Query 022062
Match_columns 303
No_of_seqs 278 out of 1697
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14093 UDP-N-acetylmuramoyla 100.0 2.3E-53 4.9E-58 418.4 29.8 264 25-300 5-277 (479)
2 COG0770 MurF UDP-N-acetylmuram 100.0 3.4E-53 7.3E-58 410.6 28.3 264 26-301 2-270 (451)
3 PRK10773 murF UDP-N-acetylmura 100.0 8.4E-53 1.8E-57 411.8 29.6 261 27-300 4-268 (453)
4 TIGR01143 murF UDP-N-acetylmur 100.0 2.8E-51 6E-56 397.2 27.5 236 51-300 1-240 (417)
5 PRK11930 putative bifunctional 100.0 8.3E-49 1.8E-53 408.1 29.8 259 27-300 3-272 (822)
6 PRK00139 murE UDP-N-acetylmura 100.0 1E-47 2.2E-52 376.6 26.7 245 27-298 4-267 (460)
7 TIGR01085 murE UDP-N-acetylmur 100.0 1.6E-47 3.4E-52 375.6 24.6 243 45-300 3-272 (464)
8 PRK11929 putative bifunctional 100.0 1.6E-46 3.5E-51 396.8 28.6 243 46-299 526-776 (958)
9 PRK11929 putative bifunctional 100.0 1.3E-45 2.8E-50 389.9 27.2 243 45-300 28-293 (958)
10 PRK14022 UDP-N-acetylmuramoyla 100.0 4E-44 8.6E-49 353.0 22.9 221 45-282 33-273 (481)
11 COG0769 MurE UDP-N-acetylmuram 100.0 3.8E-37 8.3E-42 301.2 19.9 243 47-301 11-276 (475)
12 PF08245 Mur_ligase_M: Mur lig 100.0 9.6E-31 2.1E-35 226.7 12.6 158 137-298 1-159 (188)
13 COG0773 MurC UDP-N-acetylmuram 100.0 9.2E-28 2E-32 230.0 21.6 246 17-302 10-267 (459)
14 PRK00421 murC UDP-N-acetylmura 100.0 3.9E-27 8.5E-32 231.1 21.0 187 86-299 66-263 (461)
15 PRK00141 murD UDP-N-acetylmura 99.9 1.3E-26 2.8E-31 228.2 19.9 167 86-275 74-253 (473)
16 COG0771 MurD UDP-N-acetylmuram 99.9 1.3E-26 2.8E-31 223.7 18.3 135 131-276 109-245 (448)
17 TIGR01081 mpl UDP-N-acetylmura 99.9 3.4E-26 7.3E-31 223.8 20.8 143 133-285 103-252 (448)
18 PRK01710 murD UDP-N-acetylmura 99.9 9.6E-27 2.1E-31 228.3 16.9 133 132-275 117-251 (458)
19 PRK03806 murD UDP-N-acetylmura 99.9 2.6E-26 5.7E-31 223.8 19.5 181 52-281 59-240 (438)
20 TIGR01087 murD UDP-N-acetylmur 99.9 3.1E-26 6.7E-31 222.9 19.8 164 86-275 62-236 (433)
21 PRK01368 murD UDP-N-acetylmura 99.9 1.9E-26 4.1E-31 225.8 17.9 133 132-275 104-240 (454)
22 PRK02006 murD UDP-N-acetylmura 99.9 1.5E-26 3.3E-31 229.0 17.3 220 27-274 20-257 (498)
23 TIGR01082 murC UDP-N-acetylmur 99.9 1.2E-25 2.6E-30 219.9 21.5 155 132-298 99-256 (448)
24 PRK04308 murD UDP-N-acetylmura 99.9 1.2E-25 2.7E-30 219.5 19.5 171 85-281 66-249 (445)
25 PRK04663 murD UDP-N-acetylmura 99.9 7.9E-26 1.7E-30 220.6 17.2 129 132-275 108-236 (438)
26 PRK01390 murD UDP-N-acetylmura 99.9 6.6E-26 1.4E-30 222.3 15.1 175 86-275 65-250 (460)
27 PRK00683 murD UDP-N-acetylmura 99.9 1E-25 2.2E-30 218.7 13.5 144 61-242 60-203 (418)
28 PRK04690 murD UDP-N-acetylmura 99.9 9.6E-25 2.1E-29 214.7 18.6 170 86-274 69-249 (468)
29 PRK02472 murD UDP-N-acetylmura 99.9 9.1E-25 2E-29 213.2 18.2 135 132-275 108-243 (447)
30 PRK03369 murD UDP-N-acetylmura 99.9 7.7E-25 1.7E-29 216.4 17.3 152 86-261 70-232 (488)
31 PRK01438 murD UDP-N-acetylmura 99.9 7.3E-25 1.6E-29 215.9 16.6 135 129-274 119-258 (480)
32 PRK14106 murD UDP-N-acetylmura 99.9 1.9E-24 4.2E-29 211.1 17.9 135 132-275 108-243 (450)
33 PRK02705 murD UDP-N-acetylmura 99.9 1.5E-24 3.3E-29 212.4 16.6 131 131-274 108-243 (459)
34 PRK14573 bifunctional D-alanyl 99.9 4.3E-24 9.4E-29 222.6 20.9 149 133-299 105-255 (809)
35 PRK03803 murD UDP-N-acetylmura 99.9 2E-24 4.3E-29 211.2 17.2 129 132-274 108-236 (448)
36 PRK03815 murD UDP-N-acetylmura 99.9 1.1E-24 2.3E-29 210.2 13.8 123 133-273 90-212 (401)
37 TIGR01499 folC folylpolyglutam 99.9 3E-24 6.5E-29 207.0 12.9 150 118-273 4-198 (397)
38 PRK14016 cyanophycin synthetas 99.9 4.8E-24 1E-28 219.2 14.9 147 128-276 476-635 (727)
39 TIGR02068 cya_phycin_syn cyano 99.9 6.5E-24 1.4E-28 221.9 14.2 161 113-275 458-633 (864)
40 PRK10846 bifunctional folylpol 99.9 4E-22 8.6E-27 193.4 14.6 134 115-254 32-204 (416)
41 PLN02913 dihydrofolate synthet 99.8 4.4E-20 9.5E-25 183.2 13.1 154 116-272 59-264 (510)
42 PLN02881 tetrahydrofolylpolygl 99.8 1.9E-18 4.1E-23 170.5 14.3 127 130-261 59-230 (530)
43 COG0285 FolC Folylpolyglutamat 99.7 1.3E-16 2.7E-21 154.0 15.1 153 115-273 27-226 (427)
44 PF01225 Mur_ligase: Mur ligas 99.4 2.9E-15 6.3E-20 113.2 -3.8 72 46-125 2-83 (83)
45 KOG2525 Folylpolyglutamate syn 99.3 9.9E-12 2.2E-16 119.6 9.8 142 115-261 53-241 (496)
46 COG1703 ArgK Putative periplas 93.3 1.3 2.9E-05 41.3 11.4 120 124-258 44-204 (323)
47 PF04613 LpxD: UDP-3-O-[3-hydr 93.0 0.22 4.8E-06 36.2 4.8 64 46-124 5-71 (72)
48 TIGR03815 CpaE_hom_Actino heli 91.4 0.94 2E-05 42.4 8.2 72 73-162 52-126 (322)
49 COG1044 LpxD UDP-3-O-[3-hydrox 91.3 0.66 1.4E-05 43.8 6.9 86 25-125 2-93 (338)
50 PRK06696 uridine kinase; Valid 91.2 0.54 1.2E-05 41.7 6.1 47 115-161 4-53 (223)
51 PRK15453 phosphoribulokinase; 91.2 0.24 5.2E-06 45.9 3.9 31 130-160 3-35 (290)
52 PRK00652 lpxK tetraacyldisacch 90.7 1.5 3.3E-05 41.5 8.9 37 130-166 47-88 (325)
53 PRK00892 lpxD UDP-3-O-[3-hydro 90.7 1.3 2.8E-05 42.1 8.4 87 26-127 2-94 (343)
54 PHA02519 plasmid partition pro 90.4 0.49 1.1E-05 45.9 5.4 50 113-162 86-139 (387)
55 TIGR03172 probable selenium-de 90.3 0.3 6.5E-06 44.0 3.6 30 134-163 1-30 (232)
56 PRK13705 plasmid-partitioning 89.9 0.49 1.1E-05 45.8 4.9 50 113-162 86-139 (388)
57 TIGR03029 EpsG chain length de 89.7 0.87 1.9E-05 41.5 6.3 50 114-163 83-137 (274)
58 TIGR03018 pepcterm_TyrKin exop 89.6 0.99 2.2E-05 39.4 6.3 34 129-162 32-69 (207)
59 TIGR01007 eps_fam capsular exo 89.6 0.7 1.5E-05 40.1 5.3 32 131-162 16-50 (204)
60 PRK13869 plasmid-partitioning 89.5 0.46 9.9E-06 46.3 4.5 37 126-162 115-154 (405)
61 TIGR01853 lipid_A_lpxD UDP-3-O 89.5 1.3 2.9E-05 41.8 7.4 80 31-125 1-84 (324)
62 COG0769 MurE UDP-N-acetylmuram 87.8 0.12 2.6E-06 51.4 -0.8 123 131-257 63-190 (475)
63 PF00485 PRK: Phosphoribulokin 87.8 0.39 8.5E-06 41.5 2.4 27 134-160 1-29 (194)
64 PRK05439 pantothenate kinase; 87.8 1.3 2.8E-05 41.7 6.1 38 120-157 73-113 (311)
65 COG1763 MobB Molybdopterin-gua 87.5 0.69 1.5E-05 39.3 3.7 30 132-161 2-33 (161)
66 COG2403 Predicted GTPase [Gene 87.4 0.6 1.3E-05 44.8 3.5 31 132-162 126-159 (449)
67 cd02042 ParA ParA and ParB of 87.1 6.8 0.00015 29.7 8.9 48 134-196 4-51 (104)
68 PF03205 MobB: Molybdopterin g 87.1 2.9 6.3E-05 34.4 7.1 30 133-162 1-32 (140)
69 PRK10416 signal recognition pa 86.3 3.6 7.9E-05 38.8 8.2 31 132-162 114-146 (318)
70 PRK07667 uridine kinase; Provi 86.2 1.6 3.4E-05 37.8 5.4 30 132-161 17-48 (193)
71 cd01983 Fer4_NifH The Fer4_Nif 86.0 0.9 1.9E-05 33.3 3.3 28 135-162 2-31 (99)
72 COG1936 Predicted nucleotide k 85.9 0.8 1.7E-05 39.4 3.2 25 134-162 2-28 (180)
73 PRK14489 putative bifunctional 85.5 1.6 3.5E-05 41.8 5.5 52 111-162 183-237 (366)
74 TIGR03453 partition_RepA plasm 85.0 1.2 2.6E-05 43.0 4.4 35 128-162 100-137 (387)
75 PF02606 LpxK: Tetraacyldisacc 84.5 13 0.00029 35.1 11.1 39 129-167 32-75 (326)
76 cd02040 NifH NifH gene encodes 84.4 1.1 2.4E-05 40.4 3.8 25 138-162 9-33 (270)
77 COG0132 BioD Dethiobiotin synt 84.3 1.2 2.7E-05 39.8 3.8 31 132-162 2-35 (223)
78 TIGR00554 panK_bact pantothena 84.2 1.7 3.6E-05 40.5 4.9 26 131-156 61-88 (290)
79 COG0237 CoaE Dephospho-CoA kin 84.2 0.91 2E-05 40.0 2.9 27 132-162 2-30 (201)
80 PRK13232 nifH nitrogenase redu 83.7 1.3 2.7E-05 40.5 3.8 30 133-162 2-33 (273)
81 PRK09435 membrane ATPase/prote 83.6 12 0.00026 35.6 10.4 32 130-161 54-87 (332)
82 cd02029 PRK_like Phosphoribulo 83.4 1 2.2E-05 41.5 3.0 28 134-161 1-30 (277)
83 PRK14494 putative molybdopteri 82.7 1.4 3.1E-05 39.5 3.7 30 132-161 1-32 (229)
84 PRK12723 flagellar biosynthesi 81.7 10 0.00022 36.8 9.3 22 134-156 179-200 (388)
85 PRK14974 cell division protein 81.2 18 0.00038 34.5 10.6 32 131-162 139-172 (336)
86 PF03308 ArgK: ArgK protein; 80.9 3.1 6.7E-05 38.1 5.1 122 120-255 18-179 (266)
87 TIGR03371 cellulose_yhjQ cellu 80.9 1.9 4.1E-05 38.2 3.8 31 132-162 1-34 (246)
88 KOG0780 Signal recognition par 80.4 17 0.00036 35.5 9.9 129 135-275 107-277 (483)
89 PF07755 DUF1611: Protein of u 80.0 7.7 0.00017 36.3 7.5 171 61-241 34-253 (301)
90 COG0572 Udk Uridine kinase [Nu 79.8 2.5 5.4E-05 37.7 4.1 26 130-155 6-33 (218)
91 cd03109 DTBS Dethiobiotin synt 79.7 6.4 0.00014 31.9 6.3 66 138-219 8-79 (134)
92 PRK13235 nifH nitrogenase redu 79.6 2.2 4.8E-05 38.9 3.8 30 133-162 2-33 (274)
93 PRK11889 flhF flagellar biosyn 79.5 35 0.00075 33.6 12.0 30 133-162 242-273 (436)
94 PRK14493 putative bifunctional 79.5 2.3 4.9E-05 39.3 3.8 29 132-161 1-31 (274)
95 cd02028 UMPK_like Uridine mono 79.4 1.9 4.1E-05 37.0 3.1 28 134-161 1-30 (179)
96 COG4240 Predicted kinase [Gene 79.1 5.1 0.00011 36.3 5.7 48 113-161 32-82 (300)
97 PRK09270 nucleoside triphospha 78.7 4.5 9.8E-05 35.9 5.5 32 129-160 30-63 (229)
98 PF06564 YhjQ: YhjQ protein; 78.7 2.1 4.5E-05 38.9 3.2 30 134-163 6-35 (243)
99 PF10662 PduV-EutP: Ethanolami 78.6 7.7 0.00017 32.3 6.4 70 178-253 57-129 (143)
100 PF00448 SRP54: SRP54-type pro 78.5 2 4.3E-05 37.5 3.0 27 134-161 6-32 (196)
101 cd03116 MobB Molybdenum is an 78.0 3 6.5E-05 35.2 3.9 30 132-161 1-32 (159)
102 PRK00771 signal recognition pa 77.8 14 0.00031 36.4 9.0 31 132-162 95-127 (437)
103 PRK10037 cell division protein 77.5 2.8 6E-05 37.7 3.8 30 133-162 2-34 (250)
104 COG3954 PrkB Phosphoribulokina 77.2 3.1 6.6E-05 36.7 3.7 33 129-161 2-36 (289)
105 PRK13849 putative crown gall t 77.1 3 6.5E-05 37.4 3.8 95 133-230 2-126 (231)
106 COG2894 MinD Septum formation 77.0 3.1 6.7E-05 37.4 3.7 30 133-162 3-35 (272)
107 PRK13230 nitrogenase reductase 76.9 2.8 6E-05 38.3 3.7 30 133-162 2-33 (279)
108 PRK00784 cobyric acid synthase 76.5 2.8 6E-05 41.9 3.8 29 133-161 3-34 (488)
109 COG0541 Ffh Signal recognition 75.7 19 0.00041 35.5 9.0 28 134-162 105-132 (451)
110 cd02025 PanK Pantothenate kina 75.5 2.7 5.9E-05 37.3 3.1 23 134-156 1-25 (220)
111 PRK13234 nifH nitrogenase redu 75.2 3.6 7.8E-05 38.1 4.0 32 131-162 3-36 (295)
112 TIGR00064 ftsY signal recognit 74.7 4.4 9.5E-05 37.3 4.3 31 131-161 71-103 (272)
113 cd02117 NifH_like This family 74.6 2.7 5.9E-05 36.7 2.8 29 134-162 2-32 (212)
114 PF01656 CbiA: CobQ/CobB/MinD/ 74.1 2.7 5.9E-05 35.5 2.7 29 134-162 3-31 (195)
115 TIGR00041 DTMP_kinase thymidyl 74.1 5.5 0.00012 33.9 4.6 31 132-162 3-35 (195)
116 PRK14723 flhF flagellar biosyn 73.6 13 0.00029 39.2 8.0 30 132-161 185-218 (767)
117 PHA02518 ParA-like protein; Pr 73.6 2.9 6.2E-05 36.0 2.7 27 136-162 7-33 (211)
118 TIGR01425 SRP54_euk signal rec 73.4 54 0.0012 32.4 11.7 31 132-162 100-132 (429)
119 PTZ00451 dephospho-CoA kinase; 73.4 2.7 5.8E-05 38.1 2.5 21 132-152 1-23 (244)
120 KOG3347 Predicted nucleotide k 73.3 3.2 6.9E-05 35.1 2.7 24 131-154 6-31 (176)
121 PF13207 AAA_17: AAA domain; P 73.1 2.8 6E-05 32.7 2.3 25 134-161 1-27 (121)
122 PRK14495 putative molybdopteri 72.9 4 8.6E-05 40.3 3.7 31 132-162 1-33 (452)
123 cd02033 BchX Chlorophyllide re 72.7 5.4 0.00012 37.9 4.5 33 130-162 29-63 (329)
124 TIGR02880 cbbX_cfxQ probable R 72.1 2.8 6E-05 38.8 2.4 28 131-159 60-87 (284)
125 TIGR00682 lpxK tetraacyldisacc 72.0 8.3 0.00018 36.3 5.5 38 129-166 25-67 (311)
126 TIGR01968 minD_bact septum sit 71.8 4.7 0.0001 35.9 3.7 30 133-162 2-34 (261)
127 PF06309 Torsin: Torsin; Inte 71.7 8.6 0.00019 31.3 4.8 42 118-160 38-83 (127)
128 PRK09841 cryptic autophosphory 71.3 9.1 0.0002 40.2 6.2 48 115-162 512-564 (726)
129 PRK01906 tetraacyldisaccharide 71.2 8.8 0.00019 36.6 5.6 39 129-167 53-96 (338)
130 cd02036 MinD Bacterial cell di 70.5 4.1 9E-05 33.9 2.9 29 134-162 4-32 (179)
131 COG0552 FtsY Signal recognitio 69.7 7.4 0.00016 36.9 4.6 32 132-163 139-172 (340)
132 TIGR00176 mobB molybdopterin-g 69.5 4.5 9.7E-05 33.9 2.9 29 134-162 1-31 (155)
133 PRK13231 nitrogenase reductase 69.4 2.8 6.1E-05 37.9 1.8 29 133-162 3-33 (264)
134 PRK13233 nifH nitrogenase redu 69.0 6 0.00013 35.9 3.9 30 133-162 3-35 (275)
135 PRK03846 adenylylsulfate kinas 68.9 7.2 0.00016 33.7 4.2 32 131-162 23-56 (198)
136 PRK00889 adenylylsulfate kinas 68.9 6.9 0.00015 32.9 4.0 31 131-161 3-35 (175)
137 PRK10751 molybdopterin-guanine 68.8 6.6 0.00014 33.7 3.8 31 131-161 5-37 (173)
138 COG1618 Predicted nucleotide k 68.6 6 0.00013 33.9 3.4 31 133-163 6-38 (179)
139 cd01672 TMPK Thymidine monopho 68.1 7.8 0.00017 32.7 4.2 29 134-162 2-32 (200)
140 cd02032 Bchl_like This family 68.0 4.3 9.4E-05 36.7 2.7 25 138-162 8-32 (267)
141 COG1072 CoaA Panthothenate kin 67.7 5.2 0.00011 36.9 3.1 29 132-160 82-112 (283)
142 PF01121 CoaE: Dephospho-CoA k 67.6 3.6 7.8E-05 35.5 2.0 25 134-162 2-28 (180)
143 PF13614 AAA_31: AAA domain; P 67.5 6.3 0.00014 32.1 3.4 30 133-162 1-33 (157)
144 KOG3220 Similar to bacterial d 67.5 6.2 0.00014 34.9 3.4 27 132-162 1-29 (225)
145 COG5008 PilU Tfp pilus assembl 67.2 6.5 0.00014 36.5 3.6 56 85-154 93-148 (375)
146 TIGR01281 DPOR_bchL light-inde 67.2 4.4 9.6E-05 36.6 2.6 25 138-162 8-32 (268)
147 PRK11670 antiporter inner memb 67.1 6.8 0.00015 37.7 4.0 31 132-162 107-140 (369)
148 PRK12726 flagellar biosynthesi 67.0 59 0.0013 31.8 10.2 30 132-161 206-237 (407)
149 PRK05480 uridine/cytidine kina 66.9 5.6 0.00012 34.5 3.1 24 131-154 5-30 (209)
150 COG0125 Tmk Thymidylate kinase 66.5 5.6 0.00012 35.2 3.0 34 132-165 3-38 (208)
151 PRK12374 putative dithiobiotin 66.0 7.9 0.00017 34.4 3.9 28 134-161 4-34 (231)
152 PRK10867 signal recognition pa 65.8 72 0.0016 31.5 10.8 30 132-161 100-132 (433)
153 PRK11519 tyrosine kinase; Prov 65.5 15 0.00031 38.7 6.3 49 114-162 506-559 (719)
154 PRK01077 cobyrinic acid a,c-di 65.4 6.4 0.00014 38.9 3.5 30 132-161 3-35 (451)
155 TIGR00455 apsK adenylylsulfate 65.4 12 0.00027 31.6 4.9 31 131-161 17-49 (184)
156 PRK08233 hypothetical protein; 65.1 5.2 0.00011 33.5 2.4 23 132-154 3-27 (182)
157 PLN02924 thymidylate kinase 64.8 10 0.00023 33.6 4.4 35 128-162 12-48 (220)
158 cd02037 MRP-like MRP (Multiple 64.7 6.8 0.00015 32.8 3.1 27 136-162 6-32 (169)
159 CHL00072 chlL photochlorophyll 64.6 5.6 0.00012 36.8 2.8 25 138-162 8-32 (290)
160 PF13500 AAA_26: AAA domain; P 64.5 7.3 0.00016 33.5 3.3 28 134-161 2-32 (199)
161 PTZ00301 uridine kinase; Provi 64.1 6.5 0.00014 34.7 2.9 24 132-155 3-28 (210)
162 PF02223 Thymidylate_kin: Thym 63.6 4.7 0.0001 34.2 2.0 25 141-165 7-31 (186)
163 COG3172 NadR Predicted ATPase/ 63.5 6.7 0.00015 33.6 2.7 24 132-155 8-33 (187)
164 cd02034 CooC The accessory pro 63.4 7.3 0.00016 31.0 2.9 25 138-162 7-31 (116)
165 PRK13185 chlL protochlorophyll 63.3 5.9 0.00013 35.8 2.6 30 133-162 3-34 (270)
166 COG1797 CobB Cobyrinic acid a, 62.1 13 0.00028 36.6 4.8 21 141-161 12-32 (451)
167 cd02024 NRK1 Nicotinamide ribo 62.0 4.9 0.00011 34.9 1.7 21 134-154 1-23 (187)
168 cd02023 UMPK Uridine monophosp 61.9 5.6 0.00012 34.2 2.1 21 134-154 1-23 (198)
169 TIGR00959 ffh signal recogniti 61.6 40 0.00087 33.2 8.2 29 133-161 100-131 (428)
170 TIGR02016 BchX chlorophyllide 61.5 6.5 0.00014 36.5 2.6 25 138-162 8-32 (296)
171 PRK07933 thymidylate kinase; V 61.5 12 0.00026 33.0 4.2 31 134-164 2-34 (213)
172 cd02026 PRK Phosphoribulokinas 61.2 5.2 0.00011 36.8 1.9 28 134-161 1-30 (273)
173 TIGR01969 minD_arch cell divis 61.2 7.8 0.00017 34.3 3.0 27 136-162 7-33 (251)
174 PRK00090 bioD dithiobiotin syn 61.2 9.9 0.00021 33.3 3.6 21 141-161 11-31 (222)
175 PF01583 APS_kinase: Adenylyls 61.0 12 0.00026 31.6 3.9 32 132-163 2-35 (156)
176 PRK07429 phosphoribulokinase; 60.9 8.4 0.00018 36.5 3.2 28 131-158 7-36 (327)
177 PRK00698 tmk thymidylate kinas 60.6 15 0.00033 31.3 4.6 31 132-162 3-35 (205)
178 COG0556 UvrB Helicase subunit 60.6 11 0.00023 38.2 4.0 45 113-161 16-60 (663)
179 COG4088 Predicted nucleotide k 60.5 10 0.00022 33.9 3.5 31 132-162 1-33 (261)
180 COG4917 EutP Ethanolamine util 60.4 59 0.0013 26.8 7.5 70 181-257 61-133 (148)
181 COG1663 LpxK Tetraacyldisaccha 60.2 41 0.00089 32.0 7.6 38 129-166 44-86 (336)
182 PRK14734 coaE dephospho-CoA ki 59.6 7.5 0.00016 33.9 2.5 27 132-162 1-29 (200)
183 TIGR00379 cobB cobyrinic acid 59.3 11 0.00023 37.3 3.8 28 135-162 4-32 (449)
184 TIGR00750 lao LAO/AO transport 59.3 12 0.00026 34.7 4.0 32 130-161 32-65 (300)
185 COG0489 Mrp ATPases involved i 59.0 12 0.00027 34.1 3.9 32 131-162 56-90 (265)
186 PRK14730 coaE dephospho-CoA ki 58.3 11 0.00024 32.7 3.4 22 133-154 2-25 (195)
187 KOG2749 mRNA cleavage and poly 57.8 28 0.00061 33.5 6.1 49 113-161 84-134 (415)
188 PRK13236 nitrogenase reductase 57.5 9 0.0002 35.5 2.8 32 131-162 5-38 (296)
189 TIGR01287 nifH nitrogenase iro 57.5 8.4 0.00018 35.0 2.6 25 138-162 8-32 (275)
190 PRK14733 coaE dephospho-CoA ki 57.4 11 0.00023 33.3 3.1 23 132-154 6-30 (204)
191 PRK06547 hypothetical protein; 57.3 17 0.00036 31.0 4.2 24 131-154 14-39 (172)
192 PLN02422 dephospho-CoA kinase 57.3 8.5 0.00018 34.6 2.5 27 132-162 1-29 (232)
193 COG3640 CooC CO dehydrogenase 56.7 14 0.0003 33.5 3.7 29 134-162 2-33 (255)
194 COG1192 Soj ATPases involved i 55.7 11 0.00023 33.8 2.9 29 134-162 7-36 (259)
195 TIGR00152 dephospho-CoA kinase 55.7 7.5 0.00016 33.2 1.8 21 134-154 1-23 (188)
196 cd02022 DPCK Dephospho-coenzym 55.6 11 0.00023 32.1 2.7 24 134-161 1-26 (179)
197 TIGR00313 cobQ cobyric acid sy 55.6 10 0.00023 37.7 3.0 24 138-161 6-30 (475)
198 KOG3308 Uncharacterized protei 55.5 9 0.00019 33.9 2.2 24 132-155 4-29 (225)
199 PF12780 AAA_8: P-loop contain 55.0 7 0.00015 35.9 1.6 48 101-154 8-55 (268)
200 PF13521 AAA_28: AAA domain; P 55.0 6.4 0.00014 32.6 1.3 24 135-162 2-27 (163)
201 PF13238 AAA_18: AAA domain; P 54.8 9.1 0.0002 29.7 2.1 18 136-154 5-22 (129)
202 PRK14491 putative bifunctional 54.8 15 0.00032 37.8 4.1 32 130-161 8-41 (597)
203 COG3265 GntK Gluconate kinase 54.3 6.3 0.00014 33.2 1.1 18 136-154 2-19 (161)
204 PF01935 DUF87: Domain of unkn 54.3 11 0.00024 33.0 2.8 29 132-161 26-55 (229)
205 TIGR00235 udk uridine kinase. 53.5 13 0.00028 32.3 3.0 24 132-155 6-31 (207)
206 PRK13973 thymidylate kinase; P 53.4 14 0.0003 32.4 3.2 32 133-164 4-37 (213)
207 PF07015 VirC1: VirC1 protein; 52.7 11 0.00024 33.9 2.4 24 139-162 11-34 (231)
208 COG4555 NatA ABC-type Na+ tran 52.6 11 0.00023 33.7 2.3 30 131-160 27-58 (245)
209 cd00009 AAA The AAA+ (ATPases 52.5 26 0.00056 27.1 4.4 44 116-161 5-50 (151)
210 TIGR02782 TrbB_P P-type conjug 52.5 72 0.0016 29.7 8.0 74 134-218 134-214 (299)
211 PRK00081 coaE dephospho-CoA ki 52.4 11 0.00025 32.4 2.5 21 132-152 2-24 (194)
212 PRK14731 coaE dephospho-CoA ki 52.3 11 0.00024 33.0 2.4 20 133-152 6-27 (208)
213 PRK12377 putative replication 52.2 28 0.0006 31.6 5.0 29 134-162 103-133 (248)
214 TIGR02640 gas_vesic_GvpN gas v 52.1 13 0.00028 33.8 2.9 43 114-161 7-49 (262)
215 TIGR01005 eps_transp_fam exopo 51.8 30 0.00065 36.4 5.9 34 129-162 543-579 (754)
216 KOG3354 Gluconate kinase [Carb 51.6 12 0.00026 32.0 2.3 22 132-154 15-36 (191)
217 PRK10818 cell division inhibit 51.2 13 0.00029 33.5 2.8 30 133-162 3-35 (270)
218 PRK04040 adenylate kinase; Pro 51.0 14 0.0003 31.9 2.8 29 132-161 2-32 (188)
219 PLN02796 D-glycerate 3-kinase 50.6 16 0.00036 34.9 3.3 49 113-161 77-131 (347)
220 PLN02348 phosphoribulokinase 49.3 23 0.00049 34.5 4.1 26 131-156 48-75 (395)
221 PF08433 KTI12: Chromatin asso 49.2 18 0.00039 33.3 3.3 30 132-161 1-32 (270)
222 cd02019 NK Nucleoside/nucleoti 49.1 14 0.00031 26.1 2.2 21 134-154 1-23 (69)
223 COG1855 ATPase (PilT family) [ 49.1 9.5 0.00021 37.9 1.5 75 133-218 264-340 (604)
224 PRK03333 coaE dephospho-CoA ki 49.0 13 0.00028 36.1 2.5 21 132-152 1-23 (395)
225 COG0529 CysC Adenylylsulfate k 48.4 18 0.0004 31.4 3.0 36 131-166 22-59 (197)
226 CHL00175 minD septum-site dete 48.4 16 0.00035 33.2 2.9 31 132-162 15-48 (281)
227 COG1428 Deoxynucleoside kinase 47.8 17 0.00037 32.3 2.8 23 132-154 4-28 (216)
228 PRK14732 coaE dephospho-CoA ki 47.6 12 0.00026 32.6 1.8 19 134-152 1-21 (196)
229 PRK14490 putative bifunctional 46.8 23 0.00049 33.9 3.8 31 130-161 3-35 (369)
230 cd03243 ABC_MutS_homologs The 46.6 20 0.00044 30.9 3.1 22 133-154 30-53 (202)
231 PRK05541 adenylylsulfate kinas 46.5 37 0.0008 28.4 4.7 32 130-161 5-38 (176)
232 PRK05537 bifunctional sulfate 46.5 38 0.00083 34.6 5.5 46 116-161 376-424 (568)
233 cd00477 FTHFS Formyltetrahydro 45.8 28 0.0006 35.0 4.2 32 131-162 37-74 (524)
234 cd03114 ArgK-like The function 45.7 21 0.00046 29.4 3.0 27 135-161 2-30 (148)
235 COG1341 Predicted GTPase or GT 45.6 61 0.0013 31.6 6.4 49 113-161 51-104 (398)
236 PRK06995 flhF flagellar biosyn 45.6 2.6E+02 0.0057 28.0 11.1 30 132-161 256-289 (484)
237 PRK06762 hypothetical protein; 45.2 20 0.00043 29.6 2.8 22 133-154 3-26 (166)
238 COG5271 MDN1 AAA ATPase contai 44.9 27 0.00058 40.7 4.2 53 100-154 433-488 (4600)
239 PF01268 FTHFS: Formate--tetra 44.9 25 0.00055 35.6 3.8 35 129-163 51-91 (557)
240 PF07085 DRTGG: DRTGG domain; 44.8 1E+02 0.0022 23.5 6.6 80 31-121 1-102 (105)
241 KOG2183 Prolylcarboxypeptidase 44.4 1.5E+02 0.0032 29.4 8.6 105 48-160 68-189 (492)
242 PRK05703 flhF flagellar biosyn 44.2 40 0.00087 33.1 5.1 29 133-161 222-254 (424)
243 PLN03046 D-glycerate 3-kinase; 44.1 26 0.00056 34.7 3.6 31 131-161 211-243 (460)
244 cd03111 CpaE_like This protein 43.9 23 0.0005 27.3 2.8 47 135-194 5-52 (106)
245 PRK00300 gmk guanylate kinase; 43.7 20 0.00042 30.8 2.6 25 131-155 4-30 (205)
246 PRK13507 formate--tetrahydrofo 43.7 32 0.00069 35.0 4.2 32 131-162 62-99 (587)
247 TIGR00150 HI0065_YjeE ATPase, 43.5 39 0.00085 27.6 4.1 23 132-154 22-46 (133)
248 PRK13695 putative NTPase; Prov 43.1 31 0.00067 28.9 3.7 28 134-161 2-31 (174)
249 KOG3022 Predicted ATPase, nucl 42.7 23 0.00049 32.9 2.8 30 133-162 48-80 (300)
250 PRK14964 DNA polymerase III su 42.2 1.5E+02 0.0032 29.8 8.8 21 134-155 40-60 (491)
251 PLN02974 adenosylmethionine-8- 42.1 29 0.00063 37.1 3.9 31 131-161 26-59 (817)
252 PF13604 AAA_30: AAA domain; P 42.1 33 0.00071 29.7 3.7 30 134-163 20-51 (196)
253 TIGR00347 bioD dethiobiotin sy 41.7 24 0.00051 29.2 2.7 24 139-162 7-30 (166)
254 cd02027 APSK Adenosine 5'-phos 41.2 38 0.00082 27.8 3.8 28 135-162 2-31 (149)
255 KOG1805 DNA replication helica 41.1 37 0.00081 36.7 4.5 30 132-162 688-717 (1100)
256 PRK06835 DNA replication prote 41.1 49 0.0011 31.4 5.0 33 130-163 184-216 (329)
257 PRK06217 hypothetical protein; 41.0 22 0.00048 30.1 2.5 21 134-154 3-25 (183)
258 PRK13886 conjugal transfer pro 41.0 28 0.0006 31.6 3.1 26 137-162 10-35 (241)
259 COG1102 Cmk Cytidylate kinase 40.8 37 0.0008 29.2 3.6 26 134-162 2-29 (179)
260 PF09140 MipZ: ATPase MipZ; I 40.7 21 0.00045 32.7 2.3 29 134-162 2-33 (261)
261 PRK06761 hypothetical protein; 40.6 20 0.00044 33.2 2.2 30 133-162 4-35 (282)
262 TIGR02322 phosphon_PhnN phosph 40.3 23 0.00049 29.7 2.4 23 133-155 2-26 (179)
263 PRK14709 hypothetical protein; 40.2 49 0.0011 33.0 5.0 19 138-156 213-231 (469)
264 COG1089 Gmd GDP-D-mannose dehy 40.1 67 0.0014 30.2 5.5 80 133-222 6-91 (345)
265 PRK01184 hypothetical protein; 39.9 33 0.00071 28.9 3.3 28 132-163 1-30 (184)
266 PRK00131 aroK shikimate kinase 39.9 30 0.00066 28.3 3.1 23 132-154 4-28 (175)
267 cd02038 FleN-like FleN is a me 39.8 29 0.00064 28.0 2.9 52 134-195 4-55 (139)
268 PRK06197 short chain dehydroge 39.8 1.2E+02 0.0027 27.5 7.4 72 128-203 12-85 (306)
269 cd05017 SIS_PGI_PMI_1 The memb 39.5 1E+02 0.0022 24.0 6.0 74 55-155 40-115 (119)
270 PRK08181 transposase; Validate 39.1 65 0.0014 29.6 5.3 38 124-163 102-139 (269)
271 TIGR01613 primase_Cterm phage/ 39.0 58 0.0013 30.1 5.1 23 134-157 81-103 (304)
272 PF12846 AAA_10: AAA-like doma 38.9 24 0.00053 31.6 2.5 29 132-161 4-32 (304)
273 PLN02759 Formate--tetrahydrofo 38.8 46 0.001 34.2 4.6 32 131-162 68-106 (637)
274 PF02374 ArsA_ATPase: Anion-tr 38.7 25 0.00054 32.9 2.6 26 137-162 8-33 (305)
275 TIGR03499 FlhF flagellar biosy 38.2 94 0.002 28.5 6.3 30 132-161 194-227 (282)
276 TIGR01360 aden_kin_iso1 adenyl 38.0 33 0.00072 28.6 3.1 23 132-154 3-27 (188)
277 PRK07231 fabG 3-ketoacyl-(acyl 37.9 1.7E+02 0.0036 25.3 7.7 79 132-215 5-88 (251)
278 PF05872 DUF853: Bacterial pro 37.7 30 0.00065 34.4 3.0 30 132-162 22-51 (502)
279 PRK13947 shikimate kinase; Pro 37.6 31 0.00067 28.5 2.8 25 134-161 3-29 (171)
280 PRK05854 short chain dehydroge 37.4 1.5E+02 0.0033 27.2 7.7 74 129-204 11-84 (313)
281 COG0455 flhG Antiactivator of 37.3 42 0.00092 30.7 3.8 29 132-160 2-34 (262)
282 PRK05800 cobU adenosylcobinami 37.3 1.3E+02 0.0029 25.3 6.7 78 134-218 3-86 (170)
283 PRK13896 cobyrinic acid a,c-di 37.0 36 0.00078 33.6 3.5 28 134-161 3-33 (433)
284 cd01674 Homoaconitase_Swivel H 36.8 53 0.0012 26.8 3.8 50 54-107 41-100 (129)
285 PRK13505 formate--tetrahydrofo 36.7 47 0.001 33.8 4.2 32 131-162 54-91 (557)
286 PRK08099 bifunctional DNA-bind 36.7 40 0.00088 32.8 3.8 24 131-154 218-243 (399)
287 PRK13506 formate--tetrahydrofo 36.5 42 0.00092 34.1 3.9 32 131-162 53-90 (578)
288 PF07693 KAP_NTPase: KAP famil 36.3 70 0.0015 29.4 5.2 38 120-157 7-47 (325)
289 PRK06526 transposase; Provisio 36.1 52 0.0011 29.9 4.2 44 117-162 85-130 (254)
290 cd03223 ABCD_peroxisomal_ALDP 35.6 23 0.00049 29.6 1.6 25 132-156 27-53 (166)
291 PRK13889 conjugal transfer rel 35.4 34 0.00074 37.3 3.3 29 134-163 367-395 (988)
292 PRK13826 Dtr system oriT relax 35.2 33 0.00072 37.9 3.1 29 134-163 402-430 (1102)
293 PRK06731 flhF flagellar biosyn 35.0 3.3E+02 0.0072 25.0 9.3 30 132-161 75-106 (270)
294 PF00005 ABC_tran: ABC transpo 34.7 24 0.00051 27.9 1.6 24 132-155 11-36 (137)
295 TIGR01650 PD_CobS cobaltochela 34.6 44 0.00095 31.7 3.5 25 130-155 65-89 (327)
296 PRK13768 GTPase; Provisional 34.3 38 0.00083 30.6 3.0 29 134-162 4-34 (253)
297 cd03283 ABC_MutS-like MutS-lik 34.2 40 0.00087 29.2 3.0 29 133-161 26-58 (199)
298 PRK06278 cobyrinic acid a,c-di 34.2 39 0.00085 33.7 3.3 27 131-157 237-266 (476)
299 COG0703 AroK Shikimate kinase 33.8 29 0.00063 29.8 2.0 22 132-154 5-26 (172)
300 PRK07261 topology modulation p 33.8 37 0.0008 28.6 2.7 20 135-154 3-24 (171)
301 KOG1970 Checkpoint RAD17-RFC c 33.7 71 0.0015 32.6 4.9 44 113-161 93-138 (634)
302 PRK08903 DnaA regulatory inact 33.6 77 0.0017 27.6 4.8 29 134-162 44-74 (227)
303 PRK08154 anaerobic benzoate ca 33.6 63 0.0014 30.1 4.4 28 132-162 133-162 (309)
304 cd00550 ArsA_ATPase Oxyanion-t 33.4 33 0.00072 30.9 2.5 25 138-162 8-32 (254)
305 COG4133 CcmA ABC-type transpor 33.3 40 0.00086 29.7 2.7 32 132-163 28-61 (209)
306 PF04851 ResIII: Type III rest 33.3 46 0.00099 27.2 3.1 39 115-154 9-50 (184)
307 cd03255 ABC_MJ0796_Lo1CDE_FtsE 33.1 25 0.00053 30.5 1.5 24 132-155 30-55 (218)
308 cd03273 ABC_SMC2_euk Eukaryoti 32.9 46 0.00099 29.7 3.3 25 131-155 24-50 (251)
309 cd03229 ABC_Class3 This class 32.8 23 0.0005 29.8 1.3 24 132-155 26-51 (178)
310 cd03115 SRP The signal recogni 32.8 39 0.00084 28.1 2.6 29 134-162 2-32 (173)
311 COG3367 Uncharacterized conser 32.6 57 0.0012 30.9 3.8 174 75-261 87-309 (339)
312 PRK13975 thymidylate kinase; P 32.6 39 0.00085 28.6 2.7 23 133-155 3-27 (196)
313 PRK13976 thymidylate kinase; P 32.4 41 0.0009 29.5 2.8 45 207-252 123-178 (209)
314 cd01131 PilT Pilus retraction 32.2 64 0.0014 27.8 4.0 21 134-154 3-25 (198)
315 TIGR02173 cyt_kin_arch cytidyl 31.9 37 0.00079 27.9 2.3 25 134-161 2-28 (171)
316 TIGR03420 DnaA_homol_Hda DnaA 31.9 82 0.0018 27.2 4.7 29 133-161 39-69 (226)
317 COG1066 Sms Predicted ATP-depe 31.8 1.7E+02 0.0038 28.9 7.0 114 132-250 93-214 (456)
318 KOG3062 RNA polymerase II elon 31.6 61 0.0013 29.4 3.7 29 132-160 1-31 (281)
319 PRK10436 hypothetical protein; 31.4 47 0.001 33.1 3.3 20 134-153 220-242 (462)
320 PTZ00386 formyl tetrahydrofola 31.3 60 0.0013 33.3 4.0 32 131-162 67-105 (625)
321 PRK07078 hypothetical protein; 31.0 73 0.0016 33.8 4.8 43 113-156 471-517 (759)
322 KOG0447 Dynamin-like GTP bindi 31.0 45 0.00098 34.0 3.0 24 130-153 306-331 (980)
323 cd02020 CMPK Cytidine monophos 30.9 39 0.00084 26.8 2.3 25 134-161 1-27 (147)
324 TIGR01313 therm_gnt_kin carboh 30.9 29 0.00062 28.6 1.5 14 141-154 9-22 (163)
325 COG5623 CLP1 Predicted GTPase 30.7 91 0.002 29.6 4.8 44 113-161 83-130 (424)
326 PRK04182 cytidylate kinase; Pr 30.6 39 0.00084 27.9 2.3 21 134-154 2-24 (180)
327 cd03226 ABC_cobalt_CbiO_domain 30.6 28 0.00061 29.9 1.5 24 132-155 26-51 (205)
328 cd01130 VirB11-like_ATPase Typ 30.5 75 0.0016 27.0 4.1 24 132-155 25-50 (186)
329 PRK13946 shikimate kinase; Pro 30.4 45 0.00097 28.3 2.7 22 133-154 11-34 (184)
330 PRK15177 Vi polysaccharide exp 30.1 36 0.00078 29.7 2.1 30 132-161 13-44 (213)
331 cd03259 ABC_Carb_Solutes_like 30.1 29 0.00063 30.0 1.4 24 132-155 26-51 (213)
332 cd03281 ABC_MSH5_euk MutS5 hom 29.9 66 0.0014 28.2 3.7 29 133-161 30-62 (213)
333 PF07931 CPT: Chloramphenicol 29.9 24 0.00051 30.3 0.8 21 134-154 3-25 (174)
334 cd01976 Nitrogenase_MoFe_alpha 29.7 5E+02 0.011 25.3 10.2 61 100-163 243-328 (421)
335 PRK14869 putative manganese-de 29.5 2.8E+02 0.0061 27.9 8.6 85 27-123 138-244 (546)
336 PF13476 AAA_23: AAA domain; P 29.5 44 0.00096 27.8 2.5 24 132-155 19-44 (202)
337 PF01695 IstB_IS21: IstB-like 29.4 66 0.0014 27.4 3.5 29 134-162 49-79 (178)
338 PRK09183 transposase/IS protei 28.9 82 0.0018 28.6 4.2 30 134-163 104-135 (259)
339 PRK09825 idnK D-gluconate kina 28.4 52 0.0011 27.9 2.7 22 133-154 4-27 (176)
340 cd02035 ArsA ArsA ATPase funct 28.3 56 0.0012 28.6 3.0 24 138-161 7-30 (217)
341 PRK09111 DNA polymerase III su 28.2 2.9E+02 0.0063 28.5 8.4 21 133-154 50-70 (598)
342 cd01121 Sms Sms (bacterial rad 28.2 5.1E+02 0.011 24.9 9.7 113 132-247 82-201 (372)
343 TIGR02768 TraA_Ti Ti-type conj 28.1 57 0.0012 34.5 3.5 29 133-162 372-400 (744)
344 PF00437 T2SE: Type II/IV secr 28.0 39 0.00084 30.4 2.0 25 133-157 128-154 (270)
345 COG1474 CDC6 Cdc6-related prot 27.9 73 0.0016 30.6 3.9 25 132-157 45-69 (366)
346 PRK09518 bifunctional cytidyla 27.9 47 0.001 34.8 2.8 22 133-154 2-25 (712)
