BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022062
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P96613|MURF_BACSU UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Bacillus subtilis (strain 168) GN=murF PE=3 SV=1
Length = 457
Score = 127 bits (320), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
>sp|P45450|MURF_SYNY3 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=murF
PE=3 SV=1
Length = 454
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 12/211 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--V 106
ICTDTR L F A+ G+ FD H FI P+ G + V+ ++ + Q V
Sbjct: 33 ICTDTRSLV--SGDLFLALRGESFDGHSFI-PQALTAGAIAVVTDRPVEGLGETVAQFLV 89
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL + ++A R RF+ ++GVTGSVGK+TTK +IA L G NV ++
Sbjct: 90 E-----DTLVAYQHIAAGWRQ-RFTIPIIGVTGSVGKTTTKELIAAVLSQFG-NVHKTRA 142
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ + D A++EM M G+G+I LA +A+P I ++ NVG +H+ LG
Sbjct: 143 NYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLG 202
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
S +A AK E+ +LN D+ L+
Sbjct: 203 SELAIAEAKCELLAHQPPESTAILNRDNALL 233
>sp|O33804|MURF_STRTO Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Streptomyces toyocaensis GN=murF PE=3 SV=2
Length = 446
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 137/260 (52%), Gaps = 21/260 (8%)
Query: 29 INEIAESVNGKI----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIAE V GK + P ++ D+R P F A G+H D H++ E G
Sbjct: 6 LGEIAEIVGGKATGESVTVTAPAVL--DSRQAEPGG--LFVAFAGEHADGHDYA--ERAG 59
Query: 85 K-GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVG 142
+ G V V+G++ + V VE +V T +L +A + G+ +VGVTGS G
Sbjct: 60 RAGAVAVLGSRPTSLP---TVVVE---DVRT--ALQTLAAHVVARLRDGLTVVGVTGSQG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+ TK ++A L G V + G+ NN +GV L+++ A VLEMG +G+I E
Sbjct: 112 KTGTKDLLAAVLSGAGPTV-ATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAE 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + P+I VVLNVG +HL GS +ARAKGE+ Q G VLNADDP VA+++V
Sbjct: 171 LTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASMSV 230
Query: 263 PRGVRKVFFGWRRGCDVRLV 282
+ FG DV+++
Sbjct: 231 LTDGPVLTFGRTDPADVQVL 250
>sp|Q9AKP1|MURF_RICMO Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Rickettsia montana GN=murF PE=3 SV=1
Length = 449
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 8/194 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I QV N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
MA Y R + + +V +TGSVGK++TK + + L+ VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSKAKFIV-ITGSVGKTSTKEALKVLLQH-DFLVFASRGNFNNKLGMLINLA 145
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EIF
Sbjct: 146 SMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIF 205
Query: 240 QESKLGDVCVLNAD 253
D+ V+NAD
Sbjct: 206 ANFSKNDIAVINAD 219
>sp|O05953|MURF_RICPR Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Rickettsia prowazekii (strain Madrid E) GN=murF PE=3
SV=2
Length = 449
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 24/247 (9%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H++I + KG VI ++ DK + + N + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYIQDAI-DKGATAVIVSKQVEINDKDKIILVNN----SFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN +G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQHDFI-VFASRGNFNNYLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ +GEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHQGEISELVQILKPNIAMINNISEAHLEFFHSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ ++NA + ++ NL++ FG +L+ + L
