGE+F + + ++NADD PL + L G +++ FG DV
Sbjct: 193 SRDGVARGKGELFAAIARQPQGIAIINADDVYAPLWSALA--GGAQQIRFGLSAAADV 248
>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pomorum DM001]
gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pomorum DM001]
Length = 461
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 118/232 (50%), Gaps = 12/232 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT E+ + G L P + I DTR LAP F A+ G + D H I+
Sbjct: 2 SLLWTREELETATGGTFLGNAPVSVTGISIDTRSLAPG--DLFIALKGDNSDGHAHIATA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L KG V+ + D + V +T+ L +A AR +RF G +V VTGSV
Sbjct: 60 LE-KGAAAVLAHSAEGLTDPRILLVS-----DTMLGLQKLALAAR-ARFKGKVVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L L G+ + ++NN GV L+L + R + E+GM+ GEIL
Sbjct: 113 GKTTTKEMLRLCLAPSGLT-HAAEASYNNHWGVPLTLARLPREAAFCISEIGMNHPGEIL 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
LA+M +P++ V+ +G +HL +GSL+ +A K I G + ++ D
Sbjct: 172 PLAKMVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITALPAGGIAIMPDD 223
>gi|388259727|ref|ZP_10136896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
sp. BR]
gi|387936453|gb|EIK43015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
sp. BR]
Length = 463
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 18/228 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R L N + F A+ G+ FDAH+FI+ + K C V+ ++ F +++
Sbjct: 37 VSIDSRTL--NAGELFVALRGERFDAHDFIADAVAKKPCALVV--------ERFFPEIKL 86
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
V ++L +L +A R S F+ ++ +TGS GK+T K+++A L G + G
Sbjct: 87 PQLVVSDSLLALGQIAALNR-SLFARPVIAITGSSGKTTVKTLLAGILAECG-PAHATKG 144
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ ++ + AV+EMG SG GEI L +A P+I +V NV +H++ G
Sbjct: 145 NFNNHIGVPLTLLQLEAHHEFAVIEMGASGPGEIEYLCSLAVPQITMVNNVMAAHIQGFG 204
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVF 270
SL+ VARAKGEI+ V V+N DD +A LT R +R F
Sbjct: 205 SLQGVARAKGEIYAALPATGVAVVNMDDRFAPDWLAALTNRRVLRVSF 252
>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH603]
gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH603]
Length = 458
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + ++GVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLAAETVTFGDARAND 253
>gi|418401179|ref|ZP_12974711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti CCNWSX0020]
gi|359504836|gb|EHK77366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti CCNWSX0020]
Length = 477
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 14/273 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLAAMNGRPVGNLPEGITGISIDSRTI--GDGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V+ + + +V L +++ + C AR+ R + ++ VTGSVGK
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVDDV--LEAMIRLGCAARD-RSAAKIIAVTGSVGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEIL L
Sbjct: 119 TTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
RM RP + VV ++ +HL + SL+++A AK EIF+ G V+N D L+
Sbjct: 178 TRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERA 237
Query: 261 TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLG 292
GV V FG + RL A+ A G G
Sbjct: 238 AAAAGVSHVHSFGANPRSEFRL--AEFAGGAEG 268
>gi|378826598|ref|YP_005189330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sinorhizobium fredii HH103]
gi|365179650|emb|CCE96505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Sinorhizobium fredii HH103]
Length = 477
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 18/266 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGII--CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GII D+R +A K + FFAI G D H++ L
Sbjct: 4 LWTCSDLLAAMNGRPVGNLPEGIIGISIDSRTIA--KGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGASLLVVSEGKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + + + E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + VV ++ +HL + SL+++A AK EIF+ G V+N D P L+
Sbjct: 175 RPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLV 282
GV + FG + RL+
Sbjct: 235 ERAAAAAGVSHIHSFGANPKSEYRLI 260
>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
weihenstephanensis KBAB4]
gi|423515082|ref|ZP_17491563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-4]
gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
weihenstephanensis KBAB4]
gi|401168045|gb|EJQ75313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-4]
Length = 458
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R +VGVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVVGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLAAETVTFGDARAND 253
>gi|425738294|ref|ZP_18856559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus massiliensis S46]
gi|425479967|gb|EKU47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus massiliensis S46]
Length = 451
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 135/252 (53%), Gaps = 16/252 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
+ D+R + K F G++ D H FI + +G G G+ DK +
Sbjct: 29 VTIDSRQI--EKGMLFIPFKGENVDGHRFIQ-QAFGDGAGASFYEKGSTYEVPKDKPVIY 85
Query: 106 VEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A Y ++ + +V VTGS GK+TTK +I L S V ++
Sbjct: 86 VE-----DTLTALQQLAKAYLKH--VNPKVVAVTGSNGKTTTKDIIENVLAST-FKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ +D+ ++++LEMGMSG EI L+ +A+P++ V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTILDLDQDTEVSILEMGMSGFNEIELLSDIAQPDVAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + V + D+PL+ L G KV G V+
Sbjct: 198 LGSREGIAKAKFEIVSGLKSDGLLVYDGDEPLLEPLVREADGFHKVSVGIESDNKVQCRI 257
Query: 284 AQVANGGLGVQV 295
AQV G+ +V
Sbjct: 258 AQVHESGITFEV 269
>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
melitensis bv. 1 str. 16M]
gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
abortus bv. 1 str. 9-941]
gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
Abortus 2308]
gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
ovis ATCC 25840]
gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus S19]
gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis ATCC 23457]
gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus str. 2308 A]
gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 2 str. 63/9]
gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
microti CCM 4915]
gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus NCTC 8038]
gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. 16M]
gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
86/8/59]
gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus bv. 9 str. C68]
gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. Rev.1]
gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 3 str. Ether]
gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
abortus bv. 5 str. B3196]
gi|376272831|ref|YP_005151409.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus A13334]
gi|384211802|ref|YP_005600884.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis M5-90]
gi|384408912|ref|YP_005597533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis M28]
gi|384445475|ref|YP_005604194.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Brucella melitensis NI]
gi|423166490|ref|ZP_17153193.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI435a]
gi|423171135|ref|ZP_17157810.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI474]
gi|423172782|ref|ZP_17159453.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI486]
gi|423178524|ref|ZP_17165168.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI488]
gi|423180565|ref|ZP_17167206.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI010]
gi|423183697|ref|ZP_17170334.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI016]
gi|423185363|ref|ZP_17171977.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI021]
gi|423188498|ref|ZP_17175108.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI259]
gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
melitensis bv. 1 str. 16M]
gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
abortus bv. 1 str. 9-941]
gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
Cpn60:Cytoplasmic peptidoglycan synthetases,
C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
2308]
gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
ovis ATCC 25840]
gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus S19]
gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis ATCC 23457]
gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus str. 2308 A]
gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
microti CCM 4915]
gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus NCTC 8038]
gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. 16M]
gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
86/8/59]
gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus bv. 9 str. C68]
gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 3 str. Ether]
gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. Rev.1]
gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 2 str. 63/9]
gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
abortus bv. 5 str. B3196]
gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis M28]
gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis M5-90]
gi|349743464|gb|AEQ09007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Brucella melitensis NI]
gi|363400437|gb|AEW17407.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus A13334]
gi|374538469|gb|EHR09977.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI474]
gi|374543974|gb|EHR15452.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI435a]
gi|374544301|gb|EHR15778.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI486]
gi|374545305|gb|EHR16768.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI488]
gi|374548096|gb|EHR19548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI010]
gi|374548525|gb|EHR19973.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI016]
gi|374559060|gb|EHR30449.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI259]
gi|374560073|gb|EHR31456.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI021]
Length = 481
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum nigrificans DSM 574]
gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum nigrificans DSM 574]
Length = 456
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 141/271 (52%), Gaps = 14/271 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+TI EIA G I++ P + CTD+R F A+ G+ D H+F +
Sbjct: 4 YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSR--RAKNGDIFVAMRGRQVDGHDFALKAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ V ++V +T+ +L +A + R SR + +V VTGS GK
Sbjct: 62 QGATALLVTKTVTVPPQVAVIKVS-----DTIQALQQLAAHNR-SRLNIPVVAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK MIA L + ++ GN+NN +G+ L+L+ +D+ AV+EMGM G GEI L
Sbjct: 116 TSTKDMIAAVLNTR-YKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A+P V+ N+G++HLE LGS++++A AK E+ +LN D P + N V
Sbjct: 175 ARLAKPTGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRN-QVS 233
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
R +V+F + LVA V G GV+
Sbjct: 234 RCQGQVWF-YSINGQTDLVARNVRVEGRGVR 263
>gi|347754356|ref|YP_004861920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Chloracidobacterium thermophilum B]
gi|347586874|gb|AEP11404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Chloracidobacterium thermophilum B]
Length = 472
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 26/223 (11%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG-CVGVIGNQVCNNWDKGFVQVEGNG 110
D+R + P FFAI G+ FDAH F+ PE+ +G C VI + ++E
Sbjct: 29 DSRTIRPG--DLFFAIHGKRFDAHAFV-PEVLARGACAAVI--------HRPLPELEPAA 77
Query: 111 N-----VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL ++ +A A R+ +VG+TGS+GK+T K + AL L G ++ S
Sbjct: 78 ARCLLVPDTLRAMQELA-RALLHRWGRPIVGITGSMGKTTAKDLTALTLAPYG-RIYASV 135
Query: 166 GNWNNRVGVALS---LIGIDRAV---DIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
GN NN G+ L+ ++ R + D+AVLEMGM+ KGEI L +A P++ VVLNV
Sbjct: 136 GNLNNEYGLPLAVFQMLSDGRRMADYDVAVLEMGMNEKGEIARLCEIAPPDVSVVLNVAP 195
Query: 220 SHLESLGS-LEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
H+E+ LE +A AK EI K +LNADDP VA +
Sbjct: 196 VHIENFPDGLEGIAAAKAEIVHGLKPTGTAILNADDPRVARMA 238
>gi|428774107|ref|YP_007165895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobacterium stanieri PCC 7202]
gi|428688386|gb|AFZ48246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobacterium stanieri PCC 7202]
Length = 449
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 138/262 (52%), Gaps = 25/262 (9%)
Query: 26 IWTINEIAESV----NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I I EI E+ N IL GI TDTR L + F A+ G++FD H+F++ E
Sbjct: 7 ISQIREITEAFCEAENNAILTQECRGI-STDTRSL--QGGELFLALRGENFDGHDFLT-E 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR-----NSRFSGVLVG 136
KG + ++ ++ N+ E N NV L + Y + + + ++G
Sbjct: 63 AISKGAIALMVDE--NHLS------EENFNVPILKVKDTLEAYQKIAHGWREQLNIPIIG 114
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+TTK +I+ L + G V ++ N+NN +GV +L+ I + + AV+EM M G
Sbjct: 115 VTGSVGKTTTKELISAVLSTQG-KVLKTKANYNNEIGVPKTLLEITKEDNFAVIEMAMRG 173
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
+GEI L + P I ++ NVG +H+ LGS E +ARAK E+ V +LNAD+ L
Sbjct: 174 EGEIALLTDIVNPTIGLITNVGTAHIGRLGSREAIARAKCELLANMNPEGVAILNADNEL 233
Query: 257 VANL--TVPRGVRKVFFGWRRG 276
+ TV +G + V +G G
Sbjct: 234 LMETAKTVWQG-KIVSYGLEHG 254
>gi|407715624|ref|YP_006836904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cycloclasticus sp. P1]
gi|407255960|gb|AFT66401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cycloclasticus sp. P1]
Length = 466
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 18/260 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G++FDA++F+ ++ ++ + D +V+V+
Sbjct: 27 ISTDTRKI--QQGDLFVALQGENFDANDFVEQANKNGAVAAIVSAEI--SVDMPYVRVD- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN-VFQSYGN 167
+TL +L +A R + LV +TGS GK++ K M+A L G N V + GN
Sbjct: 82 ----DTLLALTQIAKEQRKA-LDIPLVAITGSNGKTSVKEMLASILS--GSNKVLATEGN 134
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN++GV L+L+ + D+AV+EMG S G+I L +A P + ++ NVG +HLE GS
Sbjct: 135 LNNQIGVPLTLLRLTDEHDVAVIEMGASHSGDIAHLCDIAAPTVAILNNVGSAHLEGFGS 194
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV----RLV 282
++ VA AKGEI +LN ++P + G R+V FGW DV V
Sbjct: 195 IQGVANAKGEIVSGVSETGTAILNQEEPWLDQWLALLGNRRVIRFGWSDNADVWADIESV 254
Query: 283 AAQVANGGLGVQVVLEKERE 302
+ NG VL ++E
Sbjct: 255 QTGIFNGQFKTTFVLHYQQE 274
>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
cellulosum So ce56]
gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
cellulosum So ce56]
Length = 490
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 17/264 (6%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
P N ++++E+A + G++L+ GP + TD+R +AP F A+ G+ FD H F+
Sbjct: 5 IPHNLAPFSLDELARATGGRVLRSGPDARGVSTDSRTIAPGA--AFVALAGESFDGHRFL 62
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV----- 133
++ +V G V V + L +L +A R +G
Sbjct: 63 DAAAQRGAAAFIVSREVALPPGGGAVLVN-----DGLTALGALARAHRERWRAGAHPGGP 117
Query: 134 --LVGVTGSVGKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGIDRAVDIAVL 190
+V + GS GK+TT IA L ++G V + GN NN +G+ ++L+G++ AV+
Sbjct: 118 RAIVAIGGSAGKTTTTRTIAALLAAVGRGEVHATAGNLNNAIGLPMTLLGLEDRHRFAVV 177
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+G + +GE+ LAR+A P++ V+ ++G H E LG+LEDVA +G++ V +
Sbjct: 178 EIGTNQRGEVAALARIAGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAALPAEGVALG 237
Query: 251 NADD-PLVANLTVPRGVRKVFFGW 273
N DD +V L R++ +G+
Sbjct: 238 NGDDVKVVEQLERAGAARRITYGF 261
>gi|339319334|ref|YP_004679029.1| UDP-N-acetylmuramyl pentapeptide synthase [Candidatus Midichloria
mitochondrii IricVA]
gi|338225459|gb|AEI88343.1| UDP-N-acetylmuramyl pentapeptide synthase [Candidatus Midichloria
mitochondrii IricVA]
Length = 461
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 113 NTLNSLVNMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
NT +LV++A + R N L+GVTGS GK++TK + LAL++ G N + + GN NN
Sbjct: 85 NTEEALVDLALFRRANFPQKTKLIGVTGSAGKTSTKEQVKLALQNFG-NAYATVGNLNNH 143
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+G+ L++ + VD +LEMGM GEI L+++ARP+I ++ + +HLE S+ED+
Sbjct: 144 LGLPLTIANVPDDVDYCILEMGMKHAGEISYLSKIARPDISIITTIAPAHLEFFNSIEDI 203
Query: 232 ARAKGEIFQESKLGDVCVLNADDP 255
RAK EI+Q K G V+N D P
Sbjct: 204 VRAKSEIYQGMKPGSWAVINEDSP 227
>gi|333924513|ref|YP_004498093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750074|gb|AEF95181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 456
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 141/271 (52%), Gaps = 14/271 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+TI EIA G I++ P + CTD+R F A+ G+ D H+F +
Sbjct: 4 YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSR--RAKNGDIFVAMRGRQVDGHDFALKAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ V ++V +T+ +L +A + R SR + +V VTGS GK
Sbjct: 62 QGATALLVTKTVTVPPQVAVIKVS-----DTIQALQQLAAHNR-SRLNIPVVAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK MIA L + ++ GN+NN +G+ L+L+ +D+ AV+EMGM G GEI L
Sbjct: 116 TSTKDMIAAVLNTR-YKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A+P V+ N+G++HLE LGS++++A AK E+ +LN D P + N V
Sbjct: 175 ARLAKPTGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRN-QVS 233
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
R +V+F + LVA V G GV+
Sbjct: 234 RCQGQVWF-YSINGQTDLVARNVRVEGRGVR 263
>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
NCIMB 41171]
gi|390936445|ref|YP_006394004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum BGN4]
gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
NCIMB 41171]
gi|389890058|gb|AFL04125.1| probableUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
[Bifidobacterium bifidum BGN4]
Length = 513
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 27/278 (9%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 5 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 62
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV--- 133
F++ V ++ ++V D Q+ V+ L L AR R +G
Sbjct: 63 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAAR--RAAGTPFT 116
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
L+G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG
Sbjct: 117 LIGITGSVGKTTTKDLMAALLSTLGSTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMG 175
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
S GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNAD
Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 235
Query: 254 DPLVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG 289
D VA + P+G VF+ G D A A+G
Sbjct: 236 DAHVAAMAPLAPQG--HVFWFGMAGDDAEASAGNAASG 271
>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 460
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 136/256 (53%), Gaps = 12/256 (4%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
++ TD+R + P F A G+ FD H+F + L G V V V N+ +G +
Sbjct: 27 LVTTDSREVRPG--CIFVAFPGEKFDGHDFAAKALEN-GAVYV----VVNHPVEGVPAEK 79
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
++ ++++ M R S++ +VGVTGSVGK+TTK M AL G + ++ GN
Sbjct: 80 AILCPDSYHAMMVMGANYR-SQYHPKMVGVTGSVGKTTTKQMTYAALAGFGETI-KTEGN 137
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +G+ +L+ ++ + AV+EMGMS GEI LAR ARP++ ++ +G SH+ +LGS
Sbjct: 138 QNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGS 197
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW-RRGCDVRLVAAQV 286
E++ +AK EI G VLN DD + +P V+ V+F DV A +
Sbjct: 198 QENICKAKLEICNGLPEGAPLVLNYDDKFLRAAKLPAHVKPVWFSLADENADV--CALSI 255
Query: 287 ANGGLGVQVVLEKERE 302
G+ VLE + E
Sbjct: 256 RQEEDGMSFVLEDQEE 271
>gi|403746379|ref|ZP_10954912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120710|gb|EJY55064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 457
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 14/249 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D R + P F A GQ + H+F+ V ++ V + G
Sbjct: 29 IAVDHREVQPQDA--FVAFVGQRVNGHQFVEDAFSRGASVAIVTENV---------KAAG 77
Query: 109 NGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ ++L+ + A + R FSG +VG+TGS GK+TTK M+A L ++G +F +
Sbjct: 78 GSILRVQDALLAVQMMAEHERQQFSGPVVGITGSNGKTTTKEMVAAVLGAMGDCLF-TPA 136
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +G+ L+++ VLEMGM G G+I L +A+P I V+ N+G SH+E LG
Sbjct: 137 NRNNELGLPLTILQRQARHRSIVLEMGMRGFGQIRRLCEIAQPTIGVITNIGYSHIELLG 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S E +ARAKGE+ + +LN DDP + + ++G+ + DVR
Sbjct: 197 SQEGIARAKGELLEALPEHGRGILNRDDPWLCRIASKSRAPITWYGFAKDADVRADGVTW 256
Query: 287 ANGGLGVQV 295
A G+ +V
Sbjct: 257 AEDGMHFRV 265
>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Citreicella sp. SE45]
gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Citreicella sp. SE45]
Length = 477
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 26 IWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT E A + G++ W G+ DTR +AP F D H+F++ L
Sbjct: 3 LWTAQEAAAATGGQVAGDWDATGV-SIDTRTIAPGD---LFVALKAARDGHDFVAQALE- 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG + + V D + V V+ + + + A R +V VTGSVGK+
Sbjct: 58 KGAAAALVSHVPEGVDPARLLV-----VDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK M+ L + G V + ++NN GV L+L + VD AV+E+GM+ GEI L+
Sbjct: 113 STKEMLRCVLGAQG-KVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLS 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD---DPLVANLT 261
RMARP + +V V +HL + SLE +AR KG IF+ + G V+N D P++ +
Sbjct: 172 RMARPHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMA 231
Query: 262 VPRGVRKVFFGWRRGCDVRLV------AAQVANG 289
R + FG G R+ AA VA G
Sbjct: 232 QARAAHVIDFGEAAGNHHRVTEVTICDAATVAQG 265
>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella inopinata BO1]
gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella inopinata BO1]
Length = 481
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
Length = 481
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B str. Eklund 17B]
gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B str. Eklund 17B]
Length = 453
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 141/260 (54%), Gaps = 16/260 (6%)
Query: 27 WTINEIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+NE+ ++++G++L G I TDTR + +KN F A+ G +F+ + ++ +
Sbjct: 3 LTLNEVLKAIDGELLIKNNEGNFEKISTDTRKI--DKNSLFIALKGNNFNGNNYVVEAIK 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLN----SLVNMACYARNSRFSGVLVGVTG 139
V +I + + ++ G G V +N +L +A Y R + +VG+TG
Sbjct: 61 AGATVAII-----DEVNFKLEELNGKGTVIKVNDSKTALGALAKYYR-EKLGIKVVGITG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A A S +VF++ GN+NN +G+ L + +D + DIAVLEMG + E
Sbjct: 115 STGKTSTKDLVA-AFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA +ARP++ ++ NVG SH+E L + E++ + K I K + V+N ++ ++
Sbjct: 174 IHRLANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYENDMLQK 233
Query: 260 LTVPRGVRKVFFGWRRGCDV 279
+ + G+ + D+
Sbjct: 234 VNESNEFKIEKIGYDKKYDL 253
>gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella neotomae 5K33]
gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella neotomae 5K33]
Length = 481
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Acetohalobium
arabaticum DSM 5501]
gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Acetohalobium
arabaticum DSM 5501]
Length = 465
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 146/271 (53%), Gaps = 15/271 (5%)
Query: 26 IWTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I T+++ ++G+++ I D+R + N + FFAI G FD H+F+ L
Sbjct: 3 IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTI--NSGELFFAIKGDRFDGHDFVMDAL 60
Query: 83 YGKGCVGVIGNQVC---NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ V+ N+ NN D V + G +T +L ++A Y R S F ++G+TG
Sbjct: 61 RAEAVGAVVDNEQVERYNNVDSDEVII---GVEDTTRALQDLAEYYR-SLFDIPVIGITG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK ++A LE+ ++ GN+NN G+ L+L +D + V+E+ M G G+
Sbjct: 117 STGKTTTKDLVASVLET-KFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGD 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L ++A+P+I VV NVG +HLE LGS E++A+AK E+ + +LN DD V
Sbjct: 176 IKTLCQIAQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQ 235
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ +++G G +++ A++V N G
Sbjct: 236 MADETKAEILYYGRESGNNLQ--ASRVDNLG 264
>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides DSM 2048]
gi|423485534|ref|ZP_17462216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BtB2-4]
gi|423491259|ref|ZP_17467903.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER057]
gi|423501945|ref|ZP_17478562.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER074]
gi|423602240|ref|ZP_17578240.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD078]
gi|423665254|ref|ZP_17640393.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM022]
gi|423671680|ref|ZP_17646684.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM034]
gi|423672516|ref|ZP_17647455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM062]
gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides DSM 2048]
gi|401151509|gb|EJQ58958.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER074]
gi|401161713|gb|EJQ69076.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER057]
gi|401226141|gb|EJR32682.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD078]
gi|401290578|gb|EJR96270.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM022]
gi|401291501|gb|EJR97172.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM034]
gi|401311622|gb|EJS16908.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM062]
gi|402441493|gb|EJV73448.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BtB2-4]
Length = 458
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 137/261 (52%), Gaps = 22/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + ++GVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCD 278
VP V FG R D
Sbjct: 233 RVPEMNLAAETVTFGDARAND 253
>gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. NF 2653]
gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. NF 2653]
Length = 481
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna BVS033A4]
gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna BVS033A4]
Length = 454
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 135/259 (52%), Gaps = 13/259 (5%)
Query: 26 IWTINEIAESV-NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ TI E+ ++ N K GI TDTR + K+ F A+ G +FD +I
Sbjct: 6 LKTITELTNTIINEKYHDIMVKGI-STDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ N D ++V+ NT ++++A S ++ +TGS GK+
Sbjct: 63 GASCCVVNRDYRNINDYPVIEVD-----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +++ L+ V ++ N+NN +G++ ++ ID ++AVLEMG GEI +L
Sbjct: 117 TTKDIMSSLLKE-KYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLT 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P+I ++ N+GDSHL +L + E++ARAK EI + K + +LN DDP++ +
Sbjct: 176 NIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEY 235
Query: 265 GV--RKVFFGWRRGCDVRL 281
+ + + FG + D R+
Sbjct: 236 KLPEKNITFGIKPDSDYRM 254
>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis 1330]
gi|376281098|ref|YP_005155104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Brucella
suis VBI22]
gi|384225092|ref|YP_005616256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Brucella
suis 1330]
gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis 1330]
gi|343383272|gb|AEM18764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis 1330]
gi|358258697|gb|AEU06432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis VBI22]
Length = 481
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sphingopyxis alaskensis RB2256]
gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sphingopyxis alaskensis RB2256]
Length = 459
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 122/265 (46%), Gaps = 18/265 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+P+WT IA++ G + D+R + + F A+ G++ D H FI
Sbjct: 2 TTPLWTARTIAQATGGIASADFTVSGVAFDSREV--TRGDLFIAMKGENADGHSFID--- 56
Query: 83 YGKGCVGVIGNQVCNNW-DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
K VC D V+V + LN+L A +R G ++GVTGS
Sbjct: 57 --KAIAAGAAGIVCETAIDHPHVRVADS--AAALNAL----GTASRARSHGRIIGVTGSA 108
Query: 142 GKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ TK + AL+ +S ++NN VGV LSL + D + EMGM+ GE+
Sbjct: 109 GKTGTKEALFAALDRFRPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGEL 168
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+ RP + +V + +H+E GS E +A AKGEIF+ + G ++ D P A L
Sbjct: 169 AALTRIVRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGTAIIPFDSPHYARL 228
Query: 261 TVP---RGVRKVFFGWRRGCDVRLV 282
V FG G DVR V
Sbjct: 229 RAKAEQHAAHIVSFGLAEGADVRAV 253
>gi|390167628|ref|ZP_10219610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
indicum B90A]
gi|389589797|gb|EIM67810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
indicum B90A]
Length = 458
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 129/273 (47%), Gaps = 24/273 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT EIA++ G + P + + D+R + F A+ G+ D H F+ + +
Sbjct: 4 LWTSEEIAQATGG--VASAPFAVSGVAFDSREV--TGGDLFVAMKGEATDGHRFVD-KAF 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSV 141
G+G G I +Q +V +S + R SR G +VGVTGSV
Sbjct: 59 GQGAAGAIVSQPIAQP-----------HVLVPDSAAALEALGRASRARMQGKVVGVTGSV 107
Query: 142 GKSTTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ TK + AL+ + V +S ++NN VGV LSL + R V EMGM+ GE+
Sbjct: 108 GKTGTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGEL 167
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R RP + +V + +H+E G+ E +A AK EIF+ + G V+ D P VA L
Sbjct: 168 AALTRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATL 227
Query: 261 TV---PRGVRKVFFGWRRGCDVRLVAAQVANGG 290
R + FG+ DVR A GG
Sbjct: 228 YAKAEKHAARILTFGFDPQADVRARETVPAAGG 260
>gi|419720359|ref|ZP_14247595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum F0468]
gi|383303459|gb|EIC94908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum F0468]
Length = 457
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 14/240 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQV 106
I D+R KN F + G+ DAH+F+ +Y GC I ++ + D V V
Sbjct: 29 IVIDSR--EATKNSLFVPVVGERNDAHKFLEA-VYTAGCRVAISSRKDIFLKPDFNVVLV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E NT +L ++ Y R S+ S LVG+TGSVGK+TT+ M+ALAL L VF++
Sbjct: 86 E-----NTTKALQDLGTYLR-SKLSLPLVGITGSVGKTTTREMVALALSDL--KVFKTPN 137
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+N+++GV +++ I+ +I V+E+GMS GE+ +A++ + + VV N+G +H+E+L
Sbjct: 138 NFNSQLGVPVTISRINDE-EIGVIELGMSMFGEMERIAKIVKCDCAVVTNIGTAHIENLH 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E++ K I K G V LNAD+ +++ G+ FF + D A +
Sbjct: 197 TKENIRSEKFHIMDGMKAGSVVFLNADNDMLSTPPKREGIIYKFFSAKGNTDCDYYATDI 256
>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanothece sp. ATCC 51142]
gi|354552396|ref|ZP_08971704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. ATCC 51472]
gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
sp. ATCC 51142]
gi|353555718|gb|EHC25106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. ATCC 51472]
Length = 452
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
++ EI++ ++ K++ I TDTR + +N F A+ G FD H F + + KG
Sbjct: 13 SLKEISQPLSNKLINE-----INTDTRNIT--ENDIFLALKGDKFDGHLF-AEKAIDKGA 64
Query: 88 VGVIGN-QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
+ +I N ++ N K Q+ +TL + +A + RN + ++G+TGSVGK+TT
Sbjct: 65 IALILNHKISVNSTKKIPQIIVK---DTLIAYQEIANWWRN-KVKIPIIGITGSVGKTTT 120
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K +I+ L G V ++ N+NN +GV +L+ I + D AV+EM M +GEI L+++
Sbjct: 121 KELISAVLGVYG-KVHKTQANYNNEIGVPKTLLAITTSDDYAVIEMAMRARGEIALLSQI 179
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
A P I ++ NVG +H+ LGS E +A AK E+ E + +LN DD
Sbjct: 180 ACPTIGIITNVGTAHIGRLGSREAIAEAKCELLAEMPTDSIAILNHDD 227
>gi|402824960|ref|ZP_10874291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Sphingomonas sp. LH128]
gi|402261536|gb|EJU11568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Sphingomonas sp. LH128]
Length = 278
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 130/269 (48%), Gaps = 16/269 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W + IA +V G+ + D+R + P FFA+ G+ D H F+
Sbjct: 22 LWDADAIARAVKGEASTDFTVSGVEIDSRDVQPG--DLFFALKGEAMDGHRFVEAAFAKG 79
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
V+ V D + VE +T+ +L + AR R G ++GVTGSVGK+
Sbjct: 80 AAAVVVDRPV----DGPHILVE-----DTMEALERLGAAAR-LRARGPIIGVTGSVGKTG 129
Query: 146 TKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
K MI AL+ S + +S ++NN VGV LSL + + EMGM+ GEI L
Sbjct: 130 VKEMIFAALDRSSRGDAHRSVKSYNNHVGVPLSLARMPSRARYGIFEMGMNHAGEIAALT 189
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL---T 261
R RP + ++ + +H+E LGS E +A AK EIF+ + G V+ AD P L
Sbjct: 190 RQVRPNVALITTIAPAHIEMLGSEEAIADAKAEIFEGLEEGGTAVIPADSPHFLRLRDAA 249
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ G + V FG DVRL+ A A GG
Sbjct: 250 LALGAKVVSFGKAADADVRLLDAVPAIGG 278
>gi|417925543|ref|ZP_12568962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna SY403409CC001050417]
gi|341591169|gb|EGS34377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna SY403409CC001050417]
Length = 454
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 11/235 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + K+ F A+ G +FD +I V+ N D ++V+
Sbjct: 29 ISTDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRDYRNINDYPVIEVD- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT ++++A S ++ +TGS GK+TTK +++ L+ V ++ N+
Sbjct: 86 ----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKTTTKDIMSSLLKE-KYKVVKTQKNY 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G++ ++ ID ++AVLEMG GEI +L +A P+I ++ N+GDSHL +L +
Sbjct: 140 NNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTK 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV--RKVFFGWRRGCDVRL 281
E++ARAK EI + K + +LN DDP++ + + + + FG + D R+
Sbjct: 200 ENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLPEKNITFGIKPDSDYRM 254
>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus WK1]
gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus WK1]
Length = 458
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 122/211 (57%), Gaps = 12/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ TDTR + + + + G F+ H+F+ E + KG + ++ N D + V
Sbjct: 30 VSTDTRTI--ERGNLYVPLKGATFNGHQFVK-EAFEKGAAAALWSKHEPNAPTDVPLIFV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E ++L +L +A +A + ++GVTGS GK+TTK MIA L ++ V ++ G
Sbjct: 87 E-----DSLVALQQLA-HAYRKQLRACIIGVTGSNGKTTTKDMIASLLGTV-YRVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ + + AV+EMGMSG GEI L+ +A P++ ++ N+G+SHL+ LG
Sbjct: 140 NLNNHIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLSTLAEPDVSIITNIGESHLQELG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A AK EI + K + + + D+PL+
Sbjct: 200 SREGIATAKFEIVKGLKRDGLFIYHGDEPLL 230
>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Clostridium cf. saccharolyticum K10]
Length = 476
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG----------NQVCNN 98
I D+R K F + G+ D H FI L +G V
Sbjct: 29 ISIDSR--TAGKKALFVPLIGEKQDGHRFIMAALE-QGAAAVFTSEHSEESEEVKAAAKR 85
Query: 99 WD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
W F+QV+ +T +L + Y R SR + LVG+TGSVGK+TT+ M+A AL S
Sbjct: 86 WPGAAFIQVD-----DTRRALQELGAYIR-SRLTIPLVGITGSVGKTTTREMVAAAL-SA 138
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G +VF++ N N++VGV L+L I +I VLE+GMS GE+ +A++A ++ V+ NV
Sbjct: 139 GFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNV 198
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
G +H+E+LG+ E++ R K +I + LN D+ L+ G + V+FG
Sbjct: 199 GVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENA 258
Query: 278 DVRLVAAQVANG 289
D R V ++ G
Sbjct: 259 DYRAVDIRLERG 270
>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium bifidum S17]
gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium bifidum S17]
Length = 519
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 140/276 (50%), Gaps = 23/276 (8%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 11 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 68
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 69 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRTVGTPFTLI 124
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 125 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG 289
VA + P+G VF+ G D A A+G
Sbjct: 244 HVATMAPLAPQG--HVFWFGMAGDDAEASAGNAASG 277
>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
Length = 481
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 14/234 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDD 234
>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. M62/1]
gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. M62/1]
Length = 480
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG----------NQVCNN 98
I D+R K F + G+ D H FI L +G V
Sbjct: 33 ISIDSR--TAGKKALFVPLIGEKQDGHRFIMAALE-QGAAAVFTSEHSEESEEVKAAAKR 89
Query: 99 WD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
W F+QV+ +T +L + Y R SR + LVG+TGSVGK+TT+ M+A AL S
Sbjct: 90 WPGAAFIQVD-----DTRRALQELGAYIR-SRLTIPLVGITGSVGKTTTREMVAAAL-SA 142
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G +VF++ N N++VGV L+L I +I VLE+GMS GE+ +A++A ++ V+ NV
Sbjct: 143 GFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNV 202
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
G +H+E+LG+ E++ R K +I + LN D+ L+ G + V+FG
Sbjct: 203 GVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENA 262
Query: 278 DVRLVAAQVANG 289
D R V ++ G
Sbjct: 263 DYRAVDIRLERG 274
>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. BO2]
gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. BO2]
Length = 481
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|423620165|ref|ZP_17595996.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD115]
gi|401248890|gb|EJR55209.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD115]
Length = 458
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 26/263 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLFALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++A P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLACPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCD 278
N VP V FG R D
Sbjct: 232 N-RVPEMNLATETVTFGDARAND 253
>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Symbiobacterium thermophilum IAM 14863]
gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Symbiobacterium thermophilum IAM 14863]
Length = 521
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 127/250 (50%), Gaps = 12/250 (4%)
Query: 26 IWTINEIAESVNGKILKWGP-PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T EIA G++ P G+ I D+R++ P F A+ G+ D H+F +
Sbjct: 4 LFTAAEIAALTGGRLAAGDPNAGVSGIAWDSRLVRPG--DCFVALAGERADGHDFAAQAA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
V+ + D V + + +A +R+ +VG+TGSVG
Sbjct: 62 ARGAAC-VLAARPVPAGDAAVVVCP---DPLLGLGRLGLALRSRHPHLR--VVGITGSVG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M A L VF++ GN N+ VG+ SL G+ + AVLEMGM GEI
Sbjct: 116 KTTTKEMTAAVLAER-FRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAY 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +ARP++ VV NVG +HLE LG+ E++A AK E+ + V VLNADDP V +
Sbjct: 175 LASIARPQVGVVTNVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAA 234
Query: 263 PRGVRKVFFG 272
R F+G
Sbjct: 235 ATPARVWFYG 244
>gi|392397284|ref|YP_006433885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flexibacter litoralis DSM 6794]
gi|390528362|gb|AFM04092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flexibacter litoralis DSM 6794]
Length = 453
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 11/219 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
I TDTR + KN FFA+ G +FD ++F L G V V V +D+ Q
Sbjct: 17 ISTDTR--SVKKNDLFFALKGDNFDGNKFAYQALEKGASHVVVDDASVIPAFDEHNKQKL 74
Query: 108 GNGNV-----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
N N L SL +A + R +F+ +G+TGS GK+TTK ++ L S +
Sbjct: 75 AYKNQYLLVDNVLESLQKLANFHR-KQFTIPFIGITGSNGKTTTKELLRSVL-SQKFKTY 132
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
+ GN NN +GV L+++ + + +IA++EMG + G+I EL ++A P ++ N+G+SHL
Sbjct: 133 STEGNLNNHIGVPLTILRMPKNTEIAIIEMGANKVGDIAELCKIAEPNFGMITNIGNSHL 192
Query: 223 ESLGSLEDVARAKGEIFQES-KLGDVCVLNADDPLVANL 260
E GS E V R K E++Q K +N+DD ++ N+
Sbjct: 193 EGFGSYEGVLRGKTELYQSLIKNNGTVFINSDDSVLMNM 231
>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 457
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 18/242 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQV 106
I D+R NKN F + G+ DAH+F+ +Y GC I ++ + + D V V
Sbjct: 29 IVIDSR--EANKNSLFVPVVGEKNDAHKFLES-VYDAGCRVAISSRKDIFSKPDFNIVLV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +T+ +L ++ Y R S+ S LVGVTGSVGK+TT+ M ALAL L VF++
Sbjct: 86 E-----DTIKALQSLGIYLR-SKLSLPLVGVTGSVGKTTTREMTALALSDL--KVFKTPN 137
Query: 167 NWNNRVGVALSLIGIDRAVD--IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+N+++GV ++ I R D I ++E+GMS GE+ +A++ + ++ N+G +H+E+
Sbjct: 138 NFNSQLGVPVT---ISRITDEEIGIIELGMSLFGEMERIAKIVGCDSAIITNIGTAHIEN 194
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
L + E++ K I K G V LNAD+ +++N G+ FF + D A
Sbjct: 195 LHTKENIRSEKFHIMDGMKAGSVVFLNADNDMLSNPPKREGIIYKFFSAKGNTDCDYYAT 254
Query: 285 QV 286
+
Sbjct: 255 DI 256
>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Hydrogenobacter thermophilus TK-6]
gi|384129775|ref|YP_005512388.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Hydrogenobacter thermophilus TK-6]
gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Hydrogenobacter thermophilus TK-6]
gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
thermophilus TK-6]
Length = 436
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 116/203 (57%), Gaps = 11/203 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-VCNNWDKGFVQVE 107
C D+R + + F A+ G D H+F + E + +G VG I + + K +V V+
Sbjct: 27 FCIDSREV--KEGNVFVALRGGRHDGHDF-AQEAFSRGAVGAIVQRGIKVPKGKFYVLVD 83
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A Y R F+G ++GV GS GK+TTK MIA L +G V ++ N
Sbjct: 84 -----DTLEALRRIALY-RRRLFTGRVIGVAGSAGKTTTKEMIAFLLSKIG-KVCKTPKN 136
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+N+++G+ S+ + V+EMG S KG++ L ++A+P +RV+ +G+ HLE+ G
Sbjct: 137 YNSQIGLPFSIANFEEDCQFWVVEMGASQKGDVKNLVKLAKPHVRVITAIGEEHLETFGC 196
Query: 228 LEDVARAKGEIFQESKLGDVCVL 250
L+DV GEIF++ + DV VL
Sbjct: 197 LDDVIVGNGEIFEDMQERDVAVL 219
>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechloromonas aromatica RCB]
gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechloromonas aromatica RCB]
Length = 456
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 132/230 (57%), Gaps = 10/230 (4%)
Query: 27 WTINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
W ++++A++V G+++ + TDTR A + Q F A+ G++FDAH+F++P +
Sbjct: 3 WLLSQVAQAVQGRLIGADVSIDGVSTDTR--AITEGQLFIALAGENFDAHDFLAPAIAAG 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ ++ V V+ +T +L +A R ++F+ ++ VTGS GK+T
Sbjct: 61 ATALMVADESKVPTGVPAVVVD-----DTRLALGRLAAAWR-AKFNLPVIAVTGSNGKTT 114
Query: 146 TKSMIALALES-LGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TK M+A L++ G V + GN NN +G+ L+L+G+ + AV+EMGM+ GEI LA
Sbjct: 115 TKEMVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYLA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ P + ++ N +HLE +G L++VAR KG IF V V+NADD
Sbjct: 175 PIGAPTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADD 224
>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9719]
gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9719]
Length = 452
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 119/212 (56%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 476
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 13/253 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
W++ +A GK++ PG I TD+R + P + I G D H+FI
Sbjct: 18 WSVEAVAAITQGKVVH---PGAAIHGIATDSRQVKPR--DLYIPIIGARNDGHDFIDAAC 72
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ + W +G + G +T ++ +A A +R+ +V VTGS G
Sbjct: 73 ANGAAAVLCDSDHLPAW-QGKIDAGIVGVADTFEAMRALAA-ANRARYDIPVVAVTGSAG 130
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK +IA L S+G ++ GN+NN VGV L+L + A + AV+EMGM+ GEI
Sbjct: 131 KTTTKDLIASVL-SMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIAR 189
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
RP I V+ N+G +HLE+LGS E+ +AK EIF + D+ ++N DDP + + V
Sbjct: 190 SIGEVRPHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDIALINGDDPYLRRI-V 248
Query: 263 PRGVRKVFFGWRR 275
R R V G R
Sbjct: 249 ARDYRVVRVGIRE 261
>gi|347538007|ref|YP_004845431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudogulbenkiania sp. NH8B]
gi|345641184|dbj|BAK75017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudogulbenkiania sp. NH8B]
Length = 453
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 116/210 (55%), Gaps = 12/210 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R P F A+ G+HFDAH+F++ ++ +G G + Q VQV+
Sbjct: 25 VVTDSRAAGPG--DLFVALKGEHFDAHDFVA-DVLAQGAAGALVRQDFALPGAALVQVD- 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA--LALESLGVNVFQSYG 166
+T +L +A R +RF LVG+TGS GK+T K M+ LA + V + G
Sbjct: 81 ----DTRLALGRLAAGWR-ARFELPLVGITGSNGKTTVKEMLTAILAAHAGRDTVLATAG 135
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL-ESL 225
N+NN +G+ L+L+G++ AV+EMGM+ GEI L +ARP + +V N +HL
Sbjct: 136 NFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTGLARPRVALVNNALRAHLGGGF 195
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDP 255
D+ARAK EIF+ V V+NADDP
Sbjct: 196 SGTADIARAKSEIFEGLAEDGVAVINADDP 225
>gi|422346530|ref|ZP_16427444.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium perfringens WAL-14572]
gi|373226075|gb|EHP48402.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium perfringens WAL-14572]
Length = 453
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 127/220 (57%), Gaps = 18/220 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++ E +
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LEAF 60
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++VE NT +L+++A + R + +VG+T
Sbjct: 61 NKGAKIAIVDEVKCDLNELKEDVALIKVE-----NTGRALMDLAKFYR-EKLGLKVVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 115 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 174 QIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sputigena Capno]
gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sputigena Capno]
Length = 443
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +A K +FA+ G F+ + F + E KG + ++V + V
Sbjct: 14 VSTDTRNIA--KGSIYFALKGASFNGNTF-AAEALEKGAQYAVIDEVAYQTSDKMILVS- 69
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y RN+ +++G+TGS GK+TTK +I L S +NV + GN
Sbjct: 70 ----DVLTTLQELATYHRNT-LKTLVIGITGSNGKTTTKELIKSVL-SQQLNVVATQGNL 123
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A+P+ + ++G +HLE GS
Sbjct: 124 NNNIGVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSF 183
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGWRRGCDV 279
E V + KGE++ K ++ NAD+P+ L FG +G +V
Sbjct: 184 EGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYD-NDYSFGVGKGVNV 234
>gi|373106178|ref|ZP_09520481.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Stomatobaculum longum]
gi|371652553|gb|EHO17961.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Stomatobaculum longum]
Length = 471
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 10/266 (3%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI E+ G++L + I D+R + + F + G+ DAH F+ P +
Sbjct: 6 IDEIREATGGELLCGREEEKISYISIDSRDV--KEGTLFVPLVGEKVDAHRFLEP-VIAA 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA--RNSRFSGVLVGVTGSVGK 143
G V + G + ++L+ + A SR S L+GVTGSVGK
Sbjct: 63 GAKAVFTAEALTEAQHEAAAEAGTAVIRVADTLIALQALAGWLRSRLSLPLIGVTGSVGK 122
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT+ MIA AL S VF++ N N+++GV L+L+ I+ +I V+EMG+S GE+ +
Sbjct: 123 TTTREMIAAAL-SAKYRVFKTKANHNSQIGVPLTLLDIEDE-EIGVIEMGISRPGEMHII 180
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ + RP VV N+G +HL LGS E++ K +I + + NADD ++ + V
Sbjct: 181 SELVRPAAAVVTNIGTAHLMELGSRENIRDEKLKIQDGMQKDALLFRNADDAMLLSGQVR 240
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANG 289
G+ +G G D R + NG
Sbjct: 241 DGITARTYGLAEGADCRAENVGLVNG 266
>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella suis ATCC 23445]
gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella suis ATCC 23445]
Length = 481
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 ADAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
proteobacterium HTCC2080]
gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
proteobacterium HTCC2080]
Length = 456
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 13/255 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F AI G D H+++ L ++ QV + + V +
Sbjct: 31 LAIDSRQVKPG--DLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVSSALPQLIVS-DS 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ T ++ A + G+LVG+TGS GK+T K+M+A L G +V + GN
Sbjct: 88 EAALQTFGAMTRAA-------YDGILVGITGSAGKTTAKNMLAEILSRAG-SVVATKGNQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L ++ + AVLE+G G+I L MARP I ++LNV +HL + GSL
Sbjct: 140 NNELGVPLTLADLNNDTEYAVLELGAGKPGDIARLCEMARPNIAILLNVAPAHLANFGSL 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQVA 287
+ +++ KG + + + V+NADDP V + V R + FG D + + Q+
Sbjct: 200 DAISKTKGALLDDLPADGLAVINADDPRVFDWHVRASPTRCLTFGMNCKADYQAIDLQL- 258
Query: 288 NGGLGVQVVLEKERE 302
G G VL+ +
Sbjct: 259 KGFSGSDFVLQTPEQ 273
>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum anthropi ATCC 49188]
gi|404318793|ref|ZP_10966726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum anthropi CTS-325]
gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum anthropi ATCC 49188]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT N++ E++ G+ P GI I D+R L P + FFAI G+ FD H+F++ +
Sbjct: 5 LWTSNDMVEAMEGRPFGNLPGGITGISIDSRSLKPG--EAFFAIKGEQFDGHDFVTSAMA 62
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L + +R +R ++ VTGS
Sbjct: 63 AGAGLLVVAEHRLPAFGNSKVPMIVVE-----DVLEALTKLGIASR-ARSKAQIIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + D V E+GM+ EI
Sbjct: 117 VGKTTTKEALRHVLSEVG-KVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 176 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQL 235
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 236 EELAEKAGVEHIATFGENARSDYRL 260
>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseibium sp. TrichSKD4]
gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseibium sp. TrichSKD4]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 23/241 (9%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI-------ICTDTRILAPNKNQWFFAITGQHFDAH 75
N+P+WT ++ NG P G I D+R + + FFAI G FD H
Sbjct: 2 NAPLWTRDDFIAGANGT-----PKGELGQDITGISIDSRTI--EVGEAFFAIKGDRFDGH 54
Query: 76 EFISPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
+F+ L V V+ ++ ++ V+ + L ++ +A +R +R +
Sbjct: 55 DFVGTALANGASVAVVSADKLDSLPSTGRYLIVD-----DPLAAMERLAVASR-ARSNAR 108
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
+V VTGSVGK+ TK + LAL G V S ++NN GV L+L + VD V E+G
Sbjct: 109 IVAVTGSVGKTGTKEALRLALGRSG-KVHASVASFNNHWGVPLTLARMPADVDFGVFEIG 167
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
MS GEI L RM RP + + V HLE S+E +A+AK EIF+ + G V +LN D
Sbjct: 168 MSAPGEITPLVRMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRD 227
Query: 254 D 254
+
Sbjct: 228 N 228
>gi|27808668|sp|O33804.2|MURF_STRTO RecName: Full=Probable
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
Length = 446
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 137/260 (52%), Gaps = 21/260 (8%)
Query: 29 INEIAESVNGKI----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIAE V GK + P ++ D+R P F A G+H D H++ E G
Sbjct: 6 LGEIAEIVGGKATGESVTVTAPAVL--DSRQAEPGG--LFVAFAGEHADGHDYA--ERAG 59
Query: 85 K-GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVG 142
+ G V V+G++ + V VE +V T +L +A + G+ +VGVTGS G
Sbjct: 60 RAGAVAVLGSRPTSLP---TVVVE---DVRT--ALQTLAAHVVARLRDGLTVVGVTGSQG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+ TK ++A L G V + G+ NN +GV L+++ A VLEMG +G+I E
Sbjct: 112 KTGTKDLLAAVLSGAGPTV-ATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAE 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + P+I VVLNVG +HL GS +ARAKGE+ Q G VLNADDP VA+++V
Sbjct: 171 LTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASMSV 230
Query: 263 PRGVRKVFFGWRRGCDVRLV 282
+ FG DV+++
Sbjct: 231 LTDGPVLTFGRTDPADVQVL 250
>gi|421735798|ref|ZP_16174684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum IPLA 20015]
gi|407296912|gb|EKF16408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum IPLA 20015]
Length = 519
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 140/276 (50%), Gaps = 23/276 (8%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 11 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 68
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 69 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRTVGTPFTLI 124
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 125 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG 289
VA + P+G VF+ G D A A+G
Sbjct: 244 HVAAMAPLAPQG--HVFWFGMAGDDAEASAGNAASG 277
>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ATCC 53516]
gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ATCC 53516]
Length = 454
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 13/268 (4%)
Query: 26 IWTINEIAESV-NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ TI E+ ++ N K GI TDTR + K+ F A+ G +FD +I
Sbjct: 6 LKTITELTNTIINEKYHDIMVKGI-STDTRTIE--KDNMFIALRGDNFDGQNYIEMAFEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ N D ++V+ NT ++++A S ++ +TGS GK+
Sbjct: 63 GASCCVVNRDYRNINDYPVIEVD-----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +++ L+ V ++ N+NN +G++ ++ ID ++AVLEMG GEI +L
Sbjct: 117 TTKDIMSSLLKE-KYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLT 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P+I ++ N+GDSHL +L + E++ARAK EI + K + +LN DDP++ +
Sbjct: 176 NIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPVLREVKQEY 235
Query: 265 GV--RKVFFGWRRGCDVRLVAAQVANGG 290
+ + + FG + D R+ + G
Sbjct: 236 KLPEKTISFGIKPDSDYRMEMIKADETG 263
>gi|373469049|ref|ZP_09560266.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium oral taxon 082 str. F0431]
gi|371765141|gb|EHO53487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium oral taxon 082 str. F0431]
Length = 457
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 131/236 (55%), Gaps = 20/236 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQV 106
I D+R NKN F + G+ DAH+F+ +Y GC I ++ + D V V
Sbjct: 29 IVIDSR--EANKNSLFVPVVGERNDAHKFLEA-VYTDGCKVAISSRKDIFLKPDFNIVLV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E NT +L ++ Y R S+ S LVG+TGSVGK+TT+ M+ALAL L VF++
Sbjct: 86 E-----NTTKALQDLGIYLR-SKLSLPLVGITGSVGKTTTREMVALALSDL--KVFKTPN 137
Query: 167 NWNNRVGVALSLIGIDRAVD--IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+N+++GV ++ I R D I V+E+GMS GE+ +A++ + + +V N+G +H+E+
Sbjct: 138 NFNSQLGVPVT---ISRITDEEIGVIELGMSMFGEMERIAKIVKCDCAIVTNIGTAHIEN 194
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR--RGCD 278
L + E++ K I K G V LNAD+ ++ + G+ FF + + CD
Sbjct: 195 LHTRENIRSEKFHITDGMKSGSVMFLNADNDMLWDPPKKEGIIYKFFSAKGNKDCD 250
>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter italicus Ab9]
gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter italicus Ab9]
Length = 461
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 149/278 (53%), Gaps = 21/278 (7%)
Query: 29 INEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI + GK++K I TD+R K++ F + G+ +D +F+ + K
Sbjct: 6 IAEIVRATQGKLIKGSLKDKIIGISTDSR--KVKKDELFIPLKGEKYDGEDFVKDAM-TK 62