347 TIGR02533 type_II_gspE general 27.9 58 0.0013 32.6 3.3 20 134-153 244-266 (486)
348 COG2759 MIS1 Formyltetrahydrof 27.8 52 0.0011 32.7 2.8 34 129-162 49-88 (554)
349 cd03294 ABC_Pro_Gly_Bertaine T 27.4 34 0.00074 31.0 1.5 24 132-155 50-75 (269)
350 COG1131 CcmA ABC-type multidru 27.3 32 0.0007 31.8 1.3 29 132-160 31-61 (293)
351 PRK10463 hydrogenase nickel in 27.0 1.5E+02 0.0033 27.6 5.6 26 129-154 101-128 (290)
352 TIGR01166 cbiO cobalt transpor 26.8 34 0.00074 29.0 1.3 24 132-155 18-43 (190)
353 KOG0635 Adenosine 5'-phosphosu 26.8 1.3E+02 0.0028 25.8 4.6 42 131-173 30-73 (207)
354 cd03278 ABC_SMC_barmotin Barmo 26.7 54 0.0012 28.3 2.6 21 134-154 24-46 (197)
355 COG2804 PulE Type II secretory 26.7 66 0.0014 32.3 3.4 28 134-161 260-289 (500)
356 PRK13394 3-hydroxybutyrate deh 26.6 2.9E+02 0.0062 24.0 7.3 68 131-203 6-74 (262)
357 PRK05632 phosphate acetyltrans 26.6 73 0.0016 33.3 3.9 81 138-218 10-116 (684)
358 COG1419 FlhF Flagellar GTP-bin 26.5 4.6E+02 0.01 25.7 9.0 55 113-168 182-244 (407)
359 PF05673 DUF815: Protein of un 26.5 1.9E+02 0.0042 26.3 6.1 36 127-163 50-85 (249)
360 cd03222 ABC_RNaseL_inhibitor T 26.5 38 0.00082 28.9 1.5 25 132-156 25-51 (177)
361 PRK00023 cmk cytidylate kinase 26.5 57 0.0012 28.9 2.7 22 133-154 5-28 (225)
362 PF08303 tRNA_lig_kinase: tRNA 26.2 33 0.00072 29.3 1.1 19 135-154 5-23 (168)
363 PRK10247 putative ABC transpor 26.2 46 0.00099 29.2 2.0 24 132-155 33-58 (225)
364 smart00053 DYNc Dynamin, GTPas 26.1 1E+02 0.0022 27.8 4.3 25 129-153 23-49 (240)
365 cd00227 CPT Chloramphenicol (C 26.0 65 0.0014 26.9 2.9 22 133-154 3-26 (175)
366 PRK13537 nodulation ABC transp 26.0 33 0.00071 31.9 1.1 25 132-156 33-59 (306)
367 PRK13851 type IV secretion sys 25.9 48 0.001 31.7 2.2 22 133-154 163-186 (344)
368 PRK11248 tauB taurine transpor 25.9 37 0.00081 30.5 1.4 24 132-155 27-52 (255)
369 PRK08118 topology modulation p 25.8 66 0.0014 27.0 2.9 78 134-220 3-90 (167)
370 PF03266 NTPase_1: NTPase; In 25.8 78 0.0017 26.8 3.3 29 135-163 2-32 (168)
371 PRK12727 flagellar biosynthesi 25.7 7.4E+02 0.016 25.4 11.8 31 131-161 349-383 (559)
372 COG1159 Era GTPase [General fu 25.7 5.6E+02 0.012 24.0 9.4 141 61-204 5-164 (298)
373 cd03280 ABC_MutS2 MutS2 homolo 25.6 70 0.0015 27.5 3.1 19 133-151 29-49 (200)
374 TIGR00017 cmk cytidylate kinas 25.6 61 0.0013 28.6 2.7 22 133-154 3-26 (217)
375 PF13555 AAA_29: P-loop contai 25.5 78 0.0017 22.3 2.7 22 133-154 24-47 (62)
376 cd03232 ABC_PDR_domain2 The pl 25.5 57 0.0012 27.8 2.5 23 132-154 33-57 (192)
377 COG2019 AdkA Archaeal adenylat 25.5 75 0.0016 27.5 3.0 23 132-154 4-28 (189)
378 PHA02575 1 deoxynucleoside mon 25.4 56 0.0012 29.4 2.4 19 134-152 2-22 (227)
379 cd03263 ABC_subfamily_A The AB 25.3 39 0.00085 29.3 1.4 24 132-155 28-53 (220)
380 PRK14528 adenylate kinase; Pro 25.1 70 0.0015 27.3 2.9 22 133-154 2-25 (186)
381 cd03225 ABC_cobalt_CbiO_domain 25.1 43 0.00093 28.8 1.6 24 132-155 27-52 (211)
382 cd03256 ABC_PhnC_transporter A 25.1 43 0.00092 29.5 1.6 24 132-155 27-52 (241)
383 PRK13540 cytochrome c biogenes 24.8 62 0.0013 27.7 2.6 24 132-155 27-52 (200)
384 PRK10744 pstB phosphate transp 24.7 51 0.0011 29.5 2.1 24 132-155 39-64 (260)
385 PRK13652 cbiO cobalt transport 24.7 38 0.00083 30.8 1.3 24 132-155 30-55 (277)
386 cd03260 ABC_PstB_phosphate_tra 24.6 63 0.0014 28.1 2.6 23 132-154 26-50 (227)
387 PRK13900 type IV secretion sys 24.5 87 0.0019 29.7 3.7 27 134-161 162-190 (332)
388 TIGR03263 guanyl_kin guanylate 24.4 53 0.0012 27.3 2.0 22 133-154 2-25 (180)
389 cd03253 ABCC_ATM1_transporter 24.3 49 0.0011 29.0 1.9 24 132-155 27-52 (236)
390 PLN02318 phosphoribulokinase/u 24.3 72 0.0016 33.1 3.2 24 131-154 64-89 (656)
391 cd02021 GntK Gluconate kinase 24.2 49 0.0011 26.7 1.7 18 136-154 6-23 (150)
392 PRK10584 putative ABC transpor 24.1 46 0.00099 29.1 1.6 24 132-155 36-61 (228)
393 TIGR00035 asp_race aspartate r 24.1 2.9E+02 0.0062 24.3 6.8 30 132-162 117-146 (229)
394 cd03265 ABC_DrrA DrrA is the A 24.1 45 0.00098 29.0 1.6 24 132-155 26-51 (220)
395 PRK13833 conjugal transfer pro 23.9 76 0.0016 30.0 3.1 37 28-70 10-49 (323)
396 KOG0991 Replication factor C, 23.9 1.4E+02 0.0031 27.4 4.6 38 113-155 34-73 (333)
397 PRK14951 DNA polymerase III su 23.9 7.7E+02 0.017 25.6 10.6 23 133-155 39-63 (618)
398 TIGR02673 FtsE cell division A 23.8 42 0.00091 28.9 1.3 24 132-155 28-53 (214)
399 cd03293 ABC_NrtD_SsuB_transpor 23.8 39 0.00084 29.4 1.1 24 132-155 30-55 (220)
400 PRK10908 cell division protein 23.8 65 0.0014 28.0 2.6 24 132-155 28-53 (222)
401 PRK08084 DNA replication initi 23.7 1.3E+02 0.0029 26.6 4.6 45 116-162 31-77 (235)
402 PF01202 SKI: Shikimate kinase 23.7 43 0.00093 27.7 1.3 14 141-154 3-16 (158)
403 TIGR03608 L_ocin_972_ABC putat 23.5 47 0.001 28.4 1.5 24 132-155 24-49 (206)
404 cd03272 ABC_SMC3_euk Eukaryoti 23.5 84 0.0018 27.6 3.2 23 132-154 23-47 (243)
405 cd03231 ABC_CcmA_heme_exporter 23.4 43 0.00093 28.8 1.3 24 132-155 26-51 (201)
406 cd03221 ABCF_EF-3 ABCF_EF-3 E 23.4 44 0.00096 27.2 1.3 23 132-154 26-50 (144)
407 PRK14274 phosphate ABC transpo 23.4 70 0.0015 28.6 2.7 24 132-155 38-63 (259)
408 cd03213 ABCG_EPDR ABCG transpo 23.4 48 0.001 28.3 1.6 23 132-154 35-59 (194)
409 cd03250 ABCC_MRP_domain1 Domai 23.4 55 0.0012 28.1 1.9 25 132-156 31-57 (204)
410 PRK04220 2-phosphoglycerate ki 23.3 1.2E+02 0.0026 28.5 4.2 23 132-154 92-116 (301)
411 PF06418 CTP_synth_N: CTP synt 23.3 1.1E+02 0.0025 28.2 4.0 29 133-161 2-34 (276)
412 TIGR02855 spore_yabG sporulati 23.2 88 0.0019 29.0 3.2 47 185-235 132-182 (283)
413 KOG1371 UDP-glucose 4-epimeras 23.2 5.1E+02 0.011 24.8 8.3 79 133-214 3-83 (343)
414 cd03237 ABC_RNaseL_inhibitor_d 23.2 49 0.0011 29.7 1.6 25 132-156 25-51 (246)
415 PF00004 AAA: ATPase family as 23.0 59 0.0013 25.0 1.9 19 136-154 2-22 (132)
416 cd03300 ABC_PotA_N PotA is an 23.0 47 0.001 29.2 1.5 25 132-156 26-52 (232)
417 PRK09493 glnQ glutamine ABC tr 23.0 68 0.0015 28.3 2.5 24 132-155 27-52 (240)
418 PRK04296 thymidine kinase; Pro 23.0 1.3E+02 0.0028 25.7 4.2 30 133-162 3-34 (190)
419 COG4167 SapF ABC-type antimicr 23.0 62 0.0014 28.6 2.1 29 132-160 39-69 (267)
420 PRK03731 aroL shikimate kinase 22.9 81 0.0018 26.0 2.9 25 134-161 4-30 (171)
421 PRK14235 phosphate transporter 22.9 69 0.0015 28.9 2.6 24 132-155 45-70 (267)
422 PF00142 Fer4_NifH: 4Fe-4S iro 22.9 68 0.0015 29.6 2.5 24 139-162 9-32 (273)
423 TIGR02770 nickel_nikD nickel i 22.8 49 0.0011 29.1 1.6 24 132-155 12-37 (230)
424 PRK08533 flagellar accessory p 22.8 1.3E+02 0.0029 26.6 4.4 30 132-162 24-56 (230)
425 PRK09186 flagellin modificatio 22.4 3.9E+02 0.0085 23.1 7.4 82 132-215 4-90 (256)
426 TIGR00960 3a0501s02 Type II (G 22.3 46 0.001 28.8 1.3 24 132-155 29-54 (216)
427 cd00544 CobU Adenosylcobinamid 22.3 4.3E+02 0.0093 22.2 7.2 77 135-218 2-83 (169)
428 COG4096 HsdR Type I site-speci 22.2 1.2E+02 0.0026 32.5 4.4 42 115-158 171-213 (875)
429 PRK02496 adk adenylate kinase; 22.2 86 0.0019 26.3 2.9 21 134-154 3-25 (184)
430 TIGR02315 ABC_phnC phosphonate 22.2 51 0.0011 29.0 1.6 24 132-155 28-53 (243)
431 TIGR01420 pilT_fam pilus retra 22.2 99 0.0022 29.2 3.6 22 133-154 123-146 (343)
432 PRK11629 lolD lipoprotein tran 22.2 50 0.0011 29.0 1.5 24 132-155 35-60 (233)
433 PRK14530 adenylate kinase; Pro 22.2 77 0.0017 27.5 2.7 21 134-154 5-27 (215)
434 PRK13894 conjugal transfer ATP 22.2 74 0.0016 30.0 2.7 36 29-70 15-53 (319)
435 cd03274 ABC_SMC4_euk Eukaryoti 22.1 84 0.0018 27.5 2.9 22 133-154 26-49 (212)
436 cd03269 ABC_putative_ATPase Th 22.1 74 0.0016 27.3 2.5 24 132-155 26-51 (210)
437 PRK05632 phosphate acetyltrans 22.1 6.4E+02 0.014 26.4 9.8 87 27-124 202-318 (684)
438 PRK14960 DNA polymerase III su 22.0 7E+02 0.015 26.4 9.8 19 135-154 43-61 (702)
439 PRK13650 cbiO cobalt transport 22.0 49 0.0011 30.2 1.4 24 132-155 33-58 (279)
440 PRK13538 cytochrome c biogenes 22.0 49 0.0011 28.5 1.3 26 132-157 27-54 (204)
441 smart00534 MUTSac ATPase domai 22.0 69 0.0015 27.2 2.3 19 134-152 1-21 (185)
442 cd03266 ABC_NatA_sodium_export 21.8 54 0.0012 28.3 1.6 24 132-155 31-56 (218)
443 PRK13477 bifunctional pantoate 21.8 76 0.0016 32.1 2.8 24 131-154 283-308 (512)
444 PRK12338 hypothetical protein; 21.7 74 0.0016 30.1 2.6 23 132-154 4-28 (319)
445 cd03267 ABC_NatA_like Similar 21.6 51 0.0011 29.1 1.4 24 132-155 47-72 (236)
446 COG0504 PyrG CTP synthase (UTP 21.5 1.1E+02 0.0025 30.6 3.9 28 134-161 3-34 (533)
447 cd03252 ABCC_Hemolysin The ABC 21.5 59 0.0013 28.6 1.8 25 132-156 28-54 (237)
448 cd01120 RecA-like_NTPases RecA 21.5 1.1E+02 0.0024 24.1 3.4 27 135-161 2-30 (165)
449 KOG1502 Flavonol reductase/cin 21.5 3.8E+02 0.0081 25.5 7.2 70 131-203 5-75 (327)
450 TIGR02525 plasmid_TraJ plasmid 21.4 51 0.0011 31.8 1.5 21 134-154 151-173 (372)
451 cd03247 ABCC_cytochrome_bd The 21.4 59 0.0013 27.2 1.7 24 132-155 28-53 (178)
452 cd03292 ABC_FtsE_transporter F 21.4 53 0.0012 28.2 1.5 24 132-155 27-52 (214)
453 COG0003 ArsA Predicted ATPase 21.4 78 0.0017 29.9 2.7 29 133-161 3-33 (322)
454 PRK13541 cytochrome c biogenes 21.4 55 0.0012 27.9 1.5 24 132-155 26-51 (195)
455 PRK13539 cytochrome c biogenes 21.3 53 0.0011 28.4 1.4 24 132-155 28-53 (207)
456 cd03258 ABC_MetN_methionine_tr 21.2 56 0.0012 28.6 1.6 25 132-156 31-57 (233)
457 TIGR02538 type_IV_pilB type IV 21.2 78 0.0017 32.3 2.8 14 134-147 318-333 (564)
458 TIGR00416 sms DNA repair prote 21.2 5.5E+02 0.012 25.4 8.7 112 132-246 94-212 (454)
459 cd03282 ABC_MSH4_euk MutS4 hom 21.1 93 0.002 27.1 3.0 23 132-154 29-53 (204)
460 COG2255 RuvB Holliday junction 21.1 1.5E+02 0.0033 27.9 4.4 31 134-168 57-87 (332)
461 cd03369 ABCC_NFT1 Domain 2 of 21.1 67 0.0015 27.6 2.0 24 132-155 34-59 (207)
462 PRK14251 phosphate ABC transpo 20.8 69 0.0015 28.4 2.1 24 132-155 30-55 (251)
463 TIGR00073 hypB hydrogenase acc 20.7 2.4E+02 0.0052 24.2 5.5 26 129-154 19-46 (207)
464 COG1348 NifH Nitrogenase subun 20.6 95 0.0021 28.4 2.9 29 134-162 3-33 (278)
465 PRK11153 metN DL-methionine tr 20.6 52 0.0011 31.1 1.4 24 132-155 31-56 (343)
466 PRK10217 dTDP-glucose 4,6-dehy 20.6 6.1E+02 0.013 23.3 8.7 80 133-215 2-81 (355)
467 TIGR00972 3a0107s01c2 phosphat 20.6 62 0.0013 28.7 1.7 24 132-155 27-52 (247)
468 cd03240 ABC_Rad50 The catalyti 20.6 1E+02 0.0022 26.7 3.1 22 133-154 23-46 (204)
469 PRK14722 flhF flagellar biosyn 20.5 3.7E+02 0.008 26.0 7.1 30 132-161 137-170 (374)
470 cd00267 ABC_ATPase ABC (ATP-bi 20.5 59 0.0013 26.6 1.5 24 132-155 25-50 (157)
471 TIGR02324 CP_lyasePhnL phospho 20.4 60 0.0013 28.2 1.6 25 132-156 34-60 (224)
472 cd03235 ABC_Metallic_Cations A 20.3 50 0.0011 28.5 1.1 24 132-155 25-50 (213)
473 PRK08727 hypothetical protein; 20.3 1.6E+02 0.0035 26.0 4.4 30 134-163 43-74 (233)
474 TIGR02769 nickel_nikE nickel i 20.2 53 0.0012 29.6 1.3 24 132-155 37-62 (265)
475 PRK11823 DNA repair protein Ra 20.2 7.5E+02 0.016 24.3 9.4 112 132-246 80-198 (446)
476 TIGR03864 PQQ_ABC_ATP ABC tran 20.2 85 0.0018 27.6 2.5 24 132-155 27-52 (236)
477 cd03214 ABC_Iron-Siderophores_ 20.2 59 0.0013 27.3 1.5 30 132-161 25-56 (180)
478 cd03249 ABC_MTABC3_MDL1_MDL2 M 20.2 63 0.0014 28.4 1.7 25 132-156 29-55 (238)
479 PRK04175 rpl7ae 50S ribosomal 20.2 3.6E+02 0.0078 21.5 6.0 30 100-139 73-102 (122)
480 cd03262 ABC_HisP_GlnQ_permease 20.2 59 0.0013 27.9 1.5 24 132-155 26-51 (213)
481 PTZ00222 60S ribosomal protein 20.2 4.7E+02 0.01 24.0 7.2 71 73-154 135-220 (263)
482 COG4586 ABC-type uncharacteriz 20.1 74 0.0016 29.8 2.1 30 132-161 50-81 (325)
483 cd00464 SK Shikimate kinase (S 20.0 91 0.002 24.9 2.5 20 134-154 4-23 (154)
No 1
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.3e-53 Score=418.44 Aligned_cols=264 Identities=32% Similarity=0.454 Sum_probs=230.4
Q ss_pred CccCHHHHHHHcCCeeccc--CCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC---C
Q 022062 25 PIWTINEIAESVNGKILKW--GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---W 99 (303)
Q Consensus 25 ~~~~l~~l~~~~~~~~~~~--~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~---~ 99 (303)
++|++.+|++.++|.+.+. ..+++|++|||.++| |+||||++|+++|||+|+++|++ +||+++|++++... .
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~i~~i~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~~v~~~~~~~~~~~ 81 (479)
T PRK14093 5 PLWTSDAMAEAMGATRSGALPRDVTGISIDSRTLAP--GDAYFAIKGDVHDGHAFVAAALK-AGAALAVVERAQRDKFAA 81 (479)
T ss_pred CccCHHHHHHHhCCeecCCCCCceeEEEeecCCCCC--CCEEEEeccCcCChHHHHHHHHH-cCCcEEEEecccccccCC
Confidence 4689999999999987632 349999999999999 99999999999999999999999 99999999864211 2
Q ss_pred CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHh
Q 022062 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179 (303)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~ 179 (303)
++|+++|+ |++++|+.||++|+. ..++++||||||||||||++||+++|+..|. +..+.|++|+.+|.|+++.
T Consensus 82 ~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~-~~~~~g~~n~~iG~p~~l~ 154 (479)
T PRK14093 82 DAPLLVVD-----DVLAALRDLGRAARA-RLEAKVIAVTGSVGKTSTKEALRGVLGAQGE-THASVASFNNHWGVPLSLA 154 (479)
T ss_pred CCCEEEEC-----CHHHHHHHHHHHHHH-hcCCCEEEEcCCCCccHHHHHHHHHHHhcCC-ccCCCccCCCccchhHHHH
Confidence 57999999 999999999995554 4678999999999999999999999977665 4568999999999999999
Q ss_pred cccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhh
Q 022062 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259 (303)
Q Consensus 180 ~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~ 259 (303)
++..+++++|||+|+++.++++++...++|+++|||||++||+|+|+|+|+|+++|.+||+.+++++.+|+|.|||+...
T Consensus 155 ~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~ 234 (479)
T PRK14093 155 RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDR 234 (479)
T ss_pred cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHH
Confidence 88888999999999999999888888899999999999999999999999999999999998888899999999999887
Q ss_pred hcC--CC--CCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEEC
Q 022062 260 LTV--PR--GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 260 ~~~--~~--~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
+.. .. ..++++||.+..+++++.+++ ....++.|.+..+
T Consensus 235 l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~ 277 (479)
T PRK14093 235 LAASARAAGIARIVSFGADEKADARLLDVA--LHADCSAVHADIL 277 (479)
T ss_pred HHHHhhhccCCcEEEEeCCCCccEEEEEEE--EcCCceEEEEEEC
Confidence 651 10 126899998766789998888 7777777777643
No 2
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.4e-53 Score=410.58 Aligned_cols=264 Identities=34% Similarity=0.540 Sum_probs=243.9
Q ss_pred ccCHHHHHHHcCCeecccC--CcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCce-
Q 022062 26 IWTINEIAESVNGKILKWG--PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG- 102 (303)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~--~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~- 102 (303)
+|++.+++..+++.+.... .+++|++|||.+.| |++|+|++|+++|||+|+++|++ +||.+++++++.+.+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dsr~v~~--g~lF~al~G~~~Dgh~fi~~A~~-~GA~a~~v~r~~~~~~~~~ 78 (451)
T COG0770 2 LLTLDELADILGGALVGADPVVVSGVSIDSRKVKP--GDLFVALKGERFDGHDFIEQALA-AGAAAVLVARPVLPPAIPL 78 (451)
T ss_pred cccHHHHHHHhCCccccCcccceeeEEeecccCCC--CceeEEccCccccccchHHHHHh-cCCEEEEEecCcCCccccc
Confidence 3789999999999987655 48999999999999 99999999999999999999999 999999999987655556
Q ss_pred -EEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc
Q 022062 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181 (303)
Q Consensus 103 -~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~ 181 (303)
++.|. |+++||++|+.+|+. ..+.++|+||||+|||||++|++++| +..+++..|.||+||++|+|++++++
T Consensus 79 ~~~~V~-----d~~~al~~la~~~~~-~~~~kvIaITGS~GKTTTKe~la~iL-~~~~~v~~t~gn~Nn~iGlPltll~~ 151 (451)
T COG0770 79 VVLLVL-----DTLEALGKLAKAYRQ-KFNAKVIAITGSNGKTTTKEMLAAIL-STKGKVHATPGNFNNEIGLPLTLLRL 151 (451)
T ss_pred ceEEeH-----HHHHHHHHHHHHHHH-hcCCcEEEEeCCCCcHHHHHHHHHHH-hhcCeEecCCCccCccccchhHHHhC
Confidence 89999 999999999998877 77899999999999999999999999 45678999999999999999999999
Q ss_pred cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhc
Q 022062 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (303)
Q Consensus 182 ~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~ 261 (303)
..+++++|+|||+++.++|..+.++++|++||||||+.+|+++|||.|.++++|.+++..++++|++|+|.|++++..+.
T Consensus 152 ~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~ 231 (451)
T COG0770 152 PADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWA 231 (451)
T ss_pred CCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977776
Q ss_pred CC-CCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEECC
Q 022062 262 VP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301 (303)
Q Consensus 262 ~~-~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~~~ 301 (303)
.. ...++++||.+..+|+++.+++ .+..+++|++..++
T Consensus 232 ~~~~~~~v~~fg~~~~~d~~~~~i~--~~~~~~~f~~~~~~ 270 (451)
T COG0770 232 AKIGNAKVLSFGLNNGGDFRATNIH--LDEEGSSFTLDIEG 270 (451)
T ss_pred hhcCCCcEEEEcCCCCCceeeEEEE--EcCCceEEEEEecC
Confidence 22 2368999998766899999999 99999999998765
No 3
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=8.4e-53 Score=411.79 Aligned_cols=261 Identities=30% Similarity=0.426 Sum_probs=228.4
Q ss_pred cCHHHHHHHcCCeeccc-CCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEE
Q 022062 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~-~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~ 105 (303)
|++++|++.++|.+.+. ..+++|++|||.++| |+||||++|.++|||+|+++|++ +||.+||++++.+ ++.|+++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (453)
T PRK10773 4 VTLSQLADILNGELQGADITIDAVTTDTRKVTP--GCLFVALKGERFDAHDFADDAKA-AGAGALLVSRPLD-IDLPQLV 79 (453)
T ss_pred CCHHHHHHHhCCcccCCCeeeeEEEeeCCCCCC--CcEEEEecCCCCCHHHHHHHHHH-CCCeEEEEecCcC-CCCCEEE
Confidence 78999999999876432 248999999999999 99999999999999999999999 9999999997543 3678999
Q ss_pred EcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCC
Q 022062 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (303)
Q Consensus 106 V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~ 185 (303)
|+ |++++|+.|+.+++. ..+.++||||||||||||++||+++|+..|. +..+.||+|+.+|.|++++++..++
T Consensus 80 v~-----d~~~al~~la~~~~~-~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~-~~~t~gn~n~~~G~~~~~~~~~~~~ 152 (453)
T PRK10773 80 VK-----DTRLAFGQLAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILRQCGN-TLYTAGNLNNDIGVPLTLLRLTPEH 152 (453)
T ss_pred EC-----CHHHHHHHHHHHHHh-cCCCCEEEEcCCCchHHHHHHHHHHHHhcCc-ccccCccccCCcccccHHhcCCCCC
Confidence 99 999999999995544 3457899999999999999999999977664 5689999999999999988888889
Q ss_pred CEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhc-CCC
Q 022062 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPR 264 (303)
Q Consensus 186 ~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~-~~~ 264 (303)
+++|||+|+++.++++++...++|+++|||||++||+|+|+|+|+|+++|.+||+.++++|.+|+|.|||+...+. ...
T Consensus 153 ~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~ 232 (453)
T PRK10773 153 DYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIG 232 (453)
T ss_pred cEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhc
Confidence 9999999998889988888889999999999999999999999999999999999888889999999999877665 111
Q ss_pred CCeEEEEecCC--CceEEEEEEEEeeCCCeEEEEEEEC
Q 022062 265 GVRKVFFGWRR--GCDVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 265 ~~~vit~g~~~--~ad~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
..++++||... .+|+++.+++ ...+++.|.+..+
T Consensus 233 ~~~~~~~g~~~~~~~d~~~~~i~--~~~~~~~f~~~~~ 268 (453)
T PRK10773 233 SKTVWRFSPNAANSVDFTATNIH--VTSHGTEFTLHTP 268 (453)
T ss_pred CCcEEEEeCCCCCcCcEEEEEEE--EeCCeeEEEEEec
Confidence 13688999753 4789999998 7777888887654
No 4
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2.8e-51 Score=397.16 Aligned_cols=236 Identities=38% Similarity=0.582 Sum_probs=207.3
Q ss_pred eccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccC-CCCCceEEEEcCCCcccHHHHHHHHHH-HhhcC
Q 022062 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGFVQVEGNGNVNTLNSLVNMAC-YARNS 128 (303)
Q Consensus 51 ~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~-~~~~~~~i~V~~~~~~d~~~al~~la~-~~~~p 128 (303)
+|||+++| |+||||++|+++|||+|+++|++ +||+++|++++. ...++|+|+|+ |+++||+.||+ +|++|
T Consensus 1 ~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~~i~~~~~~~~~~~~~i~V~-----d~~~al~~la~~~~~~~ 72 (417)
T TIGR01143 1 TDSRAIKP--GDLFIALKGERFDGHDFVEQALA-AGAVAVLVDREVGPDNGLPQILVD-----DTLEALQALASAKRAKF 72 (417)
T ss_pred CCCCccCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEcccccCCCCCCEEEEC-----CHHHHHHHHHHHHHhhC
Confidence 59999999 99999999999999999999999 999999999742 11257899999 99999999999 66554
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccC
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~ 208 (303)
+.++||||||||||||++||+++|+..|. +.++.||+|+.+|.|.+++..+++++++|||+|+|+.+++.++...++
T Consensus 73 --~~~vI~VTGTnGKTTt~~ll~~iL~~~g~-~~~t~gn~n~~ig~p~~~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~ 149 (417)
T TIGR01143 73 --SGKVIGITGSSGKTTTKEMLAAILSHKYK-VFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAK 149 (417)
T ss_pred --CCCEEEEcCCCchhHHHHHHHHHHhccCc-EecCCCcCCCccchhHHHhcCCCCCeEEEEEeCCCCCCcHHHHhCccC
Confidence 47899999999999999999999977664 778899999999999999888889999999999888888887778899
Q ss_pred ccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC-CCCCeEEEEecCCCceEEEEEEEEe
Q 022062 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQVA 287 (303)
Q Consensus 209 p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~-~~~~~vit~g~~~~ad~~~~~i~~~ 287 (303)
|+++|||||++||+|+|+|+|+|+++|.+||+.+++++.+|+|.|||+...+.. ....++++||.++ +|+++.+++
T Consensus 150 p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~i~-- 226 (417)
T TIGR01143 150 PDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEG-GDFSAADIS-- 226 (417)
T ss_pred CCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCC-CcEEEEEEE--
Confidence 999999999999999999999999999999998888899999999998877652 1124689999765 788888888
Q ss_pred eCCCe-EEEEEEEC
Q 022062 288 NGGLG-VQVVLEKE 300 (303)
Q Consensus 288 ~~~~g-~~f~l~~~ 300 (303)
....+ +.|.+..+
T Consensus 227 ~~~~~~~~~~~~~~ 240 (417)
T TIGR01143 227 YSALGSTGFTLVAP 240 (417)
T ss_pred EcCCCCEEEEEEeC
Confidence 77666 77877654
No 5
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=8.3e-49 Score=408.14 Aligned_cols=259 Identities=24% Similarity=0.407 Sum_probs=225.1
Q ss_pred cCHHHHHHHcCCeeccc--CCcceEEeccCcc--ccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccC-C---C
Q 022062 27 WTINEIAESVNGKILKW--GPPGIICTDTRIL--APNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-N---N 98 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~--~~i~~i~~dsr~v--~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~-~---~ 98 (303)
|++.+|++.++|.++.+ ..|++|++|||.+ +| |+||||++|+++|||+|+++|++ +||+++|+++.. + .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~i~~DSR~v~~~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~iv~~~~~~~~~~~ 79 (822)
T PRK11930 3 YTLESISGILGAEGLGDKDAIIDQILTDSRSLSFPE--NTLFFALKGERNDGHRYIQELYE-KGVRNFVVSEEKHPEESY 79 (822)
T ss_pred ccHHHHHHHhCCeeccCCCceeCEEEecCCccCCCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEeccccccccC
Confidence 68999999999887642 2389999999999 99 99999999999999999999999 999999997632 1 1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHH
Q 022062 99 WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178 (303)
Q Consensus 99 ~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l 178 (303)
.++|++.|+ |+++||+.||++|+. +.++++||||||||||||++||+++|+. .+++..+.+++|+.+|.|.++
T Consensus 80 ~~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGT~GKTTT~~ll~~iL~~-~~~~~~~~~~~n~~ig~p~~~ 152 (822)
T PRK11930 80 PDANFLKVK-----DPLKALQELAAYHRS-QFDIPVIGITGSNGKTIVKEWLYQLLSP-DYNIVRSPRSYNSQIGVPLSV 152 (822)
T ss_pred CCCCEEEEC-----CHHHHHHHHHHHHHH-hCCCCEEEEeCCCcHHHHHHHHHHHHhc-cCcEecCCcccCcchhHHHHH
Confidence 257899999 999999999995554 7788999999999999999999999954 456777889999999999999
Q ss_pred hcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhh
Q 022062 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258 (303)
Q Consensus 179 ~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~ 258 (303)
+.++.+++++|||+|+++.++++++...++|+++|||||++||||+|+|+|+|+++|.+||+. .+.+|+|.||++..
T Consensus 153 ~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~ 229 (822)
T PRK11930 153 WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELIS 229 (822)
T ss_pred hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHH
Confidence 888889999999999999999999988899999999999999999999999999999999974 47999999999987
Q ss_pred hhcCC--CCCeEEEEecCC-CceEEEEEEEEeeCCCeEEEEEEEC
Q 022062 259 NLTVP--RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 259 ~~~~~--~~~~vit~g~~~-~ad~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
.+... ...++++||.+. .+++++.+++ ...+++.|.+..+
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~--~~~~~~~~~~~~~ 272 (822)
T PRK11930 230 SCITKSNLTLKLISWSRKDPEAPLYIPFVE--KKEDHTVISYTYK 272 (822)
T ss_pred HHHHhhhcCCcEEEEcCCCCCCcEEEEEEE--EcCCceEEEEEeC
Confidence 75511 124688999764 5789999988 7777777877654
No 6
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1e-47 Score=376.57 Aligned_cols=245 Identities=24% Similarity=0.337 Sum_probs=205.3
Q ss_pred cCHHHHHHHcCCeecccCCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCC-CCCceEEE
Q 022062 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQ 105 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~-~~~~~~i~ 105 (303)
+.|.++++. ..+++|++|||.++| |+||||++|+++|||+|+++|++ +||+++|+++..+ ..++|+|+
T Consensus 4 ~~~~~~~~~--------~~i~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~i~ 72 (460)
T PRK00139 4 MKLRDLLAP--------VEITGLTYDSRKVKP--GDLFVALPGHKVDGRDFIAQAIA-NGAAAVVAEADGEAGTGVPVII 72 (460)
T ss_pred chHHHHhcC--------CceeEEEeeccCcCC--CCEEEEeCCCcCcHHHHHHHHHH-CCCEEEEEcCccccCCCceEEE
Confidence 355666552 347899999999999 99999999999999999999999 9999999997432 12679999
Q ss_pred EcCCCcccHHHHHHHHHH-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccch----------
Q 022062 106 VEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV---------- 174 (303)
Q Consensus 106 V~~~~~~d~~~al~~la~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~---------- 174 (303)
|+ |+++||++||+ ++++|+.++++||||||||||||++||+++|++.|.++ ++.||.|+.++.
T Consensus 73 V~-----d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~gn~~~~i~~~~~~~~~~t~ 146 (460)
T PRK00139 73 VP-----DLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKT-ALIGTLGNGIGGELIPSGLTTP 146 (460)
T ss_pred EC-----CHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCE-EEECCcccccCCeecccCCCCc
Confidence 99 99999999999 66677778899999999999999999999998888665 578887776665
Q ss_pred -hhHHhc-----ccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEE
Q 022062 175 -ALSLIG-----IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248 (303)
Q Consensus 175 -p~~l~~-----~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~ 248 (303)
|++++. .+.+++++|||+| |+.+++.++.. ++|+++|||||++||+|+|||+|+|+++|.+||+... +.+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~VlE~~-s~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~ 222 (460)
T PRK00139 147 DALDLQRLLAELVDAGVTYAAMEVS-SHALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAA 222 (460)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEcc-hhhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeE
Confidence 666653 3778999999998 77777777766 8999999999999999999999999999999998642 489
Q ss_pred EEeCCChhhhhhcCCCCCeEEEEecC-CCceEEEEEEEEeeCCCeEEEEEE
Q 022062 249 VLNADDPLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVANGGLGVQVVLE 298 (303)
Q Consensus 249 Vin~Dd~~~~~~~~~~~~~vit~g~~-~~ad~~~~~i~~~~~~~g~~f~l~ 298 (303)
|+|.||+....+.. ++.+||+. ..+++++.++. ....+..|.+.
T Consensus 223 v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 267 (460)
T PRK00139 223 VINADDEVGRRLLA----LPDAYAVSMAGADLRATDVE--YTDSGQTFTLV 267 (460)
T ss_pred EEEcCcHhHHHHHh----hcEEEEecCCCCcEEEEEEE--EecCceEEEEE
Confidence 99999998877652 25678876 56789888887 66667667653
No 7
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=1.6e-47 Score=375.57 Aligned_cols=243 Identities=25% Similarity=0.330 Sum_probs=201.9
Q ss_pred CcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCC--CCCceEEEEcCCCcccHHHHHHHHH
Q 022062 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NWDKGFVQVEGNGNVNTLNSLVNMA 122 (303)
Q Consensus 45 ~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~--~~~~~~i~V~~~~~~d~~~al~~la 122 (303)
.+++|++|||+++| |+||||++|+++|||+|+++|++ +||+++|++++.+ ..++|+++|+ |+++||++||
T Consensus 3 ~~~~v~~dsr~v~~--g~lFval~G~~~dgh~fi~~A~~-~GA~~~i~~~~~~~~~~~~~~~~v~-----d~~~al~~la 74 (464)
T TIGR01085 3 EVTGLTLDSREVKP--GDLFVAIKGTHVDGHDFIHDAIA-NGAVAVVVERDVDFYVAPVPVIIVP-----DLRHALSSLA 74 (464)
T ss_pred ceeEEEecCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEccccccccCCceEEEEC-----CHHHHHHHHH
Confidence 37889999999999 99999999999999999999999 9999999998543 1257899999 9999999999
Q ss_pred H-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe--EEecCCC---cCccchh------------hHHhcc-cC
Q 022062 123 C-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNW---NNRVGVA------------LSLIGI-DR 183 (303)
Q Consensus 123 ~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~--~~t~g~~---n~~~g~p------------~~l~~~-~~ 183 (303)
+ ++++|+.++++||||||||||||++||+++|+..|+++ .++.|++ |+.+|.| ..++.+ +.