Sbjct: 205 FKNFSKNDIAIINASNNCYNKILSILKNLSITNIYS---FGHSSKASAKLILYKT----L 257
Query: 292 GVQVVLE 298
G QV L+
Sbjct: 258 GEQVHLQ 264
>sp|Q92H60|MURF_RICCN Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=murF PE=3 SV=1
Length = 449
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQH-DFLVFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNAD 253
F D+ V+NAD
Sbjct: 205 FANFSKNDIAVINAD 219
>sp|P11880|MURF_ECOLI UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Escherichia coli (strain K12) GN=murF PE=1 SV=2
Length = 452
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 14/226 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ FDAH+F G ++ + + + V+
Sbjct: 27 VTTDTRKLTPGC--LFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVK--- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T + +A + R + +V +TGS GK++ K M A L G N + GN
Sbjct: 82 ----DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNL 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++L+ + D AV+E+G + +GEI + RPE +V N+ +HLE GSL
Sbjct: 136 NNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
VA+AKGEIF + ++NAD+ N G RKV WR
Sbjct: 196 AGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKV---WR 238
>sp|Q89AQ1|MURF_BUCBP UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=murF PE=3 SV=1
Length = 460
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 15/209 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC---NNWDKGFVQ 105
I TDTR + P F A+ G++FDAH F++ E KG ++ + C N + VQ
Sbjct: 33 ITTDTRKITPK--CLFIALIGKNFDAHMFVN-EAISKGAAALLLEKQCYPKNVIPQIIVQ 89
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
NT +L +A + R+ + + ++ +TGS GK++ K M + L++ G N ++
Sbjct: 90 -------NTTIALGKIASWIRD-QTNATVIAITGSSGKTSVKEMTSSILKNCG-NTISTF 140
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN +GV L+L+ ++++ A+LE+G + +I ++ +P I ++ N+ SHL
Sbjct: 141 QNLNNNIGVPLTLLNLNKSHKYAILELGANYPKDIEYTTKITKPNIALINNIYHSHLAGF 200
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADD 254
SL VA+AK EIF + + + N D
Sbjct: 201 KSLFGVAQAKQEIFLGLRKNGIAIYNKDS 229
>sp|P0A5L4|MURF_MYCTU UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Mycobacterium tuberculosis GN=murF PE=3 SV=1
Length = 510
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 28/265 (10%)
Query: 28 TINEIAESVNGKILKWGP--------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ +IAE V G + P G + D+R + P F A+ G D H+ +
Sbjct: 5 TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGG--LFLALPGARADGHDHAA 62
Query: 80 PELYGKGC-------VGV----IGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNS 128
+ VGV + N G ++ + +G+ + + + A +
Sbjct: 63 SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLATAVAA 122
Query: 129 RFSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185
+ ++G+TGS GK++TK ++A L LG V G++NN +G +++ R
Sbjct: 123 QLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLG-EVVAPPGSFNNELGHPWTVLRATRRT 181
Query: 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245
D +LEM G I LA +A P I VVLNVG +HL GS E +A+ K E+ Q
Sbjct: 182 DYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHS 241
Query: 246 DVCVLNADDPLV---ANLTVPRGVR 267
VLNADDP V A LT R VR
Sbjct: 242 GAVVLNADDPAVAAMAKLTAARVVR 266
>sp|P0A5L5|MURF_MYCBO UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=murF PE=3 SV=1