Query: 86 GCVGVIGNQVCN-NWDKGF----VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G V+ ++ N + K F + V +TL +L +A Y R +F+ V VTGS
Sbjct: 63 GAKAVLTARLDNIEYLKDFPFNIIYVN-----DTLEALHKIAYYYR-KKFNIPFVAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 TGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + +P++ V N+G +H+E LGS E++ +AK E+ ++ K +V VLNADD ++ +
Sbjct: 176 RRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLLKI 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ +G + G + A + G G++ L+
Sbjct: 236 LQQYSSKYYRYGIKSG---EIKACDIEKGEKGIEYTLK 270
>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Synechococcus sp. PCC 7335]
gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Synechococcus sp. PCC 7335]
Length = 455
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 8/206 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + + F A+ G+ FD HEF + + KG + I + + ++E
Sbjct: 34 VTTDTRTV--QAGELFVALVGETFDGHEF-AKQAVEKGAIATIVKKGVFSKTVTLPRIE- 89
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R S+ + +V +TGSVGK+TTK ++A AL G VF++ N+
Sbjct: 90 --VTDTLAAYQTLGQWWR-SQCAIPVVAITGSVGKTTTKELVAAALSQFG-TVFKTRANY 145
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+G+ D AV+EMGM G EI L ++A+P + ++ NVG +H+ LGS
Sbjct: 146 NNEIGVPKTLLGLTTEHDYAVVEMGMRGLEEIALLTQIAKPTVALITNVGTAHIGRLGSR 205
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+A+AK E+ +E VLN DD
Sbjct: 206 AAIAQAKCELLRELPTDGTAVLNHDD 231
>gi|421734358|ref|ZP_16173431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum LMG 13195]
gi|407077649|gb|EKE50482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum LMG 13195]
Length = 519
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 140/276 (50%), Gaps = 23/276 (8%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 11 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 68
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 69 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRAVGTPFTLI 124
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 125 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG 289
VA + P+G VF+ G D A A+G
Sbjct: 244 HVAAMAPLAPQG--HVFWFGMDGDDAEASAGNAASG 277
>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
[Bifidobacterium bifidum PRL2010]
gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium bifidum PRL2010]
Length = 513
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 140/276 (50%), Gaps = 23/276 (8%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 5 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 62
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 63 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRAVGTPFTLI 118
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 119 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 177
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 178 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 237
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG 289
VA + P+G VF+ G D A A+G
Sbjct: 238 HVAAMAPLAPQG--HVFWFGMAGDDAEASAGNAASG 271
>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfotomaculum reducens MI-1]
gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfotomaculum reducens MI-1]
Length = 457
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 131/238 (55%), Gaps = 13/238 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+TI EIA+ + G +L+ P I TD+R P + F A+ GQ D H+F +
Sbjct: 4 YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPR--ELFVALQGQQADGHDFARKAIE 61
Query: 84 GKGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
++ ++ + V V+ NTL +L +A + R SR + +V VTGS G
Sbjct: 62 QGASALLVSREITGIAPQIPVVLVK-----NTLQALQQLASHNR-SRLNIPVVAVTGSNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK MIA L + ++ GN+NN +G+ L+L+G+ +AV+EMGM G GEI
Sbjct: 116 KTSTKDMIAAVLNTR-FKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDF 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A+P V+ N+G++HLE LGS+E++A AK E+ +LNAD P + L
Sbjct: 175 LAGLAKPTGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGEL 232
>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aeromicrobium marinum DSM 15272]
gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aeromicrobium marinum DSM 15272]
Length = 458
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 126/248 (50%), Gaps = 17/248 (6%)
Query: 35 SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94
+ +G+ GP I D+R + P F AI G+H D H + + +
Sbjct: 16 TAHGRARVTGPATI---DSRDVPPGG--LFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRP 70
Query: 95 VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
V V V + L+ A + R R S VG+TGS GK++TK ++A L
Sbjct: 71 VAAPH----VLVP---DATVALGLLARATHDRLDRLS--TVGLTGSSGKTSTKDLLAHVL 121
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
E L V + G++NN +GV L+++ D + V+EMG G+G I L R++ P++ VV
Sbjct: 122 EPLAPTVAPT-GSFNNELGVPLTVLRADPSTRYLVVEMGARGRGHIAALCRISPPDVAVV 180
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
LNVG +H GS++D A AKGE+ + G VLNADDP VA + + + FG
Sbjct: 181 LNVGTAHQGEFGSVDDTAVAKGELVEALGPGGTAVLNADDPRVAAMAGRTAGQVLTFG-- 238
Query: 275 RGCDVRLV 282
RG DVRLV
Sbjct: 239 RGGDVRLV 246
>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. WCH70]
gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. WCH70]
Length = 463
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 15/246 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + + + + G F+ H F+ + KG V+ + K +
Sbjct: 35 VSTDTRTI--QQGNLYVPLKGAKFNGHAFVQDAI-DKGASAVLWAETEGTPPKDVPVIIV 91
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +TL +L +A R + S ++G+TGS GK+TTK MIA AL + V ++ GN
Sbjct: 92 D---DTLRALQRLAHRYRK-QLSVKVIGITGSNGKTTTKDMIA-ALLATTYKVQKTEGNL 146
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ ++AV+EMGMS GEI L+ +A P+ V+ N+G+SHL+ LGS
Sbjct: 147 NNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIAEPDAAVITNIGESHLQELGSR 206
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVAN----LTVPRGVRKVFFGWRRGCDVRLVAA 284
E +A+AK EI K + V + D+PL+ N L +P V + FG D A
Sbjct: 207 EGIAQAKLEILSGLKKNGLFVYHGDEPLLVNRVPDLPLPEHVLR--FGQGSDNDYYPKAV 264
Query: 285 QV-ANG 289
V ANG
Sbjct: 265 HVQANG 270
>gi|386714172|ref|YP_006180495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacillus halophilus DSM 2266]
gi|384073728|emb|CCG45221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacillus halophilus DSM 2266]
Length = 453
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 119/216 (55%), Gaps = 19/216 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-------VCNNWDK 101
+ TDTR+ A K F I G++FDAH+FI + +G V + + V ++
Sbjct: 28 VLTDTRVEA--KQSLFIPIVGENFDAHDFIKDAI-KQGAVAALWQKDKDLPYAVPTDFPV 84
Query: 102 GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
FV+ +T L +A Y + +++G+TGS GK+TTK M A L S
Sbjct: 85 FFVE-------DTTKGLQEVAEYYLQ-KVRPLVIGITGSNGKTTTKDMTASVL-SRKYKT 135
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
++ GN+NN +G+ L+++ + ++ VLEMGM GEI L+++A P+ ++ N+G+SH
Sbjct: 136 HKTAGNYNNHIGLPLTILAMKEDTEVLVLEMGMDRAGEISVLSKLAHPKYAIITNIGESH 195
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+E+LGS E +A AK EI +++ D+PL+
Sbjct: 196 IENLGSREGIASAKLEIKDGMSEDGALIIDGDEPLL 231
>gi|433447994|ref|ZP_20411253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus TNO-09.006]
gi|431999626|gb|ELK20546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus TNO-09.006]
Length = 458
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 118/209 (56%), Gaps = 8/209 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + + + + G F+ HEF+ + + KG + ++ N K +
Sbjct: 30 VSTDTRTI--ERGNLYVPLKGATFNGHEFVR-QAFDKGATAALWSEHEPNAPKDVPLIFV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ ++ L L +A + ++GVTGS GK+TTK MIA L +L V ++ GN
Sbjct: 87 DDSLVALQQL----AHAYRKQLRTRVIGVTGSNGKTTTKDMIASLLGTL-YRVQKTEGNL 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + + AV+E+GMSG GEI L+ +A P++ V+ N+G+SHL+ LGS
Sbjct: 142 NNHIGVPLTLLRLKEETEYAVVEIGMSGFGEIELLSTLAEPDVAVITNIGESHLQELGSR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A AK EI + + + + + D+PL+
Sbjct: 202 EGIATAKFEIVKGLQRDGLLIYHGDEPLL 230
>gi|393772221|ref|ZP_10360678.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium sp. Rr 2-17]
gi|392722360|gb|EIZ79768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium sp. Rr 2-17]
Length = 492
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 128/274 (46%), Gaps = 18/274 (6%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S S +W IA +V G + D+R + P FFA+ G+ D H FI
Sbjct: 17 SPSVLWDAAAIARAVRGTASGDFTVSGVEIDSRDVQPG--DLFFALKGEAMDGHRFIDAA 74
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
V+ V D + VE +T +L + AR R G ++GVTGSV
Sbjct: 75 FAKGAAAVVVDRPV----DGPHILVE-----DTFAALERLGAAAR-LRARGPIIGVTGSV 124
Query: 142 GKSTTKSMIALALE--SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
GK+ K MI AL+ S G + +S ++NN VGV LSL + V EMGM+ GE
Sbjct: 125 GKTGVKEMIFAALDRASRG-DAHRSVKSYNNHVGVPLSLARMPGRARFGVFEMGMNHAGE 183
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L RP++ V+ + +H+E LGS E +A AK EIFQ + G V+ AD P A
Sbjct: 184 IASLTAQVRPQVAVITTIAPAHIEMLGSEEAIADAKAEIFQGLEAGGTAVIPADSPHFAR 243
Query: 260 LTVPR---GVRKVFFGWRRGCDVRLVAAQVANGG 290
L G V FG DVRL+ A GG
Sbjct: 244 LKAAALACGATVVSFGKSADADVRLLDTVSAIGG 277
>gi|376275952|ref|YP_005116391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis HSK A52141]
gi|363404519|gb|AEW14814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis HSK A52141]
Length = 481
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Elusimicrobium minutum Pei191]
gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Elusimicrobium minutum Pei191]
Length = 450
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 15/260 (5%)
Query: 28 TINEIAESVNGKILKWGP--P-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ A+ V+G+I++ P P TD+R L K F+A+ G+ FD + F+ +
Sbjct: 6 TLGSFAKIVDGRIIQGNPLMPFNAFITDSRKLT--KGDIFWALKGEKFDGNTFLQNAVDA 63
Query: 85 KGCVGVIGNQVCNNWD---KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
V + D V+VE NTL +L +A Y R R +V +TGS
Sbjct: 64 GASALVADKFFADKIDLKNTALVEVE-----NTLTALQTLAAYHRR-RSDLKVVAITGSN 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GKSTTK M+ ++ G + GN NN+ G+ SL+ ID V E+G S KG+IL
Sbjct: 118 GKSTTKQMLLSICKTSGP-ARANMGNLNNQFGLPFSLLEIDSKDKFGVFELGASKKGDIL 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
E+ + P++ ++ NV +HL+ L+ V K E+ G + V N+DD ++ L
Sbjct: 177 EIGKPTLPDVAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFGGILVFNSDDAMLKKLK 236
Query: 262 VPRGVRKVFFGWRRGCDVRL 281
+ + FG++ G D+++
Sbjct: 237 TEYKGKAISFGFKSGADLQI 256
>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus elongatus PCC 7942]
gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus elongatus PCC 7942]
Length = 455
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG-- 102
P + TD+R + P F A+ G FD H+F++ L ++ D
Sbjct: 28 PARSLTTDSRQIQPGD--IFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAG 85
Query: 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+QV+ NTL + +A R R S L+G+TGSVGK+TTK +IA L G V
Sbjct: 86 HLLQVD-----NTLWAYQEVARLWRQ-RCSLPLIGITGSVGKTTTKELIAAMLAVRG-PV 138
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVD-IAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
++ N+NN +GV +++ ID AVLEMGM G+G+I ELAR+A+P I V+ NVG +
Sbjct: 139 LKTEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTA 198
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVAN---LTVPR 264
H+ LGS + +A AK E+ + + +LNAD+ L+A L +PR
Sbjct: 199 HIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNHRLIATAQRLNLPR 246
>gi|387927980|ref|ZP_10130658.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus PB1]
gi|387587566|gb|EIJ79888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus PB1]
Length = 461
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 12/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ D+R + K F G++ D H F+ + KG + + N D + V
Sbjct: 30 VAIDSRKIK--KGNLFIPFKGENTDGHRFVEDAI-KKGAAAALWQKDVPNPPLDLPVLIV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A RN + +VG+TGS GK+TTK M A L S+ V ++ G
Sbjct: 87 E-----DTLRALQELARSYRN-ELNIKIVGITGSNGKTTTKDMTANLL-SIKYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ I ++AVLEMGMSG+GEI L ++ARP ++ N+G+SHL LG
Sbjct: 140 NFNNHIGLPLTVLSIKPETEMAVLEMGMSGRGEIEFLTKLARPNAVIITNIGESHLLDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A AK EI + + G + V + D+PL+
Sbjct: 200 SREAIADAKLEIIKGLEEGGLIVYHGDEPLL 230
>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis ATCC 23365]
gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis ATCC 23365]
Length = 481
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
Length = 481
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|394990711|ref|ZP_10383539.1| hypothetical protein SCD_03136, partial [Sulfuricella denitrificans
skB26]
gi|393790078|dbj|GAB73178.1| hypothetical protein SCD_03136, partial [Sulfuricella denitrificans
skB26]
Length = 244
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 12/210 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW-DKGFVQVE 107
+ TD+R +A F A+ G+ FD H ++ ++ +G V + + W D + V+
Sbjct: 25 VTTDSRAVA--AGDLFVALKGERFDGHNYVK-QVMEQGAVAALVERRDPAWGDFPLLLVK 81
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQSY 165
+ +L +A + R SRF+ +V +TGS GK+T K MIA L + V +
Sbjct: 82 -----DARLALGELAGHWR-SRFTIPVVALTGSSGKTTVKEMIAAILREQAGDQAVLATK 135
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+L+ + AV+EMGM+ GEI L+R+ARP++ +V+N +HL L
Sbjct: 136 GNLNNDIGMPLTLLELRDTHHYAVIEMGMNHPGEIAYLSRIARPDVALVINAQAAHLAGL 195
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDP 255
G++E VA AKGEIFQ V+N DDP
Sbjct: 196 GTVEAVAHAKGEIFQSLVANGTAVINVDDP 225
>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coprococcus catus GD/7]
Length = 456
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG-FVQVE 107
+ D+R + P F A G+ D H FI P+++ KG + VI +V D G + VE
Sbjct: 32 VVIDSRQIEPG--YIFVATKGERVDGHRFI-PDVFAKGALAVIC-EVLPEEDLGPCILVE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
++ +L A + R + + +VG+TGSVGK++TK IA L V ++ GN
Sbjct: 88 -----DSFMALKQAAAFYR-QQLNIRVVGITGSVGKTSTKEFIAAVLVE-KYKVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN VG+ L++ GI IAVLEMG++ GE+ L+ +ARP+I V+ N+G HLE+L
Sbjct: 141 YNNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEVARPDICVMTNIGQCHLENLID 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+ + RAK EIF ++N DD +A + G + FG + D + A +
Sbjct: 201 RDGILRAKSEIFDFMNPEGTVIVNGDDDKLATIHDVYGKAPITFGMNK--DNAIWADHIE 258
Query: 288 NGGL 291
N GL
Sbjct: 259 NRGL 262
>gi|418935063|ref|ZP_13488880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|377769296|gb|EHT93070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC128]
Length = 452
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R+++ KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSRVIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|428215736|ref|YP_007088880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria acuminata PCC 6304]
gi|428004117|gb|AFY84960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria acuminata PCC 6304]
Length = 457
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 116/210 (55%), Gaps = 16/210 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G FD H+FI + KG I D+ FV
Sbjct: 34 IITDTRSL--RAGEVFVALRGTQFDGHQFIGAA-FDKGATAAI-------VDRDFVSPHP 83
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ + +TL + +A + R ++F ++GVTGSVGK+TTK +I+ L + G V ++
Sbjct: 84 DWPLLVVPDTLAAYQAIAHWWR-TQFDIPVIGVTGSVGKTTTKELISAVLNTQG-PVLKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ + D AV+EM M GKGEI LA +A P I V+ NVG +H+E
Sbjct: 142 EKNYNNEIGVPKTLLNLTADHDYAVIEMAMRGKGEIALLAEIATPTIGVITNVGTAHIER 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADD 254
LGS +A AK E+ ++ + VLN D+
Sbjct: 202 LGSEAAIASAKCELLEKMSPEGIAVLNYDN 231
>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
Length = 488
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P G +CTD+R L F + G+ FD H F++ ++ + +G +
Sbjct: 54 PLGPVCTDSRRL--EAGALFVPLVGEQFDGHAFLADAARCGAQAALVAAGSNASLPEGLL 111
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
L ++ + + +V VTGS GK+TT+ +I AL SLG + S
Sbjct: 112 HWRVPDTTLAYQQLASL----HRQQLNAAVVAVTGSAGKTTTRELIRAALASLG-PIQAS 166
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N NN +GV L+L+G + V+EMGM G GEI L+R A+P+I V+ N+G +H+
Sbjct: 167 ASNNNNDIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERLSRCAQPDIAVITNIGTAHIGR 226
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK EI KL V V+ A DPL+
Sbjct: 227 LGSREAIAAAKCEITAALKLDGVVVIPAGDPLL 259
>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodomicrobium vannielii ATCC 17100]
gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodomicrobium vannielii ATCC 17100]
Length = 477
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 29/273 (10%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
P+WT EIA + L PP + D+R + + F AI G+ D H FI
Sbjct: 9 PLWTGAEIA-----RALGIAPPAADVVVTGVSIDSRTV--ERGDLFVAIKGERSDGHRFI 61
Query: 79 SPELYGKGCVGVI-----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
+ + G G + QV D+ +V+ + +L + AR +R
Sbjct: 62 T-AAFDNGAAGALVSRDYAPQVPLAADEPLFRVD-----DPFAALEELGRVAR-ARTDAR 114
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
+ VTGSVGK+TTK M+ + L G S ++NN +GV LSL + A V E+G
Sbjct: 115 IAAVTGSVGKTTTKEMLRVMLGESG-PTHASVKSYNNFMGVPLSLARMPAASRFGVFEIG 173
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
M+ GEI+ LA++ RP + +V V H+E S ++ARAK EIF+ + G +L AD
Sbjct: 174 MNHAGEIVPLAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPAD 233
Query: 254 DPLVANLTV---PRGVRKVFFGWRRGCDVRLVA 283
+P +L R R V FG + RLV+
Sbjct: 234 NPHFESLAAFARERSARVVPFGLSSEAEARLVS 266
>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pasteurella dagmatis ATCC 43325]
gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pasteurella dagmatis ATCC 43325]
Length = 461
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 132/228 (57%), Gaps = 14/228 (6%)
Query: 31 EIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
++AE +N K++ G + I TDTR + N FFA+ G++FDAH ++ + +G V
Sbjct: 8 KLAEILNAKLVGNGLVEVENISTDTRKMVVNS--LFFALKGENFDAHHYLDKAV-AQGAV 64
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
++ ++ ++ D + VE +T +L +A + R + + ++V +TGS GK+T K
Sbjct: 65 ALVVQKINSHLDVPQLVVE-----DTKIALGELAKWVRET-VNPLVVAMTGSSGKTTVKE 118
Query: 149 MIALALESLGVN---VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
M A L+ VN V + GN+NN +GV L+L+ + AV+E+G + +GEI
Sbjct: 119 MTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIAYTTS 178
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+A+P++ +V NV +HLE GS+E VA+AKGEI++ V ++N +
Sbjct: 179 LAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRGLPASGVAIINKE 226
>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
Length = 821
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 18/259 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ---VCNNWDKGFVQ 105
I D+R N F AI G+ D H FI+ +LY G I ++ V + F +
Sbjct: 28 IFIDSRNAVSNIKNLFIAIKGERHDGHNFIA-DLYSNGIRNFIIDEEIKVDKYPEANFFK 86
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E N++N+L +A Y R + F G L+G+TGS GK+ K +A +ES+ +V++S
Sbjct: 87 TE-----NSINALQALAGYKRKN-FKGNLIGITGSNGKTIVKEWLAKLIESV-YSVYRSP 139
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
++N++VGV LSL ++ D A++E G+S GE+ +L + +P+I + N+G +H E
Sbjct: 140 RSYNSQVGVPLSLWHLNHYQDYAIIEAGISKMGEMEKLEAIIKPKIGIYTNLGTAHDEGF 199
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGW--RRGCDVRL 281
SLE+ A K ++F++S C D P ++N ++P+ K F GW
Sbjct: 200 PSLEEKAHQKAQLFKDSSTIIFC---KDFPEISNALHSLPKLEEKEFIGWSFEDNTSNYF 256
Query: 282 VAAQVANGGLGVQVVLEKE 300
V + N G +++ E++
Sbjct: 257 VETEGRNNGTAIRIPFEEQ 275
>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Pseudogulbenkiania ferrooxidans 2002]
gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Pseudogulbenkiania ferrooxidans 2002]
Length = 453
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 116/210 (55%), Gaps = 12/210 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R P F A+ G+HFDAH+F++ ++ +G G + Q VQV+
Sbjct: 25 VVTDSRAAGPG--DLFVALKGEHFDAHDFVA-DVLAQGAAGALVRQDFALPGVALVQVD- 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA--LALESLGVNVFQSYG 166
+T +L +A R +RF LVG+TGS GK+T K M+ LA + V + G
Sbjct: 81 ----DTRLALGRLAAGWR-ARFELPLVGITGSNGKTTVKEMLTAILAAHAGRDTVLATAG 135
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL-ESL 225
N+NN +G+ L+L+G++ AV+EMGM+ GEI L +ARP + +V N +HL
Sbjct: 136 NFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTGLARPRVALVNNALRAHLGGGF 195
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDP 255
D+ARAK EIF+ V V+NADDP
Sbjct: 196 SGTADIARAKSEIFEGLAEDGVAVINADDP 225
>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens SM101]
gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens SM101]
Length = 453
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 18/220 (8%)
Query: 27 WTINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK + TDTR + + F A+ G++F+ + ++ E +
Sbjct: 4 LNLQEIVKATKGALLKEAYVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LEAF 60
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++V+ NT +L+++A + R + +VG+T
Sbjct: 61 NKGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTRRALMDLAKFYR-EKLGLKVVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 115 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+I ELA +A P+ ++ N+G SH+E L + E++ +AK EI
Sbjct: 174 QIKELAEIASPDFGIITNIGISHIEILKTRENILKAKMEI 213
>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|385789939|ref|YP_005821062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 461
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 13/231 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD-KGFVQVE 107
+C D+R A K F+ I G FDAH+F+S ++ G + + NQ + + K + VE
Sbjct: 33 LCMDSRESA--KGVVFWPIKGARFDAHQFVS-QMEKDGALMSVVNQTAIDPNFKMYAPVE 89
Query: 108 GNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+T +L+ +A Y R F V +TGS GK+TTK M L S+ N + G
Sbjct: 90 -----DTTKALLKLAKGYQR--LFKLKKVAITGSNGKTTTKEMTKAVL-SMKYNTHATKG 141
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV ++L + + + AV+EMG SG EI L+ P+I V+ N+G SHLE LG
Sbjct: 142 NFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLG 201
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
L+ V K I K ++NADD + + + + V FG RRG
Sbjct: 202 DLDGVFNEKINITAGLKENGTLIVNADDERLCKVKATKHYKVVTFGVRRGV 252
>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 442
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 14/241 (5%)
Query: 43 WGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98
G P + T D+R + + F + G D H FI E G G + N+
Sbjct: 1 MGDPDTVITGFSVDSRYV--KQGDMFVCLPGDKTDGHNFID-EAIDNGARGCLVNRDIEL 57
Query: 99 WDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
+ V VN TL +L +A R +F +V VTGS+GK+TTK MIA L
Sbjct: 58 SRRHSVHPPLVIKVNDTLMALQEIARKHR-QKFGVSVVAVTGSIGKTTTKDMIASVLAE- 115
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
++ +++GN N+ +G+ L L+ + + +AVLEMGM+ +GEI L +ARP + V+ +
Sbjct: 116 KYSILKTHGNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRI 175
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRR 275
+SH+E LGSLE++A AKGE+ + G +LN DD V L VP V +++G
Sbjct: 176 AESHIEKLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPGEV--LYYGLTD 233
Query: 276 G 276
G
Sbjct: 234 G 234
>gi|423556775|ref|ZP_17533078.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MC67]
gi|401194090|gb|EJR01082.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MC67]
Length = 458
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 134/259 (51%), Gaps = 22/259 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + V+G L GI DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEKMVDGTGLAEKYEGITIQGASIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRG 276
VP V FG R
Sbjct: 233 RVPEMNLAAETVTFGDARA 251
>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
naphthophila RKU-10]
gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
naphthophila RKU-10]
Length = 426
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 10/216 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F A+ G+ FD H+FI E G VI + N D+ F+ VE +++++L +A
Sbjct: 22 FVAVKGKRFDGHDFID-EALKNGAYAVIAERKTVNSDRIFL-VE-----SSVDALAKLA- 73
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ FSG +VGVTGS GK+TTK ++ L++ +VF++ GN N G+ LS++ +
Sbjct: 74 REKLGNFSGTVVGVTGSSGKTTTKEILYNLLKN-KRSVFKTPGNMNTEYGLPLSILNDYK 132
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I +LEM S G+I L ++A P+I V+LNVG++HLE G+ E + K EI + SK
Sbjct: 133 GEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNAHLEFFGTRERIMETKMEIIKYSK 192
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
V DD + VPR + +FFG G V
Sbjct: 193 ENATAVTFFDDSDLRR-EVPRYRKTLFFGKESGDSV 227
>gi|386817494|ref|ZP_10104712.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thiothrix nivea DSM 5205]
gi|386422070|gb|EIJ35905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thiothrix nivea DSM 5205]
Length = 448
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 29 INEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
++E+A+ GK+L I D+R + F A+ G+ FDAH+F+ P++ GK
Sbjct: 6 LSEVAQMAGGKLLGNDVAVERIERDSRQV--KAGDLFLALKGERFDAHDFV-PQVAGKAS 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
++ V D QV V+ + + A RF LVG+TGS GK+T K
Sbjct: 63 AALLSQAV----DANIPQVL----VDDVRLALGRLAAAWRKRFHKPLVGLTGSNGKTTLK 114
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+ L G + + GN NN +G+ L+L+ + D AV+EMG + GEI L R+A
Sbjct: 115 EMLTAILSQQG-HTLATAGNLNNDIGMPLTLLRLCAQDDFAVIEMGANHFGEIDYLTRIA 173
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
P++ V+ N G +HLE G + VARAKGEIF V ++NADD + R
Sbjct: 174 CPDVAVLNNAGAAHLEGFGDIAGVARAKGEIFNGLGEQGVAIINADDTYASYWLGLNPTR 233
Query: 268 KVF-FGWRRGCDVR 280
KV FG D++
Sbjct: 234 KVLTFGMNAAADIQ 247
>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfuromonas acetoxidans DSM 684]
gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfuromonas acetoxidans DSM 684]
Length = 456
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 138/256 (53%), Gaps = 13/256 (5%)
Query: 28 TINEIAESVNGKILKWGP-PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T +++A V G+ L P I + TD+R L F + G ++D H+++ +
Sbjct: 4 TSDQVATIVGGRRLAAATDPEINGLSTDSRTL--QSGDLFVPLKGPNYDGHDYLR-QAVE 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G + +V +QVE +TL +L +A R S F G ++ VTG+ GK+
Sbjct: 61 HGAAACLSEEVVGGLPVPVIQVE-----DTLQALGELARTIR-SGFDGPVLAVTGTTGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK M+A L + G + ++ GN+NN +G+ L+L + VLE+GMS GEI L
Sbjct: 115 STKEMLASIL-AQGSDGLKTEGNFNNLIGLPLTLARLSDEHRWMVLELGMSQHGEIERLT 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A+P++ ++ NVG HL +G++E VARAKGE+F K G V+N DD L+A L +P
Sbjct: 174 EIAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSGLKAGATAVVNRDDALIAALPIPD 233
Query: 265 GVRKVFFGWRRGCDVR 280
GVR + F VR
Sbjct: 234 GVRVIDFSLTYQTQVR 249
>gi|334345070|ref|YP_004553622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
chlorophenolicum L-1]
gi|334101692|gb|AEG49116.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
chlorophenolicum L-1]
Length = 458
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 129/271 (47%), Gaps = 20/271 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT EIA++ G + P + + D+R + F A+ G+ D H F+ + +
Sbjct: 4 LWTSEEIAQATGG--VASAPFAVSGVAFDSREV--TDGDLFVAMKGEATDGHRFVD-KAF 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G+G G I V + V V + + + A R G +VGVTGSVGK
Sbjct: 59 GQGAAGAI---VSEAIAQPHVLVPDSAAALEALARASRA------RMQGKVVGVTGSVGK 109
Query: 144 STTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
+ TK + AL+ + V +S ++NN VGV LSL + R V EMGM+ GE+
Sbjct: 110 TGTKEALFHALDRICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAA 169
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L R RP + +V + +H+E G+ E +A AK EIF+ + G V+ D P VA L
Sbjct: 170 LTRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYA 229
Query: 263 ---PRGVRKVFFGWRRGCDVRLVAAQVANGG 290
R + FG+ G DV +A GG
Sbjct: 230 KAEKHAARILTFGFDSGADVHAREMVLAAGG 260
>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
Length = 455
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG-- 102
P + TD+R + P F A+ G FD H+F++ L ++ D
Sbjct: 28 PARSLTTDSRQIQPGD--IFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAG 85
Query: 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+QV+ NTL + +A R R S L+G+TGSVGK+TTK +IA L G V
Sbjct: 86 HLLQVD-----NTLWAYQEVARLWRQ-RCSLPLIGITGSVGKTTTKELIAAMLAVRG-PV 138
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVD-IAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
++ N+NN +GV +++ ID AVLEMGM G+G+I ELAR+A+P I V+ NVG +
Sbjct: 139 LKTEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTA 198
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVAN---LTVPR 264
H+ LGS + +A AK E+ + + +LNAD+ L+A L +PR
Sbjct: 199 HIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNHRLIATAQRLNLPR 246
>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
20731]
gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
20731]
Length = 460
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 12/243 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F A+ G+ FD H F++ L V+ + +G
Sbjct: 26 VVTDSRAIVPG--CLFVALKGEKFDGHRFVAQALEDGARAAVV-----SEVPEGVAADRC 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A R + ++ +TGS GK++TK IA L V ++ N+
Sbjct: 79 VVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGER-YRVIKTQANF 137
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +L+ I ++AV+EMGM G G+I + +A P+ V+ NVGD+HLE LGSL
Sbjct: 138 NNEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSL 197
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A+AK EI ++ + LN DDP V+ + V +G DV+ A +++
Sbjct: 198 ENIAKAKSEILEDFTPKNHAFLNGDDPRVSVMETGAAVHT--YGIDSDADVK--AVEISA 253
Query: 289 GGL 291
GL
Sbjct: 254 DGL 256
>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 458
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 18/232 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
IW++ EIA V G++ G + + TDTR L Q F A+TG +D H F+S +L
Sbjct: 3 IWSLAEIASKVGGEL--HGGDTVAEGVSTDTRSL--QHGQLFVALTGPTYDGHAFVSDDL 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G ++ + + V +T +L +A R S VL +TGS G
Sbjct: 59 PAAGV--MVSRLLPTRLPQVLVD-------DTRLALGRLARAWRESLPVTVLA-LTGSNG 108
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+T K M++ A+ + GN NN +GV L+L+ + R AV+EMG + GEI
Sbjct: 109 KTTVKEMLS-AIAREHAPTLATRGNLNNDIGVPLTLLEMARNHRYAVVEMGANHHGEIAY 167
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
L +ARP++ ++ N G +HLE GS+E V+RAKGEI+ V V+NADD
Sbjct: 168 LTSLARPDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGPDGVAVINADD 219
>gi|422874781|ref|ZP_16921266.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens F262]
gi|380304422|gb|EIA16711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens F262]
Length = 453
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|381153307|ref|ZP_09865176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylomicrobium album BG8]
gi|380885279|gb|EIC31156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylomicrobium album BG8]
Length = 451
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 131/256 (51%), Gaps = 19/256 (7%)
Query: 29 INEIAESVNGKIL----KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++E A+ +NG++ +G I DTR L P + AI G+ FD +EF++
Sbjct: 3 LSECAQRLNGELTGDDRAFGSASI---DTRTLQPG--DLYIAIAGERFDGNEFVARAAQ- 56
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G V I Q D ++V +T +L + R SR + +VGVTGS GK+
Sbjct: 57 SGAVAAIVRQGVKA-DIPTIEV-----ADTRLALAELGGVWR-SRANAKVVGVTGSNGKT 109
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
T K MIA L + G V + GN NN +GV L+L+ + AV+EMG + GEI A
Sbjct: 110 TVKEMIAAVLGT-GGEVLHTKGNLNNDIGVPLTLLRLAERHRYAVVEMGANHPGEIAYTA 168
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-LTVP 263
ARP++ ++ N G +H+E GS+E VARAKGE+ K V ++N DD +V
Sbjct: 169 AYARPDVAIITNAGPAHIEGFGSVEGVARAKGELLAALKPDGVAIINRDDAFFGYWQSVA 228
Query: 264 RGVRKVFFGWRRGCDV 279
R + FG G +V
Sbjct: 229 SSRRILSFGLSDGSEV 244
>gi|408418667|ref|YP_006760081.1| bifunctional
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-
alanine ligase MurEF [Desulfobacula toluolica Tol2]
gi|405105880|emb|CCK79377.1| MurEF: fusion protein;
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate ligase and
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase [Desulfobacula toluolica Tol2]
Length = 987
Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats.
Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 24/220 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R +A + F A+ G+ FD H FI L +G G I KGFV
Sbjct: 541 ISTDSRTIA--QTHIFLALKGETFDGHIFIK-RLIDQGIKGFITQ-------KGFVDTLD 590
Query: 109 NGN-----------VNTLNSLVNMACYARNSRF-SGV-LVGVTGSVGKSTTKSMIALALE 155
T ++L + AR R S V L+ +TGS GK+TT+ + +
Sbjct: 591 QNTRKKIFQSSLIIFETRDTLTGLGQLARYQRLRSNVKLIAITGSSGKTTTRKITQEIFK 650
Query: 156 SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215
+ + + GN+NN +G+ L+L+ + A + A++EMGM+ GEI L+R+A P+I VV
Sbjct: 651 T-QYHTHATTGNFNNEIGLPLTLLNLSHAHEWAIVEMGMNHPGEISRLSRIALPDIAVVT 709
Query: 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
N HLE LGS+E+VA AK EIF+ + +L ADDP
Sbjct: 710 NTAGVHLEGLGSVENVATAKAEIFEGIRKNATAILFADDP 749
>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens ATCC 13124]
gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens ATCC 13124]
Length = 453
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium radiotolerans JCM 2831]
gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium radiotolerans JCM 2831]
Length = 482
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 123/264 (46%), Gaps = 15/264 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT E+ ES G L I DTR L P FFAI G D H+F+ P+
Sbjct: 4 LWTREEL-ESATGGCLTGAERAISGASIDTRTLQPG--DLFFAIRGDARDGHDFV-PDAL 59
Query: 84 GKGCVGVIGNQVCNNWDKGF---VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G+G + + + V G L ++V + AR +R S +V VTGS
Sbjct: 60 GRGAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAAR-ARTSAQVVAVTGS 118
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+ TK + L G S ++NN GV L+L + R+ V E+GM+ EI
Sbjct: 119 VGKTGTKEALRHVLSEQG-ETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEI 177
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP----L 256
+ L RP+I ++ + +H+E SL +A AKGEIF + G V +LN D P L
Sbjct: 178 VPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRL 237
Query: 257 VANLTVPRGVRKVFFGWRRGCDVR 280
A+ R R V FG DVR
Sbjct: 238 AAHAQASRAGRVVTFGEHPDADVR 261
>gi|428779121|ref|YP_007170907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dactylococcopsis salina PCC 8305]
gi|428693400|gb|AFZ49550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dactylococcopsis salina PCC 8305]
Length = 450
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 17/216 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-----VCNNWDKGF 103
I TDTR+L P + F A+ G+ FD H F+ + + +I NQ + + + +
Sbjct: 33 IETDTRVLKPG--EVFVALVGEKFDGHHFLENAVRSRAS-ALILNQDFSGTIPDEIPQFY 89
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
VQ NTL + +A + R V +G+TGSVGK+TTK +IA L G V +
Sbjct: 90 VQ-------NTLTAYQKIAHWWRQQHQIPV-IGITGSVGKTTTKELIAGVLSRYG-KVLK 140
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV +L+ ++ D AV+EM M KGEI +L + +P I ++ NVG +H+
Sbjct: 141 TEGNYNNEIGVPKTLLRLNAEHDYAVVEMAMRAKGEIAQLTDITQPTIGLITNVGTAHIG 200
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
LGS +A+AK E+ + +LN D+ + N
Sbjct: 201 RLGSRSAIAQAKCELLAQMPKTATAILNHDNQRLIN 236
>gi|357406922|ref|YP_004918846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylomicrobium alcaliphilum 20Z]
gi|351719587|emb|CCE25263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylomicrobium alcaliphilum 20Z]
Length = 453
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 19/267 (7%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++EIA+ V G + +G ++ DTR + + AI G+ FD ++F+
Sbjct: 5 LSEIADYVGGVL--FGEDKVVTGVSIDTRTI--ETGNLYCAIKGERFDGNDFVGDAEQAG 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ +V V +T +L +A + RN R + +VG+TGS GK+T
Sbjct: 61 AVAAILSRKVEVTMPIVVVS-------DTRLALAELAGFWRN-RQAAQVVGITGSNGKTT 112
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K M A L G V + GN NN +GV L+L+ + AV+EMG + GEI +R
Sbjct: 113 VKEMTAAILGIQG-PVLYTQGNLNNDIGVPLTLMKMGAEHRYAVIEMGANHAGEIAYTSR 171
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
ARP++ ++ NVG +HLE GS++ +ARAKGEI VLN DD G
Sbjct: 172 YARPQVTIISNVGPAHLEGFGSVDGIARAKGEIIGSLGSDGTAVLNHDDTYFDYWQEQAG 231
Query: 266 VRKVF-FGWRRGCDVRL--VAAQVANG 289
RKV FG + G D+R + ++ NG
Sbjct: 232 TRKVLSFGLKPGADIRAENIVTRIENG 258
>gi|406902941|gb|EKD45169.1| hypothetical protein ACD_70C00037G0002 [uncultured bacterium]
Length = 443
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R + + FFAI G+ FD H FI+ + V ++ V V+
Sbjct: 24 ISIDSR--SVQNDDCFFAIKGEFFDGHNFITDVIKKNVAVLIVDRDVQTTVSHIKVK--- 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT +L+N+A + R + S + +TGS GK+TT++++ L+ G NV S ++
Sbjct: 79 ----NTREALINLARFYRENT-SIPVAAITGSCGKTTTRALLENILKQAG-NVLASQKSF 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+L+ ++ A D VLE+G + GEI +LA +A+P + V V H+E G++
Sbjct: 133 NNDIGLPLTLLKLNPAHDYIVLEIGTNHPGEIAQLASVAKPTVATVTMVAPVHIEHFGTV 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDV 279
E +AR KG IF+ + V+N DDP A+L + R + FG + DV
Sbjct: 193 EAIAREKGAIFEGLAADGIAVINVDDPH-ADLWKKMSNAHRIITFGREKNADV 244
>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens B str. ATCC 3626]
gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens B str. ATCC 3626]
Length = 453
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
sp. RS9917]
gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
sp. RS9917]
Length = 460
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 7/213 (3%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P G +CTD+R L +F + G+ FD H F+ V+ + G +
Sbjct: 26 PLGPVCTDSRQLV--AGAFFVPLVGERFDGHRFLVEAAARPAQAAVVATAWSDPVPPGLL 83
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N +TL + M A + +V VTGS GK+TT+ +I AL LGV V S
Sbjct: 84 HWRVN---DTLEA-YQMLARAHRRQLPCPVVAVTGSAGKTTTRELIRAALAPLGV-VQAS 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN VGV L+++G+ AV+EMGM G GEI L+R A P+I V+ N+G +H+
Sbjct: 139 SGNNNNDVGVPLTVLGVGPEHGAAVIEMGMRGPGEIARLSRCAEPQIAVITNIGTAHIGR 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK EI + V+ A DPL+
Sbjct: 199 LGSREAIAAAKCEITASLAADGLVVIPAGDPLL 231
>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Nitrosomonas eutropha C91]
gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrosomonas eutropha C91]
Length = 457
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 122/241 (50%), Gaps = 20/241 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDKGFV 104
+ TD+R L P F A++G+ FD FIS + KG V + + V D G++
Sbjct: 27 VSTDSRTLRPGD--LFIALSGEQFDGQHFISTAIE-KGAVAAMVSTDTVIVPTKSDFGWI 83
Query: 105 QVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALAL--ESLGVN 160
+V ++ + A N R F+ LV VTGS GK+T K MIA E N
Sbjct: 84 KVN--------DTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGN 135
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
V + GN NN +GV L+ ++ AV+EMGM+ GEI L+++A P I V+ N G +
Sbjct: 136 VLATTGNLNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAVITNAGTA 195
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
H+E LG+ E +ARAKGEIF + ++NADD G R++ FG +
Sbjct: 196 HIEHLGTTEAIARAKGEIFTGLGAQGIAIINADDAYAQLWRQLAGSRQILDFGITNPAAI 255
Query: 280 R 280
R
Sbjct: 256 R 256
>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus elongatus PCC 6301]
gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
6-diaminopimelate--D-alanyl-D-alanine ligase
[Synechococcus elongatus PCC 6301]
Length = 455
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 17/228 (7%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG-- 102
P + TD+R + P F A+ G FD H+F++ L ++ D
Sbjct: 28 PARSLTTDSRQIQPGD--IFLALRGDRFDGHDFVAQALADGAIAAIVDRDYQPPSDLAAG 85
Query: 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+QV+ NTL + +A R R S L+G+TGSVGK+TTK +IA L G V
Sbjct: 86 HLLQVD-----NTLWAYQEVARLWRQ-RCSLPLIGITGSVGKTTTKELIAAMLAVRG-PV 138
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVD-IAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
+ N+NN +GV +++ ID AVLEMGM G+G+I ELAR+A+P I V+ NVG +
Sbjct: 139 LKPEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAELARIAQPNIAVITNVGTA 198
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVAN---LTVPR 264
H+ LGS + +A AK E+ + + +LNAD+ L+A L +PR
Sbjct: 199 HIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNHRLIATAQRLNLPR 246
>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
coahuilensis m4-4]
Length = 456
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 129/247 (52%), Gaps = 16/247 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV-E 107
+ DTR L F G++ D H F+ ++ KG W+K E
Sbjct: 30 VIIDTRKL--TAGNLFVPFKGENVDGHTFVR-DVLEKGAGAAF-------WEKSAGPAPE 79
Query: 108 GNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
G + +SLV + ++ R + +VGVTGS GK+TTK ++ AL S V ++
Sbjct: 80 GLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDIL-FALLSTKYRVHKTE 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ + ++AVLEMGMSG GEI EL ++A P+ ++ N+G+SHL+ L
Sbjct: 139 GNYNNHIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALPDAAIITNIGESHLQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +++AK EI + K + V N D+PL+ G K FG R + +
Sbjct: 199 GSREGISKAKFEIVEGLKSEGLFVYNGDEPLLQERVKGYGGSKETFG--RHSSNTMYPTK 256
Query: 286 VANGGLG 292
+A G G
Sbjct: 257 LAPSGFG 263
>gi|395768557|ref|ZP_10449072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
D-alanyl-alanyl ligase [Streptomyces acidiscabies
84-104]
Length = 469
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 25/263 (9%)
Query: 28 TINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIAE V G+I P G + D+R P F A G+ D H++ + ++
Sbjct: 5 SLAEIAEVVGGQIHAIPDPSARVTGPVVRDSREAGPGS--LFVAFVGERVDGHDY-ARQV 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGS 140
G V V+ ++ D + V+ +V T + AR+ + LV +TGS
Sbjct: 62 VDAGAVAVLASRPV---DAPAIVVD---DVQT-----ALGALARHVVRQLGATLVALTGS 110
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK +IA L S VF + G+ NN +G+ L+ + + VLEMG G G I
Sbjct: 111 AGKTSTKDLIAQVLSSHAPTVF-TPGSLNNEIGLPLTALSASQDTRFLVLEMGARGIGHI 169
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE---SKLGDVCVLNADDPLV 257
LA + P+I +VLNVG +H+ G E +A+AKGE+ + + G +LNADDPLV
Sbjct: 170 KYLAELTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVESLPPAAEGGAAILNADDPLV 229
Query: 258 ANLTVPRGVRKVFFGWRRGCDVR 280
+ + V FG DVR
Sbjct: 230 RAMASRTTAKVVLFGESDEADVR 252
>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 345
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 15/236 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + + F + G+ FD H + + + G + + G V V
Sbjct: 11 VFTDSRQI--KQGSLFVPLVGERFDGHAY-AESVLKDGAGATLWQRDRGEAPAGAVIVVD 67
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ TL +L +A A + +VG+TGS GK+TTK M+ L S V ++ GN+
Sbjct: 68 D----TLAALQTLA-EAYLAEVGCRVVGITGSNGKTTTKDMV-YTLLSTTYKVHKTGGNF 121
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ + +IAVLEMGMSG+ EI L+++ARP++ V+ N+G++HL LGS
Sbjct: 122 NNHIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQLGSR 181
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV------ANLTVPRGVRKVFFGWRRGCD 278
++ARAK EI K G + + + D+PL+ A P G+ FG D
Sbjct: 182 HEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGTFTFGLDHSND 237
>gi|374598623|ref|ZP_09671625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myroides odoratus DSM 2801]
gi|423323136|ref|ZP_17300978.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Myroides
odoratimimus CIP 103059]
gi|373910093|gb|EHQ41942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myroides odoratus DSM 2801]
gi|404609868|gb|EKB09230.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Myroides
odoratimimus CIP 103059]
Length = 434
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 18/212 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN--QVCNNWDKGFVQV 106
I DTR + PN FFA+ G +FDA+EF + E KG VI + ++ + DK F+
Sbjct: 16 IAIDTRNITPNS--LFFALKGDNFDANEF-AQEALDKGARYVIMDNPKLVTDRDKMFLVP 72
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
N L +L +A Y R + ++ +TGS GK+TTK +I L S NV + G
Sbjct: 73 ------NALQALQQLANYHR-QQLGLPIIALTGSNGKTTTKELIKAVL-SRKYNVKATQG 124
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ D DI ++EMG + EI L +A+P+ + N G +HLE G
Sbjct: 125 NYNNHIGVPLTLLQFDDETDIGIVEMGANHLNEIALLCTIAQPDYGYITNFGKAHLEGFG 184
Query: 227 SLEDVARAKGEIFQESKLGD---VCVLNADDP 255
E V + K E++ L D + +NADDP
Sbjct: 185 GFEGVIKGKSELY--DYLEDNHKMAFVNADDP 214
>gi|443316698|ref|ZP_21046133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 6406]
gi|442783725|gb|ELR93630.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 6406]
Length = 454
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 136/262 (51%), Gaps = 30/262 (11%)
Query: 28 TINEIAESVNGKILKWGPPGI----------ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
++ +IA ++ GK PP + + TDTR + P FFA+ G FD H+F
Sbjct: 6 SLRDIAIALQGKF----PPSVDIRQDIAVTGVSTDTRQIQPGD--LFFALQGDSFDGHQF 59
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ L V+ V V +TL + +A + R R + +V +
Sbjct: 60 VAAALAAGAVAAVVQRPVVGTESCLLVP-------DTLAAYQRLAQWWRQ-RLAIPIVAI 111
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +IA AL + G NV ++ N+NN +GV +L+ + D V+EMGM G
Sbjct: 112 TGSVGKTTTKELIAAALSTQG-NVLKTRANYNNEIGVPKTLLELSPDHDFGVVEMGMRGP 170
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L ++A+P + V+ NVG +H+ LGS + +A AK E+ + + VLNA++ +
Sbjct: 171 GEIALLTQIAQPTVAVITNVGTAHIGRLGSEQAIADAKCELLAQLAPEGIAVLNAENQRL 230
Query: 258 ANLTVPRGV---RKVFFGWRRG 276
+ GV R++ FG +G
Sbjct: 231 --MVTAAGVWSGRQISFGLTQG 250
>gi|339449341|ref|ZP_08652897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Lactobacillus fructivorans KCTC 3543]
Length = 458
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 12/253 (4%)
Query: 31 EIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA++VNG + + T D+R L PN F +TG+H D H+FI+ +
Sbjct: 7 EIAKAVNGDLNSKKYENVDVTGVSFDSRKLKPN--DLFVPLTGKH-DGHDFIASAIENGA 63
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
+ KGF + + +TL L +++ + N + + +V +TGS GK+TT
Sbjct: 64 SATFWNKSRSEDAPKGFPVILVD---DTLKVLQDLSSHYLN-KINPKVVAITGSNGKTTT 119
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K MIA L + NV +++ N+NN +GV ++++ ++ + V+EMGM G++ L+++
Sbjct: 120 KDMIASILAT-QFNVCKTHANFNNEIGVPITILSMESNTEYLVVEMGMDRPGQLDFLSKL 178
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
+P+I V+ +G++H+E G+ + +A AK EI + V V + D+PL+ V
Sbjct: 179 VKPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLRPDGVFVYDGDEPLLNERAKALDV 238
Query: 267 RKVFFGWRRGCDV 279
K+ FG + D+
Sbjct: 239 EKLTFGRKDTNDI 251
>gi|406989178|gb|EKE08984.1| hypothetical protein ACD_16C00227G0004 [uncultured bacterium]
Length = 463
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 16/264 (6%)
Query: 24 SPIWTINEIAESVNGKILK-WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+P+WT E+ + G+ W G+ DTR L K F A+ G+ D F+ E
Sbjct: 6 TPLWTSKEVDQITGGESTSPWVCFGL-SIDTRTL--EKGDLFIALQGEKGDGTPFLQ-EA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ KG G + + VE +TL SL +A AR S + +TGSVG
Sbjct: 62 FDKGAAGAMVPCAAKT-SLPLLVVE-----DTLASLGKLAI-ARRQMCSATRIAITGSVG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK M+ AL+ G S ++NN GV L+L + V E+GM+ GEIL
Sbjct: 115 KTSTKDMLKWALKDQG-PTHGSIASYNNHWGVPLTLARMPETTKFGVFEVGMNHAGEILP 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVAN 259
L++M +P+I ++ V ++H E + ED+ARAK E+F + G +LN D+ L+++
Sbjct: 174 LSQMIKPQIVIITTVVEAHTEFFKTEEDIARAKAEVFDGMEAGGSVLLNGDNIYFSLLSH 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVA 283
L +G++ FG + D R V+
Sbjct: 234 LASEKGLKVSTFGKDKTADFRFVS 257
>gi|427712428|ref|YP_007061052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 6312]
gi|427376557|gb|AFY60509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 6312]
Length = 454
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 11/209 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ FD H FI + ++ + + VQ
Sbjct: 38 VSTDTRTLQPGD--IFLALRGETFDGHGFIEVAKQQGASLAIVDQAIGVPIPQIIVQ--- 92
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R +F ++ +TGSVGK+TTK ++A L G V ++ N+
Sbjct: 93 ----DTLAAYQILGQWWRQ-QFPIPVIAITGSVGKTTTKELVAAVLGCYG-KVLKTEANY 146
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EMGM G GEI L+RMA+ + V+ NVG +H+ LGS
Sbjct: 147 NNEIGVPKTLLQLTADHDFAVIEMGMRGPGEIALLSRMAQATVGVITNVGTAHIGRLGSR 206
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ E +LN + PL+
Sbjct: 207 EAIAQAKCELLAELPSTSTAILNGEQPLL 235
>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens CPE str. F4969]
gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens CPE str. F4969]
Length = 456
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 127/220 (57%), Gaps = 18/220 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++ E +
Sbjct: 7 LNLQEIVKATKGVLLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LEAF 63
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++V+ NT +L+++A + R + +VG+T
Sbjct: 64 NKGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 118 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 176
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 177 QIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 216
>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanobacillus iheyensis HTE831]
gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
[Oceanobacillus iheyensis HTE831]
Length = 455
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 12/242 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ---VCNNWDKGFVQ 105
+ DTR P+ N + I G+ FD H FI + G + + ++ + + WD F
Sbjct: 28 VTRDTR--EPSSNSLYIPIVGERFDGHNFIFDAI-KNGAIATLWDKSIPLPSEWDNSFPV 84
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ + L N Y R+ + +VGVTGS GK+TTK +I +++ +
Sbjct: 85 FFVEDTILAMQQLAN--SYLRS--VNPTVVGVTGSNGKTTTKDLITSVVKT-SYKTTATQ 139
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+++ + ++ VLEMGMS GEI L+++A P+ V+ N+G+SH+E+L
Sbjct: 140 GNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIAEPDYTVITNIGESHIENL 199
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
GS + +A+AK EI + K ++ D+PL+A + ++ G+ + D+ +
Sbjct: 200 GSRKGIAKAKLEIIEGIKSNGNLFIDDDEPLLAKENIDMDDSQIIGIGFTKESDINISNV 259
Query: 285 QV 286
+V
Sbjct: 260 KV 261
>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ACS-171-V-Col3]
gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ACS-171-V-Col3]
Length = 454
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 13/259 (5%)
Query: 26 IWTINEIAESV-NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ TI E+ ++ N K GI TDTR + K+ F A+ G +FD +I
Sbjct: 6 LKTITELTNTIINEKYHDIMVKGI-STDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ N D ++V+ NT ++++A NS V + +TGS GK+
Sbjct: 63 GASCCVVNRDYRNINDYPVIEVD-----NTKEFMMDLARGYINSLKCKV-IAITGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +++ L+ V ++ N+NN +G++ ++ ID ++AVLEMG GEI +L
Sbjct: 117 TTKDIMSSLLKE-KYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLT 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P+I ++ N+GDSHL +L + E++ARAK EI + K + +LN DD ++ +
Sbjct: 176 NIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDSILREVKQEY 235
Query: 265 GV--RKVFFGWRRGCDVRL 281
+ + + FG + D R+
Sbjct: 236 KLPEKTITFGIKPDSDYRM 254
>gi|386826942|ref|ZP_10114049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Beggiatoa alba B18LD]
gi|386427826|gb|EIJ41654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Beggiatoa alba B18LD]
Length = 449
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 12/251 (4%)
Query: 31 EIAESVNGKILKWGPPGIIC-TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG 89
EIA + G+++ C TDTR P + A+ GQ FD H+F+ P++ +G V
Sbjct: 8 EIARVLQGQLIGANVTITGCYTDTR--NPLTGGLYLALKGQQFDGHDFL-PQIQSQGGVA 64
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
+ QV D ++V +T + +A Y R +F+ ++ +TGS GK+T K M
Sbjct: 65 ALVEQVNTGIDLPQIRV-----THTWQAAGQLARYWR-EQFNQPVIAITGSNGKTTVKEM 118
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
L G NV + GN NN +G+ L+L ++ D VLEMG S +G+I L +A+P
Sbjct: 119 TRQILARRG-NVLATQGNLNNEIGLPLTLFTLNDKHDFIVLEMGASKRGDIAYLCELAKP 177
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV 269
I V +HL+ S+E VAR KGEIF+ + ++N DD G RK+
Sbjct: 178 TIAAVTLCAPAHLDGFKSVEGVARTKGEIFEHLPNNGIAIINHDDFYSGLWQELAGQRKI 237
Query: 270 F-FGWRRGCDV 279
FG ++ +
Sbjct: 238 ITFGLQKSATI 248
>gi|363899129|ref|ZP_09325640.1| hypothetical protein HMPREF9625_00300 [Oribacterium sp. ACB1]
gi|395209499|ref|ZP_10398593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. ACB8]
gi|361959459|gb|EHL12746.1| hypothetical protein HMPREF9625_00300 [Oribacterium sp. ACB1]
gi|394705130|gb|EJF12659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. ACB8]
Length = 429
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 12/216 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F + G+ DAH FI P G V+ + K + V+ +TL +L
Sbjct: 27 FVPLKGEKVDAHRFI-PMAIEHGAKHVLTAENSAKLQKKYPDVQFYSVEDTLEALQAFGA 85
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ R ++ G L+GVTGSVGK+TT+ MIA AL S VFQ+ GN N++VGV ++L + +
Sbjct: 86 FCRR-KYKGTLIGVTGSVGKTTTREMIAAALSS-EKKVFQTKGNANSQVGVPITLFDMAK 143
Query: 184 A-VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
A +I+V+EMG+S GE+ LARM ++ V N+GD+HLE++ + E+ K I
Sbjct: 144 AKQEISVIEMGVSIPGEMERLARMCSVDMAVFTNIGDAHLENMQTKENTCFEKMHIL--- 200
Query: 243 KLGD----VCVLNADDPLVANLTVPRGVRKVFFGWR 274
+GD L DP+++ LT R F G R
Sbjct: 201 -MGDPGRVELYLPKKDPILSQLTEERIQDMGFLGKR 235
>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E3 str. Alaska E43]
gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E3 str. Alaska E43]
Length = 453
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 139/259 (53%), Gaps = 14/259 (5%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+NE+ ++++G++L G I TDTR + +KN F A+ G +F+ + ++ +
Sbjct: 3 LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKI--DKNSLFIALKGNNFNGNNYVVEAIK 60
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
V +I ++ DKG V + + +L +A Y R + +VG+TGS
Sbjct: 61 AGATVAIIDEVNFKLEELNDKGTVIKVNDAKI----ALGALAKYYR-EKLGIKVVGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++A A S +VF++ GN+NN +G+ L + +D + DIAVLEMG + EI
Sbjct: 116 TGKTSTKDLVA-AFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +ARP++ ++ NVG SH+E L + E++ + K I K + V+N ++ ++ +
Sbjct: 175 HRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKV 234
Query: 261 TVPRGVRKVFFGWRRGCDV 279
+ G+ + D+
Sbjct: 235 NEDHEFKIEKIGYDKKYDL 253
>gi|392383192|ref|YP_005032389.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Azospirillum brasilense Sp245]
gi|356878157|emb|CCC99025.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Azospirillum brasilense Sp245]
Length = 498
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 15/282 (5%)
Query: 26 IWTINEIAESVNGKILK-WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT + A + +G+ + W G+ D+R +AP F AI G +FD H+F++ L
Sbjct: 8 LWTAEDAAAATSGQATRSWAATGV-SIDSRKVAPG--DLFVAIKGPNFDGHDFVAKALEA 64
Query: 85 KGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ D + VE + TL +L ++ AR R +VGVTGSVGK
Sbjct: 65 GAAAALVSTVPPGVPGDASLLAVEQD----TLAALGDLGHVAR-LRTQAKVVGVTGSVGK 119
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK + L + G F + G+ NN GV LSL + + V E+GM+ GE+ L
Sbjct: 120 TSTKEALRHVLSAQG-RTFATEGSLNNHWGVPLSLARMPEDSEFGVFELGMNHAGELGPL 178
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+R P++ V+ V +HLE S+E +A AK EIF+ V VLN D+P A L
Sbjct: 179 SRQVMPDVAVITTVEAAHLEFFDSVEAIADAKAEIFEGMNPNGVAVLNRDNPHFARLLAA 238
Query: 264 ---RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301
+G+ +++ FG D RLV + V ++ ER
Sbjct: 239 ARTQGLSRIWSFGSHADADARLVDCSLHATCSAVTAIVRGER 280
>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sphingomonas wittichii RW1]
gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sphingomonas wittichii RW1]
Length = 472
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+P+WT +IA +V+G++ + D+R + P F A+ G+ D H F+
Sbjct: 2 TAPLWTAFDIAAAVDGEVYGDFRTDGVTFDSREVGPG--DLFIALKGETTDGHRFLDKAF 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ V + D V+V +T+ +L + AR+ R G ++GVTGSVG
Sbjct: 60 AAGAAGAI----VSDACDGPHVRV-----ADTMAALDALGAAARD-RMHGRVIGVTGSVG 109
Query: 143 KSTTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
K+ TK + L+ +L V +S ++NN GV LSL + I V EMGM+ GE+
Sbjct: 110 KTGTKEALYACLDRALPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELA 169
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L R+ RP + +V + +H S D+A AKGEIFQ + G V ++ D P L
Sbjct: 170 ALTRLVRPHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLI 229
Query: 262 V---PRGVRKVFFGWRRGCDVR 280
P R + FG R DV
Sbjct: 230 AAAKPHAARILTFGMDRAADVH 251
>gi|416847140|ref|ZP_11906949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O46]
gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O46]
Length = 452
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|385782322|ref|YP_005758493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 11819-97]
gi|418572729|ref|ZP_13136935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21333]
gi|364523311|gb|AEW66061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus 11819-97]
gi|371984073|gb|EHP01200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21333]
Length = 452
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHHFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
Length = 445
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 8/177 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
FFA+ G+ D H+F++ + +G VG + + + K ++V +T +L +A
Sbjct: 38 FFALKGERHDGHDFVT-DAVDRGAVGCVVERDVEHAGKFSIKVS-----STQEALRELAL 91
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
Y R F G +VGV GSVGK+TTK +I L + + F+S GN N+++G+ L + +
Sbjct: 92 Y-RRGIFRGEVVGVAGSVGKTTTKELIHHLLSNAAAS-FRSEGNLNSQIGLPLVVCNMPL 149
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
VD AVLE+G S G++ L +A+P++RV+ +G+ HLES G+LEDV + GEIF+
Sbjct: 150 EVDYAVLELGASAVGDVERLVEVAQPKVRVITALGEEHLESFGTLEDVVKGNGEIFR 206
>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. WH 7803]
gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. WH 7803]
Length = 471
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 7/213 (3%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G +CTD+R L P +F + G+ FD H F+S + + + + G +
Sbjct: 30 GPVCTDSRTLEPGS--FFIPLRGERFDGHRFLSSAVERGAQAAFVASDCAHAVPDGLLHW 87
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL + +A R + + +V VTGS GK+TT+ +I AL LG +V S
Sbjct: 88 K---VADTLEAYQQLATLHRR-QLNAAVVAVTGSAGKTTTRELIRSALAPLG-DVQASDS 142
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+G R+ V+EMGM G GEI L+ A PEI V+ N+G +H+ LG
Sbjct: 143 NNNNDIGVPLTLLGAHRSHAAVVVEMGMRGAGEIERLSCCAEPEIAVITNIGTAHIGRLG 202
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
S +A AK EI V V+ A D L+ +
Sbjct: 203 SRAAIASAKCEITAALSPRGVVVIPAGDALLED 235
>gi|410944694|ref|ZP_11376435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconobacter frateurii
NBRC 101659]
Length = 458
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL- 82
+ +WT E+ ++ G + I DTR L P F A+ G+ D H I+ L
Sbjct: 2 TALWTSQELRDATQGTLAADVSVTGISIDTRTLKPG--DLFIALKGETSDGHAHITQALE 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G CV V Q + D + V +T+ L + YAR+ RF G ++ VTGSVG
Sbjct: 60 AGAACVMVHDTQ--GSTDPRLLIV-----ADTMRGLEALGRYARD-RFDGKIIAVTGSVG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M+ AL +LG + ++NN GV L+L + R V E+GM+ GEI
Sbjct: 112 KTTTKDMLRTALSALG-PTHAAVASYNNHWGVPLTLARLPRDARFCVSEVGMNHVGEIAP 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
LA RP++ ++ +G +HL +GS+E++AR K +F
Sbjct: 171 LAAQVRPDVAIITTIGTAHLGHMGSVEEIAREKATLF 207
>gi|417897461|ref|ZP_12541392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21235]
gi|341839559|gb|EGS81139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21235]
Length = 452
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKETQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|410667609|ref|YP_006919980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Thermacetogenium phaeum DSM 12270]
gi|409105356|gb|AFV11481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Thermacetogenium phaeum DSM 12270]
Length = 462
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 137/257 (53%), Gaps = 12/257 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI ++V G+++ G I D+R + + FFA G D H+F+ L
Sbjct: 5 TLEEIVKAVQGRLVHGGREEKITGVSIDSRKV--RRGDLFFAFPGARNDGHDFVGQALKA 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ V + +K + V + L +L +A Y R F+ +VG+TGS GK+
Sbjct: 63 GAAAAVVTRPVKDAKEKPLILVS-----DPLEALQGLARYYRRL-FNIPVVGITGSTGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +IA L V ++ GN+NN +G+ L+L+ ++R+ +AVLEM M G+GEI L
Sbjct: 117 TTKDIIAGVLGKRW-RVLKNEGNYNNEIGLPLTLLRMERSHQVAVLEMAMRGRGEIAALC 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ +P++ V+ N+G +HLE LGS E +A AKGE+ + VLNA+DP L
Sbjct: 176 EIGQPQVGVITNIGKTHLELLGSQEAIAEAKGELLEALPPDGCAVLNAEDPWQLRLASRV 235
Query: 265 GVRKVFFGWRRGCDVRL 281
+F+G C VR+
Sbjct: 236 RGEVIFYGMEENCAVRV 252
>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
magna ATCC 29328]
gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
magna ATCC 29328]
Length = 454
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 11/235 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + K+ F A+ G +FD +I V+ N D ++V+
Sbjct: 29 ISTDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRDYRNINDYPVIEVD- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT ++++A S ++ +TGS GK+TTK +++ L+ V ++ N+
Sbjct: 86 ----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKTTTKDIMSSLLKE-KYKVVKTQKNY 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G++ ++ ID ++AVLEMG GEI +L +A P+I ++ N+GDSHL +L +
Sbjct: 140 NNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTK 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV--RKVFFGWRRGCDVRL 281
E++ARAK EI + K + +LN DDP++ + + + + G + D R+
Sbjct: 200 ENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLPEKTITLGIKPDSDYRM 254
>gi|404481890|ref|ZP_11017119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridiales bacterium OBRC5-5]
gi|404344860|gb|EJZ71215.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridiales bacterium OBRC5-5]
Length = 459
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+A + G+I+ + I D+R +K+ F + G+ DAH+F+ +Y
Sbjct: 5 TIKELAFATGGEIISGNENAVFSNIVIDSR--QADKDSLFVPLVGEKNDAHKFLES-VYD 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
GC I ++ F V N +T +L + Y R S+ + LVGVTGSVGK+
Sbjct: 62 MGCRVAISSKKDIFLKDDFNIVLVN---DTTEALQKLGKYIR-SKLTLPLVGVTGSVGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT+ M+ALAL L VF++ N+N++VGV ++L I+ +I V+E+GMS GE+ +A
Sbjct: 118 TTREMVALALSDL--KVFKTPNNFNSQVGVPITLSRINDE-EIGVIELGMSQFGEMERIA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ + +V N+G +H+E+L + E++ K I K G V LNAD+ ++ + +
Sbjct: 175 KIVNCDCALVTNIGTAHIENLHTRENIRAEKFHIMDGMKNGSVVFLNADNDMLFDPPKEK 234
Query: 265 GVRKVFFGWR 274
G+ +F +
Sbjct: 235 GIEYKYFSAK 244
>gi|310659203|ref|YP_003936924.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[[Clostridium] sticklandii]
gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[[Clostridium] sticklandii]
Length = 457
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 129/244 (52%), Gaps = 17/244 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + +N + AI G++FD ++FI + K V ++ N+ +N K + VE
Sbjct: 29 VVTDSRKIQ--ENDCYIAIKGENFDGNDFIEQAINNKASV-ILSNRQSSN--KEVITVE- 82
Query: 109 NGNVNTLNSLVNMACYARNS--RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
++++ + A+N +F + VTGS GK+TTK M+ + ++ G
Sbjct: 83 -------DTVIALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYVFNE-HFSTHRTDG 134
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+ + ID+ + A+ EMGMS GEI LA++ RP I ++ N+G H+E L
Sbjct: 135 NYNNEIGLPLTALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNIAIITNIGSCHIEILK 194
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQ 285
S E++ +AK EI D ++N DD + +L+ + +G+ C +R +
Sbjct: 195 SQENIFKAKMEISNYLNNDDYLIVNGDDKYLTSLSENEYKFNLIKYGFGEECQLRASDYK 254
Query: 286 VANG 289
+G
Sbjct: 255 AVDG 258
>gi|385653189|ref|ZP_10047742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-alanyl ligase [Leucobacter
chromiiresistens JG 31]
Length = 469
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 129/264 (48%), Gaps = 19/264 (7%)
Query: 27 WTINEIAESVNGKIL----KWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFI 78
T+ EIA +VNG+++ GP ++ TD+R + P Q FFA G+ D H F
Sbjct: 4 LTLAEIATAVNGRLIVGDDGSGPDTVVDGESQTDSREVGPG--QIFFARRGEETDGHRFA 61
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG--VLVG 136
+ + V+ V D+ Q+ + L +L R R +G +VG
Sbjct: 62 DRAVDAGAALLVVERDV----DRRAPQIVVADSTAALGALATEVV--RRVRDAGGLTIVG 115
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK+TTK+++A E G V S ++NN VG L+++ + V EMG S
Sbjct: 116 ITGSNGKTTTKNLVAAMAERTGPTV-ASAKSFNNEVGGPLTMLRVAPDTRTLVAEMGASA 174
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
+GEI L MA P I VVL VG +H G +E R K E+ ++ V VLN DDP
Sbjct: 175 EGEIARLTAMAPPHIGVVLTVGLAHAGEFGGIETTFRTKSEMVRDLPEDAVAVLNRDDPR 234
Query: 257 VANLTVPRGVRKVFFGWRRGCDVR 280
V+ + R ++FG G DVR
Sbjct: 235 VSQMADLTRARVLWFGLSDGADVR 258
>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii RSA 331]
gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii RSA 331]
Length = 446
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 18/235 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVE 107
+ TDTR + P F A+ G +FDA++FI+ + +G VG + N+V FV
Sbjct: 25 VSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQGAVGAVVNRVVKTTLPLIFVS-- 79
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A Y R +V VTGS GK+TT++++A G NV S +
Sbjct: 80 -----DTLEALGRLARYQREQIPIPAIV-VTGSCGKTTTRALLASVFRQCG-NVLASEKS 132
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV L+L+ + AVLE+G + GEI L +A+P + ++ N G HLE GS
Sbjct: 133 FNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGS 192
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGCDV 279
LE VA+AKGEIF+ V+N DD L R R + FG + DV
Sbjct: 193 LEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR--RIISFGINQPADV 245
>gi|418649121|ref|ZP_13211151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-91]
gi|375030380|gb|EHS23697.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-91]
Length = 415
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|418313943|ref|ZP_12925425.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21334]
gi|365234557|gb|EHM75487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21334]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|403715982|ref|ZP_10941620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Kineosphaera limosa NBRC 100340]
gi|403210285|dbj|GAB96303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Kineosphaera limosa NBRC 100340]
Length = 509
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 113/237 (47%), Gaps = 14/237 (5%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + TD R P + A G+H D H ++ P+ G + + V
Sbjct: 38 GPVVTDAREAGPGS--LYVARIGEHADGHGYV-PQAVQTGAAAALVTRPVEALPHVLVP- 93
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGV---LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + +A + +++ V +VG+TGS GK+TTK ++A LE V
Sbjct: 94 ------DVQEAFAAIATHVIDTQVQRVGLQVVGITGSSGKTTTKDLLAAVLERHAPTV-A 146
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ G+ N+ VGV L++ I VLEMG G G I L M P I VVLNVG +H+
Sbjct: 147 NVGSLNSEVGVPLTVCRITADTRFLVLEMGARGIGHIRYLTDMTHPRIGVVLNVGSAHVG 206
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
GS E +A+AK E+ Q G + VLNADDPLV + V R VF G DVR
Sbjct: 207 EFGSREVIAQAKAELVQALPPGGLAVLNADDPLVRAMAVAPDARTVFVGSAGAADVR 263
>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii RSA 493]
gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii RSA 493]
Length = 446
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 18/235 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVE 107
+ TDTR + P F A+ G +FDA++FI+ + +G VG + N+V FV
Sbjct: 25 VSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQGAVGAVVNRVVKTTLPLIFVS-- 79
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A Y R +V VTGS GK+TT++++A G NV S +
Sbjct: 80 -----DTLEALGRLARYQREQIPIPAIV-VTGSCGKTTTRALLASVFRQCG-NVLASEKS 132
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV L+L+ + AVLE+G + GEI L +A+P + ++ N G HLE GS
Sbjct: 133 FNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGS 192
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGCDV 279
LE VA+AKGEIF+ V+N DD L R R + FG + DV
Sbjct: 193 LEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR--RIISFGINQPADV 245
>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MW2]
gi|49486875|ref|YP_044096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH70]
gi|418989149|ref|ZP_13536817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|448742180|ref|ZP_21724132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/314250]
gi|448743157|ref|ZP_21725069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/Y21]
gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MW2]
gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MSSA476]
gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH70]
gi|377715677|gb|EHT39864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|445547051|gb|ELY15325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/314250]
gi|445563510|gb|ELY19669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/Y21]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus COL]
gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus str. Newman]
gi|379015209|ref|YP_005291445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VC40]
gi|417650402|ref|ZP_12300174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21189]
gi|417900243|ref|ZP_12544133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21266]
gi|418320090|ref|ZP_12931454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VCU006]
gi|418571347|ref|ZP_13135583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21283]
gi|418875946|ref|ZP_13430195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418907014|ref|ZP_13461035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|440707009|ref|ZP_20887724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21282]
gi|440735443|ref|ZP_20915049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus DSM 20231]
gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus COL]
gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. Newman]
gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21189]
gi|341848923|gb|EGS90078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21266]
gi|365228406|gb|EHM69590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VCU006]
gi|371980515|gb|EHO97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21283]
gi|374363906|gb|AEZ38011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus VC40]
gi|377761470|gb|EHT85341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377768372|gb|EHT92155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|436430654|gb|ELP28013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus DSM 20231]
gi|436506495|gb|ELP42290.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21282]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus RF122]
gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus RF122]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|384548307|ref|YP_005737560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus ED133]
gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ED133]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZC1]
gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZC1]
Length = 455
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 137/248 (55%), Gaps = 11/248 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T+ ++A +N + +G + I DTR + + F G+H + H+F+ + + K
Sbjct: 4 TLKQLAAWLNEDMAAFGDTVVSGISIDTRTI--QQGDLFVPFRGEHTNGHKFVM-QAFEK 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + + N +G+ + + + +L MA RN +G+TGS GK++
Sbjct: 61 GAGASLWQKDEPNPPEGYPLLFVD---DPELALQEMARAYRNEH-KAKFIGITGSNGKTS 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK ++A L V ++ GN+NN++G+ ++++ +D D+AVLEMGMSG GEI L++
Sbjct: 117 TKDILAGTLAPF-FKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSK 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-R 264
+ARP + V+ N+G++H++ LGS +A+AK EI Q + + + D+PL+ L +
Sbjct: 176 LARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQ 235
Query: 265 GVRKVFFG 272
++ V FG
Sbjct: 236 HLQSVPFG 243
>gi|386729769|ref|YP_006196152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 71193]
gi|387603360|ref|YP_005734881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
aureus subsp. aureus ST398]
gi|404479360|ref|YP_006710790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus 08BA02176]
gi|418310462|ref|ZP_12922002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21331]
gi|418979358|ref|ZP_13527154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus DR10]
gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
aureus subsp. aureus ST398]
gi|365236649|gb|EHM77533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21331]
gi|379992789|gb|EIA14239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus DR10]
gi|384231062|gb|AFH70309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 71193]
gi|404440849|gb|AFR74042.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus 08BA02176]
Length = 451
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|422036437|gb|AFX74862.1| UDP-N acetylmuramyl tripeptide-D-Ala-D-Ala ligase [Staphylococcus
aureus]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus D30]
gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus 930918-3]
gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A9765]
gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus 132]
gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|384862734|ref|YP_005745454.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384870632|ref|YP_005753346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus T0131]
gi|387143798|ref|YP_005732192.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus TW20]
gi|415688400|ref|ZP_11452115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CGS01]
gi|418277202|ref|ZP_12891816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21178]
gi|418286711|ref|ZP_12899352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21209]
gi|418319266|ref|ZP_12930650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21232]
gi|418580005|ref|ZP_13144095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418641100|ref|ZP_13203314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-24]
gi|418646535|ref|ZP_13208637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-88]
gi|418658657|ref|ZP_13220370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-111]
gi|418871134|ref|ZP_13425521.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-125]
gi|418904422|ref|ZP_13458459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418912632|ref|ZP_13466609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG547]
gi|418926495|ref|ZP_13480391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|418929426|ref|ZP_13483310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|418947909|ref|ZP_13500248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-157]
gi|418955775|ref|ZP_13507711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-189]
gi|419774767|ref|ZP_14300724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CO-23]
gi|422743010|ref|ZP_16797006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA177]
gi|422745972|ref|ZP_16799907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA131]
gi|424786071|ref|ZP_18212864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus CN79]
gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus 930918-3]
gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus D30]
gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus TW20]
gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A9765]
gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CGS01]
gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA177]
gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus T0131]
gi|365165924|gb|EHM57672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21209]
gi|365173680|gb|EHM64166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21178]
gi|365241003|gb|EHM81760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21232]
gi|375019863|gb|EHS13413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-24]
gi|375032692|gb|EHS25918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-88]
gi|375037788|gb|EHS30796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-111]
gi|375369068|gb|EHS72959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-125]
gi|375370500|gb|EHS74305.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-189]
gi|375374091|gb|EHS77735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-157]
gi|377693344|gb|EHT17716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377721139|gb|EHT45280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377736618|gb|EHT60633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377739858|gb|EHT63858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377741346|gb|EHT65335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|383971435|gb|EID87510.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CO-23]
gi|421955597|gb|EKU07933.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus CN79]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|338975615|ref|ZP_08630966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bradyrhizobiaceae bacterium SG-6C]
gi|338231359|gb|EGP06498.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bradyrhizobiaceae bacterium SG-6C]
Length = 478
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 17/268 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++ +WT + E++ P + I D+R L P + +FAI G D H+F+
Sbjct: 2 SAALWTSAAMTEAMRAARRGALPDNVTGISIDSRTLTPG--EAYFAIKGDVHDGHDFVEA 59
Query: 81 ELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L + V+ + + D + V+ + L +LV++A +R +R G ++ VT
Sbjct: 60 ALKNGASLAVVAESHADKFPADARLLIVD-----DVLAALVDLAKASR-ARLGGKVIAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++TK + L G S ++NN GV LSL ++ A+ E+GM+ G
Sbjct: 114 GSVGKTSTKEALRTVLRPQG-ETHASAASFNNHWGVPLSLARCPASMKFAIFEIGMNHAG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L RM RP + ++ V HLE +E +A AK EIF + G VLN D+ A
Sbjct: 173 EIEPLVRMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFAGVEPGGAAVLNRDNSQFA 232
Query: 259 NLTVPRGVRK----VFFGWRRGCDVRLV 282
L K V FG D RL+
Sbjct: 233 RLRKSAKAAKIGHVVSFGSDEKADARLI 260
>gi|386831665|ref|YP_006238319.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus HO 5096 0412]
gi|417799435|ref|ZP_12446575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21310]
gi|418655917|ref|ZP_13217749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-105]
gi|334273766|gb|EGL92105.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21310]
gi|375035303|gb|EHS28433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-105]
gi|385197057|emb|CCG16702.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus HO 5096 0412]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|418561994|ref|ZP_13126463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21262]
gi|371974832|gb|EHO92147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21262]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus USA300_TCH959]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus Mu50]
gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus N315]
gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JH9]
gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JH1]
gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu3]
gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9781]
gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9763]
gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9299]
gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A8115]
gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6300]
gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6224]
gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A5937]
gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus ED98]
gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A8117]
gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A10102]
gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MR1]
gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
gi|384865267|ref|YP_005750626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387151208|ref|YP_005742772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D- alanyl ligase
[Staphylococcus aureus 04-02981]
gi|415694065|ref|ZP_11455645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS03]
gi|417651636|ref|ZP_12301396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21172]
gi|417655388|ref|ZP_12305101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21193]
gi|417795557|ref|ZP_12442777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21305]
gi|417803229|ref|ZP_12450274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21318]
gi|417892681|ref|ZP_12536728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21201]
gi|418315854|ref|ZP_12927306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21340]
gi|418425252|ref|ZP_12998346.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS1]
gi|418428144|ref|ZP_13001133.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS2]
gi|418431029|ref|ZP_13003931.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS3a]
gi|418434934|ref|ZP_13006786.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS4]
gi|418437702|ref|ZP_13009480.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440631|ref|ZP_13012318.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443606|ref|ZP_13015193.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS7]
gi|418446603|ref|ZP_13018065.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449688|ref|ZP_13021060.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452528|ref|ZP_13023851.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455484|ref|ZP_13026735.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458360|ref|ZP_13029551.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418567930|ref|ZP_13132289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21272]
gi|418638732|ref|ZP_13201015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-3]
gi|418652301|ref|ZP_13214269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-99]
gi|418661299|ref|ZP_13222891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-122]
gi|418878940|ref|ZP_13433171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881778|ref|ZP_13435990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418884408|ref|ZP_13438598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418887112|ref|ZP_13441255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418895678|ref|ZP_13449769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|418915214|ref|ZP_13469181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920911|ref|ZP_13474839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418932400|ref|ZP_13486228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|418991999|ref|ZP_13539657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|419783574|ref|ZP_14309358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-M]
gi|424771981|ref|ZP_18199097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CM05]
gi|443637664|ref|ZP_21121735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21236]
gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus N315]
gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu50]
gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus JH9]
gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JH1]
gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu3]
gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9781]
gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9763]
gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9299]
gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A8115]
gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6300]
gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6224]
gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A5937]
gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus ED98]
gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A10102]
gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A8117]
gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D- alanyl ligase
[Staphylococcus aureus 04-02981]
gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS03]
gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21172]
gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21193]
gi|334270917|gb|EGL89313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21305]
gi|334272867|gb|EGL91222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21318]
gi|341857247|gb|EGS98063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21201]
gi|365242442|gb|EHM83149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21340]
gi|371981119|gb|EHO98306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21272]
gi|375020733|gb|EHS14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-3]
gi|375022085|gb|EHS15577.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-99]
gi|375039090|gb|EHS32034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-122]
gi|377692853|gb|EHT17232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377692976|gb|EHT17353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|377711482|gb|EHT35713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|377713241|gb|EHT37450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377721407|gb|EHT45539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377723841|gb|EHT47962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377729774|gb|EHT53857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377754657|gb|EHT78564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377762456|gb|EHT86319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|383364871|gb|EID42176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-M]
gi|387716293|gb|EIK04352.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS2]
gi|387716988|gb|EIK05023.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS3a]
gi|387717048|gb|EIK05074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS1]
gi|387723830|gb|EIK11541.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS4]
gi|387725447|gb|EIK13061.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS5]
gi|387728590|gb|EIK16074.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733389|gb|EIK20573.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS8]
gi|387734874|gb|EIK22023.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS7]
gi|387735069|gb|EIK22208.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS9]
gi|387742474|gb|EIK29289.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743011|gb|EIK29810.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387744155|gb|EIK30926.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402347511|gb|EJU82539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CM05]
gi|408424042|emb|CCJ11453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408426031|emb|CCJ13418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408428019|emb|CCJ15382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408430008|emb|CCJ27173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408431994|emb|CCJ19309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408433989|emb|CCJ21274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408435981|emb|CCJ23241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408437964|emb|CCJ25207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|443405199|gb|ELS63808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21236]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|424736337|ref|ZP_18164797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZB2]
gi|422949940|gb|EKU44313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZB2]
Length = 455
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 137/248 (55%), Gaps = 11/248 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T+ ++A +N + +G + I DTR + + F G+H + H+F+ + + K
Sbjct: 4 TLKQLAAWLNEDMAAFGDTVVSGISIDTRTI--QQGDLFVPFRGEHTNGHKFVM-QAFEK 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + + N +G+ + + + +L MA RN +G+TGS GK++
Sbjct: 61 GAGASLWQKDEPNPPEGYPLLFVD---DPELALQEMARAYRNEH-KAKFIGITGSNGKTS 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK ++A L V ++ GN+NN++G+ ++++ +D D+AVLEMGMSG GEI L++
Sbjct: 117 TKDILAGTLAPF-FKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSK 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-R 264
+ARP + V+ N+G++H++ LGS +A+AK EI Q + + + D+PL+ L +
Sbjct: 176 LARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQ 235
Query: 265 GVRKVFFG 272
++ V FG
Sbjct: 236 HLQSVPFG 243
>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
SG-1]
gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
SG-1]
Length = 458
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 121/213 (56%), Gaps = 12/213 (5%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--V 104
G + D+R + K F G+ D H+F+ + G + + N +G +
Sbjct: 28 GGVSIDSRKI--EKGNLFIPFKGEKVDGHKFVEGAIKS-GAAASLWEKDVPNPPEGLPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE N+L +L N+A R+ +VG+TGS GK+TTK M+A L SL V ++
Sbjct: 85 IVE-----NSLQALQNLATAYRH-ELGIKVVGITGSNGKTTTKDMVANLL-SLKYKVQKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+N+ +G+ L+++ +++ ++AVLEMGMSG GEI +L+ +A P+ ++ N+G+SHL+
Sbjct: 138 QGNFNSHIGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A AK EI K + V ++PL+
Sbjct: 198 LGSREGIATAKMEIISGLKEDGLFVYYGEEPLL 230
>gi|414167987|ref|ZP_11424191.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Afipia
clevelandensis ATCC 49720]
gi|410888030|gb|EKS35834.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Afipia
clevelandensis ATCC 49720]
Length = 478
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 17/268 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++ +WT + E++ P + I D+R L P + +FAI G D H+F+
Sbjct: 2 SAALWTSAAMTEAMRAARRGTLPDNVTGISIDSRTLTPG--EAYFAIKGDVHDGHDFVEA 59
Query: 81 ELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L + V+ + + D + V+ + L +LV++A +R +R G ++ VT
Sbjct: 60 ALKNGASLAVVAESHADKFPADARLLIVD-----DVLAALVDLAKASR-ARLGGKVIAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++TK + L G S ++NN GV LSL +V A+ E+GM+ G
Sbjct: 114 GSVGKTSTKEALRTVLSPQG-ETHASAASFNNHWGVPLSLARCPASVKFAIFEVGMNHAG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +M RP + ++ V HLE +E +A AK EIF + G VLN D+ A
Sbjct: 173 EIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFAGVEPGGAAVLNRDNSQFA 232
Query: 259 NL---TVPRGVRKVF-FGWRRGCDVRLV 282
L G++++ FG D RL+
Sbjct: 233 RLRKSAKAAGIKQIVSFGSDEKADARLI 260
>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens E str. JGS1987]
gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens E str. JGS1987]
Length = 453
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|379021758|ref|YP_005298420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M013]
gi|418950866|ref|ZP_13503004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-160]
gi|359831067|gb|AEV79045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M013]
gi|375375279|gb|EHS78869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-160]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|384198888|ref|YP_005584631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
Length = 483
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 15/238 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIA++V+G+++ T D+R P F AI G+H D H+F++
Sbjct: 4 MSVEEIAKAVDGRLIGDADSESRSTNTVSDSRQAGPGS--VFVAIRGEHVDGHDFVAKTA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTG 139
V ++ ++V ++ G Q+ V+ L L R + F ++G+TG
Sbjct: 62 GQGATVAIVDHEVESD---GLPQIVVKDTVDALGELARHNIVRRRELDGDFD--IIGLTG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S GE
Sbjct: 117 SVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
I L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHV 233
>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens NCTC 8239]
gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens NCTC 8239]
Length = 453
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IRELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|402312251|ref|ZP_10831180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium ICM7]
gi|400370310|gb|EJP23298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium ICM7]
Length = 459
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 15/256 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+A + G+I+ + I D+R +K+ F + G+ DAH+F+ +Y
Sbjct: 5 TIKELAFATGGEIISGNENAVFSNIVIDSR--QADKDSLFVPLVGEKNDAHKFLGS-VYD 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
GC I ++ F V N +T +L + Y R S+ + LVGVTGSVGK+
Sbjct: 62 MGCRVAISSRKDIFLKDDFNIVLVN---DTTEALQKLGKYIR-SKLTLPLVGVTGSVGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT+ M+ALAL L VF++ N+N++VGV ++L I+ +I V+E+GMS GE+ +A
Sbjct: 118 TTREMVALALSDL--KVFKTPNNFNSQVGVPITLSRINDE-EIGVIELGMSQFGEMERIA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ + +V N+G +H+E+L + E++ K I K G V LNAD+ L+ + +
Sbjct: 175 KIVNCDCALVTNIGTAHIENLHTRENIRAEKFHIMDGMKEGSVVFLNADNDLLFDPPKEK 234
Query: 265 GVRKVFFGWR--RGCD 278
G+ +F + CD
Sbjct: 235 GIVYKYFSAKGNTSCD 250
>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 68-397]
gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus E1410]
gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus M876]
gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C160]
gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M899]
gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C427]
gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C101]
gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus A017934/97]
gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 58-424]
gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M809]
gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M1015]
gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MN8]
gi|384866999|ref|YP_005747195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH60]
gi|415684902|ref|ZP_11449931.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS00]
gi|417887140|ref|ZP_12531276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21195]
gi|418565150|ref|ZP_13129565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21264]
gi|418582900|ref|ZP_13146973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418595159|ref|ZP_13158784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21342]
gi|418600967|ref|ZP_13164416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21345]
gi|418892595|ref|ZP_13446706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898668|ref|ZP_13452735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418901469|ref|ZP_13455520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|418909907|ref|ZP_13463897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418918126|ref|ZP_13472080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923795|ref|ZP_13477707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418983028|ref|ZP_13530732.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986648|ref|ZP_13534329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MRSA252]
gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 68-397]
gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus E1410]
gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus M876]
gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C101]
gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C427]
gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M899]
gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C160]
gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus A017934/97]
gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M1015]
gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 58-424]
gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M809]
gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MN8]
gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH60]
gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS00]
gi|341858412|gb|EGS99205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21195]
gi|371974774|gb|EHO92090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21264]
gi|374400384|gb|EHQ71499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21345]
gi|374402292|gb|EHQ73324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21342]
gi|377700705|gb|EHT25039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377702655|gb|EHT26975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377702763|gb|EHT27082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377709134|gb|EHT33405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377729735|gb|EHT53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377732974|gb|EHT57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377748969|gb|EHT72923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377749870|gb|EHT73809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG149]
gi|377758227|gb|EHT82113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|429730993|ref|ZP_19265635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Corynebacterium durum F0235]
gi|429146721|gb|EKX89769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Corynebacterium durum F0235]
Length = 471
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 133/265 (50%), Gaps = 24/265 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFIS---- 79
T+ E+AE V G++ G P + + D+R + P+ F A+ G D H+F +
Sbjct: 5 TLAEVAEIVGGQL--NGDPHVRVDSVEFDSRKVTPHT--LFVALRGARVDGHDFATSVDG 60
Query: 80 PELYGK--GCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV- 133
P L + V+ + N N D + N + L +L +A Y N + V
Sbjct: 61 PVLAARPVDAPSVVVPHIDNPQSNAD-AYAHDPSGDNASVLEALSKLARY--NIDHADVT 117
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++GVTGS GK++TK +IA ++ LG V G++NN +G + + D+ D V E+
Sbjct: 118 VIGVTGSAGKTSTKDLIASVVQRLGSTVAPP-GSFNNELGHPYTALRCDKTTDYLVAELS 176
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
G G + LA++A P I VVLNVG +HL GS E +A+AKGE+ V VLNAD
Sbjct: 177 ARGLGHVAHLAQIAPPTIGVVLNVGTAHLGEFGSREVIAQAKGELVAALPSTGVAVLNAD 236
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCD 278
DPLV N+ P + V F D
Sbjct: 237 DPLVTNM--PTSAKVVRFSTTMEAD 259
>gi|374710330|ref|ZP_09714764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sporolactobacillus inulinus CASD]
Length = 462
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 117/216 (54%), Gaps = 17/216 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV------IGNQVCNNWDKG 102
I TD+R P++N F + G HF+ H+FI+ + + + + ++
Sbjct: 28 IMTDSR--RPHRNSLFVPLIGDHFNGHQFINKAIENGAAAALWMEREPLPQDLPASFPLF 85
Query: 103 FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
V +TL +L NMA N + ++ VTGS GK+TTK M+ L F
Sbjct: 86 LVH-------DTLKALQNMAKGYLN-QVQPKVIAVTGSNGKTTTKDMLYSILRG-AFRTF 136
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN NN +GV L+++ + ++ VLEMGM+ GE+ L+++A+P + ++ N+G+SH+
Sbjct: 137 KTQGNLNNHIGVPLTILAMPEDTEVLVLEMGMNHFGELTFLSQIAKPNVALITNIGESHI 196
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
E LGS +A+AK EI K +L+ D+PL+A
Sbjct: 197 EYLGSRAGIAKAKLEIVNGLKKHGTLILDGDEPLLA 232
>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 453
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 139/259 (53%), Gaps = 14/259 (5%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+NE+ ++++G++L G I TDTR + +KN F A+ G +F+ + ++ +
Sbjct: 3 LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKI--DKNSLFIALKGNNFNGNNYVVEAIK 60
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
V +I ++ DKG V + + +L +A Y R + +VG+TGS
Sbjct: 61 AGATVAIIDEVNFKLEELNDKGTVIKVTDAKI----ALGALAKYYR-EKLGIKVVGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++A A S +VF++ GN+NN +G+ L + +D + DIAVLEMG + EI
Sbjct: 116 TGKTSTKDLVA-AFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +ARP++ ++ NVG SH+E L + E++ + K I K + V+N ++ ++ +
Sbjct: 175 HRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKV 234
Query: 261 TVPRGVRKVFFGWRRGCDV 279
+ G+ + D+
Sbjct: 235 NEDHEFKIEKIGYDKKYDL 253
>gi|417905574|ref|ZP_12549382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21269]
gi|341843037|gb|EGS84269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21269]
Length = 452
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens str. 13]
gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
perfringens str. 13]
Length = 453
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens D str. JGS1721]
gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens D str. JGS1721]
Length = 453
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus H19]
gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus H19]
Length = 438
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 23/232 (9%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
IN + + +NG + D+R A +KN F G++ D H F+S L
Sbjct: 5 INFLNQEING----------VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGA 52
Query: 89 GVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKST 145
G + N + VE +TL +L +A Y R+ + ++ VTGS GK+T
Sbjct: 53 AFYQRGTPIDENVSGPVIWVE-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTT 105
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK MI L + V ++ GN+NN +G+ L+++ +D +I++LEMGMSG EI L+
Sbjct: 106 TKDMIESVLHT-EFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSN 164
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+A+P+I V+ N+G+SH++ LGS E +A+AK EI K + + D+PL+
Sbjct: 165 LAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 216
>gi|389577556|ref|ZP_10167584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium cellulosolvens 6]
gi|389313041|gb|EIM57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium cellulosolvens 6]
Length = 465
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 125/253 (49%), Gaps = 19/253 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQ-------WFFAITGQHFDAHEFIS 79
T+ I E G GP G C DT + + F AI G+ D H FI
Sbjct: 4 LTLRNITEVCGGTY--HGPEG--CLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFI- 58
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
P + G + + DK + V +TL ++ ++A + ++ LVG+ G
Sbjct: 59 PGSFADGALAALAEVAPAETDKAVILVP-----STLQAIKDIAEFYL-AQLPADLVGIIG 112
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++TK M+A L + ++ GN+NN VGV L+ + +I VLEMG++ GE
Sbjct: 113 SVGKTSTKEMVAAVL-AQKYRTLKTEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGE 171
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
+ LA++ RP+ V NVG +HLE LGS + + +AK E+F ++N DD ++
Sbjct: 172 MHRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDEKGHVIVNGDDDKLST 231
Query: 260 LTVPRGVRKVFFG 272
++ GV V FG
Sbjct: 232 ISEVHGVAPVRFG 244
>gi|416841692|ref|ZP_11904547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O11]
gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O11]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + +
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWI 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
A5948]
gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
A5948]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens C str. JGS1495]
gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens C str. JGS1495]
Length = 453
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 16/219 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEI 213
>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
DG893]
gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
DG893]
Length = 463
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +A F A+ G++FD H++++ V+ + G Q+
Sbjct: 31 VSTDTRRIA--SGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDKA---DPSMGLPQIRV 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +T+++L +A RN+ + V +TGS GK+T + M+A L +G N + GN
Sbjct: 86 S---DTIDALAQLALANRNAS-TARFVAITGSSGKTTVREMVAAILSQVG-NTLATEGNL 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L + + +E+G SG GEI + RPE+ ++ N G +HLE G
Sbjct: 141 NNHIGVPLTLFRLSPEHQLGAIELGASGLGEIAHTVNIVRPEVVILTNAGQAHLEGFGGY 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDP 255
++V RAKGEI + + VLN+DDP
Sbjct: 201 DNVVRAKGEIIDGAPETGLVVLNSDDP 227
>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ochrobactrum intermedium LMG 3301]
gi|444310524|ref|ZP_21146145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum intermedium M86]
gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ochrobactrum intermedium LMG 3301]
gi|443486086|gb|ELT48867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum intermedium M86]
Length = 476
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 132/265 (49%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W +++ E++ G+ P GI I D+R L P + FFAI G+ FD H+F++ +
Sbjct: 5 LWKSDDMVEAMEGRPFGNLPGGITGISIDSRSLKPG--EAFFAIKGEQFDGHDFVTAAMA 62
Query: 84 -GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + V +++ N + VE + L +L + +R +R ++ VTGS
Sbjct: 63 AGAGLIVVAEHRLPAFGNSKVPMIVVE-----DVLEALTKLGIASR-ARSKAQIIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + D V E+GM+ EI
Sbjct: 117 VGKTTTKEALRHVLSEVG-KVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 176 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQL 235
Query: 258 ANLTVPRGVRK-VFFGWRRGCDVRL 281
L GV V FG D RL
Sbjct: 236 EELAEKAGVEHIVTFGENARSDYRL 260
>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfatibacillum alkenivorans AK-01]
gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfatibacillum alkenivorans AK-01]
Length = 472
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 15/283 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+T++EI ++ G+ G P + I D+R + F AI G+ D H+F+ +
Sbjct: 7 FTLSEIVQATGGERFS-GTPDLCFSGIAIDSR--TAMSSDLFIAIVGERLDGHDFVRQAI 63
Query: 83 YGKGCVG-VIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVT 138
G G G VI + ++ + G V +T +L +A R F + +T
Sbjct: 64 NG-GVRGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKG-FGVSIAAIT 121
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK + A L + V +S GN NN++G+ +L+G+ A AV+E+GM+ G
Sbjct: 122 GSNGKTTTKELTAAVLAA-KYRVHKSTGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFG 180
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ P+I V+ NVG HLE LGS+E V AKGE+ E+ VLN DD LV+
Sbjct: 181 EIARLTQICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELL-ENMANKTAVLNLDDKLVS 239
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301
L V FG VR + AN G+ + L+ E
Sbjct: 240 TLADKYQGETVLFGKGAKAQVRAKNIKHANEGVRFTLCLKDEE 282
>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus D139]
gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus D139]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|418283359|ref|ZP_12896106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21202]
gi|365167695|gb|EHM59073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21202]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R ++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRSIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chelativorans sp. BNC1]
gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chelativorans sp. BNC1]
Length = 477
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 14/260 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ +V G+ P G+ I D+R L + + FFAI G FD H+F + +
Sbjct: 4 LWTSDDLVAAVGGRPFGALPEGVTGISIDSRTL--QRGEAFFAIKGDRFDGHDFATLAMA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ VI + + V V + + A +R G ++ VTGS GK
Sbjct: 62 AGAGLLVISEEKLPALGRLTVP---KVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ AL S+G V + ++NN GV LSL + D A+ E+GM+ GEI L
Sbjct: 119 TTTKEMLRHALSSVG-TVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANL 260
++ +P I +V + +HL SL+++A AKGEIF G ++N DD L+A++
Sbjct: 178 TQLVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADM 237
Query: 261 TVPRGVRKVFFGWRRGCDVR 280
G+R V W G +VR
Sbjct: 238 AAEAGIRNV---WGFGENVR 254
>gi|406942298|gb|EKD74564.1| hypothetical protein ACD_44C00400G0006 [uncultured bacterium]
Length = 448
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R L F AI G +FD H+F++ + ++ + V ++ V
Sbjct: 25 VSIDSRTL--QSGALFIAIRGANFDGHDFLNKAIEKGATAAIVSHAVTSSIPLIIVP--- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T+ +L +A R + F+ L+ VTGS GK+TTKS++A L G ++ + G
Sbjct: 80 ----DTIKALGQLAQLWRQT-FTLPLIAVTGSCGKTTTKSILANILSQKGASL-ATTGTL 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + + AV+E+G + GEI +A +A+P I ++ + HLE GSL
Sbjct: 134 NNEIGVPLTLLQLKKTHQFAVIELGANHPGEISYVASLAKPTIALITTIAPVHLEGFGSL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
EDVA+AK EI+ V +LN DD RK F FG + +V
Sbjct: 194 EDVAKAKSEIYDALSDEGVAILNHDDTFYDFFKKQNQHRKYFTFGLTKKNNV 245
>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ljungdahlii DSM 13528]
gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ljungdahlii DSM 13528]
Length = 464
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 148/274 (54%), Gaps = 45/274 (16%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEF------ 77
+ +EI +V+G+++ K+ + TDTR + + F A+ G+ F+ +++
Sbjct: 4 MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIE--EKDIFIALKGERFNGNKYAAVASD 61
Query: 78 ------ISPELYGKG-----CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR 126
I E+Y K C VI QV+ +GN +L+++A + +
Sbjct: 62 KGASICIVDEVYFKKSEINECTSVI-------------QVK-DGN----QALLDLAEFYK 103
Query: 127 NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
S+ S ++G+TGS GK+TTK +I L S VF++ GN NN++G+ + ++ + D
Sbjct: 104 -SKLSVKVIGITGSAGKTTTKDLITSVL-SAKFKVFKTEGNLNNQIGLPHMIFRLNNSYD 161
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
+AVLEMGM+ +GEI +A+ ARP+I V+ NV +H+ +LG+ E++ AK EI +
Sbjct: 162 VAVLEMGMNNRGEIHSMAKAARPDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDN 221
Query: 247 VCVLNADDPLVANLTVPR-GVRKVFFGWRRGCDV 279
V+N+D+ +++NL R +R+V G D+
Sbjct: 222 TLVINSDNDMLSNLKEDRFNIRRV--GLEENSDI 253
>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9635]
gi|417891551|ref|ZP_12535613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21200]
gi|418307714|ref|ZP_12919397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21194]
gi|418889889|ref|ZP_13444017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|418994782|ref|ZP_13542415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG290]
gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9635]
gi|341851968|gb|EGS92870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21200]
gi|365244088|gb|EHM84753.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21194]
gi|377741715|gb|EHT65701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377751206|gb|EHT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R ++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRSIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|442770731|gb|AGC71438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[uncultured bacterium A1Q1_fos_1070]
Length = 1025
Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats.
Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 23/236 (9%)
Query: 29 INEIAESVNGKILKWGPP--GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
+ + + G++++ P + D+R + P F A+ G+ D H+FI+ + G G
Sbjct: 543 LERVLGATGGRLVRGSPHRFSAVTIDSRSVTPG--CLFVAVRGERLDGHQFIAQAVAG-G 599
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTL---NSLVNMACYARNSRFSGVL------VGV 137
C GV+ + DK V N +V + +++V + AR R + + + V
Sbjct: 600 CGGVLIER-----DK-LHTVPDNPSVAVIEVADTIVALGQLARAHREAPEIAAKLRVIAV 653
Query: 138 TGSVGKSTTKSMIALALE---SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
TGS GK++TK +IA S + ++ GN NN +GV L+L+ + + AV+E+GM
Sbjct: 654 TGSSGKTSTKDLIAAVFSAHVSDASELLKTDGNLNNHLGVPLTLLRLRPGMRYAVVELGM 713
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
S +GEI LA +ARP++ V+ NVG +HLE+LGSLE++A AKGE+F G V
Sbjct: 714 SARGEIAYLASLARPDVGVITNVGPAHLETLGSLENIAAAKGELFAAMADGTTTVF 769
Score = 43.5 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 24/225 (10%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + P F A+ GQ D H FI+ +G I QV + D +Q+
Sbjct: 32 GEVRDDSRQVQPG--DLFVAVPGQTVDGHHFITSAAQ-RGARAAIVEQV--HPDCPLLQI 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES-------LGV 159
N L L M R S S L+G+TG+ GK+T+ ++ LE +G
Sbjct: 87 PVENATNALAQLA-MNQQGRPSD-SITLIGITGTNGKTTSNFLVETLLEEADLRPGLIGT 144
Query: 160 NVFQSYG-NWNNRVGVALSLI---GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV- 214
+++ G N + +L+ + + + M L L R+ RV
Sbjct: 145 VLYRGPGVNRSAPFTTPTALLLHRTLAEMAEHGAKAVTMEVSSHALALGRLYGVRFRVAA 204
Query: 215 -LNVGDSHLESLGSLEDVARAKGEIFQESKL----GDVCVLNADD 254
N+ HL+ G+++D AK +F E L G V+N DD
Sbjct: 205 FTNLTQDHLDLHGTMDDYFAAKCRLFTEHLLPAERGGRAVINLDD 249
>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 444
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 14/257 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T++++ + GK++ G DTR + KN FFA+ G D HEF+ L
Sbjct: 1 MFTLDDLLIATGGKLVSKGNEIFKEASIDTRTIG--KNDLFFALKGSKKDGHEFVDEALI 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
V N+ + +K V V+ +TL SL N+A Y R +F G ++ V GS GK
Sbjct: 59 KASGAVVSKNEGMDFKNKTVVIVD-----DTLKSLQNLAGYLR-KKFKGKIIAVVGSNGK 112
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK +IA L S + ++ GN+NN +GV L + I+ +I VLE+G + G+I EL
Sbjct: 113 TTTKELIASFL-SKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKEL 171
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ P+ ++ N+G H+E GS++ V + EI K N DD + +
Sbjct: 172 CDIVYPDYALITNIGYEHIEGFGSIQGVREGELEILPYVK---TVFANGDDKFLMDGLKR 228
Query: 264 RGVRKVFFGWRRGCDVR 280
+ + FG + CD R
Sbjct: 229 YSGQILTFGMSKECDFR 245
>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
thermopropionicum SI]
gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
thermopropionicum SI]
Length = 469
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ E+ G+I++ G PG + TDTR L K + FFA++G+ DAH F++
Sbjct: 5 TLKELERIACGRIIQ-GDPGTVLSSVSTDTRRL--KKGEIFFALSGERHDAHNFLAQAAG 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNS---RFSGVLVGVTGS 140
V+ + VE NTL +L +A + R S R V +
Sbjct: 62 AGAGCLVVSRTADLPAGVPVLAVE-----NTLAALQALAAFNRKSCGARVVAVTGSTGKT 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
K T S+++ L +L +S GN+NN +G+ L+L+ +D +IAV+EM M G GEI
Sbjct: 117 TTKDMTASILSTRLRTL-----KSEGNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A+P+ V+ N+G++HLE LG++ ++A AKGE+ + G +LNA+ P +
Sbjct: 172 DALCRIAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRRE 231
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301
+ +++G D+R + G +V+L+ ER
Sbjct: 232 AGRCRGKVIYYGIDCPADIRAANIRPEGRGSRFEVILDGER 272
>gi|418560718|ref|ZP_13125227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21252]
gi|371971140|gb|EHO88547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21252]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R ++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRSIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|387781061|ref|YP_005755859.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus LGA251]
gi|344178163|emb|CCC88649.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus LGA251]
Length = 452
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
sp. AL212]
gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
sp. AL212]
Length = 466
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN----NWDKGFV 104
+ TD+R L + + F A+ G+ FD +F+S KG V + + + D +
Sbjct: 25 VSTDSRTL--KQGELFVALIGERFDGGKFVS-NAKEKGAVAAMLQKDAEPAGLSGDFPVI 81
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---- 160
+V+ ++ L +A Y RN RFS ++GVTGS GK+TTK MIA L +
Sbjct: 82 RVQ-----DSRLGLGELAAYWRN-RFSLPVIGVTGSNGKTTTKEMIAAILRVAASDNAII 135
Query: 161 ------VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
V + GN NN +GV L+ + R AV+EMGM+ GEI L R+ARP I V+
Sbjct: 136 NDPAERVLATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLARPNIAVI 195
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
N G +H+E LGS+E VARAK EI + NADD
Sbjct: 196 TNAGAAHIEGLGSVEAVARAKAEILVGLDQSGTAIFNADD 235
>gi|387126894|ref|YP_006295499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylophaga sp. JAM1]
gi|386273956|gb|AFI83854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Methylophaga
sp. JAM1]
Length = 450
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 17/274 (6%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+++IAE +N ++ G ++ D+R + F A++G++ D H+FI
Sbjct: 6 LSKIAEQLNAEL--QGEDAVMTGSKIDSRQI--ENGDLFVALSGENMDGHDFIEQARLAG 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ + N + V+ + + +A R + + V V VTGS GK+T
Sbjct: 62 ASGALVNRYIANELPQIVVE-------DVTKAYGAIARLWRENSHAKV-VAVTGSNGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K MI+ L G NV + GN NN +GV L+L ++ + D AV+EMG + GEI L
Sbjct: 114 LKEMISSILAQCG-NVLATKGNLNNNLGVPLTLTRLNDSYDYAVIEMGANHSGEIATLVA 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
MA P++ V+ NVG +HLE GSL+ VA AKGEI+ K + V+NAD P G
Sbjct: 173 MAEPDVAVINNVGAAHLEGFGSLQGVAEAKGEIYAGLKADGIGVINADMPYGDLWKHMLG 232
Query: 266 VR-KVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
R ++ FG ++ D+ + Q++ G V L+
Sbjct: 233 ARQRISFGLQQPADIAALDLQLSITGCHFMVRLD 266
>gi|384550879|ref|YP_005740131.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 452
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
L2-32]
gi|154083033|gb|EDN82078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium adolescentis L2-32]
Length = 489
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 139/266 (52%), Gaps = 23/266 (8%)
Query: 28 TINEIAESVNGKILKWGPPG------IICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ EIA++V+G+++ P TD+R + P F AI G+ D H+F+ P+
Sbjct: 5 SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGS--VFVAIAGERVDGHDFV-PK 61
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACY------ARNSRFSGVLV 135
+ +G V + + + VE NT+ +L +A + A S F+ ++
Sbjct: 62 VGAQGAVAALVDHEIAGAQVPQIVVE-----NTVKALGALAKHNIERRRALESPFT--VI 114
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++ L +G + G++NN +G+ L+ + ++ V+EMG +
Sbjct: 115 GITGSVGKTTTKDLLKSLLSKMG-DTVAPVGSFNNEIGLPLTSLKVNAGTRFLVVEMGAN 173
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L + P+I VVL VG +HL GS E +A+AK EI + G + +LNA+D
Sbjct: 174 HVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDE 233
Query: 256 LVANLTVPRGVRKVFFGWRRGCDVRL 281
VA ++ ++FG + D +L
Sbjct: 234 HVAAMSAIAPADVLWFGLPQKEDAQL 259
>gi|339484866|ref|YP_004696652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
sp. Is79A3]
gi|338807011|gb|AEJ03253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
sp. Is79A3]
Length = 467
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 121/247 (48%), Gaps = 25/247 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ TD+R L + F A+TG+ FD F+ KG V + Q + D +
Sbjct: 25 VSTDSRTL--REGDLFVALTGEKFDGSRFVDSAAE-KGAVAAMIQQAVDGNDLPAGLPLI 81
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---- 160
+V+ +T L +A + R SRF+ ++GVTGS GK+T K MIA L N
Sbjct: 82 RVK-----DTRLGLGQLAAHWR-SRFALPVIGVTGSNGKTTVKEMIAAILRQAAANSKAE 135
Query: 161 -------VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRV 213
V + GN NN +GV L+ + + AV+EMGM+ GEI L ++ +P I +
Sbjct: 136 VNEKTDYVLATEGNLNNDIGVPQMLLRLRQQYRYAVIEMGMNHVGEIAYLTQLVKPGIAL 195
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FG 272
+ N G +H+E LGS+E VARAK EIF V+NADD G RK+ FG
Sbjct: 196 ITNAGAAHIEGLGSVEAVARAKAEIFTGLDQQGTAVINADDQYATLWRECAGTRKIVDFG 255
Query: 273 WRRGCDV 279
R V
Sbjct: 256 LREKAQV 262
>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Coprobacillus sp. 29_1]
gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Coprobacillus sp. 29_1]
Length = 449
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 17/264 (6%)
Query: 27 WTINEIAESVNGKIL----KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I EI E+ NG++L ++ G DTR + + + G++ D H++I+ +
Sbjct: 1 MQIKEIIEATNGQLLSGDMEYDVNGF-TQDTRKIESGN--MYIPLVGENADGHQYIA-QA 56
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ G +I + DK + V+ +TL ++ +MA Y R R V VG+TGSVG
Sbjct: 57 FNLGASSIITAHKVHYPDKNVILVK-----DTLQAMSDMAKYLRMHRQVKV-VGITGSVG 110
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK MI ++ S ++ GN+NN +G+ L+++ + ++ +LEMGM+ GEI
Sbjct: 111 KTSTKDMI-YSVVSTKYKTLKTLGNYNNHIGLPLTILRLQNE-EVMILEMGMNHLGEIEH 168
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L ++A P++ + N+G +H+ LGS E + +AK EI K V+N D+ ++ +
Sbjct: 169 LTQIALPDVAAITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVN- 227
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQV 286
+ G CD++ + ++
Sbjct: 228 AENYHMIRVGQNEDCDLKAIDVEL 251
>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
Length = 456
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 114/223 (51%), Gaps = 27/223 (12%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P G ICTD+R L + F + G+ FD H F+ G +G Q V
Sbjct: 26 PVGPICTDSRQL--QGGELFVPLVGERFDGHGFL-------GQAAALGVQAA------VV 70
Query: 105 QVEGNGNV----------NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
Q G+V +TL++ +A R + V V VTGS GK+TT+ +I AL
Sbjct: 71 QRGRAGDVPPGLLHWLVDDTLDAYQQLALLHRRQLVAPV-VAVTGSAGKTTTRELIRAAL 129
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
LG V S GN NN +GV L+L+ V+EMGM G GEI L+R A+P++ V+
Sbjct: 130 GPLG-PVMASSGNENNDIGVPLTLLKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAVI 188
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
N+G +H+ LGS E +A AK EI + K + V+ A DPL+
Sbjct: 189 TNIGTAHIGRLGSREAIATAKCEITSQLKPDGLLVIPAGDPLL 231
>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
Length = 471
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 13/216 (6%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV-- 104
G +CTD+R L P +F + G+ FD H F++ + + + G +
Sbjct: 30 GPVCTDSRTLEPGS--FFIPLRGERFDGHRFLANAVERGAQAAFVARDCAHAVPDGLLHW 87
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+VE +TL + +A R + S +V VTGS GK+TT+ +I AL LG +V S
Sbjct: 88 RVE-----DTLLAYQQLATLHRR-QLSAAVVAVTGSAGKTTTRELIRSALAPLG-DVQAS 140
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N NN +GV L+L+G R V+EMGM G GEI L+R A P+I V+ N+G +H+
Sbjct: 141 DSNNNNDIGVPLTLLGAHREHAAVVVEMGMRGAGEIERLSRCAEPQIAVITNIGTAHIGR 200
Query: 225 LGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVAN 259
LGS +A AK EI S LG + V+ A D L+ +
Sbjct: 201 LGSRAAIASAKCEITAALSPLG-IVVIPAGDALLED 235
>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
sp. MWYL1]
gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
sp. MWYL1]
Length = 448
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 135/256 (52%), Gaps = 19/256 (7%)
Query: 28 TINEIAESVNGKILKWG-PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
T+++IA++ +G+++ + TDTR + F A+ G+ FD H++I + +G
Sbjct: 6 TLSDIAKACDGELIGEDCSLNAVVTDTRKIV--SGCLFVALKGERFDGHDYIGQAVQ-EG 62
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKS 144
VGV+ ++V V+ V ++ + AR R F G +V +TGS GK+
Sbjct: 63 AVGVVSDRV----------VDVPNYVKVFDTTLAYGVIARLIRDAFKGPVVCITGSNGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
T K +A +L NV ++ N NN++GV +L+ +D D+AV+E G S GEI LA
Sbjct: 113 TVKDWLAQSLTD--KNVLKTRANLNNQIGVPQTLLELDADNDVAVIEAGTSFTGEIPLLA 170
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A P+I V+ N SH E LG +ED+A+ KG + S VLN+DD
Sbjct: 171 KVAFPDIVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNASVVLNSDDEYFDYWCGLA 230
Query: 265 GVRKVF-FGWRRGCDV 279
G R+V+ FG+ D+
Sbjct: 231 GDRQVYSFGFTESADL 246
>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
ferrireducens T118]
gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodoferax ferrireducens T118]
Length = 480
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE- 107
+ TDTR LAP F A+ G+HFDAH+F++ + +G V VC D G V+ +
Sbjct: 32 VHTDTRTLAPGD--LFVALRGEHFDAHDFLA-QAKAQGAVAA----VCQASDAGDVEAKL 84
Query: 108 ------GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
G +T +L +A R ++F+ L+ VTGS GK+T MIA L +
Sbjct: 85 RAVGLPGLLVPDTKLALAQLATQWR-AQFTLPLIAVTGSNGKTTVTQMIAAILRAYKPQA 143
Query: 162 FQS-YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
+ S GN NN +GV L+++ + R +IAV+E+GM+ GEI LA +A+P + +V N
Sbjct: 144 YLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHPGEIATLAAIAQPTVALVNNAQRE 203
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
HLE + ++E VA+ G + V V ADD
Sbjct: 204 HLEFMATVERVAQENGSVIDALPAHGVAVFPADD 237
>gi|350551457|ref|ZP_08920672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thiorhodospira sibirica ATCC 700588]
gi|349797067|gb|EGZ50845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thiorhodospira sibirica ATCC 700588]
Length = 478
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 31 EIAESVNGKILKWGPPGIIC-----TDTRILAPNKNQWFFAITGQHFDAHEFIS----PE 81
E+A G L PP +C TDTR AP F A+ G FDAH + PE
Sbjct: 7 ELAHHTQGHWLS--PPADVCLQALGTDTRKPAPPVPALFVALAGARFDAHALLEQGPIPE 64
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
Y V+ ++ C + + +T +L +A A +R + LV +TGS
Sbjct: 65 RYA----AVMVSRPCA------IALPQLLVADTRRALGQLA-RAWRARLALPLVALTGSN 113
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+A L G + GN NN +GV L+L+ + AV+EMG + GEI
Sbjct: 114 GKTTVKEMLATILRQRG-PTLATQGNLNNDIGVPLTLLSLQEQHQYAVIEMGANHPGEIA 172
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L ++A+PE+ ++ N G +HLE GS+E VA AKGEI+ V V+ D+ PL
Sbjct: 173 YLTQLAQPEVALITNAGPAHLEGFGSIEGVAHAKGEIYGGLGASGVAVIALDEQYAPLWQ 232
Query: 259 NLTVPR 264
+L R
Sbjct: 233 SLNTQR 238
>gi|357398807|ref|YP_004910732.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386354852|ref|YP_006053098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
D-alanyl-alanyl ligase [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337765216|emb|CCB73925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365805360|gb|AEW93576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
D-alanyl-alanyl ligase [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 474
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 129/271 (47%), Gaps = 21/271 (7%)
Query: 28 TINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ E+A++V G + P G + D+R + P F A G+ D H++ + +
Sbjct: 5 TLAEVAQAVGGSMHDIPDPQAPVGGPVVIDSREVRPGG--LFAAFRGERVDGHDYAA-QA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V V+ + G + + L +L +R +V +TGS G
Sbjct: 62 VADGAVAVLATRPL-----GVPAIVVDDVQRALGALARTVI----ARLGTTVVALTGSSG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK +IA L+ L V+ + G+ NN +G+ L+ + D VLEMG G G I
Sbjct: 113 KTSTKDLIAQVLQRLAPTVW-TPGSLNNEIGLPLTALRADDGTRHLVLEMGARGIGHIRY 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKL---GDVCVLNADDPLVAN 259
L + P I VVLNVG +HL G E +A+AKGE+ + G V VLNADDPLV
Sbjct: 172 LTELTPPRIGVVLNVGSAHLGEFGGREQIAQAKGELVEALPAGADGGVAVLNADDPLVRA 231
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ R V FG +VR ++ +GG
Sbjct: 232 MAARTTARVVLFGESEEAEVRAEDVRLDDGG 262
>gi|372486937|ref|YP_005026502.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechlorosoma suillum PS]
gi|359353490|gb|AEV24661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechlorosoma suillum PS]
Length = 469
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 133/261 (50%), Gaps = 18/261 (6%)
Query: 31 EIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
E+A + NG +G G + TD+R + + + F A+ G+ FD HE+++ C
Sbjct: 6 EVARATNGT--AYGSNVLFGGVSTDSRSV--GRGELFVALRGERFDGHEYLAQAGERGAC 61
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V+ +G V + +T +L +A Y R ++FS L+ VTGS GK++TK
Sbjct: 62 AAVVAVDTVEQL-QGKVSLPLVAVADTRLALGALAGYWR-AKFSLPLIAVTGSNGKTSTK 119
Query: 148 SMIALALESLGV--------NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
MIA L++ V V + GN+NN +G+ L+L+ + V+EMGM+ GE
Sbjct: 120 EMIASILQAQAVLDGYDPAMVVLATQGNFNNDIGLPLTLLKLRTTHRSGVIEMGMNHPGE 179
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L R+A+P + +V N +HLE +G L+ VA K I+ K G V +++ADD A
Sbjct: 180 IGYLTRLAQPTVALVTNAQRAHLEGMGDLQQVAEEKATIYAGLKPGGVALVSADDAFAAY 239
Query: 260 LT-VPRGVRKVFFGWRRGCDV 279
V R V FG + DV
Sbjct: 240 WKGVNERRRVVTFGLDKPADV 260
>gi|418599090|ref|ZP_13162586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21343]
gi|374398140|gb|EHQ69330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21343]
Length = 452
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLMALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|421851841|ref|ZP_16284533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371479860|dbj|GAB29736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 461
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT E+ + +G L + I DTR L P F A+ G + D H I+
Sbjct: 2 SLLWTREELETATDGTFLGHTSVSVTGISIDTRTLTPG--DLFVALKGDNSDGHAHIATA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L KG V+ + D + V +T+ L +A AR +RF G +V VTGSV
Sbjct: 60 LE-KGAAAVLAHSAEGFTDPRILLV-----ADTMLGLQKLAQAAR-ARFKGKVVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L L G+ + ++NN GV L+L + R + E+GM+ GEIL
Sbjct: 113 GKTTTKEMLRLCLAPSGLT-HAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEIL 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
LA M +P++ V+ +G +HL +GSL+ +A+ K I G V ++ D
Sbjct: 172 PLANMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGVAIVPDD 223
>gi|392957431|ref|ZP_10322954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
macauensis ZFHKF-1]
gi|391876394|gb|EIT84991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
macauensis ZFHKF-1]
Length = 459
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 119/215 (55%), Gaps = 11/215 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
I D+R PN + I G FD H F+ + G + + G + ++ F
Sbjct: 27 ITKDSRESLPNA--LYVPIKGDRFDGHRFVLQAME-NGAIASLWAEGTPIPSDLPADFPL 83
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ + L L + ++ V++GVTGS GK++TK MI A+ + ++
Sbjct: 84 IIVRDTIEALQQLAKLYL----NKVKPVVIGVTGSNGKTSTKDMIE-AVVATTFKTHKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D ++ +LEMGM+ GEI L+++A+P++ ++ N+G+SH+E L
Sbjct: 139 GNYNNHIGLPLTILSMDEGTEVIILEMGMNHFGEISLLSKLAQPDLAIITNIGESHIEFL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
GS E +A+AK EI K + +L+ D+PL+ ++
Sbjct: 199 GSREGIAQAKLEIKDGLKESGLLILDGDEPLLQHV 233
>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
petrophila RKU-1]
gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermotoga petrophila RKU-1]
Length = 426
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 10/216 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F A+ G+ FD H+FI E G VI + N D+ F+ VE +++++L +A
Sbjct: 22 FVAVKGKRFDGHDFID-EALKNGAYAVIAERKTVNSDRIFL-VE-----SSVDALAKLA- 73
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ FSG +VG+TGS GK+TTK ++ L++ +VF++ GN N G+ LS++ +
Sbjct: 74 REKLGNFSGTVVGITGSSGKTTTKEILYNLLKN-KRSVFKTPGNMNTEYGLPLSILNDYK 132
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I VLEM S G+I L ++A P++ V+LNVG++HLE G+ E + K EI + SK
Sbjct: 133 GEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNAHLEFFGTRERIMETKMEIIKHSK 192
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
V DDP + VP + +FFG G V
Sbjct: 193 ENATAVTLFDDPDLRR-EVPCYRKTLFFGKEGGDSV 227
>gi|426405104|ref|YP_007024075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus str. Tiberius]
gi|425861772|gb|AFY02808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus str. Tiberius]
Length = 473
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 7/236 (2%)
Query: 29 INEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
+ IA+ KIL I TDTR A + Q F A+ G+ FDAH F+ + G
Sbjct: 6 LQTIAKVTGAKILSQKETNFAGIGTDTR--AQLQGQLFIALKGEAFDAHNFLEKAVES-G 62
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
++ ++ +K +V +TL SL + +AR+ S +VG+TGS GK+TT
Sbjct: 63 AAALMVHEENAQTEKLKDKVTILLVPDTLKSLQKLGNWARHES-SARIVGITGSNGKTTT 121
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K A AL ++V + G++NN GV +L+ + D+A++EMGM+ GEI EL +
Sbjct: 122 KEFTA-ALVGSAMDVHYNKGSFNNHWGVPFTLLQLPPKKDVAIIEMGMNHAGEITELVHI 180
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
A P++ V VG +H+E G++E VA AK EI++ + V + N D+ N+ V
Sbjct: 181 AEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYV 236
>gi|423372167|ref|ZP_17349507.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
gi|401099798|gb|EJQ07798.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
Length = 460
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 125/223 (56%), Gaps = 6/223 (2%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG 132
D HE++ E G V + + KGF + + +TL +L +A + R +
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGFPIIFVD---DTLFALQQLAQFYRR-EINV 111
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R + +LEM
Sbjct: 112 KVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERDTEFLILEM 170
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI G + + N
Sbjct: 171 GMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDGGLFLYNG 230
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
D+PL++ G+ FG + D+ Q+ G+ ++
Sbjct: 231 DEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKL 273
>gi|431794713|ref|YP_007221618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784939|gb|AGA70222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 478
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
C D+R++ FFA+ G+ D H++I V V + N + + EG
Sbjct: 27 CIDSRLV--KDGNIFFALVGEKVDGHDYIKAAWQKGASVVVAEKERLKNRPEISIP-EGK 83
Query: 110 GNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L+ M A+ + +V +TGS GK+TTK M+ L S V ++ N
Sbjct: 84 ALIQVDLGLIAMQSLAQTWVRQLGAKVVAITGSNGKTTTKDMVTAVL-SQKYRVHKNLEN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV ++++ +I VLEMGM G G+I L +ARP+I V+ N+G +HLE LG+
Sbjct: 143 QNNELGVPMTILNASENTEILVLEMGMRGLGQIAFLCGIARPDIGVITNIGTTHLELLGT 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
E++ARAK E+ Q VLN++D L V + F+G
Sbjct: 203 QENIARAKWELIQALPPEGFAVLNSEDEWSVKLAQESSVHQFFYG 247
>gi|383315698|ref|YP_005376540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Frateuria aurantia DSM 6220]
gi|379042802|gb|AFC84858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Frateuria aurantia DSM 6220]
Length = 452
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 12/253 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR + P F AI G+ D H+F L G +G V QV
Sbjct: 25 VTIDTRSIQPGN--LFVAIKGERVDGHDF----LAAAKASGAVGALVTRPVAVDLPQVLV 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L L + N + +VG+TGS GK+T KS++A A+ +L + GN+
Sbjct: 79 DDATLALGDLASSVRAQSNVQ----VVGITGSNGKTTVKSLVA-AILALQGRTHVNSGNY 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+L+ + + + AVLEMG G+I LA +ARP + +V N+ +HL +G+L
Sbjct: 134 NNELGLPLTLLAMPQDCEYAVLEMGAGKPGDIDYLAAIARPTVALVNNIAPAHLARMGTL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E VA KG I+Q V V+NAD+P L + R++ FG + DV A ++
Sbjct: 194 EGVAETKGAIYQHLPADGVAVINADEPFARFFLGLAGSRRQLSFGLEQKADVTATAIELH 253
Query: 288 NGGLGVQVVLEKE 300
G Q+ L E
Sbjct: 254 ASGSRFQLHLGDE 266
>gi|373494336|ref|ZP_09584941.1| hypothetical protein HMPREF0380_00579 [Eubacterium infirmum F0142]
gi|371968833|gb|EHO86287.1| hypothetical protein HMPREF0380_00579 [Eubacterium infirmum F0142]
Length = 460
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 135/271 (49%), Gaps = 34/271 (12%)
Query: 31 EIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+IA++V GK+++ + +C D+R F A+ G+ D H+F+ Y GC
Sbjct: 8 QIADAVKGKLIRGSAEEVAKDVCIDSR--NAKNGDLFCAMVGEFNDGHKFMKAA-YDNGC 64
Query: 88 VGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN-------SRFSGVLVGVT 138
++ ++ + V LV A YA +RF+ + VT
Sbjct: 65 RMMLISKEEMAETVPEDCALV-----------LVGDAMYALQELSAWYIARFNMKKIAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TT+ MI A+ G N S N N+ G+ L+L+ D ++ V+EMGM G
Sbjct: 114 GSVGKTTTRDMI-YAILRRGFNAGTSKANLNSETGMPLTLLSFDSSMQAVVIEMGMDALG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI---FQESKLGDVCVLNADDP 255
+I L +ARP++ V+ N+G SHLE LG+ E++ +AK EI F +SK V NADD
Sbjct: 173 QISRLTEIARPDVAVITNIGYSHLEKLGTRENIFKAKMEIVEGFDKSKF---LVANADDD 229
Query: 256 LVANLTVPRGVRKVF-FGWRRGCDVRLVAAQ 285
++A + + K+ G DVR+ A +
Sbjct: 230 MLATIDKNKVAYKIIRAGKAEDADVRVSAVE 260
>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acidobacterium capsulatum ATCC 51196]
gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acidobacterium capsulatum ATCC 51196]
Length = 465
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 8/251 (3%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R LA + FFA+ G FD H+F++ ++ +G VG + ++ +
Sbjct: 31 DSRTLA--TDDLFFAVKGDRFDGHDFVAAAIH-RGAVGAVVSRARAAELLPLIDHASLLL 87
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
V+ + + A + +VGVTGS GK+TTK IA L + G V +S GN NN
Sbjct: 88 VDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTKEAIAAVLGA-GYRVLKSQGNLNNN 146
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LED 230
G+ L L+ +D +IAV+EMGM+ GEI LAR+A P+ VV NVG +H+E+ +
Sbjct: 147 FGLPLQLLRLDTEDEIAVIEMGMNHAGEITALARIAMPDWGVVTNVGKAHVENFTDGIAG 206
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN-G 289
VARAK E+ Q + LN DD V+ R + FG RG L Q+ N G
Sbjct: 207 VARAKYELVQALPAEGIAFLNCDDAYVSQFGRDFHGRVILFG--RGPCAHLRVEQLENLG 264
Query: 290 GLGVQVVLEKE 300
G ++ + E
Sbjct: 265 AEGTRLTVSAE 275
>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii 'MSU Goat Q177']
gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii CbuK_Q154]
gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii 'MSU Goat Q177']
gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii CbuK_Q154]
Length = 446
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 124/234 (52%), Gaps = 16/234 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P+ F A+ G +FDA++FI+ + +G VG + N+V + V
Sbjct: 25 VSTDTRTIQPDS--LFIALRGPNFDANDFIA-KAEEQGAVGAVVNRVVKTTLP-LICVS- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A Y R +V VTGS GK+TT++++A G NV S ++
Sbjct: 80 ----DTLEALGRLARYQREQIPIPAIV-VTGSCGKTTTRALLASVFRQCG-NVLASEKSF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + A+LE+G + GEI L +A+P + ++ N G HLE GSL
Sbjct: 134 NNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGCDV 279
E VA+AKGEIF+ V+N DD L R R + FG + DV
Sbjct: 194 EGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR--RIISFGINQPADV 245
>gi|389805946|ref|ZP_10203090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter thiooxydans LCS2]
gi|388446577|gb|EIM02605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter thiooxydans LCS2]
Length = 457
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F AI G+ D H++++ ++ +V D Q+
Sbjct: 25 VAIDTRKLKPG--DLFVAIRGERVDGHDYLAEAAARGAVAALVTRKV----DSALPQLLV 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L L + RN R +VG+TGS GK+T K+++A L G S GN+
Sbjct: 79 DSAELALGDLASAVRAQRNVR----VVGITGSNGKTTVKTLVASILSRHG-RTHVSAGNF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ LSL+ + + + AV EMG G+I LA +ARP+I ++ + +HL +GS+
Sbjct: 134 NNELGLPLSLLAMPQDTEYAVFEMGAGKPGDIAYLAAIARPDIGLITLIAPAHLARMGSI 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
E VA KG ++Q + ++NADD + T G RKV FG + DV
Sbjct: 194 EGVAETKGALYQALPADGIAIINADDAFASFFTGLAGARKVLRFGLDQPADV 245
>gi|418575591|ref|ZP_13139741.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325993|gb|EHY93121.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 451
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 124/211 (58%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R + N+N F G+H D H++++ L G G G + N D + V
Sbjct: 29 VSIDSRDIH-NQN-LFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDENIDGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L+ V ++ G
Sbjct: 87 D-----DTLEALQHLAK-AYLEFVNPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D +I++LEMGMSG EI L+++A+P+I ++ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K G + + + D+PL+
Sbjct: 200 SREGIAKAKSEITLGLKPGGLFIYDGDEPLL 230
>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Synechococcus sp. WH 8102]
Length = 449
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 111/216 (51%), Gaps = 13/216 (6%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS--PELYGKGCVGVIGNQVCNNWDKG 102
P G ICTD+R L +F + G+ FD H F+ P L G+G V V +W
Sbjct: 25 PVGTICTDSRQL--KAGNFFVPLVGERFDGHRFLEQLPALGGQGAV------VSLDWTAP 76
Query: 103 FVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+ V+ TL + +A R + LV VTGS GK+TT+ +I L LG +
Sbjct: 77 LPSGLLHWRVDDTLAAYQQLALLHRR-QLGLPLVAVTGSAGKTTTRELIRAVLAPLGA-I 134
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
S GN NN +GV L+++G V+EMGM G GEI L+R P++ V+ N+G +H
Sbjct: 135 QASDGNNNNDIGVPLTVLGAGSDHAALVIEMGMRGPGEIARLSRCTEPDVAVITNIGTAH 194
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+ LGS E +A AK EI V V+ A DPL+
Sbjct: 195 IGRLGSREAIATAKCEITAALHPQGVVVIPAGDPLL 230
>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 451
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 124/211 (58%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R + N+N F G+H D H++++ L G G G + N D + V
Sbjct: 29 VSIDSRDIH-NQN-LFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDENIDGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L+ V ++ G
Sbjct: 87 D-----DTLEALQHLAK-AYLEFVNPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D +I++LEMGMSG EI L+++A+P+I ++ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K G + + + D+PL+
Sbjct: 200 SREGIAKAKSEITLGLKPGGLFIYDGDEPLL 230
>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
ATCC 27064]
gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Streptomyces clavuligerus ATCC 27064]
gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
27064]
gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
ATCC 27064]
gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Streptomyces clavuligerus ATCC 27064]
Length = 479
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 20/239 (8%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + TD+R + P F A G+ D H+F + G V V+ +
Sbjct: 29 GPVVTDSRRVGPGS--LFTAFAGERADGHDF-AERAVADGAVAVLATRPV---------- 75
Query: 107 EGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G + + + AR+ R V +TGS GK++TK +IA LE G V+
Sbjct: 76 -GVPAIVVDDVTAALGALARHVVERLGTTTVALTGSAGKTSTKDLIAQLLERKGPTVYPE 134
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L+ + D + + VLEMG G+I L + P I +VLNVG +HL
Sbjct: 135 -GNLNNEIGLPLTALRADESTEHLVLEMGARYIGDIRYLTGLVPPRIGLVLNVGTAHLGE 193
Query: 225 LGSLEDVARAKGEIFQ---ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
GS E +A AKGE+ + + G V VLNADDPLV + R V FG D+R
Sbjct: 194 FGSRERIAEAKGEMVESLPSGEEGGVAVLNADDPLVRAMAERTRARVVLFGEHSSADIR 252
>gi|398817975|ref|ZP_10576574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. BC25]
gi|398028773|gb|EJL22276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. BC25]
Length = 460
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 16/230 (6%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ- 94
IL G PG+ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 ILLAGSPGLALSSVHFDTREL--TAGSLFVALTGGARDGHDFLLQAAEQGAVAALVSNQE 73
Query: 95 -VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALA 153
+ N F + N +TL +A R S FS + +TGS+GK+T K ++A
Sbjct: 74 KIPVNLPNDFGLILVN---DTLRGFQKLAAAYRKS-FSFPRIAITGSIGKTTVKDIVAHV 129
Query: 154 LESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRV 213
L S V+++Y N+NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V
Sbjct: 130 LGSRS-PVYKTYKNFNNHIGVPLSLLQMEEKHQAAVLELGMNHAGEIDLLASLVQPDISV 188
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
+ +G+SH+E G+ E +A AK E+ + L + +LN D L+A+L
Sbjct: 189 ITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAHL 238
>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
Length = 445
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 31 EIAESVNGKILK---WGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+I KILK G P I D+R + + + F + GQ FDAH FI P+ +
Sbjct: 2 QITSQTLAKILKGSLVGSPNIPVKTFSIDSRTI--KQGEVFIPLKGQKFDAHNFI-PDAF 58
Query: 84 GKGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG VGVI + + K ++V +TL SL +A + R + F G ++GV GS G
Sbjct: 59 KKGAVGVISEREVDVPPGKFLIKVR-----STLESLREIAKFKREN-FKGKVIGVAGSAG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK +++ L S+ V++S GN N++VG+ L++ D VLE G S +GEI
Sbjct: 113 KTTTKELLSHLL-SIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKN 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
L + +P +R++ +G+ HLE GSLE V E+F
Sbjct: 172 LIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMF 208
>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 8802]
gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 8802]
Length = 457
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 118/209 (56%), Gaps = 7/209 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + P + F A+ G +FD H+F + + ++ + + K Q++
Sbjct: 33 ITTDSRYINPG--EIFLALRGNNFDGHDFANIAVDKGAIALIVDHHISVKSTKQIPQIQV 90
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A + R + + ++ +TGSVGK+TTK +I+ L + G+ V ++ N+
Sbjct: 91 K---DTLLAYQQVAHWWR-EQLTIPVIAITGSVGKTTTKELISAVLSNYGI-VHKTKENY 145
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + R D AV+EMGM G EI L+++ARP I ++ NVG +H+ LGS
Sbjct: 146 NNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIGRLGSK 205
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ E + N D+ L+
Sbjct: 206 EAIAQAKCELLAEMPPDATAIFNHDNSLL 234
>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
felis URRWXCal2]
gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
felis URRWXCal2]
Length = 449
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 24/247 (9%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F + G D H+++ + ++ QV N + V+ + +L
Sbjct: 34 KGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEINDKDKIILVD-----DCFETLQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NNR+G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQYDSL-VFASRGNFNNRLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ V+NAD ++ NL++ R FG +LV + L
Sbjct: 205 FENFSKNDIAVINADINCYNKIVSILKNLSINRVYN---FGISHNTPAQLVLYE----NL 257
Query: 292 GVQVVLE 298
G QV L+
Sbjct: 258 GEQVHLK 264
>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Candidatus Nitrospira defluvii]
gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Candidatus Nitrospira defluvii]
Length = 487
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 26/262 (9%)
Query: 26 IWTINEIAESVNGKILKWGPPG------------IICTDTRILAPNKNQWFFAITGQHFD 73
++T+ EI E +L PP + TD+R + K F A G+ FD
Sbjct: 12 LFTVEEICE-----VLSVRPPAGVTPQDLKQRIRRVVTDSRSV--RKGDLFIAFQGERFD 64
Query: 74 AHEFISPELYGKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRF 130
AH F+ P+ +G V I + + + V V G +TL + +A + RN RF
Sbjct: 65 AHTFV-PKALAQGAVCAIVQEDYRLPPAPKRTGVPVL-LGVRDTLEAYQRLATHYRN-RF 121
Query: 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVL 190
++ +TGS GK+TTK M+A + ++ GN NNR+GV +L + AV+
Sbjct: 122 PIPVIAITGSNGKTTTKEMVAQVVAQRW-KTLKTEGNLNNRIGVPQTLFQLAPRHQAAVI 180
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
EMG+ +G+ L +ARP I V+ N+G HLE GS+E A+AK E+ VL
Sbjct: 181 EMGVDQQGQTTRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDHLPQDGAVVL 240
Query: 251 NADDPLVANLTVPRGVRKVFFG 272
NADD L R V FG
Sbjct: 241 NADDEYFDYLAARAQCRVVAFG 262
>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
trichosporium OB3b]
gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
trichosporium OB3b]
Length = 474
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 104/206 (50%), Gaps = 7/206 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR LAP FFAI G+ D H+F++ + +G G + ++ G +
Sbjct: 31 ISIDTRTLAPG--DLFFAIKGEARDGHDFVAAA-FERGAAGAVVDEAHAGALAGRAPLYV 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+V SL + AR R + +VGVTGSVGK++TK M A L G S ++
Sbjct: 88 VKDVQ--ESLERLGARARE-RSAAYVVGVTGSVGKTSTKEMAAAVLSRFGA-AHASAASY 143
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN+ GV LSL + A V E+GM+ GEI LA + P + +V V HLE L
Sbjct: 144 NNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAALAPLVEPHVALVTRVAPVHLEHFACL 203
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
E +A AK EIF G V +LN DD
Sbjct: 204 EAIADAKSEIFSGVVDGGVAILNRDD 229
>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Streptomyces griseoaurantiacus M045]
gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Streptomyces griseoaurantiacus M045]
Length = 471
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 123/261 (47%), Gaps = 21/261 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIICT-----DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIAE V G+ P ++ T D+R P F A G+ D H++ + +
Sbjct: 5 SLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGS--LFVAFVGERADGHDY-ARAV 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V V+G++ G + + L +L R LV +TGS G
Sbjct: 62 VETGAVAVLGSRPV-----GVPAIVVDDVQRALGALARHVV----ERLGATLVALTGSAG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK +IA L + VF + G+ NN +G+ L+ + VLEMG G G I
Sbjct: 113 KTSTKDLIAQVLRTKAPTVF-TPGSLNNEIGLPLTALSATAETRFLVLEMGARGIGHIRY 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE---SKLGDVCVLNADDPLVAN 259
L + P I +VLNVG +H+ G E +A+AKGE+ + ++ G V VLNADDP V
Sbjct: 172 LTELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKA 231
Query: 260 LTVPRGVRKVFFGWRRGCDVR 280
+ R + FG DVR
Sbjct: 232 MAARTTARVLLFGESDEADVR 252
>gi|420202796|ref|ZP_14708384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM018]
gi|394268975|gb|EJE13520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM018]
Length = 451
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 121/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|428775215|ref|YP_007167002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halothece sp. PCC 7418]
gi|428689494|gb|AFZ42788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halothece sp. PCC 7418]
Length = 452
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 11/213 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--V 106
+ TDTR L + + F A+ G+ FD H F+ L ++ + Q V
Sbjct: 33 VNTDTRHL--QRGEVFVALVGEKFDGHHFVEKALQAGASALILNRNFSRDLPSDVSQFYV 90
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E NTL + +A + R ++ ++G+TGSVGK+TTK +IA L G V ++
Sbjct: 91 E-----NTLVAYQQIAHWWR-KQYQIPVIGITGSVGKTTTKELIAGVLSQYG-KVLKTEA 143
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV +L+ ++ D AV+EM M +GEI EL +A+P + ++ NVG +H+ LG
Sbjct: 144 NENNEIGVPKTLLRLNSDYDYAVVEMAMRARGEIAELTEIAQPTMGLITNVGTAHIGRLG 203
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
S + +A+AK E+ Q+ +LN D+ + N
Sbjct: 204 SRQAIAQAKCELLQQMPEDATAILNHDNTRLIN 236
>gi|392970004|ref|ZP_10335413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus equorum subsp. equorum Mu2]
gi|403046048|ref|ZP_10901523.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus sp. OJ82]
gi|392511932|emb|CCI58618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus equorum subsp. equorum Mu2]
gi|402764210|gb|EJX18297.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus sp. OJ82]
Length = 451
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 121/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCN-NWDKGFVQV 106
+ D+R++ N F G++ D H++++ L G G V + + N D + V
Sbjct: 29 VSIDSRVI--NNQNLFIPFKGENVDGHKYVAQALKDGAGAVFYQKDVTLDKNIDGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
E NTL +L +A Y F G ++ VTGS GK+TTK MI L+ V ++
Sbjct: 87 E-----NTLKALQQLAKAYLE---FVGPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ +D+ +I++LEMGMSG EI L+ +A P I ++ N+G+SH++
Sbjct: 138 QGNYNNEIGLPLTILELDQDTEISILEMGMSGFNEIELLSNLAEPNIAIITNIGESHMQE 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI + V + + D+PL+
Sbjct: 198 LGSREGIAQAKAEIITGLRSNGVFIYDGDEPLL 230
>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH130]
gi|417898368|ref|ZP_12542289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21259]
gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH130]
gi|341848728|gb|EGS89888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21259]
Length = 452
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ + +P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|395786575|ref|ZP_10466302.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th239]
gi|395422873|gb|EJF89069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th239]
Length = 481
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 141/289 (48%), Gaps = 18/289 (6%)
Query: 24 SPIWTINEIAESVNGKI---LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +E+A+++ G++ L GI D+R K FF I G FD H+F
Sbjct: 2 SALWTSSELADALKGEVTGKLSEEFHGI-SIDSR--TAQKGDIFFCIKGDQFDGHDFAQK 58
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ V + V N K + + L L N+A AR R ++ +T
Sbjct: 59 AIENGASVLI----VHKNRTKSLYHLATPMIAVDDVLQGLQNLAKAAR-LRSKAKIIAIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK ++ +L ++G V + ++NN GV L+L + + D V E+GM+
Sbjct: 114 GSVGKTTTKELLRQSLATVG-KVHANPLSFNNHWGVPLTLARMPKETDYGVFEIGMNHAN 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP++ +V + HL SLED+A AK EIF+ + LNADD +
Sbjct: 173 EIRPLVKLVRPDVAIVTQIAAVHLGFFSSLEDIADAKAEIFEGMNDNGIVFLNADDAFFS 232
Query: 259 NL---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303
L + +GV+ ++ FG D RL + + +++++ E M
Sbjct: 233 YLRDKALLQGVQTIWCFGEAAFADYRLEKLHMMSDSSVMKILIRGEEAM 281
>gi|418645445|ref|ZP_13207567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-55]
gi|421150951|ref|ZP_15610602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. Newbould 305]
gi|443640148|ref|ZP_21124143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21196]
gi|375022964|gb|EHS16430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-55]
gi|394329035|gb|EJE55162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. Newbould 305]
gi|443405706|gb|ELS64301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21196]
Length = 452
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 13/212 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ + +P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS E +A+AK EI K + + D+PL+
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLL 230
>gi|418326941|ref|ZP_12938116.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU071]
gi|365224047|gb|EHM65317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU071]
Length = 451
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 121/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNKGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium adolescentis ATCC 15703]
gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium adolescentis ATCC 15703]
Length = 489
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 138/266 (51%), Gaps = 23/266 (8%)
Query: 28 TINEIAESVNGKILKWGPPG------IICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ EIA++V+G+++ P TD+R + P F AI G+ D H+F+ P+
Sbjct: 5 SLTEIAQAVDGRLMPTTVPTDEPVAISAFTDSRQIVPGS--VFVAIAGERVDGHDFV-PK 61
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACY------ARNSRFSGVLV 135
+ +G V + + + VE NT+ +L +A + A S F+ ++
Sbjct: 62 VGAQGAVAALVDHEIAGAQVPQIVVE-----NTVKALGALAKHNIERRRALESPFT--VI 114
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++ L +G + G++NN +G+ L+ + ++ V EMG +
Sbjct: 115 GITGSVGKTTTKDLLKSLLSKMG-DTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAEMGAN 173
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L + P+I VVL VG +HL GS E +A+AK EI + G + +LNA+D
Sbjct: 174 HVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDE 233
Query: 256 LVANLTVPRGVRKVFFGWRRGCDVRL 281
VA ++ ++FG + D +L
Sbjct: 234 HVAAMSAIAPADVLWFGLPQKEDAQL 259
>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Rickettsiella
grylli]
gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Rickettsiella
grylli]
Length = 444
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 12/231 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R + P+ + F A+ G+ +D H ++ E G + +V D V VE
Sbjct: 24 ISVDSRSIKPH--ELFIALRGKQYDGHHYVG-EAQQHGAAAAVVEEVIET-DLPLVLVE- 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L +A + R +FS ++G+TGS GK+TT+ MI L +G V ++ N+
Sbjct: 79 ----DTRKALGELAKHHRR-QFSIPIIGLTGSCGKTTTREMIRSILAEMG-PVLANFKNF 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+L+ + AV+EMG + GEI L + +P+I ++ N+G +HL+ GS+
Sbjct: 133 NNAIGLPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQPDIALITNIGPAHLQGFGSI 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG-VRKVFFGWRRGCD 278
VA AK EIF V +LNA D L R+V FG + CD
Sbjct: 193 LRVAEAKAEIFSGLAQKGVAILNAADNHRDILEKASAQYRRVNFGLTQNCD 243
>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
sp. MED121]
gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
sp. MED121]
Length = 449
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 24/264 (9%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++EIA NG +L G ++ TDTR+ + + AI G FD H ++ L
Sbjct: 7 LSEIASICNGSLL--GEDRLVYSVKTDTRL--SLQGSLYLAIKGDSFDGHAYLETAL-KN 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + V+ Q ++ + V V+ +T + ++A Y R FSG LV +TGS GK+T
Sbjct: 62 GALAVLSQQ--DSQVRPLVLVD-----DTRQAYADIAHYLRQ-LFSGKLVAITGSNGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K ++ L V V ++ N NN++GV L+L+G+ + +AV+E G S GEI +LA+
Sbjct: 114 IKEWLSQCLAE-RVKVLKTEKNNNNQIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQ 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTV 262
+ P+I ++ N SH E GS+E +A+ KG + V +LN DDP L
Sbjct: 173 ITTPDIAIISNASGSHYEGFGSIEGIAKEKGALLTGLTAEGVAILNHDDPWFDYWVGLLD 232
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQV 286
R V FG+ G D LVA QV
Sbjct: 233 KRAC--VSFGFGSGAD--LVAKQV 252
>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis M23864:W1]
gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis M23864:W1]
Length = 451
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
+ D+R A K+ F G++ D H FI L G V G ++ + + +
Sbjct: 29 VTIDSR--AIEKDMLFIPFKGENVDGHRFIDQAL-KDGAVASFSEKGTELSEDVEGPIIW 85
Query: 106 VEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L ++A Y ++ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 86 VE-----DTLQALQDLAKAYLKH--VNPKVIAVTGSNGKTTTKDMIESVL-TTEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
LGS E +A+AK EI K + + D+PL+
Sbjct: 198 LGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLT 231
>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis SK135]
gi|417656926|ref|ZP_12306604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU028]
gi|417913854|ref|ZP_12557515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU109]
gi|418604109|ref|ZP_13167476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU041]
gi|418624593|ref|ZP_13187266.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU125]
gi|418663730|ref|ZP_13225239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU081]
gi|419771566|ref|ZP_14297617.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-K]
gi|420182054|ref|ZP_14688196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM049]
gi|420220942|ref|ZP_14725897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04008]
gi|420233549|ref|ZP_14738157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051668]
gi|421608790|ref|ZP_16050003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis AU12-03]
gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis SK135]
gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU028]
gi|341654312|gb|EGS78059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU109]
gi|374405905|gb|EHQ76816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU041]
gi|374411268|gb|EHQ81985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU081]
gi|374827155|gb|EHR91021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU125]
gi|383361064|gb|EID38446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-K]
gi|394250518|gb|EJD95700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM049]
gi|394285392|gb|EJE29471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04008]
gi|394299831|gb|EJE43359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051668]
gi|406655531|gb|EKC81957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis AU12-03]
Length = 451
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 121/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
Length = 493
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 138/272 (50%), Gaps = 22/272 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
WT EI ++ G + + D+R +A + F AI G + D H F + +
Sbjct: 7 WTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALG--ELFVAIKGNNHDGHAF-AEAVV 63
Query: 84 GKGCVGVIGNQ------VCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL 134
+G G++ N+ +C+ N D ++V+ NT +L ++A Y R +R +
Sbjct: 64 EQGIKGIVINKQKAGELLCDKLKNQDVFCIEVD-----NTTKALGDLAAYNR-TRADVSV 117
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
V +TGS GK++TK M A A+ S + + GN NN +G+ L+L+ + + AVLE+GM
Sbjct: 118 VAITGSNGKTSTKEM-ANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGM 176
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ GEI LA + +P+I ++ N+G HLE L ++E V AKGE+ K +LNADD
Sbjct: 177 NHPGEIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADD 236