T Consensus 75 ~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~ 154 (464)
T TIGR01085 75 AAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEA 154 (464)
T ss_pred HHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHC
Confidence 8 55556678899999999999999999999999888875 6778877 6666666 223444 67
Q ss_pred CCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCC
Q 022062 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263 (303)
Q Consensus 184 ~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~ 263 (303)
+++++|+|+| ++.+++.++.. ++|+++|||||++||+++|+|+|+|+++|.++|+.++++|.+|+|.|||....+...
T Consensus 155 ~~~~~VlE~g-~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~ 232 (464)
T TIGR01085 155 GAQYAVMEVS-SHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKR 232 (464)
T ss_pred CCCEEEEEec-HHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHh
Confidence 8999999999 88888888877 899999999999999999999999999999999988778899999999998776521
Q ss_pred CCCeEEEEec-CC-----CceEEEEEEEEeeCCCeEEEEEEEC
Q 022062 264 RGVRKVFFGW-RR-----GCDVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 264 ~~~~vit~g~-~~-----~ad~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
. ...++|+. .. .+++++.+++ ....++.|.+..+
T Consensus 233 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 272 (464)
T TIGR01085 233 L-PKDITVSAITQPADGRAQDIKITDSG--YSFEGQQFTFETP 272 (464)
T ss_pred c-CCCeEEEEecCCCccccccEEEEEEE--EecCceEEEEEeC
Confidence 1 12234443 21 4578777777 6666777777654
No 8
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.6e-46 Score=396.80 Aligned_cols=243 Identities=34% Similarity=0.485 Sum_probs=207.7
Q ss_pred cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHHHh
Q 022062 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA 125 (303)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~ 125 (303)
+++|++|||.++| |+||||++|+++|||+|+++|++ +||+++|++++....++|+++|+ |++++|++|+.+|
T Consensus 526 i~~i~~dSr~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~i~~~~~~~~~~~~i~V~-----d~~~al~~la~~~ 597 (958)
T PRK11929 526 AGAVSTDSRSVGR--GELFVALRGENFDGHDYLPQAFA-AGACAAVVERQVADVDLPQIVVD-----DTRAALGRLATAW 597 (958)
T ss_pred cCeEEeeCCccCC--CCEEEEecCCCCCHHHHHHHHHH-cCCEEEEECCCccCCCCCEEEeC-----CHHHHHHHHHHHH
Confidence 8999999999999 99999999999999999999999 99999999975422367899999 9999999999955
Q ss_pred hcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCC--CCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHh
Q 022062 126 RNSRFSGVLVGVTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (303)
Q Consensus 126 ~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g--~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l 203 (303)
+. ..+.++||||||||||||++||+++|+..+ ..+..+.||+|+.+|.|++++.++.+.+++|||+|+++.+++.++
T Consensus 598 ~~-~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~~~~~~~~VlE~s~~~~g~~~~~ 676 (958)
T PRK11929 598 RA-RFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYL 676 (958)
T ss_pred Hh-cCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcCCCCCcEEEEEeCCCCCccHHHH
Confidence 44 346789999999999999999999997764 346789999999999999998888889999999998888899998
Q ss_pred hcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC-CCCCeEEEEecCCCceEEEE
Q 022062 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLV 282 (303)
Q Consensus 204 ~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~-~~~~~vit~g~~~~ad~~~~ 282 (303)
..+++|+++|||||++||||+|+|+|+|+++|.++|+.+++++.+|+|.||++...+.. ....++++||.+..+++.+.
T Consensus 677 ~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~~~~ 756 (958)
T PRK11929 677 AAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAE 756 (958)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcceEee
Confidence 87789999999999999999999999999999999998888899999999999877651 11246889998655666664
Q ss_pred EEEEee-----CCCeEEEEEEE
Q 022062 283 AAQVAN-----GGLGVQVVLEK 299 (303)
Q Consensus 283 ~i~~~~-----~~~g~~f~l~~ 299 (303)
.+. . ...++.|.+..
T Consensus 757 ~~~--~~~~~~~~~~~~~~~~~ 776 (958)
T PRK11929 757 KIA--KDISVGEAGGTRCQVVT 776 (958)
T ss_pred ecc--cceeecCCCceEEEEEE
Confidence 433 2 23455666543
No 9
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.3e-45 Score=389.90 Aligned_cols=243 Identities=25% Similarity=0.321 Sum_probs=206.2
Q ss_pred CcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC----CCceEEEEcCCCcccHHHHHHH
Q 022062 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN----WDKGFVQVEGNGNVNTLNSLVN 120 (303)
Q Consensus 45 ~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~----~~~~~i~V~~~~~~d~~~al~~ 120 (303)
.+++|++|||+++| |+||||++|.++|||+|+++|++ +||+++|++++... .++|+|.|+ |++++|+.
T Consensus 28 ~~~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~~~~i~V~-----d~~~al~~ 99 (958)
T PRK11929 28 ATADLRLDSREVQP--GDLFVACRGAASDGRAFIDQALA-RGAAAVLVEAEGEDQVAAADALVLPVA-----DLRKALGE 99 (958)
T ss_pred ccceeeeeccCCCC--CCEEEEeCCCCCCHHHHHHHHHH-cCCEEEEEeccccccccCCCCeEEEEC-----CHHHHHHH
Confidence 48999999999999 99999999999999999999999 99999999974311 257999999 99999999
Q ss_pred HHH-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCc-----cchhhHH----------hcc-cC
Q 022062 121 MAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR-----VGVALSL----------IGI-DR 183 (303)
Q Consensus 121 la~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~-----~g~p~~l----------~~~-~~ 183 (303)
||+ +|++|+.++++||||||||||||++||+++|+..|+++ ++.|++|+. ++.|++. ..+ +.
T Consensus 100 la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~ 178 (958)
T PRK11929 100 LAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPC-GSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAA 178 (958)
T ss_pred HHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCE-EEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHC
Confidence 999 88998888999999999999999999999998888877 567776653 4544432 233 67
Q ss_pred CCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC-
Q 022062 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV- 262 (303)
Q Consensus 184 ~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~- 262 (303)
+++++|||+| |+.+++.|+.. ++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|||+...+..
T Consensus 179 ~~~~~VlE~s-s~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~ 256 (958)
T PRK11929 179 GADAVAMEAS-SHGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAA 256 (958)
T ss_pred CCCEEEEEec-cchHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHH
Confidence 8999999998 88888888877 79999999999999999999999999999999998888899999999999877752
Q ss_pred -CCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEEC
Q 022062 263 -PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 263 -~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
.....+.+|+....+|+++.++. ....+..|.+..+
T Consensus 257 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~ 293 (958)
T PRK11929 257 LPRGLKVGYSPQNAGADVQARDLR--ATAHGQVFTLATP 293 (958)
T ss_pred cCCCceEEEEeeCCCccEEEEEEE--EcCCceEEEEEeC
Confidence 11135667775556789888887 7666777777643
No 10
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=4e-44 Score=353.02 Aligned_cols=221 Identities=19% Similarity=0.202 Sum_probs=176.9
Q ss_pred CcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHH-
Q 022062 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC- 123 (303)
Q Consensus 45 ~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~- 123 (303)
.+++|++|||.++| |+||||+ |.++ ||+|+++|++ +||+++|+++..+. ++|+|+|+ |+++||+.||+
T Consensus 33 ~i~~i~~DSR~v~~--g~lFva~-~~~~-gh~fi~~A~~-~GA~~~v~~~~~~~-~~~~i~V~-----d~~~al~~la~~ 101 (481)
T PRK14022 33 QFDDISYDSRTADE--GTLFFAK-GAYF-KHKFLQNAIT-QGLKLYVSEKDYEV-GIPQVIVP-----DIKKAMSLIAME 101 (481)
T ss_pred cEEEEEecCcCCCC--CCEEEEc-CCCc-hHHHHHHHHH-CCCeEEEEecccCC-CCcEEEEC-----CHHHHHHHHHHH
Confidence 38999999999999 9999999 6666 9999999999 99999999874321 57899999 99999999998
Q ss_pred HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCc---------cchh--hHHhc-----ccCCCCE
Q 022062 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR---------VGVA--LSLIG-----IDRAVDI 187 (303)
Q Consensus 124 ~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~---------~g~p--~~l~~-----~~~~~~~ 187 (303)
+|++|+.++++||||||||||||++||+++|+..|.. .+..|+.++. .+.| +++++ .+.+.++
T Consensus 102 ~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~-~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~~~~e~g~~~ 180 (481)
T PRK14022 102 FYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKP-AMLSTMNTTLDGETFFKSALTTPESLDLFKMMAEAVDNGMTH 180 (481)
T ss_pred HhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCC-EEEEeeeeeccCCeeeeCCCCCchHHHHHHHHHHHHHCCCCE
Confidence 7777889999999999999999999999999877654 3444443333 3367 55543 3568999
Q ss_pred EEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhc--cCCHHHHHHHHHHHhhcCCCCCEEEEeCC-ChhhhhhcCCC
Q 022062 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES--LGSLEDVARAKGEIFQESKLGDVCVLNAD-DPLVANLTVPR 264 (303)
Q Consensus 188 ~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~--~gt~e~~~~aK~~l~~~~~~~g~~Vin~D-d~~~~~~~~~~ 264 (303)
+|||+| |+.....|+. .++|+++|||||++||+|+ |+|+|+|+++|.+||+ +.+.+|+|.| |++...+....
T Consensus 181 ~v~Evs-S~~~~~~r~~-~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~ 255 (481)
T PRK14022 181 LIMEVS-SQAYLVGRVY-GLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVT 255 (481)
T ss_pred EEEEec-hhHHHhcccc-CccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhc
Confidence 999998 6654445554 4799999999999999999 9999999999999995 4689999999 65533222111
Q ss_pred CCeEEEEecCCCceEEEE
Q 022062 265 GVRKVFFGWRRGCDVRLV 282 (303)
Q Consensus 265 ~~~vit~g~~~~ad~~~~ 282 (303)
..++++||.+..+++++.
T Consensus 256 ~~~~~~~g~~~~~~~~~~ 273 (481)
T PRK14022 256 PQEHDFYGIDSENQIMAS 273 (481)
T ss_pred CCCEEEEecCCccceEEE
Confidence 146889997655566544
No 11
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.8e-37 Score=301.24 Aligned_cols=243 Identities=23% Similarity=0.258 Sum_probs=198.1
Q ss_pred ceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCC-C-CCceEEEEcCCCcccHHHHHHHHHH-
Q 022062 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-N-WDKGFVQVEGNGNVNTLNSLVNMAC- 123 (303)
Q Consensus 47 ~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~-~-~~~~~i~V~~~~~~d~~~al~~la~- 123 (303)
++++.|||.+++ |+||+|++|.++||++|+.+|++ +|+.+++++.... . ..+|+|.|+ +++.++..++.
T Consensus 11 ~~l~~dsr~v~~--g~lf~a~~g~~~~g~~~~~~a~~-~Gavav~~~~~~~~~~~~~~vi~V~-----~~~~~~~~~a~~ 82 (475)
T COG0769 11 TGLTLDSRKVKE--GDLFVAKPGTKVDGHDFIAGAIA-PGAVAVVVEKDIKLAEAGVPVIVVT-----GTNGKLTTLALA 82 (475)
T ss_pred ccceeehhhcCC--CcEEEEEeccccccccchHhHhh-CCCEEEEecccccccccCCCEEEEc-----CcHHHHHHHHHH
Confidence 789999999999 99999999999999999999999 9999999996542 1 257789999 99999999998
Q ss_pred HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe--EEecCCCcC---------ccchhhHHh-----cccCCCCE
Q 022062 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNWNN---------RVGVALSLI-----GIDRAVDI 187 (303)
Q Consensus 124 ~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~--~~t~g~~n~---------~~g~p~~l~-----~~~~~~~~ 187 (303)
+|..|+.++++|+||||||||||+++++++++..|.++ .+|.|...+ ..+.++.++ ++++++++
T Consensus 83 ~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 83 FYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred hccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 99999988999999999999999999999998788775 566664321 122334443 25899999
Q ss_pred EEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhh---cCCC
Q 022062 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL---TVPR 264 (303)
Q Consensus 188 ~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~---~~~~ 264 (303)
++||+| ||.+.+.|+.. +.+++++|||+++||||||+++|+|+.+|..+|..+++.+.+|+|.||++...+ ....
T Consensus 163 ~vmEvs-sh~l~~~Rv~~-~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~ 240 (475)
T COG0769 163 AVMEVS-SHGLVQGRVEG-VTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNA 240 (475)
T ss_pred EEEEee-hhHHHhCCccC-ceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhc
Confidence 999998 88887777764 899999999999999999999999999999999866788899999999998433 3222
Q ss_pred CCeEEEEecCCCceEEEE-EEEEeeCCCeEEEEEEECC
Q 022062 265 GVRKVFFGWRRGCDVRLV-AAQVANGGLGVQVVLEKER 301 (303)
Q Consensus 265 ~~~vit~g~~~~ad~~~~-~i~~~~~~~g~~f~l~~~~ 301 (303)
...+++||.+.+...... .++ ....|+.+.+..++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~--~~~~g~~~~~~~~~ 276 (475)
T COG0769 241 LGDYITYGCDFKRPDLDYRGIE--ESSSGSDFVFEPSG 276 (475)
T ss_pred CCCEEEeCCCCchhhhhhccce--eeeccceeEEEccC
Confidence 247999998865433322 366 56666666665543
No 12
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.97 E-value=9.6e-31 Score=226.68 Aligned_cols=158 Identities=37% Similarity=0.580 Sum_probs=132.9
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhccc-CCCCEEEEEecCCChhhHHHhhcccCccEEEEc
Q 022062 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215 (303)
Q Consensus 137 VTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~-~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViT 215 (303)
||||||||||++||+++|++.|. ..++.|+.++.++.+..+..+. .+.+++|+|+|+++.++ .++...++|+++|||
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viT 78 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGK-VVGTIGNTNNQIGLPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVIT 78 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTE-EEEEESSCHHHHHHHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCC-cccccccccchHHHHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeec
Confidence 89999999999999999988876 4467888888888887776654 58999999999887766 666665899999999
Q ss_pred CCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCCCeEEE
Q 022062 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (303)
Q Consensus 216 Ni~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f 295 (303)
||++||+|+|+++|+|+++|+++++.+++++.+|+|.|||.+.........++++||.++..++++..+. ...++..|
T Consensus 79 ni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~--~~~~~~~~ 156 (188)
T PF08245_consen 79 NIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNIS--YSEEGGRF 156 (188)
T ss_dssp ---SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEE--EETTEEEE
T ss_pred eecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEE--EecCCcEE
Confidence 9999999999999999999999999998899999999999777665222267999999998899999999 88888888
Q ss_pred EEE
Q 022062 296 VLE 298 (303)
Q Consensus 296 ~l~ 298 (303)
.+.
T Consensus 157 ~i~ 159 (188)
T PF08245_consen 157 RII 159 (188)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 13
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=9.2e-28 Score=230.01 Aligned_cols=246 Identities=20% Similarity=0.182 Sum_probs=172.0
Q ss_pred cccCCCCCCcc-CHHHHHHHcCCeecccCCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEccc
Q 022062 17 TFRCPSNSPIW-TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV 95 (303)
Q Consensus 17 ~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~ 95 (303)
.++.+..+--| .+.+++...|.+.-+++.-... -++.++..+..+|+ ||+- +-+ .++..||++..
T Consensus 10 iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~--~t~~L~~~G~~i~~--------gh~~--~ni--~~~~~VV~s~A 75 (459)
T COG0773 10 IHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESP--MTQRLEALGIEIFI--------GHDA--ENI--LDADVVVVSNA 75 (459)
T ss_pred EEEEeeccccHHHHHHHHHhCCCceECccccccH--HHHHHHHCCCeEeC--------CCCH--HHc--CCCceEEEecc
Confidence 44544444444 4888888888776553211111 22222221123332 1221 112 23444555544
Q ss_pred CCC----------CCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEec
Q 022062 96 CNN----------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165 (303)
Q Consensus 96 ~~~----------~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~ 165 (303)
++. .++|++.-+ ++|++|.+. ...|||+||+|||||+.||+++|++.|..+..-+
T Consensus 76 i~~~NpEi~~A~e~~ipi~~r~--------e~Laelm~~-------~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~i 140 (459)
T COG0773 76 IKEDNPEIVAALERGIPVISRA--------EMLAELMRF-------RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLI 140 (459)
T ss_pred cCCCCHHHHHHHHcCCCeEcHH--------HHHHHHHhC-------CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEE
Confidence 332 158888444 666666542 4689999999999999999999999988875556
Q ss_pred CCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCC
Q 022062 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245 (303)
Q Consensus 166 g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~ 245 (303)
|..-+..|.... ....+|+|.|+++|+. ..+ . ++|+++|+|||..||+|+|++++++.+++..++..++..
T Consensus 141 GG~~~~~g~na~----~g~~~~fV~EADEsD~---sFl-~-~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~ 211 (459)
T COG0773 141 GGILKNFGTNAR----LGSGDYFVAEADESDS---SFL-H-YNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFY 211 (459)
T ss_pred CcccccCCcccc----cCCCceEEEEeccccc---ccc-c-CCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCcc
Confidence 643222332111 1234899999998874 222 2 799999999999999999999999999999999999999
Q ss_pred CEEEEeCCChhhhhhcCC-CCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEECCC
Q 022062 246 DVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (303)
Q Consensus 246 g~~Vin~Dd~~~~~~~~~-~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~~~~ 302 (303)
|.+|+|.|||.++++... ...++++||+++.+||++.+++ ....+++|++..+++
T Consensus 212 G~~v~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~--~~~~~~~F~V~~~g~ 267 (459)
T COG0773 212 GRAVVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIR--QDGSGTTFDVLFRGE 267 (459)
T ss_pred ceEEEECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeE--EeccccEEEEEEcCc
Confidence 999999999999997621 2267999999966999999999 999999999988765
No 14
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.95 E-value=3.9e-27 Score=231.13 Aligned_cols=187 Identities=23% Similarity=0.273 Sum_probs=137.1
Q ss_pred CceEEEEcccCCCC----------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 86 GA~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
++..||.++.++.. ++|++.-. +.+. ++... .++||||||||||||+.||+++|+
T Consensus 66 ~~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~--------e~~~---~~~~~----~~~I~ITGTnGKTTTt~ll~~iL~ 130 (461)
T PRK00421 66 DADVVVYSSAIPDDNPELVAARELGIPVVRRA--------EMLA---ELMRF----RTSIAVAGTHGKTTTTSLLAHVLA 130 (461)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCcEEeHH--------HHHH---HHHcc----CcEEEEECCCCHHHHHHHHHHHHH
Confidence 67788888766531 56766322 2222 22222 379999999999999999999999
Q ss_pred hCCCC-eEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHH
Q 022062 156 SLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234 (303)
Q Consensus 156 ~~g~~-~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~a 234 (303)
..|++ +...-|+.++ .+.+.. ..+.+++|+|+|+++. . . ..++|+++|||||++||+|+|+|+|+|+++
T Consensus 131 ~~g~~~~~~~gg~~~~-~~~~~~----~~~~~~~V~E~ss~q~-~---~-~~~~p~vaViTNI~~DHld~~gt~e~y~~a 200 (461)
T PRK00421 131 EAGLDPTFLIGGILNA-AGTNAR----LGNSDYFVAEADESDR-S---F-LKLHPDIAIVTNIDADHLDYYGDFEDLKDA 200 (461)
T ss_pred hcCCCCeEEECceecc-CCcccc----cCCCCEEEEECCCccc-h---H-hhcCCCEEEEccCChhhccccCCHHHHHHH
Confidence 98864 3333444333 243322 2367999999995532 2 1 247999999999999999999999999999
Q ss_pred HHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEE
Q 022062 235 KGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299 (303)
Q Consensus 235 K~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~ 299 (303)
|.+++..+++++.+|+|.||+....+.....+++++||.++.+++.+.++. ...+++.|.+..
T Consensus 201 k~k~~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~ 263 (461)
T PRK00421 201 FQEFAHNLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAENIR--QDGGGTHFDVLR 263 (461)
T ss_pred HHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEE--EcCCceEEEEEE
Confidence 999999888889999999999888776222257899998766788877776 555566676543
No 15
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.95 E-value=1.3e-26 Score=228.25 Aligned_cols=167 Identities=24% Similarity=0.286 Sum_probs=122.8
Q ss_pred CceEEEEcccCCCC----------CceEEEEcCCCcccHHHHHHHH-HHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNM-ACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 86 GA~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~l-a~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
++..||.++.++.. ++|++ . +...++... +.+|+.| .++||||||||||||++||+++|
T Consensus 74 ~~d~vV~Spgi~~~~p~~~~a~~~gi~v~--~-----~~el~~~~~~~~~~~~~---~~vIaVTGTnGKTTTt~ml~~iL 143 (473)
T PRK00141 74 SFSLVVTSPGWRPDSPLLVDAQSQGLEVI--G-----DVELAWRLDQAGVFGEP---RTWLAVTGTNGKTTTTAMLAAMM 143 (473)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHCCCcee--e-----HHHHHHHhhhhhccCCC---CCEEEEeCCCcHHHHHHHHHHHH
Confidence 56677777765431 45554 2 433332222 2244443 26999999999999999999999
Q ss_pred HhCCCCeEEecCCCcCccchhhH-HhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHH
Q 022062 155 ESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVAR 233 (303)
Q Consensus 155 ~~~g~~~~~t~g~~n~~~g~p~~-l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~ 233 (303)
+..|.++. +.|| +|.|+. .+....+.+++|+|+|+++. .+...++||++|||||++||||+|+|+|+|++
T Consensus 144 ~~~g~~~~-~~Gn----ig~p~~~~l~~~~~~~~~V~E~ss~~l----~~~~~~~pdiaViTNi~~dHLd~~~s~e~y~~ 214 (473)
T PRK00141 144 QEGGFAAQ-AVGN----IGVPVSAALVAQPRIDVLVAELSSFQL----HWSPTLTPDVGVVLNLAEDHIDWHGSMRDYAA 214 (473)
T ss_pred HhcCCcEE-Eecc----CChhHHHHHhcCCCCCEEEEecCCccc----ccCcccCCCEEEEcCCChhhccccCCHHHHHH
Confidence 88887763 6676 566765 33344578999999995443 23356899999999999999999999999999
Q ss_pred HHHHHhhcCCCCCEEEEeCCChhhhhhcCC-CCCeEEEEecCC
Q 022062 234 AKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRR 275 (303)
Q Consensus 234 aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~-~~~~vit~g~~~ 275 (303)
+|.+||+. +.+|+|.||++...+... ...++++||...
T Consensus 215 aK~~l~~~----~~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
T PRK00141 215 DKAKVLRG----PVAVIGADDEYVVQLTSAADLSGLIGFTMGE 253 (473)
T ss_pred HHHHHhhC----CEEEEECCCHHHHHHHhhcCCCcEEEEeCCC
Confidence 99999963 689999999998877521 124689999754
No 16
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.3e-26 Score=223.74 Aligned_cols=135 Identities=33% Similarity=0.521 Sum_probs=107.9
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhh-HHhcccCCCCEEEEEecCCChhhHHHhhcccCc
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL-SLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~-~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p 209 (303)
..|+||||||||||||+.||+++|++.|.++. --|| +|.|. .+.......++.|+|+|+.+ ++... -++|
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~-lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQ---L~~~~-~~~P 179 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL-LGGN----IGTPALELLEQAEPADVYVLELSSFQ---LETTS-SLRP 179 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCce-eccc----cCccHHHhhcccCCCCEEEEEccccc---cccCc-cCCc
Confidence 35699999999999999999999999999773 3455 56664 34344457899999998433 23333 4799
Q ss_pred cEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCC-CCCeEEEEecCCC
Q 022062 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRG 276 (303)
Q Consensus 210 ~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~-~~~~vit~g~~~~ 276 (303)
++++||||++||||||+|||+|+.+|.+++.++.+ ++|+|.||+++..+... ....+++|+..+.
T Consensus 180 ~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~~~~~~~~fs~~~~ 245 (448)
T COG0771 180 EIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEATKARVIWFSFGEP 245 (448)
T ss_pred cEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeCCcHHHhhhhhhcccceeEEEEcccc
Confidence 99999999999999999999999999999998755 99999999999987722 2246777776653
No 17
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=99.94 E-value=3.4e-26 Score=223.75 Aligned_cols=143 Identities=21% Similarity=0.231 Sum_probs=113.9
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCeE----EecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcc--
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF----QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM-- 206 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~----~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~-- 206 (303)
++||||||||||||++||+++|+..|.++. ++.|| +|.|..+ .+.+++|+|+|+++.+++.++..+
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn----~G~~~~~----~~~~~~V~E~~s~~~~~~~~l~~~~~ 174 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN----FGVSARL----GESPFFVIEADEYDTAFFDKRSKFVH 174 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc----Ccccccc----CCCCEEEEEccCcCccccccccceee
Confidence 499999999999999999999998887752 34555 3666542 347999999999988877666655
Q ss_pred cCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC-CCCCeEEEEecCCCceEEEEEEE
Q 022062 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQ 285 (303)
Q Consensus 207 ~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~-~~~~~vit~g~~~~ad~~~~~i~ 285 (303)
++|+++|||||++||+|+|+|+|+|+++|.+|++.+++.+.+|+|.||+.+..+.. ....++.+||.. .+++...+.
T Consensus 175 ~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 252 (448)
T TIGR01081 175 YRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQ--GEWQAEKIT 252 (448)
T ss_pred cCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCC--CCEEEEEEe
Confidence 69999999999999999999999999999999998777889999999998876542 111356777643 356555444
No 18
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=9.6e-27 Score=228.27 Aligned_cols=133 Identities=30% Similarity=0.406 Sum_probs=111.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhH--HhcccCCCCEEEEEecCCChhhHHHhhcccCc
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS--LIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~--l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p 209 (303)
.++||||||||||||++||+++|+..+.++. +.|| +|.|+. +... .+.+++|+|+|+++.+.+ . ++|
T Consensus 117 ~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~-~~gn----iG~p~~~~~~~~-~~~~~~VlE~~~~~~~~~----~-~~P 185 (458)
T PRK01710 117 AKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW-VGGN----IGTPLFSNIEEI-KEEDKVVLELSSFQLMTM----D-VSP 185 (458)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCEE-ECCc----cChhHHHHHhhC-CCCCEEEEEcCccccccC----C-CCC
Confidence 5799999999999999999999988887763 5565 688875 3333 367999999998777643 2 699
Q ss_pred cEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCC
Q 022062 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 210 ~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~ 275 (303)
|++|||||++||||+|+|+|+|+++|.++|+.+++++.+|+|.||+.+..+......++++||...
T Consensus 186 diaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~Dd~~~~~~~~~~~~~~~~fg~~~ 251 (458)
T PRK01710 186 EVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNKDNEITNGMEKEAKGDVVKFSRKE 251 (458)
T ss_pred CEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCCcEEEEeCCC
Confidence 999999999999999999999999999999988888999999999998776521114789999753
No 19
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=2.6e-26 Score=223.78 Aligned_cols=181 Identities=27% Similarity=0.340 Sum_probs=137.1
Q ss_pred ccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHHHhhcCCCC
Q 022062 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFS 131 (303)
Q Consensus 52 dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~ 131 (303)
+++.+++ .++||+.+|-..| |.++.+|.+ +|+. ++ . +. +. ++..+ +
T Consensus 59 ~~~~~~~--~d~vv~spgi~~~-~~~~~~a~~-~g~~--------------v~-~------~~-el---~~~~~-----~ 104 (438)
T PRK03806 59 NDEWLLA--ADLIVASPGIALA-HPSLSAAAD-AGIE--------------IV-G------DI-EL---FCREA-----Q 104 (438)
T ss_pred CHHHhcC--CCEEEECCCCCCC-CHHHHHHHH-CCCe--------------EE-E------HH-HH---Hhhhc-----C
Confidence 4566777 8999999999988 999999998 8753 22 1 11 11 22222 2
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~i 211 (303)
.++||||||||||||++||+++|+..|.++. ..|| +|.|.. ..+..+.+++|+|+|+++. + ....++|++
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~-~~gn----ig~p~~-~~~~~~~~~~V~E~ss~~l-~---~~~~~~p~i 174 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVG-VGGN----IGLPAL-SLLDQECELYVLELSSFQL-E---TTSSLKAAA 174 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE-EeCC----cchhHH-HhhccCCCEEEEEccchhh-c---cCcccCCCE
Confidence 4699999999999999999999988887753 4555 566652 2345567999999985543 2 235579999
Q ss_pred EEEcCCChhhhhcc-CCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEE
Q 022062 212 RVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281 (303)
Q Consensus 212 aViTNi~~dHld~~-gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~ 281 (303)
+|||||++||+|+| +|+|+|+++|.++++. .+.+|+|.|||....+... ..++++||.+. .++.+
T Consensus 175 aViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~-~~~~~ 240 (438)
T PRK03806 175 ATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DKRCVSFGVNM-GDYHL 240 (438)
T ss_pred EEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhcC-CceEEEEecCC-CceEE
Confidence 99999999999999 6999999999999974 3789999999988775422 25788998753 35544
No 20
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=99.94 E-value=3.1e-26 Score=222.88 Aligned_cols=164 Identities=29% Similarity=0.387 Sum_probs=124.1
Q ss_pred CceEEEEcccCCC--C--------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 86 GA~~vv~~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
++..||.++.++. | ++|++.-. +.+ +.+. +.++||||||||||||++||+++|+
T Consensus 62 ~~d~vv~sp~i~~~~p~~~~a~~~~i~i~~~~--------e~~---~~~~-----~~~~I~VTGT~GKTTTt~li~~iL~ 125 (433)
T TIGR01087 62 NADLVVKSPGIPPDHPLVQAAAKRGIPVVGDI--------ELF---LRLV-----PLPVVAITGTNGKTTTTSLLYHLLK 125 (433)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCCcEEEHH--------HHH---Hhhc-----CCCEEEEECCCCHHHHHHHHHHHHH
Confidence 6778888887653 1 56665221 222 2222 2579999999999999999999998
Q ss_pred hCCCCeEEecCCCcCccchh-hHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHH
Q 022062 156 SLGVNVFQSYGNWNNRVGVA-LSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234 (303)
Q Consensus 156 ~~g~~~~~t~g~~n~~~g~p-~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~a 234 (303)
..|.++ ...|| +|.| +.+... .+.+++|+|+|+++ ++ ....++|+++|||||++||+|+|+|+|+|+++
T Consensus 126 ~~g~~~-~~~gn----ig~~~~~~~~~-~~~~~~V~E~~~~~---l~-~~~~~~p~iaViTNI~~DHld~~gs~e~~~~~ 195 (433)
T TIGR01087 126 AAGLKA-FLGGN----IGTPALEVLDQ-EGAELYVLELSSFQ---LE-TTESLRPEIALILNISEDHLDWHGSFEDYVAA 195 (433)
T ss_pred hcCCCe-EEECc----cCHHHHHHHhc-cCCCEEEEEcChhH---hc-CCcccCCCEEEEecCChhHhcccCCHHHHHHH
Confidence 888775 34454 5666 343332 57899999998432 23 23457999999999999999999999999999
Q ss_pred HHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCC
Q 022062 235 KGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 235 K~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~ 275 (303)
|.++++.+++++.+|+|.||+.+..+......++++||.+.
T Consensus 196 K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~g~~~ 236 (433)
T TIGR01087 196 KLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFSVEK 236 (433)
T ss_pred HHHHHhcCCCCCEEEEECCCHHHHHhhhhcCceEEEEeCCc
Confidence 99999988888999999999988776522226889999754
No 21
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=1.9e-26 Score=225.82 Aligned_cols=133 Identities=26% Similarity=0.381 Sum_probs=108.1
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~i 211 (303)
.++||||||||||||+.||+++|+..|.++ ...|| +|.|. +....+.+++|+|+|+++. . ....++|++
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~-~~~Gn----iG~p~--l~~~~~~~~~VlE~ss~ql---~-~~~~~~P~i 172 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDY-PVAGN----IGVPA--LQAKASKDGYVLELSSFQL---D-LVKTFTAKI 172 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEEcc----CCHHH--hcccCCCCEEEEEcCchhh---c-cccccCCCE
Confidence 579999999999999999999998888776 34555 56664 2344557999999995543 2 234479999
Q ss_pred EEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC--C--CCCeEEEEecCC
Q 022062 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV--P--RGVRKVFFGWRR 275 (303)
Q Consensus 212 aViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~--~--~~~~vit~g~~~ 275 (303)
+|||||++||||+|+|+|+|+++|.+||+.+++.+.+|+|.||+.+..+.. . ...++++||...
T Consensus 173 avitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~ 240 (454)
T PRK01368 173 AVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTK 240 (454)
T ss_pred EEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHhhcccCceEEEEeCCc
Confidence 999999999999999999999999999998888899999999998877641 1 124789999753
No 22
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=1.5e-26 Score=229.01 Aligned_cols=220 Identities=25% Similarity=0.255 Sum_probs=143.5
Q ss_pred cCHHHHHHHcCCeecccCCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC------C-
Q 022062 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN------W- 99 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~------~- 99 (303)
|.+..++...|..+ ...|++...+....|+-+..|.++....|.++.+. ++..||+++.++. |
T Consensus 20 ~s~a~~L~~~G~~v--------~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~--~~d~vv~sp~I~~~~~~~~~~ 89 (498)
T PRK02006 20 LAMARWCARHGARL--------RVADTREAPPNLAALRAELPDAEFVGGPFDPALLD--GVDLVALSPGLSPLEAALAPL 89 (498)
T ss_pred HHHHHHHHHCCCEE--------EEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhc--CCCEEEECCCCCCcccccCHH
Confidence 45666766666443 23555543331012333322444444445555554 7889999876542 1
Q ss_pred -------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCcc
Q 022062 100 -------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172 (303)
Q Consensus 100 -------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~ 172 (303)
++|++.-. +.+.++.+....|.+..++||||||||||||++||+++|+..|+++. ..||.+...
T Consensus 90 ~~~a~~~~i~v~~~~--------e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gni~~~~ 160 (498)
T PRK02006 90 VAAARERGIPVWGEI--------ELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA-VAGNISPAA 160 (498)
T ss_pred HHHHHHCCCcEEEHH--------HHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE-EECCCCHHH
Confidence 56766322 22333322222333445899999999999999999999998888764 456643211
Q ss_pred chhhHHh-cccCC--CCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEE
Q 022062 173 GVALSLI-GIDRA--VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249 (303)
Q Consensus 173 g~p~~l~-~~~~~--~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~V 249 (303)
. ..+. ++..+ .+++|+|+|+++. .....++|+++|||||++||+|+|+|+|+|+++|.++|+ +++.+|
T Consensus 161 ~--~~~~~~~~~~~~~~~~V~E~ss~~l----~~~~~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~---~~~~~V 231 (498)
T PRK02006 161 L--DKLMEAIDAGALPDVWVLELSSFQL----ETTHTLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG---PRTVRV 231 (498)
T ss_pred H--HHHHHhhccCCCCcEEEEEccHHHh----CcccccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC---CCCEEE
Confidence 0 0111 12233 3899999984322 223457999999999999999999999999999999996 468999
Q ss_pred EeCCChhhhhhcCC-CCCeEEEEecC
Q 022062 250 LNADDPLVANLTVP-RGVRKVFFGWR 274 (303)
Q Consensus 250 in~Dd~~~~~~~~~-~~~~vit~g~~ 274 (303)
+|.|||....+... ...++++||..
T Consensus 232 ln~dd~~~~~~~~~~~~~~~~~~g~~ 257 (498)
T PRK02006 232 LNRDDARVMAMAPPGGAADAVTFGLD 257 (498)
T ss_pred EeCCCHHHHHHhhccCCccEEEEeCC
Confidence 99999998877621 12468999975
No 23
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=99.94 E-value=1.2e-25 Score=219.92 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=115.5
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCe-EEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCcc
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ 210 (303)
.++||||||||||||+.||+++|+..|.+. ...-|+. +.|..- ......+++|+|+|+++. .. ..++|+
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~----~~~~~~-~~~~~~~~~V~E~s~~q~-~~----~~~~p~ 168 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLV----KEAGTN-ARLGSGEYLVAEADESDA-SF----LHLQPN 168 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECccc----ccCCcc-cccCCCCEEEEECCCccc-hH----hhccCC
Confidence 379999999999999999999998888732 2222332 111100 011346999999996544 22 247999
Q ss_pred EEEEcCCChhhhh-ccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecC-CCceEEEEEEEEee
Q 022062 211 IRVVLNVGDSHLE-SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVAN 288 (303)
Q Consensus 211 iaViTNi~~dHld-~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~-~~ad~~~~~i~~~~ 288 (303)
++|||||++||+| +|+|+|+|+++|.++++.+++++.+|+|.||+....+......++++||.. +.+++++.++. .
T Consensus 169 vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~ 246 (448)
T TIGR01082 169 VAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQ--Q 246 (448)
T ss_pred EEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEE--e
Confidence 9999999999999 999999999999999998888899999999999887762212478999976 34677776666 5
Q ss_pred CCCeEEEEEE
Q 022062 289 GGLGVQVVLE 298 (303)
Q Consensus 289 ~~~g~~f~l~ 298 (303)
...+..|.+.
T Consensus 247 ~~~~~~f~~~ 256 (448)
T TIGR01082 247 SGAEGKFSVR 256 (448)
T ss_pred cCCeEEEEEE
Confidence 4445556554
No 24
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=1.2e-25 Score=219.49 Aligned_cols=171 Identities=24% Similarity=0.336 Sum_probs=126.1
Q ss_pred CCceEEEEcccCCC--C--------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 85 KGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 85 ~GA~~vv~~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
.++..||+++.++. | ++|++.-. +.+..+ .+. .+.++||||||||||||++||+++|
T Consensus 66 ~~~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~--------~~~~~~---~~~--~~~~~I~ITGT~GKTTTt~li~~iL 132 (445)
T PRK04308 66 NGFDILALSPGISERQPDIEAFKQNGGRVLGDI--------ELLADI---VNR--RGDKVIAITGSNGKTTVTSLVGYLC 132 (445)
T ss_pred hCCCEEEECCCCCCCCHHHHHHHHcCCcEEEhH--------HHHHHh---hhc--CCCCEEEEECCCcHHHHHHHHHHHH
Confidence 47788888887653 1 46665222 222222 221 2357999999999999999999999
Q ss_pred HhCCCCeEEecCCCcCccchhhHHhcc---cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHH
Q 022062 155 ESLGVNVFQSYGNWNNRVGVALSLIGI---DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231 (303)
Q Consensus 155 ~~~g~~~~~t~g~~n~~~g~p~~l~~~---~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~ 231 (303)
+..|.++ ...|| +|.|+..... ..+.+++|+|+|+++ ++. ...++|+++|||||++||+|+|+|+|+|
T Consensus 133 ~~~g~~~-~~~Gn----iG~~~~~~~~~~~~~~~d~~VlE~~~~~---l~~-~~~~~p~iaviTNI~~DHld~~~t~e~~ 203 (445)
T PRK04308 133 IKCGLDT-VIAGN----IGTPVLEAELQREGKKADVWVLELSSFQ---LEN-TESLRPTAATVLNISEDHLDRYDDLLDY 203 (445)
T ss_pred HHcCCCe-EEeCC----ccHHHHHHHHhhcCCCCcEEEEEeChHH---hCc-CcccCCCEEEEecCChHHhcccCCHHHH
Confidence 8888765 45666 6777543322 346899999998432 233 3458999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEE
Q 022062 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281 (303)
Q Consensus 232 ~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~ 281 (303)
+++|.+|++. .+.+|+|.|||....+... ..++++||.+..+|+++
T Consensus 204 ~~~K~~i~~~---~~~~i~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~ 249 (445)
T PRK04308 204 AHTKAKIFRG---DGVQVLNADDAFCRAMKRA-GREVKWFSLEHEADFWL 249 (445)
T ss_pred HHHHHHHhcC---CCEEEEeCCcHHHHHHhhc-CCcEEEecCCCCCceeE
Confidence 9999999953 6899999999988776522 25789999765556544
No 25
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=7.9e-26 Score=220.62 Aligned_cols=129 Identities=26% Similarity=0.387 Sum_probs=104.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~i 211 (303)
.++||||||||||||++||+++|+..|.++ .+.|| +|.|... .+..+.+++|+|+|+++. .+ ...++|++
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~-~~~gn----iG~~~~~-~~~~~~~~~V~E~ss~~l---~~-~~~~~p~i 177 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKV-AVGGN----IGVPALD-LLEQDAELYVLELSSFQL---ET-TSSLKLKA 177 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCE-EEEcc----cCHHHHh-hhcCCCCEEEEEcChhhh---cc-CcccCCCE
Confidence 479999999999999999999998888775 34555 6777632 334567999999996553 22 34589999
Q ss_pred EEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCC
Q 022062 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 212 aViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~ 275 (303)
+|||||++||||+|+|+|+|+++|.++|+. .+.+|+|.||+....... ..++++||.++
T Consensus 178 avitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~dd~~~~~~~~--~~~~~~~g~~~ 236 (438)
T PRK04663 178 AAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNRDDKQTYPDHA--ELQLVTFGFDQ 236 (438)
T ss_pred EEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeCCCHHHHhhhc--CCcEEEEecCC
Confidence 999999999999999999999999999975 379999999998755432 25789999764
No 26
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=6.6e-26 Score=222.34 Aligned_cols=175 Identities=27% Similarity=0.355 Sum_probs=128.4
Q ss_pred CceEEEEcccCCCCC-ceEEEEcCCCcccHHHH----HHHHHHHhhc---CCCCCcEEEEeCCCCCcHHHHHHHHHHHhC
Q 022062 86 GCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNS----LVNMACYARN---SRFSGVLVGVTGSVGKSTTKSMIALALESL 157 (303)
Q Consensus 86 GA~~vv~~~~~~~~~-~~~i~V~~~~~~d~~~a----l~~la~~~~~---p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~ 157 (303)
++..||.++.++... -+...|. +.+++ +.++..+++. -..+.++||||||||||||++||+++|+..