Length = 510
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 28/265 (10%)
Query: 28 TINEIAESVNGKILKWGP--------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ +IAE V G + P G + D+R + P F A+ G D H+ +
Sbjct: 5 TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGG--LFLALPGARADGHDHAA 62
Query: 80 PELYGKGC-------VGV----IGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNS 128
+ VGV + N G ++ + +G+ + + + A +
Sbjct: 63 SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLATAVAA 122
Query: 129 RFSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185
+ ++G+TGS GK++TK ++A L LG V G++NN +G +++ R
Sbjct: 123 QLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLG-EVVAPPGSFNNELGHPWTVLRATRRT 181
Query: 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245
D +LEM G I LA +A P I VVLNVG +HL GS E +A+ K E+ Q
Sbjct: 182 DYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHS 241
Query: 246 DVCVLNADDPLV---ANLTVPRGVR 267
VLNADDP V A LT R VR
Sbjct: 242 GAVVLNADDPAVAAMAKLTAARVVR 266
>sp|P45061|MURF_HAEIN UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=murF PE=3 SV=1
Length = 457
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 12/208 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR N FFA+ G+ FDAH+++ + +G + ++ Q ++ + V+
Sbjct: 28 INTDTR--KSVSNSLFFALKGEKFDAHQYLD-QAVSQGALALVVQQENSSISVPQLVVK- 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---VFQSY 165
+T +L +A + R + + V +TGS GK+T K M A L+ + V +
Sbjct: 84 ----DTRIALGELAKWLR-EKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTN 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +GV L+L+ + AV+E+G + + EI ++ +P ++ N+ +HLE
Sbjct: 139 GNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGF 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNAD 253
GSL V +AKGEI++ V ++NA+
Sbjct: 199 GSLAGVVQAKGEIYRGLTKNGVAIINAE 226
>sp|P57315|MURF_BUCAI UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=murF PE=3 SV=1
Length = 455
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 11/205 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DT+ + P F A+ G+ FDAH FI L K V + + ++ VE
Sbjct: 27 IVIDTKKIIPG--CLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHVP--YIIVE- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT +L +A + R + +L +TGS GK++ K M A L G N + N
Sbjct: 82 ----NTSIALGQIAGWVRKKTKAKIL-AITGSCGKTSVKEMTASILRKNG-NTISTIDNL 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++L+ + + V+E+G S GEI + +++P+I ++ N+ +HL+ SL
Sbjct: 136 NNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD 253
V++AK EIF K ++N D
Sbjct: 196 LGVSKAKSEIFSGLKPNSTVIINLD 220
>sp|O83401|MURF_TREPA UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Treponema pallidum (strain Nichols) GN=murF PE=3 SV=1
Length = 459
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 24/263 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV----------CNN 98
+ D+R + P F + G H D H F+ E KG V + +Q C
Sbjct: 29 VSFDSRAVVPR--DLFIPLRGAHVDGHTFVE-EALQKGAVATLIDQRYPHAGEYVAWCTR 85
Query: 99 WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158
+ + V +TL +L ++A + + + +G+TGS GK+T K M A A+ S
Sbjct: 86 FGAACIAVH-----DTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEM-ARAVFSER 139
Query: 159 VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVG 218
V + GN N+ +G+ SL + ++ + E+GM+ +GE+ LA++ P ++ NVG
Sbjct: 140 YRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEMRTLAQILVPHYAIITNVG 199
Query: 219 DSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+H+ LG+ + +A K EIF + V + D V +P G V+ RG
Sbjct: 200 CAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVPDDAYRVFLSNIPYGRVVVYDQGGRG-- 257
Query: 279 VRLVAAQVANGGLGVQVVLEKER 301
+A +V + GL VL + R
Sbjct: 258 ---LATEVIDEGLRGSRVLYQGR 277
>sp|O69556|MURF_MYCLE UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Mycobacterium leprae (strain TN) GN=murF PE=3 SV=1
Length = 517
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK++TK ++A+ LE LG V ++NN +G +++ R+ D +LEM
Sbjct: 133 IIGITGSSGKTSTKDLVAVVLELLG-EVVAPPESFNNELGHPWTVLRATRSTDYLILEMS 191
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
G I LA +A P+I VVLNVG +HL GS E +AR K E+ Q V +LN D
Sbjct: 192 ARRPGNIAALAAIAPPKIGVVLNVGTAHLGEFGSREAIARTKTELPQAIMQSGVVILNVD 251
Query: 254 DPLVANL---TVPRGVR 267
DP VA + TV R +R
Sbjct: 252 DPAVAAMADATVARVIR 268
>sp|Q44777|MURF_BORBU UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=murF PE=3 SV=2
Length = 464
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGS GK+TTK M+ L S ++++GN N+ +G+ LS++ ++ + AV E+G+
Sbjct: 121 IAITGSNGKTTTKEMLYSIL-SKKYKTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGV 179
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG-------EIFQESKLGDV 247
S GE+ L+++ +PEI ++ N+ +H+++ L+ +A K EIF +++ D
Sbjct: 180 SYVGEMDLLSQILKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIEIFVVNEMNDY 239
Query: 248 CVLNADDPLVANLTVPRGVRKVFFGWR 274
CV +AN P V+ V+F +
Sbjct: 240 CVYLEKRAKIAN---P-NVKIVYFDFE 262
>sp|Q5L0X7|MURD_GEOKA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Geobacillus
kaustophilus (strain HTA426) GN=murD PE=3 SV=1
Length = 451
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVL 190
G +G+TGS GK+TT ++I L++ G + + GN IG+ V V
Sbjct: 111 EGSFIGITGSNGKTTTTTLIYEMLKADGQDPLLA-GN-----------IGL---VACEVA 155
Query: 191 EMGMSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
G+ + EL+ RP I V+LN+ D+HL+ G+ E A AK IF+
Sbjct: 156 REAKPGQWLVTELSSFQLAGIDKFRPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQT 215
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFF 271
D V+NADDPLV N+ +KV F
Sbjct: 216 ERDYAVVNADDPLVMNIASSVRSQKVLF 243
>sp|B4SHE6|MURD_PELPB UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=murD
PE=3 SV=1
Length = 464
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 128 SRF-SGVLVGVTGSVGKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGID-RA 184
SRF +VG+TG+ GK+TT +++ E G+ N +++Y N +GV S + +D +A
Sbjct: 100 SRFCKARIVGITGTDGKTTTSTLVHALCEEDGLRNGYRAYSVGN--IGVPFSSMVLDMKA 157
Query: 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESK 243
DIAV+E+ LE + +PE+ V++N+ HL+ G L+ A AK I+
Sbjct: 158 GDIAVVELSSYQ----LERSPTLKPEVAVIMNITPDHLDRYAGELQGYAAAKFRIYANQG 213
Query: 244 LGDVCVLNADDPLV 257
GD + N DD L+
Sbjct: 214 AGDTLIYNEDDALL 227
>sp|B3EQC0|MURD_CHLPB UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
phaeobacteroides (strain BS1) GN=murD PE=3 SV=1
Length = 466
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 134 LVGVTGSVGKSTTKSMI-ALALESLGVNVFQSYGNWNNRVGVAL-SLIGIDRAVDIAVLE 191
++G+TG+ GK+TT SM+ A+ L G N + +GV SL+G R DIAV+E
Sbjct: 110 IIGITGTDGKTTTSSMVEAICLS--GANSREQRVFSAGNIGVPFSSLVGEMRKGDIAVVE 167
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVL 250
+ LE R RP++ V+ N+ HL+ GS++ A AK I+ + + D V
Sbjct: 168 LSSYQ----LERCRSFRPDVAVITNIMPDHLDRYGGSMKRYAEAKYRIYAQQRKQDTLVY 223
Query: 251 NADD 254
NADD