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
V L ++FG ++ + +V
Sbjct: 237 ERVMCLARKTTRNVIYFGLSENALIKASSVEV 268
>gi|423716532|ref|ZP_17690722.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th307]
gi|395428606|gb|EJF94681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th307]
Length = 481
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 141/289 (48%), Gaps = 18/289 (6%)
Query: 24 SPIWTINEIAESVNGKI---LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +E+A+++ G++ L GI D+R K FF I G FD H+F
Sbjct: 2 SALWTSSELADALKGEVTGKLSEEFHGI-SIDSR--TAQKGDIFFCIKGDQFDGHDFAQK 58
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ V + V N K + + L L N+A AR R ++ +T
Sbjct: 59 AIENGASVLI----VHKNRTKSLYHLATPMIAVDDVLQGLQNLAKAAR-LRSKAKIIAIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK ++ +L ++G V + ++NN GV L+L + + D V E+GM+
Sbjct: 114 GSVGKTTTKELLRQSLATVG-KVHANPLSFNNHWGVPLTLARMPKETDYGVFEIGMNHAN 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP++ +V + HL SLED+A AK EIF+ + LNADD +
Sbjct: 173 EIRPLVKLVRPDVAIVTQIAAVHLGFFSSLEDIADAKAEIFEGMNDNGIVFLNADDAFFS 232
Query: 259 NL---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303
L + +GV+ ++ FG D RL + + +++++ E M
Sbjct: 233 YLRDKALLQGVQTIWCFGEAAFADYRLEKLHMMSDSSVMKILIRGEEAM 281
>gi|415886179|ref|ZP_11548002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus MGA3]
gi|387588832|gb|EIJ81153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus MGA3]
Length = 461
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVN 120
F G++ D H F+ + KG + + N D + VE +TL +L
Sbjct: 42 LFIPFKGENTDGHRFVEDAI-KKGAAAALWQKDVPNPPLDLPVLIVE-----DTLRALQE 95
Query: 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
+A RN + +VG+TGS GK+TTK M A L S+ V ++ GN+NN +G+ L+++
Sbjct: 96 LARSYRN-ELNIKIVGITGSNGKTTTKDMTANLL-SIKYKVQKTEGNFNNHIGLPLTVLS 153
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ ++AVLEMGMSG+GEI L ++ARP ++ N+G+SHL LGS E +A AK EI +
Sbjct: 154 LKPDTEMAVLEMGMSGRGEIEFLTKLARPNAVIITNIGESHLLDLGSREAIADAKLEIIK 213
Query: 241 ESKLGDVCVLNADDPLV 257
+ G + V + D+PL+
Sbjct: 214 GLEDGGLIVYHGDEPLL 230
>gi|418413339|ref|ZP_12986581.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus epidermidis BVS058A4]
gi|410879226|gb|EKS27077.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus epidermidis BVS058A4]
Length = 451
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 121/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGAII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 7002]
gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 7002]
Length = 445
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 121/210 (57%), Gaps = 13/210 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-VCNNWDKGFVQVE 107
+ TDTR L P F A+ G+ FD H+++ + + G + +I ++ + + + V
Sbjct: 28 VSTDTRDLQPGN--VFVALVGEKFDGHDYVD-QAHQAGAIALITSRPLETDLPQWIVN-- 82
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL + ++ + R + + ++G+TGSVGK++TK +IA L + G V ++ N
Sbjct: 83 -----DTLRAYQDLGAWWRQ-QVNIPVIGITGSVGKTSTKELIAGILGTQG-KVLKTEAN 135
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV +L+ + D AV+EM M G GEI LA +A+P I ++ NVG +H+ LGS
Sbjct: 136 FNNEIGVPKTLLNLTPDHDFAVIEMAMRGPGEIARLAEIAQPTIGIITNVGTAHIGRLGS 195
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ + V +LNAD+ L+
Sbjct: 196 REAIAKAKCELLEFMPKDSVAMLNADNELL 225
>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clavibacter michiganensis subsp. sepedonicus]
gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 484
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 14/260 (5%)
Query: 28 TINEIAESVNGKILKWGPP-------GIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
T+ EIAE+V+G++L G G++ TD+R++ P F A G+ D H F +P
Sbjct: 20 TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGG--IFVAKPGEETDGHLF-AP 76
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G ++ V D QV V+ L L + + +V VTGS
Sbjct: 77 WAVEAGAALLL---VERELDLPVPQVLVPDVVDALGRLAHEVVARVRALGELRMVAVTGS 133
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK+++ LE+ G V ++NN VG L+++ + R+ V EMG SG GEI
Sbjct: 134 NGKTTTKNLLHAILETQGETV-SPVASFNNEVGAPLTMLKVTRSTRFLVAEMGASGLGEI 192
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L RMA+P++ +VL VG +H G +E K E+ ++ D VLNADDP VA++
Sbjct: 193 TRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRVASM 252
Query: 261 TVPRGVRKVFFGWRRGCDVR 280
+ ++FG VR
Sbjct: 253 SDKTQAPVLWFGRDARAAVR 272
>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Gordonia
neofelifaecis NRRL B-59395]
gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Gordonia
neofelifaecis NRRL B-59395]
Length = 438
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 15/254 (5%)
Query: 30 NEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
++IA + G + GP + D+R P Q F I D H+FI +
Sbjct: 6 SQIAAATGGTL--HGPDATVDSASIDSRSARPG--QLFVPIVAAR-DGHDFIPSAVQAGA 60
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + VQV +T +L ++ + R + G +VGVTGSVGK++T
Sbjct: 61 PVYLTDRAPDPALGATAVQV-----ADTAEALADLGRFVR-AGLPGSVVGVTGSVGKTST 114
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K ++A L + S ++NN +G+ L+L+G + VLEMG G G I +L +
Sbjct: 115 KDLLAGVLGTT-FRTAASEKSFNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSI 173
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A P + V+ V HLE GSL+DVA+AKGE+ + + VLNAD P+VA +T
Sbjct: 174 ASPTVGVLTRVEAVHLEMFGSLDDVAQAKGELVEALPADGLAVLNADHPVVAAMTSRTSA 233
Query: 267 RKVFFGWRRGCDVR 280
R + +G G DVR
Sbjct: 234 RVLTYGVDPGADVR 247
>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanylligase [Thermocrinis
albus DSM 14484]
gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
DSM 14484]
Length = 441
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 115/200 (57%), Gaps = 9/200 (4%)
Query: 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNG 110
TD+R + + F A+ GQ D H F+ E + +G VGV+ + + F V +
Sbjct: 26 TDSRQV--EEGDVFVALKGQKHDGHSFVE-EAFRRGAVGVVVEREVPVKEGKFALVVED- 81
Query: 111 NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
+L +L ++A + RN+ F G +VG+ GS GK+TTK ++A L ++G V ++ N+N+
Sbjct: 82 ---SLKALRSIALFKRNN-FKGKVVGIAGSAGKTTTKELVAHLLSAVG-KVCKTPKNYNS 136
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
++GV LS+ D V+EMG S KG++ +L ++ P +RV+ ++G+ HLE+ G L+D
Sbjct: 137 QIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSIGEEHLETFGCLDD 196
Query: 231 VARAKGEIFQESKLGDVCVL 250
V GEI + + V VL
Sbjct: 197 VILGNGEILEGMREDHVAVL 216
>gi|358463496|ref|ZP_09173541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Frankia sp. CN3]
gi|357070146|gb|EHI79903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase, partial
[Frankia sp. CN3]
Length = 388
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 128/259 (49%), Gaps = 22/259 (8%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ E+A + G++ P + T D+R+ P F A+ G D H+F +
Sbjct: 5 TLAEVAAATGGRLDGGAEPDALVTSVVVDSRLAEPG--ALFVALPGDRADGHDFAAAAAA 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V V + LV +A + R+ + VL VTGS GK
Sbjct: 63 SGASAVLAARPV---------GVPAVLVADPAAGLVTLAGHVRDLAKAAVLA-VTGSSGK 112
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK ++A L LG + G++NN +G+ L+L+ ++ + A LEMG G G I L
Sbjct: 113 TTTKDLLADLLGVLGPTIAPP-GSFNNEIGLPLTLLRLEETTEYAALEMGARGIGHIAAL 171
Query: 204 ARMARPEIRVVLNVGDSHL-ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
+ARP + +VLNVG +H+ E +ARAKGE+ + + D VLNADDPLVA +
Sbjct: 172 CAVARPHVGLVLNVGSAHVGEYADGRAGIARAKGELAEAAT--DTVVLNADDPLVAAMR- 228
Query: 263 PRGV-RKVFFGWRRGCDVR 280
PR R V FG G DVR
Sbjct: 229 PRAAGRVVTFGRAAGADVR 247
>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 466
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 13/262 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+A + G+++ + I D+R + +K+ F I G++ DAH+F+ +Y
Sbjct: 12 TVKELAAATGGELISGNENEVFSNIVIDSRQV--DKDSLFVPIVGENNDAHKFLEA-VYN 68
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
GC I ++ K F V + L SL Y R + + LVGVTGSVGK+
Sbjct: 69 SGCKVAISSKKDIFLKKDFNIVLVDDTTKALQSL---GKYIR-KKLNLPLVGVTGSVGKT 124
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT+ M+ALAL L VF++ N+N++VGV ++L I + +I V+E+GMS E+ ++A
Sbjct: 125 TTREMVALALSDL--KVFKTPNNFNSQVGVPITLSRI-KDEEIGVIELGMSKFDEMEKIA 181
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ + +V N+G +H+E+L + E++ K I K V LNAD+ L+ N
Sbjct: 182 KIVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADNDLLNNSPKRE 241
Query: 265 GVRKVFFGWRRGCDVRLVAAQV 286
G+ FF + D A+ +
Sbjct: 242 GIIYKFFSAKGNKDCEYYASDI 263
>gi|421848811|ref|ZP_16281797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus NBRC 101655]
gi|371460331|dbj|GAB27000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus NBRC 101655]
Length = 461
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT E+ + G L + I DTR L P F A+ G + D H I+
Sbjct: 2 SLLWTREELETATGGTFLGNTSVSVTGISIDTRTLTPG--DLFIALKGDNSDGHAHIATA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L KG V+ + D + V +T+ L +A AR +RF G +V VTGSV
Sbjct: 60 LE-KGAAAVLAHSAEGFTDPRILLV-----ADTMLGLQKLAQAAR-ARFKGKVVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L L G+ + ++NN GV L+L + R + E+GM+ GEIL
Sbjct: 113 GKTTTKEMLRLCLAPSGLT-HAAEASYNNHWGVPLTLARLPREATFCISEIGMNHPGEIL 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
LA+M +P++ V+ +G +HL +GSL+ +A+ K I G + ++ D
Sbjct: 172 PLAKMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVPDD 223
>gi|402495051|ref|ZP_10841785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Aquimarina
agarilytica ZC1]
Length = 427
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 16/240 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR L N NQ FFA+ G FD +++ + C +I D + +
Sbjct: 16 VCTDTRSL--NNNQLFFALKGDSFDGNQYAVKAIEDGACFAIID-------DPKIIHSKA 66
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L +L +A + RN S ++ +TGS GK+TTK +I +++ N +YGN
Sbjct: 67 ILVENVLQTLQELANFHRN-YLSIPIIALTGSNGKTTTKELIHAVIKT-KFNCTATYGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + +I V+EMG + EI +L ++A+P + N+G +HLE GS
Sbjct: 125 NNHIGVPLTLLKMDTSTEIGVVEMGANHLYEIDQLCKVAQPNFGYITNIGKAHLEGFGSE 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGWRRGCD--VRLVAAQ 285
E++ K E+++ + N +D ++ + + ++F D ++ + AQ
Sbjct: 185 ENILLGKTELYRHLDTNKGIIFGNIEDAILTEKS--KKSNAIYFSNTSKSDYQIKFIEAQ 242
>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri L37603]
gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri L37603]
Length = 453
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 136/259 (52%), Gaps = 13/259 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NNWDKGFVQV 106
+ D+R A K+ F G++ D H F+ L V + + + V
Sbjct: 29 VTIDSR--AIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLPKDIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L + NV ++ G
Sbjct: 87 D-----DTLQALQDLA-KAYLKYVNPKVIAVTGSNGKTTTKDMIECVLNT-EFNVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCD-VRLVAA 284
S E +A+AK EI K + + D+PL+ ++ + + + G +G V V
Sbjct: 200 SREGIAQAKSEITIGLKSNGTFIYDGDEPLLKPHVEQIKEAKCISIGLEQGNSLVCSVND 259
Query: 285 QVANGGLGVQVVLEKEREM 303
QV G+ + ++E E+
Sbjct: 260 QVETEGIAFTINHQQEYEL 278
>gi|451949063|ref|YP_007469658.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfocapsa sulfexigens DSM 10523]
gi|451908411|gb|AGF80005.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfocapsa sulfexigens DSM 10523]
Length = 1025
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 124/238 (52%), Gaps = 20/238 (8%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGFVQ 105
G I TD+R + P F A+ G+ FD H+++ + G GC ++ ++ VQ
Sbjct: 571 GFIRTDSRTIQPA--DIFVALKGERFDGHDYVGQVVTAGAGCC-IMERLPESSLSVPVVQ 627
Query: 106 VEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTGSVGKSTTKSMIALAL-------- 154
V+ +T +L ++A Y R + ++ +TGS GK+T K M A
Sbjct: 628 VK-----DTTRALGDLARYRRACMKELSAPDVIAITGSSGKTTVKEMSAAIFKEKWPERA 682
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
++ V ++ GN+NN +G+ LSL+ + + +LEMGM+ GEI L +A P+I V
Sbjct: 683 DAPSARVLKTEGNFNNLIGLPLSLLPLSPKHKVVILEMGMNAPGEIARLTEIADPDIACV 742
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
LNV +HL+ LG +E VARAK E+FQ S G + V+N DDP V K+ FG
Sbjct: 743 LNVHGAHLQGLGDIEGVARAKAELFQGSGKGTILVVNGDDPRVVKAAESCSQEKIVFG 800
>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus pseudomycoides DSM 12442]
gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus pseudomycoides DSM 12442]
Length = 458
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQ 105
+ DTR + + I G FD H F+ + + V N N FV+
Sbjct: 30 VSIDTRKITTG--NLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNPPVNIPVIFVE 87
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL +L +A R+ + ++GVTGS GK++TK ++ +L + V ++
Sbjct: 88 -------DTLEALQTLAKSYRD-QLDVKVIGVTGSNGKTSTKDIVT-SLLATKFKVQKTE 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++ARP ++ N+G++HL L
Sbjct: 139 GNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
GS + +A AK EI + G V V N D+PL+ N
Sbjct: 199 GSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN 232
>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
sp. RQ2]
gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
sp. RQ2]
Length = 426
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 10/216 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F A+ G+ FD H+FI L G +I + + D+ F+ VE + V+TL L
Sbjct: 22 FVAVKGKKFDGHDFIDEALRN-GAYAIIAERKTVDSDRIFL-VESS--VDTLAKLAR--- 74
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ FSG +VGVTGS GK+TTK ++ L++ +VF++ GN N G+ LS++ +
Sbjct: 75 -EKLGNFSGTVVGVTGSSGKTTTKEILYNLLKN-KRSVFKTPGNMNTEYGLPLSILNDYK 132
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I VLEM S G+I L ++A P++ V+LNVG +HLE G+ E + K EI + SK
Sbjct: 133 GEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKMEIIKHSK 192
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
V DDP + VP + +FFG G V
Sbjct: 193 ENATAVTLFDDPDLRR-EVPCYRKTLFFGKEGGDSV 227
>gi|381199858|ref|ZP_09907004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
yanoikuyae XLDN2-5]
Length = 463
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
S +WT EIA++ G + + D+R + F A+ G+ D H+F+ + +
Sbjct: 2 SDLWTSAEIADATGGAVSAPFAVSGVAFDSREV--GAGDLFVAMKGETTDGHKFVD-KAF 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSV 141
+G G I V D V V +S V + R SR S ++GVTGSV
Sbjct: 59 AQGAAGAI---VSEPVDYPHVLVA--------DSAVALEALGRASRKRSSAKIIGVTGSV 107
Query: 142 GKSTTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ TK + ALE + V +S ++NN VGV LSL + R V EMGM+ GE+
Sbjct: 108 GKTGTKEALFHALERACPGGVHRSVKSYNNHVGVPLSLARMPRDAAYGVFEMGMNHAGEL 167
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R RP + +V + +H+E G+ E +A AK EIF+ + G V+ D P VA L
Sbjct: 168 AALTRQVRPNVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATL 227
>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock3-17]
gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock3-17]
Length = 458
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQ 105
+ DTR + + I G FD H F+ + + V N N FV+
Sbjct: 30 VSIDTRKITTG--NLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNPPVNIPVIFVE 87
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL +L +A R+ + ++GVTGS GK++TK ++ +L + V ++
Sbjct: 88 -------DTLEALQTLAKSYRD-QLDVKVIGVTGSNGKTSTKDIVT-SLLATKFKVQKTE 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++ARP ++ N+G++HL L
Sbjct: 139 GNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
GS + +A AK EI + G V V N D+PL+ N
Sbjct: 199 GSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN 232
>gi|372222989|ref|ZP_09501410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Mesoflavibacter zeaxanthinifaciens S86]
Length = 424
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 115/209 (55%), Gaps = 11/209 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN FFA+ G +F+ + F L +G I ++V + + V+
Sbjct: 16 VSTDTRKITPN--CLFFALKGPNFNGNTFAEQAL-AQGASFAIVDEVTYKTSEKTILVD- 71
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y RN + + V +TGS GK+TTK +I L S N ++GN
Sbjct: 72 ----DVLETLQKLAIYHRNYCKTKI-VSLTGSNGKTTTKELIHAVL-STTYNTIATHGNL 125
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + +I ++EMG + +GEI L+ +A+P+ + N G +HLE G +
Sbjct: 126 NNHIGVPLTLLRLTPETEIGIIEMGANHQGEIAFLSNLAQPDFGYITNFGKAHLEGFGGV 185
Query: 229 EDVARAKGEIFQESKLGDVCV-LNADDPL 256
E V + K E++ + D + LNADDP+
Sbjct: 186 EGVIKGKSELYNYLQEHDKHIFLNADDPI 214
>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 480
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 1 MSVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAK 56
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGV 137
V ++ ++V ++ G Q+ V+ L L R + F ++G+
Sbjct: 57 TAGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGL 111
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S
Sbjct: 112 TGSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHI 170
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 171 GEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHV 230
>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii Q321]
gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii Q321]
Length = 446
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ G +FDA++FI+ + +G VG + N+V + V
Sbjct: 25 VSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQGAVGAVVNRVVKTTLP-LICVS- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A Y R +V VTGS GK+TT++++A G NV S ++
Sbjct: 80 ----DTLEALGRLARYQREQIPIPAIV-VTGSCGKTTTRALLASVFRQCG-NVLASEKSF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + A+LE+G + GEI L +A+P + ++ N G HLE GSL
Sbjct: 134 NNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGCDV 279
E VA+AKGEIF+ V+N DD L R R + FG + DV
Sbjct: 194 EGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR--RIISFGINQPADV 245
>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock1-4]
gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock1-4]
Length = 461
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQ 105
+ DTR + + I G FD H F+ + + V N N FV+
Sbjct: 33 VSIDTRKITTG--NLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNPPVNIPVIFVE 90
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL +L +A R+ + ++GVTGS GK++TK ++ +L + V ++
Sbjct: 91 -------DTLEALQTLAKSYRD-QLDVKVIGVTGSNGKTSTKDIVT-SLLATKFKVQKTE 141
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++ARP ++ N+G++HL L
Sbjct: 142 GNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDL 201
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
GS + +A AK EI + G V V N D+PL+ N
Sbjct: 202 GSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN 235
>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga gingivalis ATCC 33624]
gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga gingivalis ATCC 33624]
Length = 421
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 10/206 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR K+ FF + G++FD + F+ P KG V+ + N + + V+
Sbjct: 12 VTTDTR--KELKDTLFFCLQGENFDGNTFV-PLALEKGAKWVVTSDPQWNSEPKAIVVK- 67
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A Y R + ++ +TGS GK+TTK +I L N ++ GN
Sbjct: 68 ----DTLWALQELATYHRQ-KLGTPIIALTGSNGKTTTKELIYSVLNQ-SFNALKTEGNL 121
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + DIA++EMG + GEI L ++A P+ + N G +HLE GS
Sbjct: 122 NNHLGVPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYITNFGRAHLEGFGSF 181
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
E V RAK E++Q K + C+ ++D
Sbjct: 182 EGVIRAKSELYQYLKKDNKCIFFSED 207
>gi|384086039|ref|ZP_09997214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 450
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 128/235 (54%), Gaps = 23/235 (9%)
Query: 27 WTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+++NEIA G++L G G I TD+R P + F A+TG+HFD ++F+ P
Sbjct: 4 YSLNEIARITGGQLLS-GSQGKDEIHGIATDSR--QPMIGKLFIALTGEHFDGNDFV-PA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV--NTLNSLVNMACYARNSRFSGVLVGVTG 139
+G V+ N+ QV+ G V +TL SL ++A + R RF+ ++ VTG
Sbjct: 60 ALAQGAAAVLSNR----------QVDAPGVVVKDTLQSLQSLAQHWRQ-RFNIPVLAVTG 108
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+T K ++ L G V + GN NN +GV L+L + AVLEMGM+ GE
Sbjct: 109 SCGKTTVKEVLTAILAESG-PVLATQGNQNNHIGVPLTLARLGVEHRYAVLEMGMNHPGE 167
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ L+ +A+P + ++ N G +HL LG++ VA AKGEI + +LN DD
Sbjct: 168 LALLSALAKPTLALINNAGPAHLAGLGNVAAVAAAKGEILSGLDNRGISILNGDD 222
>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Rickettsia
akari str. Hartford]
gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
akari str. Hartford]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 24/247 (9%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H++ + + KG VI ++ DK + + + +L
Sbjct: 34 KGDLFIALKGNR-DGHDY-ALDAIDKGAAAVIVSKQVEITDKDKILLVDD----CFEALK 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF GN+NN +G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQHDSL-VFAGRGNFNNYLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ ++ A+LE+GM+ KGEI EL ++ +P I V+ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDMEYAILELGMNHKGEIRELVQILKPNIAVITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ V+NAD ++ NL + R FG +LV + L
Sbjct: 205 FENFSKNDIAVINADTNCYSKILSILKNLYIDRVYN---FGILHNTHAQLVLYE----HL 257
Query: 292 GVQVVLE 298
G QV L+
Sbjct: 258 GAQVRLK 264
>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii Dugway 5J108-111]
gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii Dugway 5J108-111]
Length = 446
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ G +FDA++FI+ + +G VG + N+V + V
Sbjct: 25 VSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQGAVGAVVNRVVKTTLP-LICVS- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A Y R +V VTGS GK+TT++++A G NV S ++
Sbjct: 80 ----DTLEALGRLARYQREQIPIPAIV-VTGSCGKTTTRALLASVFRQCG-NVLASEKSF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + A+LE+G + GEI L +A+P + ++ N G HLE GSL
Sbjct: 134 NNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGCDV 279
E VA+AKGEIF+ V+N DD L R R + FG + DV
Sbjct: 194 EGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR--RIISFGINQPADV 245
>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii CbuG_Q212]
gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coxiella burnetii CbuG_Q212]
Length = 446
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 14/233 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ G +FDA++FI+ + +G VG + N+ + V
Sbjct: 25 VSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQGAVGAVVNRAVKTTLP-LICVS- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A Y R +V VTGS GK+TT++++A G NV S ++
Sbjct: 80 ----DTLEALGRLARYQREQIPIPAIV-VTGSCGKTTTRALLASVFRQCG-NVLASEKSF 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + AVLE+G + GEI L +A+P + ++ N G HLE GSL
Sbjct: 134 NNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP--RGVRKVFFGWRRGCDV 279
E VA+AKGEIF+ V+N DD A P R + FG + DV
Sbjct: 194 EGVAKAKGEIFEGLSSDGTAVINNDDHF-AEFWRPLAHSRRIISFGINQPADV 245
>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 8801]
gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
sp. PCC 8801]
Length = 457
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 117/209 (55%), Gaps = 7/209 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + P + F A+ G FD H+F + + ++ + + K Q++
Sbjct: 33 ITTDSRYINPG--EIFLALRGNTFDGHDFANIAVDKGAIALIVDHHISVKSTKQIPQIQV 90
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A + R + + ++ +TGSVGK+TTK +I+ L + G+ V ++ N+
Sbjct: 91 K---DTLLAYQQVAHWWR-EQLTIPVIAITGSVGKTTTKELISAVLSNYGI-VHKTKENY 145
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + R D AV+EMGM G EI L+++ARP I ++ NVG +H+ LGS
Sbjct: 146 NNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIGRLGSK 205
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E +A+AK E+ E + N D+ L+
Sbjct: 206 EAIAQAKCELLAEMPPDATAIFNHDNSLL 234
>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium dentium JCVIHMP022]
gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium dentium JCVIHMP022]
Length = 417
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 24/278 (8%)
Query: 21 PSNSPIWTINEIAESVNGKILKWGPPGII---------CTDTRILAPNKNQWFFAITGQH 71
P+ P+ + EI ++V+G+++ GI C+D+R + + F AI G+
Sbjct: 5 PTMMPMG-LAEIEQAVHGRLVAA--EGIASNGAMATSACSDSRQV--REGSVFVAIAGER 59
Query: 72 FDAHEFISPELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRF 130
D H+F+S ++ +G V ++ ++V D G Q+ + V L L R +
Sbjct: 60 VDGHDFVS-KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIG 115
Query: 131 SG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
S ++G+TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V
Sbjct: 116 SPFTVIGITGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLV 174
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
EMG + GEI L + P+I VVL VG +HL GS E +A+AK EI + G V V
Sbjct: 175 AEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTV 234
Query: 250 LNADDPLVANLTVPRGVRKVFFGW--RRGCDVRLVAAQ 285
LNA+D VA ++ ++FG RR D R+VAA+
Sbjct: 235 LNANDEHVAAMSGIAPGEVLWFGLPQRRTPD-RMVAAE 271
>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis M23590]
gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis M23590]
Length = 452
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 6/209 (2%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F G+H D H F+ + Q D +
Sbjct: 29 VTIDSRAVQPQ--MLFIPFKGEHVDGHHFVKQSIQDGAAAAFY--QTGQEIDSSLEEQPL 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A N V + VTGS GK+TTK MI L++ V ++ GN+
Sbjct: 85 IYVSDTLTALQQLAKAYLNYVQPKV-IAVTGSNGKTTTKDMIESVLKT-QFKVKKTQGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ +D DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LGS
Sbjct: 143 NNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSR 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
+A+AK EI K + + + D+PL+
Sbjct: 203 AGIAKAKSEIVTGLKDNGIFIYDGDEPLL 231
>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 454
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 10/224 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R F I G DAH+FI ++ K + + + ++ V+
Sbjct: 31 IFTDSR--KAEAGGLFVPIKGARVDAHDFIE-QVMEKAVLATLSEKDLGEKPFPYILVK- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L + N ++ GN+
Sbjct: 87 ----SSLIAVKDIAEFYLK-QLQIPVVGITGSVGKTSTKEVIASVL-AQKYNTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+S GE+ LA++ARP V+ N+G HLE L S
Sbjct: 141 NNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKIARPNTCVITNIGLCHLEFLKSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+ + +AK EIF + D +LN DD + + +G++ VFFG
Sbjct: 201 DGILKAKTEIFDYLQSDDHIILNGDDDKLVTVQETKGIKPVFFG 244
>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum ATCC 11170]
gi|386349002|ref|YP_006047250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum F11]
gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum ATCC 11170]
gi|346717438|gb|AEO47453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum F11]
Length = 488
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 14/246 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+C D+R + F A+ G+ D H + L ++ + VE
Sbjct: 39 VCIDSRAVV--AGDLFIALAGERTDGHAHVEAALTAGASAALVSRIPAGIATDRLLVVE- 95
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL L +A +R +RF+G LVGVTGS+GK+ TK M+ AL G V + GN
Sbjct: 96 ----DTLEGLWALARASR-ARFAGKLVGVTGSLGKTGTKEMLTQALGRFG-RVHATEGNL 149
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN G+ L+L + D+AV+E+GM+ GE+ LAR+ARP + ++ NV HLE S+
Sbjct: 150 NNHFGLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSV 209
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPL---VANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
E +A AK EI + + G VLN D+ + RG+ K FG G D R++
Sbjct: 210 EAIADAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDC 269
Query: 285 QV-ANG 289
V ANG
Sbjct: 270 AVDANG 275
>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
hansenii DSM 20583]
gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
hansenii DSM 20583]
Length = 454
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 10/224 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R F I G DAH+FI ++ K + + + ++ V+
Sbjct: 31 IFTDSR--KAEAGGLFVPIKGARVDAHDFIE-QVMEKAVLATLSEKDLGEKPFPYILVK- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L + N ++ GN+
Sbjct: 87 ----SSLIAVKDIAEFYLK-QLQIPVVGITGSVGKTSTKEVIASVL-AQKYNTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+S GE+ LA++ARP V+ N+G HLE L S
Sbjct: 141 NNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKIARPNTCVITNIGLCHLEFLKSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+ + +AK EIF + D +LN DD + + +G++ VFFG
Sbjct: 201 DGILKAKTEIFDYLQSDDHIILNGDDDKLVTVQETKGIKPVFFG 244
>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Synechococcus sp. CC9902]
gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. CC9902]
Length = 449
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 117/235 (49%), Gaps = 20/235 (8%)
Query: 35 SVNGKILKWGPP-----------GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+V I WG P G ICTD+R L +F + G++FD H F+ +L
Sbjct: 4 TVRQLIACWGAPLGPTPDPDMALGRICTDSRSL--QTGDFFVPLVGENFDGHSFLG-QLS 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + Q +W + V+ TL + +A R S LV VTGS G
Sbjct: 61 ALGAQAAVVEQ---SWSDPLPSDLLHWRVDDTLKAYQQLALLHRRS-LDQPLVAVTGSAG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ +I AL LG +V S GN NN +GV L+++ D V+EMGM G GEI
Sbjct: 117 KTTTRELIRAALAPLG-DVHCSEGNNNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIER 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
L+R P++ V+ N+G +H+ LGS E +A AK EI K V V+ A D L+
Sbjct: 176 LSRCTEPDVAVITNIGTAHIGRLGSREAIAAAKCEITAALKSDGVVVIPAGDALL 230
>gi|409098702|ref|ZP_11218726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
agri PB92]
Length = 433
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 128/234 (54%), Gaps = 12/234 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P FFA+ G HF+A+EF + L KG V+ ++ ++ + VE
Sbjct: 17 VSTDTRNITPGC--IFFALKGDHFNANEFAAQAL-EKGASFVVIDEEIYAINEKCLLVE- 72
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L N+A Y R + + ++G+TGS GK+T+K ++ L F ++GN
Sbjct: 73 ----DVLTALQNLARYHR-EQLNIPVIGLTGSNGKTTSKELVNAVLTE-RFKTFATFGNL 126
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV LS++ I V+IAV+EMG + + EI L +A+P ++ NVG +HL+ G
Sbjct: 127 NNHIGVPLSILSITHDVEIAVIEMGANHQKEIELLCSIAQPTHGIITNVGMAHLDGFGGF 186
Query: 229 EDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRK-VFFGWRRGCDVR 280
E V + K E++ K + +N D+ + ++ G+ K +++G G ++
Sbjct: 187 EGVKKGKAELYAYLKENNGYTFINRDNAHLMEMSATSGLNKLIYYGTENGNTIK 240
>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
degensii KC4]
gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
degensii KC4]
Length = 464
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 13/257 (5%)
Query: 32 IAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+AE + ++++ P I+ TDTR P + FFA+ G+ F+ H F++ E KG +
Sbjct: 9 LAEIMEARLIRGSPDRIVRAVFTDTREEIP-EGALFFALKGERFNGHHFVA-EAGAKGAL 66
Query: 89 GVIGNQVCNN-WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGVTGSVGKSTT 146
G + +++ F+ +E + L +L +A Y R R +G L+GVTGS GK+TT
Sbjct: 67 GAVVSRLPEQPLPPDFLILE---VTDVLAALQRLAHYVR--RATGPFLIGVTGSTGKTTT 121
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K ++A L ++ V + GN NN +GV L+L+ + + AV+EM M G+GEI L+ +
Sbjct: 122 KDLLAAVL-AVRHRVLATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALSAL 180
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A P V+ N+G++HLE LGS+ +ARAKGEI VL A+ P +
Sbjct: 181 AEPNAAVITNIGEAHLERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRCRG 240
Query: 267 RKVFFGWRRGCDVRLVA 283
+ ++FG VRL++
Sbjct: 241 KVIYFGESDKAQVRLLS 257
>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
silvestris BL2]
gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
silvestris BL2]
Length = 498
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 13/250 (5%)
Query: 11 ACTSKTTFRCPSNSPIWT----INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFA 66
A +S+T R P+WT + + ++G + G G+ DTR L P FFA
Sbjct: 9 ASSSETARRSEPQEPLWTGLGLVAPLEARISGGAPRRGATGV-SIDTRTLCPG--DLFFA 65
Query: 67 ITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYA 125
I+G + D H++++ L V+ + + G + V + + L L A
Sbjct: 66 ISGFNSDGHDYVAAALEKGALAAVVDEAHAESLARLGPLYVVRDDVLAALERL----GVA 121
Query: 126 RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185
+R + VTGSVGK++TK + LAL + G S ++NN GV L+L + R
Sbjct: 122 ARARTRARIAAVTGSVGKTSTKEALRLALSAAG-RTHASVASYNNHWGVPLTLARMPRQT 180
Query: 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245
+ V E+GM+ +GEI L RM RP + ++ V H+E+ +E +A AK EIF + G
Sbjct: 181 EFGVFEIGMNHQGEITPLTRMVRPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPG 240
Query: 246 DVCVLNADDP 255
V +L AD+P
Sbjct: 241 GVAILPADNP 250
>gi|420169263|ref|ZP_14675866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM087]
gi|394231726|gb|EJD77350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM087]
Length = 451
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKKNEYSEG-----N 79
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G + +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 80 QGPIIWVDDTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella suis bv. 4 str. 40]
gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella suis bv. 4 str. 40]
Length = 481
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 128/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M P + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVCPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRL 281
L GV + FG D RL
Sbjct: 241 QELAEKAGVEHIATFGENARADYRL 265
>gi|453329516|dbj|GAC88360.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconobacter
thailandicus NBRC 3255]
Length = 458
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL- 82
+ +WT E+ ++ G + I DTR L F A+ G+ D H I+ L
Sbjct: 2 TALWTSQELRDATQGTLAADVSVTGISIDTRTL--KLGDLFIALKGETSDGHAHIAQALE 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G CV V Q + D + V +T++ L + YAR+ RF G ++ VTGSVG
Sbjct: 60 AGAACVMVHDTQ--GSTDPRLLIV-----ADTMSGLEALGRYARD-RFDGKVIAVTGSVG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M+ AL +LG + ++NN GV L+L + R + E+GM+ GEI
Sbjct: 112 KTTTKDMLRTALSALG-PTHAAVASYNNHWGVPLTLARLPRDARFCISEVGMNHVGEIAP 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
LA RP++ ++ +G +HL +GSLE++AR K +F
Sbjct: 171 LAAQVRPDVAIITTIGTAHLGHMGSLEEIAREKATLF 207
>gi|407804255|ref|ZP_11151081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Alcanivorax sp. W11-5]
gi|407021784|gb|EKE33545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Alcanivorax sp. W11-5]
Length = 447
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 17/208 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L +F A+ G+HFDAH+++ ++ Q + +VQV+
Sbjct: 24 VSTDTRTL--QAGDFFVALRGEHFDAHDYLDQAAAAGARAALV-EQPTGAFAH-YVQVQ- 78
Query: 109 NGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+S + A +F+ + +GVTG+ GK+T K MIAL L G + G
Sbjct: 79 -------DSRRGLGLLAAGWADQFTALRIGVTGNAGKTTVKEMIALML---GGQTLATRG 128
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ ++ + AV+E+G + GEI + + +P+I ++ NV +HLE G
Sbjct: 129 NLNNDIGVPLTLLSLNDSHRFAVIELGANAPGEIRWTSSLVKPQIALITNVTGAHLEGFG 188
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD 254
+L+ +A AK EIF + G ++N+DD
Sbjct: 189 TLQGIADAKSEIFTGMRAGSTAIINSDD 216
>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
longum DJO10A]
gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum F8]
Length = 480
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 1 MSVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAK 56
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGV 137
V ++ ++V ++ G Q+ V+ L L R + F ++G+
Sbjct: 57 TAGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGL 111
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S
Sbjct: 112 TGSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHI 170
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 171 GEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHV 230
>gi|419848606|ref|ZP_14371700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 1-6B]
gi|386407366|gb|EIJ22343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 1-6B]
Length = 483
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 4 MSVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAK 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGV 137
V ++ ++V ++ G Q+ V+ L L R + F ++G+
Sbjct: 60 TAGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGL 114
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHI 173
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 174 GEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHV 233
>gi|420186292|ref|ZP_14692363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM040]
gi|394252509|gb|EJD97541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM040]
Length = 451
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 121/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGPTI 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTDGIFIYDGDEPLL 230
>gi|363897052|ref|ZP_09323595.1| hypothetical protein HMPREF9624_00157 [Oribacterium sp. ACB7]
gi|361959679|gb|EHL12955.1| hypothetical protein HMPREF9624_00157 [Oribacterium sp. ACB7]
Length = 444
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 4/214 (1%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H FI P G + + ++ K + V + NTL +L +
Sbjct: 25 LFVPIRGEKVDGHHFI-PMAISHGAKEIFTEEDFSDLGKQYPDVHFHRVENTLAALQDFG 83
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R R+ G L+GVTGSVGK+TT+ MIA AL S VFQ+ GN N+++GV ++L +
Sbjct: 84 AYCRR-RYRGKLIGVTGSVGKTTTREMIATALSS-EKTVFQTKGNANSQIGVPITLFHMA 141
Query: 183 RAV-DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE 241
+ +I+V+EMG+S GE+ +LARMA ++ V N+G +HLE++ + E+ K I
Sbjct: 142 KEEREISVIEMGVSIPGEMEKLARMASVDMAVFTNIGTAHLENMQTKENTCFEKMHILMG 201
Query: 242 SKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
L DP+++ L + F G +R
Sbjct: 202 ENRTVGLYLPKKDPILSVLDEKKIYEMGFLGGKR 235
>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 450
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 18/272 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICT-DTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+W ++EIAE+++ I + +I + + KN F + G FD H+FI E
Sbjct: 3 LW-LSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQ-EAIS 60
Query: 85 KGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G + I + N +++VE +TL ++ +A R R +++G+TGSVGK
Sbjct: 61 RGAISFITQKDVNTEKSCPYLKVE-----DTLKAMQILAKAYREKRKDLIVIGITGSVGK 115
Query: 144 STTKSMIALALESLGVNVFQSY---GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
+TTK + L N F+SY GN+NN +G+ S++ I V +A LEMGMS GEI
Sbjct: 116 TTTKEYVFNVLS----NKFRSYKNEGNFNNHIGLPYSILNIPDEVKVATLEMGMSNFGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNADDPLVAN 259
L+++A+P I ++ N+G +H+E+L + ++ AK EI Q+ D + ++N D+ ++ +
Sbjct: 172 SFLSKIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEI-QDGMPNDGILIINNDNDILYS 230
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
+ V G D R Q + G
Sbjct: 231 HRHELKRKVVTVGIENDADFRAKDIQKVDNGF 262
>gi|444920633|ref|ZP_21240473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Wohlfahrtiimonas chitiniclastica SH04]
gi|444508203|gb|ELV08375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Wohlfahrtiimonas chitiniclastica SH04]
Length = 449
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 115/230 (50%), Gaps = 11/230 (4%)
Query: 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNG 110
TDTR++ Q FFA G DAH F+ + KG +G + + + + + V+ +
Sbjct: 26 TDTRLIQAG--QLFFAWKGDKHDAHNFLDS-IEAKGAIGAVVERYTPSVNISQIVVKDS- 81
Query: 111 NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
+ + A + + G V +TGS GK+T K MIA L G + GN+NN
Sbjct: 82 -----QKALGILAKAWMADWQGTTVALTGSNGKTTLKEMIASILRGKGA-TLATEGNYNN 135
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
VG L+++ + + AVLEMG + EI L +A P++ ++ N G HLE GS+E
Sbjct: 136 HVGCPLTILKLTDQYEYAVLEMGANHFEEIRYLTHIACPDVAILNNAGPCHLEGFGSIEG 195
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
VARAKGEIF+ K G ++NADD +V FG R DV
Sbjct: 196 VARAKGEIFEGLKAGGTAIINADDDYADYWQSLNTEHRVLTFGIRNTADV 245
>gi|408356953|ref|YP_006845484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Amphibacillus xylanus NBRC 15112]
gi|407727724|dbj|BAM47722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Amphibacillus xylanus NBRC 15112]
Length = 449
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 134/242 (55%), Gaps = 26/242 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +K F + G+ FD H+FI + +G + W + + + +G
Sbjct: 27 VGTDTRQSLEDK--LFIPLVGESFDGHDFIDTAV-KQGAKAAL-------WQESYPRPKG 76
Query: 109 NGN----VNTLNSLVNMACYAR-NSRF-SGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ ++L+ + AR RF + +V +TGS GK+TTK ++ ++ + F
Sbjct: 77 IDPSFPLIRVADTLIGLQELARIYLRFVNPKVVAITGSNGKTTTKDLVY----AISRHYF 132
Query: 163 QSY---GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
+S+ GN+NN +G+ L+++ + A ++ +LEMGM+ GEI +L ++A+P+I ++ N+G+
Sbjct: 133 KSHCTKGNFNNHIGLPLTVLAMPEATEVLILEMGMNHFGEIEDLTKIAQPDIAIITNIGE 192
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
SH+E LGS E +A+AK E+ + K + + + D+PL+A P + V G+ R D
Sbjct: 193 SHIEHLGSREGIAKAKLEVTSQFKTKGLLIYDGDEPLLAR-EYPFEAKSV--GFNRSNDY 249
Query: 280 RL 281
+
Sbjct: 250 SI 251
>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chthoniobacter flavus Ellin428]
gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chthoniobacter flavus Ellin428]
Length = 455
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 18/242 (7%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T +IA+ G++ P G + CTD+R L F A+ G FD H FI+ E
Sbjct: 5 TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSL--KAGDLFVALRGDKFDGHTFIA-EASK 61
Query: 85 KGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+G G I + GF + V+ NTL +L + R S ++G+TGS G
Sbjct: 62 RGAAGAIVEEFPAELPPGFGVILVK-----NTLEALQRLGAEYRRS-LDIQVIGLTGSNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK + A L V ++ GN NN +G+ L+L+ + I V EMGM+ GEI
Sbjct: 116 KTSTKDLTASVLGE-NFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAP 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVAN 259
LA MA PE+ ++ N+G +H+E LGS E +A+ KG + + +L+A+D P +A
Sbjct: 175 LAAMAAPEVGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAA 234
Query: 260 LT 261
T
Sbjct: 235 RT 236
>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis HKU09-01]
gi|385783929|ref|YP_005760102.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus lugdunensis N920143]
gi|418415252|ref|ZP_12988458.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis HKU09-01]
gi|339894185|emb|CCB53450.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus lugdunensis N920143]
gi|410875259|gb|EKS23184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 452
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 6/209 (2%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F G+H D H F+ + Q D +
Sbjct: 29 VTIDSRAVQPQ--MLFIPFKGEHVDGHRFVKQSIQDGAAAAFY--QTGQEIDSSLEEQPL 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A N V + VTGS GK+TTK MI L++ V ++ GN+
Sbjct: 85 IYVSDTLTALQQLAKAYLNYVQPKV-IAVTGSNGKTTTKDMIESVLKT-QFKVKKTQGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ +D DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LGS
Sbjct: 143 NNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSR 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
+A+AK EI K + + + D+PL+
Sbjct: 203 AGIAKAKSEIVTGLKDNGIFIYDGDEPLL 231
>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[uncultured Flavobacteriia bacterium]
Length = 420
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV----GVIGNQVCNNWDKGFV 104
ICTD+R L Q FFA+ G +F+ ++F + L +I N NN D FV
Sbjct: 14 ICTDSRKLRSG--QIFFALKGDNFNGNQFANEALKNGASAIVLDEIIENLNYNNSDVFFV 71
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ N L L N A Y RN ++ ++G+TGS GK+T K ++ L S G + +
Sbjct: 72 K-------NVLTHLQNFATYHRN-KWGKTIIGITGSNGKTTVKELLFNVL-SQGYSTHAT 122
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +GV L+L+ I + DIA++EMG + GEI L ++ P+ + N G +HLE
Sbjct: 123 EGNYNNHIGVPLTLLNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYITNFGLAHLEG 182
Query: 225 LGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLV 257
G +E V + K E+++ K + +N +D +
Sbjct: 183 FGGIEGVIKGKSELYEHLDKNNSISFVNPNDSIA 216
>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 453
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 17/274 (6%)
Query: 29 INEIAESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+ E+AE + G + P I D+R L P F A+ G+ FD H F E G
Sbjct: 6 LKELAEVLQGHSIGDNVPITEIGIDSRTLKPGA--LFVALKGEQFDGHHFTG-EAQSHGA 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
VG++ + +++ +T +L +A + R + + LV +TGS GK++ K
Sbjct: 63 VGLLSECLLP------IKLPQIVVPDTRKALGQLAAWVRQ-QVNPRLVALTGSSGKTSVK 115
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M A L G +V + GN+NNR+GV L+L+ + D AVLE+G S G+I + A ++
Sbjct: 116 EMTAAILRQSG-HVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAALS 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA---DDPLVANLTVPR 264
RPE ++ N+ +HL GSL+ VA+AKGEI +++A D P +V R
Sbjct: 175 RPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHATSHDWPKWK--SVFR 232
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
G R FG +G +V A+ ++ L L
Sbjct: 233 GKRLWRFGLEKGKEVDFFASHLSKMPLATDFTLH 266
>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase
[Chromobacterium violaceum ATCC 12472]
gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase
[Chromobacterium violaceum ATCC 12472]
Length = 453
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 138/255 (54%), Gaps = 19/255 (7%)
Query: 26 IWTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ T+++ A G+++ G + TD+R+ P F A+ G+ FDAH+F++ E+
Sbjct: 1 MMTLSQAARFAQGRLVGADGEVSRVITDSRLAQPG--DLFVALKGERFDAHDFVA-EVVA 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+G + V + ++ + G+ +T +L +A R ++ + +GVTGS GK+
Sbjct: 58 RGAAAL----VRDGFELAGASLIQAGD-DTRLALGRLAAGWRETQ-PAIRIGVTGSNGKT 111
Query: 145 TTKSMIALALES-LGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
T K M+A L + G + V + GN+NN +G+ L+L+ + AV+EMGM+ GE+
Sbjct: 112 TVKEMLAAILRAHAGADAVLATAGNFNNDIGLPLTLLQLKPQHRYAVIEMGMNHHGELSY 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + RP++ +V N +H GS EDVARAK EIF+ V V+NADD ANL +
Sbjct: 172 LTGLTRPQVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLIDAGVAVVNADD---ANLPL 228
Query: 263 PRGV----RKVFFGW 273
R R++ FG
Sbjct: 229 FRAAAGSHRQLSFGL 243
>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JDM301]
gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JDM301]
Length = 483
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 15/238 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIA++V+G+++ T D+R P F AI G+ D H+F++
Sbjct: 4 MSVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKTA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTG 139
V ++ ++V ++ G Q+ V+ L L R + F ++G+TG
Sbjct: 62 EQGATVAIVDHEVESD---GLPQIVVKDTVDALGELARHNIVRRRELDGDFD--IIGLTG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S GE
Sbjct: 117 SVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
I L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHV 233
>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridiales bacterium 1_7_47_FAA]
gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridiales bacterium 1_7_47FAA]
Length = 487
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 135/274 (49%), Gaps = 31/274 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFI-----------------SPELYGKGCVGVI 91
I D+R + + F I G++ DAH F+ PE +
Sbjct: 31 ISLDSRKM--EGDDLFVPIIGENVDAHGFLCQAIVNGAAAVFTSRHRQPEEVRADIIRQC 88
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
G+ V +++V +T +L + Y R SR LVG+TGSVGK+TT+
Sbjct: 89 GDDVPRMEAAMSAAWIEV-----ADTKKALQDFGIYCR-SRQKLPLVGITGSVGKTTTRE 142
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
MIA AL S G V+++ GN N++VGV +++ I + I V+E+GMS GE+ +AR+AR
Sbjct: 143 MIAAAL-SAGFTVYKTPGNSNSQVGVPITIAAIPKQAQIGVIELGMSEPGEMTRIARIAR 201
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG-VR 267
+ V+ N+G +H+E LGS +++ + K I +LN DD L+ ++ +P G R
Sbjct: 202 VDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAENGSLILNGDDRLLRSV-IPEGNRR 260
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301
K+ +G C R + NG V E +R
Sbjct: 261 KILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKR 294
>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum NCC2705]
gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
DJO10A]
gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum ATCC 55813]
gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bifidobacterium sp. 12_1_47BFAA]
gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis 157F]
gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JCM 1217]
gi|419849029|ref|ZP_14372102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 35B]
gi|419851463|ref|ZP_14374392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 2-2B]
gi|419854566|ref|ZP_14377353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 44B]
gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum NCC2705]
gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
DJO10A]
gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JCM 1217]
gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis 157F]
gi|386413162|gb|EIJ27783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 35B]
gi|386413519|gb|EIJ28121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 2-2B]
gi|386417655|gb|EIJ32129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 44B]
Length = 483
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 4 MSVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAK 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGV 137