T Consensus 65 ~~d~vv~sp~i~~~~~~~~~~v~-----~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 65 GFAALVLSPGVPLTHPKPHWVVD-----LARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred CCCEEEECCCCCccCCcccHHHH-----HHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 567788887665210 1122344 55554 4444432221 013468999999999999999999999888
Q ss_pred CCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHH
Q 022062 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237 (303)
Q Consensus 158 g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~ 237 (303)
|.++ ...|| +|.|+..+....+.+++|+|+|+++ + ...+.++|+++|||||++||+|+|||+|+|+++|++
T Consensus 140 g~~~-~~~gn----ig~~~~~~~~~~~~~~~V~E~~~~~---l-d~t~~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ 210 (460)
T PRK01390 140 GRDV-QMGGN----IGTAVLTLEPPPAGRVYVLELSSYQ---I-DLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKER 210 (460)
T ss_pred CCCe-EEcCc----cchhhhhcccCCCCCEEEEEcCccc---c-ccccccCCCEEEEecCChhHhcccCCHHHHHHHHHH
Confidence 8776 34455 6888776655557899999999653 2 234568999999999999999999999999999999
Q ss_pred HhhcCCCCCEEEEeCCChhhhhhcCC---CCCeEEEEecCC
Q 022062 238 IFQESKLGDVCVLNADDPLVANLTVP---RGVRKVFFGWRR 275 (303)
Q Consensus 238 l~~~~~~~g~~Vin~Dd~~~~~~~~~---~~~~vit~g~~~ 275 (303)
+++..++ +.+|+|.||+....+... ...++++||.+.
T Consensus 211 ii~~~~~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 250 (460)
T PRK01390 211 LFAGQGP-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGK 250 (460)
T ss_pred HHhcCCC-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCC
Confidence 9998777 899999999987766511 224788898653
No 27
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=1e-25 Score=218.65 Aligned_cols=144 Identities=21% Similarity=0.286 Sum_probs=114.7
Q ss_pred CcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCC
Q 022062 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140 (303)
Q Consensus 61 g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGT 140 (303)
-++||+.+|.+ ++|.|+++|.+ +|+. +|. |+..++..+. +++ .++||||||
T Consensus 60 ~dlvV~s~gi~-~~~~~l~~A~~-~g~~----------------vv~-----~~~~~~~~~~-~~~-----~~~I~ITGT 110 (418)
T PRK00683 60 VDLVVRSPGIK-KEHPWVQAAIA-SHIP----------------VVT-----DIQLAFQTPE-FTR-----YPSLGITGS 110 (418)
T ss_pred CCEEEECCCCC-CCcHHHHHHHH-CCCc----------------EEE-----HHHHHHhhhh-cCC-----CCEEEEECC
Confidence 69999999998 88999999999 8842 356 7666654442 222 468999999
Q ss_pred CCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChh
Q 022062 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220 (303)
Q Consensus 141 nGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~d 220 (303)
||||||++||+++|+..|. +..+.|| +|.|+ +....+.+++|+|+|+++.++... ...+|++||||||++|
T Consensus 111 ~GKTTTt~ml~~iL~~~g~-~~~~~Gn----iG~p~--l~~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~d 181 (418)
T PRK00683 111 TGKTTTILFLEHLLKRLGI-PAFAMGN----IGIPI--LDGMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDN 181 (418)
T ss_pred CChHHHHHHHHHHHHHcCC-CeEEECC----cCHHH--HHHhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChh
Confidence 9999999999999988776 4567887 78776 333345899999999765543222 2345699999999999
Q ss_pred hhhccCCHHHHHHHHHHHhhcC
Q 022062 221 HLESLGSLEDVARAKGEIFQES 242 (303)
Q Consensus 221 Hld~~gt~e~~~~aK~~l~~~~ 242 (303)
|+|+|+|+|+|+++|.+||..+
T Consensus 182 Hld~~~s~e~y~~aK~~i~~~~ 203 (418)
T PRK00683 182 HLDYHGNLSAYFQAKQNIAKCL 203 (418)
T ss_pred HhccCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999764
No 28
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=9.6e-25 Score=214.68 Aligned_cols=170 Identities=28% Similarity=0.360 Sum_probs=124.7
Q ss_pred CceEEEEcccCCCC----------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 86 GA~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
++..||.++.++.. ++|++. +..-++..+ .+.+....++||||||||||||++||+++|+
T Consensus 69 ~~d~vV~SpgI~~~~p~~~~a~~~~i~i~~-------~~el~~~~~---~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~ 138 (468)
T PRK04690 69 AFDVVVKSPGISPYRPEALAAAARGTPFIG-------GTALWFAEH---AARDGVVPGTVCVTGTKGKSTTTALLAHLLR 138 (468)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHcCCcEEE-------HHHHHHHHH---hhccCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 67788888876531 566662 222222222 2111112479999999999999999999998
Q ss_pred hCCCCeEEecCCCcCccchhhH-HhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHH
Q 022062 156 SLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234 (303)
Q Consensus 156 ~~g~~~~~t~g~~n~~~g~p~~-l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~a 234 (303)
..|.++ ...|| +|.|+. ......+.+++|+|+|+++.+.+.+. .++|+++|||||++||+|+|+|+|+|.++
T Consensus 139 ~~g~~~-~~~Gn----iG~p~~~~~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~iaVItNI~~DHld~~gs~e~y~~a 211 (468)
T PRK04690 139 AAGHRT-ALVGN----IGVPLLEVLAPQPAPEYWAIELSSYQTGDVARS--GARPELAVVLNLFPEHLDWHGGEARYYRD 211 (468)
T ss_pred hcCCcE-EEcCC----CCcchHHHhccCCCCcEEEEEecCCcccccccc--cCCCCEEEEcCCCHHHhcccCCHHHHHHH
Confidence 888655 45666 566663 33334567999999997776555432 37999999999999999999999999999
Q ss_pred HHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecC
Q 022062 235 KGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274 (303)
Q Consensus 235 K~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~ 274 (303)
|.++|....+ +.+|+|.||+....+... ..++++||..
T Consensus 212 K~~i~~~~~~-~~~v~n~dd~~~~~~~~~-~~~v~~~~~~ 249 (468)
T PRK04690 212 KLSLVTEGRP-RIALLNAADPRLAALQLP-DSEVVWFNHP 249 (468)
T ss_pred HHHHHhCCCC-CeEEEeCccHHHHHHhcC-CCeEEEeeCC
Confidence 9999987543 688999999987765421 2578999864
No 29
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=9.1e-25 Score=213.24 Aligned_cols=135 Identities=29% Similarity=0.353 Sum_probs=109.1
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHh-cccCCCCEEEEEecCCChhhHHHhhcccCcc
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~-~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ 210 (303)
.++||||||||||||++||+++|+..|..+ ...|| +|.|.+.. ....+.+++|+|+|+.+. .. ...++|+
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~-~~~Gn----ig~p~~~~~~~~~~~~~~V~E~ss~~~---~~-~~~~~P~ 178 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHA-LLAGN----IGYPASEVAQKATADDTLVMELSSFQL---MG-IETFRPH 178 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCe-EEEcc----cChhhHHHHhcCCCCCEEEEEcCchhh---Cc-ccccCCC
Confidence 579999999999999999999998888665 45666 57776543 334467999999974332 22 3457999
Q ss_pred EEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCC
Q 022062 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 211 iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~ 275 (303)
++|||||++||+|+|+|+|+|+++|.++++..++.+.+|+|.||+....+......++++||.+.
T Consensus 179 iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~ 243 (447)
T PRK02472 179 IAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEVKELAKQTKATVVPFSTTE 243 (447)
T ss_pred EEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCceEEEeecCC
Confidence 99999999999999999999999999999988888999999999988766522225788998753
No 30
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=7.7e-25 Score=216.39 Aligned_cols=152 Identities=24% Similarity=0.247 Sum_probs=114.2
Q ss_pred CceEEEEcccCCCC----------CceEEEEcCCCcccHHHHHHHHHH-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 86 GA~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
++..||.++.++.. ++|++- +..-++..... +|..| .++||||||||||||++||+++|
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~~gi~v~~-------~iel~~~~~~~~~~~~~---~~vIgITGTnGKTTTt~li~~iL 139 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAAAGVPIWG-------DVELAWRLDAAGCYGPP---RRWLVVTGTNGKTTTTSMLHAML 139 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCCcEee-------HHHHhhhhhhhhccCCC---CCEEEEECCCcHHHHHHHHHHHH
Confidence 56778888766531 566652 44333333322 44432 36999999999999999999999
Q ss_pred HhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHH
Q 022062 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234 (303)
Q Consensus 155 ~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~a 234 (303)
+..|.++ .+.|| +|.|+. ..+..+.+++|+|+|+ . ++.++ ..++|+++|||||++||||+|+|+|+|+++
T Consensus 140 ~~~g~~~-~~~Gn----iG~p~~-~~~~~~~~~~VlE~ss-~--ql~~~-~~~~P~vaVITNI~~DHLd~~gt~e~ya~a 209 (488)
T PRK03369 140 IAAGRRS-VLCGN----IGSPVL-DVLDEPAELLAVELSS-F--QLHWA-PSLRPEAGAVLNIAEDHLDWHGTMAAYAAA 209 (488)
T ss_pred HHcCCce-EEeCC----CchHHH-HhccCCCCEEEEECCh-H--HhCcc-cccCCCEEEEcCCCHHHhhhcCCHHHHHHH
Confidence 8888654 45666 677762 1235678999999983 3 33444 458999999999999999999999999999
Q ss_pred HHHHhhcCCCCCEEEEeCCChhhhhhc
Q 022062 235 KGEIFQESKLGDVCVLNADDPLVANLT 261 (303)
Q Consensus 235 K~~l~~~~~~~g~~Vin~Dd~~~~~~~ 261 (303)
|.+||+ .+.+|+|.||+....+.
T Consensus 210 K~~I~~----~~~~Vln~dd~~~~~~~ 232 (488)
T PRK03369 210 KARALT----GRVAVVGLDDSRAAALL 232 (488)
T ss_pred HHHHhc----CCEEEEECCCHHHHHHH
Confidence 999996 37999999999887665
No 31
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.92 E-value=7.3e-25 Score=215.94 Aligned_cols=135 Identities=28% Similarity=0.390 Sum_probs=107.9
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHH-hcccCCCCEEEEEecCCChhhHHHhhccc
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL-IGIDRAVDIAVLEMGMSGKGEILELARMA 207 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l-~~~~~~~~~~V~E~~~s~~~~~~~l~~~~ 207 (303)
..+.++||||||||||||++||+++|+..|.++ .+.|| +|.|+.. .....+.+++|+|+|+++. ..+ +.+
T Consensus 119 ~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~-~~~Gn----ig~~~~~~~~~~~~~~~~V~E~ss~~l---~~~-~~i 189 (480)
T PRK01438 119 DRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA-AAVGN----IGTPVLDAVRDPEGYDVLAVELSSFQL---HWS-PSV 189 (480)
T ss_pred cCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe-EEECC----ccHHHHHHHhcCCCCCEEEEEcChHHh---CcC-ccc
Confidence 445789999999999999999999998888775 45676 6777653 3445678999999984432 222 357
Q ss_pred CccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCC----CCCeEEEEecC
Q 022062 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP----RGVRKVFFGWR 274 (303)
Q Consensus 208 ~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~----~~~~vit~g~~ 274 (303)
+|+++|||||++||+|+|||+|+|+++|.+||+.. .+.+|+|.|||....+... ..+++++||.+
T Consensus 190 ~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~~--~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 258 (480)
T PRK01438 190 SPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEGT--TVACVYNVADPATEDLVEEADVVEGARAIGFTLG 258 (480)
T ss_pred CCCEEEEecCChhhccccCCHHHHHHHHHHHHhCC--CceEEEeCCcHHHHHHHhhhcccCCceEEEEeCC
Confidence 89999999999999999999999999999999853 4789999999988776521 12578899864
No 32
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.92 E-value=1.9e-24 Score=211.10 Aligned_cols=135 Identities=27% Similarity=0.414 Sum_probs=110.1
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhc-ccCCCCEEEEEecCCChhhHHHhhcccCcc
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEMGMSGKGEILELARMARPE 210 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~-~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ 210 (303)
.++||||||||||||++||+++|+..|..+ ...|| +|.|+.... ...+.+++|+|+|+++... ...++|+
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~-~~~g~----ig~~~~~~~~~~~~~~~~v~E~~~~~~~~----~~~~~P~ 178 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKT-LVAGN----IGYPLIDAVEEYGEDDIIVAEVSSFQLET----IKEFKPK 178 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCe-EEeCc----ccHHHHHHHhcCCCCCEEEEEcChhhhcc----ccccCCC
Confidence 689999999999999999999998777554 45665 677766432 2346799999999654432 2458999
Q ss_pred EEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCC
Q 022062 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 211 iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~ 275 (303)
++|||||++||+++|||+|+|+++|.++|+..++.+.+++|.||+....+.....+++++||.+.
T Consensus 179 i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~d~~~~~~~~~~~~~~~~~~~~~~ 243 (450)
T PRK14106 179 VGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSLAKKAKARVIFFSRKS 243 (450)
T ss_pred EEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHhhcCceEEEEecCc
Confidence 99999999999999999999999999999988888999999999988776622236789999653
No 33
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.92 E-value=1.5e-24 Score=212.41 Aligned_cols=131 Identities=24% Similarity=0.356 Sum_probs=103.5
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-----cCCCCEEEEEecCCChhhHHHhhc
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-----DRAVDIAVLEMGMSGKGEILELAR 205 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-----~~~~~~~V~E~~~s~~~~~~~l~~ 205 (303)
+.++||||||||||||++||+++|+..|.++. ..|| +|.|+..+.. ..+.+++|+|+|+ +.. +.. .
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~-~~gn----iG~~~~~~~~~~~~~~~~~d~~VlE~~s-~~l--~~~-~ 178 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAP-ACGN----IGYAACELALLRSGKAQKPDWIVAELSS-YQI--ESS-P 178 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeE-Eecc----cChhHHHHHhhhhccCCCCCEEEEEccc-ccc--ccC-c
Confidence 35799999999999999999999988887653 3444 6777664432 4578999999994 332 332 2
Q ss_pred ccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecC
Q 022062 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274 (303)
Q Consensus 206 ~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~ 274 (303)
.++|+++|||||++||+|+|+|+|+|+++|.+|++. .+.+|+|.||+.+..+.... .+.++|+.+
T Consensus 179 ~~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~dd~~~~~~~~~~-~~~~~~~~~ 243 (459)
T PRK02705 179 ELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNGDDPYLRQHRSSW-PKGYWTSTQ 243 (459)
T ss_pred ccCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEECCCHHHHHHHhcC-CceEEeccC
Confidence 379999999999999999999999999999999964 58999999999887765211 245777754
No 34
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.92 E-value=4.3e-24 Score=222.55 Aligned_cols=149 Identities=21% Similarity=0.352 Sum_probs=112.6
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCe-EEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccE
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~i 211 (303)
++||||||||||||+.||+++|+..|.++ ... |+.+ +.|. .....+.+++|+|+|+++ +.+ ..++|++
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG~~---g~~~--~~~~~~~d~~V~E~ss~~-~~~----~~~~P~i 173 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GGLN---QEGL--NGYSGSSEYFVAEADESD-GSL----KHYTPEF 173 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CCcc---cccc--ccccCCCCEEEEECCCCc-chh----heeecCE
Confidence 69999999999999999999999888753 433 4422 2222 122345799999999764 443 2489999
Q ss_pred EEEcCCChhhhhcc-CCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCC
Q 022062 212 RVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (303)
Q Consensus 212 aViTNi~~dHld~~-gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~ 290 (303)
+|||||++||||+| +|+|+|+++|..++..+++.+.+|+|.||+...... +..+||+...+++++.++. ...
T Consensus 174 aViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~--~~~ 246 (809)
T PRK14573 174 SVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYY--QEG 246 (809)
T ss_pred EEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEE--ecC
Confidence 99999999999988 899999999999998877889999999999765432 2357887655577666665 544
Q ss_pred CeEEEEEEE
Q 022062 291 LGVQVVLEK 299 (303)
Q Consensus 291 ~g~~f~l~~ 299 (303)
.++.|.+..
T Consensus 247 ~~~~f~l~~ 255 (809)
T PRK14573 247 WRSYFSAKF 255 (809)
T ss_pred CeEEEEEEE
Confidence 455666544
No 35
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.92 E-value=2e-24 Score=211.23 Aligned_cols=129 Identities=26% Similarity=0.380 Sum_probs=104.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~i 211 (303)
.++||||||||||||++||+++|+..|.++ ...|| +|.|... .+..+.+++|+|+|+++. .....++|++
T Consensus 108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~-~~ggn----ig~p~~~-~~~~~~~~~V~E~ss~~l----~~~~~~~P~i 177 (448)
T PRK03803 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRV-AVGGN----IGTPALD-LLSDDPELYVLELSSFQL----ETTHSLNAEV 177 (448)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEecC----cCHHHHH-HhcCCCCEEEEEcChhhh----CcCcccCccE
Confidence 479999999999999999999998888765 34555 6667532 223457999999985543 2345589999
Q ss_pred EEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecC
Q 022062 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274 (303)
Q Consensus 212 aViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~ 274 (303)
+|||||++||+|+|+|+|+|+++|.++++. .+.+|+|.||+....+... ..++++||.+
T Consensus 178 aVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~ 236 (448)
T PRK03803 178 ATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNRDDALTRPLVPD-NQPCLSFGLN 236 (448)
T ss_pred EEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhhc-CCcEEEEeCC
Confidence 999999999999999999999999999974 4789999999998876522 2578899975
No 36
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.92 E-value=1.1e-24 Score=210.24 Aligned_cols=123 Identities=30% Similarity=0.422 Sum_probs=101.7
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEE
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ia 212 (303)
++||||||||||||++||+++|+..+..+ .|| +|.|++. ++.+.+++|+|+| |.. ..+...++|+++
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~---~gn----iG~p~~~--~~~~~~~~V~E~s-s~~---~~~~~~~~p~ia 156 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVS---GGN----IGTPLAE--LDKNAKIWVLETS-SFT---LHYTNKAKPNIY 156 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcE---EEE----ecHhHHh--cCCCCCEEEEECC-hHH---hhCCccCCCcEE
Confidence 48999999999999999999998877433 233 6777765 4566799999996 322 244566799999
Q ss_pred EEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEec
Q 022062 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW 273 (303)
Q Consensus 213 ViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~ 273 (303)
|||||++||+|+|+|+|+|.++|.+||+.+++++.+|+|.||+... .. .++++||.
T Consensus 157 vitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~dd~~~~---~~--~~~~~fg~ 212 (401)
T PRK03815 157 LLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPKKFKNTP---TK--AQKIFYED 212 (401)
T ss_pred EEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEeccccccc---cC--CcEEEEec
Confidence 9999999999999999999999999999998899999999998642 12 57889984
No 37
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=99.91 E-value=3e-24 Score=206.96 Aligned_cols=150 Identities=27% Similarity=0.414 Sum_probs=112.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe--EEecCC--CcCcc---c-----------------
Q 022062 118 LVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGN--WNNRV---G----------------- 173 (303)
Q Consensus 118 l~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~--~~t~g~--~n~~~---g----------------- 173 (303)
+.++.+.+++|+.++++|+||||||||||+.||+++|++.|++| ..|++. ++.++ |
T Consensus 4 ~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~ 83 (397)
T TIGR01499 4 MKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRP 83 (397)
T ss_pred HHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHH
Confidence 44556667788888999999999999999999999999999998 445442 22211 1
Q ss_pred -------hh--hHHh-------cccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CHHHHHHHHH
Q 022062 174 -------VA--LSLI-------GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKG 236 (303)
Q Consensus 174 -------~p--~~l~-------~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~e~~~~aK~ 236 (303)
.| ++++ ..+.++|++|||+|+.+.++ ..++++|+++|||||++||+|+|| |+|+|+++|+
T Consensus 84 ~~~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld---~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka 160 (397)
T TIGR01499 84 ILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLD---ATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKA 160 (397)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcc---cccccCCCeEEEccccHHHHHHhCccHHHHHHHHh
Confidence 01 1111 12689999999999754433 345689999999999999999999 9999999999
Q ss_pred HHhhcCCCCCEEEEeCCChhhhhhc----CCCCCeEEEEec
Q 022062 237 EIFQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGW 273 (303)
Q Consensus 237 ~l~~~~~~~g~~Vin~Dd~~~~~~~----~~~~~~vit~g~ 273 (303)
+||+ +++.+|+|.|||....+. .....++++|+.
T Consensus 161 ~I~k---~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~ 198 (397)
T TIGR01499 161 GIIK---EGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGR 198 (397)
T ss_pred CccC---CCCCEEEcCCChHHHHHHHHHHHHcCCCEEEecc
Confidence 9996 356799999998876543 111246777763
No 38
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.91 E-value=4.8e-24 Score=219.17 Aligned_cols=147 Identities=32% Similarity=0.378 Sum_probs=115.4
Q ss_pred CCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe--EEecCCCcCccc-------hhhH--HhcccCCCCEEEEEecCCC
Q 022062 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNWNNRVG-------VALS--LIGIDRAVDIAVLEMGMSG 196 (303)
Q Consensus 128 p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~--~~t~g~~n~~~g-------~p~~--l~~~~~~~~~~V~E~~~s~ 196 (303)
+..+.++||||||||||||++||+++|+..|+++ .++.|.+++... .|.+ ++..++.++++|+|++ +.
T Consensus 476 ~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s-~~ 554 (727)
T PRK14016 476 DDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNPDVEAAVLETA-RG 554 (727)
T ss_pred CCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHHHHHHhcCCCCCEEEEEcC-CC
Confidence 3456899999999999999999999999888887 456666543222 2333 2334667899999998 33
Q ss_pred hhhHHHhhcccCccEEEEcCCChhhhhcc--CCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecC
Q 022062 197 KGEILELARMARPEIRVVLNVGDSHLESL--GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274 (303)
Q Consensus 197 ~~~~~~l~~~~~p~iaViTNi~~dHld~~--gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~ 274 (303)
+.+.....+.+|+++|||||++|||++| +|+|+|+++|+.+++.++++|.+|+|+|||.+..+......++++|+.+
T Consensus 555 -~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~ 633 (727)
T PRK14016 555 -GILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMD 633 (727)
T ss_pred -chhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCC
Confidence 2333344557999999999999999977 4999999999999998888999999999999888762212578999976
Q ss_pred CC
Q 022062 275 RG 276 (303)
Q Consensus 275 ~~ 276 (303)
++
T Consensus 634 ~~ 635 (727)
T PRK14016 634 PD 635 (727)
T ss_pred CC
Confidence 43
No 39
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.91 E-value=6.5e-24 Score=221.90 Aligned_cols=161 Identities=29% Similarity=0.319 Sum_probs=123.5
Q ss_pred cHHHHHHHHHH-Hh-hcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE--EecCCCcCccc-------hhhHH--h
Q 022062 113 NTLNSLVNMAC-YA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVG-------VALSL--I 179 (303)
Q Consensus 113 d~~~al~~la~-~~-~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~--~t~g~~n~~~g-------~p~~l--~ 179 (303)
..+..+..+.+ +| .+|+.++++|+||||||||||++||+++|+..|+++. .|.|.+++... .|... +
T Consensus 458 ~~r~v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~ 537 (864)
T TIGR02068 458 KPRNVARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRI 537 (864)
T ss_pred CCeeHHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHH
Confidence 35566677776 55 5678889999999999999999999999999998874 34454433221 13322 2
Q ss_pred cccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhc--cCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhh
Q 022062 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES--LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257 (303)
Q Consensus 180 ~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~--~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~ 257 (303)
..+++++++|+|++ ++ +.++....+.+|+++|||||+.|||++ |+|+|+|+++|+.+++.++++|.+|+|+|||..
T Consensus 538 l~~~~vd~aVlE~~-~g-gil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~ 615 (864)
T TIGR02068 538 LMDPTVDAAVLETA-RG-GILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMV 615 (864)
T ss_pred hhCCCCCEEEEEcc-CC-chhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence 34678999999997 32 333333345689999999999999985 579999999999999988889999999999998
Q ss_pred hhhcCCCCCeEEEEecCC
Q 022062 258 ANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 258 ~~~~~~~~~~vit~g~~~ 275 (303)
..+.....+++++||.+.
T Consensus 616 ~~~a~~~~~~vi~f~~~~ 633 (864)
T TIGR02068 616 AAMAEKCKGKIAYFSMDP 633 (864)
T ss_pred HHHHHhCCCCEEEEecCC
Confidence 877622126789999754
No 40
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=99.88 E-value=4e-22 Score=193.45 Aligned_cols=134 Identities=22% Similarity=0.339 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecC----CC------cCc-cc----------
Q 022062 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NW------NNR-VG---------- 173 (303)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g----~~------n~~-~g---------- 173 (303)
...+.+|.+.+++|+.+.++|+||||||||||+.||+++|++.|++++.... .+ |.. +.
T Consensus 32 l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~ 111 (416)
T PRK10846 32 LERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAE 111 (416)
T ss_pred hHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHH
Confidence 3445566666778888889999999999999999999999999999842211 11 111 10
Q ss_pred -------hhhH---------Hh-cccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CHHHHHHHH
Q 022062 174 -------VALS---------LI-GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAK 235 (303)
Q Consensus 174 -------~p~~---------l~-~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~e~~~~aK 235 (303)
.+++ +. ..+++++++|||+|++. .++.. +.++|+++|||||++||+|+|| |+|+|+++|
T Consensus 112 ~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglgg--rld~t-n~i~p~vaviTnI~~DHld~lG~t~e~ia~~K 188 (416)
T PRK10846 112 IEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG--RLDAT-NIVDADVAVVTSIALDHTDWLGPDRESIGREK 188 (416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC--Cchhh-hccCCCEEEECCccHHHHHHhcCCHHHHHHHH
Confidence 0111 11 13678999999998654 34443 4579999999999999999999 899999999
Q ss_pred HHHhhcCCCCCEEEEeCCC
Q 022062 236 GEIFQESKLGDVCVLNADD 254 (303)
Q Consensus 236 ~~l~~~~~~~g~~Vin~Dd 254 (303)
+.+++. ++.+|+|.||
T Consensus 189 a~Iik~---~~~~V~~~~d 204 (416)
T PRK10846 189 AGIFRA---EKPAVVGEPD 204 (416)
T ss_pred HhhhcC---CCeEEECCcc
Confidence 999963 5678998877
No 41
>PLN02913 dihydrofolate synthetase
Probab=99.83 E-value=4.4e-20 Score=183.18 Aligned_cols=154 Identities=25% Similarity=0.307 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEe--cC--CCcCcc-----ch------------
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS--YG--NWNNRV-----GV------------ 174 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t--~g--~~n~~~-----g~------------ 174 (303)
.-+.++.+..++|+.++++|.|||||||+||+.||++||+++|++|+.. +. .+|.++ |.
T Consensus 59 ~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~ 138 (510)
T PLN02913 59 GRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFH 138 (510)
T ss_pred HHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHH
Confidence 3445555666788888899999999999999999999999999998532 11 111110 10
Q ss_pred ---------------hhHHh----------cccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CH
Q 022062 175 ---------------ALSLI----------GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SL 228 (303)
Q Consensus 175 ---------------p~~l~----------~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~ 228 (303)
+++.+ ..+.++|++|||+|+.+.++...+....+|+++|||||+.||++++| |+
T Consensus 139 ~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tl 218 (510)
T PLN02913 139 GIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSL 218 (510)
T ss_pred HHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccH
Confidence 11111 12578999999999998887766654455799999999999999998 99
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEeC-CChhhhhhc----CCCCCeEEEEe
Q 022062 229 EDVARAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFG 272 (303)
Q Consensus 229 e~~~~aK~~l~~~~~~~g~~Vin~-Dd~~~~~~~----~~~~~~vit~g 272 (303)
|+|+++|+.|++ +++.+|++. ..+....++ ....++++.++
T Consensus 219 e~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~ 264 (510)
T PLN02913 219 ESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSAS 264 (510)
T ss_pred HHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEec
Confidence 999999999996 466788875 334333332 11125676664
No 42
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=99.78 E-value=1.9e-18 Score=170.47 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=94.5
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEE--ecC--CCc-------------------------------Cccch
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--SYG--NWN-------------------------------NRVGV 174 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~--t~g--~~n-------------------------------~~~g~ 174 (303)
.++++|+|||||||+||+.|+++||++.|++|+. ++. .++ +.++.
T Consensus 59 ~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~ 138 (530)
T PLN02881 59 SRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPM 138 (530)
T ss_pred hcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCC
Confidence 6789999999999999999999999999999842 221 111 11111
Q ss_pred h-----hHHhcc----cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CHHHHHHHHHHHhhcCCC
Q 022062 175 A-----LSLIGI----DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEIFQESKL 244 (303)
Q Consensus 175 p-----~~l~~~----~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~e~~~~aK~~l~~~~~~ 244 (303)
| +++..+ +.++|++|||+|++...+...+ +.+|+++|||||+.||+++|| |+|+|+.+|+.||+ +
T Consensus 139 pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnv--i~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k---~ 213 (530)
T PLN02881 139 PAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNV--VQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFK---P 213 (530)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhc--cCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHh---c
Confidence 3 233222 7889999999998666554332 238999999999999999999 99999999999995 3
Q ss_pred CCEEEEeCCChhhhhhc
Q 022062 245 GDVCVLNADDPLVANLT 261 (303)
Q Consensus 245 ~g~~Vin~Dd~~~~~~~ 261 (303)
+..+|+....+.....+
T Consensus 214 g~p~vt~~q~~ea~~vl 230 (530)
T PLN02881 214 GVPAFTVPQPDEAMRVL 230 (530)
T ss_pred CCCEEEeCCChHHHHHH
Confidence 45566665666554443
No 43
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=99.71 E-value=1.3e-16 Score=154.05 Aligned_cols=153 Identities=25% Similarity=0.408 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEec----CCCcCccc-----------------
Q 022062 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY----GNWNNRVG----------------- 173 (303)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~----g~~n~~~g----------------- 173 (303)
.+-+.+|++..++|+.+.++|.|+|||||.||+.|+.+||+++|++|+.-. -++|.++-
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 455566777788999899999999999999999999999999999984311 12332210
Q ss_pred ----------hhhH------Hhc----ccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CHHHHH
Q 022062 174 ----------VALS------LIG----IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVA 232 (303)
Q Consensus 174 ----------~p~~------l~~----~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~e~~~ 232 (303)
...+ +.. .+.++|++|||+|..... +. .+++.|+++|||||+.||.+++| |+|+++
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRl--DA-TNVi~p~vsvIT~I~lDH~~~LG~tie~IA 183 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRL--DA-TNVIEPDVSVITSIGLDHTAFLGDTLESIA 183 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccc--cc-hhccCCceEEEcccChhHHHHhCCcHHHHH
Confidence 0111 111 256799999999965543 33 35688999999999999999998 899999
Q ss_pred HHHHHHhhcCCCCCEEEEeC-CChhhhhhc----CCCCCeEEEEec
Q 022062 233 RAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGW 273 (303)
Q Consensus 233 ~aK~~l~~~~~~~g~~Vin~-Dd~~~~~~~----~~~~~~vit~g~ 273 (303)
.+|+.+++. +..+|+.. +.|...... ....+++..++.
T Consensus 184 ~EKAGI~k~---g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~ 226 (427)
T COG0285 184 REKAGIIKA---GKPAVIGEQQPPEALNVIAERAEELGAPLFVLGP 226 (427)
T ss_pred HHhhhhccC---CCcEEECCCCCHHHHHHHHHHHHhcCCCeeeccc
Confidence 999999964 34466655 456554433 112245555543
No 44
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=99.44 E-value=2.9e-15 Score=113.18 Aligned_cols=72 Identities=31% Similarity=0.492 Sum_probs=63.6
Q ss_pred cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccC--CC-------CCceEEEEcCCCcccHHH
Q 022062 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NN-------WDKGFVQVEGNGNVNTLN 116 (303)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~--~~-------~~~~~i~V~~~~~~d~~~ 116 (303)
|++|++|||.+.+ |+||||++|.++|||+|+++|++ +||.++++++.. +. ...++|.|+ |+++
T Consensus 2 i~~i~~dSr~v~~--g~lF~a~~G~~~dG~~fi~~a~~-~Ga~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-----~~~~ 73 (83)
T PF01225_consen 2 IHGISIDSRKVSP--GALFFAIKGERVDGHDFIEDAIA-KGAAAVVVDKDASISPDNPEVPAADVPVIPVE-----DTRQ 73 (83)
T ss_dssp EEEEETTSGGHHH--HHHHHHHTTSEEEEECSCHHHHH-TT-EEEESSSGGTSTTTSHHHHHHHHTTEEEE-----EHHH
T ss_pred EEEEEECcCccCh--hHEEEEcCCccccchhhhhHHHH-CCCeEEEEcCccccccccHhHHhcCCCEEEEC-----CHHH
Confidence 6789999999999 99999999999999999999999 999999999876 11 146788999 9999
Q ss_pred HHHHHHH-Hh
Q 022062 117 SLVNMAC-YA 125 (303)
Q Consensus 117 al~~la~-~~ 125 (303)
+|+.|++ ||
T Consensus 74 ~L~~la~~~y 83 (83)
T PF01225_consen 74 ALGELAAAFY 83 (83)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhhhC
Confidence 9999998 44
No 45
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.30 E-value=9.9e-12 Score=119.60 Aligned_cols=142 Identities=25% Similarity=0.361 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhcC--CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEE-e-cCCC--------cCc-----------
Q 022062 115 LNSLVNMACYARNS--RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ-S-YGNW--------NNR----------- 171 (303)
Q Consensus 115 ~~al~~la~~~~~p--~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~-t-~g~~--------n~~----------- 171 (303)
...+.++.+..+.| ..++.+|.|+||+||.||+.++.+||++.|++++. | +.-. |+.
T Consensus 53 l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f 132 (496)
T KOG2525|consen 53 LPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYF 132 (496)
T ss_pred HHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHH
Confidence 33444444455666 77899999999999999999999999999998732 1 1100 110
Q ss_pred --------------cchh-----hHHhc----ccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-C
Q 022062 172 --------------VGVA-----LSLIG----IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-S 227 (303)
Q Consensus 172 --------------~g~p-----~~l~~----~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t 227 (303)
.+.| +++.. ...++|++|+|+|.... ++...-+-+|-+..||+|+.||+++.| +
T Consensus 133 ~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~--~DaTNvI~kpvvcgITslG~DH~~~LG~t 210 (496)
T KOG2525|consen 133 WEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGE--LDATNVIEKPVVCGITSLGLDHTSFLGNT 210 (496)
T ss_pred HHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEEeccccc--cccccccccceEEEEeecCCchHHHHhhH
Confidence 0011 11111 26899999999996554 443332358999999999999999997 7
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhc
Q 022062 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (303)
Q Consensus 228 ~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~ 261 (303)
+++++.+|+.+|+. +-.++.-...+.....+
T Consensus 211 L~eIA~eKAGIfK~---gvpaft~~q~~e~~nvL 241 (496)
T KOG2525|consen 211 LSEIAWEKAGIFKE---GVPAFTVPQPPEALNVL 241 (496)
T ss_pred HHHHHHHhcccccc---CCceEEcCCcHHHHHHH
Confidence 99999999999954 33455555666665554
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.33 E-value=1.3 Score=41.31 Aligned_cols=120 Identities=24% Similarity=0.328 Sum_probs=69.3
Q ss_pred HhhcCCCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEE---------ecCCCc-C---------cc----------
Q 022062 124 YARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVFQ---------SYGNWN-N---------RV---------- 172 (303)
Q Consensus 124 ~~~~p~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~---------t~g~~n-~---------~~---------- 172 (303)
.|.+ .-+..+|||||+- ||||...-+-.-|...|.+|.- |-|..- + ..
T Consensus 44 l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 44 LYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred Hhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC
Confidence 4433 4457799999995 7999999999999899998621 112110 0 00
Q ss_pred ----chhh---HHhc-c-cCCCCEEEEEecCCChhhHH-HhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcC
Q 022062 173 ----GVAL---SLIG-I-DRAVDIAVLEMGMSGKGEIL-ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242 (303)
Q Consensus 173 ----g~p~---~l~~-~-~~~~~~~V~E~~~s~~~~~~-~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~ 242 (303)
|+.- .+.. + -.+.|+.++|.. ..|+-+ .+.++ .|..+++-+. ..| +++.--|+.+++-
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvIIVETV--GvGQsev~I~~~--aDt~~~v~~p-----g~G--D~~Q~iK~GimEi- 190 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVIIVETV--GVGQSEVDIANM--ADTFLVVMIP-----GAG--DDLQGIKAGIMEI- 190 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCEEEEEec--CCCcchhHHhhh--cceEEEEecC-----CCC--cHHHHHHhhhhhh-
Confidence 1100 0011 1 368999999984 333322 23333 3444444332 223 5566667777764
Q ss_pred CCCCEEEEeCCChhhh
Q 022062 243 KLGDVCVLNADDPLVA 258 (303)
Q Consensus 243 ~~~g~~Vin~Dd~~~~ 258 (303)
....|||..|....
T Consensus 191 --aDi~vINKaD~~~A 204 (323)
T COG1703 191 --ADIIVINKADRKGA 204 (323)
T ss_pred --hheeeEeccChhhH
Confidence 45899998886543
No 47
>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.
Probab=93.02 E-value=0.22 Score=36.18 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=39.9
Q ss_pred cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCC---CCCceEEEEcCCCcccHHHHHHHHH
Q 022062 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMA 122 (303)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~---~~~~~~i~V~~~~~~d~~~al~~la 122 (303)
|+++..= ....+ |+|=|. +..+|++++.. -.|.+||+++... ..+.++|+|+ |++.++.+++
T Consensus 5 I~gva~l-~~A~~--~~isF~------~~~ky~~~l~~-s~A~avlv~~~~~~~~~~~~~~iiv~-----nP~~afa~~~ 69 (72)
T PF04613_consen 5 ISGVAPL-EEAGP--GDISFL------DNPKYLKELKN-SKAGAVLVPEEFAEEVPEGKALIIVD-----NPRLAFAKLL 69 (72)
T ss_dssp EEEEE-T-TT--T--TEEEEE-------SSCGGGGGGG----SEEEEEHHHHTCCCSSSEEEECS------HHHHHHHHH
T ss_pred EeeecCh-hhcCC--CCEEEe------cCHHHHHHHHh-CCCeEEEEcchhcccCCCCccEEEEC-----CHHHHHHHHH
Confidence 4444432 22467 888665 44577877776 7788888887522 2378999999 9999999998
Q ss_pred HH
Q 022062 123 CY 124 (303)
Q Consensus 123 ~~ 124 (303)
++
T Consensus 70 ~~ 71 (72)
T PF04613_consen 70 QL 71 (72)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 48
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.38 E-value=0.94 Score=42.44 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=46.7
Q ss_pred ChhhcHHHhHhcCCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCC---CCCcHHHHH
Q 022062 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS---VGKSTTKSM 149 (303)
Q Consensus 73 dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGT---nGKTTt~~m 149 (303)
+....+..|+. .||.-++.-+.. -. ...+++.++ ...+....++|+|+|. .||||++.-
T Consensus 52 ~~~~~~~~a~~-~Ga~~~l~~P~~---------~~-----~l~~~l~~~---~~~~~~~~~vIav~~~KGGvGkTT~a~n 113 (322)
T TIGR03815 52 PGGALWRAAAA-VGAEHVAVLPEA---------EG-----WLVELLADL---DQSPPARGVVVAVIGGRGGAGASTLAAA 113 (322)
T ss_pred CCHHHHHHHHH-hChhheeeCCCC---------HH-----HHHHHHHhh---ccCCCCCceEEEEEcCCCCCcHHHHHHH
Confidence 34556777888 898766543211 11 233333333 2334456788888865 579999999
Q ss_pred HHHHHHhCCCCeE
Q 022062 150 IALALESLGVNVF 162 (303)
Q Consensus 150 l~~iL~~~g~~~~ 162 (303)
|+..|...|.+|.
T Consensus 114 LA~~la~~g~~Vl 126 (322)
T TIGR03815 114 LALAAARHGLRTL 126 (322)
T ss_pred HHHHHHhcCCCEE
Confidence 9999988888873
No 49
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=91.26 E-value=0.66 Score=43.79 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=64.8
Q ss_pred CccCHHHHHHHcCCeecccCC--cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC---C
Q 022062 25 PIWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---W 99 (303)
Q Consensus 25 ~~~~l~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~---~ 99 (303)
+.++|+||++.++.++..+.. ++++..=.+ ..+ ++|+|. +...|.++... -.|.+|++++.... .