Sbjct: 224 NADD 227
>sp|B3EIL0|MURD_CHLL2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=murD PE=3
SV=1
Length = 465
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGIDRA-VDIAVLE 191
+ G+TG+ GK+TT +++ E+ G+ N ++++ N +GV S + +D A D+AV+E
Sbjct: 107 IAGITGTDGKTTTSTLLHRIAEADGMKNDYRAFSVGN--IGVPFSSLVLDMAPADLAVVE 164
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVL 250
+ LE RP++ V+ N+ HL+ G ++ A AK I+ + D V
Sbjct: 165 L----SSYQLEGCETFRPDVSVITNITPDHLDRYNGDMQLYAAAKFRIYASQRASDTLVY 220
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
N DDPL +R F G RG R+V + N
Sbjct: 221 NFDDPL---------LRAQFSGNGRGFPFRIVPFGIGN 249
>sp|A8FCX9|MURD_BACP2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus pumilus
(strain SAFR-032) GN=murD PE=3 SV=1
Length = 451
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
+ +A + +S F +G+TGS GK+TT ++I L+ + GN +G S
Sbjct: 104 IELAYHLTSSPF----IGITGSNGKTTTTTLIYEMLKKDSQKTLVA-GN----IGTVASE 154
Query: 179 IGI----DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234
+ D + + + G E RP+I ++LN+ D+HL+ + E+ +A
Sbjct: 155 VAANADGDEWIVTELSSFQLMGTVEF-------RPKISLILNIFDAHLDYHHTREEYEKA 207
Query: 235 KGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
K ++F D+ V+N DDP V L +KVFF + +
Sbjct: 208 KQKVFVHQHEDDIAVINLDDPSVVKLAEGSKAKKVFFSVKEPVE 251
>sp|B4U609|MURD_HYDS0 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Hydrogenobaculum
sp. (strain Y04AAS1) GN=murD PE=3 SV=1
Length = 411
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++ VTG+ GKSTT +I F+ GN+ G S I +D + LE
Sbjct: 87 IIAVTGTDGKSTTVHLIH------HFTSFKEGGNF----GTPFSEIVLDNDKENVALEAS 136
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
S +G+ L+ RP + V LN HL+ SLED +K +IF+ D+ +LNA
Sbjct: 137 -SFQGKTLD---TFRPNVGVFLNFSKDHLDWHPSLEDYLLSKQKIFKNQTQEDILILNAQ 192
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
P+ P +K+FFG D+++V + V
Sbjct: 193 KPVC---DTPSLAKKIFFG--ENGDLKVVGSDV 220
>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3
SV=1
Length = 456
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL-SLIGIDRAVDIAVLEM 192
+V +TG+ GK+T S++ L + G VF GN +GV L L+ VD+ VLE+
Sbjct: 116 VVAITGTNGKTTVTSLVGDLLRASGKRVFVG-GN----IGVPLLDLLSSGDEVDVIVLEV 170
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
LELA P I ++LN+ HL+ G L AK +FQ+ + D+ +++
Sbjct: 171 ----SSFQLELAGDFSPHIALLLNLSPDHLDRHGDLAGYRAAKMHLFQKQGMTDIAIVSG 226
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
DDPL + FG+ D+ + A
Sbjct: 227 DDPLCLLSDGCGEASRYLFGFSAASDISVAAGH 259
>sp|O67852|MURD_AQUAE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Aquifex aeolicus
(strain VF5) GN=murD PE=3 SV=1
Length = 415
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
F G ++ +TG+ GKSTT + L L+ VF++ GN +G S + ++ IAV
Sbjct: 82 FKGKVIAITGTDGKSTTTRLTYLILKKFFDEVFEA-GN----IGKPFSEVVLENPEGIAV 136
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
LE+ S +G+ L + RP I ++ HL+ S+ED ++K IF+ D +
Sbjct: 137 LEVS-SFQGKTL---KTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRIFENQTEEDFLI 192
Query: 250 LNADDPLVANLTVPRGVRKVFFG 272
LN D + P RKV F
Sbjct: 193 LN--DLVYEIKKTPSRARKVLFS 213
>sp|Q67QM7|MURD_SYMTH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=murD PE=3 SV=1
Length = 455
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++GVTGS GK+TT ++I L + G + GN + + I + V VLE+
Sbjct: 112 VIGVTGSAGKTTTTTLIGEILRAAGRETYVG-GNIGKPLIEQVEAIPSEAVV---VLELS 167