V ++ ++V ++ G Q+ V+ L L R + F ++G+
Sbjct: 60 TAGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGL 114
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S
Sbjct: 115 TGSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHI 173
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 174 GEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHV 233
>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobium sp. PCC 7001]
gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobium sp. PCC 7001]
Length = 428
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 9/201 (4%)
Query: 64 FFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLN 116
F A+ G+ FD H+F+ + G V + G+ + + + + G +T+
Sbjct: 2 FLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTVL 61
Query: 117 SLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
+ +A R F+G +V VTGS GK+TT+ +I L LG +V S GN NN +GV L
Sbjct: 62 AYQQLAAGWRRG-FAGPVVAVTGSAGKTTTRELIRAVLAPLG-SVVASRGNENNDLGVPL 119
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+L+ + A AV+EMGM G GEI L+R A+P++ V+ N+G +H+ LGS E +A+AK
Sbjct: 120 TLLRLTDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRLGSREAIAQAKC 179
Query: 237 EIFQESKLGDVCVLNADDPLV 257
EI + V V+ A DPL+
Sbjct: 180 EITTSLQPQGVVVIPAGDPLL 200
>gi|405354265|ref|ZP_11023645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Chondromyces apiculatus DSM 436]
gi|397092508|gb|EJJ23266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Myxococcus
sp. (contaminant ex DSM 436)]
Length = 423
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 6/218 (2%)
Query: 65 FAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
A+ G+ FDAH F+ G V+ + +G+V E +TL +L +
Sbjct: 1 MALVGERFDAHAFVDVAAKGGAAGAVVARGRPLPALPEGWVLYEVE---DTLRALGALGR 57
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ R RF + V GS GK+TTK M+A L++ G ++ GN NN +GV L+L ++
Sbjct: 58 HHRQ-RFRIPVCAVGGSNGKTTTKEMVAAILDTRG-PALKTEGNLNNEIGVPLTLFRLEP 115
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
AV+E+GM+ GEI LAR+ P+ V+ V HLE LGS+E VA A+GE+FQE
Sbjct: 116 RHVAAVIEVGMNQPGEIERLARVVLPDAGVITVVQPEHLEGLGSIEGVAAAEGELFQEMG 175
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
G V+N DD L+ G +++ FG DVRL
Sbjct: 176 HGTTIVVNVDDALIPAQAERSGAQRLTFGRAEHADVRL 213
>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium dentium Bd1]
gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium dentium Bd1]
Length = 499
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 24/278 (8%)
Query: 21 PSNSPIWTINEIAESVNGKILKWGPPGI---------ICTDTRILAPNKNQWFFAITGQH 71
P+ P+ + EI ++V+G+++ GI C+D+R + + F AI G+
Sbjct: 5 PTMMPMG-LAEIEQAVHGRLVT--AEGISSNGAMATSACSDSRQV--REGSVFVAIAGER 59
Query: 72 FDAHEFISPELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRF 130
D H+F+S ++ +G V ++ ++V D G Q+ + V L L R +
Sbjct: 60 VDGHDFVS-KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIG 115
Query: 131 SG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
S ++G+TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V
Sbjct: 116 SPFTVIGITGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLV 174
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
EMG + GEI L + P+I VVL VG +HL GS E +A+AK EI + G V V
Sbjct: 175 AEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTV 234
Query: 250 LNADDPLVANLTVPRGVRKVFFGW--RRGCDVRLVAAQ 285
LNA+D VA ++ ++FG RR D R+VAA+
Sbjct: 235 LNANDEHVAAMSGIAPGEVLWFGLPQRRTPD-RMVAAE 271
>gi|426401666|ref|YP_007020638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Endolissoclinum patella L2]
gi|425858334|gb|AFX99370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Candidatus Endolissoclinum patella L2]
Length = 464
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 16/263 (6%)
Query: 24 SPIWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +WT E+ G+I+ W GI +I F A+ G+ D H+F+
Sbjct: 2 TALWTRTAAVEATKGQIVGDNWSAYGISIDSRKI---KTGDIFIALPGKRVDGHQFVISA 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G + + + N D + + + L +L ++A +AR +R + +V VTGSV
Sbjct: 59 L-NLGASAALVSHIPNGLDNAPLLIVKD----VLKALKDLAHFAR-ARSNARIVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+ TK M+A L + G S GN NN +G +SL + D AV E+GM+ EI
Sbjct: 113 GKTGTKEMLARTLGADG-KTIASVGNLNNHIGAPMSLASLPADCDFAVFELGMNHSNEIR 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+M P + ++ NV H E S+ED+A +K EI + G + VLNAD+ L
Sbjct: 172 PLAQMIAPHVTIITNVELVHTEFFNSIEDIADSKAEIMEGLLPGGIAVLNADNSSFVRLR 231
Query: 262 VPRGV----RKVFFGWRRGCDVR 280
+ FG CD+R
Sbjct: 232 KRAQALCIDQIATFGRGAACDIR 254
>gi|343492093|ref|ZP_08730466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
nigripulchritudo ATCC 27043]
gi|342827433|gb|EGU61821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
nigripulchritudo ATCC 27043]
Length = 452
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 12/228 (5%)
Query: 27 WTINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++++E AE +NG++ + TDTR + ++ F AI G+ FDAH+F + K
Sbjct: 4 FSLSEAAEILNGQLHGQDRQIDTVSTDTRNI--EESALFIAIVGERFDAHDFCE-QAKEK 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G ++ V Q+ L SL + +++ F+ + +TGS GK+T
Sbjct: 61 GAAALL---VSRLLPVELPQIVVKDTTQALGSL-GAWVHKKSNSFT---IAMTGSCGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K M++ L G NV + GN+NN +GV L+L+ + A D +V+E+G + GEI R
Sbjct: 114 VKEMLSAILRQKG-NVLATLGNFNNDIGVPLTLLRSEAANDYSVIELGANHIGEIAYTTR 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+ +P I +V NV +HLE GS++ V +AKGEI+Q GDV V+N D
Sbjct: 173 LVKPNIALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLSQGDVAVVNLD 220
>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerolinea thermophila UNI-1]
gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerolinea thermophila UNI-1]
Length = 477
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 141/297 (47%), Gaps = 28/297 (9%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ ++ E++ GK + P D+R + P F A+ G D H+F+
Sbjct: 3 TLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGS--LFVALPGVRTDGHQFVGAAFQN 60
Query: 85 KGCVGVIGNQVCNNW---DKGFVQVEGNGNV---------------NTLNSLVNMACYAR 126
+ ++ + ++ D V E NTL +L +A Y R
Sbjct: 61 GAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWR 120
Query: 127 NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
R + ++G+TGSVGKSTTK +IA L S ++ GN NN +G+ L+L+ + + +
Sbjct: 121 R-RLNIRVIGITGSVGKSTTKELIAEVL-SQRYRTLKNPGNLNNEIGLPLTLLRLGKGHE 178
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
AVLEMG GEI L +A+P++ V+ N+G H E GS E +AR K E+ Q +G
Sbjct: 179 RAVLEMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGG 238
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKERE 302
+LN DDP V + + +++G + L A ++ GL G++ L RE
Sbjct: 239 YAILNHDDPWVRWMADKTQAQILYYGLT--PEAHLWADEIETMGLEGIRFRLHYRRE 293
>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii 269-3]
gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus jensenii 1153]
gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii 269-3]
gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus jensenii 1153]
gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
Length = 455
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 19/233 (8%)
Query: 31 EIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
EIA++++ I P I + D+R L N+N F + G+ D H+FI+ + G V
Sbjct: 7 EIAKALDTTIEGNSDPVISSVAFDSRKL--NENSLFVPLKGER-DGHDFINSAI-ANGAV 62
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ W+KG GN + +TL ++ +A Y N + + +VG+TGS GK+
Sbjct: 63 ATL-------WEKGHPNKPGNFPLIEVDDTLAAMQELAKYYLN-KVNPAVVGITGSNGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+A L S NV ++ N+NN +GV ++++ + +I VLEMGM G++ L+
Sbjct: 115 TTKDMVAAVL-SKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLS 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+ +P++ V+ +G++H+E GS + +A AK EI K + N D+PL+
Sbjct: 174 SLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLL 226
>gi|365132410|ref|ZP_09342176.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Subdoligranulum sp. 4_3_54A2FAA]
gi|363616916|gb|EHL68336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Subdoligranulum sp. 4_3_54A2FAA]
Length = 456
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 9/223 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R P F I G+ D H++ L V+ V + VQV
Sbjct: 25 VVTDSREAGPG--SLFVCIRGERVDGHDYALRALEAGAAGVVVQRPVPGVPPEKCVQVP- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L++++ + R + +S +L GVTGSVGK+TTK + G ++ GN
Sbjct: 82 ----DALDAMIRLGANYR-ALYSPLLAGVTGSVGKTTTKEFCYAVFSAFG-KTLRTQGNQ 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +L +D++V+ AV+EMGM G GEI +L A+P V+ +G SHLE LG+
Sbjct: 136 NNEIGMPNTLFRLDKSVEYAVVEMGMQGLGEIRKLTLAAKPAGAVITCIGRSHLEQLGTR 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
E++ RAK EI + G V+N DD + V + KV F
Sbjct: 196 ENILRAKLEICEGLPQGAPLVVNGDDDYLPGAAVRPDLEKVLF 238
>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
ATCC 367]
gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus brevis ATCC 367]
Length = 461
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 132/254 (51%), Gaps = 14/254 (5%)
Query: 29 INEIAESVNG--KILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIA +V +WG + + D+R L P F +TG+H D H+FI +
Sbjct: 5 LAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGG--LFIPLTGEH-DGHQFIQSAI-D 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G V + + + F ++ + ++ L +L N R +V VTGS GK+
Sbjct: 61 HGAVATLWARDLASAPADFPVIQVDDSLKALQTLAQYYLSKINPR----VVAVTGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK MIA L S NV +++ N+NN +GV ++++ ++ ++ V+EMGM G++ L+
Sbjct: 117 TTKDMIAAVL-STQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLS 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ P++ ++ +G++H+E G+ + +A AK EI V V N D+PL+
Sbjct: 176 QLVSPDLALITMIGEAHIEFFGTRDKIADAKMEITHGLSDDGVFVFNGDEPLLRERATEL 235
Query: 265 GVRKVFFGWRRGCD 278
R+V FG ++G D
Sbjct: 236 TQRQVTFG-QQGTD 248
>gi|418635605|ref|ZP_13197979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis VCU139]
gi|374841710|gb|EHS05167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis VCU139]
Length = 452
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV--IGNQVCNNWDKG-FVQ 105
+ D+R + P F G+H D H F+ + G ++ ++ ++ +
Sbjct: 29 VTIDSRAVQPQ--MLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTGQEIGSSLEEQPLIY 86
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V +TL +L +A N V + VTGS GK+TTK MI L++ V ++
Sbjct: 87 VS-----DTLTALQQLAKAYLNYVQPKV-IAVTGSNGKTTTKDMIESVLKT-QFKVKKTQ 139
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ L
Sbjct: 140 GNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDL 199
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GS +A+AK EI K + + + D+PL+
Sbjct: 200 GSRAGIAKAKSEIVTGLKDNGIFIYDGDEPLL 231
>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalivibrio sp. K90mix]
gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalivibrio sp. K90mix]
Length = 457
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 120/234 (51%), Gaps = 17/234 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T E+A++V G++ + + TDTR P + F A+ G FDAHE ++ +L
Sbjct: 5 TGQELADAVRGRLENGDGERVFEGVFTDTR--QPLEGGLFVALRGPRFDAHEHVAADLPA 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ V D QV +T +L +A + R R ++ +TGS GK+
Sbjct: 63 AVLL------VERVLDVPHPQVV---VADTGEALGRLAQHWRR-RSRARVIALTGSNGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+ LE +G +V + GN NN +GV L+L+ + D AV+EMG + GEI +A
Sbjct: 113 TTKEMLRCILEGVG-SVHATQGNLNNEIGVPLTLLAMPEDTDYAVIEMGANHAGEIGRMA 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLV 257
R P + ++ N G +HLE GSLE VA AK EIF G V+N DDP
Sbjct: 172 RWTEPMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFA 225
>gi|389721918|ref|ZP_10188623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 115]
gi|388445384|gb|EIM01462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 115]
Length = 456
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 124/247 (50%), Gaps = 13/247 (5%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G++ DTR L P F A G+H D H+++ ++ +V N + V
Sbjct: 24 GVVAIDTRKLRPG--DLFAAFKGEHVDGHDYLDEAARRGASAALVTRKVDNPLPQVLV-- 79
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
G++ +L ++A R R + V +G+TGS GK+T K++ A L G S G
Sbjct: 80 ---GDMEA--ALGDLASAVRAQRGARV-IGITGSNGKTTVKTLTAAILSRHGRTHVNS-G 132
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
++NN +G+ L+L+ + + AVLEMG G+I LA +ARP+I +V + +HLE +G
Sbjct: 133 SFNNEIGLPLTLLSMPVDAEYAVLEMGAGKPGDIAYLAAIARPDIGLVNLIAPAHLERMG 192
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRL-VAA 284
S+E VA KG ++Q V ++NADD G R+ FG DV +
Sbjct: 193 SVEGVAETKGALYQALPADGVAIINADDAFAGFFAGLAGSRRTLRFGLEHKADVGADIVE 252
Query: 285 QVANGGL 291
Q A+G L
Sbjct: 253 QRADGSL 259
>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium HdN1]
gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium HdN1]
Length = 974
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 12/244 (4%)
Query: 28 TINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
T+ +AE + G++ P + TDTR L FFA+ G+ FDAH+F+
Sbjct: 520 TLASLAERLGGELRGEDLPFAGVSTDTRAL--KSMDVFFALVGEKFDAHDFLQQAKVAGA 577
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
C V+ V + D ++VE +T +L A R+ RF +V VTGS GK++
Sbjct: 578 CGAVVSRWV--DVDLPQIKVE-----DTRLALGAWAGMFRD-RFHPRVVAVTGSSGKTSV 629
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K M+A G V + GN NN +GV L+L+ +D + AV+E+G + GEI +
Sbjct: 630 KEMLAAIFSEEG-RVLATSGNLNNDIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGL 688
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
RP+ ++ NVG++HLE GS ++A+AK EI+ V V+N DD +
Sbjct: 689 VRPDAALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNAS 748
Query: 267 RKVF 270
R V
Sbjct: 749 RNVL 752
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 29/260 (11%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLV 119
F A+ G H D ++I L +G V+ ++V + ++ V +GNV + + L
Sbjct: 41 FVALKGHHVDGRDYIKDALK-RGASAVLADRVGVSAEQ---VVNAHGNVIWRDDLRSELG 96
Query: 120 NMAC--YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ----SYGNWNNRVG 173
++A Y S+ V + VTG+ GK+T ++ L LG + YG+ ++ +
Sbjct: 97 DIASRFYDEPSKQMRV-IAVTGTNGKTTVSHLLVRLLMRLGESAKTIGTLGYGHPDHLIP 155
Query: 174 VALSLIGIDRAVDI--AVLEMG-----MSGKGEILELARMARPEIR--VVLNVGDSHLES 224
+A + + +I A E G M L+ R+ EI V N+ HL+
Sbjct: 156 LANTTPDAIQLHEILAACREDGARFVAMEASSHGLDQGRLGCVEISTAVFTNITRDHLDY 215
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGC--DVR 280
+++ AK ++ L ++ VLNADD VA + GV+ V+F R DV
Sbjct: 216 HQTMQAYWEAKAKLASWHGLRNL-VLNADDAGVAKMAAVAEHGVKIVWFSLRADANVDVA 274
Query: 281 LVAAQVANGGLGVQVVLEKE 300
LV G+ + + ++ E
Sbjct: 275 LVRCLYHPRGMSLDIRVKDE 294
>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
gi|169291945|gb|EDS74078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium spiroforme DSM 1552]
Length = 450
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 138/255 (54%), Gaps = 15/255 (5%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++EI E+ GK++ I D+R ++P + I G+ FD H+FI +
Sbjct: 3 VSEIVEATGGKLICGNSNQEITGFSQDSRKVSPG--MMYIPIIGERFDGHDFI-KNAFEN 59
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G VI + ++ + ++V+ +TL +L +MA Y R R V VG+TGSVGK++
Sbjct: 60 GASAVISGRDIDDSEHIIIKVK-----DTLKALQDMAHYLRKHRKVKV-VGITGSVGKTS 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
T+ M+ ++ ++ GN+NN +G+ L+++ + + + VLEMGM+ E+ EL+
Sbjct: 114 TRDMVYSVIKQ-QYKTLKTEGNYNNAIGLPLTILRL-KDEQVMVLEMGMNHLKEMEELSM 171
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A P+I + NVG +H+ LGS E++ +AK EI + V+N D+ +++ + V R
Sbjct: 172 IACPDISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTVEVGR- 230
Query: 266 VRKVFFGWRRGCDVR 280
+ + G G D +
Sbjct: 231 LNLIRVGIDNGVDFK 245
>gi|384201238|ref|YP_005586985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum KACC 91563]
gi|338754245|gb|AEI97234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum KACC 91563]
Length = 483
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 15/238 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIA++V+G+++ T D+R P F AI G+ D H+F++
Sbjct: 4 MSVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKTA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTG 139
V ++ ++V ++ G Q+ V+ L L R + F ++G+TG
Sbjct: 62 GQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGLTG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S GE
Sbjct: 117 SVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
I L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHV 233
>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
[Brevibacillus brevis NBRC 100599]
gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
ligase [Brevibacillus brevis NBRC 100599]
Length = 460
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 16/230 (6%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ- 94
IL G PG+ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 ILIAGSPGLALSSVHFDTREL--TVGSLFVALTGGARDGHDFLLQAAEQGAVAALVSNQE 73
Query: 95 -VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALA 153
+ + F + N +TL +A R S FS + +TGS+GK+T K ++A
Sbjct: 74 KIPGDLPNDFGLILVN---DTLRGFQKLAAAYRKS-FSFPRIAITGSIGKTTVKDIVAHV 129
Query: 154 LESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRV 213
L S V+++Y N+NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V
Sbjct: 130 LASRS-PVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLASLVQPDISV 188
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
+ +G+SH+E G+ E +A AK E+ + L + +LN D L+A+L
Sbjct: 189 ITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAHL 238
>gi|418463103|ref|ZP_13034129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharomonospora azurea SZMC 14600]
gi|359734600|gb|EHK83574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharomonospora azurea SZMC 14600]
Length = 487
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 135/274 (49%), Gaps = 25/274 (9%)
Query: 28 TINEIAESVNGKILKWGPP----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIAE V G++ + G + D+R L + F A+ G+ D H+F + +
Sbjct: 5 TLAEIAEVVGGRLHRADGSERVTGSVEFDSRKL--TEGGLFVALPGERADGHDFAASAVE 62
Query: 84 GKGCVGVIGNQVCN------------NWDKGFVQVEGNGNVNTLNSLVNMACYARN--SR 129
G VGV+ + + + V + G+ + + L + AR+ +R
Sbjct: 63 C-GAVGVLAAREVDAPAVIVPPLPPGRAHERSVALTGDTDGSGAAVLAALGALARHVVTR 121
Query: 130 FSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
S +VGVTGS GK++TK +IA LE LG V G++NN +G + + DR
Sbjct: 122 LSESGLAVVGVTGSSGKTSTKDVIAQLLEPLGPTVAPP-GSFNNELGHPWTALRADRETR 180
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
VLE+ G G I ELA +A P I VVLNVG +H+ GS E +A+ KGE+ +
Sbjct: 181 HLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHVGEFGSQEGIAQTKGELVEALPADG 240
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADDPLVA + R V G DVR
Sbjct: 241 VAVLNADDPLVAAMASRTRARVVRVGEADDADVR 274
>gi|386083818|ref|YP_006000100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 465
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 119/244 (48%), Gaps = 16/244 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L + + A+ GQ FDAH F + E +G GV+ + V D V V
Sbjct: 24 IGHDTRAL--DVGVLYVALRGQRFDAHLFCA-EAVARGAAGVLVDHVLPELDVPQVVV-- 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN----VFQS 164
+T +L +A + R S VL +TGS GK++ K+M+ LE V+ S
Sbjct: 79 ---ADTERALAAIASALQRDRTSFVL-ALTGSNGKTSVKAMLVSILEHAAAQSSTVVYAS 134
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++I D AV EMG G+I L + P++ +V N+ +HLE
Sbjct: 135 SGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLER 194
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVFFGWRRGCDVRL 281
+GSL VAR KGEI+ + G V+N DD VP G + FG + DV
Sbjct: 195 MGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGCAVLRFGLQATADVTA 254
Query: 282 VAAQ 285
+ Q
Sbjct: 255 YSLQ 258
>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 456
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 15/237 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK---GFVQ 105
+ TD+R +A + F A+ G++FD H++++ ++ VQ
Sbjct: 24 VSTDSRSIAAG--ELFVALRGENFDGHDYVAAAKARGAAAAIVATDAAEGLQALSLPLVQ 81
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES-LGVNVFQS 164
V T SL +A R RF+ L+ VTGS GK+TTK MIA L++ G V +
Sbjct: 82 V-----AETRLSLGALAADWRG-RFALPLLAVTGSNGKTTTKEMIASILKAAYGEAVLAT 135
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ ++ A++E+GM+ GEI LA +ARP + +V N +HL
Sbjct: 136 QGNFNNDIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIARPTVALVTNAQRAHLAG 195
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDV 279
+GSLE +A KG I+ V V NADDP A L + RG+R + FG+ + DV
Sbjct: 196 MGSLEAIAAEKGSIYTGLDETGVAVFNADDPW-AKLWRSQCRGLRMMTFGFEQAADV 251
>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Jannaschia sp. CCS1]
gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Jannaschia sp. CCS1]
Length = 473
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 125/260 (48%), Gaps = 15/260 (5%)
Query: 26 IWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT + A + G W G+ DTR + P F D HEF++ + +
Sbjct: 3 LWTSADAASATGGTSQGTWTATGV-SIDTRTIEPGD---LFVALAAARDGHEFVA-QAFQ 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG + N V + D V + L +L + AR +R ++ +TGSVGK+
Sbjct: 58 KGASAALVNHVPDGMDAAKCLVVDD----VLAALERLGTAAR-TRTQAKVIAITGSVGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
T K M+ AL G + + ++NN GV L+L + D AV+E+GMS GEI L+
Sbjct: 113 TVKDMLKQALSGQG-KIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLS 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD---DPLVANLT 261
RMARP + ++ + +HLE+ G +E +A K IF+ + V ++ D P++A
Sbjct: 172 RMARPHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAA 231
Query: 262 VPRGVRKVFFGWRRGCDVRL 281
V V FG G D+RL
Sbjct: 232 VAHAAEVVTFGEAEGADLRL 251
>gi|390943189|ref|YP_006406950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Belliella baltica DSM 15883]
gi|390416617|gb|AFL84195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Belliella baltica DSM 15883]
Length = 432
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 121/214 (56%), Gaps = 11/214 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
+ TDTR + ++ FFA+ G +F+A+ F + L G V V +V N D + VE
Sbjct: 16 VSTDTRKI--DQGNIFFALKGPNFNANTFAAQALEIGAALVVVDEAEVIPNNDTRYFLVE 73
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L +L +A + R + S ++G+TGS GK+T+K ++ L+ + GN
Sbjct: 74 -----DVLTALQQLALHHRR-QLSIPIIGLTGSNGKTTSKELLHAVLKQ-KFKTSATVGN 126
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ I++ +IA++EMG + +G+I EL +A P + N+G +HLE +G
Sbjct: 127 LNNHIGVPLTLLAIEKDTEIAIIEMGANKQGDIKELCDIAEPTHGFITNIGKAHLEGMGG 186
Query: 228 LEDVARAKGEIFQESKLGDVCV-LNADDPLVANL 260
E V + K E+FQ + V +N+ DP+++N+
Sbjct: 187 PEGVLKTKTELFQHLRAHKGTVFINSQDPILSNM 220
>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinobacillus ureae ATCC 25976]
gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinobacillus ureae ATCC 25976]
Length = 464
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
T NEIA+ ++G++ G + T T +N FFA+ G+HFDAH +++ + +GC
Sbjct: 5 TTNEIADILSGQLSGNGGVMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANAV-EQGC 63
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V V+ + C + V +T +L +A + + ++ + V +TGS GK+T K
Sbjct: 64 VAVVVERECE------ISVPQIVVQDTRLALGELAKWLK-AKLNPKTVAMTGSSGKTTVK 116
Query: 148 SMIALALESLGV---NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
M A L+ + V V ++GN NN +GV ++L+ + AV+E+G + GEI
Sbjct: 117 EMTAKILQKMTVCEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTT 176
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLN 251
+ +P+ +V NV +HLE GSLE VA+AKGEI++ K G ++N
Sbjct: 177 AITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVN 223
>gi|381162554|ref|ZP_09871784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharomonospora azurea NA-128]
gi|379254459|gb|EHY88385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharomonospora azurea NA-128]
Length = 487
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 135/274 (49%), Gaps = 25/274 (9%)
Query: 28 TINEIAESVNGKILKWGPP----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIAE V G++ + G + D+R L + F A+ G+ D H+F + +
Sbjct: 5 TLAEIAEVVGGRLHRADGSERVTGSVEFDSRKL--TEGGLFVALPGERADGHDFAASAVE 62
Query: 84 GKGCVGVIGNQVCN------------NWDKGFVQVEGNGNVNTLNSLVNMACYARN--SR 129
G VGV+ + + + V + G+ + + L + AR+ +R
Sbjct: 63 -CGAVGVLAAREVDAPAVIVPPLPPGGAHERSVALTGDTDGSGAAVLAALGALARHVVTR 121
Query: 130 FSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
S +VGVTGS GK++TK +IA LE LG V G++NN +G + + DR
Sbjct: 122 LSESGLAVVGVTGSSGKTSTKDVIAQLLEPLGPTVAPP-GSFNNELGHPWTALRADRETR 180
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
VLE+ G G I ELA +A P I VVLNVG +H+ GS E +A+ KGE+ +
Sbjct: 181 HLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHVGEFGSQEGIAQTKGELVEALPADG 240
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
V VLNADDPLVA + R V G DVR
Sbjct: 241 VAVLNADDPLVAAMASRTRARVVRVGEADDADVR 274
>gi|359448058|ref|ZP_09237611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20480]
gi|358046105|dbj|GAA73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20480]
Length = 269
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + + F A+ G +FD H+FI+ E KG +GVI + + F+
Sbjct: 24 INTDTRTVC--EGEVFLALKGPNFDGHKFIA-EAKQKGAIGVIVDHKVDVDIAQFI---- 76
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A ++ + + +TGSVGK+T K M A L G +V + GN+
Sbjct: 77 ---VNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHG-DVLATKGNF 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI MA+P++ VV NV +HLE GSL
Sbjct: 133 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSL 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
VA+AKGEIF K V ++N D
Sbjct: 193 MGVAKAKGEIFDGLKENGVAIINCD 217
>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
gi|383752550|ref|YP_005427650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia typhi str. TH1527]
gi|383843385|ref|YP_005423888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia typhi str. B9991CWPP]
gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl ligase [Rickettsia typhi]
gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
gi|380759193|gb|AFE54428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia typhi str. TH1527]
gi|380760032|gb|AFE55266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia typhi str. B9991CWPP]
Length = 448
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 31 EIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV 90
EI+ SVN +++ + K F A+ G D H++I + KG V
Sbjct: 15 EISHSVNCNAVQFNSKDV----------KKGDLFIALQGNR-DGHDYIQDAI-DKGATAV 62
Query: 91 IGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR-NSRFSGVLVGVTGSVGKSTTKSM 149
I ++ DK + + + + N+L MA Y R NS+ + +TGSVGK++TK
Sbjct: 63 IVSKQVEINDKDKIILVND----SFNALQKMALYKRKNSK--AKFIAITGSVGKTSTKEA 116
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
+ + L+ + VF S GN+NN +G+ ++L + + A+ E+GM+ KGEI EL ++ +P
Sbjct: 117 LKILLQHDFI-VFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHKGEISELVQILKP 175
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
I ++ N+ ++HLE S+E++A AK EIF+ D+ ++NA +
Sbjct: 176 NIAMISNISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASN 220
>gi|417912446|ref|ZP_12556138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU105]
gi|418622325|ref|ZP_13185077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU123]
gi|420186915|ref|ZP_14692939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM039]
gi|341650658|gb|EGS74474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU105]
gi|374826919|gb|EHR90794.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU123]
gi|394256881|gb|EJE01805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM039]
Length = 451
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDITVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Xylella
fastidiosa Temecula1]
gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
fastidiosa M23]
gi|417559107|ref|ZP_12210061.1| UDP-N-acetylmuramyl pentapeptide synthase [Xylella fastidiosa
EB92.1]
gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
fastidiosa Temecula1]
gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
fastidiosa M23]
gi|338178375|gb|EGO81366.1| UDP-N-acetylmuramyl pentapeptide synthase [Xylella fastidiosa
EB92.1]
Length = 468
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 119/244 (48%), Gaps = 16/244 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L + + A+ GQ FDAH F + E +G GV+ + V D V V
Sbjct: 27 IGHDTRAL--DVGVLYVALRGQRFDAHLFCA-EAVARGAAGVLVDHVLPELDVPQVVV-- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN----VFQS 164
+T +L +A + R S VL +TGS GK++ K+M+ LE V+ S
Sbjct: 82 ---ADTERALAAIASALQRDRTSFVL-ALTGSNGKTSVKAMLVSILEHAAAQSSTVVYAS 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++I D AV EMG G+I L + P++ +V N+ +HLE
Sbjct: 138 SGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLER 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVFFGWRRGCDVRL 281
+GSL VAR KGEI+ + G V+N DD VP G + FG + DV
Sbjct: 198 MGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGCAVLRFGLQATADVTA 257
Query: 282 VAAQ 285
+ Q
Sbjct: 258 YSLQ 261
>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
fastidiosa Dixon]
gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Xylella
fastidiosa M12]
gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
fastidiosa Dixon]
gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
fastidiosa Ann-1]
gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
fastidiosa M12]
Length = 468
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 119/244 (48%), Gaps = 16/244 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L + + A+ GQ FDAH F + E +G GV+ + V D V V
Sbjct: 27 IGHDTRAL--DVGVLYVALRGQRFDAHLFCA-EAVARGAAGVLVDHVLPELDVPQVVV-- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN----VFQS 164
+T +L +A + R S VL +TGS GK++ K+M+ LE V+ S
Sbjct: 82 ---ADTERALAAIASALQRDRTSFVL-ALTGSNGKTSVKAMLVSILEHAAAQSSTVVYAS 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++I D AV EMG G+I L + P++ +V N+ +HLE
Sbjct: 138 SGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLER 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVFFGWRRGCDVRL 281
+GSL VAR KGEI+ + G V+N DD VP G + FG + DV
Sbjct: 198 MGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGCAVLRFGLQATADVTA 257
Query: 282 VAAQ 285
+ Q
Sbjct: 258 YSLQ 261
>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 483
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 25/287 (8%)
Query: 23 NSPIWTINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+P+WT++EI +G + + P I D+R+ K F A+ G D H+F+
Sbjct: 2 TAPLWTVDEICTHTSGIMAETAMVPAPIDHITMDSRMC--RKGSLFVALPGAQADGHDFL 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ ++ + +++ + L +L +A RN RF G ++ +T
Sbjct: 60 AKAANADASAALVTTPDIS------IELAQIIVPDCLAALTALAVAGRN-RFKGAMIAIT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSY---GNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GSVGK+ TK M+A L + G QS+ GN+NN +G+ LSL + A+ E+GM+
Sbjct: 113 GSVGKTGTKEMLAHLLRACG----QSHANEGNFNNHIGLPLSLAALPAGSQFAIQEIGMN 168
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI +L R+ARP+I ++ + H S++ +A AK EIF E G VLN DDP
Sbjct: 169 HAGEIAKLTRIARPDIAMITRIAAVHSGHFESIDAIANAKAEIF-EGMHGGTAVLNIDDP 227
Query: 256 LVANLTVP---RGV-RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+L+ G+ R V FG + L++++ N G+ ++ L
Sbjct: 228 FFPHLSQAAKSAGISRIVTFGSHSDAEFCLLSSRQDNDGMKIEADLS 274
>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
orientalis CIP 102891 = ATCC 33934]
gi|417953485|ref|ZP_12596530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
orientalis CIP 102891 = ATCC 33934]
gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
orientalis CIP 102891 = ATCC 33934]
gi|342817086|gb|EGU51973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
orientalis CIP 102891 = ATCC 33934]
Length = 452
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 16/228 (7%)
Query: 29 INEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+++IAE+++ +++ G +I TDTR + + F A+ G+ FDAH F +
Sbjct: 6 LSQIAEALDAELI--GNDRVINSVSTDTRNI--EQGALFVALVGERFDAHHFTHQAVDSG 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ V + + V+ + + L +LV+ C V +TGS GK+T
Sbjct: 62 AGALLVSKPVSGDVPQLVVK-DTKLALGQLGALVHQTCLTPT-------VAITGSCGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K MIA +E G +F + GN+NN +GV L+L+ D+AV+E+G + GEI R
Sbjct: 114 VKEMIASIMEQKGQVLF-TAGNFNNEIGVPLTLLRSTPEDDVAVIELGANHIGEIAYTTR 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+ +P++ +V NV +HLE GS++ V +AKGEI+Q K G V ++N D
Sbjct: 173 LVQPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLKAGSVAIVNLD 220
>gi|343500669|ref|ZP_08738559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
tubiashii ATCC 19109]
gi|418477399|ref|ZP_13046532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
tubiashii NCIMB 1337 = ATCC 19106]
gi|342820031|gb|EGU54862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
tubiashii ATCC 19109]
gi|384575139|gb|EIF05593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
tubiashii NCIMB 1337 = ATCC 19106]
Length = 452
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 16/228 (7%)
Query: 29 INEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+++IAES++ +++ G +I TDTR A F A+ G+ FDAH+F + +
Sbjct: 6 LSQIAESLDAELI--GNDLVINSVSTDTR--AIETGALFIALVGERFDAHDF-AAQAVES 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G ++ +++ + + + L SLV+ C S V +TGS GK+T
Sbjct: 61 GAGALLMSRIVEADVPQLLVKDTKLALGQLGSLVHHTC-------STPTVAITGSCGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K M+A +E G +F + GN+NN +GV L+L+ D AV+EMG + GEI +
Sbjct: 114 VKEMVASIMEQKGRVLFTA-GNFNNDIGVPLTLLRSTPEDDFAVIEMGANHIGEIAYTTQ 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+ +P++ +V NV +HLE GS++ V +AKGEI+Q K G V ++N D
Sbjct: 173 LVQPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLKAGSVAIVNLD 220
>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium dentium ATCC 27679]
gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium dentium ATCC 27679]
Length = 493
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 23/270 (8%)
Query: 29 INEIAESVNGKILKWGPPGII---------CTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
+ EI ++V+G+++ GI C+D+R + + F AI G+ D H+F+S
Sbjct: 6 LAEIEQAVHGRLV--AAEGIASNGAMATSACSDSRQV--REGSVFVAIAGERVDGHDFVS 61
Query: 80 PELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGV 137
++ +G V ++ ++V D G Q+ + V L L R + S ++G+
Sbjct: 62 -KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGI 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V EMG +
Sbjct: 118 TGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHV 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + P+I VVL VG +HL GS E +A+AK EI + G V VLNA+D V
Sbjct: 177 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHV 236
Query: 258 ANLTVPRGVRKVFFGW--RRGCDVRLVAAQ 285
A ++ ++FG RR D R+VAA+
Sbjct: 237 AAMSGIAPGEVLWFGLPQRRTPD-RMVAAE 265
>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacillus flagellatus KT]
gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacillus flagellatus KT]
Length = 453
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 135/258 (52%), Gaps = 20/258 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ ++EIA++ G ++ G +I TD+R L P Q F A+ G+ FD H++ L
Sbjct: 1 MMYLSEIAKATGGTLV--GQDVLIQSVGTDSRKLEPA--QLFVALKGERFDGHDYARAVL 56
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+G V+ + V+ +T +L +A Y R S+FS + +TGS G
Sbjct: 57 -SEGATAVLLSHDVGATPAVLVE-------DTRLALGQLAAYWR-SKFSIPVAAITGSNG 107
Query: 143 KSTTKSMIALALE-SLGVN--VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
K++ K M+A L + G + V + GN NN +G+ L+L+ + AV+EMGM+ GE
Sbjct: 108 KTSVKEMLAAILRVAAGADDAVLATQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGE 167
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L R+ RP++ ++ N +HL LGS+E VA+AKGEIF+ V V+NADD
Sbjct: 168 ISYLTRIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEGLADDGVAVINADDSFAGL 227
Query: 260 LTVPRGVRKVF-FGWRRG 276
G R++ FG G
Sbjct: 228 WQSLAGRRRIVRFGLNAG 245
>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus buchneri ATCC 11577]
gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus buchneri ATCC 11577]
Length = 460
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 139/269 (51%), Gaps = 18/269 (6%)
Query: 28 TINEIAESVNG-------KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EI +++N KIL+ G+ C DTR L P Q F ++G H D H+FI
Sbjct: 4 TIGEIVKAINASIENETDKILQTEVNGV-CFDTRRLTPG--QLFIPLSGTH-DGHDFIEN 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G G V + ++ D+ V + + L + ++ Y ++ + ++ VTGS
Sbjct: 60 AIKG-GAVATLW--ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYL-TKINPRVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S NV ++Y N+NN +GV +++ ++ D V+EMGM G++
Sbjct: 116 NGKTTTKDMIASVL-SGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ P++ ++ +G++H+E G+ + +A AK EI K + + D+PL+
Sbjct: 175 DFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
K+ FG DV A + ++G
Sbjct: 235 AKQVDFSKMTFGRSHTDDV--FATKTSDG 261
>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus carnosus subsp. carnosus TM300]
gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 454
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 17/214 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + ++N F G++ D H F+ L G N K ++EG
Sbjct: 29 VSIDSRNI--DENNLFVPFKGENTDGHRFVEQALEDGA-----GAAFYQNDAKPDHEIEG 81
Query: 109 -----NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + L L N + ++ VTGS GK+TTK MI L+ V +
Sbjct: 82 PIIWVDDTLLALQELAKAYLKHVNPK----VIAVTGSNGKTTTKDMIESVLKP-AFKVKK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A P+I V+ N+G+SH++
Sbjct: 137 TQGNYNNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPDIAVITNIGESHMQ 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +ARAK EI K G V + + D+PL+
Sbjct: 197 DLGSREGIARAKFEIVSGLKPGGVFIYDGDEPLL 230
>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Oligotropha carboxidovorans OM5]
gi|337741938|ref|YP_004633666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM5]
gi|386030954|ref|YP_005951729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM4]
gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
carboxidovorans OM5]
gi|336096022|gb|AEI03848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM4]
gi|336099602|gb|AEI07425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM5]
Length = 478
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 128/268 (47%), Gaps = 17/268 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+ +WT +AE+++ P I I D+R +AP + +FAI G D H F+
Sbjct: 2 TTALWTTAAMAEAMHATRSGALPESINGISIDSRTIAPG--EAYFAIKGDVHDGHAFVEA 59
Query: 81 ELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L G + VI + D + V + L LV++A AR +R +V VT
Sbjct: 60 ALKNGGGLAVIAQSQRAKFSGDLPLLVVP-----DVLAGLVDLAKAAR-ARTQAKIVAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++TK + L++ G S ++NN GV LSL + AV E+GM+ G
Sbjct: 114 GSVGKTSTKEALRTVLQAQGAT-HVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP + ++ V HLE +E +A AK EIF + G +LN D+ A
Sbjct: 173 EIEPLVKLVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFA 232
Query: 259 NLTVPR---GV-RKVFFGWRRGCDVRLV 282
L GV R V FG D RL+
Sbjct: 233 RLAERAKACGVARIVTFGENEHADARLL 260
>gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
donghaensis MED134]
Length = 424
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 107/191 (56%), Gaps = 11/191 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR L KNQ +FA+ G++F+ ++F L + ++ +K +V
Sbjct: 16 VCTDTRSL--EKNQIYFALKGENFNGNKFAQQALKSGASLAIVD-------EKEYVTDRS 66
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L++L +A Y RN ++G+TGS GK+TTK +I A+ S NV + GN
Sbjct: 67 VLVDDVLSTLQQLANYHRN-YLDIPIIGITGSNGKTTTKELI-YAVLSEQYNVIATKGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + +I ++EMG + +GEI L +A+P + N G +HLE G
Sbjct: 125 NNHIGVPLTLLTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYITNFGKAHLEGFGGF 184
Query: 229 EDVARAKGEIF 239
E V + K E++
Sbjct: 185 EGVIKGKSELY 195
>gi|423606035|ref|ZP_17581928.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
gi|401243390|gb|EJR49761.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
Length = 460
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 14/227 (6%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI G +
Sbjct: 167 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDGGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
+ N D+PL++ G+ FG + D+ Q+ G+ ++
Sbjct: 227 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKL 273
>gi|418609339|ref|ZP_13172492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU065]
gi|374407741|gb|EHQ78589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU065]
Length = 451
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 492
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 138/259 (53%), Gaps = 21/259 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPN-----KNQWFFAITGQHFDAHEFISPE 81
++ EI + G +G P ++ + +A + K+ F I G D H FI P+
Sbjct: 4 MSLQEITTACGGTY--YGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGS 140
+ +G + + ++ ++ V + +L ++A + R R G+ +VG++GS
Sbjct: 61 VMEQGALCTLSEHPLSDSSP-YILVS-----SCAQALKDIAEHYR--RALGIKVVGISGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++TK MIA LE +V ++ GN+NN +G+ L++ I + ++AVLEMG+S E+
Sbjct: 113 VGKTSTKEMIASILEQ-KYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEM 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++A+P+I V+ N+G HLE+LG + V +AK E+F + G +LN DD ++ +
Sbjct: 172 NRLAKIAQPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRSGASIILNGDDDKLSEI 231
Query: 261 TVPRGVRKVFFGWRRGCDV 279
V F + G V
Sbjct: 232 AT---VHAASFSKQDGTTV 247
>gi|383812785|ref|ZP_09968212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Serratia sp. M24T3]
gi|383298195|gb|EIC86502.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Serratia sp. M24T3]
Length = 453
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 11/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ G+ FDAH+F + L ++ ++ + + V
Sbjct: 27 VTTDTRQITPGC--LFIALQGEKFDAHDFAADALKSGAAALIVSKRLALDAPQLVV---- 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L + + R + +V +TGS GK++ K M A L G NV + GN+
Sbjct: 81 ---ADTRIALGKLGAWVRR-QVPARVVALTGSSGKTSVKEMTAAILRQCG-NVLYTAGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + D AV+E+G + +GEI + RP+ +V N+ +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLTPEYDFAVVELGANHQGEIAYTTDLTRPQTALVNNLSAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
VA+AKGEIF+ V +LNAD+
Sbjct: 196 AGVAKAKGEIFEGLPADGVAILNADN 221
>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis ATCC 12228]
gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis RP62A]
gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis M23864:W2(grey)]
gi|417660266|ref|ZP_12309855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU045]
gi|417908981|ref|ZP_12552731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU037]
gi|418607552|ref|ZP_13170782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU057]
gi|418613179|ref|ZP_13176195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU117]
gi|418617964|ref|ZP_13180850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU120]
gi|418627611|ref|ZP_13190183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU126]
gi|418629973|ref|ZP_13192466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU127]
gi|420166529|ref|ZP_14673213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM088]
gi|420171688|ref|ZP_14678223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM070]
gi|420173609|ref|ZP_14680100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM067]
gi|420195900|ref|ZP_14701684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM021]
gi|420198022|ref|ZP_14703740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM020]
gi|420207904|ref|ZP_14713389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM008]
gi|420210263|ref|ZP_14715692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM003]
gi|420212519|ref|ZP_14717868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM001]
gi|420215195|ref|ZP_14720466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05005]
gi|420216700|ref|ZP_14721898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05001]
gi|420223685|ref|ZP_14728580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH08001]
gi|420230942|ref|ZP_14735619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04003]
gi|420235978|ref|ZP_14740509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051475]
gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis ATCC 12228]
gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis RP62A]
gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis M23864:W2(grey)]
gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU045]
gi|341654621|gb|EGS78360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU037]
gi|374404406|gb|EHQ75380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU057]
gi|374816615|gb|EHR80816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU117]
gi|374817225|gb|EHR81411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU120]
gi|374829057|gb|EHR92871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU126]
gi|374832492|gb|EHR96202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU127]
gi|394233536|gb|EJD79137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM088]
gi|394236803|gb|EJD82306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM070]
gi|394239646|gb|EJD85081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM067]
gi|394262501|gb|EJE07263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM021]
gi|394264953|gb|EJE09619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM020]
gi|394274924|gb|EJE19319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM008]
gi|394276497|gb|EJE20835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM003]
gi|394279640|gb|EJE23943.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM001]
gi|394282475|gb|EJE26668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05005]
gi|394287183|gb|EJE31150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH08001]
gi|394291379|gb|EJE35191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05001]
gi|394295825|gb|EJE39461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04003]
gi|394301614|gb|EJE45069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051475]
Length = 451
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 460
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 139/269 (51%), Gaps = 18/269 (6%)
Query: 28 TINEIAESVNG-------KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EI +++N KIL+ G+ C DTR L P Q F ++G H D H+FI
Sbjct: 4 TIGEIVKAINASIENETDKILQTEVNGV-CFDTRRLTPG--QLFIPLSGAH-DGHDFIEN 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G G V + ++ D+ V + + L + ++ Y ++ + ++ VTGS
Sbjct: 60 AIKG-GAVATLW--ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYL-TKINPRVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S NV ++Y N+NN +GV +++ ++ D V+EMGM G++
Sbjct: 116 NGKTTTKDMIASVL-SGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ P++ ++ +G++H+E G+ + +A AK EI K + + D+PL+
Sbjct: 175 DFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
K+ FG DV A + ++G
Sbjct: 235 AKQVDFSKMTFGRSHTDDV--FATKTSDG 261
>gi|417646906|ref|ZP_12296758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU144]
gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU144]
Length = 451
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LGS E +A+AK EI K + + + D+PL+
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
capitis SK14]
gi|417906614|ref|ZP_12550395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus capitis VCU116]
gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
capitis SK14]
gi|341597616|gb|EGS40162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus capitis VCU116]
Length = 451
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 120/211 (56%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGC-VGVIGNQVCNNWDKGFVQV 106
+ D+R + K+ F G++ D H F++ L G G G ++ + + + V
Sbjct: 29 VTIDSRKI--EKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELSEDIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L ++A A + ++ VTGS GK+TTK MI L + V ++ G
Sbjct: 87 E-----DTLKALQDLAK-AYLKYVNPKVIAVTGSNGKTTTKDMIESVL-TTEFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K + + D+PL+
Sbjct: 200 SREGIAKAKSEITIGLKENGTFIYDGDEPLL 230
>gi|441522437|ref|ZP_21004083.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gordonia sihwensis NBRC 108236]
gi|441457897|dbj|GAC62044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gordonia sihwensis NBRC 108236]
Length = 438
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 15/254 (5%)
Query: 30 NEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
++IA + G + GP + D+R P Q F I D H++I +
Sbjct: 6 SQIAAATGGTL--HGPDVTVDSASIDSRSARPG--QLFVPIVAAR-DGHDYIPAAVQAGA 60
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + VQV +T +L ++ + R +G +VGVTGSVGK++T
Sbjct: 61 PVYLTDRTPDPALAATAVQV-----ADTAEALADLGRFVRAG-LTGSVVGVTGSVGKTST 114
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K ++A L S S ++NN +G+ L+L+G + VLEMG G G I +L +
Sbjct: 115 KDLLAGVL-STTFRTAASEKSFNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSI 173
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A P + V+ V HLE GS+EDVARAKGE+ + + VLNAD P+VA +
Sbjct: 174 ASPTVGVLTRVEAVHLEMFGSIEDVARAKGELVEALPADGLAVLNADHPVVAAMASRTSA 233
Query: 267 RKVFFGWRRGCDVR 280
R V +G DVR
Sbjct: 234 RVVTYGVDPAADVR 247
>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
Pelagibacter sp. IMCC9063]