T Consensus 2 ~~~~l~~la~~~~~e~~g~~~~~i~~va~l~~-a~~--~~i~f~------~~~ky~~~l~~-s~Agaviv~~~~~~~~~~ 71 (338)
T COG1044 2 PSYTLAELAQQLGAELRGDGDRVITGVAPLDE-AQP--GDISFL------ANPKYRKELKT-SRAGAVIVSAKDAAFAPA 71 (338)
T ss_pred ccchHHHHHHhhCcEEecCCceeeeecchhhh-cCc--ccceee------cChhhhhhccc-CcccEEEecHHHHhcccC
Confidence 456899999999999876542 666654333 467 888776 66788888877 78888998865432 2
Q ss_pred CceEEEEcCCCcccHHHHHHHHHH-Hh
Q 022062 100 DKGFVQVEGNGNVNTLNSLVNMAC-YA 125 (303)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~-~~ 125 (303)
+.+.++++ |+..+++.+++ |+
T Consensus 72 ~~~~Lv~~-----~P~~~fA~~~~~f~ 93 (338)
T COG1044 72 KKNALVVK-----DPYLAFAKVAQLFY 93 (338)
T ss_pred CceEEEeC-----CchHHHHHHHHHhc
Confidence 56788899 99999999999 55
No 50
>PRK06696 uridine kinase; Validated
Probab=91.19 E-value=0.54 Score=41.66 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHHHH-HhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 115 LNSLVNMAC-YARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 115 ~~al~~la~-~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.+.+.+|+. ..........+|||+|- .||||++..|++.|...|..+
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v 53 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPV 53 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 355667776 33322345679999985 689999999999997777665
No 51
>PRK15453 phosphoribulokinase; Provisional
Probab=91.18 E-value=0.24 Score=45.93 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 130 FSGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 130 ~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
.+.++|+|||+. ||||+++.++++|...+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~ 35 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENIN 35 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 356899999985 7999999999999766554
No 52
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=90.72 E-value=1.5 Score=41.46 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCCcEEEE----eCCCCCcHHHHHHHHHHHhCCCCe-EEecC
Q 022062 130 FSGVLVGV----TGSVGKSTTKSMIALALESLGVNV-FQSYG 166 (303)
Q Consensus 130 ~~~~vIgV----TGTnGKTTt~~ml~~iL~~~g~~~-~~t~g 166 (303)
.+.++|.| .|-.|||+++..|+..|++.|+++ +-+.|
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 45689998 899999999999999999899887 33444
No 53
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=90.66 E-value=1.3 Score=42.10 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=59.0
Q ss_pred ccCHHHHHHHcCCeecccCC--cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC---CC
Q 022062 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---WD 100 (303)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~---~~ 100 (303)
+|+|+||++.+++++.++.+ +.+++.=. ...+ ++|=|. +...|.+.+-. -.|.++|+++.... .+
T Consensus 2 ~~~l~~i~~~~~~~~~~~~~~~i~gva~l~-~a~~--~~LsFl------~~~k~~~~l~~-~~A~a~Iv~~d~~~~~p~~ 71 (343)
T PRK00892 2 SLTLAELAELLGAELVGDGDIEITGVASLE-EAGP--GQISFL------ANPKYRKQLAT-TKAGAVIVSPDDAEFVPAG 71 (343)
T ss_pred CccHHHHHHHhCCEEeCCCCceEEeecccc-cCCC--CeEEEE------cCchhHHHHhc-cCCeEEEechhhhhhccCC
Confidence 57999999999998876433 56654322 2356 787544 33456665545 67888888765432 24
Q ss_pred ceEEEEcCCCcccHHHHHHHHHH-Hhhc
Q 022062 101 KGFVQVEGNGNVNTLNSLVNMAC-YARN 127 (303)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~-~~~~ 127 (303)
..++.++ |++.++..+.+ ++..
T Consensus 72 ~~~i~~~-----~p~~~~~~~~~~~~~~ 94 (343)
T PRK00892 72 NALLVVK-----NPYLAFARLAQLFDPP 94 (343)
T ss_pred ceEEEeC-----CHHHHHHHHHHHhccc
Confidence 5677899 99999999888 5433
No 54
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=90.44 E-value=0.49 Score=45.87 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=35.7
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 113 NTLNSLVNMAC-YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+....+.. ..+.+..+.++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVL 139 (387)
T PHA02519 86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVL 139 (387)
T ss_pred HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 44443333333 233334457899999 888999999999999988999984
No 55
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.30 E-value=0.3 Score=43.99 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
+|+|+|.-||||+..-|+.-|...|+++..
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~ 30 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLV 30 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 589999999999999999999989988743
No 56
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=89.85 E-value=0.49 Score=45.82 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=36.8
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 113 NTLNSLVNMAC-YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+.+..+.. ..+.+..+.++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 86 ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVL 139 (388)
T PRK13705 86 QINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVL 139 (388)
T ss_pred HHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeE
Confidence 44444444444 333444567899999 889999999999999988999984
No 57
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=89.74 E-value=0.87 Score=41.48 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHHHH--HhhcCCCCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 114 TLNSLVNMAC--YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 114 ~~~al~~la~--~~~~p~~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
..+++..|.. .+.......++|+|| |-.||||++..++..|...|.+|.-
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll 137 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL 137 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4566766665 233334557899999 6779999999999999888988853
No 58
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=89.59 E-value=0.99 Score=39.43 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCCCcEEEEe---CCCCCcHHHHHHHHHHHh-CCCCeE
Q 022062 129 RFSGVLVGVT---GSVGKSTTKSMIALALES-LGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVT---GTnGKTTt~~ml~~iL~~-~g~~~~ 162 (303)
....++|+|| |-.||||++..|++.|.. .|++|.
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VL 69 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVL 69 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 4457899999 677999999999999954 588884
No 59
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=89.55 E-value=0.7 Score=40.08 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++++|+||++ .||||++..|+..|...|.++.
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTL 50 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3788998854 4799999999999988898874
No 60
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=89.55 E-value=0.46 Score=46.31 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=31.3
Q ss_pred hcCCCCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 126 ~~p~~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.|..++++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 115 r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVL 154 (405)
T PRK13869 115 RRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVL 154 (405)
T ss_pred CCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 3445567899999 888999999999999988899974
No 61
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=89.48 E-value=1.3 Score=41.81 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=57.2
Q ss_pred HHHHHcCCeecccCC--cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC--CCceEEEE
Q 022062 31 EIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106 (303)
Q Consensus 31 ~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~--~~~~~i~V 106 (303)
||++.+++++.++.. +++++.=. ...+ ++|-|+ ...+|++++.+ ..|.++++++.... +..+++.|
T Consensus 1 ~ia~~~~~~~~g~~~~~i~~~~~~~-~a~~--~~l~f~------~~~k~~~~l~~-~~a~aviv~~~~~~~~~~~~~~~v 70 (324)
T TIGR01853 1 ELAERLGAELKGNGDIVITGVAPLE-KAKA--NHITFL------ANPKYLKHLKS-SQAGAVIVSPDDQGLPAKCAALVV 70 (324)
T ss_pred ChhHHhCCEEeCCCCceEEcccChh-hCCC--CeEEEE------eCHHHHHHHhh-cCCcEEEecchhhcccCcceEEEE
Confidence 578888888876433 55554422 2466 888776 34678888777 78889998765432 24568889
Q ss_pred cCCCcccHHHHHHHHHHHh
Q 022062 107 EGNGNVNTLNSLVNMACYA 125 (303)
Q Consensus 107 ~~~~~~d~~~al~~la~~~ 125 (303)
+ |++.++.++..++
T Consensus 71 ~-----~p~~~~~~~~~~~ 84 (324)
T TIGR01853 71 K-----DPYLAFAKVAELF 84 (324)
T ss_pred C-----CHHHHHHHHHHHh
Confidence 9 9999999999854
No 62
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=87.84 E-value=0.12 Score=51.40 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=74.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhc----ccCCCCEEEEEecCCChhhHHHhhcc
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG----IDRAVDIAVLEMGMSGKGEILELARM 206 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~----~~~~~~~~V~E~~~s~~~~~~~l~~~ 206 (303)
..++|.|+|++||+++..+....+...+.++++..| -|...+....+.+ ....+.++..|...-+.+... -...
T Consensus 63 ~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTG-TNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~-~~~~ 140 (475)
T COG0769 63 GVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTG-TNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILE-PTGL 140 (475)
T ss_pred CCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcC-CCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCccc-ccCC
Confidence 356999999999999999999999664577776665 3555554333322 223456666665422223322 2234
Q ss_pred cCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCC-EEEEeCCChhh
Q 022062 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNADDPLV 257 (303)
Q Consensus 207 ~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g-~~Vin~Dd~~~ 257 (303)
..|+...++|+-.|++|...+....-.+-..+.+.. ..+ ...++ +++.+
T Consensus 141 tTP~~~~l~~~~~~~~d~~~e~~vmEvssh~l~~~R-v~~~~f~v~-~ftnl 190 (475)
T COG0769 141 TTPEALDLQNLLRDLLDRGAEIAVMEVSSHGLVQGR-VEGVTFDVG-VFTNL 190 (475)
T ss_pred CCccHHHHHHHHHHHHHcCCcEEEEEeehhHHHhCC-ccCceEEEE-ecccc
Confidence 789999999999999998875322222223334332 234 44455 44443
No 63
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.79 E-value=0.39 Score=41.53 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.2
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCC
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVN 160 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~ 160 (303)
+|||+|- .||||++..|++.|.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 6888884 68999999999999777766
No 64
>PRK05439 pantothenate kinase; Provisional
Probab=87.78 E-value=1.3 Score=41.65 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=27.1
Q ss_pred HHHHHhhcC-CCCCcEEEEeCCC--CCcHHHHHHHHHHHhC
Q 022062 120 NMACYARNS-RFSGVLVGVTGSV--GKSTTKSMIALALESL 157 (303)
Q Consensus 120 ~la~~~~~p-~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~ 157 (303)
.+..|++.+ .....+|||||+. ||||++..|..+|...
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 344466521 2335689999985 6999999999999653
No 65
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=87.49 E-value=0.69 Score=39.31 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=27.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+++++|+|. .||||+.+=|...|++.|+++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rV 33 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRV 33 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEE
Confidence 679999997 589999999999999999987
No 66
>COG2403 Predicted GTPase [General function prediction only]
Probab=87.42 E-value=0.6 Score=44.77 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=28.0
Q ss_pred CcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.|+|+|||| .|||+++.+++++|++.|++++
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 578999988 6999999999999999999974
No 67
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=87.15 E-value=6.8 Score=29.72 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=34.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCC
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~ 196 (303)
+++--|-.||||++..++..|...|.++..--.. ...+++|+.++.+.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d---------------~~~d~viiD~p~~~ 51 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD---------------PQYDYIIIDTPPSL 51 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCC---------------CCCCEEEEeCcCCC
Confidence 4566788999999999999997777777432111 11789999987443
No 68
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=87.06 E-value=2.9 Score=34.43 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=22.4
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|+|+|.|- .||||..+.|...|.+.|+++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 46777775 5999999999888888999874
No 69
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.27 E-value=3.6 Score=38.75 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|++.|-| |||||...|+..|...|.++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 4577776654 799999999999988877763
No 70
>PRK07667 uridine kinase; Provisional
Probab=86.16 E-value=1.6 Score=37.81 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=25.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+|||+|- .||||++..|++.|...|.++
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 379999996 689999999999998777764
No 71
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=86.03 E-value=0.9 Score=33.31 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=23.1
Q ss_pred EEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 135 IgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.++|. .||||++..++..|.+.|+++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~ 31 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVL 31 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 556655 6999999999999988888874
No 72
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=85.92 E-value=0.8 Score=39.40 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=20.0
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
.|+||||- ||||++..|+ -| |+++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l---g~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL---GYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh---CCcee
Confidence 69999995 6999998888 54 66664
No 73
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=85.46 E-value=1.6 Score=41.84 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHHhh-cCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 111 NVNTLNSLVNMACYAR-NSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 111 ~~d~~~al~~la~~~~-~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+.+-|.++-..+. .+..++++|+|+|. .||||...-+...|+..|+++.
T Consensus 183 nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~ 237 (366)
T PRK14489 183 NVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIG 237 (366)
T ss_pred cCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 3577788877655332 23445789999994 6899999989989988898873
No 74
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=84.97 E-value=1.2 Score=42.96 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=28.9
Q ss_pred CCCCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 128 SRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 128 p~~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|..++++|+|+ |-.|||||+..|+..|...|++|.
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL 137 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 34556888887 677899999999999988898873
No 75
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=84.53 E-value=13 Score=35.12 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCCCcEEEE----eCCCCCcHHHHHHHHHHHhCCCCe-EEecCC
Q 022062 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNV-FQSYGN 167 (303)
Q Consensus 129 ~~~~~vIgV----TGTnGKTTt~~ml~~iL~~~g~~~-~~t~g~ 167 (303)
+.+.+||.| +|-.|||-++.+|+..|++.|+++ +-+.|+
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 445788877 789999999999999999999886 445553
No 76
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=84.42 E-value=1.1 Score=40.35 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=22.4
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|-.||||++.-|+..|...|++|.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEE
Confidence 6788999999999999988898874
No 77
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=84.32 E-value=1.2 Score=39.81 Aligned_cols=31 Identities=32% Similarity=0.299 Sum_probs=27.5
Q ss_pred CcEEEEeCCC---CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~~ 162 (303)
++.+-||||. |||.++..|++.|++.|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4678999996 999999999999999999873
No 78
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=84.23 E-value=1.7 Score=40.50 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
...+|||+|.+ ||||++.+|..+|..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35689999986 799999999999963
No 79
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=84.16 E-value=0.91 Score=39.97 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=21.3
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+||+||. .||||++.+++. + |++++
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---GFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---CCeEE
Confidence 568999997 789999888776 4 66653
No 80
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=83.69 E-value=1.3 Score=40.46 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=25.1
Q ss_pred cEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|+ |=.|||||+--|+..|.+.|++|.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVl 33 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKIL 33 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 567776 457899999999999998999983
No 81
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=83.62 E-value=12 Score=35.60 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 130 FSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 130 ~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
.+..+|||||.. ||||....+...|+..|.++
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v 87 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKV 87 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 446799999986 79999999999998888776
No 82
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.44 E-value=1 Score=41.52 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.7
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
+|||||++ ||||++.-+.++|...|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 58999985 79999999999998777654
No 83
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=82.72 E-value=1.4 Score=39.51 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=25.9
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+++|+|+| -.||||+..-|...|+..|+++
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V 32 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRV 32 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeE
Confidence 46899999 7899999988888888888887
No 84
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.74 E-value=10 Score=36.85 Aligned_cols=22 Identities=50% Similarity=0.594 Sum_probs=16.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 022062 134 LVGVTGSVGKSTTKSMIALALES 156 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~ 156 (303)
++|.|| .|||||..-|+..|..
T Consensus 179 lvGptG-vGKTTT~aKLA~~~~~ 200 (388)
T PRK12723 179 LVGPTG-VGKTTTIAKLAAIYGI 200 (388)
T ss_pred EECCCC-CCHHHHHHHHHHHHHh
Confidence 345554 3899999999988853
No 85
>PRK14974 cell division protein FtsY; Provisional
Probab=81.20 E-value=18 Score=34.47 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+|+++|.+ |||||...++..|...|.++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~ 172 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 35688888876 699999999999988888773
No 86
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=80.93 E-value=3.1 Score=38.13 Aligned_cols=122 Identities=22% Similarity=0.291 Sum_probs=62.8
Q ss_pred HHHHHhhcCCCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEE---------ecCCCcC-c----------------
Q 022062 120 NMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVFQ---------SYGNWNN-R---------------- 171 (303)
Q Consensus 120 ~la~~~~~p~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~---------t~g~~n~-~---------------- 171 (303)
.|...|.+ ..+..+|||||+- ||||...-+...|.+.|.++.- |-|.+-. +
T Consensus 18 ll~~l~~~-~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS 96 (266)
T PF03308_consen 18 LLKRLYPH-TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRS 96 (266)
T ss_dssp HHHHHGGG-TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEE
T ss_pred HHHHHHhh-cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEee
Confidence 34445544 3456899999985 7999998888888888888621 1111100 0
Q ss_pred ------c-chhhHH----hcc-cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHh
Q 022062 172 ------V-GVALSL----IGI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239 (303)
Q Consensus 172 ------~-g~p~~l----~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~ 239 (303)
. |++... .-+ ..+.|++++|.-=-...+. .+..+++.-+.|++.-.-|-+.. .|+.++
T Consensus 97 ~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-~I~~~aD~~v~v~~Pg~GD~iQ~---------~KaGim 166 (266)
T PF03308_consen 97 MATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-DIADMADTVVLVLVPGLGDEIQA---------IKAGIM 166 (266)
T ss_dssp E---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-HHHTTSSEEEEEEESSTCCCCCT---------B-TTHH
T ss_pred cCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-HHHHhcCeEEEEecCCCccHHHH---------Hhhhhh
Confidence 0 111111 112 3689999999831122232 34455667777776644444433 344444
Q ss_pred hcCCCCCEEEEeCCCh
Q 022062 240 QESKLGDVCVLNADDP 255 (303)
Q Consensus 240 ~~~~~~g~~Vin~Dd~ 255 (303)
+- ....|+|..|.
T Consensus 167 Ei---aDi~vVNKaD~ 179 (266)
T PF03308_consen 167 EI---ADIFVVNKADR 179 (266)
T ss_dssp HH----SEEEEE--SH
T ss_pred hh---ccEEEEeCCCh
Confidence 43 35789997664
No 87
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=80.88 E-value=1.9 Score=38.23 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=25.4
Q ss_pred CcEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+++|+|++ -.||||++.-|+..|...|++|.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 35677755 77999999999999988898873
No 88
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.37 E-value=17 Score=35.47 Aligned_cols=129 Identities=21% Similarity=0.307 Sum_probs=70.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCeEEecC-CC----------c-Cccc----------hhhHHhc------ccCCCC
Q 022062 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYG-NW----------N-NRVG----------VALSLIG------IDRAVD 186 (303)
Q Consensus 135 IgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g-~~----------n-~~~g----------~p~~l~~------~~~~~~ 186 (303)
||+-|+ |||||+.=++.-++..|+++....+ .| | ...+ .|..+.. -.+++|
T Consensus 107 VGLqG~-GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 107 VGLQGS-GKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred EeccCC-CcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 555554 7999999999999999999743222 11 1 0111 2333331 157789
Q ss_pred EEEEEecCCChh------hHHHhhcccCccEEEEc---CCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhh
Q 022062 187 IAVLEMGMSGKG------EILELARMARPEIRVVL---NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257 (303)
Q Consensus 187 ~~V~E~~~s~~~------~~~~l~~~~~p~iaViT---Ni~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~ 257 (303)
..++..|-.|.. ++..+.+.++||-.||- +|++. .++-++++.+-. .-|.+|+.-=|-..
T Consensus 186 vIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa-------ae~Qa~aFk~~v----dvg~vIlTKlDGha 254 (483)
T KOG0780|consen 186 VIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA-------AEAQARAFKETV----DVGAVILTKLDGHA 254 (483)
T ss_pred EEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh-------HHHHHHHHHHhh----ccceEEEEecccCC
Confidence 988888644432 23345566888887773 44432 244444443333 23445554333222
Q ss_pred h---hhc--CCCCCeEEEEecCC
Q 022062 258 A---NLT--VPRGVRKVFFGWRR 275 (303)
Q Consensus 258 ~---~~~--~~~~~~vit~g~~~ 275 (303)
+ .+. ...+.+|+..|..+
T Consensus 255 kGGgAlSaVaaTksPIiFIGtGE 277 (483)
T KOG0780|consen 255 KGGGALSAVAATKSPIIFIGTGE 277 (483)
T ss_pred CCCceeeehhhhCCCEEEEecCc
Confidence 2 111 11236888888765
No 89
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=80.00 E-value=7.7 Score=36.33 Aligned_cols=171 Identities=20% Similarity=0.208 Sum_probs=82.1
Q ss_pred CcEEEEe--cCCcC--ChhhcHHHhHhcCCceEEEEccc-CCC----------CCceEEEEcCCCcccHHHHHHHHHH-H
Q 022062 61 NQWFFAI--TGQHF--DAHEFISPELYGKGCVGVIGNQV-CNN----------WDKGFVQVEGNGNVNTLNSLVNMAC-Y 124 (303)
Q Consensus 61 g~lFval--~G~~~--dg~~~i~~A~~~~GA~~vv~~~~-~~~----------~~~~~i~V~~~~~~d~~~al~~la~-~ 124 (303)
..+.+.+ .|... +-...+.+|++ +|-..|=-=.. +.. .++.++-|. .+...+ .++. .
T Consensus 34 ~~liiGiA~~GG~lp~~w~~~i~~Ai~-~Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~DvR-----~p~~~~-~~~~g~ 106 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLPPSWRPVILEAIE-AGLDIVSGLHDFLSDDPELAAAAKKNGVRIIDVR-----KPPKDL-PVASGR 106 (301)
T ss_dssp SEEEE---STTHCCHCCHHHHHHHHHH-TT-EEEE-SSS-HCCHHHHHCCHHCCT--EEETT-----S--SS------SG
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHH-cCCCEEecChhhhccCHHHHHHHHHcCCeEeecc-----CCCccc-ccccCc
Confidence 5555543 23332 44578899999 99764431111 110 145566444 442222 3333 2
Q ss_pred hhcCCCCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCe--EEec--CCCcCccchhhH--------------HhcccC
Q 022062 125 ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNV--FQSY--GNWNNRVGVALS--------------LIGIDR 183 (303)
Q Consensus 125 ~~~p~~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~--~~t~--g~~n~~~g~p~~--------------l~~~~~ 183 (303)
.+ .-+.++|.+-|| .||-||+.+|...|++.|+++ .+|- |-.-...|+|+. +....+
T Consensus 107 ~~--~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~ 184 (301)
T PF07755_consen 107 IR--EVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE 184 (301)
T ss_dssp GG--G-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC
T ss_pred cc--cCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc
Confidence 22 124678888887 699999999999999999987 2321 111122233321 112232
Q ss_pred CCCEEEEEe--cCCChh----hHHHhhcccCccEEEEc-CCChhhhhcc-----CCHHHHHHHHHHHhhc
Q 022062 184 AVDIAVLEM--GMSGKG----EILELARMARPEIRVVL-NVGDSHLESL-----GSLEDVARAKGEIFQE 241 (303)
Q Consensus 184 ~~~~~V~E~--~~s~~~----~~~~l~~~~~p~iaViT-Ni~~dHld~~-----gt~e~~~~aK~~l~~~ 241 (303)
+.++.++|- |.+|+. .+.-+ ...+||..|+- .-++-|++.| ++++++.+.-..+...
T Consensus 185 ~~d~ivVEGQgsL~hPay~gvsl~lL-~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~~ 253 (301)
T PF07755_consen 185 EHDWIVVEGQGSLSHPAYSGVSLGLL-HGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAGT 253 (301)
T ss_dssp C-SEEEEE--S-TTSTTTHHCHHHHH-HHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCCG
T ss_pred CCCEEEEeccccccCccccccchhhh-ccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhcc
Confidence 459999996 334433 22223 33689998874 4667777765 5677777666555543
No 90
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=79.84 E-value=2.5 Score=37.70 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCCcEEEEeC--CCCCcHHHHHHHHHHH
Q 022062 130 FSGVLVGVTG--SVGKSTTKSMIALALE 155 (303)
Q Consensus 130 ~~~~vIgVTG--TnGKTTt~~ml~~iL~ 155 (303)
.+..+|||+| .+||||++..|.+.|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3457899999 4689999999999995
No 91
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=79.72 E-value=6.4 Score=31.92 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=41.0
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCC------ChhhHHHhhcccCccE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS------GKGEILELARMARPEI 211 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s------~~~~~~~l~~~~~p~i 211 (303)
+| .|||+++.-+...|++.+.++..-.-. ..+|++++|-.-+ .......+...++..+
T Consensus 8 ~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~---------------~~~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~v 71 (134)
T cd03109 8 TD-IGKTVATAILARALKEKGYRVAPLKPV---------------QTYDFVLVEGAGGLCVPLKEDFTNADVAKELNLPA 71 (134)
T ss_pred CC-cCHHHHHHHHHHHHHHCCCeEEEEecC---------------CCCCEEEEECCCccccCCCCCCCHHHHHHHhCCCE
Confidence 44 799999999999998888887431110 0168888886311 1112223333457778
Q ss_pred EEEcCCCh
Q 022062 212 RVVLNVGD 219 (303)
Q Consensus 212 aViTNi~~ 219 (303)
.++++...
T Consensus 72 llV~~~~~ 79 (134)
T cd03109 72 ILVTSAGL 79 (134)
T ss_pred EEEEcCCC
Confidence 88887653
No 92
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=79.62 E-value=2.2 Score=38.88 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.5
Q ss_pred cEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|. |=.|||||+--|+..|...|++|.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 456665 556799999999999988999983
No 93
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.52 E-value=35 Score=33.59 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=23.2
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+|++.|- .|||||...|+..|...|.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg 273 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 273 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE
Confidence 46666664 4799999999999977777763
No 94
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=79.51 E-value=2.3 Score=39.30 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.6
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
|++|+|+| -.||||...-|...|.+.| ++
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V 31 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RV 31 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CE
Confidence 56899999 8899999999999998888 66
No 95
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=79.41 E-value=1.9 Score=36.95 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+|+|+|. .||||.+..|+..|...|.++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 4778876 589999999999997766654
No 96
>COG4240 Predicted kinase [General function prediction only]
Probab=79.09 E-value=5.1 Score=36.27 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCC-CCe
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLG-VNV 161 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g-~~~ 161 (303)
-....+.+++..+- +..+.-++||.|. +||||++..|..+|.+.| +++
T Consensus 32 l~Lpll~Kiap~~q-e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert 82 (300)
T COG4240 32 LHLPLLAKIAPWAQ-ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERT 82 (300)
T ss_pred HHHHHHHhhhhhhh-hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccce
Confidence 33445555554332 2455679999997 689999999999998888 455
No 97
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=78.67 E-value=4.5 Score=35.85 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 129 ~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
..+..+|||+|-+ ||||.+..|...|...+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 3456799999986 5999999999999766554
No 98
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=78.65 E-value=2.1 Score=38.89 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=25.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
++++.|=.||||++.-|++.|...|.+|..
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 456667789999999999999999998853
No 99
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=78.65 E-value=7.7 Score=32.28 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=41.3
Q ss_pred HhcccCCCCEEEEEecCCChhhH---HHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Q 022062 178 LIGIDRAVDIAVLEMGMSGKGEI---LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253 (303)
Q Consensus 178 l~~~~~~~~~~V~E~~~s~~~~~---~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~D 253 (303)
|.....+++.++|=.+++..... ....-+-+|-++|||-++.+ .+.+++.++|..|-.. .-.....+++-
T Consensus 57 Li~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~-----~~~~~i~~a~~~L~~a-G~~~if~vS~~ 129 (143)
T PF10662_consen 57 LIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLP-----SDDANIERAKKWLKNA-GVKEIFEVSAV 129 (143)
T ss_pred HHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCc-----cchhhHHHHHHHHHHc-CCCCeEEEECC
Confidence 33445678888888876554221 11112348999999976533 3567888887766543 22234555543
No 100
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.45 E-value=2 Score=37.53 Aligned_cols=27 Identities=48% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+||.||+ |||||..=|+..+...+.++
T Consensus 6 lvGptGv-GKTTt~aKLAa~~~~~~~~v 32 (196)
T PF00448_consen 6 LVGPTGV-GKTTTIAKLAARLKLKGKKV 32 (196)
T ss_dssp EEESTTS-SHHHHHHHHHHHHHHTT--E
T ss_pred EECCCCC-chHhHHHHHHHHHhhccccc
Confidence 5666664 89999999999998787776
No 101
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.00 E-value=3 Score=35.21 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.8
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+++|+|+| -.||||....|...|...|+++
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V 32 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRV 32 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 46899999 5799999999999998888876
No 102
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.84 E-value=14 Score=36.44 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=23.3
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|.++|- .|||||+.-|+..|...|+++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~ 127 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 345555553 4899999999999988887763
No 103
>PRK10037 cell division protein; Provisional
Probab=77.53 E-value=2.8 Score=37.69 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=24.9
Q ss_pred cEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|. |=.||||++.-|+..|.+.|++|.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVL 34 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEE
Confidence 466665 567899999999999988999884
No 104
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=77.22 E-value=3.1 Score=36.67 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCCCcEEEEeCCCCC--cHHHHHHHHHHHhCCCCe
Q 022062 129 RFSGVLVGVTGSVGK--STTKSMIALALESLGVNV 161 (303)
Q Consensus 129 ~~~~~vIgVTGTnGK--TTt~~ml~~iL~~~g~~~ 161 (303)
+.+-++|+||||+|- |||+.-...|++....+.
T Consensus 2 SaKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 2 SAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 345789999999875 666777888887776654
No 105
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=77.10 E-value=3 Score=37.36 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=52.7
Q ss_pred cEEEEe---CCCCCcHHHHHHHHHHHhCCCCeEEe-c---CC---Cc------Cccc--------hhhHHh-----cc-c
Q 022062 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQS-Y---GN---WN------NRVG--------VALSLI-----GI-D 182 (303)
Q Consensus 133 ~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~~t-~---g~---~n------~~~g--------~p~~l~-----~~-~ 182 (303)
++|+|+ |=.||||++-.|+..|...|++|..- . ++ +. +... .....+ .. .
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAEL 81 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhh
Confidence 456665 55689999999999998889887321 1 11 00 0000 001111 12 2
Q ss_pred CCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHH
Q 022062 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230 (303)
Q Consensus 183 ~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~ 230 (303)
.+.|++++-+..+.. ...+.. +..-|.. +.-+.++.+|..++.+-
T Consensus 82 ~~yD~iiID~pp~~~-~~~~~a-l~~aD~v-liP~~ps~~d~~~~~~~ 126 (231)
T PRK13849 82 QGFDYALADTHGGSS-ELNNTI-IASSNLL-LIPTMLTPLDIDEALST 126 (231)
T ss_pred CCCCEEEEeCCCCcc-HHHHHH-HHHCCEE-EEeccCcHHHHHHHHHH
Confidence 468999999975443 333321 2344554 45567777765544333
No 106
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=76.99 E-value=3.1 Score=37.43 Aligned_cols=30 Identities=47% Similarity=0.614 Sum_probs=25.9
Q ss_pred cEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|.|| |-.|||||+.-|...|...|.+++
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~ 35 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV 35 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEE
Confidence 467777 778999999999999988999874
No 107
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=76.94 E-value=2.8 Score=38.30 Aligned_cols=30 Identities=40% Similarity=0.405 Sum_probs=24.4
Q ss_pred cEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|. |=.||||++--|+..|...|++|.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL 33 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL 33 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 455555 567899999999999999999873
No 108
>PRK00784 cobyric acid synthase; Provisional
Probab=76.52 E-value=2.8 Score=41.90 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=25.1
Q ss_pred cEEEEeCC---CCCcHHHHHHHHHHHhCCCCe
Q 022062 133 VLVGVTGS---VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 133 ~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+.|-|||| .|||+++..|.+.|++.|+++
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v 34 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRV 34 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 45778877 899999999999999888765
No 109
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.70 E-value=19 Score=35.45 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+|.-| +|||||+.=|+..|+..++++.
T Consensus 105 mvGLQG-sGKTTt~~KLA~~lkk~~~kvl 132 (451)
T COG0541 105 MVGLQG-SGKTTTAGKLAKYLKKKGKKVL 132 (451)
T ss_pred EEeccC-CChHhHHHHHHHHHHHcCCceE
Confidence 355556 4999999999999999888874
No 110
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=75.49 E-value=2.7 Score=37.27 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=19.5
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 134 LVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
+|||+|.+ ||||++..|..+|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888875 799999999999964
No 111
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=75.22 E-value=3.6 Score=38.14 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCcEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++++|+|. |-.|||||+.-|+..|.+.|++|.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVL 36 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKIL 36 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 35677665 456799999999999999999984
No 112
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=74.66 E-value=4.4 Score=37.27 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=25.2
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+.++|+++|. .|||||+.-|+..|...|.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V 103 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSV 103 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 3567877776 479999999999998888777
No 113
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=74.64 E-value=2.7 Score=36.72 Aligned_cols=29 Identities=34% Similarity=0.617 Sum_probs=23.6
Q ss_pred EEEE--eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgV--TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+|+| -|-.||||++..|+..|.+.|++|.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvL 32 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVL 32 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEE
Confidence 3444 4567899999999999988999873
No 114
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=74.14 E-value=2.7 Score=35.48 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=23.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+.-|=.||||++..|+..|...|++|.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vl 31 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVL 31 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEcCCCCccHHHHHHHHHhcccccccccc
Confidence 45556778999999999999988899984
No 115
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=74.13 E-value=5.5 Score=33.93 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=26.1
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|.|. .||||.+.+|++-|...|+++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 357888886 5899999999999988887774
No 116
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.59 E-value=13 Score=39.18 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=21.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH-hCCC-Ce
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE-SLGV-NV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~-~~g~-~~ 161 (303)
..+|++.|-| |||||...|+..+. ..|. ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV 218 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQL 218 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeE
Confidence 3567776665 69999999998773 4453 44
No 117
>PHA02518 ParA-like protein; Provisional
Probab=73.57 E-value=2.9 Score=36.00 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.7
Q ss_pred EEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 136 gVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+--|-.||||++..|+..|...|++|.
T Consensus 7 ~~KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 344678899999999999988898874
No 118
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.36 E-value=54 Score=32.36 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=25.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+++|- .|||||+.-|+..|...|.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 457777774 4899999999999988888873
No 119
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=73.36 E-value=2.7 Score=38.14 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.0
Q ss_pred CcEEEEeCC--CCCcHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIAL 152 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~ 152 (303)
|.+|||||. +||||++.++..
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~ 23 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILRE 23 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999997 799999999875
No 120
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=73.28 E-value=3.2 Score=35.11 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..|-|-||||- ||||+++.|+..+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 35679999995 6999999999877
No 121
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=73.07 E-value=2.8 Score=32.69 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+|+|+|. .||||++..|++-| |..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 4667775 48999999999988 5554
No 122
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=72.93 E-value=4 Score=40.25 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.1
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|++|+|+| -+||||..+-|...|+..|++|.
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVa 33 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVS 33 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 57899999 77999999988888989999873
No 123
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=72.66 E-value=5.4 Score=37.86 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.2
Q ss_pred CCCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.++|+|+| ..||||++.-|+..|.+.|++|.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVl 63 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVL 63 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4567787775 67899999999999988898873
No 124
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=72.14 E-value=2.8 Score=38.77 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=22.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGV 159 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~ 159 (303)
.+-+.|=+|| |||+++..++..+...|.
T Consensus 60 ~vll~G~pGT-GKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGT-GKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCC-CHHHHHHHHHHHHHHcCC
Confidence 3446788898 999999999999976654
No 125
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=72.02 E-value=8.3 Score=36.28 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=30.3
Q ss_pred CCCCcEEEE----eCCCCCcHHHHHHHHHHHhCCCCe-EEecC
Q 022062 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNV-FQSYG 166 (303)
Q Consensus 129 ~~~~~vIgV----TGTnGKTTt~~ml~~iL~~~g~~~-~~t~g 166 (303)
+.+.+||.| .|-.|||-++.+|+..|++.|+++ +-+.|
T Consensus 25 ~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 25 RAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred cCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 345678887 488999999999999999999886 34444
No 126
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=71.77 E-value=4.7 Score=35.86 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=24.4
Q ss_pred cEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|++ -.||||++..++..|...|++|.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vl 34 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEE
Confidence 4666654 67899999999999988888873
No 127
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=71.72 E-value=8.6 Score=31.35 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCCc-EE---EEeCCCCCcHHHHHHHHHHHhCCCC
Q 022062 118 LVNMACYARNSRFSGV-LV---GVTGSVGKSTTKSMIALALESLGVN 160 (303)
Q Consensus 118 l~~la~~~~~p~~~~~-vI---gVTGTnGKTTt~~ml~~iL~~~g~~ 160 (303)
+..+..++.+|..+.+ |+ |-||| |||-+++||+.-|-..|.+
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGt-GKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGT-GKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCC-cHHHHHHHHHHHHHhcccC
Confidence 3444554444333333 44 44554 8999999999998566654
No 128
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.26 E-value=9.1 Score=40.19 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHHHHHHH--HhhcCCCCCcEEEEeCCC---CCcHHHHHHHHHHHhCCCCeE
Q 022062 115 LNSLVNMAC--YARNSRFSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 115 ~~al~~la~--~~~~p~~~~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++..|.. .+..+....++|+||++. ||||++.-|+..|...|.+|.
T Consensus 512 ~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVL 564 (726)
T PRK09841 512 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 564 (726)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 455555543 222224457899999976 999999999999988998885
No 129
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=71.17 E-value=8.8 Score=36.56 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCCCcEEEE----eCCCCCcHHHHHHHHHHHhCCCCe-EEecCC
Q 022062 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNV-FQSYGN 167 (303)
Q Consensus 129 ~~~~~vIgV----TGTnGKTTt~~ml~~iL~~~g~~~-~~t~g~ 167 (303)
+...+||.| .|-.|||-++.+|+..|++.|+++ +-+.|.
T Consensus 53 ~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 53 RLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred cCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCC
Confidence 345678877 689999999999999999999886 445553
No 130
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=70.46 E-value=4.1 Score=33.87 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=24.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+-.|-.||||++..|+..|.+.|++|.
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vl 32 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVV 32 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 34456788999999999999988899874
No 131
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.66 E-value=7.4 Score=36.93 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=27.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~ 163 (303)
+.+|-+.|.| |||||..=|++.|.+.|++++.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 5677777776 6999999999999999999853
No 132
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=69.50 E-value=4.5 Score=33.88 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=22.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+|+|+|. .||||+...|...|+..|+++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~ 31 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVA 31 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3566663 5899999999999988888873
No 133
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=69.37 E-value=2.8 Score=37.85 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=22.7
Q ss_pred cEEEE--eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgV--TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+| -|-.|||||+.-|++.|...| +|.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence 34444 467899999999999997778 873
No 134
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=68.98 E-value=6 Score=35.94 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=23.5
Q ss_pred cEEEEe--CCCCCcHHHHHHHHHHHh-CCCCeE
Q 022062 133 VLVGVT--GSVGKSTTKSMIALALES-LGVNVF 162 (303)
Q Consensus 133 ~vIgVT--GTnGKTTt~~ml~~iL~~-~g~~~~ 162 (303)
++|+|+ |=.|||||+--|+..|.. .|++|.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvL 35 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVF 35 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEE
Confidence 456665 556799999999999965 599884
No 135
>PRK03846 adenylylsulfate kinase; Provisional
Probab=68.87 E-value=7.2 Score=33.69 Aligned_cols=32 Identities=41% Similarity=0.616 Sum_probs=26.1
Q ss_pred CCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+|+++| -.||||++.+|+..|...|..+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~ 56 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTY 56 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 456999999 78999999999998866666543
No 136
>PRK00889 adenylylsulfate kinase; Provisional
Probab=68.86 E-value=6.9 Score=32.86 Aligned_cols=31 Identities=39% Similarity=0.435 Sum_probs=25.2
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+..+|+++|. +||||++..|+..|...+.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3568888885 589999999999997777665
No 137
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=68.80 E-value=6.6 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=25.9
Q ss_pred CCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.+++++|+| -+||||...-|...|...|+++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~v 37 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRP 37 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeE
Confidence 467999999 4689999998888897778776
No 138
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=68.64 E-value=6 Score=33.86 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=26.9
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
--|+|||- .||||...-|+..|+..|+++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 35999997 57999999999999999998854
No 139
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=68.10 E-value=7.8 Score=32.66 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=23.9
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+|+|.|- .||||.+..|+..|...|+++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5667764 5899999999999988888764
No 140
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=68.04 E-value=4.3 Score=36.70 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=22.0
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|=.||||++.-|++.|...|++|.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4677999999999999988899874
No 141
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=67.71 E-value=5.2 Score=36.94 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=24.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
.-+|||.||. ||+||+..+..+|...+..