Query: 194 MSGKGEILELARMAR-PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+L + R P I VV NV +HL+ ++E+ AK IF+ D VLNA
Sbjct: 168 S------FQLQLVHRSPHIAVVTNVSPNHLDVHATMEEYVEAKKAIFRRQSPADWLVLNA 221
Query: 253 DDPLVANLTVPRGVRKVFFGWR 274
DDP V R V F R
Sbjct: 222 DDPTVRAFAAEARSRVVLFSRR 243
>sp|Q604V5|MURD_METCA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=murD PE=3 SV=1
Length = 459
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 38/237 (16%)
Query: 42 KWGPPGIICTDTRILAPNKNQWF--FAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW 99
+ PPG+ D R P+ + F+ + H +SP L +
Sbjct: 54 RLAPPGL--QDLREAFPDVPLFLGDFSRSALAAATHLVVSPGL---------------SL 96
Query: 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
D ++ V L AC R +V +TG+ GKST +++ L ++ GV
Sbjct: 97 DLAEIRESHRCGVRVFGDLDLFACCVRAP-----VVAITGANGKSTVTTLVGLMAKAAGV 151
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
N GN + L +D A ++ VLE+ LE + + ++ VLN+
Sbjct: 152 NAAVG-GNLGTPM-----LDLLDAAAELYVLEL----SSFQLERSELFEADVATVLNISP 201
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG 276
H++ L A AK +F+ L VLN DDPLVA + P G R V FG G
Sbjct: 202 DHMDRYPDLASYAEAKRRVFRGEGL---MVLNQDDPLVAAMYRP-GRRAVRFGLGSG 254
>sp|A5D147|MURD_PELTS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=murD PE=3 SV=1
Length = 455
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE A RP++ VVLN+ HL+ G++ + A K +F GD VLN DDPL A+L
Sbjct: 171 LETASTFRPKVGVVLNITPDHLDRHGTMGNYAATKARMFANQGPGDFAVLNCDDPLAASL 230
Query: 261 TVPRGVRKVFFGWRR 275
R +FF R+
Sbjct: 231 KAGVRSRVIFFSRRK 245
>sp|Q01Q46|MURD_SOLUE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Solibacter
usitatus (strain Ellin6076) GN=murD PE=3 SV=1
Length = 442
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIA 188
G +G+TGS GK+TT S+ L GV V Q GN +G+ ++ ++ R
Sbjct: 100 LKGRTIGITGSNGKTTTTSLTGHILREAGVPV-QVGGN----IGLPVTAMVESSRDDGWN 154
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
VLE+ LE R I + LNV +HL+ + E+ A KG +F+ + GD
Sbjct: 155 VLELSSFQ----LETIHEFRAHIGLALNVTQNHLDRHHTFENYAAIKGRLFETQQAGDYA 210
Query: 249 VLNADDPL 256
VLNA+DP+
Sbjct: 211 VLNAEDPV 218
>sp|B4U1U3|MURD_STREM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
equi subsp. zooepidemicus (strain MGCS10565) GN=murD
PE=3 SV=1
Length = 452
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MIA L + + + GN +G S + A DI V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGNQSALLA-GN----IGFPASEVAQAATAKDILVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
++L + +P I V+ N+ +HL+ GS ED AK I D VLNA
Sbjct: 169 S---SFQLLGTEQF-QPHIAVITNLVPTHLDYHGSFEDYIAAKWRIQHRMTDKDYLVLNA 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
D LV +L VFF + D A +A+G L
Sbjct: 225 DQELVKSLAQKTKASPVFFSTKEKVD----GAYLADGYL 259
>sp|Q3ANV5|MURD_CHLCH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
chlorochromatii (strain CaD3) GN=murD PE=3 SV=1
Length = 464
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+VG+TG+ GK+TT ++I E+ G + ++SY N+ + + S++ + D+AV+E+
Sbjct: 107 MVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFS-SMVLAMQPNDVAVIEL 165
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEIFQESKLGDVCVLN 251
LE + P++ ++ N+ HL+ G +++ A AK IF + GD + N
Sbjct: 166 ----SSYQLERSISFHPQVSLITNITPDHLDRYGQNMQRYAEAKYRIFMNQQAGDTFIYN 221
Query: 252 ADDPLV------ANLTVPRGVRKVFFGWRRGCDVRL 281
DD ++ + + VP R V FG +V+L
Sbjct: 222 QDDSMLQAAFGASQIAVP--CRSVAFGLEPLTNVQL 255
>sp|C5D8M2|MURD_GEOSW UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Geobacillus sp.