Length = 265
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGN--QVCNNWDKGFVQVEGNGNVNTLNSLVNM 121
FFAI G++ D H F+ + + V V+ N +V N F++V + SL N
Sbjct: 39 FFAIKGKNTDGHYFVKEVIKKRSKVIVVKNNFKVPKNNLHKFIKVRS-----PIRSLENF 93
Query: 122 ACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181
A Y R + G VG+TGS GK+T K M++ LE G F S ++NN G+ LSL
Sbjct: 94 AKYQRLTS-QGKFVGITGSFGKTTLKYMLSFFLEQYG-KTFSSPKSFNNHFGLPLSLSNT 151
Query: 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE 241
+ + E+GMS EI +L+++ RP+I V+ N+G +HL++ +L+ V AK EI
Sbjct: 152 PKNSQFNIFELGMSSSREIDKLSQILRPDIGVITNIGPAHLKNFKNLKAVCLAKAEIMNH 211
Query: 242 SKLGDVCVLNADD 254
+ VLN DD
Sbjct: 212 IQENGYIVLNKDD 224
>gi|392536655|ref|ZP_10283792.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas marina mano4]
Length = 460
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + + F A+ G +FD H+FI+ E KG +GVI + + F+
Sbjct: 27 INTDTRTVC--EGEVFLALKGPNFDGHKFIA-EAKQKGAIGVIVDHKVDVDIAQFI---- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A ++ + + +TGSVGK+T K M A L G +V + GN+
Sbjct: 80 ---VNDTRIALGAIGTAVMAQVAPRTIAITGSVGKTTVKEMCAAILSVHG-DVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI MA+P++ VV NV +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
VA+AKGEIF K V ++N D
Sbjct: 196 MGVAKAKGEIFDGLKENGVAIINCD 220
>gi|338536726|ref|YP_004670060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus fulvus HW-1]
gi|337262822|gb|AEI68982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus fulvus HW-1]
Length = 423
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
Query: 65 FAITGQHFDAHEFISPELYGKGCVGVIGNQV-CNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
A+ G+ FDAH F+ G V+ +G V E +TL +L +
Sbjct: 1 MALVGERFDAHAFVDAAAKGGAAGAVVARGRPLPALPEGLVLYEVE---DTLRALGALGR 57
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ R RF + V GS GK+TTK M+ L + G ++ GN NN +GV L+L ++
Sbjct: 58 HHRQ-RFRIPVCAVGGSNGKTTTKEMVGAILATRG-PALKTEGNLNNEIGVPLTLFRLEP 115
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
AV+E+GM+ GEI LAR+ +P+ V+ V HLE LGSLE VA A+GE+FQE
Sbjct: 116 RHVAAVIEVGMNQPGEIERLARIVQPDAGVITVVQPEHLEGLGSLEGVAAAEGELFQEMG 175
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
G V+N DD L+ R++ FG DVRL
Sbjct: 176 RGTTVVVNVDDALIPAQAERSTARRLTFGRAEHADVRL 213
>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
27678]
gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
27678]
Length = 493
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 23/270 (8%)
Query: 29 INEIAESVNGKILKWGPPGI---------ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
+ EI ++V+G+++ GI C+D+R + + F AI G+ D H+F+S
Sbjct: 6 LAEIEQAVHGRLVT--AEGISSNGAMATSACSDSRQV--REGSVFVAIAGERVDGHDFVS 61
Query: 80 PELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGV 137
++ +G V ++ ++V D G Q+ + V L L R + S ++G+
Sbjct: 62 -KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGI 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V EMG +
Sbjct: 118 TGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHV 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + P+I VVL VG +HL GS E +A+AK EI + G V VLNA+D V
Sbjct: 177 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHV 236
Query: 258 ANLTVPRGVRKVFFGW--RRGCDVRLVAAQ 285
A ++ ++FG RR D R+VAA+
Sbjct: 237 AAMSGIAPGEVLWFGLPQRRTPD-RMVAAE 265
>gi|408500771|ref|YP_006864690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium asteroides PRL2011]
gi|408465595|gb|AFU71124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium asteroides PRL2011]
Length = 508
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 14/244 (5%)
Query: 27 WTINEIAESVNGKILKWGP---PGIICTDTRILAPNK----NQWFFAITGQHFDAHEFIS 79
T+ E+ V+G++++ GP P R++ ++ + F AI G+H D H+++
Sbjct: 12 MTLEEVVGYVHGRLVEAGPGREPDRRSVRMRVVTDSRQAVADGLFVAIKGEHVDGHDYV- 70
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG--VLVGV 137
P L +GC + +++ D Q+ + V L L+ A R + SG ++G+
Sbjct: 71 PGLGAQGCRAALVDRLVPGAD--LPQILVDDTVAALG-LLAQANIDRRRKASGPFTVIGI 127
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK ++A L LG V G++NN +G+ L+ + + V EMG +
Sbjct: 128 TGSVGKTTTKDLLASLLALLG-PVVAPVGSFNNEIGLPLTALEVGPDTRYLVAEMGANHV 186
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L RM P++ +VL VG +HL GS+E +A+AK EI Q VLNADD V
Sbjct: 187 GEIASLTRMVPPDMALVLKVGVAHLGEFGSVERIAKAKSEIVQGLVPDGTAVLNADDSRV 246
Query: 258 ANLT 261
A +
Sbjct: 247 AAMA 250
>gi|406837962|ref|ZP_11097556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus vini DSM 20605]
Length = 455
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 9/234 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F + G+ D H F+ + G V + F +E
Sbjct: 28 VSFDTRTLRPGA--LFIPLIGEK-DGHHFVEQAI-ANGAVATLWQADHQKTTFSFPMLEV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N NTL +L +A Y N + + ++ VTGS GK+TTK MIA A+ + NV ++ N+
Sbjct: 84 N---NTLAALQKLAKYYLN-KINPRVIAVTGSNGKTTTKDMIA-AILATSFNVKKTQENF 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN++GV ++++ I+ ++ V+EMGM GE+ L+R+ P+I V+ +G++H+E G+
Sbjct: 139 NNQIGVPMTILNIEPNTEVLVVEMGMDHFGELDHLSRLVSPDIAVITMIGEAHIEFFGTR 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282
+ +A AK EI K V V N D+PL+ T FG + D R +
Sbjct: 199 DKIADAKMEITHGLKEDGVLVYNGDEPLLRERTSRLLQETRTFGGAQDNDYRAI 252
>gi|402819611|ref|ZP_10869179.1| hypothetical protein IMCC14465_04130 [alpha proteobacterium
IMCC14465]
gi|402511758|gb|EJW22019.1| hypothetical protein IMCC14465_04130 [alpha proteobacterium
IMCC14465]
Length = 495
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 131/270 (48%), Gaps = 12/270 (4%)
Query: 25 PIWTINEIAESVN-GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
P+WT E++E+++ ++W G+ DTR L+ F AI G D H+++ P +
Sbjct: 14 PLWTSQEVSEALSVSSQVEWQANGV-SIDTRTLS--HGDIFVAIRGDRLDGHDYV-PNAF 69
Query: 84 GKGCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G I D G + +T ++L + ARN R SG +V VTGSVG
Sbjct: 70 ENGAAVAIVAADAELADISGVSESHLIRVADTQDALEKLGQAARN-RMSGQVVAVTGSVG 128
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+T K + L LG S ++NN GV LSL + V E+GM+ GEI
Sbjct: 129 KTTVKEGLGLVFAQLG-KTHISQASYNNLWGVPLSLARMPADTVFGVFEIGMNHAGEISA 187
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVAN 259
L R RP+I V+ + ++H+E SLE +ARAK EIF+ ++ AD L+A
Sbjct: 188 LTRQVRPDIAVITKIANAHIEHFESLEGIARAKAEIFEGLDGLKTALIPADSDWADLLAQ 247
Query: 260 LTVPRGVRKVF-FGWRRGCDVRLVAAQVAN 288
G K+ FG D R+++ ++ +
Sbjct: 248 SAKDSGATKIVSFGESDASDARVISFKLHD 277
>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
Length = 415
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 14/211 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR ++PN F A+ G +++A+EF + E KG + VI + DK + E
Sbjct: 16 VCTDTRKISPN--SLFIALKGDNYNANEF-AQEALNKGALFVIID------DKKYYTDEN 66
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ N+L +L +A Y RN + ++ +TGS GK+TTK +I + L S + G
Sbjct: 67 KMLLVNNSLQALQELANYHRN-QLGLPIIALTGSNGKTTTKELINVVL-SKKYKTIATIG 124
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ I DIA++EMG + + EI L + P+ + N G +HLE G
Sbjct: 125 NLNNHIGVPLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFG 184
Query: 227 SLEDVARAKGEIFQESKLGD-VCVLNADDPL 256
+E V + K E++ K + +N DD +
Sbjct: 185 GIEGVIKGKSEMYTYLKTHNKTAFVNLDDSI 215
>gi|452993096|emb|CCQ95440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ultunense Esp]
Length = 463
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 121/214 (56%), Gaps = 12/214 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ TD+R + K Q F + G++F+ H FI + KG + + +Q D F+ V
Sbjct: 30 VSTDSRTIG--KGQLFIPLIGENFNGHSFIEQAI-KKGAIASLWDKSQPIPELDFPFILV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A R + + ++G+TGS GK+TTK +IA L S ++ G
Sbjct: 87 E-----DTLIALQQLAKEYR-EQLNVKVIGITGSNGKTTTKDIIASIL-STKYKTKKTKG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G L+L+ +D +++V+EMG GEI L +A+P+I ++ N+G++HLE L
Sbjct: 140 NYNNLIGAPLTLLELDEDTEVSVVEMGTDKFGEISVLTSIAKPDIAIITNIGEAHLEDLK 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+ E++A+AK EI + + + DDP++ +
Sbjct: 200 TPENIAKAKLEILEGLSKDGLFIYWGDDPILKKI 233
>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
Length = 457
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + + F A+ G +FD H+FI+ E KG +GVI + + F+
Sbjct: 24 INTDTRTVC--EGEVFLALKGPNFDGHKFIA-EAKQKGAIGVIVDHKVDVDIAQFI---- 76
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A ++ + + +TGSVGK+T K M A L G +V + GN+
Sbjct: 77 ---VNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHG-DVLATKGNF 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI MA+P++ VV NV +HLE GSL
Sbjct: 133 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSL 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
VA+AKGEIF K V ++N D
Sbjct: 193 MGVAKAKGEIFDGLKENGVAIINCD 217
>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Neptuniibacter caesariensis]
gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanospirillum sp. MED92]
Length = 457
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 135/263 (51%), Gaps = 12/263 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
W +N++ + G + + + TDTR + K F A+ G +FD H+++ + + KG
Sbjct: 5 WYLNQLKDQFGGLVTQDVEFSGVSTDTRSI--TKGDLFVALVGPNFDGHDYVE-QAFSKG 61
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + ++ + K V+ +T +L ++A A RF G + VTGS GK+T
Sbjct: 62 AVAAVVSRSDSVSRKAAWVVD-----DTRIALADIA-KANRQRFEGPVYAVTGSSGKTTV 115
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K M+ A+ S V + GN NN +GV L+L + +IAV+E G S +GEI +
Sbjct: 116 KEMLH-AILSQNAEVLATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTDI 174
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVA-NLTVPR 264
+ P++ ++ N +HLE GSL+ V +K EIF S+ G ++N DDP L+
Sbjct: 175 SCPDVAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHTE 234
Query: 265 GVRKVFFGWRRGCDVRLVAAQVA 287
G+ ++ F R + L A+ +A
Sbjct: 235 GLPRLTFSARGDLEADLWASDLA 257
>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acidothermus cellulolyticus 11B]
gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acidothermus cellulolyticus 11B]
Length = 473
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 113/234 (48%), Gaps = 12/234 (5%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + P F AI G D H F + + G V V+ + V V
Sbjct: 29 GPVVADSRQVTPGG--LFVAIRGARVDGHAF-AEQAVSAGAVAVLADH--------PVGV 77
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+T+ L +A + V++G+TGS GK++TK + A L LG V + G
Sbjct: 78 PAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDLGAQVLARLGPTVAPT-G 136
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
+ N VG+ L+++ DR VLE G G I L R+A P I VVLNVG +HL G
Sbjct: 137 SLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAYLCRIAPPRIGVVLNVGSAHLGEFG 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
S E +A+AKGE+ + VLNADDPLV + R V FG DVR
Sbjct: 197 SREAIAQAKGELVEALPADGTAVLNADDPLVLGMRHRTRARVVTFGTSADADVR 250
>gi|374705574|ref|ZP_09712444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. S9]
Length = 459
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 18/233 (7%)
Query: 29 INEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
++EIA+++N +++ + TD+R + P Q F A++G +FD H++++ ++ KG
Sbjct: 7 LSEIADALNARLIGEDCAFAAVSTDSRSIKPG--QLFIALSGPNFDGHDYLA-QVSEKGA 63
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V + + N + V +T +L + R + F G LV VTGS GK+T K
Sbjct: 64 VAALVEREVANAPLSQLLV-----ADTRRALGQLGALNRQA-FGGPLVAVTGSSGKTTVK 117
Query: 148 SMIALALESL----GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
M+A L G V + GN NN +G L+L+ + AV+E+G SG GEI
Sbjct: 118 EMLASILREAFVEHGSAVLATRGNLNNELGAPLTLLELGPEHKAAVIELGASGVGEIAYT 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD--VCVLNADD 254
+A+P++ ++ N G +H+ G E + AKGEI Q LGD V VLN DD
Sbjct: 178 VSLAQPQVAIITNAGTAHVGEFGGPEKIVEAKGEILQ--GLGDDGVAVLNRDD 228
>gi|422911232|ref|ZP_16945858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
cholerae HE-09]
gi|341632038|gb|EGS56912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
cholerae HE-09]
Length = 453
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + F A+ G+ FDAH+F S + G G V ++ + + V +
Sbjct: 27 ISTDSRTIPAEA--LFVALVGERFDAHDFASQAITG-GAVALLVERELDADCSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ A D AV+E+G + GEI + +P++ +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTTADDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSI 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQAGAVAIVNLD 220
>gi|365961209|ref|YP_004942776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavobacterium columnare ATCC 49512]
gi|365737890|gb|AEW86983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavobacterium columnare ATCC 49512]
Length = 427
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 14/211 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR ++PN F A+ G +++A+EF + E KG + VI + DK + E
Sbjct: 16 VCTDTRKISPN--SLFIALKGDNYNANEF-AQEALNKGALFVIID------DKKYYTDEN 66
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ N+L +L +A Y RN + ++ +TGS GK+TTK +I + L S + G
Sbjct: 67 KMLLVNNSLQALQELANYHRN-QLGLPIIALTGSNGKTTTKELINVVL-SKKYKTIATIG 124
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ I DIA++EMG + + EI L + P+ + N G +HLE G
Sbjct: 125 NLNNHIGVPLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFG 184
Query: 227 SLEDVARAKGEIFQESKLGD-VCVLNADDPL 256
+E V + K E++ K + +N DD +
Sbjct: 185 GIEGVIKGKSEMYTYLKTHNKTAFVNLDDSI 215
>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Rhodopseudomonas palustris HaA2]
gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodopseudomonas palustris HaA2]
Length = 479
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 129/270 (47%), Gaps = 21/270 (7%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
S P+WT + I ++ + G P I D+R LAP +FAI G D H+F
Sbjct: 2 SKQPLWTSDAIIAAMGAAV--QGTPARDVFGISIDSRTLAPG--DAYFAIRGDVHDGHDF 57
Query: 78 ISPELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
+ L + V+ + D + V+ + L+ L ++ AR +R ++
Sbjct: 58 VEAALKAGAALAVVETAQRGKFAPDAPLLLVD-----DVLDGLRDLGRAAR-ARLDAKVI 111
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
VTGSVGK++TK + L + G S ++NN GV L+L +V AV E+GM+
Sbjct: 112 AVTGSVGKTSTKEALRGVLGAQG-ETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMN 170
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +M RP + ++ V HLE +E +A AK EIF + G + VLN D+P
Sbjct: 171 HAGEIEPLVKMVRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNP 230
Query: 256 LVANLTV---PRGV-RKVFFGWRRGCDVRL 281
+ LT GV R V FG D RL
Sbjct: 231 MFKRLTASARKAGVERIVSFGVHAKADARL 260
>gi|340356608|ref|ZP_08679250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sporosarcina newyorkensis 2681]
gi|339620535|gb|EGQ25104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sporosarcina newyorkensis 2681]
Length = 462
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
++GVTGS GK++TK ++A L S V ++ GN+NN +G+ L+L+ ++ ++A+LEM
Sbjct: 110 TIIGVTGSNGKTSTKDLLAGVL-SPYFKVKKTEGNFNNELGLPLTLLSVEEETEVAILEM 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GMSG GEI L+ +A P V+ N+G++H++ LGS E +A+AK EI K + + +
Sbjct: 169 GMSGFGEISFLSTLAAPHFAVITNIGEAHMQDLGSREGIAKAKFEIIDGLKKDGLLLYDG 228
Query: 253 DDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLG 292
D+PL+ NL + VR + FG+ R L A Q+ + G
Sbjct: 229 DEPLLQNLIASQPAVRSMSFGYERA---DLTAEQIESTDKG 266
>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Hyphomicrobium denitrificans ATCC 51888]
Length = 467
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 129/267 (48%), Gaps = 26/267 (9%)
Query: 25 PIWTINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
P+WT +E++ +V G + G P I DTR L F A+ Q D H+F+SP
Sbjct: 3 PLWTFSELS-AVFGVAPEGGTDQPVTGISIDTRTL--QAGDLFVALKDQR-DGHDFVSPA 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFS--GVLV 135
++ +G+V+ +G + +TL +L + AR+ R S ++
Sbjct: 59 FKAGAAAALV--------SEGYVRRAEDGALFRVSDTLKALEALGRAARD-RLSPDARVI 109
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
VTGS GK+ TK M+ L LGV S ++NN GV L+L + R V E+GM+
Sbjct: 110 AVTGSAGKTGTKEMLRACLSHLGVT-HASEKSYNNHWGVPLTLARMPRETRFGVFEIGMN 168
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +M RP ++ V HLE S+E +A AKGEIF+ G ++ D+P
Sbjct: 169 HAGEIRPLTKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGTAIIKFDNP 228
Query: 256 LVANLTV---PRGVRKVFFGWRRGCDV 279
A L G + V FG+ G DV
Sbjct: 229 HAARLKAIAERLGAKAVTFGFSAGADV 255
>gi|418633624|ref|ZP_13196032.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU129]
gi|420190986|ref|ZP_14696923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM037]
gi|420204909|ref|ZP_14710447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM015]
gi|374838962|gb|EHS02495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU129]
gi|394258084|gb|EJE02976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM037]
gi|394271630|gb|EJE16119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM015]
Length = 451
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 21/228 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|418322725|ref|ZP_12934037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus pettenkoferi VCU012]
gi|365231047|gb|EHM72110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus pettenkoferi VCU012]
Length = 454
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 120/220 (54%), Gaps = 14/220 (6%)
Query: 64 FFAITGQHFDAHEFISPELYGKG---CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVN 120
F G++ D H F+ P+ G C + D + VE +TL +L
Sbjct: 42 FIPFKGENVDGHRFV-PQALNDGAGACFHQRDTALAEEVDGPIIWVE-----DTLKALQQ 95
Query: 121 MA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A Y R+ ++ VTGS GK+TTK MI L + V ++ GN+NN +G+ L+++
Sbjct: 96 LAQAYLRH--VDPKVIAVTGSNGKTTTKDMIESVL-APEFKVKKTQGNYNNEIGMPLTIL 152
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+D ++++LEMGMSG EI L+++A+P+I V+ N+G+SH++ LGS E +A+AK EI
Sbjct: 153 QLDEDTEVSILEMGMSGYHEIEALSQLAQPDIGVITNIGESHMQDLGSREGIAQAKAEIV 212
Query: 240 QESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCD 278
K + + + D+PL+ ++ + + + G CD
Sbjct: 213 LGMKDNGLFIYDGDEPLLKPHVQKLQQLDSLSIGLSDECD 252
>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus HD100]
gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus HD100]
Length = 473
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 122/218 (55%), Gaps = 13/218 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDKGFV 104
I TDTR A + Q F A+ G+ FDAH F+ + +G G++ ++ + DK +
Sbjct: 28 IGTDTR--AQLQGQLFIALKGEAFDAHNFLDKAVE-QGASGLLVHEENALIEKLKDKATI 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ +TL +L + +AR+ S +VG+TGS GK+TTK A AL ++V +
Sbjct: 85 LLV----PDTLKALQKLGNWARHES-SARIVGITGSNGKTTTKEFTA-ALVGSSMDVHYN 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
G++NN GV +L+ + D+A++EMGM+ GEI EL +A P++ V VG +H+E
Sbjct: 139 KGSFNNHWGVPFTLLQLPPNKDVAIIEMGMNHAGEITELVHIAEPDVVVCTMVGRAHMEF 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
G++E VA AK EI++ + V + N D+ N+ V
Sbjct: 199 FGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYV 236
>gi|427419710|ref|ZP_18909893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 7375]
gi|425762423|gb|EKV03276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 7375]
Length = 449
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 10/208 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G I TDTR + + F A+ G+ FD H+F+ L G + I Q + ++V
Sbjct: 33 GHISTDTRTI--QVDDLFLALEGERFDGHKFVEQALT-SGAIATITRQGVITAEVPRIEV 89
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL + + + R R +V +TGSVGK+TTK +I+ AL G V ++
Sbjct: 90 Q-----DTLVAYQRIGRWWRQ-RLGLPVVAITGSVGKTTTKELISAALGQHG-GVNKTRA 142
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ I D AV+EMGM G GEI L ++A+P + V+ NVG +H+ LG
Sbjct: 143 NFNNEIGVPKTLLEITPEHDYAVVEMGMRGPGEIALLTQIAQPNVAVITNVGTAHIGRLG 202
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD 254
S + +A AK E+ V VLN D+
Sbjct: 203 SEQAIADAKCELLANMPPDGVAVLNQDN 230
>gi|430004084|emb|CCF19875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium sp.]
Length = 477
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + ++ G+ + P GI I D+R +AP + FFAI G D H+F S +
Sbjct: 4 LWTCDAMVGAMEGRPVGTLPEGITGISIDSRSIAPG--EAFFAIKGDRVDGHDFASIAVA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L +L + +R R +V VTGS
Sbjct: 62 NGASLIVVSEAKLPAMGRLTIPMIVVE-----DVLTALGKLGIASRQ-RSRAQIVAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L G V + ++NN GV L+L + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPFG-TVHAAVASFNNHWGVPLTLARMPEEAQFGVFEIGMNHPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL +LE++A AK EIF+ + G +LN D+ A L
Sbjct: 175 RPLVKMVRPHVAIITTIAAAHLGHFRNLEEIAAAKAEIFEGLEPGGAAILNRDNKQFAFL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRL 281
GV +++ FG D RL
Sbjct: 235 EQRAQEVGVGRIYTFGQHAKADFRL 259
>gi|365858352|ref|ZP_09398287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacteraceae bacterium AT-5844]
gi|363714282|gb|EHL97816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacteraceae bacterium AT-5844]
Length = 456
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 20/268 (7%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
P+WT E+ ++ G + G P I + D+R + P F A+ D H+F+
Sbjct: 2 TGPLWTAAELRDATGGTL--AGEPVITGVAIDSRSVQPG--DLFVALRDVR-DGHDFVPA 56
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
++ +V +QV +TL L + R +R + L +TGS
Sbjct: 57 AFANGAAAALVDREVEGAP---LLQV-----ADTLAGLTALGAAGR-ARGTARLAAITGS 107
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L + G + ++NN G+ L+L + R VLE+GM+ +GEI
Sbjct: 108 VGKTTTKDMLRHGLSAFGAT-HAAVASYNNHWGLPLTLARMPRDAAYGVLEIGMNHRGEI 166
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL---V 257
LAR+ARP + V+ +G +H+ LGSL+D+A K +I + G VL D+P +
Sbjct: 167 APLARLARPHVVVITQIGAAHIGHLGSLDDIAAEKADILEGLSEGGTAVLPRDNPFFAPI 226
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
A G + FG + RLV+A+
Sbjct: 227 AERAEAAGFTVIGFGEHSQAEARLVSAE 254
>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
tasmaniensis Et1/99]
gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
tasmaniensis Et1/99]
Length = 453
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 16/229 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ ++AE G + +G G I TDTR F AI G+ FDAH+F++ +
Sbjct: 5 TLQQLAEITGGTL--YGSDGAIAEVTTDTR--KATAGNLFIAIKGERFDAHDFVADAVTA 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
GC G++ +Q + V+V +T +L +A + R R +V +TGS GK+
Sbjct: 61 -GCSGLLVSQ------RLPVEVSQVVVADTRIALGQLAAWVRQ-RSEARIVALTGSSGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+ K M A L G ++ + GN NN +GV L+L+ + AV+E+G + + EI
Sbjct: 113 SVKEMTAAILRQCGETLYTA-GNLNNDIGVPLTLLRLKPQHQYAVIELGANHQDEIAYTT 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+ RPE +V N+ +HLE GSL VA+AKGEIF L ++N+D
Sbjct: 172 DLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSD 220
>gi|420178511|ref|ZP_14684841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM057]
gi|420181305|ref|ZP_14687508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM053]
gi|420200773|ref|ZP_14706413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM031]
gi|394246234|gb|EJD91495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM057]
gi|394246653|gb|EJD91907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM053]
gi|394267517|gb|EJE12104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM031]
Length = 451
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 21/228 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Streptomyces sviceus ATCC 29083]
gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Streptomyces sviceus ATCC 29083]
Length = 447
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 116/256 (45%), Gaps = 14/256 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQ---WFFAITGQHFDAHEFISPELYG 84
++ EIA V G + G + T +L + Q F A G+H D H Y
Sbjct: 5 SVGEIAAVVGGTV--SGDGSVTVTAPAVLDSRRAQQGSLFLAFAGEHVDGHA------YA 56
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ V + V L +L R + + GVTGS GK+
Sbjct: 57 EQAGQAGAAAVLGSRPTPLPTVVAEDTQAALQALAVHVVGRLRDRLT--VFGVTGSQGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK ++A L S G ++G++NN +GV L+++ + LEMG G+I EL
Sbjct: 115 STKDLLAAVLSSAG-QTIATFGSFNNELGVPLTMLRTEATTRFLALEMGARHLGDISELT 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ P+I VVLNVG +HL GS E +A+AKGE+ Q G VLNADDP VA +
Sbjct: 174 GLVAPDIAVVLNVGQAHLGEFGSREAIAKAKGELVQGLAPGGTAVLNADDPRVAAMRSLT 233
Query: 265 GVRKVFFGWRRGCDVR 280
+ FG DVR
Sbjct: 234 DRPVLTFGRTEHADVR 249
>gi|387813214|ref|YP_005428696.1| D-alanine:D-alanine-adding enzyme [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338226|emb|CCG94273.1| D-alanine:D-alanine-adding enzyme [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 465
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 115/246 (46%), Gaps = 13/246 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + + Q F A+ G+ FD HEF+ L V+ +V + V +
Sbjct: 33 VSTDTRSV--GEGQLFVALRGERFDGHEFLGQALTQGAVAAVVDTEVTD------VAIPQ 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T+ +L ++A A S + LV +TGS GK+T + M L +G + + GN
Sbjct: 85 LVVSDTVQALADLAS-ANRSGSAARLVAITGSSGKTTVREMTGAILAGMGPTLV-TEGNL 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L + +E+G SG GEI + RP++ ++ N G +HLE GS
Sbjct: 143 NNHIGVPLTLFRLTPDHQFGAIELGASGLGEIANTVSITRPQVAILTNAGQAHLEGFGSY 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR---GCDVRLVAAQ 285
+++ AKGEI VLN DDP G R+V R G D R A
Sbjct: 203 QNIVLAKGEIIDGVPADGAVVLNRDDPAFDQWHARAGQRRVLGVSRMGHPGADYRAEAIM 262
Query: 286 VANGGL 291
+ G
Sbjct: 263 ATDQGF 268
>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis W23144]
gi|418327552|ref|ZP_12938705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis 14.1.R1.SE]
gi|418632424|ref|ZP_13194855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU128]
gi|420174250|ref|ZP_14680703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM061]
gi|420193515|ref|ZP_14699366.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM023]
gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis W23144]
gi|365232910|gb|EHM73885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis 14.1.R1.SE]
gi|374832331|gb|EHR96046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU128]
gi|394245184|gb|EJD90501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM061]
gi|394259782|gb|EJE04613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM023]
Length = 451
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 12/225 (5%)
Query: 35 SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-GVIG 92
++ K LK G+ D+R + N+ F G++ D H FI+ L G G V
Sbjct: 16 EIDEKYLKETINGV-SIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKE 72
Query: 93 NQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIAL 152
N+ + VE +TL +L +A N + ++ VTGS GK+TTK MI
Sbjct: 73 NRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIES 126
Query: 153 ALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212
L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I
Sbjct: 127 VL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPDIA 185
Query: 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
++ N+G+SH++ LGS E +A+AK EI K + + + D+PL+
Sbjct: 186 IITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|417644425|ref|ZP_12294415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri VCU121]
gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU121]
Length = 453
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NNWDKGFVQV 106
+ D+R A K+ F G++ D H F+ L V N + + V
Sbjct: 29 VTIDSR--AIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLSENIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L + V ++ G
Sbjct: 87 D-----DTLQALQDLAK-AYLKYVNPKVIAVTGSNGKTTTKDMIESVLNT-EFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K + + D+PL+
Sbjct: 200 SREGIAQAKSEITIGLKPNGTFIYDGDEPLL 230
>gi|416128219|ref|ZP_11597224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus epidermidis FRI909]
gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus epidermidis FRI909]
Length = 451
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 21/228 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLL 230
>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Haliscomenobacter hydrossis DSM 1100]
gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
hydrossis DSM 1100]
Length = 434
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 14/233 (6%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + TD+R + P FFA+ G +F+ +++ L V+ + D+ V V
Sbjct: 14 GKVSTDSRKIEPGC--IFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQDRCIV-V 70
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ + L++L +A + R + ++ +TGS GK+TTK +IA L S + + G
Sbjct: 71 D-----DVLDTLQALAKFHRR-QLHIPIIAITGSNGKTTTKELIAAVLGS-QYPMHYTQG 123
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ +D +++AV+EMG + +GEI +L R+A P ++ N+G +HLE G
Sbjct: 124 NLNNHIGVPLTLLQLDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNIGKAHLEGFG 183
Query: 227 SLEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+E V + K E+++ D + +N D+P + L+ GVRK F + R D
Sbjct: 184 GIEGVKKGKSELYRYLAETDGLAFVNNDEPFLVELS--SGVRKRIF-YERSDD 233
>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 2_A_57_CT2]
gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 2_A_57_CT2]
Length = 457
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 12/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ D+R + + F G++ D H F+ + KG + N + V
Sbjct: 30 VSIDSRKIG--RGNLFVPFKGENSDGHRFVEDAIE-KGAAAAFWQKDVPNPPLHLPILIV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A R+ + G+TGS GK+TTK M A L SL V ++ G
Sbjct: 87 E-----DTLTALQELARSYRD-ELKIKVAGITGSNGKTTTKDMTANLL-SLQYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ ++ +IAVLEMGMSG+GEI L ++ARP+ ++ N+G+SHL+ LG
Sbjct: 140 NYNNHIGLPLTILALEEDTEIAVLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A AK EI + + + D+PL+
Sbjct: 200 SREGIAEAKLEIVNGLQENGLVIYYGDEPLL 230
>gi|406938041|gb|EKD71348.1| hypothetical protein ACD_46C00204G0002 [uncultured bacterium]
Length = 467
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L P F AI G+ D H+FI ++ +V ++ + V+
Sbjct: 44 ISIDTRSLQPG--NLFVAIPGERVDGHDFIEAARQKGAAAALVTREVHSSLPQILVE--- 98
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL----ESLGVNVFQS 164
N + +L + + RN +F+ V VTGS GK+T K+MIA + E V +
Sbjct: 99 ----NVVPALGKLGAFWRN-QFNIPFVAVTGSNGKTTLKNMIAAIMIADCEGDESEVLAT 153
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
G NN +G+ L+L ++ AV+EMGM+ GEI LA + RP + V+ N +HLE
Sbjct: 154 IGTLNNHLGLPLTLTRLNEKHRYAVIEMGMNHFGEIDYLAHLTRPNVAVITNAASAHLEG 213
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV--RKVF--FGWRRGCDV 279
LG L VARAK EIF + VLN DD A RG+ + F FG+ + D+
Sbjct: 214 LGDLAGVARAKAEIFHGLQTNGTAVLNRDD---AFFNFWRGLVNQHPFLSFGFNKDADI 269
>gi|445059171|ref|YP_007384575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri SG1]
gi|443425228|gb|AGC90131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri SG1]
Length = 453
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NNWDKGFVQV 106
+ D+R A K+ F G++ D H F+ L V N + + V
Sbjct: 29 VTIDSR--AIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLSENIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L + V ++ G
Sbjct: 87 D-----DTLQALQDLAK-AYLKYVNPKVIAVTGSNGKTTTKDMIESVLNT-EFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K + + D+PL+
Sbjct: 200 SREGIAQAKSEITIGLKPNGTFIYDGDEPLL 230
>gi|418614613|ref|ZP_13177576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU118]
gi|374819503|gb|EHR83625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU118]
Length = 451
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 21/228 (9%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITAGLKTNGIFIYDGDEPLL 230
>gi|390451980|ref|ZP_10237540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor aquibiodomus RA22]
gi|389660299|gb|EIM71995.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor aquibiodomus RA22]
Length = 474
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 134/268 (50%), Gaps = 12/268 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT + ++ G+ L I I DTR L P FFAI G+ FD H+F +
Sbjct: 2 SALWTHEALVQATGGRPLGQPVAAITGISIDTRTLQPG--DAFFAIQGERFDGHDFATAA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V V+ G + V + ++ ++ AR R +V VTGSV
Sbjct: 60 MAAGASVLVVSEGKLPAL--GRLGVPKVVVPDVQKAMEDLGRAAR-LRSRAKIVAVTGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK+M+ A + G +V + ++NN GV L+L + D A+ E+GM+ EI
Sbjct: 117 GKTSTKNMMRQAFSACG-SVHAADRSFNNHWGVPLTLARMPADCDFAIFEIGMNHPDEIR 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L +M RP I VV V +HL S+E++ARAKGEIF+ G ++N DD ++
Sbjct: 176 PLVKMVRPHIAVVTLVAAAHLGFFKSVEEIARAKGEIFEGVVKGGAALVNRDDKRWKTLS 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQ 285
L GV+ + FG D+RL+ A+
Sbjct: 236 ALAEEAGVKTIAGFGENARADIRLMHAE 263
>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Marinobacter aquaeolei VT8]
gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Marinobacter aquaeolei VT8]
Length = 465
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + Q F A+ G+ FD HEF+ L V+ ++ + V +
Sbjct: 33 VSTDTRSV--GDGQLFVALRGERFDGHEFLGQALKQGAVAAVVDTEITD------VAIPQ 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T+ +L ++A R S + LV +TGS GK+T + M L +G + + GN
Sbjct: 85 LVVSDTVQALADLASGNR-SESAARLVAITGSSGKTTVREMTGAILAGMGPTLV-TEGNL 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L + +E+G SG GEI + RP++ ++ N G +HLE GS
Sbjct: 143 NNHIGVPLTLFRLTPDHQFGAIELGASGLGEIAHTVSITRPQVAILTNAGQAHLEGFGSY 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG 276
+++ AKGEI VLN DDP G R+V R G
Sbjct: 203 QNIVLAKGEIIDGVPADGAVVLNRDDPAFDQWHARAGQRRVLGVSRMG 250
>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus hilgardii ATCC 8290]
gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus hilgardii ATCC 8290]
Length = 460
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 18/269 (6%)
Query: 28 TINEIAESVNG-------KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EI +++N KIL+ G+ C DTR L P Q F ++G H D H+FI
Sbjct: 4 TIGEIVKAINASIENETDKILQTEVNGV-CFDTRRLTPG--QLFIPLSGTH-DGHDFIEN 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G + + N + + + L N R ++ VTGS
Sbjct: 60 AIKGGAVATLWASDHTNRLPVAIPALVVDDPLAAFQKLSKYYLTKINPR----VIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S NV ++Y N+NN +GV +++ ++ D V+EMGM G++
Sbjct: 116 NGKTTTKDMIASVL-SGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ P++ ++ +G++H+E G+ + +A AK EI K + + D+PL+
Sbjct: 175 DFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
K+ FG DV A + ++G
Sbjct: 235 AKQVDFSKMTFGRSHTDDV--FATKTSDG 261
>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aerococcus viridans ATCC 11563]
gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aerococcus viridans ATCC 11563]
Length = 466
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--VQVEGN 109
D+R++ P F + G D H +I + G V + + N GF +QVE
Sbjct: 33 DSRLITPGA--LFVPLKGAT-DGHSYIDKAIEN-GAVAALWSNDPNEAPVGFPIIQVE-- 86
Query: 110 GNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
++LV M +A+ +VG+TGS GK+TTK M A AL S + V ++ GN
Sbjct: 87 ------DTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAAL-STALKVHKTNGN 139
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ +++ + ++ VLEMGMSG GEI L+++A P++ V+ +G++H+E LGS
Sbjct: 140 YNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLSKLAEPDVVVITMIGENHIEFLGS 199
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
E++A+AK EI K + D+PL+ +
Sbjct: 200 RENIAKAKLEILDGLKEEGTFIYPGDEPLIVD 231
>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis subsp. hominis C80]
gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis subsp. hominis C80]
Length = 451
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 116/211 (54%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R + K F G++ D H F+ L G + ++ + V
Sbjct: 29 VTIDSRHVE--KEMLFVPFKGENVDGHRFVEQALKSGAGASFYEKGQDISDSIQGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A A + ++GVTGS GK+TTK MI L + V ++ G
Sbjct: 87 D-----DTLTALQQLAK-AYLKHVNPKVIGVTGSNGKTTTKDMIESVLHT-EFRVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ +I++LEMGMSG EI L+++A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K + + D+PL+
Sbjct: 200 SREGIAKAKSEITIGLKSDGTFIYDGDEPLL 230
>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii JV-V16]
gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii JV-V16]
Length = 455
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 31 EIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
EIA++++ I P I + D+R + N+N F + G+ D H+FI+ + G V
Sbjct: 7 EIAKALDTTIEGNSDPVISSVAFDSRKI--NENALFVPLKGER-DGHDFINSAI-ANGAV 62
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ W+KG N V +TL ++ +A Y N + + +VG+TGS GK+
Sbjct: 63 ATL-------WEKGHPNKPDNFPVVEVDDTLAAMQELAKYYLN-KVNPAVVGITGSNGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+A L S NV ++ N+NN +GV ++++ + +I VLEMGM G++ L+
Sbjct: 115 TTKDMVAAVL-SKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLS 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ +P++ V+ +G++H+E GS + +A AK EI K + N D+PL+
Sbjct: 174 SLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKI 233
Query: 265 GVRKVFFGW 273
K FG+
Sbjct: 234 SQAKSTFGF 242
>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis SK119]
gi|418618982|ref|ZP_13181825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis VCU122]
gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis SK119]
gi|374825843|gb|EHR89762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis VCU122]
Length = 451
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 116/211 (54%), Gaps = 11/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R + K F G++ D H F+ L G + ++ + V
Sbjct: 29 VTIDSRHVE--KEMLFVPFKGENVDGHRFVEQALKDGAGASFYEKGQDISDSIQGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A A + ++GVTGS GK+TTK MI L + V ++ G
Sbjct: 87 D-----DTLTALQQLAK-AYLKHVNPKVIGVTGSNGKTTTKDMIESVLHT-EFRVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ +I++LEMGMSG EI L+++A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S E +A+AK EI K + + D+PL+
Sbjct: 200 SREGIAKAKSEITIGLKSDGTFIYDGDEPLL 230
>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus stomatis DSM 17678]
gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus stomatis DSM 17678]
Length = 469
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 18/237 (7%)
Query: 29 INEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ E+ ++ G+++ G G I D+R+ P F AI G+ D H F+ +
Sbjct: 6 VEEVVQATQGQLVCQGMDGGEITNIVIDSRLAGPGA--MFVAIVGESTDGHIFLESA-HQ 62
Query: 85 KGC-VGVIGNQ--VCNNW-DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+GC ++ N+ + + + D V+V+ NT L +A Y R+ F VG+TGS
Sbjct: 63 EGCRFFLVSNESYITDRFKDSTLVKVD-----NTEIGLGLIAKYYRD-MFDIPFVGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ M+ L S N ++ N+NN+ GV L+L ++ AV+EMGMSG GEI
Sbjct: 117 VGKTTTRDMVYSVLAS-KFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LA + RP+I ++ N+G SH+E LGS E + +AK EI ++N DD +
Sbjct: 176 EYLANIVRPKIGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYL 232
>gi|350273745|ref|YP_004885058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
japonica YH]
gi|348592958|dbj|BAK96919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
japonica YH]
Length = 449
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ N +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----NCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQH-DFLVFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNAD 253
F D+ V+NAD
Sbjct: 205 FANFSKNDIAVINAD 219
>gi|341584098|ref|YP_004764589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia heilongjiangensis 054]
gi|340808323|gb|AEK74911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia heilongjiangensis 054]
Length = 449
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ N +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----NCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQH-DFLVFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNAD 253
F D+ V+NAD
Sbjct: 205 FANFSKNDIAVINAD 219
>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 510
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 129/283 (45%), Gaps = 25/283 (8%)
Query: 13 TSKTTFRCPSNSPIWTINEIAESVNGK----------ILKWGPPGIICTDTRILAPNKNQ 62
T+K + S+ + T ++AE V+ + GP +I DT + P
Sbjct: 6 TTKNQGQGESDVRVTTTGDLAELVSAHGTPCRLQGSAAVPVGPQVVI--DTHQVTPGA-- 61
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F + G+H D + ++G+ V + V+ G G ++ L + V
Sbjct: 62 LFVGLPGEHVDGADLAPQAAGAGAAAALVGHDVTAGLPRLIVEDAGRG-LSALATGVVAT 120
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
AR + +TGS GK++TK ++A LE+ G V + GN NN +GV LS G+D
Sbjct: 121 ELARGL----ITFAITGSSGKTSTKDLLAQVLEATGPTVSPA-GNHNNEIGVPLSACGVD 175
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
V EMG GKG++ L R+ P I VLNVG +HL GS + +A AKGEI +
Sbjct: 176 ATTRYLVSEMGSRGKGDVATLCRIVPPRISTVLNVGTAHLGEFGSQDAIAEAKGEIVEAL 235
Query: 243 KLGDVCVLNADDPLVANLTVPRG----VRKVFFGWRRGCDVRL 281
VLNADDP VA + PR R G R D L
Sbjct: 236 PADGWAVLNADDPRVAAM-APRTNAHIARWTTTGAARASDAEL 277
>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
sp. HTCC2170]
gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
sp. HTCC2170]
Length = 425
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 11/210 (5%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
++CTDTR + N FFA+ G +F+ +E+ L ++ + DK + +
Sbjct: 15 LVCTDTRKIKIN--CLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYATSDKTILVKD 72
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
L +L +A + RN +S ++G+TGS GK+TTK ++ L S + GN
Sbjct: 73 ------VLQTLQKLATFHRN-FYSAKVIGLTGSNGKTTTKELVNAVLSS-KYKTIATIGN 124
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ I +IA++EMG + + EI L +A+P+ + N G +HLE GS
Sbjct: 125 LNNHIGVPLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNFGKAHLEGFGS 184
Query: 228 LEDVARAKGEIFQESKLGDVCV-LNADDPL 256
+E V K E++ + LNADDP+
Sbjct: 185 VEGVIEGKSELYDYLLANQKSIFLNADDPI 214
>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
gi|158447394|gb|EDP24389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Parvimonas micra ATCC 33270]
Length = 456
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 124/244 (50%), Gaps = 32/244 (13%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK------- 101
+ TDTR + + F + G+ FD H F + + KG V + WDK
Sbjct: 30 VSTDTREIQVH--NLFIPLVGEKFDGHNF-AFDAVKKGAVATL-------WDKRHPTPYL 79
Query: 102 --GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
G + V+ NTL + +A + + V VG+TGS GK+ TK ++A L+
Sbjct: 80 DAGIIIVD-----NTLQAYQKLASSYLKATGAKV-VGITGSNGKTGTKDILASILKE-NF 132
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V + N NN +GV +++ +D ++ VLEMGM GEI L +ARP+I V+ N+GD
Sbjct: 133 RVHNTAKNLNNEIGVPKTIMEMDLDDEVVVLEMGMERFGEIKTLTNIARPDIAVITNIGD 192
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD----PLVANLTVPRGVRKVFFGWRR 275
SHL LG+ E++ARAK EI + K V + N DD ++ T+ + V K+ G R
Sbjct: 193 SHLLELGTKENIARAKFEILEGLKPDGVFIFNNDDEVLREVIKEYTITQKVIKI--GTRE 250
Query: 276 GCDV 279
DV
Sbjct: 251 DSDV 254
>gi|408377860|ref|ZP_11175459.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Agrobacterium albertimagni AOL15]
gi|407747974|gb|EKF59491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Agrobacterium albertimagni AOL15]
Length = 477
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 128/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT E+ ++ G+ P G+ I D+R + P + FFAI G D H + S +
Sbjct: 4 LWTAREMVVAMGGRPFGNLPEGVTGISIDSRTITPG--EAFFAIKGDRVDGHNYASIAIA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L L + AR+ R ++ VTGS
Sbjct: 62 NGAALLVVSEAKLPALGRLTIPMIVVE-----DVLVGLQKLGMAARD-RTPATVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ LE G V S ++NN GV L+L + V E+GM+ GE+
Sbjct: 116 VGKTTTKEMLRATLEPSG-KVHASVASFNNHWGVPLTLARMPIDTRYGVFELGMNHSGEL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+RM RP++ V+ + +HL + S++++A AK EIF+ G +LN D+P L
Sbjct: 175 GPLSRMVRPDVAVITTIAPAHLGNFASVDEIADAKAEIFEGVVNGGDAILNRDNPYYERL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRL 281
+ +G+ + FG + RL
Sbjct: 235 EQAALAQGIENIHSFGQHAKAEFRL 259
>gi|407793139|ref|ZP_11140174.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina xiamenensis
10-D-4]
gi|407215499|gb|EKE85338.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina xiamenensis
10-D-4]
Length = 472
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 32 IAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG 89
IAE V G+ L+ I + TDTR L + F A+ GQHFDAHEF+ P+ +G V
Sbjct: 9 IAEQVQGR-LQGNDASIEAVSTDTREL--TQGSLFIALRGQHFDAHEFV-PQAIARGAVA 64
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
I + + + + L + V R V VTGS GK++ K M
Sbjct: 65 AIVERPLALDCAQIIVSDCRQALGALGAAVKREVQPR-------CVAVTGSNGKTSVKEM 117
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
+A L G V + GN+NN +G L+L+ + A AV+E+G + GEI ++ +P
Sbjct: 118 LAAILARRG-QVLATQGNFNNDIGAPLTLLRLTHADQYAVIELGANHPGEIAYTTQLVQP 176
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
++ ++ NV +H+E GS+E VARAK EIFQ
Sbjct: 177 DVAIINNVSAAHIEGFGSVEGVARAKTEIFQ 207
>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae 1587]
gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae MZO-2]
gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae 1587]
gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae MZO-2]
Length = 453
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + F A+ G+ FDAH+F+S + G G V ++ + + V +
Sbjct: 27 VSTDSRTIPAEA--LFVALVGERFDAHDFVSQAVAG-GAVALLVERELDAECSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D AV+E+G + GEI + +P++ +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSM 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQAGAVAIVNLD 220
>gi|410666045|ref|YP_006918416.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[Simiduia agarivorans SA1 = DSM 21679]
gi|409028402|gb|AFV00687.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[Simiduia agarivorans SA1 = DSM 21679]
Length = 462
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 105/210 (50%), Gaps = 11/210 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--VQV 106
+C D+R L P F AI G++FD H F+ + G V W K + V
Sbjct: 28 VCIDSRTLKPGD--CFVAIVGENFDGHTFVEAAV----AAGAQSLVVSQAWAKQHAPLPV 81
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA-LALESLGVN-VFQS 164
NT +L A R F G +V +TGS GK+T K M+A + + G + V +
Sbjct: 82 PTWQVANTTEALWQFARIQRE-HFQGPVVAITGSAGKTTVKQMLAAIGQAAFGADAVLFT 140
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +GV+L+L + A AV+EMG SG GEI LA A+P + VV NV H+E
Sbjct: 141 QGNLNNHIGVSLTLFSLTPAHRFAVIEMGASGPGEIAPLAWQAQPSVSVVNNVMPVHVEG 200
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADD 254
GS+ VA K I+ V V+NADD
Sbjct: 201 FGSVAGVADTKSAIYDGLSAEGVAVINADD 230
>gi|365863073|ref|ZP_09402798.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Streptomyces sp. W007]
gi|364007571|gb|EHM28586.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Streptomyces sp. W007]
Length = 473
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 121/258 (46%), Gaps = 18/258 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT-----DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIAE V G+ P + T D+R +AP F A G+ D H+
Sbjct: 5 SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGS--LFAAFAGERVDGHD------ 56
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
Y + V V G + + V L +L R +VG+TGS G
Sbjct: 57 YAQRAVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAVV----ERLGTTVVGLTGSAG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK +IA L+ G V+ + G+ NN +G+ ++ + + VLEMG G G I
Sbjct: 113 KTSTKDLIAQLLQRKGPTVW-TPGSLNNEIGLPVTALTATAETEHLVLEMGARGVGHIHY 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA + P I +VLNVG +HL GS E +ARAKGE+ + VLNADDPLV +
Sbjct: 172 LANLTPPRIGLVLNVGSAHLGEFGSREAIARAKGELVEVLPEDGCAVLNADDPLVRAMAS 231
Query: 263 PRGVRKVFFGWRRGCDVR 280
R + FG DVR
Sbjct: 232 RTKARVLLFGEAPEADVR 249
>gi|383482435|ref|YP_005391349.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia montanensis str. OSU 85-930]
gi|75487918|sp|Q9AKP1.1|MURF_RICMO RecName: Full=Probable
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
6-diaminopimelate--D-alanyl ligase [Rickettsia
montanensis]
gi|378934789|gb|AFC73290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia montanensis str. OSU 85-930]
Length = 449
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 8/194 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I QV N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
MA Y R + + +V +TGSVGK++TK + + L+ VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSKAKFIV-ITGSVGKTSTKEALKVLLQH-DFLVFASRGNFNNKLGMLINLA 145
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EIF
Sbjct: 146 SMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIF 205
Query: 240 QESKLGDVCVLNAD 253
D+ V+NAD
Sbjct: 206 ANFSKNDIAVINAD 219
>gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
fastidiosa subsp. sandyi Ann-1]
Length = 468
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 16/244 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L + + A+ GQ FDAH F + E +G GV+ + V D V V
Sbjct: 27 IGHDTRAL--DVGVLYVALRGQRFDAHLFCA-EAVARGAAGVLVDHVLPELDVPQVVV-- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN----VFQS 164
+T +L +A + R S VL +TGS GK++ K+M+ LE V+ S
Sbjct: 82 ---ADTERALAAIASALQRDRTSFVL-ALTGSNGKTSVKAMLVSILEHAAAQSSTVVYAS 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++I D AV EMG G+I L + P++ +V N+ +HLE
Sbjct: 138 SGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKSGDIGYLTDIVTPDVALVNNIAPAHLER 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVFFGWRRGCDVRL 281
+GSL VAR KGEI+ + G V+N DD VP + FG + DV
Sbjct: 198 MGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPASCAVLRFGLQATADVTA 257
Query: 282 VAAQ 285
+ Q
Sbjct: 258 YSLQ 261