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 4589999995 8999999999999766544
No 142
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=67.65 E-value=3.6 Score=35.47 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=19.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+|||||. .||||++.+++. .|++++
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 6999997 789999887765 477664
No 143
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=67.54 E-value=6.3 Score=32.15 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=23.7
Q ss_pred cEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|+| ..||||++..++..|.+.+.+|.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 3566665 67999999999999988888874
No 144
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=67.52 E-value=6.2 Score=34.91 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=20.5
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|.+||+||. .||||++ +.|++.|++++
T Consensus 1 M~iVGLTGgiatGKStVs----~~f~~~G~~vI 29 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVS----QVFKALGIPVI 29 (225)
T ss_pred CeEEEeecccccChHHHH----HHHHHcCCcEe
Confidence 468999997 6899985 56667787764
No 145
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.24 E-value=6.5 Score=36.47 Aligned_cols=56 Identities=29% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 85 ~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
+|..+.|..+... .+|.+.-= +.-+.|..||-.- +-=.-+||-||| ||+||- ++++
T Consensus 93 r~~~g~VlRrI~~--~IPt~eeL-----~LPevlk~la~~k---RGLviiVGaTGS-GKSTtm---AaMi 148 (375)
T COG5008 93 RGLAGLVLRRIET--KIPTFEEL-----KLPEVLKDLALAK---RGLVIIVGATGS-GKSTTM---AAMI 148 (375)
T ss_pred cCcchhhhhhhhc--cCCcHHhc-----CCcHHHHHhhccc---CceEEEECCCCC-CchhhH---HHHh
Confidence 7877766554211 23332211 3335666676421 111345677776 788773 5555
No 146
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=67.17 E-value=4.4 Score=36.60 Aligned_cols=25 Identities=44% Similarity=0.695 Sum_probs=22.0
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|=.|||||+--|+..|.+.|++|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 5778999999999999988899873
No 147
>PRK11670 antiporter inner membrane protein; Provisional
Probab=67.08 E-value=6.8 Score=37.68 Aligned_cols=31 Identities=42% Similarity=0.543 Sum_probs=26.7
Q ss_pred CcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++|+|+ |-.|||||+.-|+..|.+.|++|.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVl 140 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVG 140 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4788997 567899999999999988898873
No 148
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.96 E-value=59 Score=31.76 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=24.3
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.++|+++| -.|||||..-|+..+...+.++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V 237 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTV 237 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 56788888 5789999999988886777776
No 149
>PRK05480 uridine/cytidine kinase; Provisional
Probab=66.87 E-value=5.6 Score=34.52 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.1
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+..+|+|+|- .||||++..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999997 58999999999998
No 150
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=66.46 E-value=5.6 Score=35.18 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=28.0
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEec
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSY 165 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~ 165 (303)
...|++-|- .||||...+|+..|++.|+++..|.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456777775 6899999999999999999886554
No 151
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=66.04 E-value=7.9 Score=34.40 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=23.2
Q ss_pred EEEEeCC---CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS---VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT---nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.+-|||| .|||+++..|.+.|++.|.++
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v 34 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTV 34 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3556655 799999999999999988875
No 152
>PRK10867 signal recognition particle protein; Provisional
Probab=65.84 E-value=72 Score=31.49 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=23.4
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhC-CCCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESL-GVNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~-g~~~ 161 (303)
..+|.++|- .|||||+.-++..|... |.++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV 132 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKV 132 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcE
Confidence 456777765 47999999999888777 7776
No 153
>PRK11519 tyrosine kinase; Provisional
Probab=65.45 E-value=15 Score=38.65 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHHHH--HhhcCCCCCcEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 114 TLNSLVNMAC--YARNSRFSGVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 114 ~~~al~~la~--~~~~p~~~~~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+++..|-. .+..+..+.++|+||+ -.||||++.-|+..|...|.+|.
T Consensus 506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvL 559 (719)
T PRK11519 506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVL 559 (719)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 3456666543 2223345568999998 46999999999999988899884
No 154
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=65.42 E-value=6.4 Score=38.86 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=25.3
Q ss_pred CcEEEEeCCC---CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~ 161 (303)
++.+-||||. |||+++..|...|++.|+++
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V 35 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRV 35 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence 5667788774 59999999999999999876
No 155
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=65.37 E-value=12 Score=31.62 Aligned_cols=31 Identities=42% Similarity=0.559 Sum_probs=26.1
Q ss_pred CCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+..+|.++| -+||||++..|...|...+..+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~ 49 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRV 49 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 357999999 8899999999999997666554
No 156
>PRK08233 hypothetical protein; Provisional
Probab=65.09 E-value=5.2 Score=33.50 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.6
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|+|+|. .||||.+..|+..|
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899887 58999999999888
No 157
>PLN02924 thymidylate kinase
Probab=64.80 E-value=10 Score=33.65 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 128 SRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 128 p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|......|+|.|- .||||.+.+|+..|+..|+++.
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 4455678999885 6899999999999998888864
No 158
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=64.67 E-value=6.8 Score=32.75 Aligned_cols=27 Identities=48% Similarity=0.528 Sum_probs=22.9
Q ss_pred EEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 136 gVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.--|-.||||++.-|+..|.+.|++|.
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vl 32 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVG 32 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEE
Confidence 334678999999999999988899984
No 159
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=64.60 E-value=5.6 Score=36.84 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=22.2
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|-.|||||+.-|+..|...|++|.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4678999999999999988999873
No 160
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=64.52 E-value=7.3 Score=33.52 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=24.3
Q ss_pred EEEEeCC---CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS---VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT---nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|-|||| .|||+++..|.+.|++.|.++
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v 32 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKV 32 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCce
Confidence 4667777 699999999999999999887
No 161
>PTZ00301 uridine kinase; Provisional
Probab=64.09 E-value=6.5 Score=34.74 Aligned_cols=24 Identities=29% Similarity=0.507 Sum_probs=19.5
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~ 155 (303)
..+|||+|- +||||.+..|.+-|.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 468999994 689999998876663
No 162
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=63.64 E-value=4.7 Score=34.20 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCeEEec
Q 022062 141 VGKSTTKSMIALALESLGVNVFQSY 165 (303)
Q Consensus 141 nGKTTt~~ml~~iL~~~g~~~~~t~ 165 (303)
+||||.+.+|+.-|+..|+++..+.
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~~~ 31 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVIITF 31 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcccccC
Confidence 5899999999999988888754443
No 163
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=63.53 E-value=6.7 Score=33.56 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.7
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHH
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~ 155 (303)
.++|+|+| |.||||.+.-|+.+++
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fn 33 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFN 33 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhC
Confidence 57899999 7999999999999993
No 164
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=63.43 E-value=7.3 Score=30.95 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.3
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|..||||++..+++.|.+.+.++.
T Consensus 7 kgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3678999999999999988888774
No 165
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=63.32 E-value=5.9 Score=35.81 Aligned_cols=30 Identities=40% Similarity=0.655 Sum_probs=24.1
Q ss_pred cEEEE--eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgV--TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+| -|-.|||||+.-|+..|...|++|.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL 34 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL 34 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 34444 4677999999999999988998873
No 166
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=62.11 E-value=13 Score=36.58 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCe
Q 022062 141 VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 141 nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.||||++--|-..|.+.|.+|
T Consensus 12 ~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 12 SGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred CcHHHHHHHHHHHHHhcCCcc
Confidence 699999999999998888776
No 167
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=62.02 E-value=4.9 Score=34.91 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.0
Q ss_pred EEEEeC--CCCCcHHHHHHHHHH
Q 022062 134 LVGVTG--SVGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTG--TnGKTTt~~ml~~iL 154 (303)
+|+|+| .+||||.+..|++.|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 478888 468999999999987
No 168
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=61.91 E-value=5.6 Score=34.19 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+|||+|- .||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4788885 58999999999998
No 169
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=61.58 E-value=40 Score=33.18 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=21.0
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHH-hCCCCe
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALE-SLGVNV 161 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~-~~g~~~ 161 (303)
.+|.+.|. .|||||+.-++..|. ..|.++
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV 131 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKV 131 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeE
Confidence 35555553 589999999998875 467776
No 170
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=61.52 E-value=6.5 Score=36.54 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.2
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|-.|||||+..|++.|.+.|++|.
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVL 32 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVL 32 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4678999999999999988999873
No 171
>PRK07933 thymidylate kinase; Validated
Probab=61.52 E-value=12 Score=32.97 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=24.5
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t 164 (303)
.|+|-|. .||||.+.+|+..|+..|+++..+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4556553 689999999999999988887543
No 172
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=61.18 E-value=5.2 Score=36.80 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=21.8
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
+|||+|.+ ||||.+.+|..+|...+..+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~v 30 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTV 30 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEE
Confidence 47888875 79999999999996544433
No 173
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=61.17 E-value=7.8 Score=34.25 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=22.4
Q ss_pred EEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 136 gVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+--|-.||||++.-|+..|.+.|++|.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~Vl 33 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVL 33 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 334678999999999999988888873
No 174
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=61.17 E-value=9.9 Score=33.25 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCe
Q 022062 141 VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 141 nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|||+++..|.+.|++.|+++
T Consensus 11 ~GKT~vs~~L~~~l~~~g~~v 31 (222)
T PRK00090 11 VGKTVVTAALAQALREAGYSV 31 (222)
T ss_pred cCHHHHHHHHHHHHHHcCCce
Confidence 799999999999999999876
No 175
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=61.03 E-value=12 Score=31.56 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=25.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
..+|=+||. .||||++..|.+-|.+.|+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~ 35 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYL 35 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 357888886 47999999999999999998854
No 176
>PRK07429 phosphoribulokinase; Provisional
Probab=60.92 E-value=8.4 Score=36.49 Aligned_cols=28 Identities=36% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCC
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLG 158 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g 158 (303)
+..+|||+|. +||||++..|+.+|...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 3568999995 589999999999995443
No 177
>PRK00698 tmk thymidylate kinase; Validated
Probab=60.62 E-value=15 Score=31.31 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=25.0
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|.|- .||||.+..|+.-|...|..+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~ 35 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVV 35 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 357888885 6899999999999987776654
No 178
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=60.62 E-value=11 Score=38.17 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
|--+|...|..-..+-...-...||||| |||-|. +.+....+.++
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT~---AnVI~~~~rPt 60 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGS-GKTFTM---ANVIAKVQRPT 60 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccC-CchhHH---HHHHHHhCCCe
Confidence 7789999998844331334568999997 899774 55555556665
No 179
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.52 E-value=10 Score=33.88 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=26.6
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|+.|-+|| ..||||.+.-|+++|++.+.++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46788888 68999999999999998888774
No 180
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=60.43 E-value=59 Score=26.81 Aligned_cols=70 Identities=13% Similarity=-0.030 Sum_probs=44.0
Q ss_pred ccCCCCEEEEEecCCChhh---HHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhh
Q 022062 181 IDRAVDIAVLEMGMSGKGE---ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257 (303)
Q Consensus 181 ~~~~~~~~V~E~~~s~~~~---~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~ 257 (303)
...+.++.++=-++.++.. ...+.-+.+|.|+|+|-++. .+.+++...|.-|.+. ......++++-|+..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DL------aed~dI~~~~~~L~ea-Ga~~IF~~s~~d~~g 133 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADL------AEDADISLVKRWLREA-GAEPIFETSAVDNQG 133 (148)
T ss_pred HhhccceeeeeecccCccccCCcccccccccceEEEEecccc------cchHhHHHHHHHHHHc-CCcceEEEeccCccc
Confidence 3456676666555555421 11222346889999998762 3467888888777754 345578888877654
No 181
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=60.21 E-value=41 Score=32.01 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCCCcEEEE----eCCCCCcHHHHHHHHHHHhCCCCe-EEecC
Q 022062 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNV-FQSYG 166 (303)
Q Consensus 129 ~~~~~vIgV----TGTnGKTTt~~ml~~iL~~~g~~~-~~t~g 166 (303)
..+.+||.| .|-+|||-+.-.|++.|++.|+++ +.+.|
T Consensus 44 ~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 44 RAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred cCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 445788875 799999999999999999999987 33444
No 182
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=59.56 E-value=7.5 Score=33.90 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=20.3
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|.+|||||. +||||++.++.. .|..++
T Consensus 1 m~~igitG~igsGKst~~~~l~~----~g~~vi 29 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS----EGFLIV 29 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 357999997 589999988874 365543
No 183
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=59.31 E-value=11 Score=37.33 Aligned_cols=28 Identities=36% Similarity=0.326 Sum_probs=22.8
Q ss_pred EEEeCC-CCCcHHHHHHHHHHHhCCCCeE
Q 022062 135 VGVTGS-VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 135 IgVTGT-nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|+=|+| .|||+++..|.+.|++.|+++.
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L~~~G~~V~ 32 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKALSRRKLRVQ 32 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCcee
Confidence 333555 7999999999999999998873
No 184
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=59.28 E-value=12 Score=34.69 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=26.8
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
....+|+|+|. .||||+...+...|...|.++
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v 65 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV 65 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 34789999996 479999999999888888776
No 185
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.96 E-value=12 Score=34.14 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=27.0
Q ss_pred CCcEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..++|+||- --|||||+..|+..|.+.|++|.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVl 90 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVL 90 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 367888874 46899999999999999999874
No 186
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=58.33 E-value=11 Score=32.67 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.5
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++|||||. +||||++.++++.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 47999996 68999999988764
No 187
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=57.76 E-value=28 Score=33.51 Aligned_cols=49 Identities=24% Similarity=0.118 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeC-CC-CCcHHHHHHHHHHHhCCCCe
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTG-SV-GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTG-Tn-GKTTt~~ml~~iL~~~g~~~ 161 (303)
|+..+|..+-..+..-+...|.+.|-| |+ ||||.+.||-.-.-..|++.
T Consensus 84 NlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 84 NLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred hHHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 888999888763322234455555555 55 99999988766555667764
No 188
>PRK13236 nitrogenase reductase; Reviewed
Probab=57.52 E-value=9 Score=35.50 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.0
Q ss_pred CCcEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++++|.|- |=.||||++--|+..|.+.|++|.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVL 38 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIL 38 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEE
Confidence 45666664 567899999999999999999984
No 189
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=57.50 E-value=8.4 Score=34.98 Aligned_cols=25 Identities=48% Similarity=0.675 Sum_probs=21.7
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-|=.||||++--|+..|...|++|.
T Consensus 8 KGGVGKTT~a~nLA~~La~~G~~Vl 32 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEMGKKVM 32 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4667999999999999988898874
No 190
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=57.45 E-value=11 Score=33.28 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=18.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+||+||. +||||++.+++.-|
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l 30 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL 30 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc
Confidence 357999996 78999999988654
No 191
>PRK06547 hypothetical protein; Provisional
Probab=57.27 E-value=17 Score=30.98 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=19.6
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+|+|+|-. ||||++..|++.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689998875 6999999998876
No 192
>PLN02422 dephospho-CoA kinase
Probab=57.25 E-value=8.5 Score=34.64 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=20.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|++|||||. .||||++.+++. .|..++
T Consensus 1 M~~igltG~igsGKstv~~~l~~----~g~~~i 29 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS----SGIPVV 29 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 357999996 689999988873 365553
No 193
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=56.67 E-value=14 Score=33.53 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=22.1
Q ss_pred EEEEeC--CCCCcHHHHH-HHHHHHhCCCCeE
Q 022062 134 LVGVTG--SVGKSTTKSM-IALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTG--TnGKTTt~~m-l~~iL~~~g~~~~ 162 (303)
.|+||| -.||||.+.+ +..++...|+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VL 33 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVL 33 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 578885 5899999999 7777755557764
No 194
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=55.74 E-value=11 Score=33.84 Aligned_cols=29 Identities=38% Similarity=0.471 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH-hCCCCeE
Q 022062 134 LVGVTGSVGKSTTKSMIALALE-SLGVNVF 162 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~-~~g~~~~ 162 (303)
+...-|=.|||||+-.++..|. ..|++|.
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEE
Confidence 4555688899999999999996 3447773
No 195
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=55.69 E-value=7.5 Score=33.18 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=17.2
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+|+|||+ .||||++.++++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899997 68999998887754
No 196
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=55.64 E-value=11 Score=32.10 Aligned_cols=24 Identities=42% Similarity=0.772 Sum_probs=19.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+|+|||. .||||++.++++ + |+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g~~~ 26 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---GIPV 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---CCCE
Confidence 4899986 689999999887 3 6655
No 197
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=55.57 E-value=10 Score=37.71 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=21.0
Q ss_pred eCC-CCCcHHHHHHHHHHHhCCCCe
Q 022062 138 TGS-VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 138 TGT-nGKTTt~~ml~~iL~~~g~~~ 161 (303)
|+| .|||.++..|..+|++.|+++
T Consensus 6 T~t~vGKT~v~~~L~~~l~~~G~~v 30 (475)
T TIGR00313 6 TTSSAGKSTLTAGLCRILARRGYRV 30 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 444 799999999999999999887
No 198
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=55.49 E-value=9 Score=33.95 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.5
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHH
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~ 155 (303)
.-+|||.| ..||||.+..+..+|.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~ 29 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFP 29 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHcc
Confidence 34789998 4799999999999994
No 199
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=55.02 E-value=7 Score=35.92 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=36.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
..++..+ +..+-+.++.+..+.|+..+-.||+.| .||.|.+.+.+.+.
T Consensus 8 m~lVlf~-----~ai~hi~ri~RvL~~~~Gh~LLvG~~G-sGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 8 MNLVLFD-----EAIEHIARISRVLSQPRGHALLVGVGG-SGRQSLARLAAFIC 55 (268)
T ss_dssp ------H-----HHHHHHHHHHHHHCSTTEEEEEECTTT-SCHHHHHHHHHHHT
T ss_pred cceeeHH-----HHHHHHHHHHHHHcCCCCCeEEecCCC-ccHHHHHHHHHHHh
Confidence 4466677 888888888887778787788999988 79999999999887
No 200
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=54.96 E-value=6.4 Score=32.64 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=16.4
Q ss_pred EEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 135 IgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|+|||+ .||||++..|+.. |..++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE
Confidence 788996 5899999888866 66654
No 201
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=54.80 E-value=9.1 Score=29.67 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.1
Q ss_pred EEeCCCCCcHHHHHHHHHH
Q 022062 136 GVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 136 gVTGTnGKTTt~~ml~~iL 154 (303)
|.+| .||||++..|+..+
T Consensus 5 G~~G-sGKtTia~~L~~~~ 22 (129)
T PF13238_consen 5 GIPG-SGKTTIAKELAERL 22 (129)
T ss_dssp ESTT-SSHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHH
Confidence 3444 48999999999986
No 202
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=54.75 E-value=15 Score=37.78 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.7
Q ss_pred CCCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 130 ~~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+++|+|.| -.||||..+-|-..|++.|+++
T Consensus 8 ~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rV 41 (597)
T PRK14491 8 LSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRL 41 (597)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceE
Confidence 3478999999 6799999988888898889887
No 203
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=54.34 E-value=6.3 Score=33.20 Aligned_cols=18 Identities=61% Similarity=0.759 Sum_probs=15.7
Q ss_pred EEeCCCCCcHHHHHHHHHH
Q 022062 136 GVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 136 gVTGTnGKTTt~~ml~~iL 154 (303)
||.|| ||||+..+|++-|
T Consensus 2 GVsG~-GKStvg~~lA~~l 19 (161)
T COG3265 2 GVSGS-GKSTVGSALAERL 19 (161)
T ss_pred CCCcc-CHHHHHHHHHHHc
Confidence 56664 9999999999999
No 204
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=54.26 E-value=11 Score=33.04 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=19.6
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHH-hCCCCe
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALE-SLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~-~~g~~~ 161 (303)
+-++|-||| |||+|+..|.+=+. ..+.++
T Consensus 26 ~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 26 IAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 567788886 89988765555553 555555
No 205
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=53.50 E-value=13 Score=32.31 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=20.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~ 155 (303)
..+|+|+|- +||||.+..|...|.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999996 589999999999985
No 206
>PRK13973 thymidylate kinase; Provisional
Probab=53.39 E-value=14 Score=32.40 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=25.8
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEe
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t 164 (303)
..|.+-|. .||||.+.+|++-|+..|+++..+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45666664 589999999999999999988654
No 207
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.70 E-value=11 Score=33.90 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 139 GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 139 GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|=.||||..-+|++.|.+.|.+|.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~ 34 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVA 34 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEE
Confidence 678999999999999988888873
No 208
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=52.63 E-value=11 Score=33.66 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
...+.|+-|-| ||||+-.||+.+|.-...+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~ 58 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCCce
Confidence 36799999988 5999999999999544333
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=52.48 E-value=26 Score=27.05 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+..+......+ ..+.+.|+|. .|||++...+...+...+..+
T Consensus 5 ~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v 50 (151)
T cd00009 5 EAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50 (151)
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe
Confidence 4445555433221 2345666665 479998888888775444444
No 210
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=52.45 E-value=72 Score=29.68 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=37.6
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhC--CCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhh---cc
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESL--GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA---RM 206 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~--g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~---~~ 206 (303)
.|.|+|. .||||+...|...+... ..+++ ++.. +..+.. ...+++.++.+... +.+..+. --
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~-tiEd-------~~El~~--~~~~~v~~~~~~~~-~~~~~~l~~aLR 202 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVV-IIED-------TRELQC--AAPNVVQLRTSDDA-ISMTRLLKATLR 202 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEE-EECC-------chhhcC--CCCCEEEEEecCCC-CCHHHHHHHHhc
Confidence 4556664 48999988777666332 33443 4432 222211 12344555554221 1222211 11
Q ss_pred cCccEEEEcCCC
Q 022062 207 ARPEIRVVLNVG 218 (303)
Q Consensus 207 ~~p~iaViTNi~ 218 (303)
.+||..++--|.
T Consensus 203 ~~pD~iivGEiR 214 (299)
T TIGR02782 203 LRPDRIIVGEVR 214 (299)
T ss_pred CCCCEEEEeccC
Confidence 589999998776
No 211
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=52.38 E-value=11 Score=32.43 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=17.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIAL 152 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~ 152 (303)
+.+|||||. .||||++.+++.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~ 24 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE 24 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 457999995 689999998887
No 212
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=52.25 E-value=11 Score=32.96 Aligned_cols=20 Identities=55% Similarity=0.692 Sum_probs=17.1
Q ss_pred cEEEEeCC--CCCcHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIAL 152 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~ 152 (303)
.+|||||. +||||++.++..
T Consensus 6 ~~igitG~igsGKSt~~~~l~~ 27 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE 27 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 57999997 589999988875
No 213
>PRK12377 putative replication protein; Provisional
Probab=52.25 E-value=28 Score=31.62 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=22.0
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.++|. .|||..+..|+..|...|+.+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 4555553 4899999999998877888774
No 214
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=52.12 E-value=13 Score=33.75 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 114 ~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.++.+.++..+... ...+-+.|-+|| |||+.+..+++.+ |.++
T Consensus 7 ~~~l~~~~l~~l~~-g~~vLL~G~~Gt-GKT~lA~~la~~l---g~~~ 49 (262)
T TIGR02640 7 VKRVTSRALRYLKS-GYPVHLRGPAGT-GKTTLAMHVARKR---DRPV 49 (262)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEcCCCC-CHHHHHHHHHHHh---CCCE
Confidence 34444555555544 344556777776 8999999999866 4554
No 215
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.85 E-value=30 Score=36.39 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=27.7
Q ss_pred CCCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
....++|+||++ .||||++.-|+..|...|.+|.
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvL 579 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRAL 579 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEE
Confidence 345678888865 6899999999999988888874
No 216
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=51.58 E-value=12 Score=31.96 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=17.5
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
+-++||+|| ||||+..++.+-|
T Consensus 15 i~vmGvsGs-GKSTigk~L~~~l 36 (191)
T KOG3354|consen 15 IVVMGVSGS-GKSTIGKALSEEL 36 (191)
T ss_pred EEEEecCCC-ChhhHHHHHHHHh
Confidence 345666664 8999999999998
No 217
>PRK10818 cell division inhibitor MinD; Provisional
Probab=51.16 E-value=13 Score=33.47 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=24.3
Q ss_pred cEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|+ |=.||||++..|+..|...|++|.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vl 35 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 456665 567899999999999988888873
No 218
>PRK04040 adenylate kinase; Provisional
Probab=51.00 E-value=14 Score=31.91 Aligned_cols=29 Identities=31% Similarity=0.265 Sum_probs=21.8
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+++|+|||. .||||.+..+++-|. .++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 357888886 589999999999883 34444
No 219
>PLN02796 D-glycerate 3-kinase
Probab=50.56 E-value=16 Score=34.87 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHh---hcCC-CCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 113 NTLNSLVNMACYA---RNSR-FSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 113 d~~~al~~la~~~---~~p~-~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
.....+..+.... +... .+.-+|||.|.+ ||||++..|..+|...+.++
T Consensus 77 ~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 77 VYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred cHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 4445555555422 1111 234579999974 79999999999996655543
No 220
>PLN02348 phosphoribulokinase
Probab=49.32 E-value=23 Score=34.54 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHh
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALES 156 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~ 156 (303)
+..+|||+|- +||||.+..|+++|..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999996 5899999999999954
No 221
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=49.19 E-value=18 Score=33.28 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=22.9
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
|+.|.++| ..||||.+.-|.+.|+..+.++
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v 32 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEV 32 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--E
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 46788888 6899999999999998877776
No 222
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=49.14 E-value=14 Score=26.09 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+|+|+|. .||||.+..+++.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3677775 47999999999998
No 223
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=49.09 E-value=9.5 Score=37.85 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=46.6
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCcc
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ 210 (303)
.-|-|+|. .||||.+..++..+...| ++.+|..+ |-.|+--++=++|.=+|.++....++ .-.++||
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~G-kiVKTmEs-------PRDl~v~~eITQYs~l~g~me~t~Di---LLLvRPD 332 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQG-KIVKTMES-------PRDLQVSPEITQYSPLEGDMEKTADI---LLLVRPD 332 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHhcC-cEEeeccC-------cccccCChhhhhcccccCchhhhccE---EEEecCC
Confidence 34777776 579999999999996666 57777754 32222112234666666654433332 2346888
Q ss_pred EEEEcCCC
Q 022062 211 IRVVLNVG 218 (303)
Q Consensus 211 iaViTNi~ 218 (303)
+-|+--+.
T Consensus 333 YTIyDEmR 340 (604)
T COG1855 333 YTIYDEMR 340 (604)
T ss_pred ceehhhhh
Confidence 88875543
No 224
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=49.03 E-value=13 Score=36.11 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=17.6
Q ss_pred CcEEEEeCC--CCCcHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIAL 152 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~ 152 (303)
|..|||||. .||||++.+|+.
T Consensus 1 m~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 357999995 799999998876
No 225
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=48.41 E-value=18 Score=31.42 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEecC
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYG 166 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~g 166 (303)
+..+|=.||= .||||++..++..|.+.|+.+..--|
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3457777775 48999999999999999999864434
No 226
>CHL00175 minD septum-site determining protein; Validated
Probab=48.36 E-value=16 Score=33.20 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=25.9
Q ss_pred CcEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++|+|++ -.||||++.-|+..|...|++|.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVA 48 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 46888876 56899999999999988888873
No 227
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=47.80 E-value=17 Score=32.32 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.4
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|+|.|+ .||||.+++|++=|
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 468999997 68999999999988
No 228
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=47.63 E-value=12 Score=32.60 Aligned_cols=19 Identities=42% Similarity=0.758 Sum_probs=15.0
Q ss_pred EEEEeCCC--CCcHHHHHHHH
Q 022062 134 LVGVTGSV--GKSTTKSMIAL 152 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~ 152 (303)
+|||||.+ ||||++.+++.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 48999985 79998887754
No 229
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=46.76 E-value=23 Score=33.95 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
++..+|+|+|. +||||....|...|+.. +++
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V 35 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSV 35 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceE
Confidence 34678999994 68999999999999766 766
No 230
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=46.59 E-value=20 Score=30.92 Aligned_cols=22 Identities=45% Similarity=0.477 Sum_probs=18.5
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+++|||.| ||||...+|+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 589999998 7999999998543
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=46.51 E-value=37 Score=28.37 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.+..+|.++|- .||||.+..|+.-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34557777775 579999999999996555554
No 232
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=46.49 E-value=38 Score=34.58 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeC--CCCCcHHHHHHHHHHHh-CCCCe
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALES-LGVNV 161 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTG--TnGKTTt~~ml~~iL~~-~g~~~ 161 (303)
+..+.|+++|.....+..+|.+|| -.||||++..|+..|.. .|.++
T Consensus 376 eV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~ 424 (568)
T PRK05537 376 EVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPV 424 (568)
T ss_pred HHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceE
Confidence 455567776654344456889998 46899999999999965 44433
No 233
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=45.80 E-value=28 Score=35.03 Aligned_cols=32 Identities=38% Similarity=0.428 Sum_probs=27.5
Q ss_pred CCcEEEEeC------CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTG------TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..++|.||. --|||||+-=|++.|.+.|.+++
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 467999999 34899999999999988898764
No 234
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=45.69 E-value=21 Score=29.43 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 135 VGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 135 IgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
|++.|- .||||+...++..+...+.++
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v 30 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRV 30 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 455543 579999999999998888776
No 235
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=45.64 E-value=61 Score=31.57 Aligned_cols=49 Identities=27% Similarity=0.178 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHhhcC---CCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 113 NTLNSLVNMACYARNS---RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 113 d~~~al~~la~~~~~p---~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
|...++..+..-+..+ .....++.|-|= .||||.+.+|+.-|-+.|+++
T Consensus 51 d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v 104 (398)
T COG1341 51 DRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKV 104 (398)
T ss_pred HhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceE
Confidence 6666666666522211 123456777663 699999999999887888876
No 236
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.59 E-value=2.6e+02 Score=28.04 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=21.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH-hCCC-Ce
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE-SLGV-NV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~-~~g~-~~ 161 (303)
..+|++.|-| |||||...|+..+. ..|. ++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV 289 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKV 289 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeE
Confidence 3577777765 79999999998874 3443 55
No 237
>PRK06762 hypothetical protein; Provisional
Probab=45.24 E-value=20 Score=29.64 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.8
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++|.++|. .||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888884 68999999999887
No 238
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=44.89 E-value=27 Score=40.74 Aligned_cols=53 Identities=30% Similarity=0.405 Sum_probs=36.4
Q ss_pred CceEEEEcCCC---cccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 100 DKGFVQVEGNG---NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 100 ~~~~i~V~~~~---~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
.+|++...+++ +......|.+|+...+. ....-.||=||| ||||+..+|+-.|
T Consensus 433 ~~~i~s~s~nsfAfTs~sl~lleql~~~Iq~-nep~LLVGeTGt-GKTT~IQ~La~~l 488 (4600)
T COG5271 433 EIPIISLSGNSFAFTSCSLWLLEQLLWNIQN-NEPTLLVGETGT-GKTTMIQYLALKL 488 (4600)
T ss_pred cccceeecccceeehhhHHHHHHHHHHHhcc-CCceEEEecCCC-chhhHHHHHHHHh
Confidence 35565555444 22456666677764443 344567999998 8999999999999
No 239
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=44.88 E-value=25 Score=35.61 Aligned_cols=35 Identities=37% Similarity=0.420 Sum_probs=26.4
Q ss_pred CCCCcEEEEeCCC------CCcHHHHHHHHHHHhCCCCeEE
Q 022062 129 RFSGVLVGVTGSV------GKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 129 ~~~~~vIgVTGTn------GKTTt~~ml~~iL~~~g~~~~~ 163 (303)
+.+.+.|-||+.+ |||||+-=|++.|...|++++.
T Consensus 51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 91 (557)
T PF01268_consen 51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIA 91 (557)
T ss_dssp S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEE
T ss_pred cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEE
Confidence 3457889999986 9999999999999999998743
No 240
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=44.78 E-value=1e+02 Score=23.54 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHcCCeecccCC-----cceEEe--c-----cCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC
Q 022062 31 EIAESVNGKILKWGP-----PGIICT--D-----TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98 (303)
Q Consensus 31 ~l~~~~~~~~~~~~~-----i~~i~~--d-----sr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~ 98 (303)
+|++.++|+++...+ +..+.. . ...+++ |+|.+. .|.| .+-+..|+. .|++++|.......
T Consensus 1 ~I~~~L~~~~l~g~~~~~~~~~~v~v~a~~~~~~~~~~~~--~~lvIt-~gdR---~di~~~a~~-~~i~~iIltg~~~~ 73 (105)
T PF07085_consen 1 DIAKTLDGEVLNGGEELDRRVGKVVVGAMSLSDFLEYLKP--GDLVIT-PGDR---EDIQLAAIE-AGIACIILTGGLEP 73 (105)
T ss_dssp HHHHHTT-EEEE--TTS--EESEEEE-SS-HHHHHHCHHT--TEEEEE-ETT----HHHHHHHCC-TTECEEEEETT---
T ss_pred ChHHhcCCEEEECCcccceEEeeEEEEECCHHHHHhhcCC--CeEEEE-eCCc---HHHHHHHHH-hCCCEEEEeCCCCC
Confidence 578899998764321 333322 1 234577 888876 3444 455777888 89888887654321
Q ss_pred ----------CCceEEEEcCCCcccHHHHHHHH
Q 022062 99 ----------WDKGFVQVEGNGNVNTLNSLVNM 121 (303)
Q Consensus 99 ----------~~~~~i~V~~~~~~d~~~al~~l 121 (303)
.++|++.++. |+-++...|
T Consensus 74 ~~~v~~la~~~~i~vi~t~~----dtf~ta~~i 102 (105)
T PF07085_consen 74 SEEVLELAKELGIPVISTPY----DTFETARLI 102 (105)
T ss_dssp -HHHHHHHHHHT-EEEE-SS-----HHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEECC----CHHHHHHHH
Confidence 1677777762 555544444
No 241
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=44.42 E-value=1.5e+02 Score=29.40 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=62.3
Q ss_pred eEEeccCccccCCCcEEEEecCCcCChhh------cH-HHhHhcCCceEEEEcccCCC---C--CceEEEEcCCCcccHH
Q 022062 48 IICTDTRILAPNKNQWFFAITGQHFDAHE------FI-SPELYGKGCVGVIGNQVCNN---W--DKGFVQVEGNGNVNTL 115 (303)
Q Consensus 48 ~i~~dsr~v~~~~g~lFval~G~~~dg~~------~i-~~A~~~~GA~~vv~~~~~~~---~--~~~~i~V~~~~~~d~~ 115 (303)
..-++++-.++.+|-+||-. |+.-|=.. |+ +.|=+ .+|..|.++.-.-. | +-..-...++|-....
T Consensus 68 Rylin~~fw~~g~gPIffYt-GNEGdie~Fa~ntGFm~D~Ap~-~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtse 145 (492)
T KOG2183|consen 68 RYLINDDFWKKGEGPIFFYT-GNEGDIEWFANNTGFMWDLAPE-LKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSE 145 (492)
T ss_pred EEEEecccccCCCCceEEEe-CCcccHHHHHhccchHHhhhHh-hCceEEEeehhccccCCCCcchhccChhhhccccHH
Confidence 44566777777557888764 55444333 33 33456 89999998853211 1 0001111122222667
Q ss_pred HHHHHHHH---Hhhc-C-CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022062 116 NSLVNMAC---YARN-S-RFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160 (303)
Q Consensus 116 ~al~~la~---~~~~-p-~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~ 160 (303)
+||+..|. +.++ + ....++|++-||.|. ||++.+ ..+++
T Consensus 146 QALADfA~ll~~lK~~~~a~~~pvIafGGSYGG-----MLaAWf-RlKYP 189 (492)
T KOG2183|consen 146 QALADFAELLTFLKRDLSAEASPVIAFGGSYGG-----MLAAWF-RLKYP 189 (492)
T ss_pred HHHHHHHHHHHHHhhccccccCcEEEecCchhh-----HHHHHH-HhcCh
Confidence 88888776 3332 1 145799999999996 999999 44554
No 242
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.19 E-value=40 Score=33.07 Aligned_cols=29 Identities=31% Similarity=0.312 Sum_probs=21.0
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHH--hCCCCe
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALE--SLGVNV 161 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~--~~g~~~ 161 (303)
.+|++.|- .|||||...|+..+. ..+.++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V 254 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKV 254 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 46666665 479999999988875 345666
No 243
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=44.15 E-value=26 Score=34.67 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
+.-+|||.|-+ ||||.+..|..+|+..+.++
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~v 243 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKS 243 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCce
Confidence 35689999975 79999999999996666554
No 244
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=43.89 E-value=23 Score=27.28 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=31.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC-CCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecC
Q 022062 135 VGVTGSVGKSTTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (303)
Q Consensus 135 IgVTGTnGKTTt~~ml~~iL~~~-g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~ 194 (303)
++--|-.||||++.-|+..+.+. |.++..--- +.. .+.+++|+-++.
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~--d~~-----------~~~D~IIiDtpp 52 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDL--DLQ-----------FGDDYVVVDLGR 52 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC--CCC-----------CCCCEEEEeCCC
Confidence 34456779999999999999777 888743111 111 223899999873
No 245
>PRK00300 gmk guanylate kinase; Provisional
Probab=43.68 E-value=20 Score=30.79 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
+..+|+|.|.+ ||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35689999986 89999999998873
No 246
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=43.66 E-value=32 Score=35.00 Aligned_cols=32 Identities=34% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCcEEEEeCCC------CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn------GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+.|-||+.+ |||||+-=|.+.|...|++++
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 46789999876 999999999999999998864
No 247
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=43.48 E-value=39 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=18.8
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|.+.|. .||||.+..+...|
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999997 47999988888777
No 248
>PRK13695 putative NTPase; Provisional
Probab=43.11 E-value=31 Score=28.88 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
.|++||.+ ||||...++..-|...|.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 36788765 79999999888886666654
No 249
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=42.69 E-value=23 Score=32.92 Aligned_cols=30 Identities=47% Similarity=0.471 Sum_probs=25.2
Q ss_pred cEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+|+|+ |-.|||||+.+++..|...+.++.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vg 80 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVG 80 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEE
Confidence 467776 788999999999999977787763
No 250
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.19 E-value=1.5e+02 Score=29.82 Aligned_cols=21 Identities=48% Similarity=0.808 Sum_probs=15.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 022062 134 LVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
.-|.-|+ ||||++..++..|.
T Consensus 40 f~Gp~G~-GKTT~ArilAk~Ln 60 (491)
T PRK14964 40 LVGASGV-GKTTCARIISLCLN 60 (491)
T ss_pred EECCCCc-cHHHHHHHHHHHHc
Confidence 3445554 79999999998883
No 251
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=42.09 E-value=29 Score=37.11 Aligned_cols=31 Identities=29% Similarity=0.181 Sum_probs=27.5
Q ss_pred CCcEEEEeCCC---CCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~ 161 (303)
..+.+-||||| |||-++..|.+.++..+.++
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~ 59 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPV 59 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 46889999997 99999999999998888765
No 252
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=42.06 E-value=33 Score=29.66 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~ 163 (303)
+..|+|-. ||||+...+...++..|+++..
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 45555544 5999999999999898888754
No 253
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=41.67 E-value=24 Score=29.23 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 139 GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 139 GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+-.|||+++.-|+..|++.|.++.
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~ 30 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVG 30 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEE
Confidence 337999999999999988888874
No 254
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=41.17 E-value=38 Score=27.80 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 135 IgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|.++| -+||||.+..|+..|...+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 44554 35899999999999976676653
No 255
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=41.14 E-value=37 Score=36.72 Aligned_cols=30 Identities=37% Similarity=0.666 Sum_probs=25.3
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.-+.|--|| |||||...+-.+|-..|.++.
T Consensus 688 ~LI~GMPGT-GKTTtI~~LIkiL~~~gkkVL 717 (1100)
T KOG1805|consen 688 ALILGMPGT-GKTTTISLLIKILVALGKKVL 717 (1100)
T ss_pred heeecCCCC-CchhhHHHHHHHHHHcCCeEE
Confidence 447888888 899999888888888998884
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=41.12 E-value=49 Score=31.36 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
..+-+.|=+|| |||..+..|+.-+...|+.|..
T Consensus 184 ~~Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 184 ENLLFYGNTGT-GKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred CcEEEECCCCC-cHHHHHHHHHHHHHHCCCeEEE
Confidence 34445565665 9999999988887677887743
No 257
>PRK06217 hypothetical protein; Validated
Probab=41.02 E-value=22 Score=30.14 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.9
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|.|+|. .||||.+..|++.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 3666664 58999999999988
No 258
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=41.01 E-value=28 Score=31.57 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=22.4
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 137 VTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 137 VTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
--|-.||||++..+++.|...|.++.
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl 35 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPL 35 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 44788999999999999988888874
No 259
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=40.81 E-value=37 Score=29.16 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+|.|.|- +||||++.+|+..| |++.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCcee
Confidence 4566664 68999999999988 66664
No 260
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=40.71 E-value=21 Score=32.70 Aligned_cols=29 Identities=41% Similarity=0.531 Sum_probs=21.8
Q ss_pred EEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+|.|. |-.|||||+.=|+-.|...|++|.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg 33 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVG 33 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 44454 678999999999999988999984
No 261
>PRK06761 hypothetical protein; Provisional
Probab=40.65 E-value=20 Score=33.24 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=23.9
Q ss_pred cEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|.|+| -.||||++..++.-|...+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 4677777 46899999999999976676653
No 262
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=40.33 E-value=23 Score=29.68 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=18.4
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
.+|.|+|.+ ||||+...|+..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 367788865 79999999988874
No 263
>PRK14709 hypothetical protein; Provisional
Probab=40.23 E-value=49 Score=32.98 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=17.0
Q ss_pred eCCCCCcHHHHHHHHHHHh
Q 022062 138 TGSVGKSTTKSMIALALES 156 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~ 156 (303)
+|.|||||...+|..+|-.
T Consensus 213 ~G~NGKSt~~~~i~~llG~ 231 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGD 231 (469)
T ss_pred CCCCcHHHHHHHHHHHHhh
Confidence 6889999999999999943
No 264
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=40.14 E-value=67 Score=30.19 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=50.3
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecC---CCcCccchhhHHhcc--cCCCCEEEEEecCCChhhHHHhhccc
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG---NWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMA 207 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g---~~n~~~g~p~~l~~~--~~~~~~~V~E~~~s~~~~~~~l~~~~ 207 (303)
-+-||||-.| +.|+++|-+.|+.|++..- .+|... +.|... ..+.++-+.+.+..+...+.|+...+
T Consensus 6 LITGITGQDG-----sYLa~lLLekGY~VhGi~Rrss~~n~~r---i~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v 77 (345)
T COG1089 6 LITGITGQDG-----SYLAELLLEKGYEVHGIKRRSSSFNTPR---IHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV 77 (345)
T ss_pred EEecccCCch-----HHHHHHHHhcCcEEEEEeeccccCCccc---ceeccccccCCceeEEEeccccchHHHHHHHHhc
Confidence 3568888888 7788888799999976532 233221 122222 34556777777777777777776778
Q ss_pred CccEEEEcCCCh-hhh
Q 022062 208 RPEIRVVLNVGD-SHL 222 (303)
Q Consensus 208 ~p~iaViTNi~~-dHl 222 (303)
+|| -|=|++. .|.