(strain WCH70) GN=murD PE=3 SV=1
Length = 451
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLEM 192
+G+TGS GK+TT ++I L G GN +G A + A + V E+
Sbjct: 114 FIGITGSNGKTTTTTLIYEMLRE-GEKRPLLAGN----IGTAACEVAKKAEASNWLVTEL 168
Query: 193 GMSGKGEILELA--RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
+LA R RP I V+LN+ D+HL+ G+ E A+AK IF+ D V+
Sbjct: 169 SS------FQLAGIRDFRPRISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVI 222
Query: 251 NADDPLVANLTVPRGVRKVFF 271
NADD LV L +KV F
Sbjct: 223 NADDELVMQLAENIHAQKVAF 243
>sp|Q9K9S8|MURD_BACHD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=murD PE=3 SV=1
Length = 450
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 22/134 (16%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLE- 191
+V +TGS GK+TT S++ L+ + GN +GV S + + A D+ V+E
Sbjct: 113 IVAITGSNGKTTTTSLVVEMLKG-SAREPKVAGN----IGVVASDVAREATADDVIVMEV 167
Query: 192 -----MGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
MG S RP++ ++LN+ D+HL+ GS E+ AK +I + K D
Sbjct: 168 SSFQLMGTS----------HFRPKVAILLNIFDAHLDYHGSKENYVAAKKKIVENMKEED 217
Query: 247 VCVLNADDPLVANL 260
V NADDPLV+ +
Sbjct: 218 YFVYNADDPLVSKV 231
>sp|A6TS66|MURE_ALKMQ UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=murE PE=3 SV=1
Length = 494
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK-GFVQVE 107
I D+R + PN F I G D H FI + KG + ++ + D +VQV+
Sbjct: 26 IYYDSRKVTPN--SLFICIEGFQTDGHHFIDQAI-KKGAIAIVAQKDMTGLDGVTWVQVK 82
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE--SLGVNVFQSY 165
+ + + + Y R S+ L+GVTG+ GK++T MI LE V + +
Sbjct: 83 ---DTRQVMAQLGSTFYGRPSQHLE-LIGVTGTNGKTSTTYMIKKILENHERKVGLIGTI 138
Query: 166 GNW--NNRV--------GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR--V 213
NW N V + L I + A D V E M L L R+A E + V
Sbjct: 139 ANWIGNTEVEAQRTTPESIDLQQIFKEMA-DEKVTECVMEVSSHALALERVAESEFKVGV 197
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
N+ HL+ ++++ AK ++F + + + V+N DDP
Sbjct: 198 FTNLTPEHLDFHENIDNYREAKKKLFYLTTVAN--VINIDDP 237
>sp|B3QLW6|MURD_CHLP8 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobaculum
parvum (strain NCIB 8327) GN=murD PE=3 SV=1
Length = 467
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 118 LVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES----LGVNVFQSYGNWNNRVG 173
L + C AR ++G+TG+ GK+TT ++I E+ G F S GN
Sbjct: 101 LASWFCRAR-------IIGITGTDGKTTTATLIHRICEADGEQQGYRAF-SVGNIGTPFS 152
Query: 174 VALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVA 232
+S + D DIAVLE+ LE RP I V+ N+ H++ G + A
Sbjct: 153 SEVSGMEPD---DIAVLEL----SSYQLEGCSSFRPNIAVLTNITPDHMDRYGGDIHAYA 205
Query: 233 RAKGEIFQESKLGDVCVLNADDPLV 257
RAK I + GD + N DDPL+
Sbjct: 206 RAKFRIHASQQAGDTLIYNHDDPLL 230
>sp|A1AU63|MURD_PELPD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelobacter
propionicus (strain DSM 2379) GN=murD PE=3 SV=1
Length = 446
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 128 SRF-SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
SRF LV +TG+ GK+T ++ G F GN N + + L+ V+
Sbjct: 103 SRFIQAPLVAITGTNGKTTATTITGDIFIKNGFRTFVG-GNIGNPL---IELLESAEPVE 158
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
V E+ LE R RP + +LN+ + HL+ S + AK IF+ D
Sbjct: 159 RVVAEISSFQ----LEWIRAFRPAVAALLNLSEDHLDRYASYREYIEAKLRIFENQTADD 214
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRR 275
V+NADD LV + RG+R F + R
Sbjct: 215 YAVVNADDELV--MEHSRGLRACLFPFSR 241
>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter
versatilis (strain Ellin345) GN=murD PE=3 SV=1
Length = 453
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLE 191
G ++ +TGS GK+TT S+ L+S G GN A+S + +VLE
Sbjct: 108 GHVIAITGSNGKTTTTSLCGDILQSGGKKTLVG-GNIGTP---AISFAQLANDDTWSVLE 163
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLN 251
+ LE RPEI +LN+ HL+ G+ E A AK IF+ + D +LN
Sbjct: 164 ISSFQ----LETIERFRPEIAAILNITPDHLDRHGTFEKYAAAKERIFENQREHDFAILN 219
Query: 252 ADD 254
AD+
Sbjct: 220 ADN 222
>sp|Q8KGD2|MURD_CHLTE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=murD
PE=3 SV=1
Length = 465
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 134 LVGVTGSVGKSTTKSMI----ALALESLGVNVFQSYGNWNNRVGVALS--LIGIDRAVDI 187