>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 453
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + F A+ G+ FDAH+F+S + G G V ++ + + V +
Sbjct: 27 VSTDSRTIPAEA--LFVALVGERFDAHDFVSQAVAG-GAVALLVERELDAECSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D AV+E+G + GEI + +P++ +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSM 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQAGAVAIVNLD 220
>gi|388457445|ref|ZP_10139740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Fluoribacter dumoffii Tex-KL]
Length = 441
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTD+R L P F AI G+ FD HEFI E +G + + N V +
Sbjct: 23 VCTDSRELEPGN--LFVAIRGERFDGHEFIK-EAETRGAIAAVVNHTIEG-----VSIPQ 74
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ + +L +A R V + +TGS GK+TTK MIA L S + GN
Sbjct: 75 FVVPDPIQALAKIAAAHRQDIHCPV-IALTGSNGKTTTKEMIASILPSPS---HATRGNL 130
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G LS++ ++ AV E+G + GEI + P++ ++ N+ +H+E GS+
Sbjct: 131 NNHIGAPLSVLQLNNQHRYAVFELGANHPGEIAHTVAIVHPDVTLINNIAPAHVEGFGSI 190
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ VARAKGEI Q L V V+N DD
Sbjct: 191 DGVARAKGEIHQGLSLAGVAVVNDDD 216
>gi|383640286|ref|ZP_09952692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingomonas
elodea ATCC 31461]
Length = 461
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 123/272 (45%), Gaps = 16/272 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
S +WT +EIA + +G + D+R + P F A+ G+ D H F+
Sbjct: 2 TSKLWTSDEIAAATDGTAAADFAVSGVAFDSREVGPG--DLFLALKGESTDGHRFLDQAF 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
V+ + + V+ + LN+L A R + ++GVTGSVG
Sbjct: 60 AQGAAGAVVSDATT------YPSVQVADTTDALNAL----GAASRQRSAAKIIGVTGSVG 109
Query: 143 KSTTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
K+ TK + AL+ + +S ++NN GV LSL + R V EMGM+ GE+
Sbjct: 110 KTGTKEALFAALDRIDPGCAHRSVKSYNNHTGVPLSLARMPRESCFGVFEMGMNHAGELA 169
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL- 260
+L R+ RP + +V + +HL S+E +A AKGEIFQ + G ++ D P L
Sbjct: 170 QLTRLVRPHVAIVTAIAPAHLGFFDSVEGIADAKGEIFQGLEPGGTAIVPFDSPYRERLL 229
Query: 261 --TVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
P R V FG G D R V A G
Sbjct: 230 DAARPYASRIVTFGLGEGADYRAVETMRARSG 261
>gi|410633921|ref|ZP_11344561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
arctica BSs20135]
gi|410146581|dbj|GAC21428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
arctica BSs20135]
Length = 469
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 16/227 (7%)
Query: 32 IAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+AE VNG+++ +I TDTR + F A+ G +FD H+FI + KG
Sbjct: 9 VAEQVNGQLIAQQQQNLIIEGVSTDTRSI--QSTDLFLALKGPNFDGHKFIQ-QAEEKGA 65
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V +I +Q + ++ VE TL + + A ++ + VG+TGS GK+T K
Sbjct: 66 VALILSQHVDT-KLPYILVEDT----TLA--LGLLGAAVKAKVAPKTVGITGSSGKTTVK 118
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN+NN +GV ++L+ +++ + AV+EMG + GEI +
Sbjct: 119 EMVAAILSRRG-KVLATNGNFNNELGVPMTLLRLEQQHEFAVIEMGANHLGEIAYTTNLV 177
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ-ESKLGDVCVLNAD 253
+P++ ++N +HLE GSL VARAK EIF+ S+ + ++NAD
Sbjct: 178 KPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLSEEDGLAIVNAD 224
>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
gi|225208244|gb|EEG90598.1| Mur ligase middle domain protein [Coprococcus comes ATCC 27758]
Length = 256
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 122/217 (56%), Gaps = 10/217 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R AP F + G D H FI P++ +G + + + ++ + VE
Sbjct: 31 VAIDSRKAAPGF--LFVPLKGARVDGHTFI-PQVMEQGALATLTEEDPSSLTCPCIHVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L ++A + R + +VG+TGSVGK++TK IA L S NV ++ GN+
Sbjct: 87 ----SCEKALRDIAAFYR-MQLDIKVVGITGSVGKTSTKETIASVL-SRKYNVLKTEGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+ GE+ ELA +++P+I V+ N+G +H+E+LGS
Sbjct: 141 NNGIGLPLTIFNLTEEHEVAVLEMGIDHFGEMHELASISQPDICVITNIGLAHMENLGSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ + +AK E+F + +LN DD ++ + +G
Sbjct: 201 DGILKAKTEVFDHLRPNASVILNGDDDKLSTVAEVQG 237
>gi|422644422|ref|ZP_16707560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 456
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 9/222 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R +AP Q F A+TG FD HE++ ++ GKG VG + + V
Sbjct: 28 VSTDSRGIAPG--QLFVALTGPRFDGHEYLE-QVAGKGAVGALVEHEVEGASLPQLVV-- 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++T +L + RN+ + +TGS GK+T K M+A L + G V + GN
Sbjct: 83 ---LDTRKALAQLGAMNRNAFVDKPVAAMTGSSGKTTVKEMLASILRTRG-TVLATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + D AV+E+G S GEI + +P + ++ N G +H+ G
Sbjct: 139 NNELGVPLTLLELAPEHDAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGP 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF 270
+ + AKGEI + VLN DD + G RKV
Sbjct: 199 DRIVEAKGEILEGLDATGTAVLNLDDKAFPIWQLRAGERKVM 240
>gi|427724885|ref|YP_007072162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 7376]
gi|427356605|gb|AFY39328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 7376]
Length = 446
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 11/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + K F A+ G+ FD H++++ + + +++ + + V
Sbjct: 33 ISTDTREIG--KGDIFVALVGERFDGHDYVTKAVASGAIAVITSHEIDIDVPQWIVD--- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + ++ + R + ++ +TGSVGK++TK +IA L + G NV ++ N+
Sbjct: 88 ----DTLRAYQDIGYWWRK-QVDIPIIAITGSVGKTSTKELIAGVLATQG-NVLKTEANF 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M GKGEI LA +A P I ++ NVG +H+ LGS
Sbjct: 142 NNEIGVPKTLLNLTSDHDFAVIEMAMRGKGEIARLAEIAVPTIGIITNVGTAHIGRLGSR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ +A AK E+ + V +LN DD
Sbjct: 202 QAIAEAKCELLEFMPDTGVAILNGDD 227
>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01]
gi|384042888|ref|YP_005481632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-12]
gi|384051405|ref|YP_005478468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-03]
gi|384054512|ref|YP_005487606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-07]
gi|384057747|ref|YP_005490414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-22]
gi|384060388|ref|YP_005499516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-26]
gi|384063680|ref|YP_005484322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-32]
gi|384119689|ref|YP_005502313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01]
gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-03]
gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-07]
gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-22]
gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-26]
gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-32]
gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-12]
Length = 461
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT E+ + G L + I DTR L F A+ G + D H I+
Sbjct: 2 SLLWTREELETATGGTFLGNTSVSVTGISIDTRTL--THGDLFIALKGDNSDGHAHITTA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L KG ++ + D + V +T+ L +A AR +RF G +V VTGSV
Sbjct: 60 LE-KGAAAILAHSAEGFTDPRILLV-----ADTMLGLQKLAQAAR-ARFKGKVVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L L G+ + ++NN GV L+L + R + E+GM+ GEIL
Sbjct: 113 GKTTTKEMLRLCLAPSGLT-HAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEIL 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
LA+M +P++ V+ +G +HL +GSL+ +A+ K I G + ++ D
Sbjct: 172 PLAKMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVPDD 223
>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 453
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EIA +V G+ LK + + TDTR + F A+ G++FDAH+FI +
Sbjct: 4 LTLAEIARAVGGE-LKGEDISVSSVSTDTRTITSGT--LFIALIGENFDAHDFIEQAVI- 59
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG +I +Q + + + L S+V+ C V +TGS GK+
Sbjct: 60 KGAAALIVSQKLQITTPHILVEDTRIALGKLGSIVHQLCKTPT-------VAITGSCGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
T K M+ L G +F + GN+NN +GV L+L+ D AV+E+G + GEI
Sbjct: 113 TVKEMLTSILSQKGQVLF-TQGNFNNDIGVPLTLLRAKPEDDFAVIELGANHIGEIDYTT 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
R+ P++ +V NV +HLE GS++ V +AKGEI+ K G V V+N D
Sbjct: 172 RLVNPDVALVNNVAAAHLEGFGSIDGVMQAKGEIYNGLKSGAVAVINLD 220
>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
cholerae 12129(1)]
gi|384425348|ref|YP_005634706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
cholerae LMA3984-4]
gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
cholerae 12129(1)]
gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
cholerae LMA3984-4]
Length = 453
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R++ F A+ G+ FDAH+F S + G G V ++ + + V +
Sbjct: 27 VSTDSRVIPAEA--LFVALVGERFDAHDFASQAVTG-GAVALLVERELDAECSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D AV+E+G + GEI + +P++ +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSM 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQAGAVAIVNLD 220
>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Legionella pneumophila str. Paris]
gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
pneumophila 2300/99 Alcoy]
gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila str. Paris]
gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
pneumophila 2300/99 Alcoy]
Length = 445
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P FFAI G+ FD H+FI E KG + N++ + V +
Sbjct: 23 VSIDTRTLKPGN--LFFAIVGERFDGHDFIK-EAEAKGASAAVVNRLIDG-----VHIPQ 74
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
V+ L +L +A A S ++ +TGS GK+T K MIA L + GN
Sbjct: 75 FVVVSPLMALAKIAA-AHRQEMSCPIIALTGSNGKTTVKEMIATILPQPS---HATKGNL 130
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV LS++ +++ AV E+G + GEI + +P++ ++ N+ +H+E GS+
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ VAR+KGEI Q V ++N DD
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDD 216
>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
cholerae TMA 21]
gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
cholerae TMA 21]
Length = 453
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R++ F A+ G+ FDAH+F S + G G V ++ + + V +
Sbjct: 27 VSTDSRVIPAEA--LFVALVGERFDAHDFASQAVTG-GAVALLVERELDAECSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D AV+E+G + GEI + +P++ +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSM 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQAGAVAIVNLD 220
>gi|386288566|ref|ZP_10065706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [gamma
proteobacterium BDW918]
gi|385278121|gb|EIF42093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [gamma
proteobacterium BDW918]
Length = 454
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
ICTD+R + F A++G +FD ++F+ G + + V D +
Sbjct: 28 ICTDSRKV--QAGDLFVALSGDNFDGNQFVGV----AKDAGAVASVVSEATD-----LLP 76
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N V+ + + RF+G LV +TGS GK++TK M+A G V+ + GN
Sbjct: 77 NIRVSDTRRALGLIARENRRRFTGPLVAITGSSGKTSTKEMLAAIFAQCG-EVYATVGNL 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV LSL+ I AV+EMG + +G+I L A P I V+ N +H+E GSL
Sbjct: 136 NNEIGVPLSLLAISAQHRFAVIEMGAAKRGDIHYLCEFAEPTIAVLTNAQHAHIEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
VA KG IF+ G + ++NADD
Sbjct: 196 AAVAETKGGIFRGLAKGGLAIINADD 221
>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
14600]
gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
14600]
Length = 560
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 10/225 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD R + ++ F G+ DAH FI P+ + +G + + + ++VE
Sbjct: 50 VVTDNRQV--ERDFLFIPFVGEKVDAHRFI-PQAFEQGAACSLSEEDLTDPVGPCIRVE- 105
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++ +L+++A Y R + LVG+ GSVGK++TK M+A L S +V ++ GN+
Sbjct: 106 ----SSQRALMDIAAYYRR-QLKLPLVGIIGSVGKTSTKEMVASVL-SRHYSVLKTEGNF 159
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ ++++ I +AV+EMG+ G++ LA +ARP I V+ N+G++HLE + +
Sbjct: 160 NNEIGMPMTVLKIRDHHQVAVVEMGIDNFGQMSALAAVARPNIVVITNIGEAHLEFMKTR 219
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW 273
+ + +K E+F G +LN DD + + G R +F+G
Sbjct: 220 DGILASKTEVFDYLADGASVILNGDDDHLNCIRRAGGARIIFYGL 264
>gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Rhodococcus erythropolis PR4]
Length = 519
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 129/282 (45%), Gaps = 32/282 (11%)
Query: 28 TINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T++ IAE V G + P G + D+R P F A+ G D H+ +
Sbjct: 5 TLSRIAEIVGGTLHDVDDPSTQVTGTVEFDSRKAGPGG--LFLALPGARVDGHDHAEAAV 62
Query: 83 YGK----------GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR------ 126
G ++ V N+ + +E + + + L + AR
Sbjct: 63 AAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARAVVDEL 122
Query: 127 --NSRFSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181
SG LVGVTGS GK++TK +IA L G V G++NN +G+ +++
Sbjct: 123 AAEGSASGGGLTLVGVTGSAGKTSTKDLIAALLRERG-EVVAPPGSFNNELGLPWTVLRA 181
Query: 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ- 240
D VLEM G G + EL ++A P+I VVLNVG +HL GS E +A AKGE+ +
Sbjct: 182 DEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGELVEA 241
Query: 241 --ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
+ G V VLNADD +VA + R VF G CDVR
Sbjct: 242 LPSAADGGVAVLNADDRMVAAMASRTKARIVFVGQSEDCDVR 283
>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
mobilis Nb-231]
gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
mobilis Nb-231]
Length = 453
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 59 NKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSL 118
+ F A+TG D H+++S ++ V + ++ +G G +L
Sbjct: 35 RSGELFVALTGSRADGHDYLSAARTAGAAAALLERAVPEPLPQ-WIVADGRG------TL 87
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
+ C+ R + +V VTGS GK+T K M+A L G + S GN+NN +GV L+L
Sbjct: 88 AALGCWVREHCAATQIVAVTGSNGKTTVKEMLAAILARHGATLATS-GNYNNELGVPLTL 146
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ R AVLE+G S G+I L + RP + V+ N G +HL+ GS+ VAR KGE+
Sbjct: 147 CRLQRRHRYAVLELGASAPGQIRRLTQWVRPSVGVITNAGPAHLDGFGSVAGVARGKGEL 206
Query: 239 FQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ + V+N DD ANL + R R + FG R +VR A A+G L
Sbjct: 207 FETLPDDGIAVINVDDAF-ANLWQRLARPRRCITFGLDRRAEVR--ATTAADGQL 258
>gi|427408254|ref|ZP_18898456.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Sphingobium yanoikuyae ATCC 51230]
gi|425713593|gb|EKU76606.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Sphingobium yanoikuyae ATCC 51230]
Length = 463
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
S +WT EIA++ G + + D+R + F A+ G+ D H+F+ + +
Sbjct: 2 SDLWTSAEIADATGGAVSAPFAVSGVAFDSREV--GAGDLFVAMKGETTDGHKFVD-KAF 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSV 141
+G G I V D V V +S + R SR + ++GVTGSV
Sbjct: 59 AQGAAGAI---VSEPVDYPHVLVA--------DSAAALEALGRASRKRSNAKIIGVTGSV 107
Query: 142 GKSTTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ TK + ALE + V +S ++NN VGV LSL + R V EMGM+ GE+
Sbjct: 108 GKTGTKEALFHALERACPGGVHRSVKSYNNHVGVPLSLARMPRDAAYGVFEMGMNHAGEL 167
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R RP + +V + +H+E G+ E +A AK EIF+ + G V+ D P VA L
Sbjct: 168 AALTRQVRPNVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATL 227
>gi|410614112|ref|ZP_11325163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
psychrophila 170]
gi|410166383|dbj|GAC39052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
psychrophila 170]
Length = 469
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 32 IAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+AE VNG+++ +I TDTR + P F A+ G +FD H+F+ + KG
Sbjct: 9 VAEQVNGQLIAQHKQDLIIKGVSTDTRSILPT--DLFLALQGPNFDGHKFVK-QAEDKGA 65
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
VG+I ++ + + + L + V + VG+TGS GK+T +
Sbjct: 66 VGLILSRKVETRLPYILVADTTIALGLLGAAVKAKVAPKT-------VGITGSSGKTTVR 118
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN NN +GV ++L+ +++ + AV+EMG + GEI + +
Sbjct: 119 EMVAAILSHRG-KVLATKGNLNNDLGVPMTLLRLEQQHEFAVIEMGANHLGEIAYTSNLV 177
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ-ESKLGDVCVLNAD 253
+P++ ++N +HLE GSL VARAK EIF+ S+ + V+NAD
Sbjct: 178 KPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLSEKEGLAVVNAD 224
>gi|374319529|ref|YP_005066028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia slovaca 13-B]
gi|360042078|gb|AEV92460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia slovaca 13-B]
Length = 450
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLLQNDFLVFASRGNFNNKLGMLINL 145
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 146 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 205
Query: 239 FQESKLGDVCVLNAD 253
F D+ V+NAD
Sbjct: 206 FANFSKNDIAVINAD 220
>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase [Kangiella
koreensis DSM 16069]
gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
DSM 16069]
Length = 465
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 115/205 (56%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R+ ++ F A+ G++FD H+F+ ++ + V +N + V
Sbjct: 27 VITDSRV--DCRDALFIALKGENFDGHQFVEKAKLQGAKALLVEHLVESNLPQVIVS--- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L +A Y R+ + + +++G+TGS GK+T K M+A L G N+ + GN+
Sbjct: 82 ----DTEKALGLVAKYVRD-QVNPLVIGITGSAGKTTVKEMVASILRQKG-NLLATQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + AV+EMG + GEI A +A+P++ V+ NV +H+E GS+
Sbjct: 136 NNHIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCASLAKPDVSVINNVEAAHIEGFGSV 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
E VA+AK EI+Q V+N D
Sbjct: 196 EGVAKAKSEIYQALSEEGTAVINLD 220
>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
proteobacterium NOR51-B]
gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
proteobacterium NOR51-B]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 16/240 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + + F A+ G+ D H++++ G V+ V Q++
Sbjct: 30 VAIDSRTV--SAGDLFVALRGERVDGHDYVAAAHAGGAVAAVVEEPVAVE----IPQLQV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+V+ L+ + M ++ GVLVG+TGS GK++ K+++A L G + S GN
Sbjct: 84 AASVDVLSLIAGMV----REQYRGVLVGITGSAGKTSAKTLLASVLAEAGPTLATS-GNQ 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L +D A++ AV+EMG G+I L +ARP I +LN +HL + S+
Sbjct: 139 NNEIGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCAVARPGITALLNAAPAHLANYDSV 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
+ +AR KGEI GD+ V N D + P VR FG +G DVR + Q
Sbjct: 199 DAIARTKGEILAALGSGDLGVFNGDQRYADVWREMAAPAEVRT--FGMSKGVDVRAINIQ 256
>gi|389783817|ref|ZP_10195067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter spathiphylli B39]
gi|388434249|gb|EIL91197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter spathiphylli B39]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F AI G+ D H++++ ++ +V ++ + V G
Sbjct: 25 VAIDTRKLKPG--DLFVAIKGERADGHDYLAEAAARGAVAAMVTRKVDSDLPQVLVDDAG 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L + R+ R +VG+TGS GK+T K+++A L G S GN+
Sbjct: 83 L----ALGDLASAVRAQRDVR----VVGITGSNGKTTVKTLVASILSRHG-RTHVSGGNY 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ LSL+ + + AV EMG G+I LA +ARP+I +V + +HLE +GS+
Sbjct: 134 NNELGLPLSLLAMPADTEYAVFEMGAGKPGDIAYLAAIARPDIGLVTLIAPAHLERMGSI 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
E VA KG ++Q + ++NADD + G R+V FG DV
Sbjct: 194 EGVAETKGALYQALPVDGTAIINADDAFASFFGGLAGSRQVLRFGLEHRADV 245
>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Legionella pneumophila str. Lens]
gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila str. Lens]
Length = 445
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P FFAI G+ FD H+FI E KG + N++ + V +
Sbjct: 23 VSIDTRTLKPGN--LFFAIVGERFDGHDFIK-EAEAKGASAAVVNRLIDG-----VHIPQ 74
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
V+ L +L +A A S ++ +TGS GK+T K MIA L + GN
Sbjct: 75 FVVVSPLMALAKIAA-AHRQEMSCPIIALTGSNGKTTVKEMIATILPQPS---HATKGNL 130
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV LS++ +++ AV E+G + GEI + +P++ ++ N+ +H+E GS+
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ VAR+KGEI Q V ++N DD
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDD 216
>gi|390954455|ref|YP_006418213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aequorivita sublithincola DSM 14238]
gi|390420441|gb|AFL81198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aequorivita sublithincola DSM 14238]
Length = 426
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 19/239 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG---FVQ 105
+CTDTR + P FFA+ G +F+ + F + E KG VI +++ + + G FV
Sbjct: 16 VCTDTRKIIPK--CIFFALKGDNFNGNLF-TQEALDKGAFKVIVDEIAFHKNTGETIFVD 72
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
N L +L +A + R S ++ +TGS GK+T+K +I L S +
Sbjct: 73 -------NVLLTLQQLAQFHR-EFLSLPIISLTGSNGKTTSKELINAVL-SQKFKTVATP 123
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +GV L+L+ +++ ++ ++EMG + GEI L+ +A P+ + N G +HLE
Sbjct: 124 GNLNNHIGVPLTLLSMNKETELGIVEMGANHLGEIKMLSEIAEPDYGYITNFGKAHLEGF 183
Query: 226 GSLEDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGW-RRGCDVRLV 282
GS+E V + K E++Q K+ + + NA+DP L+ G+ ++ FG + DV L+
Sbjct: 184 GSIEGVVQGKTELYQFLKVHNKKIFVNANDP--KQLSNSDGIERITFGTPQSDFDVNLL 240
>gi|345877694|ref|ZP_08829434.1| cell division protein ftsW [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344225297|gb|EGV51660.1| cell division protein ftsW [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 454
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 20/262 (7%)
Query: 27 WTINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFI-SPELYG 84
+++ + AE ++G + G + TDTR L P + A+ G +FD HEF+ EL G
Sbjct: 4 FSLYQAAEQIDGMLFGMERSFGAVSTDTRTLQPGD--LYVALKGPNFDGHEFLYEAELRG 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
++ + + V +T +L +A R + F LV VTGS GK+
Sbjct: 62 -AVAALVSERTTAHLPLILVD-------DTRLALGRLAAAWRQA-FPVPLVAVTGSNGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD--IAVLEMGMSGKGEILE 202
T K M+A L G V + GN NN +G+ L+L+ R D AV+EMG + GEI
Sbjct: 113 TVKEMLAAILSQRG-KVLATQGNLNNDIGMPLTLL---RQQDEAFAVIEMGANHPGEIAV 168
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-LT 261
L+ +ARP++ ++ N G +HLE G+L+ VA+AKGEI Q VLN DD
Sbjct: 169 LSGIARPDVALITNAGAAHLEGFGTLDGVAKAKGEIIQGLTDDGTLVLNRDDAYFPFWQK 228
Query: 262 VPRGVRKVFFGWRRGCDVRLVA 283
G R + FG +RL A
Sbjct: 229 QAEGRRLLTFGTHPEAQLRLDA 250
>gi|399046953|ref|ZP_10739141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. CF112]
gi|398055103|gb|EJL47195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. CF112]
Length = 460
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV 95
+L G P ++ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 LLLAGSPHLVLSSVHFDTRQL--KAGSLFVALTGGVRDGHDFLLQAAEQGAVAALVSNQ- 72
Query: 96 CNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
G G VN TL +A R FS + +TGS+GK+T K ++A L
Sbjct: 73 -EKIPAGLPDEFGLILVNDTLRGFQKLAAAYRKD-FSIPHIAITGSIGKTTVKDIVAHVL 130
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
E+ V+++Y N NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V+
Sbjct: 131 EARS-PVYKTYKNLNNHLGVPLSLLQMEPEHQAAVLELGMNHAGEIDLLASLVKPQISVI 189
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
+G+SHLE G+ E +A AK E+ + + +LN D + + +++ +
Sbjct: 190 TYIGESHLEFFGTREKIALAKAELLPHTAPDGLVLLNKDSEYLPRIAHLYSGEIMYYSVK 249
Query: 275 RGCDV 279
CD+
Sbjct: 250 EPCDL 254
>gi|418474496|ref|ZP_13043990.1| 6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces
coelicoflavus ZG0656]
gi|371544902|gb|EHN73568.1| 6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces
coelicoflavus ZG0656]
Length = 476
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 123/263 (46%), Gaps = 25/263 (9%)
Query: 28 TINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIAE V G++ G + D+R P F A G+ D H+F + ++
Sbjct: 5 SLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPG--SLFVAFVGERVDGHDFAA-QV 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGS 140
G V+G++ G + + + AR+ R LV +TGS
Sbjct: 62 VEAGAAAVLGSRPV-----------GVPAIVVDDVQAALGALARHVVRRLGTTLVALTGS 110
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK +IA L VF + G+ NN VG+ L+ + VLEMG G G I
Sbjct: 111 AGKTSTKDLIAQVLRRKAPTVF-TPGSMNNEVGLPLTALTATDETKFLVLEMGARGIGHI 169
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE---SKLGDVCVLNADDPLV 257
L + P+I +VLNVG +H+ G E +ARAKGE+ + ++ G VLNADDPLV
Sbjct: 170 RYLCELTPPKIGLVLNVGSAHIGEFGGREQIARAKGELVEALPPAEEGGTAVLNADDPLV 229
Query: 258 ANLTVPRGVRKVFFGWRRGCDVR 280
+ + + FG DVR
Sbjct: 230 RAMASRTKAKVILFGESGEADVR 252
>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
fastidiosa 9a5c]
gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
fastidiosa 9a5c]
Length = 468
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 119/244 (48%), Gaps = 16/244 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L + + A+ GQ FDAH F + E +G GV+ + V D V V
Sbjct: 27 IGHDTRAL--DVGVLYVALRGQRFDAHLFCA-EAVARGAAGVLVDHVLPELDVPQVVV-- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN----VFQS 164
+T +L +A + R S VL +TGS GK++ K+M+ LE V+ +
Sbjct: 82 ---ADTERALAAIASALQRDRTSFVL-ALTGSNGKTSVKAMLVSILEHAAAQSSTVVYAN 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++I D AV EMG G+I L + P++ +V N+ +HLE
Sbjct: 138 SGNRNNEIGLPLAVIAAPDDADFAVYEMGAGKLGDIGYLTDIVTPDVALVNNIAPAHLER 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVFFGWRRGCDVRL 281
+GSL VAR KGEI+ + G V+N DD VP G + FG + D+
Sbjct: 198 MGSLLGVARTKGEIYAALRPGGTAVINMDDAFALWFEQQCVPAGCAVLRFGLQATADITA 257
Query: 282 VAAQ 285
+ Q
Sbjct: 258 YSLQ 261
>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Epulopiscium sp. 'N.t. morphotype B']
Length = 458
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 120/209 (57%), Gaps = 8/209 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R NK F + G+ FD H++I ++ G + + ++ ++ + + +
Sbjct: 30 IFTDSR-QKVNKG-LFVPLIGEKFDGHDYID-DVKAMGALATLTSKKNDSVHQDLITIAV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L+++A Y +S+ ++ +TGSVGK+TTK M+A LE+ + V ++ GN+
Sbjct: 87 E---DTQKALLDVARY-YSSKVDRPIIAITGSVGKTTTKEMVAAVLETT-LKVHKTVGNY 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++ + ++V+EMGM+ GE+ L + +P+ V+ N+G +H+E L S
Sbjct: 142 NNEIGVPKTMFALSEDDQVSVIEMGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV 257
E + +AK EI + K ++N D+PL+
Sbjct: 202 EGILKAKLEILEGLKPEGTVIINGDEPLL 230
>gi|406660612|ref|ZP_11068742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cecembia lonarensis LW9]
gi|405555531|gb|EKB50547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cecembia lonarensis LW9]
Length = 432
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 121/215 (56%), Gaps = 13/215 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
+ TDTR + K+ FFA+ G +F+A++F + L G V + +V D + V+
Sbjct: 16 VSTDTRKI--EKDNIFFALKGPNFNANDFAAQALETGASMVVIDEERVIPQEDSRYFLVD 73
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L +L +A Y R + + ++G+TGS GK+T+K ++ L+ + GN
Sbjct: 74 -----DVLLALQKLANYHRR-QLTIPIIGLTGSNGKTTSKELLHAVLKQ-KFRTSATVGN 126
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ I + +IA++EMG + +G+I EL +A P + N+G +HLE +G
Sbjct: 127 LNNHIGVPLTLLAIPKDTEIAIIEMGANKQGDIKELCDIAEPTHGFITNIGKAHLEGMGG 186
Query: 228 LEDVARAKGEIFQE--SKLGDVCVLNADDPLVANL 260
E V + K E+FQ K G V +N+ DP+++N+
Sbjct: 187 PEGVLKTKTELFQHLREKKG-VVFINSQDPILSNM 220
>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae MZO-3]
gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae 623-39]
gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae MZO-3]
gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
cholerae 623-39]
Length = 453
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R++ F A+ G+ FDAH+F S + G G + ++ + + V +
Sbjct: 27 VSTDSRVIPAEA--LFVALVGERFDAHDFASQAVTG-GAIALLVQRELDAECSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D AV+E+G + GEI + +P++ +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSM 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQAGAVAIVNLD 220
>gi|345866567|ref|ZP_08818593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Bizionia argentinensis JUB59]
gi|344049004|gb|EGV44602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Bizionia argentinensis JUB59]
Length = 430
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 15/229 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR + K+ FFA+ G +FD + F L KG +I + D + VE
Sbjct: 16 VCTDTRKIT--KDCLFFALKGDNFDGNTFTQQAL-EKGAKYIIIDNDAYYKDSQTILVE- 71
Query: 109 NGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L++L N+A Y R+ + G+ ++ +TGS GK+TTK +I L S + GN
Sbjct: 72 ----DVLSTLQNLAAYHRD--YLGIPIISLTGSNGKTTTKELINAVL-SEKYQTTATIGN 124
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ + + +I V+EMG + GEI L +A+P+ + N G +HLE G
Sbjct: 125 LNNHIGVPLTLLSMTKDTEIGVVEMGANHLGEIAFLCEIAKPDYGYITNFGKAHLEGFGG 184
Query: 228 LEDVARAKGEIFQESKLGDVCV-LNADDPLVANLTVPRGVRKVFFGWRR 275
+E V + K E++ D + LN DD + T + V+ + FG +
Sbjct: 185 IEGVIKGKSELYDYLLSHDKQIFLNTDDTIQVAKT--KSVKTISFGQKE 231
>gi|408785690|ref|ZP_11197432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium lupini HPC(L)]
gi|408488409|gb|EKJ96721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium lupini HPC(L)]
Length = 477
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 18/284 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + P + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTVKPGEA--FFAIKGDRVDGHDYTSFAVA 61
Query: 84 -GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + V ++ + VE + L +L +A AR R S ++ VTGS
Sbjct: 62 NGAGLLVVAEAKLPALGRLTVPMIVVE-----DVLAALGKLAIAARQ-RTSARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL +L V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQAL-ALSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFNNIEEIAAAKAEIFEGVEQGGSVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+G+ + FG D RL + G + +L E
Sbjct: 235 EEAAQEQGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGE 278
>gi|429884937|ref|ZP_19366542.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
cholerae PS15]
gi|429228269|gb|EKY34197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
cholerae PS15]
Length = 453
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + F A+ G+ FDAH+F S + G G V ++ + + V +
Sbjct: 27 VSTDSRTIPAEA--LFVALVGERFDAHDFASQAVTG-GAVALLVERELDAECSQLVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L S V+ C V +TGS GK+T K M+A L G V + GN+
Sbjct: 84 KQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVKEMVASILSQKG-QVLYTQGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D AV+E+G + GEI + +P+I +V NV +HLE GS+
Sbjct: 136 NNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTALVKPDIALVNNVAAAHLEGFGSM 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
+ V RAKGEI+Q + G V ++N D
Sbjct: 196 DGVKRAKGEIYQGLQTGAVAIVNLD 220
>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
[Rickettsia prowazekii str. Madrid E]
gi|383487416|ref|YP_005405096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. GvV257]
gi|383487995|ref|YP_005405674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. Chernikova]
gi|383488840|ref|YP_005406518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. Katsinyian]
gi|383489681|ref|YP_005407358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. Dachau]
gi|383499820|ref|YP_005413181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. BuV67-CWPP]
gi|383500657|ref|YP_005414017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. RpGvF24]
gi|386082454|ref|YP_005999031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
prowazekii str. Rp22]
gi|6225736|sp|O05953.2|MURF_RICPR RecName: Full=Probable
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
[Rickettsia prowazekii str. Madrid E]
gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
prowazekii str. Rp22]
gi|380757781|gb|AFE53018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. GvV257]
gi|380758354|gb|AFE53590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. RpGvF24]
gi|380760874|gb|AFE49396.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. Chernikova]
gi|380761719|gb|AFE50240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. Katsinyian]
gi|380762566|gb|AFE51086.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. BuV67-CWPP]
gi|380763404|gb|AFE51923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia prowazekii str. Dachau]
Length = 449
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 24/247 (9%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H++I + KG VI ++ DK + + N + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYIQDAI-DKGATAVIVSKQVEINDKDKIILVNN----SFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN +G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQHDFI-VFASRGNFNNYLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ +GEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHQGEISELVQILKPNIAMINNISEAHLEFFHSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ ++NA + ++ NL++ FG +L+ + L
Sbjct: 205 FKNFSKNDIAIINASNNCYNKILSILKNLSITNIYS---FGHSSKASAKLILYKT----L 257
Query: 292 GVQVVLE 298
G QV L+
Sbjct: 258 GEQVHLQ 264
>gi|397665208|ref|YP_006506746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila]
gi|395128619|emb|CCD06837.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila]
Length = 445
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 12/206 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P FFAI G+ FD H+FI E KG + N+ + V +
Sbjct: 23 VSIDTRTLKPGN--LFFAIVGERFDGHDFIK-EAEAKGASAAVVNRAIDG-----VHIPQ 74
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
V+ L +L +A A S ++ +TGS GK+T K MIA L + GN
Sbjct: 75 FVVVSPLMALAKIAA-AHRQEMSCPIIALTGSNGKTTVKEMIATILPQPS---HATKGNL 130
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV LS++ +++ AV E+G + GEI + +P++ ++ N+ +H+E GS+
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD 254
+ VAR+KGEI Q V ++N DD
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDD 216
>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium cylindroides T2-87]
Length = 453
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 135/259 (52%), Gaps = 23/259 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ TI EIA+ +N ++ +I D+R + +N + + GQ D H FI +
Sbjct: 3 VKTIQEIADMLNCDLVGEDKTSLIQGVGIDSRQIT--ENALYIPLIGQRADGHTFIDS-V 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVT 138
KG + W K + +TL +L N+A N+ S +++GVT
Sbjct: 60 IQKGVKATL-------WQKDHTPYPEDITCILVDDTLEALQNLAKAYLNT-LSCLVIGVT 111
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++ K M+ ++ S ++ GN NN +G+ L+++ +D+ V++A+LEMGM KG
Sbjct: 112 GSNGKTSCKDML-YSIFSQEKKTQKTQGNRNNEIGLPLTVLDLDKDVEVAILEMGMENKG 170
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +ARP++ ++ +G +H+E+LG + +A+AK EI + K G + + + + P +
Sbjct: 171 EIDFLTHIARPDVSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFLYDKESPEIQ 230
Query: 259 ----NLTVPRGVRKVFFGW 273
+ + R V FG+
Sbjct: 231 ECLLEMDIDPSKRLVSFGF 249
>gi|334129349|ref|ZP_08503154.1| LOW QUALITY PROTEIN: Putative murein precusor biosynthesis
bifunctional protein
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase MurF [Methyloversatilis
universalis FAM5]
gi|333445575|gb|EGK73516.1| LOW QUALITY PROTEIN: Putative murein precusor biosynthesis
bifunctional protein
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase MurF [Methyloversatilis
universalis FAM5]
Length = 465
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 22/244 (9%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +++A + G + GP I TD+R A F A+ G+ FDAH+FI+
Sbjct: 2 SALWTASDVAAACGGTLS--GPDVDIRGFSTDSR--AVKTGDLFVALRGERFDAHDFIAD 57
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
VI + C + ++V +T +L ++A A SRF+ L+GVTGS
Sbjct: 58 VQAAGAAAAVIAHD-CTHAAGTLIRV-----ADTRIALGDIA-RAWRSRFTLPLIGVTGS 110
Query: 141 VGKSTTKSMIALALESLGVNV--------FQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
GK+T K MIA L + +V + GN NN +GV L L G+ +AV+EM
Sbjct: 111 NGKTTVKEMIAAILRAHAASVGWQPDSAVLATRGNLNNDIGVPLMLFGLRDTHRMAVIEM 170
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ GEI LA MA+P + +V N HLE + S+ +VAR G++F V V+N
Sbjct: 171 GMNHPGEIAWLAGMAKPTVALVNNAQREHLEFMNSVAEVARENGDVFDALGADGVAVVNG 230
Query: 253 DDPL 256
DD
Sbjct: 231 DDDF 234
>gi|406025682|ref|YP_006705983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
gi|404433281|emb|CCM10563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
Length = 436
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 12/218 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R AP FFAI G HF+ + F + L C +I + ++ V+
Sbjct: 17 VTTDSRYFAPGA--LFFAIRGPHFNGNAFAAEALAKGACYVIIDDPAYAKPSSAYILVK- 73
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVL--VGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
++L +L+ +A Y R +++S + + +TGS GK+TTK +I L + V + G
Sbjct: 74 ----DSLATLIQLAGYHR-AQYSPLFPVIAITGSYGKTTTKELIYHTLRTTYRTV-ATKG 127
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N N +GVAL+++ + + IAV+EMG + G+I +ARP ++ +G +HLE G
Sbjct: 128 NLNTAIGVALTILSLQQNTQIAVIEMGATQLGDITLCCNLARPTHGMITAIGAAHLEGFG 187
Query: 227 SLEDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVP 263
S++ V + KGE++ G LN PL++ ++ P
Sbjct: 188 SIKGVIQGKGELYDYLYNTGGTVFLNTLMPLLSRISRP 225
>gi|418939987|ref|ZP_13493367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
sp. PDO1-076]
gi|375053283|gb|EHS49682.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
sp. PDO1-076]
Length = 477
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 18/265 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT ++ ++ G+ P GI I D+R + P + FFAI G D H++ S +
Sbjct: 4 LWTSRDMVAAMAGRPFGNLPEGITGISIDSRTITPG--EAFFAIKGDRVDGHDYASIAIA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L L + AR+ R ++ VTGS
Sbjct: 62 NGASLLVVNEAKLPALGRLTVPMIVVE-----DVLIGLEKLGQAARD-RTPATVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ +ALE G NV + ++NN GV L+L + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRVALEPSG-NVHAAVASFNNHWGVPLTLARMPMDTRYGVFEIGMNHPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA+M RP++ ++ + +HL + S+E++A AK EIF G +LN D+ L
Sbjct: 175 GPLAQMVRPDVAIITTIAPAHLGNFSSVEEIAAAKAEIFDGLARGGDVILNRDNAYFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRL 281
GV + FG + RL
Sbjct: 235 EQAAYAAGVENIHTFGQHAKAEFRL 259
>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
HTCC2503]
gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
HTCC2503]
Length = 478
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 25/297 (8%)
Query: 22 SNSPIWTINEIAESV--------NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFD 73
+++P+WT+ EI + G+ L P + DTR LA K F A++G D
Sbjct: 2 TDAPLWTVREIIAATGAALRGAGEGETLGERPVYGLSFDTRSLA--KGDLFIALSGAR-D 58
Query: 74 AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
H+F ++ ++ + + + G + L +L ++A AR F G
Sbjct: 59 GHDFAQAAADKGAAAALLTHRPADLSEA----LPGLMVDDPLRALEDLARAARQRCF-GA 113
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
LV VTGSVGK+TTK M+ AL LG V + ++NN +GV +SL + + V E+G
Sbjct: 114 LVAVTGSVGKTTTKEMLRAALSPLG-EVHAAAKSFNNHIGVPISLASLPQQAAFGVFEIG 172
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
M+ GEI L + RP + ++ +V HLE+ S++ +A AK EI + G VL +D
Sbjct: 173 MNHAGEITPLVDLVRPHVAIITSVAAVHLENFSSVDGIADAKAEILSGIRRGGAAVLPSD 232
Query: 254 DPLVANLTVPR----GVRKVF-FGWRRGCDVRL--VAAQVANGGLGVQVVLEKEREM 303
+P L V R GV ++ FG+ G + A + GG ++ + ER +
Sbjct: 233 NPYYERL-VSRARECGVERIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGERHV 288
>gi|424910835|ref|ZP_18334212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846866|gb|EJA99388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 477
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 137/284 (48%), Gaps = 18/284 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + P + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTVKPGEA--FFAIKGDRVDGHDYTSFAVA 61
Query: 84 -GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + V ++ + VE + L +L +A AR R S ++ VTGS
Sbjct: 62 NGAGLLVVAEAKLPALGRLTVPMIVVE-----DVLAALGKLAIAARQ-RTSARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL G V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQALAPSG-RVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFNNIEEIAAAKAEIFEGVEQGGSVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+G+ + FG D RL + G + +L E
Sbjct: 235 EEAAQEQGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGE 278
>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodopseudomonas palustris DX-1]
gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodopseudomonas palustris DX-1]
Length = 479
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 128/269 (47%), Gaps = 17/269 (6%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
S P+WT + +AE++ P + I D+R LAP +FAI G D H+F++
Sbjct: 2 SKEPLWTSDAMAEAMAATRSGTLPRDVFGISIDSRTLAPG--DAYFAIRGDVHDGHDFVA 59
Query: 80 PELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
L + V+ + + D + V+ + L L + AR SR S ++ V
Sbjct: 60 AALNAGAALAVVEKAQRDKFAADAPLLVVD-----DVLEGLRRLGIAAR-SRLSAKVIAV 113
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK++TK + L + G S ++NN GV L+L V AV E+GM+
Sbjct: 114 TGSVGKTSTKEGLRSVLGAQG-PTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHA 172
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-- 255
GEI L +M RP + ++ V HLE +E +A AK EIF + G + +LN D P
Sbjct: 173 GEIEPLVKMVRPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMF 232
Query: 256 --LVANLTVPRGVRKVFFGWRRGCDVRLV 282
L AN R V FG D RL+
Sbjct: 233 DRLSANALRANVGRIVTFGTDPAADARLL 261
>gi|433545493|ref|ZP_20501846.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
[Brevibacillus agri BAB-2500]
gi|432183148|gb|ELK40696.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
[Brevibacillus agri BAB-2500]
Length = 460
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV 95
+L G P ++ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 LLLAGSPHLVLSSVHFDTRQL--KAGSLFVALTGGVRDGHDFLLQAAEQGAVAALVSNQ- 72
Query: 96 CNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
G G VN TL +A R FS + +TGS+GK+T K ++A L
Sbjct: 73 -EKIPAGLPDEFGLILVNDTLRGFQKLAAAYRKD-FSIPHIAITGSIGKTTVKDIVAHVL 130
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
E+ V+++Y N NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V+
Sbjct: 131 EARS-PVYKTYKNLNNHLGVPLSLLQMEPEHQAAVLELGMNHAGEIDLLASLVKPQISVI 189
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
+G+SHLE G+ E +A AK E+ + + +LN D + + +++ +
Sbjct: 190 TYIGESHLEFFGTREKIALAKAELLPHTAPDGLVLLNKDSEYLPRIAHLYSGEIMYYSVK 249
Query: 275 RGCDV 279
CD+
Sbjct: 250 EPCDL 254
>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
baltica ATCC 49814]
gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
baltica ATCC 49814]
Length = 478
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 22/283 (7%)
Query: 23 NSPIWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
N +WT EIA + G++ W GI D+R +A K F A+ D HE++S
Sbjct: 2 NKSLWTSKEIAAATKGEMTGDWKVSGI-SIDSREVA--KGDLFVALKDLR-DGHEYVSSA 57
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ KG G + + C D V V+ NTL++L N+ AR +R + +TGSV
Sbjct: 58 IE-KGAAGALISSDCG--DVPCVTVD-----NTLHALENLGLAAR-ARSKAIHAAITGSV 108
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++ K MIA S G + ++NN GV L+L + R A+ E+GM+ GEI
Sbjct: 109 GKTSVKEMIAQIFRSKG-KAHWNVKSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIA 167
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+RM RP+I +V + +HLE +G++E VA K +IF + V +L +D +
Sbjct: 168 PRSRMVRPQIALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEPNGVAILPREDDFFDYMK 227
Query: 262 V------PRGVRKVFFGWRRGCDVRLVAAQV-ANGGLGVQVVL 297
P F G + D RL++ + NG G +L
Sbjct: 228 ARVFDCQPTASLLSFGGAQSEADARLISFEPEGNGSQGTADIL 270
>gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
14672]
gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
14672]
Length = 476
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 122/263 (46%), Gaps = 25/263 (9%)
Query: 28 TINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++ EIAE V G+ P G + D+R P F A G+ D H+F + +
Sbjct: 5 SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGS--LFVAFVGERVDGHDFAA-RV 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGS 140
G V+ ++ G + + + AR+ R LV +TGS
Sbjct: 62 VEAGAAAVLASRPV-----------GVPAIVVEDVQAALGALARHVVGRLGTTLVALTGS 110
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK +IA L+ G VF + G+ NN +G+ L+ + VLEMG G G I
Sbjct: 111 AGKTSTKDLIAQVLQRHGPTVF-TPGSLNNEIGLPLTALTATEETKFLVLEMGARGIGHI 169
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ---ESKLGDVCVLNADDPLV 257
L + P + +VLNVG +H+ G E +A+AKGE+ + ++ G +LNADDPLV
Sbjct: 170 RYLTGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLV 229
Query: 258 ANLTVPRGVRKVFFGWRRGCDVR 280
+ + + FG DVR
Sbjct: 230 RAMASRTKAKVILFGESDEADVR 252
>gi|452752899|ref|ZP_21952638.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [alpha
proteobacterium JLT2015]
gi|451959721|gb|EMD82138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [alpha
proteobacterium JLT2015]
Length = 455
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 134/284 (47%), Gaps = 16/284 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+P+WT EIA + G + D+R + + F A+ G+ D H F++ +
Sbjct: 2 TPLWTSEEIAAATGGTASASFSADSVTFDSREVI--GGELFVAMRGEQMDGHSFVA-SAF 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G G + V D V+V + L +L + AR + + VGVTGSVGK
Sbjct: 59 ERGAAGAL---VSEAVDGPHVRV-----ADGLTALQALGRAARARTDARI-VGVTGSVGK 109
Query: 144 STTKSMIALAL-ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
++ K + LAL E S ++NN GV LSL + V EMGM+ GE+
Sbjct: 110 TSVKEALRLALSECAPERTHASVKSYNNHTGVPLSLARMPAGSAYGVFEMGMNHAGELSA 169
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
L R+ RP + +V + +H+E S E +A AKGEIF+ + G V VL D P A L
Sbjct: 170 LTRLVRPHVAIVTAIAPAHMEFFDSEEAIADAKGEIFEGLEPGGVAVLPLDSPHFARLRD 229
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303
R + FG +G DVRL ++ + V + +E E+
Sbjct: 230 KAAQHASRILSFGTGKGADVRLTSSADVGAVTALTVAIGEEEEV 273
>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, partial
[Staphylococcus caprae C87]
gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus caprae C87]
Length = 378
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 115/201 (57%), Gaps = 11/201 (5%)
Query: 60 KNQWFFAITGQHFDAHEFISPELY-GKGC-VGVIGNQVCNNWDKGFVQVEGNGNVNTLNS 117
K+ F G++ D H F++ L G G G ++ + + + VE +TL +
Sbjct: 38 KDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDIEGPIIWVE-----DTLKA 92
Query: 118 LVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
L ++A Y + + ++ VTGS GK+TTK MI L + V ++ GN+NN +G+ L
Sbjct: 93 LQDLAKAYLK--YVNPKVIAVTGSNGKTTTKDMIESVL-TTEFKVKKTQGNYNNEIGMPL 149
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+++ +D +I++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LGS E +A+AK
Sbjct: 150 TILDLDEDTEISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSREGIAKAKS 209
Query: 237 EIFQESKLGDVCVLNADDPLV 257
EI K + + D+PL+
Sbjct: 210 EITIGLKENGTFIYDGDEPLL 230
>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[uncultured Termite group 1 bacterium phylotype Rs-D17]
gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[uncultured Termite group 1 bacterium phylotype Rs-D17]
Length = 466
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 22/264 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ + ++ V GK +K G PG + D+R + K + +FA+ G +D H+FI E
Sbjct: 4 FYLKDLMRVVGGKFVK-GNPGFSANGVSIDSRTI--KKGEVYFAMQGARYDGHDFIK-EA 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQV--EGNGNVNTLNSLVNMACYARNSR--FSGV-LVGV 137
KG V VC+ FV+ + + T ++L+++ +A++ R F + + G+
Sbjct: 60 INKGAAAV----VCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK ++ G + GN+NNR+G+ LS+ + ++ AV EMG S +
Sbjct: 116 TGSNGKTTTKEILVSIFNRKG-RTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLR 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L+ + P+ ++ NVG SHLE+ S + V K +F K V+N DD +
Sbjct: 175 GEIKILSDILNPDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEFL 234
Query: 258 ANLTVPRGV-RKVF-FGWRRGCDV 279
+T P+ V RK+ F DV
Sbjct: 235 --MTAPQYVSRKIIAFALDVAADV 256
>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 492
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 27/262 (10%)
Query: 27 WTINEIAESVNGKILKWGPPGI-------ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
++ EI + G +G P + + D+R K+ F I G D H FI
Sbjct: 4 MSLQEITTACGGTY--YGEPSLLTREVSGVTIDSR--KAGKDFLFVPIKGARVDGHSFI- 58
Query: 80 PELYGKGCVGVIGNQ-VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGV 137
P++ +G + + + +++ V + +L ++A + R R G+ +VG+
Sbjct: 59 PQVMEQGALCTLSEHPLSDSFPYILVS-------SCAQALKDIAEHYR--RALGIKVVGI 109
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
+GSVGK++TK MIA LE +V ++ GN+NN +G+ L++ I + ++AVLEMG+S
Sbjct: 110 SGSVGKTSTKEMIASILEQ-KYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDF 168
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
E+ LA++A+P+I V+ N+G HLE+LG + V +AK E+F + G +LN DD +
Sbjct: 169 QEMNRLAKVAQPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRPGASIILNGDDDKL 228
Query: 258 ANLTVPRGVRKVFFGWRRGCDV 279
+ + V F + G V
Sbjct: 229 SEIAT---VHAASFSKQDGTTV 247
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,787,637,987
Number of Sequences: 23463169
Number of extensions: 203665042
Number of successful extensions: 531367
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4950
Number of HSP's successfully gapped in prelim test: 6277
Number of HSP's that attempted gapping in prelim test: 513660
Number of HSP's gapped (non-prelim): 12205
length of query: 303
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 162
effective length of database: 9,050,888,538
effective search space: 1466243943156
effective search space used: 1466243943156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)