T Consensus 78 ~Pd--EIYNLaAQS~V 91 (345)
T COG1089 78 QPD--EIYNLAAQSHV 91 (345)
T ss_pred Cch--hheeccccccc
Confidence 888 3455542 443
No 265
>PRK01184 hypothetical protein; Provisional
Probab=39.89 E-value=33 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
+.+|++||- .||||++. +++..|+.++.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~----~~~~~g~~~i~ 30 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK----IAREMGIPVVV 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHH----HHHHcCCcEEE
Confidence 457899996 57999765 45666777653
No 266
>PRK00131 aroK shikimate kinase; Reviewed
Probab=39.85 E-value=30 Score=28.34 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=18.2
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHH
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL 154 (303)
.+.|.++| ..||||++..|++.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34566666 459999999999998
No 267
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=39.83 E-value=29 Score=28.03 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=35.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCC
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s 195 (303)
+.+..|-.||||++..++..|...|.++..--... +.+ .+ ..+++|+.++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~----~~~----~~--~yd~VIiD~p~~ 55 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL----GLA----NL--DYDYIIIDTGAG 55 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC----CCC----CC--CCCEEEEECCCC
Confidence 34557889999999999999988888774322111 000 01 179999999743
No 268
>PRK06197 short chain dehydrogenase; Provisional
Probab=39.76 E-value=1.2e+02 Score=27.50 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchh--hHHhcccCCCCEEEEEecCCChhhHHHh
Q 022062 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA--LSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (303)
Q Consensus 128 p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p--~~l~~~~~~~~~~V~E~~~s~~~~~~~l 203 (303)
|+.+.++|.|||.+| -+-.-++..|.+.|.+++...-+ ..-... ..+.....+.++.+++++.++..++.++
T Consensus 12 ~~~~~k~vlItGas~--gIG~~~a~~l~~~G~~vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 12 PDQSGRVAVVTGANT--GLGYETAAALAAKGAHVVLAVRN--LDKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred ccCCCCEEEEcCCCC--cHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 344567899999886 44455555554778876433211 110000 1111111234566777777777666554
No 269
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.48 E-value=1e+02 Score=24.03 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=44.1
Q ss_pred ccccCCCcEEEEec--CCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCC
Q 022062 55 ILAPNKNQWFFAIT--GQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG 132 (303)
Q Consensus 55 ~v~~~~g~lFval~--G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~ 132 (303)
...+ +|+++++. |+..+--+.++.|.+ +|+..|... . +. -+..++.-.. ..
T Consensus 40 ~~~~--~dl~I~iS~SG~t~e~i~~~~~a~~-~g~~iI~IT-------------~-----~~--~l~~~~~~~~----~~ 92 (119)
T cd05017 40 FVDR--KTLVIAVSYSGNTEETLSAVEQAKE-RGAKIVAIT-------------S-----GG--KLLEMAREHG----VP 92 (119)
T ss_pred CCCC--CCEEEEEECCCCCHHHHHHHHHHHH-CCCEEEEEe-------------C-----Cc--hHHHHHHHcC----Cc
Confidence 4566 88888874 555555566777777 776443322 1 21 1444443111 12
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHH
Q 022062 133 VLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
.+..=.+.+|+.+...|+..+|.
T Consensus 93 ~~~~p~~~~~r~s~~~~~~~~~~ 115 (119)
T cd05017 93 VIIIPKGLQPRAAFPYLFTALLN 115 (119)
T ss_pred EEECCCCCCCceeHHHHHHHHHH
Confidence 33445677899999999988883
No 270
>PRK08181 transposase; Validated
Probab=39.08 E-value=65 Score=29.58 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=27.4
Q ss_pred HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 124 ~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
|... ..++-++|=+|| |||-.+.-++.-+...|+++..
T Consensus 102 ~~~~-~~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 102 WLAK-GANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred HHhc-CceEEEEecCCC-cHHHHHHHHHHHHHHcCCceee
Confidence 4433 455667777777 9999998888777677888753
No 271
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=38.99 E-value=58 Score=30.11 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 022062 134 LVGVTGSVGKSTTKSMIALALESL 157 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~ 157 (303)
.+| .|.|||||...+|.+++-..
T Consensus 81 l~G-~g~nGKStl~~~l~~l~G~~ 103 (304)
T TIGR01613 81 LYG-NGGNGKSTFQNLLSNLLGDY 103 (304)
T ss_pred EEC-CCCCcHHHHHHHHHHHhChh
Confidence 345 68999999999999999433
No 272
>PF12846 AAA_10: AAA-like domain
Probab=38.87 E-value=24 Score=31.60 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=18.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.-++|-||+ |||++...+..-+...|..+
T Consensus 4 ~~i~G~tGs-GKT~~~~~l~~~~~~~g~~~ 32 (304)
T PF12846_consen 4 TLILGKTGS-GKTTLLKNLLEQLIRRGPRV 32 (304)
T ss_pred EEEECCCCC-cHHHHHHHHHHHHHHcCCCE
Confidence 345666664 78888765554443666665
No 273
>PLN02759 Formate--tetrahydrofolate ligase
Probab=38.84 E-value=46 Score=34.17 Aligned_cols=32 Identities=41% Similarity=0.437 Sum_probs=27.3
Q ss_pred CCcEEEEeCCC------CCcHHHHHHHHHHHh-CCCCeE
Q 022062 131 SGVLVGVTGSV------GKSTTKSMIALALES-LGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn------GKTTt~~ml~~iL~~-~g~~~~ 162 (303)
+.+.|-||+.+ |||||+-=|.+.|.. .|++++
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 46789999876 999999999999986 788864
No 274
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=38.65 E-value=25 Score=32.86 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=21.6
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 137 VTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 137 VTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
=-|-.||||++..++--+...|.+|.
T Consensus 8 GKGGVGKTT~aaA~A~~~A~~G~rtL 33 (305)
T PF02374_consen 8 GKGGVGKTTVAAALALALARRGKRTL 33 (305)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred cCCCCCcHHHHHHHHHHHhhCCCCee
Confidence 34679999999999999988998873
No 275
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=38.19 E-value=94 Score=28.53 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=22.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhC-C-CCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESL-G-VNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~-g-~~~ 161 (303)
..+|++.|- .|||||...|+..+... | .++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V 227 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKV 227 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeE
Confidence 457777775 47999999999888554 4 565
No 276
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=38.04 E-value=33 Score=28.63 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.++|+|.|.+ ||||.+..|++-+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678888764 7999999998766
No 277
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.85 E-value=1.7e+02 Score=25.29 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=43.7
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc----
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA---- 207 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~---- 207 (303)
.+++.|||.+| ..=.++..+++ +.|.++..+.-+.. ........+..+.++.+++++.++..++.++...+
T Consensus 5 ~~~vlItGasg-~iG~~l~~~l~-~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASS-GIGEGIARRFA-AEGARVVVTDRNEE---AAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCC-hHHHHHHHHHH-HCCCEEEEEeCCHH---HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46899999997 33445666665 77888754322210 11111111222456777788777777666543222
Q ss_pred -CccEEEEc
Q 022062 208 -RPEIRVVL 215 (303)
Q Consensus 208 -~p~iaViT 215 (303)
++|+.|.+
T Consensus 80 ~~~d~vi~~ 88 (251)
T PRK07231 80 GSVDILVNN 88 (251)
T ss_pred CCCCEEEEC
Confidence 67865553
No 278
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=37.75 E-value=30 Score=34.44 Aligned_cols=30 Identities=40% Similarity=0.726 Sum_probs=26.6
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.-+-|=||| |||-|-..|+.-|...|.+|.
T Consensus 22 GLIaGATGT-GKTvTLqvlAE~fS~~GVPVf 51 (502)
T PF05872_consen 22 GLIAGATGT-GKTVTLQVLAEQFSDAGVPVF 51 (502)
T ss_pred ceeeccCCC-CceehHHHHHHHhhhcCCcEE
Confidence 457888998 899999999999999999984
No 279
>PRK13947 shikimate kinase; Provisional
Probab=37.62 E-value=31 Score=28.52 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
-|.++| -.||||++.+|+..| |++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCE
Confidence 355655 468999999999998 5554
No 280
>PRK05854 short chain dehydrogenase; Provisional
Probab=37.40 E-value=1.5e+02 Score=27.21 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhh
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~ 204 (303)
..+.+++-|||.++ -+-..++..|.+.|.+++...-+........-.+.....+.++.+++++.++..++.++.
T Consensus 11 ~l~gk~~lITGas~--GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~ 84 (313)
T PRK05854 11 DLSGKRAVVTGASD--GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALG 84 (313)
T ss_pred ccCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHH
Confidence 34457899999885 556666666657888875432211000000111212222345667788877776665543
No 281
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=37.35 E-value=42 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=21.1
Q ss_pred CcEEEEe---CCCCCcHHHHHH-HHHHHhCCCC
Q 022062 132 GVLVGVT---GSVGKSTTKSMI-ALALESLGVN 160 (303)
Q Consensus 132 ~~vIgVT---GTnGKTTt~~ml-~~iL~~~g~~ 160 (303)
.++|+|+ |-.||||++.-+ +.+++..+.+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~ 34 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKV 34 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCe
Confidence 3577777 889999999999 5555444444
No 282
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=37.31 E-value=1.3e+02 Score=25.32 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=39.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEecCC---CcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhc-cc
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGN---WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR-MA 207 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~g~---~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~-~~ 207 (303)
+|.|+|. .||||.+..+++-+ +.++.. +.. +..+.-.-...++..++..|..+|.. .+.+.. +.. .-
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~-iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~-~~l~~~--i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLY-IATAQPFDDEMAARIAHHRQRRPAHWQTVEEP-LDLAEL--LRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEe-CcCCCCChHHHHHHHHHHHhcCCCCCeEeccc-ccHHHH--HHhhcC
Confidence 5778886 58999998776544 333321 221 11111011222334567789999985 222221 111 12
Q ss_pred CccEEEEcCCC
Q 022062 208 RPEIRVVLNVG 218 (303)
Q Consensus 208 ~p~iaViTNi~ 218 (303)
.+++.++=.|+
T Consensus 76 ~~~~VlID~Lt 86 (170)
T PRK05800 76 PGRCVLVDCLT 86 (170)
T ss_pred CCCEEEehhHH
Confidence 35667775554
No 283
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=37.03 E-value=36 Score=33.60 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=22.8
Q ss_pred EEEEeCC---CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS---VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT---nGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|-|||| .|||+++-.|.+.|++.|.++
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v 33 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAV 33 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 3455555 699999999999999998876
No 284
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=36.77 E-value=53 Score=26.81 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=35.1
Q ss_pred CccccCCCcEEEEecCCcC---ChhhcHHHhHhcCCceEEEEcccCC-------CCCceEEEEc
Q 022062 54 RILAPNKNQWFFAITGQHF---DAHEFISPELYGKGCVGVIGNQVCN-------NWDKGFVQVE 107 (303)
Q Consensus 54 r~v~~~~g~lFval~G~~~---dg~~~i~~A~~~~GA~~vv~~~~~~-------~~~~~~i~V~ 107 (303)
..+++ |++.|+ |.+| .-++++..|++..|..+||.+.-.. ..++|.|.++
T Consensus 41 ~~v~~--gdilVa--G~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~ 100 (129)
T cd01674 41 TKTKQ--GDILVS--GFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELP 100 (129)
T ss_pred hcCCC--CCEEEe--CCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEech
Confidence 55789 999998 7766 3456777777658999999874211 0267777777
No 285
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=36.72 E-value=47 Score=33.78 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=27.5
Q ss_pred CCcEEEEeC------CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTG------TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.++|.||. .-|||||+.=|++.|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999999 34899999999999988888863
No 286
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=36.66 E-value=40 Score=32.79 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=19.6
Q ss_pred CCcEEEEeC--CCCCcHHHHHHHHHH
Q 022062 131 SGVLVGVTG--SVGKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTG--TnGKTTt~~ml~~iL 154 (303)
..+.|+|+| +.||||.+..|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899998 579999998888776
No 287
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=36.48 E-value=42 Score=34.13 Aligned_cols=32 Identities=38% Similarity=0.442 Sum_probs=27.5
Q ss_pred CCcEEEEeC------CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTG------TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.++|.||. --|||||+-=|++.|.+.|.+++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 468999999 34899999999999988888763
No 288
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=36.32 E-value=70 Score=29.38 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHhhcCC-CCCcEEEEeCC--CCCcHHHHHHHHHHHhC
Q 022062 120 NMACYARNSR-FSGVLVGVTGS--VGKSTTKSMIALALESL 157 (303)
Q Consensus 120 ~la~~~~~p~-~~~~vIgVTGT--nGKTTt~~ml~~iL~~~ 157 (303)
.|+....+++ ....+||+.|- .||||...|+.+-|+..
T Consensus 7 ~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 7 ALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3555444433 55679999997 78999999999999766
No 289
>PRK06526 transposase; Provisional
Probab=36.11 E-value=52 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=27.3
Q ss_pred HHHHHHH--HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 117 SLVNMAC--YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 117 al~~la~--~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+..|+. |... ..++-++|=+| .|||.++.-|..-+...|+++.
T Consensus 85 ~~~~l~~~~fi~~-~~nlll~Gp~G-tGKThLa~al~~~a~~~g~~v~ 130 (254)
T PRK06526 85 TIAHLGTLDFVTG-KENVVFLGPPG-TGKTHLAIGLGIRACQAGHRVL 130 (254)
T ss_pred HHHHHhcCchhhc-CceEEEEeCCC-CchHHHHHHHHHHHHHCCCchh
Confidence 4445554 4443 33344455444 4899999888777767788763
No 290
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=35.57 E-value=23 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=20.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|+|.| ||||...+|..++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999996 899999999888743
No 291
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=35.42 E-value=34 Score=37.34 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
+.|-.|| ||||+...+..++++.|+++.+
T Consensus 367 v~G~AGT-GKTT~l~~~~~~~e~~G~~V~~ 395 (988)
T PRK13889 367 VVGYAGT-GKSAMLGVAREAWEAAGYEVRG 395 (988)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHcCCeEEE
Confidence 3444443 8999999999999888988753
No 292
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=35.16 E-value=33 Score=37.85 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
++|..|| ||||+...+..+++..|+++.+
T Consensus 402 v~G~AGT-GKTt~l~~~~~~~e~~G~~V~g 430 (1102)
T PRK13826 402 VVGRAGA-GKTTMMKAAREAWEAAGYRVVG 430 (1102)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHcCCeEEE
Confidence 3444444 8999999999999999998854
No 293
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.04 E-value=3.3e+02 Score=24.97 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=22.4
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
...|++.| ..||||+...|+..+...+.++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v 106 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTV 106 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeE
Confidence 35778876 4579999999988886555555
No 294
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=34.72 E-value=24 Score=27.95 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=18.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|.| ||||...+|...+.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 4589999998 78888877777664
No 295
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=34.60 E-value=44 Score=31.71 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=19.8
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
..+-+.|.+|| ||||.+..++..|.
T Consensus 65 ~~ilL~G~pGt-GKTtla~~lA~~l~ 89 (327)
T TIGR01650 65 RRVMVQGYHGT-GKSTHIEQIAARLN 89 (327)
T ss_pred CcEEEEeCCCC-hHHHHHHHHHHHHC
Confidence 34666777775 89999999999993
No 296
>PRK13768 GTPase; Provisional
Probab=34.26 E-value=38 Score=30.58 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.3
Q ss_pred EEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++.|+ |-.||||++.-++..|...|.++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~ 34 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVA 34 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceE
Confidence 44454 457899999999999988888763
No 297
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=34.22 E-value=40 Score=29.24 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=21.7
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH--HhCCCCe
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL--ESLGVNV 161 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL--~~~g~~~ 161 (303)
.++++||-| ||||...+|.... ...|..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 689999987 6999999998655 3345433
No 298
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=34.20 E-value=39 Score=33.74 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCcEEEEeCCC---CCcHHHHHHHHHHHhC
Q 022062 131 SGVLVGVTGSV---GKSTTKSMIALALESL 157 (303)
Q Consensus 131 ~~~vIgVTGTn---GKTTt~~ml~~iL~~~ 157 (303)
+++.|-||||+ |||+++..|.+.|+..
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 46779999985 9999999999999764
No 299
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=33.83 E-value=29 Score=29.79 Aligned_cols=22 Identities=50% Similarity=0.625 Sum_probs=19.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
+-.||..|+ ||||+...|++.|
T Consensus 5 IvLiG~mGa-GKSTIGr~LAk~L 26 (172)
T COG0703 5 IVLIGFMGA-GKSTIGRALAKAL 26 (172)
T ss_pred EEEEcCCCC-CHhHHHHHHHHHc
Confidence 456888885 9999999999999
No 300
>PRK07261 topology modulation protein; Provisional
Probab=33.80 E-value=37 Score=28.61 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.1
Q ss_pred EEEeCCC--CCcHHHHHHHHHH
Q 022062 135 VGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 135 IgVTGTn--GKTTt~~ml~~iL 154 (303)
|.|.|.. ||||.+..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4555543 8999999988776
No 301
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.72 E-value=71 Score=32.62 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
++.++|..++.+ .|+..-++.-+||= +|||||...|+.+| |+.+
T Consensus 93 eVk~WL~~~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~ 138 (634)
T KOG1970|consen 93 EVKQWLKQVAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQL 138 (634)
T ss_pred HHHHHHHHHHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhh---Ccee
Confidence 777888755443 34677779999996 67999999999998 6655
No 302
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=33.62 E-value=77 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=19.9
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.++|.. |||+.+..++.-+...+..+.
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~ 74 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNAR 74 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 45555543 899999998887756665553
No 303
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=33.55 E-value=63 Score=30.10 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.6
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
...|+++| -.||||+..+++..| |++.+
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L---g~~~i 162 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL---GVPFV 162 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 45788887 468999999999887 55543
No 304
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=33.40 E-value=33 Score=30.93 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.5
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.|-.||||++.-++..+.+.|.++.
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vL 32 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVL 32 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCce
Confidence 3567999999999999988898873
No 305
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=40 Score=29.72 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=25.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~ 163 (303)
...+-|||-| ||||.-++|+-+++.....+..
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~ 61 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEe
Confidence 3468899988 5999999999999766666643
No 306
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=33.26 E-value=46 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcC--CCCCcEEEEeCCCCCcHHHHH-HHHHH
Q 022062 115 LNSLVNMACYARNS--RFSGVLVGVTGSVGKSTTKSM-IALAL 154 (303)
Q Consensus 115 ~~al~~la~~~~~p--~~~~~vIgVTGTnGKTTt~~m-l~~iL 154 (303)
.+++..+...+... ....-+.+.||| |||-+... +.+++
T Consensus 9 ~~ai~~i~~~~~~~~~~~~~ll~~~tGs-GKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 9 QEAIARIINSLENKKEERRVLLNAPTGS-GKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHTTSGCSEEEEEESTTS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCC-CcChhhhhhhhccc
Confidence 35566666544331 123456677776 89888874 55555
No 307
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=33.11 E-value=25 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4689999997 89999999988874
No 308
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=32.89 E-value=46 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCC--CcHHHHHHHHHHH
Q 022062 131 SGVLVGVTGSVG--KSTTKSMIALALE 155 (303)
Q Consensus 131 ~~~vIgVTGTnG--KTTt~~ml~~iL~ 155 (303)
...+.+|-|-|| |||+..+|..+|.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788888875 9999999999984
No 309
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.79 E-value=23 Score=29.82 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999997 89999999888774
No 310
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.79 E-value=39 Score=28.12 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++.++|- .||||++..++..|.+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~ 32 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3445553 5899999999999877887763
No 311
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=32.59 E-value=57 Score=30.93 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=92.9
Q ss_pred hhcHHHhHhcCCceEEEEccc-CC-CC---------CceEEEEcCCCcccHHHHHHHHHHHhhc-CCCCCcEEEEeCC--
Q 022062 75 HEFISPELYGKGCVGVIGNQV-CN-NW---------DKGFVQVEGNGNVNTLNSLVNMACYARN-SRFSGVLVGVTGS-- 140 (303)
Q Consensus 75 ~~~i~~A~~~~GA~~vv~~~~-~~-~~---------~~~~i~V~~~~~~d~~~al~~la~~~~~-p~~~~~vIgVTGT-- 140 (303)
..++.+|++ +|...+=.=+. +. .| +..+.-|. .+..-+..++ ++. |..+.++|.|-||
T Consensus 87 ~~~i~eAl~-~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR-----~p~~~l~~~~--tG~~~k~~a~~V~vvGTd~ 158 (339)
T COG3367 87 REYIVEALE-AGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVR-----KPPLDLEYLC--TGMARKVDAKVVLVVGTDC 158 (339)
T ss_pred HHHHHHHHH-hCchhhhhhHHHhhcChHHHHHHHHcCCeeEeec-----cCccchhhhc--cCcccccCCcEEEEecccc
Confidence 378999999 99753311010 10 01 44444333 3333333333 222 3455789999998
Q ss_pred -CCCcHHHHHHHHHHHhCCCCe--EEecCC--CcCccch-----hhHH---------hcc-cCCCCEEEEEec--CCChh
Q 022062 141 -VGKSTTKSMIALALESLGVNV--FQSYGN--WNNRVGV-----ALSL---------IGI-DRAVDIAVLEMG--MSGKG 198 (303)
Q Consensus 141 -nGKTTt~~ml~~iL~~~g~~~--~~t~g~--~n~~~g~-----p~~l---------~~~-~~~~~~~V~E~~--~s~~~ 198 (303)
.||-||+..|...+++.|+++ .+|--. .-...|. |..+ ... +.+.|+.++|-- ..|++
T Consensus 159 ~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvdav~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~ 238 (339)
T COG3367 159 AVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVDAVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPA 238 (339)
T ss_pred ccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEecchhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCC
Confidence 599999999999999999986 222111 0111121 2111 122 348999999973 22332
Q ss_pred ---hHHHhhcccCccEEEEcC-CChhhhhccC----CHHHHHHHHHHHhhcCCCCCE--EEE---eCCChhhhhhc
Q 022062 199 ---EILELARMARPEIRVVLN-VGDSHLESLG----SLEDVARAKGEIFQESKLGDV--CVL---NADDPLVANLT 261 (303)
Q Consensus 199 ---~~~~l~~~~~p~iaViTN-i~~dHld~~g----t~e~~~~aK~~l~~~~~~~g~--~Vi---n~Dd~~~~~~~ 261 (303)
....+ ....||..|+-. -.+.|.+.|+ .++++. .+...++...+ ..+ |.|++..+++.
T Consensus 239 y~vtl~il-~gs~PDavvL~H~P~r~~~~g~P~~ip~leevi----~l~e~l~~a~Vvgi~lNtr~~dE~~are~~ 309 (339)
T COG3367 239 YGVTLGIL-HGSAPDAVVLCHDPNRKYRDGFPEPIPPLEEVI----ALYELLSNAKVVGIALNTRNLDEEEARELC 309 (339)
T ss_pred cccchhhh-cCCCCCeEEEEecCCCccccCCCCcCCCHHHHH----HHHHHccCCcEEEEEecccccChHHHHHHH
Confidence 12233 346899877754 3455666554 466655 33333332222 233 35666665554
No 312
>PRK13975 thymidylate kinase; Provisional
Probab=32.55 E-value=39 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.1
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALE 155 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~ 155 (303)
.+|.|.|. .||||.+.+|+..|.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36777776 589999999999994
No 313
>PRK13976 thymidylate kinase; Provisional
Probab=32.42 E-value=41 Score=29.51 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred cCccEEEEcCCChhhh------hccC--C---HHHHHHHHHHHhhcCCCCCEEEEeC
Q 022062 207 ARPEIRVVLNVGDSHL------ESLG--S---LEDVARAKGEIFQESKLGDVCVLNA 252 (303)
Q Consensus 207 ~~p~iaViTNi~~dHl------d~~g--t---~e~~~~aK~~l~~~~~~~g~~Vin~ 252 (303)
..||+.++.++.++-. +.+. + ++.+.++..+++.. .+.++.++++
T Consensus 123 ~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~~~Y~~l~~~-~~~~~~~id~ 178 (209)
T PRK13976 123 KYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVRKGFREIVIK-NPHRCHVITC 178 (209)
T ss_pred CCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHHHHHHHHHHh-CCCCeEEEEC
Confidence 4799999999987643 1121 1 34555666666654 2346777776
No 314
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=32.15 E-value=64 Score=27.80 Aligned_cols=21 Identities=48% Similarity=0.469 Sum_probs=14.7
Q ss_pred EEEEeCCC--CCcHHHHHHHHHH
Q 022062 134 LVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+|.|+|-. ||||+...+..-+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46777765 5999988655555
No 315
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=31.94 E-value=37 Score=27.88 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+|+|+|. .||||++..++..| |+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~~ 28 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLKL 28 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCce
Confidence 6888887 47999999888876 5544
No 316
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=31.92 E-value=82 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=19.7
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+.++|. .|||+.+..++.-+...+.++
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~ 69 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSA 69 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 34555554 389999999888775555554
No 317
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.76 E-value=1.7e+02 Score=28.85 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=68.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc--cCCCCEEEEEecCCChhhHHHhhccc
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMA 207 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~--~~~~~~~V~E~~~s~~~~~~~l~~~~ 207 (303)
.-+|.|.|-- ||||+.--+++-|.+.+ ++.+-.|.-... ...+--.++ ..+.-++.-|.. ..++.+..+-.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~-QiklRA~RL~~~~~~l~l~aEt~---~e~I~~~l~~~ 167 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQ-QIKLRADRLGLPTNNLYLLAETN---LEDIIAELEQE 167 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHH-HHHHHHHHhCCCccceEEehhcC---HHHHHHHHHhc
Confidence 4578888876 68888777777774455 887655531110 011111122 233344555553 33444433347
Q ss_pred CccEEEEcCCChhhhhcc----CCHHHHHHHHHHHhhcCCCCCEEEE
Q 022062 208 RPEIRVVLNVGDSHLESL----GSLEDVARAKGEIFQESKLGDVCVL 250 (303)
Q Consensus 208 ~p~iaViTNi~~dHld~~----gt~e~~~~aK~~l~~~~~~~g~~Vi 250 (303)
+|++.||=+|..=|.+.. ||..++.+.-.+|.+..+..+.+++
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~f 214 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIF 214 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEE
Confidence 999999999987666554 6788888888888776555555443
No 318
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=31.59 E-value=61 Score=29.41 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=25.4
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCC
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVN 160 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~ 160 (303)
|+.|.||| .+||||-+.-|+..|++.+.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 56788898 689999999999999888855
No 319
>PRK10436 hypothetical protein; Provisional
Probab=31.36 E-value=47 Score=33.08 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=12.3
Q ss_pred EEEEeCC--CCCcHHHH-HHHHH
Q 022062 134 LVGVTGS--VGKSTTKS-MIALA 153 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~-ml~~i 153 (303)
.|-|||. +|||||.+ +|.++
T Consensus 220 liLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 220 LILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred eEEEECCCCCChHHHHHHHHHhh
Confidence 4556654 48999873 44444
No 320
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=31.35 E-value=60 Score=33.31 Aligned_cols=32 Identities=41% Similarity=0.426 Sum_probs=27.1
Q ss_pred CCcEEEEeCCC------CCcHHHHHHHHHHH-hCCCCeE
Q 022062 131 SGVLVGVTGSV------GKSTTKSMIALALE-SLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn------GKTTt~~ml~~iL~-~~g~~~~ 162 (303)
+.+.|-||+.+ |||||+-=|.+.|. ..|.+++
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 46789999876 99999999999997 5788764
No 321
>PRK07078 hypothetical protein; Validated
Probab=31.03 E-value=73 Score=33.82 Aligned_cols=43 Identities=28% Similarity=0.230 Sum_probs=27.0
Q ss_pred cHHHHHHHHHH--HhhcCCCC-Cc-EEEEeCCCCCcHHHHHHHHHHHh
Q 022062 113 NTLNSLVNMAC--YARNSRFS-GV-LVGVTGSVGKSTTKSMIALALES 156 (303)
Q Consensus 113 d~~~al~~la~--~~~~p~~~-~~-vIgVTGTnGKTTt~~ml~~iL~~ 156 (303)
+..+.|+++.. +.++-+.+ +. .+| +|.|||||...+|..+|-.
T Consensus 471 el~~fLq~~~GY~Ltg~~~~q~~~~l~G-~G~NGKSt~l~~l~~llG~ 517 (759)
T PRK07078 471 ELQAYLQRMAGYALTGSTSEHALFFLYG-TGANGKSVFVNTLATILGD 517 (759)
T ss_pred HHHHHHHHHhhhhhcCCCchheEEEEEC-CCCCCchHHHHHHHHHhhh
Confidence 34556666554 33331222 21 234 7999999999999999943
No 322
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=30.96 E-value=45 Score=34.05 Aligned_cols=24 Identities=42% Similarity=0.303 Sum_probs=19.9
Q ss_pred CCCcEEEEeC--CCCCcHHHHHHHHH
Q 022062 130 FSGVLVGVTG--SVGKSTTKSMIALA 153 (303)
Q Consensus 130 ~~~~vIgVTG--TnGKTTt~~ml~~i 153 (303)
..+|-|.|-| |.||||+.+||++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 3477777777 89999999999985
No 323
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=30.92 E-value=39 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=18.0
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
+|.|+|.+ ||||++..|+.-| +.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~~~ 27 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GLPY 27 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCce
Confidence 36666664 7999998888777 4544
No 324
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=30.88 E-value=29 Score=28.56 Aligned_cols=14 Identities=50% Similarity=0.494 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHH
Q 022062 141 VGKSTTKSMIALAL 154 (303)
Q Consensus 141 nGKTTt~~ml~~iL 154 (303)
.||||++..|+..|
T Consensus 9 sGKSTla~~l~~~l 22 (163)
T TIGR01313 9 SGKSTIASALAHRL 22 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 39999999999888
No 325
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=30.67 E-value=91 Score=29.62 Aligned_cols=44 Identities=27% Similarity=0.147 Sum_probs=28.8
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEeC--CCCCcHHHHHHH-HHHHhCCCCe
Q 022062 113 NTLNSLVNMAC-YARNSRFSGVLVGVTG--SVGKSTTKSMIA-LALESLGVNV 161 (303)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vIgVTG--TnGKTTt~~ml~-~iL~~~g~~~ 161 (303)
|..-+|..+.. .| .+.|.+.|-| +|||||....|- ..| ..++++
T Consensus 83 Nlhf~lek~rm~n~----e~gp~v~vvGgsq~Gkts~~~tL~syal-k~~~~p 130 (424)
T COG5623 83 NLHFFLEKRRMFNY----EKGPTVMVVGGSQNGKTSFCFTLISYAL-KLGKKP 130 (424)
T ss_pred hHHHHHHhhccccc----ccCCEEEEECCCcCCceeHHHHHHHHHH-HhcCCc
Confidence 77777777653 22 2366777777 699999986554 455 456654
No 326
>PRK04182 cytidylate kinase; Provisional
Probab=30.60 E-value=39 Score=27.93 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.2
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+|.|+|. .||||++..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5777775 58999999998877
No 327
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=30.59 E-value=28 Score=29.89 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999997 89999999988874
No 328
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=30.54 E-value=75 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=18.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
...++|+|.+ ||||+...|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3567888855 89999888887773
No 329
>PRK13946 shikimate kinase; Provisional
Probab=30.43 E-value=45 Score=28.33 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=17.8
Q ss_pred cEEEEeC--CCCCcHHHHHHHHHH
Q 022062 133 VLVGVTG--SVGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTG--TnGKTTt~~ml~~iL 154 (303)
+.|.++| -.||||+..+|++-|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4566666 368999999999988
No 330
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=30.12 E-value=36 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=22.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
..++++.|-| ||||...+|+.++......+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 4689999997 79999999998875333333
No 331
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.06 E-value=29 Score=30.00 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999987 79999988888774
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=29.94 E-value=66 Score=28.22 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=20.2
Q ss_pred cEEEEeCCC--CCcHHHHHHH--HHHHhCCCCe
Q 022062 133 VLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~--~iL~~~g~~~ 161 (303)
+++.|||.| ||||.-..+. .++...|.-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 689999998 5787777777 4454455433
No 333
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=29.85 E-value=24 Score=30.29 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.1
Q ss_pred EEEEeC--CCCCcHHHHHHHHHH
Q 022062 134 LVGVTG--SVGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTG--TnGKTTt~~ml~~iL 154 (303)
+|-++| |.||||++..|...|
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~ 25 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERL 25 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhC
Confidence 455555 689999999999988
No 334
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.71 E-value=5e+02 Score=25.26 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=36.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHHHHhhcC-------------------------CCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 100 DKGFVQVEGNGNVNTLNSLVNMACYARNS-------------------------RFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~~~~~p-------------------------~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
++|++.+.+-|..++.+.|..++++++.| ....+.++|.|...| ...+..+|
T Consensus 243 GiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~---~~~~~~~l 319 (421)
T cd01976 243 GIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLR---PRHYIGAY 319 (421)
T ss_pred CCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCc---HHHHHHHH
Confidence 67777776677667788887777755431 123455556554333 23334566
Q ss_pred HhCCCCeEE
Q 022062 155 ESLGVNVFQ 163 (303)
Q Consensus 155 ~~~g~~~~~ 163 (303)
++.|.++..
T Consensus 320 ~elGmevv~ 328 (421)
T cd01976 320 EDLGMEVVG 328 (421)
T ss_pred HHCCCEEEE
Confidence 677777654
No 335
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=29.52 E-value=2.8e+02 Score=27.87 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=54.3
Q ss_pred cCHHHHHHHcCCeecccC-C----cceE--Eec-----cCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcc
Q 022062 27 WTINEIAESVNGKILKWG-P----PGII--CTD-----TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~-~----i~~i--~~d-----sr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~ 94 (303)
.++.+|++.++|+++... . ...+ ..+ .+.+.+ |++.+- |.+.|- +..|++ +|++++|...
T Consensus 138 ~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~--~~lvi~--gdr~d~---~~~ai~-~~~~~lIlt~ 209 (546)
T PRK14869 138 TSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE--GDIVIV--GDREDI---QLAAIE-AGVRLLIITG 209 (546)
T ss_pred CCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC--CCEEEE--cCcHHH---HHHHHH-cCCCEEEECC
Confidence 367889999998876322 1 1111 122 224567 887665 766554 446889 9999998875
Q ss_pred cCCC----------CCceEEEEcCCCcccHHHHHHHHHH
Q 022062 95 VCNN----------WDKGFVQVEGNGNVNTLNSLVNMAC 123 (303)
Q Consensus 95 ~~~~----------~~~~~i~V~~~~~~d~~~al~~la~ 123 (303)
..+. .++|+|.++. |+.++...+..
T Consensus 210 g~~~~~~v~~la~~~~i~ii~t~~----dt~~t~~~l~~ 244 (546)
T PRK14869 210 GAPVSEDVLELAKENGVTVISTPY----DTFTTARLINQ 244 (546)
T ss_pred CCCCCHHHHHHHHhCCCeEEEecc----cHHHHHHHhhc
Confidence 4331 1689998883 67777766653
No 336
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=29.50 E-value=44 Score=27.85 Aligned_cols=24 Identities=38% Similarity=0.278 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+..|+|-| ||||+...|..+|-
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3577777765 79999999999994
No 337
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.40 E-value=66 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=19.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-+.+.|+ .|||..+..++.-+...|+++.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~ 79 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVL 79 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCccee
Confidence 3555555 4899999888876657888874
No 338
>PRK09183 transposase/IS protein; Provisional
Probab=28.93 E-value=82 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
.+.+.|. .|||+.+..|...+...|+++..
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4555554 38999999998877677877743
No 339
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=28.38 E-value=52 Score=27.93 Aligned_cols=22 Identities=32% Similarity=0.184 Sum_probs=18.1
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+++++|.+ ||||+...|+.++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 467777764 7999999999988
No 340
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=28.29 E-value=56 Score=28.56 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=20.6
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 138 TGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|-.||||++.-++..+.+.|+++
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~ 30 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKV 30 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcE
Confidence 455799999999999998888886
No 341
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=28.24 E-value=2.9e+02 Score=28.52 Aligned_cols=21 Identities=52% Similarity=0.771 Sum_probs=17.2
Q ss_pred cEEEEeCCCCCcHHHHHHHHHH
Q 022062 133 VLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL 154 (303)
-+-|..|+ ||||++..++..|
T Consensus 50 L~~Gp~Gv-GKTt~Ar~lAk~L 70 (598)
T PRK09111 50 MLTGVRGV-GKTTTARILARAL 70 (598)
T ss_pred EEECCCCC-CHHHHHHHHHHhh
Confidence 34566676 8999999999988
No 342
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=28.18 E-value=5.1e+02 Score=24.91 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=54.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccC-CCCEEEEEecCCChhhHHHhhcccC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR-AVDIAVLEMGMSGKGEILELARMAR 208 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~-~~~~~V~E~~~s~~~~~~~l~~~~~ 208 (303)
..++.|+|-. ||||....++.-+...+.++..-.+... ....-....++.- ..++.++. .....++.......+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~--e~~le~I~~~i~~~~ 158 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLA--ETNLEDILASIEELK 158 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEc--cCcHHHHHHHHHhcC
Confidence 4577888765 8999888777666566667644222110 0000000111111 11222221 123333433323358
Q ss_pred ccEEEEcCCChhhhhc----cCCHHHHHHHHHHHhhcCCCCCE
Q 022062 209 PEIRVVLNVGDSHLES----LGSLEDVARAKGEIFQESKLGDV 247 (303)
Q Consensus 209 p~iaViTNi~~dHld~----~gt~e~~~~aK~~l~~~~~~~g~ 247 (303)
|++.||=+|..=+... -++..++.+.-..|.+..+..+.
T Consensus 159 ~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~i 201 (372)
T cd01121 159 PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNI 201 (372)
T ss_pred CcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999998885432222 34566665544444443333343
No 343
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=28.15 E-value=57 Score=34.48 Aligned_cols=29 Identities=41% Similarity=0.493 Sum_probs=23.6
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-+.|.+| .||||+...+..+++..|+++.
T Consensus 372 il~G~aG-TGKTtll~~i~~~~~~~g~~V~ 400 (744)
T TIGR02768 372 VVVGRAG-TGKSTMLKAAREAWEAAGYRVI 400 (744)
T ss_pred EEEecCC-CCHHHHHHHHHHHHHhCCCeEE
Confidence 3566677 4899999999999988888874
No 344
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=28.02 E-value=39 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=15.2
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhC
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESL 157 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~ 157 (303)
..|.|+|. .||||+...+..-+...
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred eEEEEECCCccccchHHHHHhhhcccc
Confidence 34555554 47888886666665333
No 345
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=73 Score=30.63 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=19.1
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhC
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESL 157 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~ 157 (303)
.-+.|-||| |||.|+.++..-|+..
T Consensus 45 ~~iyG~~GT-GKT~~~~~v~~~l~~~ 69 (366)
T COG1474 45 IIIYGPTGT-GKTATVKFVMEELEES 69 (366)
T ss_pred EEEECCCCC-CHhHHHHHHHHHHHhh
Confidence 445566665 8999999999999765
No 346
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=27.93 E-value=47 Score=34.83 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.5
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+|+|+|+. ||||++.+|+..|
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999985 7999999999998
No 347
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=27.91 E-value=58 Score=32.57 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEEeCC--CCCcHHHH-HHHHH
Q 022062 134 LVGVTGS--VGKSTTKS-MIALA 153 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~-ml~~i 153 (303)
+|.|||- +|||||.+ ++..+
T Consensus 244 lilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Confidence 5777775 48999987 44444
No 348
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=27.79 E-value=52 Score=32.74 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=28.5
Q ss_pred CCCCcEEEEeCCC------CCcHHHHHHHHHHHhCCCCeE
Q 022062 129 RFSGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVTGTn------GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+.+.|-||+-+ |||||+-=|.+.|...|++++
T Consensus 49 k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i 88 (554)
T COG2759 49 KPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAI 88 (554)
T ss_pred CCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchhe
Confidence 3457889998865 999999999999998888764
No 349
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.36 E-value=34 Score=30.99 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999997 89999999998884
No 350
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.28 E-value=32 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=23.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
..++|+.|-| ||||+-.||..+++....+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~ 61 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 4689999999 5999999999999654433
No 351
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=27.01 E-value=1.5e+02 Score=27.63 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.1
Q ss_pred CCCCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 129 RFSGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 129 ~~~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+..+|+|+|++ ||||+...+...|
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3557899999986 6888877776666
No 352
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.84 E-value=34 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|..++.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4589999987 69999998888774
No 353
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=26.75 E-value=1.3e+02 Score=25.75 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEecCCCcCccc
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVG 173 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g 173 (303)
+.-+|=|||- +||+|.+-.|.+.|-+.|.-+ +.+..-|-+.|
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~-Y~LDGDNvRhG 73 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLT-YILDGDNVRHG 73 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceE-EEecCcccccc
Confidence 3457778874 589999999999997777555 34443344444
No 354
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=26.74 E-value=54 Score=28.32 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEEeCCC--CCcHHHHHHHHHH
Q 022062 134 LVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+++|+|.| ||||+.++|..++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 78899988 7999999998887
No 355
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.72 E-value=66 Score=32.29 Aligned_cols=28 Identities=36% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+|-|||. +|||||-+-+-+-|.....++
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~~~~nI 289 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNTPERNI 289 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCceE
Confidence 6788886 579999866666664444444
No 356
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.62 E-value=2.9e+02 Score=24.00 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=37.7
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHh
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILEL 203 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l 203 (303)
+.+++-|||.+| ..=..++..++ +.|.++....-+ . .........+ ..+.+...++++.++...+..+
T Consensus 6 ~~~~vlItGasg-~iG~~la~~l~-~~G~~v~~~~r~--~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 6 NGKTAVVTGAAS-GIGKEIALELA-RAGAAVAIADLN--Q-DGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHH-HCCCeEEEEeCC--h-HHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 357899999998 44445555555 788887543221 1 0111111111 2245677788887777665543
No 357
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=26.61 E-value=73 Score=33.29 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=47.5
Q ss_pred eCC-CCCcHHHHHHHHHHHhCCCCeEE--ecCC--Cc-C---------ccchhh-----HHhcccCCCCEEEEEecCCCh
Q 022062 138 TGS-VGKSTTKSMIALALESLGVNVFQ--SYGN--WN-N---------RVGVAL-----SLIGIDRAVDIAVLEMGMSGK 197 (303)
Q Consensus 138 TGT-nGKTTt~~ml~~iL~~~g~~~~~--t~g~--~n-~---------~~g~p~-----~l~~~~~~~~~~V~E~~~s~~ 197 (303)
|+| .|||+++--|.+.|++.|+++.. ..+. .. . ....-+ .+..+..++|++++|-+....