++G+TG+ GK+TT +++ A E G F S GN +G+ S + G+ A DI
Sbjct: 110 IIGITGTDGKTTTATLLHRICAAEGERKGFRAF-SVGN----IGIPFSSEVPGMT-AADI 163
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEIFQESKLGD 246
AVLE+ LE RP I V+ NV H++ G S+E A AK I GD
Sbjct: 164 AVLEL----SSYQLEACFDFRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGD 219
Query: 247 VCVLNADDPLV 257
+ N DDP++
Sbjct: 220 TLIYNHDDPIL 230
>sp|Q65JY2|MURD_BACLD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=murD PE=3
SV=1
Length = 451
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
V +A + ++ F +G+TGS GK+TT +++ L++ + GN +G A S
Sbjct: 104 VELAYHLTDAPF----IGITGSNGKTTTTTLVYEMLKADSKKALVA-GN----IGTAASE 154
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + D ++ S + L RP+I ++LNV D+HL+ S ++ AK ++
Sbjct: 155 VANQASGDEWIVTELSSFQ---LMGTYQFRPKIGLLLNVFDAHLDYHHSRKNYELAKQQV 211
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
++ DV V+N DD V L KV+F RR +
Sbjct: 212 YRNQSETDVAVVNLDDETVVRLAECSKAEKVYFSVRRTLE 251
>sp|A2RDK9|MURD_STRPG UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M5 (strain Manfredo) GN=murD PE=3 SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|Q8P063|MURD_STRP8 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=murD PE=3
SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|Q5XB04|MURD_STRP6 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=murD PE=3 SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|B9M170|MURD_GEOSF UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Geobacter sp.
(strain FRC-32) GN=murD PE=3 SV=1
Length = 453
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
RP++ V+LN+ + HL+ S +D AK IF+ + D VLN DDPLVA R
Sbjct: 176 RPKVAVLLNITEDHLDRYASYQDYIDAKLRIFENQTVDDFAVLNVDDPLVAACAATVKSR 235
Query: 268 KVFFGWRR 275
F R+
Sbjct: 236 VFPFSQRK 243
>sp|B5XMA3|MURD_STRPZ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M49 (strain NZ131) GN=murD PE=3 SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|Q48SK8|MURD_STRPM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M28 (strain MGAS6180) GN=murD PE=3
SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|Q1JKY4|MURD_STRPC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M12 (strain MGAS9429) GN=murD PE=3
SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|Q1JAT4|MURD_STRPB UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M12 (strain MGAS2096) GN=murD PE=3
SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|Q1J5S5|MURD_STRPF UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M4 (strain MGAS10750) GN=murD PE=3
SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|P0C0D8|MURD_STRP1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M1 GN=murD PE=3 SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTKATVIPFSTQKVVD 250
>sp|P0C0D7|MURD_STRPY UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes GN=murD PE=1 SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTQATVIPFSTQKVVD 250
>sp|P0DC53|MURD_STRPQ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=murD PE=3 SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTQATVIPFSTQKVVD 250
>sp|Q1JG10|MURD_STRPD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pyogenes serotype M2 (strain MGAS10270) GN=murD PE=3
SV=1
Length = 452
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MIA L + G + S GN +G S V++
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGGQSALLS-GN----IGYPAS----------KVVQKA 158
Query: 194 MSGKGEILELARMA-------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
++G ++EL+ RP I V+ N+ +HL+ GS ED AK I + D
Sbjct: 159 IAGDTLVMELSSFQLVGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESD 218
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+LNA+ + A L + F ++ D
Sbjct: 219 YLILNANQEISATLAKTTQATVIPFSTQKVVD 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,247,936
Number of Sequences: 539616
Number of extensions: 4821871
Number of successful extensions: 14395
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 660
Number of HSP's that attempted gapping in prelim test: 13495
Number of HSP's gapped (non-prelim): 960
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)