T Consensus 10 T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~ 89 (684)
T PRK05632 10 TGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALLASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTR 89 (684)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHHhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCC
Confidence 444 89999999999999999988742 1111 10 0 000000 111346789999999863222
Q ss_pred hh------HHHhhcccCccEEEEcCCC
Q 022062 198 GE------ILELARMARPEIRVVLNVG 218 (303)
Q Consensus 198 ~~------~~~l~~~~~p~iaViTNi~ 218 (303)
.. -.++...+...+.++++..
T Consensus 90 ~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 90 KHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred cCcccCchHHHHHHHhCCCEEEEECCC
Confidence 11 1233344567788888764
No 358
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=26.53 E-value=4.6e+02 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhcCC---CCCcEEEEeCC--CCCcHHHHHHHHHHH--hCCCCe-EEecCCC
Q 022062 113 NTLNSLVNMACYARNSR---FSGVLVGVTGS--VGKSTTKSMIALALE--SLGVNV-FQSYGNW 168 (303)
Q Consensus 113 d~~~al~~la~~~~~p~---~~~~vIgVTGT--nGKTTt~~ml~~iL~--~~g~~~-~~t~g~~ 168 (303)
...+++..+-.+.-. . .+.++|+.-|. .|||||..=|++.+. ....++ +-|..+|
T Consensus 182 ~~~~~l~~~~~~~~~-~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY 244 (407)
T COG1419 182 YFSEKLRKLLLSLIE-NLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY 244 (407)
T ss_pred hHHHHHHHHHHhhcc-ccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence 556666665543322 2 23456666555 589999999999885 223344 3355544
No 359
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=26.48 E-value=1.9e+02 Score=26.33 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred cCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 127 NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 127 ~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
.|..+.-+-|=-|| ||||+...+..-+...|.+++-
T Consensus 50 ~pannvLL~G~rGt-GKSSlVkall~~y~~~GLRlIe 85 (249)
T PF05673_consen 50 LPANNVLLWGARGT-GKSSLVKALLNEYADQGLRLIE 85 (249)
T ss_pred CCCcceEEecCCCC-CHHHHHHHHHHHHhhcCceEEE
Confidence 35544433444443 7998888877777777877654
No 360
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=26.48 E-value=38 Score=28.95 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=20.5
Q ss_pred CcEEEEeCCCC--CcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSVG--KSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTnG--KTTt~~ml~~iL~~ 156 (303)
..+++|.|-|| |||...+|+.++..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 56899999875 99999999888743
No 361
>PRK00023 cmk cytidylate kinase; Provisional
Probab=26.46 E-value=57 Score=28.88 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.2
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+|+|+|. .||||++.+|+.-|
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57999987 58999999999887
No 362
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=26.18 E-value=33 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.6
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 022062 135 VGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 135 IgVTGTnGKTTt~~ml~~iL 154 (303)
||+-| +||||++..|..++
T Consensus 5 IAtiG-CGKTTva~aL~~LF 23 (168)
T PF08303_consen 5 IATIG-CGKTTVALALSNLF 23 (168)
T ss_pred ecCCC-cCHHHHHHHHHHHc
Confidence 34444 79999999999999
No 363
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=26.17 E-value=46 Score=29.17 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|.| ||||...+|+.++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4689999986 79999988888764
No 364
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=26.09 E-value=1e+02 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.8
Q ss_pred CCCCcEEEEeC--CCCCcHHHHHHHHH
Q 022062 129 RFSGVLVGVTG--SVGKSTTKSMIALA 153 (303)
Q Consensus 129 ~~~~~vIgVTG--TnGKTTt~~ml~~i 153 (303)
...+|.|+|-| +.||||+.+.|...
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 35688899999 68999999888865
No 365
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=26.04 E-value=65 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.7
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++|.++|- .||||.+..|...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 46777774 68999999998887
No 366
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=26.03 E-value=33 Score=31.90 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..++|+.|.| ||||+..+|..++..
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999998 799999999998853
No 367
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=25.94 E-value=48 Score=31.66 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=14.7
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..|.|+|. .||||+...|...+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHccc
Confidence 34666653 48999887766655
No 368
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=25.87 E-value=37 Score=30.51 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999986 89999999998874
No 369
>PRK08118 topology modulation protein; Reviewed
Probab=25.82 E-value=66 Score=26.99 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=39.3
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEecCCCc---Cccchhh----HHh-cccCCCCEEEEEecCCChhhHHHh
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWN---NRVGVAL----SLI-GIDRAVDIAVLEMGMSGKGEILEL 203 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~g~~n---~~~g~p~----~l~-~~~~~~~~~V~E~~~s~~~~~~~l 203 (303)
.|.|.|. .||||.+..|+..| +.+.. ..+... +....+- .++ .+-. .+-.|+|-.-.+ .+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l---~~~~~-~lD~l~~~~~w~~~~~~~~~~~~~~~~~-~~~wVidG~~~~--~~~~~ 75 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL---NIPVH-HLDALFWKPNWEGVPKEEQITVQNELVK-EDEWIIDGNYGG--TMDIR 75 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCce-ecchhhcccCCcCCCHHHHHHHHHHHhc-CCCEEEeCCcch--HHHHH
Confidence 4566554 58999999999888 33322 111110 0111111 111 1112 245788853222 22222
Q ss_pred hcccCccEEEEcCCChh
Q 022062 204 ARMARPEIRVVLNVGDS 220 (303)
Q Consensus 204 ~~~~~p~iaViTNi~~d 220 (303)
. -.+|..|+.+...+
T Consensus 76 l--~~~d~vi~Ld~p~~ 90 (167)
T PRK08118 76 L--NAADTIIFLDIPRT 90 (167)
T ss_pred H--HhCCEEEEEeCCHH
Confidence 2 36999999987644
No 370
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=25.80 E-value=78 Score=26.76 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=22.1
Q ss_pred EEEeCC--CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 135 VGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 135 IgVTGT--nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
|.+||- .||||...-+.+.|+..+.++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G 32 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGG 32 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccce
Confidence 678886 47999998888888777777643
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.69 E-value=7.4e+02 Score=25.42 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCcEEEEeC--CCCCcHHHHHHHHHHHhC--CCCe
Q 022062 131 SGVLVGVTG--SVGKSTTKSMIALALESL--GVNV 161 (303)
Q Consensus 131 ~~~vIgVTG--TnGKTTt~~ml~~iL~~~--g~~~ 161 (303)
+..+|+++| -.|||||...|+..+... +.++
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkV 383 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDV 383 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCce
Confidence 346777776 458999998888776443 3455
No 372
>COG1159 Era GTPase [General function prediction only]
Probab=25.65 E-value=5.6e+02 Score=24.02 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=87.1
Q ss_pred CcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC-----------CCceEEEEcCCCcccHHHHHHHHHH--Hhhc
Q 022062 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-----------WDKGFVQVEGNGNVNTLNSLVNMAC--YARN 127 (303)
Q Consensus 61 g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~-----------~~~~~i~V~~~~~~d~~~al~~la~--~~~~ 127 (303)
-+.|||+-|.-.-|.+=+-.++- |....++++.... .+..+|.|+++|..-++.+|.++.. .+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~--G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV--GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh--cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 47899999999999887766775 7777777754321 1457888999998777777777543 2221
Q ss_pred -CCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEec---CCCcCccchhhHHhc-c-cCCCCEEEEEecCCChhhHH
Q 022062 128 -SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY---GNWNNRVGVALSLIG-I-DRAVDIAVLEMGMSGKGEIL 201 (303)
Q Consensus 128 -p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~---g~~n~~~g~p~~l~~-~-~~~~~~~V~E~~~s~~~~~~ 201 (303)
-.-.+-+..|.++.+=+.--+++...|+....+++..+ ....+..-. +.+.. . ....-..|+.+|+-+....+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 12345677889999888888999999976555654322 111111100 11111 1 11122278888876665555
Q ss_pred Hhh
Q 022062 202 ELA 204 (303)
Q Consensus 202 ~l~ 204 (303)
.+.
T Consensus 162 ~L~ 164 (298)
T COG1159 162 TLL 164 (298)
T ss_pred HHH
Confidence 543
No 373
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=25.56 E-value=70 Score=27.46 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.4
Q ss_pred cEEEEeCCC--CCcHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIA 151 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~ 151 (303)
+++++||-| ||||...+|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 589999988 6999888877
No 374
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=25.56 E-value=61 Score=28.61 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.6
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+|+|+|.+ ||||++.+|+.-|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999875 7999999999877
No 375
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=25.55 E-value=78 Score=22.33 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=18.4
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
++..|+|-| ||||.-..+..+|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367888876 7999999999998
No 376
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.54 E-value=57 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.5
Q ss_pred CcEEEEeCCCC--CcHHHHHHHHHH
Q 022062 132 GVLVGVTGSVG--KSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTnG--KTTt~~ml~~iL 154 (303)
..+++++|.|| |||...+|+.++
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999986 999888887654
No 377
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=25.46 E-value=75 Score=27.50 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=18.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++++.|||- .||||+.....+.|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 467777775 47999999999888
No 378
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=25.45 E-value=56 Score=29.35 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.4
Q ss_pred EEEEeCC--CCCcHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIAL 152 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~ 152 (303)
+|||||- +||+|++.++..
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 7999996 689999877753
No 379
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=25.35 E-value=39 Score=29.29 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999986 79998888888774
No 380
>PRK14528 adenylate kinase; Provisional
Probab=25.13 E-value=70 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.5
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+.|.|+|. .||||.+.+|++-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 45677776 58999999998776
No 381
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.12 E-value=43 Score=28.81 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999987 69999888888774
No 382
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.12 E-value=43 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4578888887 59999988888774
No 383
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.75 E-value=62 Score=27.68 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999996 79999999888774
No 384
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=24.72 E-value=51 Score=29.55 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 5689999997 89999999998874
No 385
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.68 E-value=38 Score=30.80 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|.| ||||+..+|+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999987 79999998888774
No 386
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=24.59 E-value=63 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|+|-| ||||...+|+.++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999987 6999999999887
No 387
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=24.54 E-value=87 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=16.2
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|.|+| ..||||+...|...+ ....++
T Consensus 162 nili~G~tgSGKTTll~aL~~~i-p~~~ri 190 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREI-PAIERL 190 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhC-CCCCeE
Confidence 355555 358999987666555 333444
No 388
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=24.35 E-value=53 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.4
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
++|+|.|-+ ||||.+.+|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 468888876 7999988888765
No 389
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.33 E-value=49 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|.| ||||...+|+.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4689999987 79999999988874
No 390
>PLN02318 phosphoribulokinase/uridine kinase
Probab=24.28 E-value=72 Score=33.06 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+|||+|-+ ||||++.+|...+
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 35799999975 7999999999887
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=24.16 E-value=49 Score=26.68 Aligned_cols=18 Identities=50% Similarity=0.661 Sum_probs=13.8
Q ss_pred EEeCCCCCcHHHHHHHHHH
Q 022062 136 GVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 136 gVTGTnGKTTt~~ml~~iL 154 (303)
|..| .||||++..|+..+
T Consensus 6 G~~G-sGKST~a~~l~~~~ 23 (150)
T cd02021 6 GVSG-SGKSTVGKALAERL 23 (150)
T ss_pred cCCC-CCHHHHHHHHHhhc
Confidence 3344 38999999998876
No 392
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=24.14 E-value=46 Score=29.07 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5689999987 79999999988874
No 393
>TIGR00035 asp_race aspartate racemase.
Probab=24.12 E-value=2.9e+02 Score=24.34 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=24.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.|||-||.| |-.+.+....|++.|..+.
T Consensus 117 ~~~VgvLaT~~-T~~s~~y~~~l~~~g~~v~ 146 (229)
T TIGR00035 117 VKKAGLLGTKG-TMKDGVYEREMKKHGIEIV 146 (229)
T ss_pred CCEEEEEecHH-HHHhHHHHHHHHHCCCEEE
Confidence 56899999999 7777778888888887664
No 394
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.07 E-value=45 Score=28.97 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999987 79999999998874
No 395
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=23.93 E-value=76 Score=30.04 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=21.6
Q ss_pred CHHHHHHHcCCe---ecccCCcceEEeccCccccCCCcEEEEecCC
Q 022062 28 TINEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQ 70 (303)
Q Consensus 28 ~l~~l~~~~~~~---~~~~~~i~~i~~dsr~v~~~~g~lFval~G~ 70 (303)
....+...++.. ++.++.++.|.++ .+ +.+|+--.|.
T Consensus 10 ~~~~~~~~l~~~l~~~l~D~~V~eI~iN----~~--~~v~v~~~g~ 49 (323)
T PRK13833 10 LVRKLQDALGDQLCVALDDATVVEIMLN----PD--GKLFIERLGH 49 (323)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEC----CC--CEEEEEECCc
Confidence 345555555442 3445568888887 35 6777765543
No 396
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.87 E-value=1.4e+02 Score=27.38 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHH
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALE 155 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~ 155 (303)
|+.+.|..++. +-++|-+-++|- .||||....|++.|-
T Consensus 34 ~tv~rl~via~-----~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 34 DTVERLSVIAK-----EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHHHHHHHH-----cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 66666665554 345777888885 579999999999883
No 397
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.86 E-value=7.7e+02 Score=25.59 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=18.0
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+-++|+. ||||++..++..|.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355677775 59999999999983
No 398
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.82 E-value=42 Score=28.93 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|..++.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999986 69999888888774
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.81 E-value=39 Score=29.38 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4589999987 59999998888774
No 400
>PRK10908 cell division protein FtsE; Provisional
Probab=23.81 E-value=65 Score=27.98 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999986 89999999988774
No 401
>PRK08084 DNA replication initiation factor; Provisional
Probab=23.75 E-value=1.3e+02 Score=26.60 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++..+.++...+. .+.+.++|- .|||+....++.-+...|.++.
T Consensus 31 ~a~~~l~~~~~~~~--~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~ 77 (235)
T PRK08084 31 SLLAALQNALRQEH--SGYIYLWSREGAGRSHLLHAACAELSQRGRAVG 77 (235)
T ss_pred HHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 35555544322222 235666664 5899999988877756676664
No 402
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=23.75 E-value=43 Score=27.66 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHH
Q 022062 141 VGKSTTKSMIALAL 154 (303)
Q Consensus 141 nGKTTt~~ml~~iL 154 (303)
.||||+..+|++.|
T Consensus 3 sGKStvg~~lA~~L 16 (158)
T PF01202_consen 3 SGKSTVGKLLAKRL 16 (158)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh
Confidence 69999999999999
No 403
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=23.50 E-value=47 Score=28.41 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999987 79999999988774
No 404
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=23.48 E-value=84 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=19.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+.+|.|-| ||||+..+|..+|
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899988 7999999998665
No 405
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=23.42 E-value=43 Score=28.78 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..++||.|-| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999986 69999888888774
No 406
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=23.41 E-value=44 Score=27.17 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=18.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|+|.| ||||...+|..++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4688999986 7999888887776
No 407
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.39 E-value=70 Score=28.63 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|.| ||||...+|+.++.
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4589999986 79999999998874
No 408
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=23.39 E-value=48 Score=28.33 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|+|.| ||||...+|+.++
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999997 8999999998877
No 409
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=23.35 E-value=55 Score=28.06 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|+|-| ||||...+|+.++..
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 5689999987 599999998888743
No 410
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=23.34 E-value=1.2e+02 Score=28.49 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.-+|.|+|.+ ||||++..|+.-|
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478888875 7999999999887
No 411
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=23.29 E-value=1.1e+02 Score=28.16 Aligned_cols=29 Identities=38% Similarity=0.441 Sum_probs=23.4
Q ss_pred cEEEEeC----CCCCcHHHHHHHHHHHhCCCCe
Q 022062 133 VLVGVTG----SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 133 ~vIgVTG----TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+.|-||| +-||..+++-|..+|++.|+++
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V 34 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKV 34 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--E
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeee
Confidence 4566777 5799999999999999999997
No 412
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=23.24 E-value=88 Score=28.95 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhh----hccCCHHHHHHHH
Q 022062 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL----ESLGSLEDVARAK 235 (303)
Q Consensus 185 ~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHl----d~~gt~e~~~~aK 235 (303)
.-+.|-|-. .+..+.++....+|||.|+|- +|-+ ..+.++.+|..+|
T Consensus 132 ~G~~~~E~e--qp~~i~~Ll~~~~PDIlViTG--HD~~~K~~~d~~dl~~YrnSk 182 (283)
T TIGR02855 132 VGIHCKEKE--MPEKVLDLIEEVRPDILVITG--HDAYSKNKGNYMDLNAYRHSK 182 (283)
T ss_pred EEEEecchh--chHHHHHHHHHhCCCEEEEeC--chhhhcCCCChhhhhhhhhhH
Confidence 456666653 555667777778999999995 4433 3345677777665
No 413
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=23.17 E-value=5.1e+02 Score=24.76 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=52.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhc--ccCCCCEEEEEecCCChhhHHHhhcccCcc
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG--IDRAVDIAVLEMGMSGKGEILELARMARPE 210 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~--~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ 210 (303)
+.|-|||-.|==-+ +-.-++| ..|+.++. ..|+++..-..+.-.+ ..+...+.+.|.+.++...++++.....||
T Consensus 3 ~~VLVtGgaGyiGs-ht~l~L~-~~gy~v~~-vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd 79 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGS-HTVLALL-KRGYGVVI-VDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFD 79 (343)
T ss_pred cEEEEecCCcceeh-HHHHHHH-hCCCcEEE-EecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCc
Confidence 46788888874333 3334566 78898864 6777765522222111 234578899999999998888888777887
Q ss_pred EEEE
Q 022062 211 IRVV 214 (303)
Q Consensus 211 iaVi 214 (303)
..+.
T Consensus 80 ~V~H 83 (343)
T KOG1371|consen 80 AVMH 83 (343)
T ss_pred eEEe
Confidence 7664
No 414
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.16 E-value=49 Score=29.69 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|.|-| ||||...+|+.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4689999987 699999999988743
No 415
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=23.01 E-value=59 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.3
Q ss_pred EEeCC--CCCcHHHHHHHHHH
Q 022062 136 GVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 136 gVTGT--nGKTTt~~ml~~iL 154 (303)
-+.|- .|||+++..+++.|
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 34454 69999999999998
No 416
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.00 E-value=47 Score=29.23 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|+|-| ||||...+|+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999996 899999999988853
No 417
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=23.00 E-value=68 Score=28.26 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++++|-| ||||...+|+.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999997 79999999988874
No 418
>PRK04296 thymidine kinase; Provisional
Probab=22.98 E-value=1.3e+02 Score=25.74 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=18.4
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++-|||- .||||....++.-+...|.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~ 34 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVL 34 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 46788998 5666555444444445677764
No 419
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=22.95 E-value=62 Score=28.59 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=21.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
..++||-|-| ||+|.+.||+.+..-.+.+
T Consensus 39 ~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~ 69 (267)
T COG4167 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGE 69 (267)
T ss_pred CcEEEEEccCCCcHhHHHHHHhcccCCCCce
Confidence 4567888876 6999999999988543333
No 420
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=22.92 E-value=81 Score=26.04 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=18.0
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|.++| -.||||++..|+.-| |+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l---g~~~ 30 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL---GYRF 30 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCE
Confidence 345554 358999999999888 5544
No 421
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=22.92 E-value=69 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|..++.
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999986 89999999999884
No 422
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=22.87 E-value=68 Score=29.63 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=19.5
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 139 GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 139 GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|--|||||+.=|+..|...|+++.
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl 32 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVL 32 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CCcccChhhhHHHHHHHhccceee
Confidence 567999999999999999999873
No 423
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=22.84 E-value=49 Score=29.05 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|.| ||||...+|+.++.
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999997 79999999999884
No 424
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=22.79 E-value=1.3e+02 Score=26.59 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=22.9
Q ss_pred CcEEEEeCCC--CCcHHH-HHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTK-SMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~-~ml~~iL~~~g~~~~ 162 (303)
..++.|+|.+ ||||.+ ++++..+ ..|.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~ 56 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNGYSVS 56 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEE
Confidence 4589999986 799995 7888877 5666663
No 425
>PRK09186 flagellin modification protein A; Provisional
Probab=22.45 E-value=3.9e+02 Score=23.05 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=40.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc----
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA---- 207 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~---- 207 (303)
.+++.|||.+| -+-.-++..|.+.|+++..+.-+........-.+.....+....+++++.++..++..+...+
T Consensus 4 ~k~vlItGas~--giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 4 GKTILITGAGG--LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 46899999887 455555655657888875442210000000001111111223445577767776665543222
Q ss_pred -CccEEEEc
Q 022062 208 -RPEIRVVL 215 (303)
Q Consensus 208 -~p~iaViT 215 (303)
++|+.|..
T Consensus 82 ~~id~vi~~ 90 (256)
T PRK09186 82 GKIDGAVNC 90 (256)
T ss_pred CCccEEEEC
Confidence 26766544
No 426
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=22.31 E-value=46 Score=28.78 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999987 59998888888774
No 427
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=22.26 E-value=4.3e+02 Score=22.20 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=39.1
Q ss_pred EEEeCC--CCCcHHHHHHHHHHHhCCCCeE--EecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc-Cc
Q 022062 135 VGVTGS--VGKSTTKSMIALALESLGVNVF--QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA-RP 209 (303)
Q Consensus 135 IgVTGT--nGKTTt~~ml~~iL~~~g~~~~--~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~-~p 209 (303)
+-|+|. +|||+.+..++. ..+.++. .|...+..+.......++..+..++-.+|.. .++.+...-. .+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~---~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~----~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA---ELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETP----RDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH---hcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecH----HHHHHHHHhcCCC
Confidence 345554 589999876643 3454542 2332322222222223444567789999974 2333322112 56
Q ss_pred cEEEEcCCC
Q 022062 210 EIRVVLNVG 218 (303)
Q Consensus 210 ~iaViTNi~ 218 (303)
++.+|=.++
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 777774444
No 428
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=22.25 E-value=1.2e+02 Score=32.45 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=27.2
Q ss_pred HHHHHHHHH-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022062 115 LNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158 (303)
Q Consensus 115 ~~al~~la~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g 158 (303)
..|..++.. +... +.+.-++.=||| |||-|+--|-..|..++
T Consensus 171 ~~AI~rv~Eaf~~g-~~raLlvMATGT-GKTrTAiaii~rL~r~~ 213 (875)
T COG4096 171 IIAIRRVIEAFSKG-QNRALLVMATGT-GKTRTAIAIIDRLIKSG 213 (875)
T ss_pred HHHHHHHHHHHhcC-CceEEEEEecCC-CcceeHHHHHHHHHhcc
Confidence 356677777 4444 555667777887 99999855555554554
No 429
>PRK02496 adk adenylate kinase; Provisional
Probab=22.23 E-value=86 Score=26.32 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|.|+|. .||||.+..|+..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3667776 58999999999887
No 430
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=22.23 E-value=51 Score=29.01 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=18.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4578888886 68888888887763
No 431
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=22.21 E-value=99 Score=29.24 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=16.3
Q ss_pred cEEEEeCCCC--CcHHHHHHHHHH
Q 022062 133 VLVGVTGSVG--KSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTnG--KTTt~~ml~~iL 154 (303)
..|.|+|..| ||||...+..-+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 4688888765 999997665544
No 432
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=22.20 E-value=50 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4589999987 79999999998874
No 433
>PRK14530 adenylate kinase; Provisional
Probab=22.20 E-value=77 Score=27.53 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=16.5
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|.|.|. .||||.+..|+..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4566665 48999999999888
No 434
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=22.19 E-value=74 Score=29.99 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=22.2
Q ss_pred HHHHHHHcCCe---ecccCCcceEEeccCccccCCCcEEEEecCC
Q 022062 29 INEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQ 70 (303)
Q Consensus 29 l~~l~~~~~~~---~~~~~~i~~i~~dsr~v~~~~g~lFval~G~ 70 (303)
.+.+.+.++.. ++.++.++.|.++. + +.+|+-..|.
T Consensus 15 ~~~~~~~~~~~l~~~l~Dp~v~EI~iN~----~--~~V~v~~~g~ 53 (319)
T PRK13894 15 KKKLERDMGPELLAALNDPKTVEIMLNA----D--GKLWQERLGE 53 (319)
T ss_pred HHHHHHHHhHHHHHHhcCCCceEEEEcC----C--CEEEEEECCc
Confidence 44455555432 34445688888875 6 7788776664
No 435
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=22.14 E-value=84 Score=27.49 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.6
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.++|+-|-| ||||+-.+|..++
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 688999988 7999999988664
No 436
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.12 E-value=74 Score=27.32 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999986 79999999988763
No 437
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=22.10 E-value=6.4e+02 Score=26.37 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=54.4
Q ss_pred cCHHHHHHHcCCeecccCC-----cceEE-------eccCccccCCCcEEEEecCCcCChhhcHHHhHhcC-----CceE
Q 022062 27 WTINEIAESVNGKILKWGP-----PGIIC-------TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK-----GCVG 89 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~-----i~~i~-------~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~-----GA~~ 89 (303)
.++.+|++.++++++.... +..+. .-.+.+++ |+|.+. +|.|.| -+..|++ . |+++
T Consensus 202 ~t~~~i~~~L~~~vl~~~~~~~~~v~~v~vgAm~~~~~~~~l~~--~~lVIt-~gdR~D---i~l~al~-~~~~~~~~a~ 274 (684)
T PRK05632 202 PRVIDIAKHLGATVLNEGDILTRRVKSVTVCARSIPNMLEHLKP--GSLVVT-PGDRSD---VILAALL-AAMNGPPIAG 274 (684)
T ss_pred CCHHHHHHHcCCEEEcCcccccceeeeEEEEecchHHHHHhccC--CcEEEe-CCChHH---HHHHHHH-hcccCCCceE
Confidence 4789999999999875321 33442 22345577 999875 566644 3445566 5 6788
Q ss_pred EEEcccCCC-------------CCceEEEEcCCCcccHHHHHHHHHHH
Q 022062 90 VIGNQVCNN-------------WDKGFVQVEGNGNVNTLNSLVNMACY 124 (303)
Q Consensus 90 vv~~~~~~~-------------~~~~~i~V~~~~~~d~~~al~~la~~ 124 (303)
+|..-.... .++|+|.++. |+......+.++
T Consensus 275 lIlTgg~~~~~~v~~l~~~a~~~~ipVl~t~~----dT~~ta~~i~~~ 318 (684)
T PRK05632 275 LLLTGGYEPDPRIAKLCEGAFETGLPVLSVDT----NTYQTALRLQSF 318 (684)
T ss_pred EEEcCCCCCCHHHHHHHhhcccCCCCEEEecC----CHHHHHHHHHHh
Confidence 776543220 1689998883 566666666553
No 438
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.01 E-value=7e+02 Score=26.38 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=14.7
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 022062 135 VGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 135 IgVTGTnGKTTt~~ml~~iL 154 (303)
.|--|+ ||||++..++..|
T Consensus 43 ~GPpGv-GKTTlAriLAK~L 61 (702)
T PRK14960 43 TGTRGV-GKTTIARILAKCL 61 (702)
T ss_pred ECCCCC-CHHHHHHHHHHHh
Confidence 344444 7999999999988
No 439
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.00 E-value=49 Score=30.17 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||+..+|..++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678888886 79999888888774
No 440
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.00 E-value=49 Score=28.46 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~ 157 (303)
..+++|.|-| ||||...+|..++...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 54 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4588899886 6888888888877433
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=21.99 E-value=69 Score=27.19 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=14.1
Q ss_pred EEEEeCCC--CCcHHHHHHHH
Q 022062 134 LVGVTGSV--GKSTTKSMIAL 152 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~ 152 (303)
++.|||-| ||||....+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 36799987 67877777763
No 442
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=21.85 E-value=54 Score=28.32 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4578999987 69999888888774
No 443
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=21.82 E-value=76 Score=32.08 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+|+|.|.+ ||||++.+|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999974 7999999999988
No 444
>PRK12338 hypothetical protein; Provisional
Probab=21.75 E-value=74 Score=30.09 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.8
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|.|+|+ .||||++..|+.-|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 458999996 58999999999888
No 445
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=21.63 E-value=51 Score=29.12 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4689999987 69999999988874
No 446
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=21.52 E-value=1.1e+02 Score=30.64 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=24.4
Q ss_pred EEEEeC----CCCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTG----SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTG----TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.|-||| |-||..|+.-|..+|++.|+++
T Consensus 3 yIfVTGGVvSslGKGi~aaSlg~lLk~rG~~V 34 (533)
T COG0504 3 YIFVTGGVVSSLGKGITAASLGRLLKARGLKV 34 (533)
T ss_pred EEEEeCCeecccccHHHHHHHHHHHHHCCceE
Confidence 455666 7899999999999999999987
No 447
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=21.52 E-value=59 Score=28.55 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|+|-| ||||...+|+.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4578899886 689988888888743
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=21.52 E-value=1.1e+02 Score=24.13 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 135 VGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 135 IgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+.|+|. .|||+....+...+...+.++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v 30 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKV 30 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 344554 389999988888776666665
No 449
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=21.51 E-value=3.8e+02 Score=25.52 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccC-CCCEEEEEecCCChhhHHHh
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR-AVDIAVLEMGMSGKGEILEL 203 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~-~~~~~V~E~~~s~~~~~~~l 203 (303)
....|.|||-.| =-=++++.++| +.||.|.+|.-+-.+.-. .-.|..++. +...-+++.+....+.++..
T Consensus 5 ~~~~VcVTGAsG-fIgswivk~LL-~rGY~V~gtVR~~~~~k~-~~~L~~l~~a~~~l~l~~aDL~d~~sf~~a 75 (327)
T KOG1502|consen 5 EGKKVCVTGASG-FIGSWIVKLLL-SRGYTVRGTVRDPEDEKK-TEHLRKLEGAKERLKLFKADLLDEGSFDKA 75 (327)
T ss_pred CCcEEEEeCCch-HHHHHHHHHHH-hCCCEEEEEEcCcchhhh-HHHHHhcccCcccceEEeccccccchHHHH
Confidence 356899999998 33345666666 899999888765322111 011223321 22355566655555555543
No 450
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=21.44 E-value=51 Score=31.81 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=13.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|.|+|- +|||||...+.+-+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 3555553 58999986665544
No 451
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=21.42 E-value=59 Score=27.25 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4579999986 69998888888763
No 452
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=21.42 E-value=53 Score=28.23 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999987 79999999988774
No 453
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.41 E-value=78 Score=29.94 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=22.6
Q ss_pred cEEEEe--CCCCCcHHHHHHHHHHHhCCCCe
Q 022062 133 VLVGVT--GSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 133 ~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+++-+| |=.||||++.-++-.|.+.|.++
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kv 33 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKV 33 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcE
Confidence 344454 56899999999999998888766
No 454
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.38 E-value=55 Score=27.90 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999876 68998888888774
No 455
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.30 E-value=53 Score=28.36 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=19.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|..++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999976 68888888888764
No 456
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.22 E-value=56 Score=28.61 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++++|-| ||||...+|+.++..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4578888886 699998888888743
No 457
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=21.20 E-value=78 Score=32.26 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=9.7
Q ss_pred EEEEeCC--CCCcHHH
Q 022062 134 LVGVTGS--VGKSTTK 147 (303)
Q Consensus 134 vIgVTGT--nGKTTt~ 147 (303)
+|.|||. +|||||-
T Consensus 318 lilv~G~tGSGKTTtl 333 (564)
T TIGR02538 318 MVLVTGPTGSGKTVSL 333 (564)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4666663 5899986
No 458
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.18 E-value=5.5e+02 Score=25.41 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=54.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccC-CCCEEEEEecCCChhhHHHhhcccC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR-AVDIAVLEMGMSGKGEILELARMAR 208 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~-~~~~~V~E~~~s~~~~~~~l~~~~~ 208 (303)
..++.|+|.. ||||....++.-+...+.++..-.+.- +....-....++.- ..++.++.- ....++.....-.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rlg~~~~~l~~~~e--~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRLGLPEPNLYVLSE--TNWEQICANIEEEN 170 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHcCCChHHeEEcCC--CCHHHHHHHHHhcC
Confidence 4678888875 699988877665546666764422211 00000000001110 112333321 23334433323368
Q ss_pred ccEEEEcCCChhhhh----ccCCHHHHHHHHHHHhhcCCCCC
Q 022062 209 PEIRVVLNVGDSHLE----SLGSLEDVARAKGEIFQESKLGD 246 (303)
Q Consensus 209 p~iaViTNi~~dHld----~~gt~e~~~~aK~~l~~~~~~~g 246 (303)
|++.||=+|..=+.+ .-++..++.+.-..|.+..+..+
T Consensus 171 ~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~g 212 (454)
T TIGR00416 171 PQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRG 212 (454)
T ss_pred CcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999888753322 23455555554444444333334
No 459
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=21.10 E-value=93 Score=27.12 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=18.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..++++||.| ||||...++..+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999997 8999888886544
No 460
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=21.09 E-value=1.5e+02 Score=27.86 Aligned_cols=31 Identities=42% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCC
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~ 168 (303)
..|=-| -||||.++.|+.=| |.+.-.|.|..
T Consensus 57 l~GPPG-lGKTTLA~IIA~Em---gvn~k~tsGp~ 87 (332)
T COG2255 57 LFGPPG-LGKTTLAHIIANEL---GVNLKITSGPA 87 (332)
T ss_pred eeCCCC-CcHHHHHHHHHHHh---cCCeEeccccc
Confidence 344444 38999999999888 44443455543
No 461
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=21.07 E-value=67 Score=27.56 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4689999986 89999999988774
No 462
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.78 E-value=69 Score=28.41 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccc
Confidence 4579999987 79999999998873
No 463
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=20.66 E-value=2.4e+02 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=16.4
Q ss_pred CCCCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 129 RFSGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 129 ~~~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+++|+++|.. ||||+..-+.+-+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999975 5665544443333
No 464
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=20.62 E-value=95 Score=28.35 Aligned_cols=29 Identities=41% Similarity=0.622 Sum_probs=23.1
Q ss_pred EEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.|+|= |-=|||||++=+++.|...|+++.
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl 33 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVL 33 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEE
Confidence 34553 456899999999999988998873
No 465
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=20.61 E-value=52 Score=31.11 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..++||.|-| ||||...+|+.++.
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999986 89999999998874
No 466
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=20.60 E-value=6.1e+02 Score=23.29 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=36.6
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEE
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~ia 212 (303)
+.|.|||.+| --=.+++..++ +.|+.+....... ...+....+.....+.++-+++.+......+..+.....+|+.
T Consensus 2 ~~vlVtGatG-fIG~~l~~~L~-~~g~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~V 78 (355)
T PRK10217 2 RKILITGGAG-FIGSALVRYII-NETSDAVVVVDKL-TYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCV 78 (355)
T ss_pred cEEEEEcCCc-HHHHHHHHHHH-HcCCCEEEEEecC-ccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEE
Confidence 4688999888 33334555555 6777643222221 1111111111111222344455555555455444332357765
Q ss_pred EEc
Q 022062 213 VVL 215 (303)
Q Consensus 213 ViT 215 (303)
|-.
T Consensus 79 ih~ 81 (355)
T PRK10217 79 MHL 81 (355)
T ss_pred EEC
Confidence 544
No 467
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=20.58 E-value=62 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|.| ||||...+|+.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5689999986 69999999888874
No 468
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.56 E-value=1e+02 Score=26.71 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=18.5
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+++|.|.| ||||..+.|...|
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999988 7999998887766
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.54 E-value=3.7e+02 Score=26.01 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH-hCC-CCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE-SLG-VNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~-~~g-~~~ 161 (303)
..++++.|.+ |||||...|+.-+. ..| .++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V 170 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKV 170 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 3466666664 69999999998653 335 344
No 470
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.46 E-value=59 Score=26.55 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=19.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|.| ||||...+|..++.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999987 69988888877763
No 471
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=20.44 E-value=60 Score=28.22 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|+|-| ||||...+|..++..
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4688999987 689988888888743
No 472
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=20.31 E-value=50 Score=28.46 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=18.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4578888876 68998888887764
No 473
>PRK08727 hypothetical protein; Validated
Probab=20.27 E-value=1.6e+02 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.0
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
.+.+.|. .|||.....+..-+...|.++..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y 74 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAY 74 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 3666665 47998888877777677777643
No 474
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=20.24 E-value=53 Score=29.56 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=18.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 37 GETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578888886 68888888888774
No 475
>PRK11823 DNA repair protein RadA; Provisional
Probab=20.23 E-value=7.5e+02 Score=24.34 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=53.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCC-CEEEEEecCCChhhHHHhhcccC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV-DIAVLEMGMSGKGEILELARMAR 208 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~-~~~V~E~~~s~~~~~~~l~~~~~ 208 (303)
..++.|+|.. ||||....++.-+...+.++..-.+.. +.........++..+. +..++ ...+..++.....-.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rlg~~~~~l~~~--~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERLGLPSDNLYLL--AETNLEAILATIEEEK 156 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHcCCChhcEEEe--CCCCHHHHHHHHHhhC
Confidence 4578888875 899988777766645677775433211 0000000011111111 12222 1123333333222358
Q ss_pred ccEEEEcCCChhhhhc----cCCHHHHHHHHHHHhhcCCCCC
Q 022062 209 PEIRVVLNVGDSHLES----LGSLEDVARAKGEIFQESKLGD 246 (303)
Q Consensus 209 p~iaViTNi~~dHld~----~gt~e~~~~aK~~l~~~~~~~g 246 (303)
|++.||=+|..=+.+. -++..++.+.-..|.+..+..+
T Consensus 157 ~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~ 198 (446)
T PRK11823 157 PDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRG 198 (446)
T ss_pred CCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999998886433322 2455555543334444333333
No 476
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=20.19 E-value=85 Score=27.58 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|+|-| ||||...+|+.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999987 79999999888774
No 477
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=20.19 E-value=59 Score=27.33 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
..+++|.|-| ||||...+|..++......+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4688999986 79999888888774333333
No 478
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=20.18 E-value=63 Score=28.37 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~ 156 (303)
..+++|+|.| ||||...+|+.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 4688999886 699999999888743
No 479
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.17 E-value=3.6e+02 Score=21.54 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=19.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeC
Q 022062 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139 (303)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTG 139 (303)
++|++.+. +- .+|+...+. .....+++|+.
T Consensus 73 ~Vp~~~~~-----tk----~eLG~a~Gk-~~~~svvaI~d 102 (122)
T PRK04175 73 KIPYVYVP-----SK----KDLGKAAGL-EVGAAAAAIVD 102 (122)
T ss_pred CCCEEEEC-----CH----HHHHHHhCC-CCCeEEEEEec
Confidence 68988887 54 355555554 23456899986
No 480
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=20.16 E-value=59 Score=27.92 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578888886 79999888888774
No 481
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=20.16 E-value=4.7e+02 Score=24.03 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=44.0
Q ss_pred ChhhcHHHhHhcCCceEEEEcccCCC-------------CCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEe-
Q 022062 73 DAHEFISPELYGKGCVGVIGNQVCNN-------------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT- 138 (303)
Q Consensus 73 dg~~~i~~A~~~~GA~~vv~~~~~~~-------------~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVT- 138 (303)
.|-+.+..+|+++-|..||...+... -++|++.|. +- .+|+...+. ....+|+||
T Consensus 135 sG~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVk-----tK----aeLG~AIGk--KtravVAItD 203 (263)
T PTZ00222 135 TGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK-----DM----ARLGDAIGR--KTATCVAITD 203 (263)
T ss_pred cCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC-----CH----HHHHHHHCC--CCCeEEEEee
Confidence 56667788887344777776654321 178999898 54 456654443 235689998
Q ss_pred -CCCCCcHHHHHHHHHH
Q 022062 139 -GSVGKSTTKSMIALAL 154 (303)
Q Consensus 139 -GTnGKTTt~~ml~~iL 154 (303)
|..-|.....++..+=
T Consensus 204 ~g~ed~~~l~~lv~~~~ 220 (263)
T PTZ00222 204 VNAEDEAALKNLIRSVN 220 (263)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 4445555555555554
No 482
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.07 E-value=74 Score=29.76 Aligned_cols=30 Identities=40% Similarity=0.451 Sum_probs=24.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
..++|+-|-| |||||-.||.-++.-.+.++
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 4589999988 59999999999996555554
No 483
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=20.03 E-value=91 Score=24.93 Aligned_cols=20 Identities=45% Similarity=0.770 Sum_probs=15.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 022062 134 LVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL 154 (303)
++|..| .||||.+..|+.-|
T Consensus 4 l~G~~G-sGKstla~~la~~l 23 (154)
T cd00464 4 LIGMMG-AGKTTVGRLLAKAL 23 (154)
T ss_pred EEcCCC-CCHHHHHHHHHHHh
Confidence 344444 58999999999888
Done!